Query 030504
Match_columns 176
No_of_seqs 133 out of 1365
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 14:43:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030504.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030504hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 1.4E-43 3E-48 226.2 16.6 163 12-174 8-174 (205)
2 KOG0092 GTPase Rab5/YPT51 and 100.0 2.3E-42 4.9E-47 219.8 17.5 165 10-174 2-169 (200)
3 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 6.7E-42 1.4E-46 217.9 16.8 167 8-174 17-187 (221)
4 PLN03071 GTP-binding nuclear p 100.0 9.7E-41 2.1E-45 226.8 21.1 174 1-174 1-174 (219)
5 KOG0080 GTPase Rab18, small G 100.0 2.2E-41 4.8E-46 209.0 15.9 168 8-175 6-177 (209)
6 KOG0078 GTP-binding protein SE 100.0 1.5E-40 3.3E-45 215.1 18.2 166 9-174 8-176 (207)
7 KOG0098 GTPase Rab2, small G p 100.0 3.6E-41 7.8E-46 213.0 14.6 163 12-174 5-170 (216)
8 cd04121 Rab40 Rab40 subfamily. 100.0 2.8E-40 6E-45 219.3 19.2 163 12-174 5-169 (189)
9 cd04133 Rop_like Rop subfamily 100.0 1E-39 2.2E-44 214.4 19.9 161 14-175 2-176 (176)
10 cd04120 Rab12 Rab12 subfamily. 100.0 2E-39 4.3E-44 217.1 19.0 161 14-174 1-165 (202)
11 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 4.3E-39 9.3E-44 212.7 19.4 162 11-173 3-181 (182)
12 cd00877 Ran Ran (Ras-related n 100.0 8.5E-39 1.8E-43 209.2 20.6 163 14-176 1-163 (166)
13 cd01875 RhoG RhoG subfamily. 100.0 8.6E-39 1.9E-43 213.4 19.9 162 12-174 2-179 (191)
14 KOG0394 Ras-related GTPase [Ge 100.0 2.6E-39 5.5E-44 204.2 15.7 166 10-175 6-181 (210)
15 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 1.6E-38 3.4E-43 216.0 19.8 167 7-174 7-190 (232)
16 cd04131 Rnd Rnd subfamily. Th 100.0 2.1E-38 4.6E-43 209.0 19.4 159 13-172 1-176 (178)
17 cd04122 Rab14 Rab14 subfamily. 100.0 5.5E-38 1.2E-42 205.5 19.2 162 13-174 2-166 (166)
18 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 6.1E-38 1.3E-42 211.0 19.7 161 14-174 1-170 (201)
19 KOG0079 GTP-binding protein H- 100.0 3.1E-39 6.7E-44 197.0 11.9 160 13-172 8-169 (198)
20 smart00176 RAN Ran (Ras-relate 100.0 5.2E-38 1.1E-42 209.9 18.8 156 19-174 1-156 (200)
21 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 8.4E-38 1.8E-42 205.5 18.3 161 13-174 2-166 (172)
22 KOG0087 GTPase Rab11/YPT3, sma 100.0 2.7E-38 5.8E-43 203.9 15.3 163 11-173 12-177 (222)
23 cd04128 Spg1 Spg1p. Spg1p (se 100.0 1.4E-37 3.1E-42 205.8 19.1 161 14-175 1-169 (182)
24 KOG0093 GTPase Rab3, small G p 100.0 3.8E-38 8.3E-43 192.0 13.4 161 14-174 22-185 (193)
25 cd04124 RabL2 RabL2 subfamily. 100.0 6E-37 1.3E-41 199.6 19.5 160 14-174 1-160 (161)
26 cd04117 Rab15 Rab15 subfamily. 100.0 5.1E-37 1.1E-41 199.9 19.1 157 14-170 1-160 (161)
27 cd01874 Cdc42 Cdc42 subfamily. 100.0 5.8E-37 1.2E-41 202.0 19.3 157 14-171 2-174 (175)
28 cd01865 Rab3 Rab3 subfamily. 100.0 6.5E-37 1.4E-41 200.2 19.3 160 14-173 2-164 (165)
29 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 1.1E-36 2.4E-41 199.3 19.2 161 13-173 2-165 (166)
30 cd01867 Rab8_Rab10_Rab13_like 100.0 9.5E-37 2.1E-41 199.8 18.6 162 13-174 3-167 (167)
31 cd01871 Rac1_like Rac1-like su 100.0 1.3E-36 2.9E-41 200.1 18.9 157 13-170 1-173 (174)
32 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 9.4E-37 2E-41 206.4 18.6 161 13-174 1-178 (222)
33 cd04119 RJL RJL (RabJ-Like) su 100.0 1.3E-36 2.9E-41 199.2 18.4 160 14-173 1-168 (168)
34 cd04127 Rab27A Rab27a subfamil 100.0 1.4E-36 3.1E-41 201.3 18.4 163 12-174 3-179 (180)
35 cd04110 Rab35 Rab35 subfamily. 100.0 2.4E-36 5.2E-41 202.9 19.6 162 12-173 5-168 (199)
36 KOG0086 GTPase Rab4, small G p 100.0 1.3E-37 2.8E-42 191.1 12.1 162 13-174 9-173 (214)
37 PF00071 Ras: Ras family; Int 100.0 2E-36 4.3E-41 197.4 18.3 158 15-172 1-161 (162)
38 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 2.5E-36 5.3E-41 198.1 18.8 161 15-175 2-168 (170)
39 cd04175 Rap1 Rap1 subgroup. T 100.0 2.1E-36 4.6E-41 197.6 18.4 159 13-172 1-163 (164)
40 PTZ00369 Ras-like protein; Pro 100.0 2.2E-36 4.8E-41 201.6 18.8 162 11-173 3-168 (189)
41 cd04134 Rho3 Rho3 subfamily. 100.0 3E-36 6.5E-41 201.0 19.3 159 14-173 1-175 (189)
42 cd04136 Rap_like Rap-like subf 100.0 3.3E-36 7.1E-41 196.5 17.9 158 13-171 1-162 (163)
43 cd04106 Rab23_lke Rab23-like s 100.0 4.9E-36 1.1E-40 195.5 18.3 157 14-170 1-161 (162)
44 cd04125 RabA_like RabA-like su 100.0 7.8E-36 1.7E-40 199.0 18.9 161 14-174 1-164 (188)
45 cd04109 Rab28 Rab28 subfamily. 100.0 9.4E-36 2E-40 202.2 19.2 160 14-173 1-167 (215)
46 cd04112 Rab26 Rab26 subfamily. 100.0 1.2E-35 2.6E-40 198.4 18.4 161 14-174 1-165 (191)
47 cd04111 Rab39 Rab39 subfamily. 100.0 1.2E-35 2.6E-40 200.9 18.6 162 13-174 2-168 (211)
48 cd04113 Rab4 Rab4 subfamily. 100.0 1.4E-35 3E-40 193.2 18.1 158 14-171 1-161 (161)
49 cd04116 Rab9 Rab9 subfamily. 100.0 2.1E-35 4.5E-40 194.0 19.0 161 11-171 3-170 (170)
50 cd01868 Rab11_like Rab11-like. 100.0 1.8E-35 3.9E-40 193.5 18.5 159 13-171 3-164 (165)
51 cd01866 Rab2 Rab2 subfamily. 100.0 2.4E-35 5.1E-40 193.4 19.1 161 13-173 4-167 (168)
52 cd04132 Rho4_like Rho4-like su 100.0 1.5E-35 3.2E-40 197.5 18.3 160 14-174 1-169 (187)
53 cd04176 Rap2 Rap2 subgroup. T 100.0 1.7E-35 3.7E-40 193.2 18.2 158 13-171 1-162 (163)
54 cd04118 Rab24 Rab24 subfamily. 100.0 3.3E-35 7E-40 196.8 19.8 161 14-174 1-168 (193)
55 cd04138 H_N_K_Ras_like H-Ras/N 100.0 2.4E-35 5.2E-40 192.2 18.6 158 13-171 1-161 (162)
56 cd04144 Ras2 Ras2 subfamily. 100.0 1.1E-35 2.3E-40 198.5 16.8 159 15-174 1-165 (190)
57 cd01864 Rab19 Rab19 subfamily. 100.0 3.2E-35 7E-40 192.2 18.4 159 13-171 3-165 (165)
58 cd01873 RhoBTB RhoBTB subfamil 100.0 2.9E-35 6.2E-40 196.4 18.4 156 13-170 2-194 (195)
59 cd04140 ARHI_like ARHI subfami 100.0 3.2E-35 7E-40 192.2 18.1 155 14-169 2-162 (165)
60 KOG0095 GTPase Rab30, small G 100.0 3.3E-36 7.2E-41 184.2 12.1 159 13-171 7-168 (213)
61 PLN03110 Rab GTPase; Provision 100.0 3.8E-35 8.3E-40 199.1 18.7 162 12-173 11-175 (216)
62 cd04126 Rab20 Rab20 subfamily. 100.0 4.2E-35 9.2E-40 198.2 18.3 155 14-173 1-191 (220)
63 cd04115 Rab33B_Rab33A Rab33B/R 100.0 6.7E-35 1.5E-39 191.6 18.8 159 13-171 2-168 (170)
64 PTZ00132 GTP-binding nuclear p 100.0 1.4E-34 3.1E-39 196.6 20.9 168 9-176 5-172 (215)
65 PLN03108 Rab family protein; P 100.0 4.5E-35 9.7E-40 198.1 18.3 162 13-174 6-170 (210)
66 smart00174 RHO Rho (Ras homolo 100.0 8.6E-35 1.9E-39 191.8 19.0 157 16-173 1-173 (174)
67 smart00175 RAB Rab subfamily o 100.0 9.7E-35 2.1E-39 189.7 18.7 161 14-174 1-164 (164)
68 cd04145 M_R_Ras_like M-Ras/R-R 100.0 9.4E-35 2E-39 189.8 18.5 159 12-171 1-163 (164)
69 smart00173 RAS Ras subfamily o 100.0 7.4E-35 1.6E-39 190.3 18.0 159 14-173 1-163 (164)
70 cd01860 Rab5_related Rab5-rela 100.0 1.8E-34 4E-39 188.3 18.6 159 13-171 1-162 (163)
71 cd04101 RabL4 RabL4 (Rab-like4 100.0 1.8E-34 3.9E-39 188.5 18.6 158 14-171 1-163 (164)
72 cd04142 RRP22 RRP22 subfamily. 100.0 2.5E-34 5.5E-39 192.4 19.2 162 14-175 1-177 (198)
73 cd01862 Rab7 Rab7 subfamily. 100.0 2.5E-34 5.4E-39 189.2 18.8 161 14-174 1-169 (172)
74 KOG0091 GTPase Rab39, small G 100.0 9.3E-36 2E-40 184.7 10.7 161 13-173 8-174 (213)
75 KOG0088 GTPase Rab21, small G 100.0 7.8E-36 1.7E-40 184.2 10.3 165 9-173 9-176 (218)
76 cd01861 Rab6 Rab6 subfamily. 100.0 2.5E-34 5.5E-39 187.3 18.1 158 14-171 1-161 (161)
77 cd04130 Wrch_1 Wrch-1 subfamil 100.0 4.5E-34 9.7E-39 188.2 19.1 156 14-170 1-172 (173)
78 cd01863 Rab18 Rab18 subfamily. 100.0 4.9E-34 1.1E-38 185.9 18.9 158 14-171 1-161 (161)
79 cd01892 Miro2 Miro2 subfamily. 100.0 3.5E-34 7.5E-39 187.8 18.1 162 11-173 2-167 (169)
80 PLN03118 Rab family protein; P 100.0 9E-34 2E-38 192.1 20.5 165 10-175 11-180 (211)
81 PLN00223 ADP-ribosylation fact 100.0 1.4E-34 3E-39 191.4 16.1 159 11-174 15-180 (181)
82 cd04103 Centaurin_gamma Centau 100.0 3.4E-34 7.4E-39 185.7 17.4 151 14-171 1-158 (158)
83 cd04149 Arf6 Arf6 subfamily. 100.0 1.1E-34 2.4E-39 189.9 14.7 154 11-169 7-167 (168)
84 cd04135 Tc10 TC10 subfamily. 100.0 1.5E-33 3.2E-38 185.9 19.6 158 14-172 1-174 (174)
85 cd04143 Rhes_like Rhes_like su 100.0 8.1E-34 1.8E-38 195.4 18.1 158 14-172 1-171 (247)
86 cd04158 ARD1 ARD1 subfamily. 100.0 5.6E-34 1.2E-38 187.0 16.3 156 15-175 1-164 (169)
87 cd04177 RSR1 RSR1 subgroup. R 100.0 2E-33 4.3E-38 184.3 18.7 159 13-172 1-164 (168)
88 cd04123 Rab21 Rab21 subfamily. 100.0 2.5E-33 5.4E-38 182.6 18.6 158 14-171 1-161 (162)
89 smart00177 ARF ARF-like small 100.0 9.2E-34 2E-38 186.8 16.4 157 11-172 11-174 (175)
90 cd04146 RERG_RasL11_like RERG/ 100.0 9.7E-34 2.1E-38 185.2 16.3 157 15-172 1-164 (165)
91 cd04148 RGK RGK subfamily. Th 100.0 2.4E-33 5.2E-38 190.8 18.4 158 14-173 1-164 (221)
92 KOG0081 GTPase Rab27, small G 100.0 8.3E-36 1.8E-40 184.2 5.5 161 14-174 10-183 (219)
93 PTZ00133 ADP-ribosylation fact 100.0 1.1E-33 2.4E-38 187.4 15.9 159 11-174 15-180 (182)
94 cd04150 Arf1_5_like Arf1-Arf5- 100.0 7.6E-34 1.6E-38 184.5 14.9 151 14-169 1-158 (159)
95 cd01870 RhoA_like RhoA-like su 100.0 6.3E-33 1.4E-37 183.0 18.9 157 14-171 2-174 (175)
96 cd00154 Rab Rab family. Rab G 100.0 5.9E-33 1.3E-37 180.1 17.3 156 14-169 1-159 (159)
97 cd04139 RalA_RalB RalA/RalB su 100.0 1E-32 2.2E-37 180.1 18.0 159 14-173 1-163 (164)
98 KOG0097 GTPase Rab14, small G 100.0 9.5E-34 2E-38 172.2 12.0 164 12-175 10-176 (215)
99 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 1.7E-33 3.7E-38 183.7 13.1 150 16-169 2-163 (164)
100 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 9E-33 1.9E-37 183.3 16.0 161 12-173 2-171 (183)
101 cd04154 Arl2 Arl2 subfamily. 100.0 6.1E-33 1.3E-37 182.7 15.1 155 10-169 11-172 (173)
102 cd04114 Rab30 Rab30 subfamily. 100.0 5.1E-32 1.1E-36 177.7 19.4 160 12-171 6-168 (169)
103 cd04129 Rho2 Rho2 subfamily. 100.0 7.6E-32 1.7E-36 179.5 19.2 158 14-172 2-173 (187)
104 KOG0395 Ras-related GTPase [Ge 100.0 1.7E-32 3.7E-37 182.0 15.8 161 12-173 2-166 (196)
105 cd00157 Rho Rho (Ras homology) 100.0 7.3E-32 1.6E-36 177.3 18.7 155 14-169 1-170 (171)
106 PF00025 Arf: ADP-ribosylation 100.0 2.9E-32 6.3E-37 179.4 16.6 156 11-171 12-175 (175)
107 KOG0393 Ras-related small GTPa 100.0 7.1E-33 1.5E-37 180.2 13.1 163 12-175 3-182 (198)
108 KOG0073 GTP-binding ADP-ribosy 100.0 3.5E-32 7.6E-37 168.8 15.3 158 12-174 15-180 (185)
109 cd04157 Arl6 Arl6 subfamily. 100.0 1.4E-32 3E-37 179.2 13.8 151 15-169 1-161 (162)
110 cd01893 Miro1 Miro1 subfamily. 100.0 1.4E-31 3E-36 175.2 17.8 158 14-173 1-165 (166)
111 cd00876 Ras Ras family. The R 100.0 1.1E-31 2.4E-36 174.5 16.3 156 15-171 1-160 (160)
112 KOG0083 GTPase Rab26/Rab37, sm 100.0 8.2E-34 1.8E-38 170.7 5.7 158 17-174 1-162 (192)
113 cd04137 RheB Rheb (Ras Homolog 100.0 1.9E-31 4.2E-36 176.7 17.2 160 14-174 2-165 (180)
114 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 8.9E-32 1.9E-36 177.3 15.4 153 12-169 14-173 (174)
115 cd04147 Ras_dva Ras-dva subfam 100.0 2.8E-31 6.1E-36 178.2 17.6 157 15-172 1-163 (198)
116 cd04161 Arl2l1_Arl13_like Arl2 100.0 8.8E-32 1.9E-36 176.2 13.8 150 15-169 1-166 (167)
117 cd00879 Sar1 Sar1 subfamily. 100.0 1.5E-31 3.2E-36 178.7 14.8 156 11-171 17-190 (190)
118 cd04102 RabL3 RabL3 (Rab-like3 100.0 3.3E-31 7.1E-36 177.1 16.2 146 14-159 1-177 (202)
119 cd04160 Arfrp1 Arfrp1 subfamil 100.0 2.5E-31 5.5E-36 174.1 13.9 151 15-169 1-166 (167)
120 cd04156 ARLTS1 ARLTS1 subfamil 100.0 3.5E-31 7.7E-36 172.3 13.3 151 15-169 1-159 (160)
121 cd04151 Arl1 Arl1 subfamily. 100.0 6.7E-31 1.5E-35 170.6 14.5 150 15-169 1-157 (158)
122 smart00178 SAR Sar1p-like memb 100.0 7.9E-31 1.7E-35 174.1 14.9 156 11-171 15-184 (184)
123 cd00878 Arf_Arl Arf (ADP-ribos 100.0 1.6E-30 3.4E-35 168.9 14.7 150 15-169 1-157 (158)
124 KOG0070 GTP-binding ADP-ribosy 100.0 4.5E-30 9.8E-35 163.2 13.6 161 9-174 13-180 (181)
125 PLN00023 GTP-binding protein; 100.0 2.4E-29 5.2E-34 175.8 16.4 140 8-147 16-189 (334)
126 cd01890 LepA LepA subfamily. 100.0 2E-29 4.4E-34 166.9 15.0 155 15-172 2-177 (179)
127 PTZ00099 rab6; Provisional 100.0 9.5E-29 2.1E-33 162.5 16.4 140 36-175 3-145 (176)
128 cd01897 NOG NOG1 is a nucleola 100.0 9.9E-29 2.2E-33 162.0 16.2 155 15-171 2-167 (168)
129 KOG0096 GTPase Ran/TC4/GSP1 (n 100.0 1.7E-29 3.7E-34 160.5 11.8 166 11-176 8-173 (216)
130 cd04159 Arl10_like Arl10-like 100.0 6.1E-29 1.3E-33 161.2 14.8 150 16-169 2-158 (159)
131 cd04155 Arl3 Arl3 subfamily. 100.0 5.2E-29 1.1E-33 164.0 13.5 155 10-169 11-172 (173)
132 KOG4252 GTP-binding protein [S 100.0 9.1E-31 2E-35 165.1 2.0 163 11-173 18-182 (246)
133 KOG0071 GTP-binding ADP-ribosy 100.0 2.9E-28 6.2E-33 147.8 11.9 158 11-173 15-179 (180)
134 cd01898 Obg Obg subfamily. Th 100.0 9E-28 1.9E-32 157.7 13.9 153 15-170 2-169 (170)
135 TIGR00231 small_GTP small GTP- 100.0 5.5E-27 1.2E-31 151.9 16.6 156 13-168 1-160 (161)
136 TIGR02528 EutP ethanolamine ut 100.0 1.4E-27 3.1E-32 152.4 11.5 133 15-168 2-141 (142)
137 cd04171 SelB SelB subfamily. 100.0 6.1E-27 1.3E-31 152.8 14.6 153 14-169 1-163 (164)
138 COG1100 GTPase SAR1 and relate 100.0 1.7E-26 3.7E-31 157.5 16.6 162 12-173 4-186 (219)
139 cd01891 TypA_BipA TypA (tyrosi 99.9 3.8E-27 8.2E-32 157.8 12.6 146 14-162 3-172 (194)
140 cd01878 HflX HflX subfamily. 99.9 9.4E-27 2E-31 157.1 14.5 157 11-171 39-204 (204)
141 KOG0075 GTP-binding ADP-ribosy 99.9 2E-27 4.3E-32 145.2 9.3 157 12-172 19-182 (186)
142 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 3.7E-26 8E-31 149.7 15.1 155 15-172 2-166 (168)
143 PRK15494 era GTPase Era; Provi 99.9 4.1E-26 9E-31 163.8 15.6 159 11-175 50-219 (339)
144 PRK04213 GTP-binding protein; 99.9 2E-26 4.3E-31 155.2 12.5 153 11-173 7-193 (201)
145 cd01879 FeoB Ferrous iron tran 99.9 1E-25 2.2E-30 146.2 14.4 148 18-172 1-157 (158)
146 PRK12299 obgE GTPase CgtA; Rev 99.9 8.5E-26 1.8E-30 161.3 14.9 158 15-174 160-330 (335)
147 cd00882 Ras_like_GTPase Ras-li 99.9 1.8E-25 3.8E-30 143.7 14.6 150 18-168 1-156 (157)
148 TIGR00436 era GTP-binding prot 99.9 1.1E-25 2.4E-30 157.6 14.1 156 15-175 2-167 (270)
149 TIGR01393 lepA GTP-binding pro 99.9 1.7E-25 3.6E-30 170.4 15.8 158 13-173 3-181 (595)
150 TIGR00450 mnmE_trmE_thdF tRNA 99.9 4.6E-25 1E-29 162.8 15.4 153 11-173 201-361 (442)
151 PRK03003 GTP-binding protein D 99.9 2.9E-25 6.4E-30 166.1 14.5 155 12-173 37-200 (472)
152 KOG0076 GTP-binding ADP-ribosy 99.9 2.2E-26 4.7E-31 144.5 6.5 160 11-174 15-189 (197)
153 KOG1673 Ras GTPases [General f 99.9 3.9E-25 8.4E-30 136.5 11.8 165 9-174 16-188 (205)
154 cd01894 EngA1 EngA1 subfamily. 99.9 3.1E-25 6.7E-30 143.7 12.1 148 17-171 1-157 (157)
155 cd04164 trmE TrmE (MnmE, ThdF, 99.9 8.6E-25 1.9E-29 141.6 13.8 147 14-171 2-156 (157)
156 cd01889 SelB_euk SelB subfamil 99.9 8.1E-25 1.8E-29 146.3 13.4 156 14-172 1-186 (192)
157 TIGR02729 Obg_CgtA Obg family 99.9 1.6E-24 3.5E-29 154.6 15.3 157 14-171 158-328 (329)
158 cd00881 GTP_translation_factor 99.9 1.6E-24 3.5E-29 144.4 14.4 155 15-172 1-187 (189)
159 cd01881 Obg_like The Obg-like 99.9 4.7E-25 1E-29 145.5 11.4 151 18-170 1-175 (176)
160 PF08477 Miro: Miro-like prote 99.9 6.5E-25 1.4E-29 136.0 11.2 114 15-128 1-119 (119)
161 PRK05291 trmE tRNA modificatio 99.9 8.3E-25 1.8E-29 162.2 13.3 150 12-173 214-371 (449)
162 TIGR03156 GTP_HflX GTP-binding 99.9 2.4E-24 5.1E-29 155.0 15.0 153 12-170 188-350 (351)
163 PF02421 FeoB_N: Ferrous iron 99.9 1.3E-24 2.8E-29 138.4 11.6 147 14-167 1-156 (156)
164 PRK03003 GTP-binding protein D 99.9 2.5E-24 5.5E-29 161.1 14.3 156 11-172 209-382 (472)
165 cd01888 eIF2_gamma eIF2-gamma 99.9 3.5E-24 7.6E-29 144.2 13.6 113 62-175 83-202 (203)
166 TIGR00487 IF-2 translation ini 99.9 9.8E-24 2.1E-28 160.1 17.5 157 9-170 83-248 (587)
167 KOG3883 Ras family small GTPas 99.9 1.2E-23 2.5E-28 129.7 14.3 163 12-174 8-177 (198)
168 KOG0074 GTP-binding ADP-ribosy 99.9 1.5E-24 3.3E-29 131.9 10.3 159 10-172 14-179 (185)
169 TIGR03594 GTPase_EngA ribosome 99.9 8.5E-24 1.8E-28 157.2 16.4 158 11-172 170-344 (429)
170 PRK12297 obgE GTPase CgtA; Rev 99.9 1.2E-23 2.6E-28 153.8 16.3 156 15-174 160-329 (424)
171 KOG0072 GTP-binding ADP-ribosy 99.9 6E-25 1.3E-29 134.0 7.8 158 12-174 17-181 (182)
172 PRK15467 ethanolamine utilizat 99.9 3.5E-24 7.7E-29 138.7 11.9 140 15-173 3-148 (158)
173 PRK00454 engB GTP-binding prot 99.9 1.1E-23 2.4E-28 141.3 14.6 159 9-173 20-195 (196)
174 cd04163 Era Era subfamily. Er 99.9 3.4E-23 7.4E-28 135.2 15.1 155 12-170 2-167 (168)
175 cd04105 SR_beta Signal recogni 99.9 1.9E-23 4.1E-28 140.5 14.0 154 15-169 2-202 (203)
176 cd01895 EngA2 EngA2 subfamily. 99.9 3.5E-23 7.6E-28 136.1 15.0 154 13-170 2-173 (174)
177 PF00009 GTP_EFTU: Elongation 99.9 3.7E-24 8.1E-29 142.6 10.0 158 12-172 2-187 (188)
178 PRK05433 GTP-binding protein L 99.9 2.5E-23 5.4E-28 158.7 15.1 159 12-173 6-185 (600)
179 TIGR03598 GTPase_YsxC ribosome 99.9 1.9E-23 4.1E-28 138.2 12.7 147 9-161 14-179 (179)
180 TIGR03594 GTPase_EngA ribosome 99.9 2.3E-23 5.1E-28 154.9 14.0 152 15-173 1-161 (429)
181 TIGR00475 selB selenocysteine- 99.9 5.6E-23 1.2E-27 156.5 16.2 155 14-173 1-167 (581)
182 CHL00189 infB translation init 99.9 2.8E-23 6E-28 160.0 14.3 159 10-171 241-409 (742)
183 PRK05306 infB translation init 99.9 1E-22 2.2E-27 158.1 17.1 157 9-170 286-450 (787)
184 PRK12296 obgE GTPase CgtA; Rev 99.9 5.8E-23 1.3E-27 152.1 15.0 158 14-173 160-341 (500)
185 PRK00089 era GTPase Era; Revie 99.9 1.3E-22 2.9E-27 143.8 15.4 159 12-175 4-174 (292)
186 PRK11058 GTPase HflX; Provisio 99.9 1.1E-22 2.5E-27 149.5 15.2 156 14-173 198-363 (426)
187 PRK00093 GTP-binding protein D 99.9 2.8E-22 6E-27 149.3 16.4 158 11-172 171-344 (435)
188 PRK09554 feoB ferrous iron tra 99.9 3.2E-22 6.8E-27 155.9 17.1 153 12-171 2-167 (772)
189 PRK00093 GTP-binding protein D 99.9 9.1E-23 2E-27 151.9 13.4 148 14-170 2-160 (435)
190 COG2229 Predicted GTPase [Gene 99.9 3.6E-22 7.7E-27 127.2 14.0 159 7-170 4-176 (187)
191 TIGR00437 feoB ferrous iron tr 99.9 1.8E-22 4E-27 153.9 14.6 145 20-171 1-154 (591)
192 PRK09518 bifunctional cytidyla 99.9 3.6E-22 7.7E-27 155.8 16.4 154 12-173 274-437 (712)
193 PRK12317 elongation factor 1-a 99.9 2.6E-22 5.6E-27 148.8 14.2 155 10-164 3-197 (425)
194 PRK12298 obgE GTPase CgtA; Rev 99.9 2.8E-22 6E-27 145.9 13.4 158 15-174 161-335 (390)
195 PRK10218 GTP-binding protein; 99.9 1.5E-21 3.3E-26 148.5 16.8 158 12-172 4-195 (607)
196 cd00880 Era_like Era (E. coli 99.9 5.4E-22 1.2E-26 128.5 12.4 150 18-171 1-163 (163)
197 TIGR00483 EF-1_alpha translati 99.9 5.3E-22 1.2E-26 147.1 13.8 153 10-163 4-198 (426)
198 PRK09518 bifunctional cytidyla 99.9 4.4E-22 9.6E-27 155.3 13.7 156 12-173 449-622 (712)
199 COG1159 Era GTPase [General fu 99.9 1.1E-21 2.3E-26 134.4 13.4 161 10-175 3-175 (298)
200 KOG4423 GTP-binding protein-li 99.9 2.6E-24 5.7E-29 136.7 -0.9 162 12-173 24-195 (229)
201 TIGR01394 TypA_BipA GTP-bindin 99.9 1.3E-21 2.9E-26 148.9 13.3 157 14-173 2-192 (594)
202 COG0486 ThdF Predicted GTPase 99.9 2E-21 4.4E-26 140.2 13.3 155 11-173 215-377 (454)
203 cd01876 YihA_EngB The YihA (En 99.9 3.6E-21 7.8E-26 125.9 13.0 149 15-171 1-170 (170)
204 cd04166 CysN_ATPS CysN_ATPS su 99.9 1.6E-21 3.5E-26 131.8 10.6 146 15-162 1-184 (208)
205 TIGR00491 aIF-2 translation in 99.9 5.3E-21 1.2E-25 145.1 13.9 153 15-170 6-214 (590)
206 TIGR03680 eif2g_arch translati 99.9 4.7E-21 1E-25 141.0 13.2 159 11-172 2-196 (406)
207 PRK04000 translation initiatio 99.9 1.2E-20 2.6E-25 138.8 13.9 164 7-173 3-202 (411)
208 COG1160 Predicted GTPases [Gen 99.9 4.8E-21 1E-25 138.0 10.5 151 14-171 4-164 (444)
209 cd01884 EF_Tu EF-Tu subfamily. 99.9 3.4E-20 7.3E-25 123.7 13.8 147 12-161 1-172 (195)
210 KOG0077 Vesicle coat complex C 99.9 2.2E-21 4.8E-26 121.2 6.8 155 12-171 19-192 (193)
211 PF10662 PduV-EutP: Ethanolami 99.9 1.5E-20 3.4E-25 117.2 10.6 134 15-168 3-142 (143)
212 cd01896 DRG The developmentall 99.9 3.9E-20 8.5E-25 126.7 13.6 150 15-171 2-225 (233)
213 cd01883 EF1_alpha Eukaryotic e 99.9 9.5E-21 2.1E-25 128.9 10.4 146 15-162 1-195 (219)
214 COG1160 Predicted GTPases [Gen 99.8 1.1E-19 2.4E-24 131.0 15.3 156 12-171 177-350 (444)
215 PRK10512 selenocysteinyl-tRNA- 99.8 1.1E-19 2.4E-24 139.1 15.8 153 15-172 2-166 (614)
216 cd04167 Snu114p Snu114p subfam 99.8 4.4E-20 9.5E-25 125.3 12.2 154 15-171 2-210 (213)
217 KOG1423 Ras-like GTPase ERA [C 99.8 9E-20 1.9E-24 124.9 12.7 164 9-175 68-274 (379)
218 cd04165 GTPBP1_like GTPBP1-lik 99.8 1.2E-19 2.7E-24 123.4 13.5 152 15-169 1-220 (224)
219 PRK12736 elongation factor Tu; 99.8 1.3E-19 2.8E-24 133.0 14.4 161 9-172 8-201 (394)
220 PRK04004 translation initiatio 99.8 1.9E-19 4.1E-24 137.2 15.2 154 10-169 3-215 (586)
221 PRK12735 elongation factor Tu; 99.8 2.2E-19 4.8E-24 131.8 15.0 160 9-171 8-202 (396)
222 TIGR00485 EF-Tu translation el 99.8 1.4E-19 3.1E-24 132.9 13.7 148 8-158 7-179 (394)
223 cd04169 RF3 RF3 subfamily. Pe 99.8 2.1E-19 4.5E-24 125.3 13.1 119 13-134 2-140 (267)
224 cd04168 TetM_like Tet(M)-like 99.8 1.6E-19 3.4E-24 123.9 11.5 129 15-146 1-145 (237)
225 KOG1707 Predicted Ras related/ 99.8 4.9E-20 1.1E-24 135.4 8.7 163 8-172 4-175 (625)
226 COG0370 FeoB Fe2+ transport sy 99.8 4.2E-19 9.1E-24 133.4 13.6 156 12-174 2-166 (653)
227 COG0218 Predicted GTPase [Gene 99.8 2.7E-18 5.9E-23 111.8 14.6 159 10-174 21-199 (200)
228 PRK00741 prfC peptide chain re 99.8 9.6E-19 2.1E-23 131.8 13.9 117 12-131 9-145 (526)
229 CHL00071 tufA elongation facto 99.8 2.1E-18 4.6E-23 127.2 14.3 148 9-159 8-180 (409)
230 PF04670 Gtr1_RagA: Gtr1/RagA 99.8 3.3E-18 7.2E-23 116.0 13.8 157 15-173 1-177 (232)
231 PLN03126 Elongation factor Tu; 99.8 1.1E-18 2.4E-23 130.1 12.0 148 9-159 77-249 (478)
232 TIGR02034 CysN sulfate adenyly 99.8 1.7E-18 3.7E-23 127.5 12.4 147 14-162 1-187 (406)
233 COG1084 Predicted GTPase [Gene 99.8 3.5E-18 7.5E-23 118.4 12.9 163 6-171 161-335 (346)
234 PLN00043 elongation factor 1-a 99.8 1.9E-18 4.1E-23 128.2 12.5 151 9-162 3-203 (447)
235 cd04104 p47_IIGP_like p47 (47- 99.8 5.5E-18 1.2E-22 113.6 13.6 154 13-173 1-185 (197)
236 PRK05124 cysN sulfate adenylyl 99.8 1.6E-18 3.4E-23 129.6 11.4 152 10-163 24-216 (474)
237 PRK13351 elongation factor G; 99.8 3.1E-18 6.7E-23 133.8 13.4 118 11-131 6-139 (687)
238 cd01850 CDC_Septin CDC/Septin. 99.8 7.9E-18 1.7E-22 117.9 13.5 140 13-156 4-186 (276)
239 PRK00049 elongation factor Tu; 99.8 1.2E-17 2.5E-22 122.8 14.8 160 9-171 8-202 (396)
240 cd04170 EF-G_bact Elongation f 99.8 4.5E-18 9.7E-23 119.3 11.8 133 15-150 1-149 (268)
241 PTZ00141 elongation factor 1- 99.8 1.2E-17 2.6E-22 124.1 13.7 150 10-162 4-203 (446)
242 cd01886 EF-G Elongation factor 99.8 6E-18 1.3E-22 118.1 11.4 116 15-133 1-132 (270)
243 KOG0462 Elongation factor-type 99.8 7.7E-18 1.7E-22 123.3 12.2 159 12-173 59-236 (650)
244 PLN03127 Elongation factor Tu; 99.8 3.4E-17 7.5E-22 121.5 15.1 161 9-172 57-252 (447)
245 PRK05506 bifunctional sulfate 99.8 7.7E-18 1.7E-22 130.3 12.0 152 9-162 20-211 (632)
246 cd01885 EF2 EF2 (for archaea a 99.8 5.5E-18 1.2E-22 114.9 9.5 113 15-130 2-138 (222)
247 PF09439 SRPRB: Signal recogni 99.8 3.4E-18 7.3E-23 111.3 7.7 116 14-133 4-128 (181)
248 KOG1489 Predicted GTP-binding 99.8 7E-17 1.5E-21 111.4 13.9 153 15-170 198-365 (366)
249 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 9.8E-17 2.1E-21 107.6 13.4 159 14-174 1-186 (196)
250 COG0532 InfB Translation initi 99.7 8.3E-17 1.8E-21 118.1 13.9 154 12-170 4-168 (509)
251 cd01899 Ygr210 Ygr210 subfamil 99.7 2E-16 4.3E-21 112.5 14.0 158 16-175 1-272 (318)
252 TIGR00503 prfC peptide chain r 99.7 5.6E-17 1.2E-21 122.4 11.7 120 11-133 9-148 (527)
253 COG0481 LepA Membrane GTPase L 99.7 2.6E-16 5.7E-21 113.9 14.3 159 12-173 8-187 (603)
254 PTZ00327 eukaryotic translatio 99.7 9.6E-17 2.1E-21 119.0 12.4 161 10-172 31-233 (460)
255 PRK12739 elongation factor G; 99.7 1.4E-16 3.1E-21 124.3 13.5 117 12-131 7-139 (691)
256 COG5256 TEF1 Translation elong 99.7 1.6E-16 3.5E-21 113.3 12.1 154 9-162 3-201 (428)
257 PF01926 MMR_HSR1: 50S ribosom 99.7 9.2E-17 2E-21 98.9 8.9 105 15-126 1-116 (116)
258 KOG1191 Mitochondrial GTPase [ 99.7 1.5E-16 3.3E-21 115.4 10.7 160 12-172 267-450 (531)
259 COG2262 HflX GTPases [General 99.7 6.3E-16 1.4E-20 110.3 13.6 159 11-173 190-357 (411)
260 TIGR00484 EF-G translation elo 99.7 2.1E-16 4.6E-21 123.4 12.4 119 12-133 9-143 (689)
261 PRK00007 elongation factor G; 99.7 8.1E-16 1.8E-20 120.1 13.4 117 12-131 9-141 (693)
262 KOG1145 Mitochondrial translat 99.7 1.7E-15 3.7E-20 111.3 14.1 154 11-170 151-314 (683)
263 COG1163 DRG Predicted GTPase [ 99.7 3.6E-15 7.9E-20 103.4 14.3 154 11-171 61-288 (365)
264 COG4917 EutP Ethanolamine util 99.7 1.9E-16 4.2E-21 94.8 6.7 137 15-170 3-144 (148)
265 COG3596 Predicted GTPase [Gene 99.7 7E-16 1.5E-20 104.8 9.9 161 9-172 35-222 (296)
266 COG0536 Obg Predicted GTPase [ 99.7 2.4E-15 5.2E-20 105.0 12.4 157 16-174 162-335 (369)
267 PRK12740 elongation factor G; 99.7 1.3E-15 2.7E-20 119.1 11.9 110 19-131 1-126 (668)
268 KOG0090 Signal recognition par 99.7 1.9E-15 4.1E-20 98.9 10.3 152 14-171 39-238 (238)
269 KOG1490 GTP-binding protein CR 99.6 4.4E-16 9.5E-21 113.3 7.2 168 3-172 158-341 (620)
270 TIGR00490 aEF-2 translation el 99.6 3E-15 6.5E-20 117.4 10.7 117 12-131 18-152 (720)
271 PRK09602 translation-associate 99.6 3.5E-14 7.5E-19 103.9 14.8 83 14-96 2-113 (396)
272 cd00066 G-alpha G protein alph 99.6 8.9E-15 1.9E-19 104.6 11.3 115 60-174 159-313 (317)
273 PRK13768 GTPase; Provisional 99.6 1E-14 2.2E-19 101.2 10.1 111 63-173 98-248 (253)
274 KOG3905 Dynein light intermedi 99.6 3.9E-14 8.4E-19 98.5 12.5 160 11-173 50-291 (473)
275 PRK09866 hypothetical protein; 99.6 7.5E-14 1.6E-18 105.5 14.8 107 63-170 231-351 (741)
276 TIGR00157 ribosome small subun 99.6 1.2E-14 2.5E-19 100.4 9.8 95 73-169 24-120 (245)
277 KOG1532 GTPase XAB1, interacts 99.6 7E-15 1.5E-19 99.9 8.2 112 62-173 116-265 (366)
278 smart00275 G_alpha G protein a 99.6 1.6E-14 3.5E-19 104.0 10.5 114 60-173 182-335 (342)
279 PF05783 DLIC: Dynein light in 99.6 9.2E-14 2E-18 103.2 14.3 165 8-175 20-267 (472)
280 COG1217 TypA Predicted membran 99.6 1.5E-13 3.3E-18 99.6 13.6 159 12-173 4-196 (603)
281 COG2895 CysN GTPases - Sulfate 99.6 1.1E-13 2.5E-18 97.1 12.2 149 10-161 3-192 (431)
282 TIGR00991 3a0901s02IAP34 GTP-b 99.6 7.5E-14 1.6E-18 97.9 11.4 121 9-130 34-166 (313)
283 PF04548 AIG1: AIG1 family; I 99.6 5.1E-14 1.1E-18 95.4 10.1 159 14-174 1-188 (212)
284 TIGR00101 ureG urease accessor 99.6 1.2E-13 2.6E-18 92.5 11.6 99 62-172 92-196 (199)
285 PRK14845 translation initiatio 99.6 6.6E-14 1.4E-18 112.0 11.8 104 64-170 528-671 (1049)
286 smart00010 small_GTPase Small 99.5 6.2E-15 1.3E-19 91.7 4.6 113 14-161 1-115 (124)
287 cd01853 Toc34_like Toc34-like 99.5 1.2E-13 2.7E-18 95.3 11.3 122 9-131 27-163 (249)
288 KOG0458 Elongation factor 1 al 99.5 4.8E-13 1E-17 99.2 13.3 155 8-162 172-372 (603)
289 PLN00116 translation elongatio 99.5 6.4E-14 1.4E-18 111.6 8.8 117 11-130 17-163 (843)
290 PTZ00416 elongation factor 2; 99.5 1.5E-13 3.3E-18 109.2 9.8 116 12-130 18-157 (836)
291 KOG0461 Selenocysteine-specifi 99.5 1.6E-12 3.6E-17 91.2 13.6 161 11-174 5-195 (522)
292 KOG1707 Predicted Ras related/ 99.5 2.6E-12 5.6E-17 95.4 14.6 159 10-172 422-583 (625)
293 COG4108 PrfC Peptide chain rel 99.5 3.6E-13 7.9E-18 97.0 9.3 133 12-147 11-163 (528)
294 TIGR00073 hypB hydrogenase acc 99.5 1.5E-12 3.1E-17 88.1 11.8 150 11-170 20-205 (207)
295 PF03029 ATP_bind_1: Conserved 99.5 2.6E-13 5.7E-18 93.1 8.1 109 63-171 92-236 (238)
296 PRK09435 membrane ATPase/prote 99.5 1.3E-12 2.8E-17 93.3 11.6 101 61-171 148-259 (332)
297 PF05049 IIGP: Interferon-indu 99.5 3.3E-13 7.1E-18 97.1 8.5 155 12-172 34-218 (376)
298 cd01882 BMS1 Bms1. Bms1 is an 99.5 2.7E-12 5.9E-17 87.7 12.2 140 10-160 36-184 (225)
299 PTZ00258 GTP-binding protein; 99.5 4.3E-12 9.3E-17 92.3 13.6 86 11-96 19-126 (390)
300 PRK07560 elongation factor EF- 99.4 6.3E-13 1.4E-17 104.7 8.5 117 12-131 19-153 (731)
301 PF00735 Septin: Septin; Inte 99.4 6.7E-12 1.4E-16 88.2 12.7 138 13-153 4-182 (281)
302 KOG0082 G-protein alpha subuni 99.4 4E-12 8.7E-17 90.5 11.2 114 60-173 193-345 (354)
303 COG0050 TufB GTPases - transla 99.4 3.1E-12 6.8E-17 88.0 10.2 161 9-172 8-201 (394)
304 COG0480 FusA Translation elong 99.4 4.8E-12 1E-16 98.0 11.4 129 10-141 7-152 (697)
305 COG5257 GCD11 Translation init 99.4 3.2E-12 7E-17 88.9 9.3 161 11-174 8-204 (415)
306 TIGR02836 spore_IV_A stage IV 99.4 1.3E-11 2.9E-16 89.3 12.7 155 12-168 16-233 (492)
307 KOG1144 Translation initiation 99.4 9.8E-12 2.1E-16 94.8 11.7 158 12-172 474-687 (1064)
308 KOG3886 GTP-binding protein [S 99.4 1.8E-12 3.9E-17 86.2 5.9 157 12-170 3-176 (295)
309 COG0378 HypB Ni2+-binding GTPa 99.4 1.5E-11 3.2E-16 80.1 9.7 76 87-171 119-200 (202)
310 COG3276 SelB Selenocysteine-sp 99.3 1.3E-11 2.7E-16 89.3 10.3 155 15-171 2-161 (447)
311 PF00350 Dynamin_N: Dynamin fa 99.3 2.5E-11 5.4E-16 79.5 10.5 63 63-127 102-168 (168)
312 PRK09601 GTP-binding protein Y 99.3 9.2E-11 2E-15 84.6 12.5 83 14-96 3-107 (364)
313 smart00053 DYNc Dynamin, GTPas 99.3 6.6E-11 1.4E-15 81.1 11.0 91 62-156 125-233 (240)
314 KOG0705 GTPase-activating prot 99.3 7.9E-12 1.7E-16 92.4 6.7 158 9-173 26-190 (749)
315 TIGR00750 lao LAO/AO transport 99.3 4.8E-11 1E-15 85.0 10.3 101 61-171 126-237 (300)
316 PRK12289 GTPase RsgA; Reviewed 99.3 5E-11 1.1E-15 86.1 9.3 95 74-170 78-173 (352)
317 cd01854 YjeQ_engC YjeQ/EngC. 99.3 4.7E-11 1E-15 84.5 8.8 88 80-169 73-161 (287)
318 cd01859 MJ1464 MJ1464. This f 99.3 3.2E-11 6.9E-16 78.1 7.4 93 77-172 4-96 (156)
319 KOG0468 U5 snRNP-specific prot 99.2 1.4E-10 3E-15 87.8 9.6 116 11-129 126-261 (971)
320 PRK00098 GTPase RsgA; Reviewed 99.2 1.1E-10 2.3E-15 83.1 8.6 84 83-168 78-163 (298)
321 KOG3887 Predicted small GTPase 99.2 4.4E-10 9.5E-15 75.6 10.4 157 14-172 28-202 (347)
322 PRK10463 hydrogenase nickel in 99.2 1.9E-10 4.1E-15 80.4 8.9 55 117-171 230-288 (290)
323 TIGR00993 3a0901s04IAP86 chlor 99.2 2.9E-10 6.2E-15 86.9 10.3 119 12-131 117-250 (763)
324 cd01855 YqeH YqeH. YqeH is an 99.2 1.3E-10 2.8E-15 77.6 7.5 93 75-172 24-125 (190)
325 KOG0460 Mitochondrial translat 99.2 1.9E-10 4.1E-15 80.9 8.4 145 9-155 50-218 (449)
326 PRK12288 GTPase RsgA; Reviewed 99.2 3.7E-10 8E-15 81.6 9.4 86 83-170 118-206 (347)
327 COG5019 CDC3 Septin family pro 99.1 3.2E-09 6.9E-14 75.6 12.9 137 12-151 22-200 (373)
328 COG0012 Predicted GTPase, prob 99.1 2.7E-09 5.8E-14 76.3 12.7 84 13-96 2-108 (372)
329 KOG2655 Septin family protein 99.1 4.6E-09 1E-13 75.2 13.5 141 13-156 21-201 (366)
330 KOG0410 Predicted GTP binding 99.1 4.2E-10 9.1E-15 78.7 6.6 149 13-171 178-340 (410)
331 PF00503 G-alpha: G-protein al 99.1 4.9E-10 1.1E-14 82.8 7.3 112 60-171 234-389 (389)
332 PF03308 ArgK: ArgK protein; 99.0 1.2E-09 2.6E-14 74.7 7.8 99 62-170 122-228 (266)
333 KOG1547 Septin CDC10 and relat 99.0 9.9E-09 2.1E-13 69.1 11.4 142 13-158 46-229 (336)
334 COG5258 GTPBP1 GTPase [General 99.0 6.8E-09 1.5E-13 74.4 11.1 159 8-169 112-336 (527)
335 cd01857 HSR1_MMR1 HSR1/MMR1. 99.0 9E-10 1.9E-14 70.1 5.9 54 15-72 85-138 (141)
336 TIGR03597 GTPase_YqeH ribosome 99.0 1.2E-09 2.6E-14 79.7 7.3 94 72-170 50-151 (360)
337 cd01900 YchF YchF subfamily. 99.0 1.4E-09 3E-14 76.1 6.7 81 16-96 1-103 (274)
338 KOG1143 Predicted translation 99.0 4.7E-09 1E-13 75.0 9.1 152 12-166 166-382 (591)
339 cd01858 NGP_1 NGP-1. Autoanti 99.0 2.7E-09 5.9E-14 69.1 7.0 56 12-71 101-156 (157)
340 KOG0464 Elongation factor G [T 99.0 1.1E-09 2.4E-14 79.2 5.5 133 12-147 36-184 (753)
341 COG1703 ArgK Putative periplas 99.0 9.6E-09 2.1E-13 71.4 9.6 101 61-171 143-253 (323)
342 KOG2486 Predicted GTPase [Gene 99.0 1.1E-09 2.3E-14 75.1 4.7 153 11-170 134-314 (320)
343 cd04178 Nucleostemin_like Nucl 99.0 3E-09 6.5E-14 69.7 6.6 56 12-71 116-171 (172)
344 KOG0463 GTP-binding protein GP 98.9 1.8E-08 4E-13 72.2 10.8 157 8-167 128-353 (641)
345 KOG1486 GTP-binding protein DR 98.9 1.5E-07 3.3E-12 64.0 14.0 100 10-111 59-166 (364)
346 cd01856 YlqF YlqF. Proteins o 98.9 2.9E-09 6.3E-14 69.9 5.7 90 77-171 11-100 (171)
347 cd01849 YlqF_related_GTPase Yl 98.9 1.1E-08 2.3E-13 66.1 8.3 80 87-170 1-83 (155)
348 cd01856 YlqF YlqF. Proteins o 98.9 5.8E-09 1.3E-13 68.5 6.9 58 11-72 113-170 (171)
349 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 8.5E-09 1.8E-13 65.6 7.2 75 82-159 8-84 (141)
350 cd01858 NGP_1 NGP-1. Autoanti 98.9 1.9E-08 4.2E-13 65.1 8.3 87 82-171 5-94 (157)
351 cd01859 MJ1464 MJ1464. This f 98.9 1.2E-08 2.5E-13 66.1 6.9 56 12-71 100-155 (156)
352 TIGR03596 GTPase_YlqF ribosome 98.9 1.9E-08 4.1E-13 71.0 8.4 90 78-172 14-103 (276)
353 cd01855 YqeH YqeH. YqeH is an 98.8 7.7E-09 1.7E-13 69.1 5.6 57 13-72 127-190 (190)
354 PF09547 Spore_IV_A: Stage IV 98.8 4.9E-07 1.1E-11 66.1 15.0 154 12-167 16-232 (492)
355 COG1161 Predicted GTPases [Gen 98.8 1.1E-08 2.4E-13 73.5 6.7 60 10-73 129-188 (322)
356 KOG0099 G protein subunit Galp 98.8 1.7E-08 3.7E-13 68.9 7.0 113 60-172 200-369 (379)
357 PRK09563 rbgA GTPase YlqF; Rev 98.8 2.5E-08 5.4E-13 70.8 7.8 59 11-73 119-177 (287)
358 TIGR03596 GTPase_YlqF ribosome 98.8 1.7E-08 3.7E-13 71.3 6.9 58 11-72 116-173 (276)
359 PRK09563 rbgA GTPase YlqF; Rev 98.8 4.4E-08 9.6E-13 69.5 8.3 99 69-172 7-106 (287)
360 KOG1954 Endocytosis/signaling 98.8 4.3E-08 9.4E-13 70.1 8.0 115 15-133 60-227 (532)
361 COG1618 Predicted nucleotide k 98.8 8.7E-07 1.9E-11 56.4 12.9 148 11-173 3-177 (179)
362 COG5192 BMS1 GTP-binding prote 98.8 1.5E-07 3.2E-12 70.9 10.4 137 9-156 65-210 (1077)
363 KOG0459 Polypeptide release fa 98.7 2.9E-08 6.3E-13 71.5 6.3 157 8-164 74-278 (501)
364 KOG0467 Translation elongation 98.7 8.7E-08 1.9E-12 74.0 8.5 115 11-128 7-135 (887)
365 cd01849 YlqF_related_GTPase Yl 98.7 8.5E-08 1.8E-12 62.0 6.4 58 11-72 98-155 (155)
366 KOG1491 Predicted GTP-binding 98.7 1.4E-07 3E-12 66.7 7.6 88 9-96 16-125 (391)
367 KOG0085 G protein subunit Galp 98.7 2.2E-08 4.7E-13 67.3 3.5 117 57-173 194-350 (359)
368 PRK01889 GTPase RsgA; Reviewed 98.6 3.3E-07 7.2E-12 66.9 9.1 82 83-168 110-193 (356)
369 PRK10416 signal recognition pa 98.6 1.2E-06 2.6E-11 62.9 11.4 96 60-164 195-302 (318)
370 PRK13796 GTPase YqeH; Provisio 98.6 4.5E-07 9.6E-12 66.5 9.2 80 86-170 70-157 (365)
371 PF03193 DUF258: Protein of un 98.6 5.7E-08 1.2E-12 62.5 4.0 59 14-75 36-100 (161)
372 KOG4273 Uncharacterized conser 98.6 1.2E-06 2.6E-11 59.7 10.3 115 15-131 6-123 (418)
373 PRK12288 GTPase RsgA; Reviewed 98.6 2E-07 4.3E-12 67.7 6.6 58 16-76 208-271 (347)
374 KOG0466 Translation initiation 98.6 6.4E-08 1.4E-12 67.6 3.8 109 63-173 126-242 (466)
375 TIGR00092 GTP-binding protein 98.6 2.5E-07 5.5E-12 67.1 6.9 82 14-96 3-108 (368)
376 PRK13796 GTPase YqeH; Provisio 98.6 1.5E-07 3.3E-12 68.9 5.5 58 13-73 160-221 (365)
377 PF06858 NOG1: Nucleolar GTP-b 98.5 4.2E-07 9.1E-12 47.5 5.5 45 84-128 12-58 (58)
378 KOG0465 Mitochondrial elongati 98.5 3.3E-07 7.2E-12 69.3 6.7 120 12-134 38-173 (721)
379 TIGR03348 VI_IcmF type VI secr 98.5 3E-07 6.6E-12 76.5 7.2 111 16-131 114-257 (1169)
380 cd01851 GBP Guanylate-binding 98.5 1.3E-06 2.7E-11 59.9 8.9 87 11-98 5-104 (224)
381 TIGR03597 GTPase_YqeH ribosome 98.5 3.5E-07 7.6E-12 67.0 6.5 58 14-74 155-216 (360)
382 PRK12289 GTPase RsgA; Reviewed 98.5 2.7E-07 5.8E-12 67.0 5.8 56 15-74 174-236 (352)
383 TIGR00064 ftsY signal recognit 98.5 1.1E-06 2.4E-11 61.9 8.5 98 60-166 153-262 (272)
384 PRK14974 cell division protein 98.5 1.7E-07 3.6E-12 67.6 4.1 96 61-165 222-323 (336)
385 KOG3859 Septins (P-loop GTPase 98.5 6.5E-07 1.4E-11 61.9 6.5 116 12-131 41-190 (406)
386 TIGR01425 SRP54_euk signal rec 98.4 3.6E-06 7.8E-11 62.5 10.3 142 12-162 99-280 (429)
387 TIGR00157 ribosome small subun 98.4 5.8E-07 1.2E-11 62.4 5.6 57 14-74 121-183 (245)
388 COG1162 Predicted GTPases [Gen 98.4 5.2E-06 1.1E-10 58.5 9.9 95 74-170 68-165 (301)
389 KOG0448 Mitofusin 1 GTPase, in 98.4 8.6E-06 1.9E-10 62.7 11.6 66 64-132 208-276 (749)
390 COG1162 Predicted GTPases [Gen 98.4 7.1E-07 1.5E-11 62.7 5.4 59 15-76 166-230 (301)
391 cd01854 YjeQ_engC YjeQ/EngC. 98.3 2E-06 4.2E-11 61.2 6.3 59 14-75 162-226 (287)
392 cd03112 CobW_like The function 98.3 3E-06 6.6E-11 54.9 6.7 21 16-36 3-23 (158)
393 KOG1487 GTP-binding protein DR 98.3 5E-06 1.1E-10 57.1 7.0 91 13-105 59-156 (358)
394 PRK00098 GTPase RsgA; Reviewed 98.3 3.2E-06 6.9E-11 60.4 6.3 57 14-74 165-228 (298)
395 PF03266 NTPase_1: NTPase; In 98.2 1E-05 2.3E-10 52.9 7.9 137 15-160 1-163 (168)
396 cd03115 SRP The signal recogni 98.2 9.3E-06 2E-10 53.4 7.7 84 61-151 82-171 (173)
397 PRK13695 putative NTPase; Prov 98.2 7.8E-05 1.7E-09 49.1 11.7 21 14-34 1-21 (174)
398 KOG0447 Dynamin-like GTP bindi 98.2 8.7E-06 1.9E-10 61.5 7.5 69 63-133 413-495 (980)
399 PRK12727 flagellar biosynthesi 98.1 6.5E-05 1.4E-09 57.2 11.3 91 61-160 428-523 (559)
400 PRK00771 signal recognition pa 98.1 3.5E-05 7.5E-10 57.8 9.8 91 62-162 176-273 (437)
401 TIGR00959 ffh signal recogniti 98.1 3.6E-05 7.8E-10 57.5 9.7 93 61-162 182-280 (428)
402 PRK10867 signal recognition pa 98.1 3.9E-05 8.4E-10 57.4 9.5 93 61-162 183-281 (433)
403 cd02038 FleN-like FleN is a me 98.1 1.7E-05 3.6E-10 50.3 6.4 106 18-130 5-110 (139)
404 PRK11889 flhF flagellar biosyn 98.1 2.3E-05 4.9E-10 57.6 7.7 92 62-162 321-418 (436)
405 PRK14722 flhF flagellar biosyn 98.0 4.9E-05 1.1E-09 55.7 8.9 145 13-161 137-321 (374)
406 COG0523 Putative GTPases (G3E 98.0 0.00019 4.2E-09 51.7 11.1 134 16-154 4-184 (323)
407 PRK05703 flhF flagellar biosyn 98.0 5.6E-05 1.2E-09 56.6 8.6 91 61-160 299-396 (424)
408 COG3640 CooC CO dehydrogenase 98.0 0.00015 3.2E-09 49.3 9.7 50 79-130 149-198 (255)
409 KOG0469 Elongation factor 2 [T 97.9 7.6E-06 1.6E-10 61.2 3.3 116 12-130 18-163 (842)
410 cd03114 ArgK-like The function 97.9 4E-05 8.7E-10 49.1 6.2 58 61-128 91-148 (148)
411 KOG1424 Predicted GTP-binding 97.9 2.3E-05 4.9E-10 58.6 5.7 58 12-73 313-370 (562)
412 PRK11537 putative GTP-binding 97.9 0.0001 2.2E-09 53.2 8.7 84 62-152 91-185 (318)
413 KOG2485 Conserved ATP/GTP bind 97.9 1.3E-05 2.9E-10 56.3 3.9 61 11-72 141-206 (335)
414 PF13207 AAA_17: AAA domain; P 97.9 1.5E-05 3.3E-10 49.1 3.0 21 15-35 1-21 (121)
415 PRK08118 topology modulation p 97.8 1.5E-05 3.3E-10 52.1 3.0 21 15-35 3-23 (167)
416 COG3523 IcmF Type VI protein s 97.8 3.2E-05 6.9E-10 63.8 5.0 110 16-131 128-270 (1188)
417 COG0563 Adk Adenylate kinase a 97.8 1.8E-05 3.9E-10 52.2 2.9 23 14-36 1-23 (178)
418 PRK07261 topology modulation p 97.8 2.1E-05 4.7E-10 51.6 3.0 20 15-34 2-21 (171)
419 PRK06731 flhF flagellar biosyn 97.8 0.0003 6.6E-09 49.5 8.8 93 61-162 154-252 (270)
420 COG1419 FlhF Flagellar GTP-bin 97.8 0.00033 7.1E-09 51.5 9.0 140 13-162 203-379 (407)
421 PRK06995 flhF flagellar biosyn 97.8 6.5E-05 1.4E-09 56.9 5.6 90 62-160 335-430 (484)
422 PRK14723 flhF flagellar biosyn 97.8 0.00027 5.8E-09 56.3 9.0 92 62-160 264-362 (767)
423 PF13671 AAA_33: AAA domain; P 97.7 2.7E-05 5.9E-10 49.4 2.8 19 16-34 2-20 (143)
424 PRK14738 gmk guanylate kinase; 97.7 6E-05 1.3E-09 51.1 4.6 28 8-35 8-35 (206)
425 COG0194 Gmk Guanylate kinase [ 97.7 3.2E-05 6.9E-10 50.7 2.9 24 14-37 5-28 (191)
426 cd03111 CpaE_like This protein 97.7 0.00021 4.6E-09 43.1 6.3 102 16-126 2-106 (106)
427 KOG1534 Putative transcription 97.7 4.9E-05 1.1E-09 50.8 3.6 24 12-35 2-25 (273)
428 KOG2484 GTPase [General functi 97.7 4.2E-05 9E-10 55.6 3.5 58 11-72 250-307 (435)
429 PF13521 AAA_28: AAA domain; P 97.7 2.7E-05 5.9E-10 50.7 2.3 22 15-36 1-22 (163)
430 PF13555 AAA_29: P-loop contai 97.7 5.4E-05 1.2E-09 40.6 2.9 20 15-34 25-44 (62)
431 cd02042 ParA ParA and ParB of 97.6 0.00033 7.3E-09 41.9 6.5 82 16-109 2-84 (104)
432 PF11111 CENP-M: Centromere pr 97.6 0.0062 1.3E-07 39.7 13.3 141 8-171 10-152 (176)
433 COG1126 GlnQ ABC-type polar am 97.6 4.4E-05 9.5E-10 51.3 2.8 21 15-35 30-50 (240)
434 cd04178 Nucleostemin_like Nucl 97.6 0.00035 7.5E-09 45.9 6.9 59 87-146 1-59 (172)
435 PLN02200 adenylate kinase fami 97.6 9.3E-05 2E-09 51.1 4.3 26 10-35 40-65 (234)
436 cd02019 NK Nucleoside/nucleoti 97.6 6.2E-05 1.3E-09 41.6 2.8 19 16-34 2-20 (69)
437 cd03110 Fer4_NifH_child This p 97.6 0.00054 1.2E-08 45.3 7.8 86 60-151 91-176 (179)
438 PRK14737 gmk guanylate kinase; 97.6 5.6E-05 1.2E-09 50.3 3.0 23 14-36 5-27 (186)
439 cd02036 MinD Bacterial cell di 97.6 0.0012 2.5E-08 43.5 9.3 84 63-150 64-147 (179)
440 cd01983 Fer4_NifH The Fer4_Nif 97.6 0.00068 1.5E-08 39.7 7.1 69 16-98 2-71 (99)
441 cd00009 AAA The AAA+ (ATPases 97.5 0.00045 9.7E-09 43.5 6.5 24 13-36 19-42 (151)
442 COG1136 SalX ABC-type antimicr 97.5 7.1E-05 1.5E-09 51.0 2.8 22 16-38 34-55 (226)
443 PRK12726 flagellar biosynthesi 97.5 0.00054 1.2E-08 50.4 7.4 92 61-162 285-383 (407)
444 PRK05480 uridine/cytidine kina 97.5 0.00011 2.4E-09 49.9 3.7 26 10-35 3-28 (209)
445 TIGR02475 CobW cobalamin biosy 97.5 0.00075 1.6E-08 49.3 8.1 20 16-35 7-26 (341)
446 PRK06217 hypothetical protein; 97.5 8.3E-05 1.8E-09 49.4 3.0 22 14-35 2-23 (183)
447 TIGR00235 udk uridine kinase. 97.5 0.00011 2.5E-09 49.7 3.7 25 10-34 3-27 (207)
448 PF07015 VirC1: VirC1 protein; 97.5 0.00016 3.5E-09 49.2 4.3 101 61-165 83-187 (231)
449 PRK12724 flagellar biosynthesi 97.5 0.0011 2.3E-08 49.5 8.7 139 13-160 223-398 (432)
450 PRK14530 adenylate kinase; Pro 97.5 0.00011 2.3E-09 50.2 3.2 21 14-34 4-24 (215)
451 PRK03839 putative kinase; Prov 97.5 9.8E-05 2.1E-09 48.9 2.9 21 15-35 2-22 (180)
452 COG1116 TauB ABC-type nitrate/ 97.5 9.6E-05 2.1E-09 50.7 2.8 19 16-34 32-50 (248)
453 PF00005 ABC_tran: ABC transpo 97.5 0.00012 2.6E-09 46.1 3.1 23 15-38 13-35 (137)
454 PF13238 AAA_18: AAA domain; P 97.5 0.00012 2.6E-09 45.5 2.8 20 16-35 1-20 (129)
455 PF00004 AAA: ATPase family as 97.5 0.00012 2.5E-09 45.7 2.8 19 16-34 1-19 (132)
456 cd00071 GMPK Guanosine monopho 97.4 0.00012 2.6E-09 46.2 2.9 20 16-35 2-21 (137)
457 PF04665 Pox_A32: Poxvirus A32 97.4 0.00013 2.9E-09 50.2 3.2 25 11-35 11-35 (241)
458 PRK01889 GTPase RsgA; Reviewed 97.4 0.00016 3.5E-09 53.0 3.8 22 14-35 196-217 (356)
459 COG0552 FtsY Signal recognitio 97.4 0.0016 3.4E-08 46.8 8.5 144 11-164 137-327 (340)
460 smart00382 AAA ATPases associa 97.4 0.00014 3E-09 45.5 3.0 24 14-37 3-26 (148)
461 PRK10078 ribose 1,5-bisphospho 97.4 0.00014 3E-09 48.5 3.1 21 15-35 4-24 (186)
462 KOG2484 GTPase [General functi 97.4 0.00022 4.8E-09 51.9 4.2 77 79-158 140-218 (435)
463 TIGR02322 phosphon_PhnN phosph 97.4 0.00013 2.7E-09 48.3 2.8 21 15-35 3-23 (179)
464 PF03205 MobB: Molybdopterin g 97.4 0.00015 3.3E-09 46.0 3.0 21 15-35 2-22 (140)
465 KOG1424 Predicted GTP-binding 97.4 0.00048 1E-08 51.9 5.9 79 77-156 163-244 (562)
466 TIGR00150 HI0065_YjeE ATPase, 97.4 0.00049 1.1E-08 43.1 5.1 23 14-36 23-45 (133)
467 PRK13949 shikimate kinase; Pro 97.4 0.00015 3.4E-09 47.5 3.0 20 15-34 3-22 (169)
468 cd00820 PEPCK_HprK Phosphoenol 97.4 0.00016 3.4E-09 43.4 2.7 21 14-34 16-36 (107)
469 PRK08233 hypothetical protein; 97.4 0.0002 4.2E-09 47.4 3.4 23 13-35 3-25 (182)
470 COG1161 Predicted GTPases [Gen 97.4 0.00044 9.5E-09 50.1 5.2 92 68-164 16-109 (322)
471 COG4525 TauB ABC-type taurine 97.4 0.00026 5.7E-09 47.0 3.7 23 15-38 33-55 (259)
472 PTZ00088 adenylate kinase 1; P 97.4 0.00019 4E-09 49.4 3.2 23 13-35 6-28 (229)
473 cd03238 ABC_UvrA The excision 97.4 0.00019 4.2E-09 47.3 3.1 22 13-34 21-42 (176)
474 PF07728 AAA_5: AAA domain (dy 97.4 0.00019 4E-09 45.4 2.9 21 15-35 1-21 (139)
475 PRK04195 replication factor C 97.4 0.0027 5.9E-08 48.7 9.7 23 13-35 39-61 (482)
476 KOG3347 Predicted nucleotide k 97.4 0.00016 3.5E-09 45.7 2.4 24 11-34 5-28 (176)
477 PRK14532 adenylate kinase; Pro 97.3 0.00019 4E-09 47.9 3.0 21 15-35 2-22 (188)
478 PRK00625 shikimate kinase; Pro 97.3 0.0002 4.4E-09 47.1 3.0 20 15-34 2-21 (173)
479 cd02023 UMPK Uridine monophosp 97.3 0.00018 4E-09 48.3 2.8 20 16-35 2-21 (198)
480 COG1120 FepC ABC-type cobalami 97.3 0.00019 4E-09 49.9 2.8 20 16-35 31-50 (258)
481 TIGR01360 aden_kin_iso1 adenyl 97.3 0.00019 4.1E-09 47.7 2.8 20 15-34 5-24 (188)
482 TIGR03263 guanyl_kin guanylate 97.3 0.0002 4.4E-09 47.3 2.9 21 15-35 3-23 (180)
483 PRK14531 adenylate kinase; Pro 97.3 0.00025 5.3E-09 47.2 3.1 22 14-35 3-24 (183)
484 PF03215 Rad17: Rad17 cell cyc 97.3 0.0047 1E-07 47.6 10.2 83 87-170 133-228 (519)
485 PRK06547 hypothetical protein; 97.3 0.00031 6.8E-09 46.1 3.5 25 11-35 13-37 (172)
486 cd01130 VirB11-like_ATPase Typ 97.3 0.00025 5.4E-09 47.3 3.1 22 13-34 25-46 (186)
487 cd01428 ADK Adenylate kinase ( 97.3 0.0002 4.4E-09 47.9 2.6 21 15-35 1-21 (194)
488 COG3840 ThiQ ABC-type thiamine 97.3 0.00025 5.5E-09 46.5 2.9 21 15-36 27-47 (231)
489 PRK10751 molybdopterin-guanine 97.3 0.00023 4.9E-09 46.7 2.7 21 14-34 7-27 (173)
490 cd01131 PilT Pilus retraction 97.3 0.00098 2.1E-08 44.9 5.8 21 16-36 4-24 (198)
491 COG3638 ABC-type phosphate/pho 97.3 0.00025 5.3E-09 48.4 2.7 20 16-36 33-52 (258)
492 PRK02496 adk adenylate kinase; 97.3 0.00029 6.3E-09 46.8 3.1 21 14-34 2-22 (184)
493 COG1936 Predicted nucleotide k 97.2 0.00028 6E-09 45.8 2.7 21 14-34 1-21 (180)
494 TIGR01359 UMP_CMP_kin_fam UMP- 97.2 0.00026 5.7E-09 46.9 2.8 20 16-35 2-21 (183)
495 COG1117 PstB ABC-type phosphat 97.2 0.00024 5.2E-09 47.8 2.4 19 16-34 36-54 (253)
496 PF13401 AAA_22: AAA domain; P 97.2 0.00028 6E-09 44.0 2.7 24 14-37 5-28 (131)
497 cd03222 ABC_RNaseL_inhibitor T 97.2 0.0003 6.5E-09 46.5 2.9 24 14-38 26-49 (177)
498 cd02025 PanK Pantothenate kina 97.2 0.00026 5.6E-09 48.5 2.7 19 16-34 2-20 (220)
499 COG3839 MalK ABC-type sugar tr 97.2 0.00027 5.9E-09 51.1 2.8 20 16-35 32-51 (338)
500 PRK00300 gmk guanylate kinase; 97.2 0.00039 8.4E-09 47.0 3.5 24 12-35 4-27 (205)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-43 Score=226.16 Aligned_cols=163 Identities=33% Similarity=0.606 Sum_probs=152.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
-.+||+++|.+|||||+|+.||..+.|.+.+..|+|+++......++++.+++++|||+|||+|+.+...||++++++|+
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~ 87 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIF 87 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCcccc--CHHHHHHHHHcCCe-EEEeccCCCCChHHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQ-YYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~~--~~~~~~~~~~~~~~-~~~~S~~~~~~v~~~~~~l 167 (176)
|||+++.+||+.+..|+..+.+.. .+.|.++|+||+|+.+... ..+...++.+++.+ ++++||+++.||+++|..|
T Consensus 88 vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~l 167 (205)
T KOG0084|consen 88 VYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTL 167 (205)
T ss_pred EEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHH
Confidence 999999999999999999998876 5789999999999986443 34567999999999 9999999999999999999
Q ss_pred HHHHhcC
Q 030504 168 ARKLAGS 174 (176)
Q Consensus 168 ~~~i~~~ 174 (176)
+..+.++
T Consensus 168 a~~lk~~ 174 (205)
T KOG0084|consen 168 AKELKQR 174 (205)
T ss_pred HHHHHHh
Confidence 9988764
No 2
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-42 Score=219.80 Aligned_cols=165 Identities=33% Similarity=0.588 Sum_probs=152.3
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEE
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (176)
....+||+++|..++|||||+.||..+.|.+...+|+|..+....+.+++..++|.+|||+|+|+|.++.+.||++++++
T Consensus 2 ~~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AA 81 (200)
T KOG0092|consen 2 ATREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAA 81 (200)
T ss_pred CcceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEE
Confidence 34689999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCc-cc-cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHH
Q 030504 90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~-~~-~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 166 (176)
|+|||+++.+||+.+..|+..+.+.. ++.-+.++|||+||.. +. .-++...++...++.|||+||+++.|++++|..
T Consensus 82 ivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~ 161 (200)
T KOG0092|consen 82 IVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQA 161 (200)
T ss_pred EEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHH
Confidence 99999999999999999999998875 4566778999999987 33 345677999999999999999999999999999
Q ss_pred HHHHHhcC
Q 030504 167 LARKLAGS 174 (176)
Q Consensus 167 l~~~i~~~ 174 (176)
|++.+.++
T Consensus 162 Ia~~lp~~ 169 (200)
T KOG0092|consen 162 IAEKLPCS 169 (200)
T ss_pred HHHhccCc
Confidence 99998765
No 3
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.7e-42 Score=217.87 Aligned_cols=167 Identities=31% Similarity=0.561 Sum_probs=152.4
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccccccccccc
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 87 (176)
..+.+.+|++++|..+||||||++||..+.|+..|.+|+|+++...++.+.+..+.+++|||+|||+|+.+.+.|++++.
T Consensus 17 ~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~ 96 (221)
T KOG0094|consen 17 GAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 96 (221)
T ss_pred CccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCe
Confidence 44556799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhhhhHHHHHHHHhhhcC--CCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHH
Q 030504 88 CAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
++|+|||+++..+|+...+|++.+..... +.-+++|+||.||.+.. . .++....+++++.-|+++||+.|.||.++
T Consensus 97 vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~l 176 (221)
T KOG0094|consen 97 VAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQL 176 (221)
T ss_pred EEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHH
Confidence 99999999999999999999999987752 46689999999998643 3 34456889999999999999999999999
Q ss_pred HHHHHHHHhcC
Q 030504 164 FLYLARKLAGS 174 (176)
Q Consensus 164 ~~~l~~~i~~~ 174 (176)
|..++..+.+.
T Consensus 177 FrrIaa~l~~~ 187 (221)
T KOG0094|consen 177 FRRIAAALPGM 187 (221)
T ss_pred HHHHHHhccCc
Confidence 99999887764
No 4
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=9.7e-41 Score=226.75 Aligned_cols=174 Identities=99% Similarity=1.602 Sum_probs=156.8
Q ss_pred CCCCCCCCCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccc
Q 030504 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (176)
Q Consensus 1 ~~~~~~~~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 80 (176)
|+++...+.+...+||+++|.+|||||||+++++.+.+...+.++.|.++....+..++..+.+.+|||+|++.+..++.
T Consensus 1 ~~~~~~~~~~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 80 (219)
T PLN03071 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (219)
T ss_pred CCCcccCCcCCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhH
Confidence 56777777778899999999999999999999999999989999999888887777777889999999999999999999
Q ss_pred cccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCCh
Q 030504 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (176)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v 160 (176)
.+++.++++|+|||++++.+++.+..|+..+.+..++.|+++|+||+|+..+....+...+++..++.|++|||++|.|+
T Consensus 81 ~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~i 160 (219)
T PLN03071 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (219)
T ss_pred HHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHHHHHHhcCCEEEEcCCCCCCCH
Confidence 99999999999999999999999999999998777889999999999997655544445777888999999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 030504 161 EKPFLYLARKLAGS 174 (176)
Q Consensus 161 ~~~~~~l~~~i~~~ 174 (176)
+++|.||++.+.+.
T Consensus 161 ~~~f~~l~~~~~~~ 174 (219)
T PLN03071 161 EKPFLYLARKLAGD 174 (219)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999988754
No 5
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.2e-41 Score=209.03 Aligned_cols=168 Identities=29% Similarity=0.502 Sum_probs=154.1
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccccccccccc
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 87 (176)
+.....+||+++|++|+|||+|+.+|..+.+.+....|+|+++......+++..+++.+|||+|+|+|+.+.+.||+++.
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq 85 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ 85 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence 33456799999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCcc--ccCHHHHHHHHHcCCeEEEeccCCCCChHHH
Q 030504 88 CAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR--QVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
++|+|||++.+++|.++..|...+.... +++-.++|+||.|.+.. ...++.+++++++++.|+||||++.+||+..
T Consensus 86 GiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~ 165 (209)
T KOG0080|consen 86 GIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCC 165 (209)
T ss_pred eeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHH
Confidence 9999999999999999999999998776 45557899999998843 3345678999999999999999999999999
Q ss_pred HHHHHHHHhcCC
Q 030504 164 FLYLARKLAGST 175 (176)
Q Consensus 164 ~~~l~~~i~~~~ 175 (176)
|+.++.+|.+-|
T Consensus 166 FeelveKIi~tp 177 (209)
T KOG0080|consen 166 FEELVEKIIETP 177 (209)
T ss_pred HHHHHHHHhcCc
Confidence 999999999876
No 6
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-40 Score=215.09 Aligned_cols=166 Identities=30% Similarity=0.581 Sum_probs=155.1
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
.....+||+++|.++||||+|+.+|..+.+...+..|+|+++...++..++..+.+++|||+|+++++.+..+|++++++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhhcC-CCCEEEEEeCCCCCccc--cCHHHHHHHHHcCCeEEEeccCCCCChHHHHH
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~liv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 165 (176)
+++|||+++..+|+++..|+..+.+..+ +.|.++||||+|+..+. ..+...+++.++|+.|+|+||++|.||.++|.
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~ 167 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFL 167 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHH
Confidence 9999999999999999999999998864 89999999999998733 34456799999999999999999999999999
Q ss_pred HHHHHHhcC
Q 030504 166 YLARKLAGS 174 (176)
Q Consensus 166 ~l~~~i~~~ 174 (176)
.|++.+.++
T Consensus 168 ~La~~i~~k 176 (207)
T KOG0078|consen 168 SLARDILQK 176 (207)
T ss_pred HHHHHHHhh
Confidence 999998854
No 7
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.6e-41 Score=212.95 Aligned_cols=163 Identities=33% Similarity=0.554 Sum_probs=153.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
..+|++++|..|||||+|+.+|...+|++.+..|+|+++....++++++.+++++|||+|+|.+++..+.||+.+.++++
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalL 84 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALL 84 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEE
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCcccc--CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
|||++++++|..+..|+..+.+.. +|.-+++++||+||..++. .++...+++++++.++++||++++|++|+|....
T Consensus 85 Vydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nta 164 (216)
T KOG0098|consen 85 VYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINTA 164 (216)
T ss_pred EEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHHH
Confidence 999999999999999999998884 8999999999999986544 4456799999999999999999999999999999
Q ss_pred HHHhcC
Q 030504 169 RKLAGS 174 (176)
Q Consensus 169 ~~i~~~ 174 (176)
..|++.
T Consensus 165 ~~Iy~~ 170 (216)
T KOG0098|consen 165 KEIYRK 170 (216)
T ss_pred HHHHHH
Confidence 988754
No 8
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=2.8e-40 Score=219.31 Aligned_cols=163 Identities=22% Similarity=0.499 Sum_probs=147.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
..+||+++|..|||||||+.+|..+.+...+.++.+.++....+..++..+.+.+|||+|++++..++..+++.+|++++
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill 84 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL 84 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence 45999999999999999999999999988888888888877777788888999999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcc-c-cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-Q-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~-~-~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
|||++++.+|+.+..|+..+....++.|+++|+||.|+... . ...+...+++..++.+++|||++|.||+++|.++++
T Consensus 85 VfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~ 164 (189)
T cd04121 85 VYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELAR 164 (189)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999999999999877789999999999999753 2 344567888999999999999999999999999999
Q ss_pred HHhcC
Q 030504 170 KLAGS 174 (176)
Q Consensus 170 ~i~~~ 174 (176)
.+..+
T Consensus 165 ~i~~~ 169 (189)
T cd04121 165 IVLMR 169 (189)
T ss_pred HHHHh
Confidence 87643
No 9
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=1e-39 Score=214.42 Aligned_cols=161 Identities=28% Similarity=0.465 Sum_probs=142.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|.+++|||+|+.+|..+.+...+.+|.+..+ ......++..+++.+|||+|+++++.++..++++++++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 6999999999999999999999999988999998665 445667888899999999999999999999999999999999
Q ss_pred eCCChhhhhhH-HHHHHHHhhhcCCCCEEEEEeCCCCCcc------------ccCHHHHHHHHHcCC-eEEEeccCCCCC
Q 030504 94 DVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR------------QVKAKQVTFHRKKNL-QYYEISAKSNYN 159 (176)
Q Consensus 94 d~~~~~s~~~~-~~~~~~~~~~~~~~p~liv~nK~Dl~~~------------~~~~~~~~~~~~~~~-~~~~~S~~~~~~ 159 (176)
|++++.+|+.+ ..|+..+....++.|+++|+||+|+.++ ...++...+++..++ .|+||||++|.|
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n 160 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQN 160 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccC
Confidence 99999999998 6899988776678999999999999653 223456688888887 699999999999
Q ss_pred hHHHHHHHHHHHhcCC
Q 030504 160 FEKPFLYLARKLAGST 175 (176)
Q Consensus 160 v~~~~~~l~~~i~~~~ 175 (176)
|+++|+.+++.+.+.|
T Consensus 161 V~~~F~~~~~~~~~~~ 176 (176)
T cd04133 161 VKAVFDAAIKVVLQPP 176 (176)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999999876543
No 10
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=2e-39 Score=217.05 Aligned_cols=161 Identities=29% Similarity=0.601 Sum_probs=142.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+.|+++|..|||||||+++|..+.+...+.+|.|.++....+..++..+.+.+|||+|+++++.++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 36899999999999999999999999989999998888888888888999999999999999999999999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCc-cccC-HHHHHHHHHc-CCeEEEeccCCCCChHHHHHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~-~~~~-~~~~~~~~~~-~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
|++++.+|+.+..|+..+.+.. ++.|+++|+||+|+.. +... .+..+++++. ++.+++|||++|.|++++|.|+++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999998887654 5799999999999964 3332 3445677774 789999999999999999999999
Q ss_pred HHhcC
Q 030504 170 KLAGS 174 (176)
Q Consensus 170 ~i~~~ 174 (176)
.+.++
T Consensus 161 ~~~~~ 165 (202)
T cd04120 161 DILKK 165 (202)
T ss_pred HHHHh
Confidence 87643
No 11
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=4.3e-39 Score=212.67 Aligned_cols=162 Identities=23% Similarity=0.397 Sum_probs=143.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
...+||+++|.+++|||||+++|..+.+...+.||.+..+ ...+.+++..+.+.+|||+|++.+..+++.+++++|+++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 4578999999999999999999999999999999998655 355677888999999999999999999999999999999
Q ss_pred EEEeCCChhhhhhH-HHHHHHHhhhcCCCCEEEEEeCCCCCcc--------------ccCHHHHHHHHHcCC-eEEEecc
Q 030504 91 IMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR--------------QVKAKQVTFHRKKNL-QYYEISA 154 (176)
Q Consensus 91 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~liv~nK~Dl~~~--------------~~~~~~~~~~~~~~~-~~~~~S~ 154 (176)
+|||++++.+|+.+ ..|+..+.+..++.|+++|+||+|+.+. ....+..+++++.++ +|+||||
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA 161 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 161 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCc
Confidence 99999999999997 7899998887788999999999998641 223457799999996 8999999
Q ss_pred CCCCC-hHHHHHHHHHHHhc
Q 030504 155 KSNYN-FEKPFLYLARKLAG 173 (176)
Q Consensus 155 ~~~~~-v~~~~~~l~~~i~~ 173 (176)
++|.| ++++|..+++.+..
T Consensus 162 k~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 162 LQSENSVRDIFHVATLACVN 181 (182)
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99998 99999999987653
No 12
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=8.5e-39 Score=209.15 Aligned_cols=163 Identities=86% Similarity=1.412 Sum_probs=147.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|++|||||||+++++.+.+...+.++.+.+........+...+.+.+|||+|++.+...+..++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888999988887777777778899999999999999988999999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHHHhc
Q 030504 94 DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
|++++.+++.+..|+..+.....+.|+++|+||+|+..+....+...+++..++.++++||++|.|++++|++|++.+.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence 99999999999999999988777899999999999986555555666777788999999999999999999999999987
Q ss_pred CCC
Q 030504 174 STD 176 (176)
Q Consensus 174 ~~~ 176 (176)
.|+
T Consensus 161 ~~~ 163 (166)
T cd00877 161 NPN 163 (166)
T ss_pred ccc
Confidence 663
No 13
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=8.6e-39 Score=213.39 Aligned_cols=162 Identities=31% Similarity=0.531 Sum_probs=140.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
..+||+++|..+||||||+.+|..+.+...+.||.+..+. .....++..+.+.+|||+|+++++.++..+++++|++|+
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il 80 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII 80 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence 4589999999999999999999999998889999986543 345677888999999999999999999999999999999
Q ss_pred EEeCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCccc--------------cCHHHHHHHHHcC-CeEEEeccC
Q 030504 92 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ--------------VKAKQVTFHRKKN-LQYYEISAK 155 (176)
Q Consensus 92 v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~--------------~~~~~~~~~~~~~-~~~~~~S~~ 155 (176)
|||++++.+|+.+. .|...+....++.|+++|+||+||.+.. ...+...++++.+ +.+++|||+
T Consensus 81 vydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 81 CFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 99999999999996 5888777666789999999999996431 1234567888888 699999999
Q ss_pred CCCChHHHHHHHHHHHhcC
Q 030504 156 SNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 156 ~~~~v~~~~~~l~~~i~~~ 174 (176)
+|.|++++|.++++.+...
T Consensus 161 ~g~~v~e~f~~l~~~~~~~ 179 (191)
T cd01875 161 NQDGVKEVFAEAVRAVLNP 179 (191)
T ss_pred CCCCHHHHHHHHHHHHhcc
Confidence 9999999999999987653
No 14
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=2.6e-39 Score=204.18 Aligned_cols=166 Identities=31% Similarity=0.631 Sum_probs=150.7
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEE
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (176)
....+||+++|.+|+|||||+++|...+|...+..|+|.++..+.+.++++.+.+++|||+|+|+|+++..++|+++|.+
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhhhhHHHHHHHHhhhc-----CCCCEEEEEeCCCCCc---ccc-CHHHHHHHHHcC-CeEEEeccCCCCC
Q 030504 90 IIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKN---RQV-KAKQVTFHRKKN-LQYYEISAKSNYN 159 (176)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~liv~nK~Dl~~---~~~-~~~~~~~~~~~~-~~~~~~S~~~~~~ 159 (176)
++|||++++.+|+.+..|...+.... ...|++++|||.|+.. +.+ ...++.+++..| ++|||+||+...|
T Consensus 86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~N 165 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATN 165 (210)
T ss_pred EEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEeccccccc
Confidence 99999999999999999999887653 3679999999999975 333 345778888875 8999999999999
Q ss_pred hHHHHHHHHHHHhcCC
Q 030504 160 FEKPFLYLARKLAGST 175 (176)
Q Consensus 160 v~~~~~~l~~~i~~~~ 175 (176)
|.++|..+++.+.+..
T Consensus 166 V~~AFe~ia~~aL~~E 181 (210)
T KOG0394|consen 166 VDEAFEEIARRALANE 181 (210)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999877654
No 15
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.6e-38 Score=215.99 Aligned_cols=167 Identities=20% Similarity=0.321 Sum_probs=146.0
Q ss_pred CCCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccc
Q 030504 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (176)
Q Consensus 7 ~~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 86 (176)
+......+||+++|.++||||+|+++|..+.+...+.||.+..+. ..+.+++..+.+.+|||+|++.+..++..+++++
T Consensus 7 ~~~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~a 85 (232)
T cd04174 7 PQPLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDS 85 (232)
T ss_pred CcCceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCC
Confidence 344567899999999999999999999999999999999986654 4567788899999999999999999999999999
Q ss_pred cEEEEEEeCCChhhhhhH-HHHHHHHhhhcCCCCEEEEEeCCCCCc-------------c-ccCHHHHHHHHHcCC-eEE
Q 030504 87 QCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-------------R-QVKAKQVTFHRKKNL-QYY 150 (176)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~liv~nK~Dl~~-------------~-~~~~~~~~~~~~~~~-~~~ 150 (176)
|++++|||++++.+|+.+ ..|+..+....++.|+++|+||+|+.. + ....+...++++.++ .|+
T Consensus 86 d~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~ 165 (232)
T cd04174 86 DAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYL 165 (232)
T ss_pred cEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEE
Confidence 999999999999999985 789998887777899999999999863 1 223457799999998 699
Q ss_pred EeccCCCC-ChHHHHHHHHHHHhcC
Q 030504 151 EISAKSNY-NFEKPFLYLARKLAGS 174 (176)
Q Consensus 151 ~~S~~~~~-~v~~~~~~l~~~i~~~ 174 (176)
+|||++|. |++++|..++..+.++
T Consensus 166 EtSAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 166 ECSAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred EccCCcCCcCHHHHHHHHHHHHHHh
Confidence 99999998 8999999999987654
No 16
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.1e-38 Score=208.96 Aligned_cols=159 Identities=23% Similarity=0.388 Sum_probs=140.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
.+||+++|.+|||||||+++|..+.+...+.||.+..+. ..+.+++..+.+.+|||+|++.+..+.+.+++++|++++|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 379999999999999999999999999889999876653 4567788899999999999999999999999999999999
Q ss_pred EeCCChhhhhhH-HHHHHHHhhhcCCCCEEEEEeCCCCCcc--------------ccCHHHHHHHHHcCC-eEEEeccCC
Q 030504 93 FDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR--------------QVKAKQVTFHRKKNL-QYYEISAKS 156 (176)
Q Consensus 93 ~d~~~~~s~~~~-~~~~~~~~~~~~~~p~liv~nK~Dl~~~--------------~~~~~~~~~~~~~~~-~~~~~S~~~ 156 (176)
||++++.+|+.+ ..|+..+.+..++.|+++|+||+||.+. ...++..+++++.++ .|+||||++
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~ 159 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFT 159 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCc
Confidence 999999999996 7899988887789999999999999541 223457789999997 899999999
Q ss_pred CCC-hHHHHHHHHHHHh
Q 030504 157 NYN-FEKPFLYLARKLA 172 (176)
Q Consensus 157 ~~~-v~~~~~~l~~~i~ 172 (176)
|+| ++++|..+++.+.
T Consensus 160 ~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 160 SEKSVRDIFHVATMACL 176 (178)
T ss_pred CCcCHHHHHHHHHHHHh
Confidence 995 9999999998655
No 17
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=5.5e-38 Score=205.53 Aligned_cols=162 Identities=33% Similarity=0.546 Sum_probs=144.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
.+||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+|||+|++++...+..++++++++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 37999999999999999999999999888888888888777777888889999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc--cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
||++++.+++.+..|+..+.... ++.|+++|+||+|+.... ...+..++++..+++++++||++|.|++++|.++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998876553 578999999999997543 234566888888999999999999999999999999
Q ss_pred HHhcC
Q 030504 170 KLAGS 174 (176)
Q Consensus 170 ~i~~~ 174 (176)
.+.++
T Consensus 162 ~~~~~ 166 (166)
T cd04122 162 KIYQN 166 (166)
T ss_pred HHhhC
Confidence 88653
No 18
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=6.1e-38 Score=211.05 Aligned_cols=161 Identities=35% Similarity=0.602 Sum_probs=142.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEec-CcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
+||+++|.+|||||||+++|..+.+...+.+|.+.++....+..+ +..+.+.+|||+|++.+..++..++++++++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999999988899999988777777776 7889999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhc-----CCCCEEEEEeCCCCCc--cccCHHHHHHHHHcC-CeEEEeccCCCCChHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKN--RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~liv~nK~Dl~~--~~~~~~~~~~~~~~~-~~~~~~S~~~~~~v~~~~ 164 (176)
||++++.+|+.+..|+..+.... .+.|+++|+||+|+.+ .....+..++++..+ +.++++||++|.|++++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 99999999999999988776532 4789999999999973 334445668888888 699999999999999999
Q ss_pred HHHHHHHhcC
Q 030504 165 LYLARKLAGS 174 (176)
Q Consensus 165 ~~l~~~i~~~ 174 (176)
++|++.+.+.
T Consensus 161 ~~l~~~l~~~ 170 (201)
T cd04107 161 RFLVKNILAN 170 (201)
T ss_pred HHHHHHHHHh
Confidence 9999987654
No 19
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=3.1e-39 Score=196.99 Aligned_cols=160 Identities=33% Similarity=0.604 Sum_probs=151.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
-++.+|+|.+|+|||+|+.+|..+.|...|..|+|.++...++.+++..+++++||++|+|+|+.+...++++.+++++|
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vV 87 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 87 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEE
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc--CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
||+++.+||.+...|++.+...++..|-++|+||+|++.+.. .++++.++.+.++.+||+|++.+.|++.+|.-|.++
T Consensus 88 YDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~q 167 (198)
T KOG0079|consen 88 YDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCITKQ 167 (198)
T ss_pred EECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHHH
Confidence 999999999999999999999999999999999999997654 446789999999999999999999999999998887
Q ss_pred Hh
Q 030504 171 LA 172 (176)
Q Consensus 171 i~ 172 (176)
..
T Consensus 168 vl 169 (198)
T KOG0079|consen 168 VL 169 (198)
T ss_pred HH
Confidence 54
No 20
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=5.2e-38 Score=209.93 Aligned_cols=156 Identities=87% Similarity=1.413 Sum_probs=143.2
Q ss_pred EcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEEeCCCh
Q 030504 19 VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR 98 (176)
Q Consensus 19 ~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 98 (176)
+|.++||||||+++|+.+.+...+.+|.|.++....+..++..+.+.+|||+|++++..++..++++++++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999999888899999999888888888899999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHHHhcC
Q 030504 99 LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 99 ~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~i~~~ 174 (176)
.+++.+..|+..+.+..++.|+++|+||+|+..+....+...+++..++.|++|||++|.|++++|.||++.+.+.
T Consensus 81 ~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 81 VTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999887779999999999999766555555677888899999999999999999999999988664
No 21
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=8.4e-38 Score=205.46 Aligned_cols=161 Identities=29% Similarity=0.487 Sum_probs=140.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
.+||+++|.+|||||||+++|..+.+...+.++.+..+ ......++..+.+.+|||+|++++..++..+++.+|++++|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 48999999999999999999999999888888887444 34466777888999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
||++++.+|+.+..|+..+.+.. ++.|+++|+||+|+.... . ..+...+++..++++++|||++|.|++++|+|++
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 99999999999998887776642 579999999999996532 3 3356678888899999999999999999999999
Q ss_pred HHHhcC
Q 030504 169 RKLAGS 174 (176)
Q Consensus 169 ~~i~~~ 174 (176)
+.+.++
T Consensus 161 ~~~~~~ 166 (172)
T cd04141 161 REIRRK 166 (172)
T ss_pred HHHHHh
Confidence 987754
No 22
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-38 Score=203.93 Aligned_cols=163 Identities=31% Similarity=0.520 Sum_probs=153.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
.-.+||+++|.+++|||-|+.||..+.|..+..+|+|+++......++++.++.++|||+|+|+|++...+||+++.+++
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl 91 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 91 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeE
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCc--cccCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN--RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
+|||++...+|+.+..|+..+.... +++++++|+||+||.. ....++...++...++.++++||+++.||+++|..+
T Consensus 92 lVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~ 171 (222)
T KOG0087|consen 92 LVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERV 171 (222)
T ss_pred EEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHHHH
Confidence 9999999999999999999999886 7999999999999986 344566789999999999999999999999999999
Q ss_pred HHHHhc
Q 030504 168 ARKLAG 173 (176)
Q Consensus 168 ~~~i~~ 173 (176)
+..|..
T Consensus 172 l~~I~~ 177 (222)
T KOG0087|consen 172 LTEIYK 177 (222)
T ss_pred HHHHHH
Confidence 988764
No 23
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=1.4e-37 Score=205.81 Aligned_cols=161 Identities=24% Similarity=0.394 Sum_probs=140.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|.+|+|||||+++|..+.+...+.||.|.++....+..++..+.+.+||++|++++...+..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999999889999998887777888888899999999999999999999999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhcC-CCCEEEEEeCCCCCcc-------ccCHHHHHHHHHcCCeEEEeccCCCCChHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNR-------QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~-~~p~liv~nK~Dl~~~-------~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 165 (176)
|++++.+++.+..|+..+.+..+ ..| ++|+||+|+... ....+...+++..++++++|||++|.|++++|+
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999998876543 456 678999999531 112334567788889999999999999999999
Q ss_pred HHHHHHhcCC
Q 030504 166 YLARKLAGST 175 (176)
Q Consensus 166 ~l~~~i~~~~ 175 (176)
++++.+.+-|
T Consensus 160 ~l~~~l~~~~ 169 (182)
T cd04128 160 IVLAKAFDLP 169 (182)
T ss_pred HHHHHHHhcC
Confidence 9999887643
No 24
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.8e-38 Score=191.98 Aligned_cols=161 Identities=27% Similarity=0.558 Sum_probs=150.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+|++++|...+|||+|+.+++...|...+.+|.|+++..+++.-..+.+++++|||+|+|+++.+.-+++++++++|++|
T Consensus 22 fKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmy 101 (193)
T KOG0093|consen 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMY 101 (193)
T ss_pred eeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEEE
Confidence 59999999999999999999999999999999999999998888889999999999999999999999999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccccC--HHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVK--AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
|+++.++|..+..|..++...+ .+.|+++++||||+.+++.. +..+.++.++|..|||+||+.+.||+++|+.++..
T Consensus 102 DitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~~ 181 (193)
T KOG0093|consen 102 DITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLVDI 181 (193)
T ss_pred ecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHHHH
Confidence 9999999999999999998876 69999999999999976654 34679999999999999999999999999999988
Q ss_pred HhcC
Q 030504 171 LAGS 174 (176)
Q Consensus 171 i~~~ 174 (176)
|-++
T Consensus 182 Ic~k 185 (193)
T KOG0093|consen 182 ICDK 185 (193)
T ss_pred HHHH
Confidence 7654
No 25
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=6e-37 Score=199.60 Aligned_cols=160 Identities=30% Similarity=0.510 Sum_probs=141.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|.+|||||||++++..+.+.+.+.++.+.+........++..+.+.+|||+|++.+...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999998888888877777777777888899999999999999999999999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHHHhc
Q 030504 94 DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
|++++.+++.+..|+..+.+..++.|+++|+||+|+.... ..+..++++..+++++++||++|.|++++|+.+++.+.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 159 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSV-TQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAVS 159 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhH-HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999987776789999999999985432 234456677778999999999999999999999998775
Q ss_pred C
Q 030504 174 S 174 (176)
Q Consensus 174 ~ 174 (176)
.
T Consensus 160 ~ 160 (161)
T cd04124 160 Y 160 (161)
T ss_pred c
Confidence 4
No 26
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=5.1e-37 Score=199.89 Aligned_cols=157 Identities=28% Similarity=0.542 Sum_probs=140.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|++|+|||||+++++.+.+.+.+.++.+.++........+..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999998888999998877777777778899999999999999999999999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc--cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
|++++.+|+.+..|+..+.... .+.|+++|+||.|+.... ...+...+++..++++++|||++|.|++++|.+|++.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 9999999999999999887654 378999999999996533 2345667888888999999999999999999999874
No 27
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=5.8e-37 Score=201.95 Aligned_cols=157 Identities=25% Similarity=0.433 Sum_probs=135.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|.+|+|||||+++|..+.+...+.||.+..+. .....++..+.+.+|||+|++++...+..+++++|++|+||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 79999999999999999999999998889999986554 34566778899999999999999999999999999999999
Q ss_pred eCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCccc-------------c-CHHHHHHHHHcC-CeEEEeccCCC
Q 030504 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKN-LQYYEISAKSN 157 (176)
Q Consensus 94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~-------------~-~~~~~~~~~~~~-~~~~~~S~~~~ 157 (176)
|++++.+|+.+. .|+..+....++.|+++|+||+|+.+.. + ..+...++++.+ +.+++|||++|
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg 160 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQ 160 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCC
Confidence 999999999997 5888887666789999999999986431 1 223446777776 79999999999
Q ss_pred CChHHHHHHHHHHH
Q 030504 158 YNFEKPFLYLARKL 171 (176)
Q Consensus 158 ~~v~~~~~~l~~~i 171 (176)
.|++++|+.+++..
T Consensus 161 ~~v~~~f~~~~~~~ 174 (175)
T cd01874 161 KGLKNVFDEAILAA 174 (175)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999854
No 28
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=6.5e-37 Score=200.24 Aligned_cols=160 Identities=28% Similarity=0.579 Sum_probs=141.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|++|||||||++++..+.+...+.++.|.++.......++..+.+.+|||+|++++...+..+++.++++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999998888899887777666666777899999999999999999999999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCcccc--CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
|++++.+++.+..|+..+.... ++.|+++|+||+|+..... ..+...+++..+++++++||+++.|++++|+++++.
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI 161 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 9999999999999999887654 4789999999999975432 344567778888999999999999999999999988
Q ss_pred Hhc
Q 030504 171 LAG 173 (176)
Q Consensus 171 i~~ 173 (176)
+.+
T Consensus 162 ~~~ 164 (165)
T cd01865 162 ICD 164 (165)
T ss_pred HHh
Confidence 754
No 29
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=1.1e-36 Score=199.32 Aligned_cols=161 Identities=32% Similarity=0.605 Sum_probs=143.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
.+||+++|++|||||||++++..+.+...+.++.+.++........+..+.+.+||+||++++...+..+++++|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 48999999999999999999999988888888888887777777777889999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
||++++.+++.+..|+..+.... ++.|+++|+||+|+.... . ..+...+++..+++++++||++|.|++++|.++++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 161 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR 161 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence 99999999999999999887665 578999999999986533 2 24456788888999999999999999999999999
Q ss_pred HHhc
Q 030504 170 KLAG 173 (176)
Q Consensus 170 ~i~~ 173 (176)
.+.+
T Consensus 162 ~~~~ 165 (166)
T cd01869 162 EIKK 165 (166)
T ss_pred HHHh
Confidence 8864
No 30
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=9.5e-37 Score=199.84 Aligned_cols=162 Identities=30% Similarity=0.584 Sum_probs=144.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
.+||+++|++|+|||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.+...+..+++++|++++|
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v 82 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILV 82 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEE
Confidence 58999999999999999999999999998999998888777777788889999999999999998899999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc--cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
||++++.+++.+..|+..+.... .+.|+++|+||+|+.... ...+...++...+++++++||++|.|++++|.++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 162 (167)
T cd01867 83 YDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAK 162 (167)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999998887654 578999999999997532 234456788888999999999999999999999999
Q ss_pred HHhcC
Q 030504 170 KLAGS 174 (176)
Q Consensus 170 ~i~~~ 174 (176)
++.++
T Consensus 163 ~~~~~ 167 (167)
T cd01867 163 DIKKK 167 (167)
T ss_pred HHHhC
Confidence 88653
No 31
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=1.3e-36 Score=200.06 Aligned_cols=157 Identities=27% Similarity=0.472 Sum_probs=135.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
++||+++|.+|||||||+.+++.+.+...+.++.+. ........++..+.+.+|||+|++.+...+..+++++|++|+|
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 79 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEE
Confidence 479999999999999999999999998888888864 3344556777889999999999999999999999999999999
Q ss_pred EeCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCcc--------------ccCHHHHHHHHHcCC-eEEEeccCC
Q 030504 93 FDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR--------------QVKAKQVTFHRKKNL-QYYEISAKS 156 (176)
Q Consensus 93 ~d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~--------------~~~~~~~~~~~~~~~-~~~~~S~~~ 156 (176)
||++++.+|+.+. .|+..+....++.|+++|+||+|+... ....+..+++++.+. .+++|||++
T Consensus 80 ~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 159 (174)
T cd01871 80 FSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 159 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence 9999999999996 688877766678999999999999642 123345678888884 999999999
Q ss_pred CCChHHHHHHHHHH
Q 030504 157 NYNFEKPFLYLARK 170 (176)
Q Consensus 157 ~~~v~~~~~~l~~~ 170 (176)
|.|++++|+.+++.
T Consensus 160 ~~~i~~~f~~l~~~ 173 (174)
T cd01871 160 QKGLKTVFDEAIRA 173 (174)
T ss_pred cCCHHHHHHHHHHh
Confidence 99999999999875
No 32
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=9.4e-37 Score=206.37 Aligned_cols=161 Identities=24% Similarity=0.423 Sum_probs=139.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
.+||+++|.+|||||||+++|..+.+...+.||.+..+. ..+.+++..+.+.+|||+|++.+..++..+++++|++++|
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv 79 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC 79 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence 379999999999999999999999999899999876554 4567788899999999999999999999999999999999
Q ss_pred EeCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCcc--------------ccCHHHHHHHHHcCC-eEEEeccCC
Q 030504 93 FDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR--------------QVKAKQVTFHRKKNL-QYYEISAKS 156 (176)
Q Consensus 93 ~d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~--------------~~~~~~~~~~~~~~~-~~~~~S~~~ 156 (176)
||++++.+|+.+. .|...+....++.|+++|+||+|+... ...++...++++.++ .|+||||++
T Consensus 80 fdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 80 FDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 9999999999995 677777666789999999999999642 122356688888885 899999999
Q ss_pred CCC-hHHHHHHHHHHHhcC
Q 030504 157 NYN-FEKPFLYLARKLAGS 174 (176)
Q Consensus 157 ~~~-v~~~~~~l~~~i~~~ 174 (176)
+.+ |+++|..++.....+
T Consensus 160 ~~~~V~~~F~~~~~~~~~~ 178 (222)
T cd04173 160 SERSVRDVFHVATVASLGR 178 (222)
T ss_pred CCcCHHHHHHHHHHHHHhc
Confidence 885 999999999977654
No 33
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=1.3e-36 Score=199.18 Aligned_cols=160 Identities=26% Similarity=0.536 Sum_probs=141.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|++|||||||++++..+++...+.++.+.++....+..++..+.+.+|||+|++.+...+..+++++|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999998889999998888888888888999999999999999989999999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhc------CCCCEEEEEeCCCCCc-cc-cCHHHHHHHHHcCCeEEEeccCCCCChHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRVC------ENIPIVLCGNKVDVKN-RQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~------~~~p~liv~nK~Dl~~-~~-~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 165 (176)
|++++.+++.+..|+..+.... .+.|+++|+||+|+.. .. ...+...+++..+++++++||++|.|++++|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 9999999999999998887653 3689999999999973 22 23344567788889999999999999999999
Q ss_pred HHHHHHhc
Q 030504 166 YLARKLAG 173 (176)
Q Consensus 166 ~l~~~i~~ 173 (176)
+|++.+.+
T Consensus 161 ~l~~~l~~ 168 (168)
T cd04119 161 TLFSSIVD 168 (168)
T ss_pred HHHHHHhC
Confidence 99998753
No 34
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=1.4e-36 Score=201.29 Aligned_cols=163 Identities=31% Similarity=0.547 Sum_probs=142.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEec----------CcEEEEEEEeCCCcccccccccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN----------CGKIRFYCWDTAGQEKFGGLRDG 81 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~D~~g~~~~~~~~~~ 81 (176)
..+||+++|++|||||||++++..+.+...+.++.+.++........ +..+.+.+||++|++.+...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 35899999999999999999999999998889999877776655443 45689999999999999999999
Q ss_pred ccccccEEEEEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCC
Q 030504 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSN 157 (176)
Q Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~ 157 (176)
+++++|++++|||++++.+++.+..|+..+.... ++.|+++|+||+|+.... . ..+...+++..+++++++||++|
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~ 162 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATG 162 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 9999999999999999999999999998887653 578999999999997532 2 34466888889999999999999
Q ss_pred CChHHHHHHHHHHHhcC
Q 030504 158 YNFEKPFLYLARKLAGS 174 (176)
Q Consensus 158 ~~v~~~~~~l~~~i~~~ 174 (176)
.|++++|++|++.+.++
T Consensus 163 ~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 163 TNVEKAVERLLDLVMKR 179 (180)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999988764
No 35
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=2.4e-36 Score=202.90 Aligned_cols=162 Identities=32% Similarity=0.564 Sum_probs=144.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
..+||+++|++|||||||+++|..+.+...+.+|.+.++....+..++..+.+.+||+||++.+...+..++++++++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 46999999999999999999999998888888999888777777777788899999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc--CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
|||++++.+++.+..|+..+....+..|+++|+||+|+..... ..+...+++..++.++++|+++|.|++++|+++++
T Consensus 85 v~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~ 164 (199)
T cd04110 85 VYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITE 164 (199)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHH
Confidence 9999999999999999998877777899999999999976432 24456778888899999999999999999999999
Q ss_pred HHhc
Q 030504 170 KLAG 173 (176)
Q Consensus 170 ~i~~ 173 (176)
.+..
T Consensus 165 ~~~~ 168 (199)
T cd04110 165 LVLR 168 (199)
T ss_pred HHHH
Confidence 8764
No 36
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-37 Score=191.06 Aligned_cols=162 Identities=30% Similarity=0.564 Sum_probs=149.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
-+|++++|+.|+|||+|+++|..+++.....+|+|+++....+.+..+.+++++|||+|+|+|++..+.||+++.++++|
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLV 88 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 88 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEE
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCcccc--CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
||++++++|+.+..|+....... +++-+++++||.||..... -.++-.++.+..+.++++|+++|+||+|.|-..++
T Consensus 89 YD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~~ 168 (214)
T KOG0086|consen 89 YDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCAR 168 (214)
T ss_pred EeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHHH
Confidence 99999999999999999888764 5778899999999986443 33566899999999999999999999999999888
Q ss_pred HHhcC
Q 030504 170 KLAGS 174 (176)
Q Consensus 170 ~i~~~ 174 (176)
.|..+
T Consensus 169 tIl~k 173 (214)
T KOG0086|consen 169 TILNK 173 (214)
T ss_pred HHHHH
Confidence 87654
No 37
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=2e-36 Score=197.42 Aligned_cols=158 Identities=36% Similarity=0.697 Sum_probs=146.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 94 (176)
||+++|+++||||||+++|..+.+.+.+.++.|.+.....+..++..+.+.+||++|++.+...+..+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred CCChhhhhhHHHHHHHHhhhcC-CCCEEEEEeCCCCCc-ccc-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHHH
Q 030504 95 VTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (176)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~-~~p~liv~nK~Dl~~-~~~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~i 171 (176)
++++.+++.+..|+..+....+ +.|+++++||+|+.. +.. ..+...++++++++|+++|++++.|+.++|..+++.+
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998876 699999999999986 333 3456789999999999999999999999999999987
Q ss_pred h
Q 030504 172 A 172 (176)
Q Consensus 172 ~ 172 (176)
.
T Consensus 161 ~ 161 (162)
T PF00071_consen 161 L 161 (162)
T ss_dssp H
T ss_pred h
Confidence 5
No 38
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=2.5e-36 Score=198.14 Aligned_cols=161 Identities=28% Similarity=0.449 Sum_probs=140.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 94 (176)
||+++|.+|||||||+++|+.+.+...+.++.+.++....+...+..+.+.+|||+|++++...+..+++.+|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999999999999988877777788888999999999999999999999999999999999
Q ss_pred CCChhhhhhHHHHHHHHhhh-cC-CCCEEEEEeCCCCCcccc----CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 95 VTARLTYKNVPTWHRDLCRV-CE-NIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~-~~-~~p~liv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
++++.+++.+..|+..+.+. .+ ..|+++|+||.|+..... ..+...++++.+.+++++||++|.|++++|+.++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999887654 23 567999999999965322 2234567777889999999999999999999999
Q ss_pred HHHhcCC
Q 030504 169 RKLAGST 175 (176)
Q Consensus 169 ~~i~~~~ 175 (176)
+.+.+-|
T Consensus 162 ~~~~~~~ 168 (170)
T cd04108 162 ALTFELG 168 (170)
T ss_pred HHHHHcc
Confidence 9887643
No 39
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=2.1e-36 Score=197.65 Aligned_cols=159 Identities=30% Similarity=0.552 Sum_probs=137.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
++||+++|.+|||||||++++..+.+...+.++.+..+ .......+..+.+.+|||+|++.+..++..+++++|++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 47999999999999999999999988888888887544 34566677788999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCcccc-C-HHHHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQV-K-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~-~-~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
||++++.+++.+..|+..+... .++.|+++|+||+|+..... . .+...+++..+++++++||++|.|++++|.|++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 9999999999999988888654 26899999999999976433 2 234567788889999999999999999999999
Q ss_pred HHHh
Q 030504 169 RKLA 172 (176)
Q Consensus 169 ~~i~ 172 (176)
+.+.
T Consensus 160 ~~l~ 163 (164)
T cd04175 160 RQIN 163 (164)
T ss_pred HHhh
Confidence 8775
No 40
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=2.2e-36 Score=201.64 Aligned_cols=162 Identities=27% Similarity=0.525 Sum_probs=139.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
.+.+||+++|.+|+|||||++++..+.+...+.++.+.++ .....+++..+.+.+|||+|++.+..++..+++.+++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii 81 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL 81 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence 4579999999999999999999999998888888887555 445667788889999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccc--cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 166 (176)
+|||++++.+++.+..|+..+.+.. ++.|+++|+||+|+.... ...+...+++..+++++++||++|.|++++|.+
T Consensus 82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~ 161 (189)
T PTZ00369 82 CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE 161 (189)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence 9999999999999999988886653 488999999999996533 223455777778899999999999999999999
Q ss_pred HHHHHhc
Q 030504 167 LARKLAG 173 (176)
Q Consensus 167 l~~~i~~ 173 (176)
+++.+.+
T Consensus 162 l~~~l~~ 168 (189)
T PTZ00369 162 LVREIRK 168 (189)
T ss_pred HHHHHHH
Confidence 9987754
No 41
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=3e-36 Score=200.96 Aligned_cols=159 Identities=31% Similarity=0.500 Sum_probs=135.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
.||+++|.+|||||||+++|..+.+...+.++.+..+. .....++..+.+.+|||+|++.+..++..++..++++++||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 38999999999999999999999998888888875543 34556777889999999999999999999999999999999
Q ss_pred eCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCcccc--------------CHHHHHHHHHcC-CeEEEeccCCC
Q 030504 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQV--------------KAKQVTFHRKKN-LQYYEISAKSN 157 (176)
Q Consensus 94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~~--------------~~~~~~~~~~~~-~~~~~~S~~~~ 157 (176)
|++++.+|+.+. .|+..+....++.|+++|+||+|+..... ..+...+++..+ +.|++|||++|
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~ 159 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN 159 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence 999999999886 58888877667899999999999975321 123446666666 78999999999
Q ss_pred CChHHHHHHHHHHHhc
Q 030504 158 YNFEKPFLYLARKLAG 173 (176)
Q Consensus 158 ~~v~~~~~~l~~~i~~ 173 (176)
.|++++|.++++.+..
T Consensus 160 ~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 160 RGVNEAFTEAARVALN 175 (189)
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999998764
No 42
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=3.3e-36 Score=196.51 Aligned_cols=158 Identities=31% Similarity=0.582 Sum_probs=135.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
.+||+++|.+|||||||++++..+.+...+.++.+ +.....+..++..+.+.+|||+|++++...+..++++++++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence 37999999999999999999999998887788776 33344566777888999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
||++++.+++.+..|+..+.... ++.|+++|+||+|+.... . ..+...+++..+++++++||++|.|++++|.+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04136 80 YSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999988886643 579999999999996532 2 2334567777789999999999999999999999
Q ss_pred HHH
Q 030504 169 RKL 171 (176)
Q Consensus 169 ~~i 171 (176)
+.+
T Consensus 160 ~~~ 162 (163)
T cd04136 160 RQI 162 (163)
T ss_pred Hhc
Confidence 865
No 43
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=4.9e-36 Score=195.52 Aligned_cols=157 Identities=32% Similarity=0.677 Sum_probs=139.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEec--CcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN--CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
+||+++|.+++|||||++++..+.+...+.++.+.++........ +..+.+.+|||||++.+...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999999988888999888776666666 778899999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc-C-HHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-K-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~-~-~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
|||++++.+++.+..|+..+....++.|+++|+||.|+..... . .+...+++..+++++++|++++.|++++|++|+.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 9999999999999999998877778999999999999975332 2 3456788888999999999999999999999986
Q ss_pred H
Q 030504 170 K 170 (176)
Q Consensus 170 ~ 170 (176)
.
T Consensus 161 ~ 161 (162)
T cd04106 161 K 161 (162)
T ss_pred h
Confidence 5
No 44
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=7.8e-36 Score=198.96 Aligned_cols=161 Identities=32% Similarity=0.599 Sum_probs=142.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|.+|||||||+++|..+.+...+.++.+.++....+..++..+.+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999998778899988887777777778899999999999999999999999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
|++++.+++.+..|+..+.... .+.|+++++||+|+.... . ......+++..+++++++||+++.|++++|.++++.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999998887654 468999999999997533 2 234557777788999999999999999999999998
Q ss_pred HhcC
Q 030504 171 LAGS 174 (176)
Q Consensus 171 i~~~ 174 (176)
+..+
T Consensus 161 ~~~~ 164 (188)
T cd04125 161 IIKR 164 (188)
T ss_pred HHHH
Confidence 8754
No 45
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=9.4e-36 Score=202.20 Aligned_cols=160 Identities=30% Similarity=0.519 Sum_probs=140.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecC-cEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
+||+++|.+|||||||+++|..+.+...+.++.+.+.....+..++ ..+.+.+|||+|++.+...+..+++.+|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999888999999888777777754 578999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhc----CCCCEEEEEeCCCCCc-cccC-HHHHHHHHHcCCeEEEeccCCCCChHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~----~~~p~liv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 166 (176)
||++++.+++.+..|+..+.+.. .+.|+++|+||+|+.. +... .+...+++.++++++++||++|+|++++|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 99999999999999999887654 3468999999999974 3332 3456788888999999999999999999999
Q ss_pred HHHHHhc
Q 030504 167 LARKLAG 173 (176)
Q Consensus 167 l~~~i~~ 173 (176)
+++.+..
T Consensus 161 l~~~l~~ 167 (215)
T cd04109 161 LAAELLG 167 (215)
T ss_pred HHHHHHh
Confidence 9998864
No 46
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.2e-35 Score=198.44 Aligned_cols=161 Identities=28% Similarity=0.580 Sum_probs=140.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCC-ccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
+||+++|.+|||||||++++..+.+.. .+.++.+.++......+++..+.+.+|||||++++...+..+++.+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999988853 5677887777776677788889999999999999988889999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCcc-cc-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
||++++.+++.+..|+..+.+.. .+.|+++|+||.|+... .. ..+...+++..+++++++||++|.|++++|.+|++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~ 160 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999998888765 47899999999999642 22 34456777888999999999999999999999999
Q ss_pred HHhcC
Q 030504 170 KLAGS 174 (176)
Q Consensus 170 ~i~~~ 174 (176)
.+.++
T Consensus 161 ~~~~~ 165 (191)
T cd04112 161 ELKHR 165 (191)
T ss_pred HHHHh
Confidence 88765
No 47
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.2e-35 Score=200.88 Aligned_cols=162 Identities=27% Similarity=0.559 Sum_probs=141.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEe-cCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
.+||+++|.+|||||||++++..+.+...+.++.+.++....+.. ++..+.+.+|||+|++.+...+..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 489999999999999999999999998888889888877776666 4667899999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
|||++++.+++.+..|+..+.... ...|+++|+||+|+.... . ..+...+++..+++++++||++|.|++++|++|
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l 161 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL 161 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence 999999999999999999887654 357789999999997532 2 345567888889999999999999999999999
Q ss_pred HHHHhcC
Q 030504 168 ARKLAGS 174 (176)
Q Consensus 168 ~~~i~~~ 174 (176)
++.+.++
T Consensus 162 ~~~~~~~ 168 (211)
T cd04111 162 TQEIYER 168 (211)
T ss_pred HHHHHHH
Confidence 9987653
No 48
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=1.4e-35 Score=193.22 Aligned_cols=158 Identities=32% Similarity=0.614 Sum_probs=140.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|+++||||||+++++.+.+...+.++.+.++.......++..+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888888888888877778888899999999999999999999999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc--cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
|++++.+++.+..|+..+.... ++.|+++++||.|+.... ...+...+++..++.++++||+++.|++++|+++++.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 9999999999999988876553 689999999999997533 2345567888889999999999999999999999986
Q ss_pred H
Q 030504 171 L 171 (176)
Q Consensus 171 i 171 (176)
+
T Consensus 161 ~ 161 (161)
T cd04113 161 I 161 (161)
T ss_pred C
Confidence 4
No 49
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=2.1e-35 Score=194.01 Aligned_cols=161 Identities=32% Similarity=0.617 Sum_probs=140.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
...+||+++|.+++|||||++++..+.+.+.+.++.|.+.....+..++..+.+.+||++|++++..++..+++.+|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 35699999999999999999999999998888888888777777778888999999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc-----CCCCEEEEEeCCCCCcccc-CHHHHHHHHHcC-CeEEEeccCCCCChHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQV-KAKQVTFHRKKN-LQYYEISAKSNYNFEKP 163 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~liv~nK~Dl~~~~~-~~~~~~~~~~~~-~~~~~~S~~~~~~v~~~ 163 (176)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+..+.. ..+..++++..+ ++++++||++|.|+.++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 162 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAA 162 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHH
Confidence 9999999999999999988776532 4689999999999975433 345667788887 58999999999999999
Q ss_pred HHHHHHHH
Q 030504 164 FLYLARKL 171 (176)
Q Consensus 164 ~~~l~~~i 171 (176)
|.++++.+
T Consensus 163 ~~~~~~~~ 170 (170)
T cd04116 163 FEEAVRRV 170 (170)
T ss_pred HHHHHhhC
Confidence 99998763
No 50
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=1.8e-35 Score=193.46 Aligned_cols=159 Identities=33% Similarity=0.589 Sum_probs=141.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
.+||+++|.++||||||++++..+.+...+.++.+.++....+..++..+.+.+||+||++++...+..+++.++++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 47999999999999999999999988888888998888888888888888999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhcC-CCCEEEEEeCCCCCccc--cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~-~~p~liv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
||++++.+++.+..|+..+.+..+ +.|+++|+||+|+.... ...+...+++..++.++++||++|.|++++|+++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 162 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLT 162 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 999999999999999998877654 58999999999997532 233456777778899999999999999999999998
Q ss_pred HH
Q 030504 170 KL 171 (176)
Q Consensus 170 ~i 171 (176)
.+
T Consensus 163 ~i 164 (165)
T cd01868 163 EI 164 (165)
T ss_pred Hh
Confidence 76
No 51
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=2.4e-35 Score=193.38 Aligned_cols=161 Identities=31% Similarity=0.557 Sum_probs=143.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
.+||+++|.+|||||||++++..+.+...+.++.|.+.....+...+..+.+.+||++|++++......+++++|++++|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 48999999999999999999999998888888888888877777888888999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc--cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
||++++.+++.+..|+..+.... ++.|+++|+||.|+.... ...+...++...++.++++||+++.|++++|.++++
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~ 163 (168)
T cd01866 84 YDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAK 163 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999887653 689999999999997432 233455778888999999999999999999999999
Q ss_pred HHhc
Q 030504 170 KLAG 173 (176)
Q Consensus 170 ~i~~ 173 (176)
.+.+
T Consensus 164 ~~~~ 167 (168)
T cd01866 164 EIYE 167 (168)
T ss_pred HHHh
Confidence 8865
No 52
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=1.5e-35 Score=197.51 Aligned_cols=160 Identities=30% Similarity=0.454 Sum_probs=136.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEec-CcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
+||+++|.+|+|||||++++..+.+...+.++.+..+... .... +..+.+.+|||+|++.+...+..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 5899999999999999999999999888888887665443 3343 6788999999999999999999999999999999
Q ss_pred EeCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCccc------cCHHHHHHHHHcCC-eEEEeccCCCCChHHHH
Q 030504 93 FDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ------VKAKQVTFHRKKNL-QYYEISAKSNYNFEKPF 164 (176)
Q Consensus 93 ~d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~------~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~ 164 (176)
||++++.+++.+. .|+..+....++.|+++|+||+|+.... ...+...++...++ +++++||++|.|++++|
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f 159 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVF 159 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHH
Confidence 9999999999986 5887776666789999999999986532 23345677888888 99999999999999999
Q ss_pred HHHHHHHhcC
Q 030504 165 LYLARKLAGS 174 (176)
Q Consensus 165 ~~l~~~i~~~ 174 (176)
.++++.+...
T Consensus 160 ~~l~~~~~~~ 169 (187)
T cd04132 160 DTAIEEALKK 169 (187)
T ss_pred HHHHHHHHhh
Confidence 9999988764
No 53
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=1.7e-35 Score=193.20 Aligned_cols=158 Identities=29% Similarity=0.538 Sum_probs=135.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
++||+++|.+|+|||||++++..+.+...+.++.+ +........++..+.+.+|||+|++++..++..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 47999999999999999999999999888777765 44455666777788999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCcccc-C-HHHHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQV-K-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~~-~-~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
||++++.+++.+..|+..+.... .+.|+++|+||+|+..+.. . .+...+++..+++++++||+++.|++++|.+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999988887653 5899999999999965332 2 234566677788999999999999999999998
Q ss_pred HHH
Q 030504 169 RKL 171 (176)
Q Consensus 169 ~~i 171 (176)
+.+
T Consensus 160 ~~l 162 (163)
T cd04176 160 RQM 162 (163)
T ss_pred Hhc
Confidence 765
No 54
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=3.3e-35 Score=196.78 Aligned_cols=161 Identities=27% Similarity=0.473 Sum_probs=140.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCC-ccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
+||+++|.+|+|||||+++|..+++.. .+.++.+.++....+..++..+.+.+||++|++++...+..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999999874 6788888877777778888889999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc-----c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-----V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~-----~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 166 (176)
||++++.+++.+..|+..+....++.|+++|+||+|+.... . ..+...++...+++++++||+++.|++++|++
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 160 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQK 160 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999998887766689999999999986421 1 12345667778899999999999999999999
Q ss_pred HHHHHhcC
Q 030504 167 LARKLAGS 174 (176)
Q Consensus 167 l~~~i~~~ 174 (176)
+++.+.++
T Consensus 161 i~~~~~~~ 168 (193)
T cd04118 161 VAEDFVSR 168 (193)
T ss_pred HHHHHHHh
Confidence 99988654
No 55
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=2.4e-35 Score=192.17 Aligned_cols=158 Identities=30% Similarity=0.561 Sum_probs=136.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
.+||+++|.+|||||||++++..+.+...+.++.+..+ ......++..+.+.+|||+|++.+..++..+++.++++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 37999999999999999999999988888888876443 44456677778899999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccccC-HHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
||++++.+++.+..|+..+.+.. .+.|+++|+||+|+..+... .+...+++..+++++++||++|.|++++|+++++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVR 159 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999988888887653 58899999999999764433 3455777788999999999999999999999997
Q ss_pred HH
Q 030504 170 KL 171 (176)
Q Consensus 170 ~i 171 (176)
.+
T Consensus 160 ~~ 161 (162)
T cd04138 160 EI 161 (162)
T ss_pred Hh
Confidence 65
No 56
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=1.1e-35 Score=198.49 Aligned_cols=159 Identities=31% Similarity=0.525 Sum_probs=135.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 94 (176)
||+++|.+|||||||+++|..+.+...+.++.+..+ ......++..+.+.+|||+|++++...+..+++.+|++++|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 689999999999999999999998888888877444 3345567778899999999999999999999999999999999
Q ss_pred CCChhhhhhHHHHHHHHhhhc----CCCCEEEEEeCCCCCcccc--CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 95 VTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~----~~~p~liv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
++++.+++.+..|+..+.... ++.|+++|+||+|+..... ..+..+++...++.++++||++|.|++++|.+++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999999999988876542 4789999999999964322 2345577788889999999999999999999999
Q ss_pred HHHhcC
Q 030504 169 RKLAGS 174 (176)
Q Consensus 169 ~~i~~~ 174 (176)
+.+.++
T Consensus 160 ~~l~~~ 165 (190)
T cd04144 160 RALRQQ 165 (190)
T ss_pred HHHHHh
Confidence 987643
No 57
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3.2e-35 Score=192.23 Aligned_cols=159 Identities=33% Similarity=0.618 Sum_probs=138.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
.+||+++|++|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv 82 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIA 82 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 58999999999999999999999998888888888777777777777778999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCC-eEEEeccCCCCChHHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~~~l~ 168 (176)
||++++.+++.+..|+..+.... .+.|+++|+||+|+.... . ..+..++++..+. .++++||++|.|++++|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~ 162 (165)
T cd01864 83 YDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMA 162 (165)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999887653 578999999999997543 2 2345677777775 789999999999999999998
Q ss_pred HHH
Q 030504 169 RKL 171 (176)
Q Consensus 169 ~~i 171 (176)
+.+
T Consensus 163 ~~l 165 (165)
T cd01864 163 TEL 165 (165)
T ss_pred HhC
Confidence 753
No 58
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=2.9e-35 Score=196.36 Aligned_cols=156 Identities=21% Similarity=0.386 Sum_probs=126.1
Q ss_pred eeEEEEEcCCCCcHHHHHH-HHhcC-----CCCCccccceeE-EEeEEE--------EEecCcEEEEEEEeCCCcccccc
Q 030504 13 SFKLVIVGDGGTGKTTFVK-RHLTG-----EFEKKYEPTIGV-EVHPLD--------FFTNCGKIRFYCWDTAGQEKFGG 77 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~-~~~~~-----~~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~D~~g~~~~~~ 77 (176)
.+||+++|..+||||||+. ++..+ .+...+.||.+. +..... ..+++..+.+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 5899999999999999996 54443 345667788763 322211 24577889999999999975 3
Q ss_pred ccccccccccEEEEEEeCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCc--------------------cc-cC
Q 030504 78 LRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN--------------------RQ-VK 135 (176)
Q Consensus 78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~--------------------~~-~~ 135 (176)
....+++++|++++|||++++.+|+.+. .|+..+....++.|+++|+||+||.. +. ..
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~ 159 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP 159 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence 4566889999999999999999999997 58888877667899999999999863 12 23
Q ss_pred HHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHH
Q 030504 136 AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 136 ~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
.+...++++.+++|+||||++|.||+++|+.++++
T Consensus 160 ~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 160 ETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 45678999999999999999999999999999875
No 59
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=3.2e-35 Score=192.21 Aligned_cols=155 Identities=28% Similarity=0.453 Sum_probs=132.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|.+|||||||+++++.+.+...+.++.+.++ ......+...+.+.+|||+|++++..++..+++.++++++||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999998887788776444 334455667889999999999999988888999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhc----CCCCEEEEEeCCCCCc-ccc-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~----~~~p~liv~nK~Dl~~-~~~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
|++++.+++.+..|+..+.+.. ++.|+++|+||+|+.. +.. ..+...++...++.+++|||++|.|++++|+||
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 9999999999998887776542 5789999999999975 333 334556777788999999999999999999999
Q ss_pred HH
Q 030504 168 AR 169 (176)
Q Consensus 168 ~~ 169 (176)
+.
T Consensus 161 ~~ 162 (165)
T cd04140 161 LN 162 (165)
T ss_pred Hh
Confidence 75
No 60
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-36 Score=184.22 Aligned_cols=159 Identities=34% Similarity=0.607 Sum_probs=144.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
-+||+++|..|+|||+|+++|..|-|++....|+|+++..+++.+.+..+++++|||+|+|+++++...||+.++++|+|
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv 86 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhcC-CCCEEEEEeCCCCCccccCH--HHHHHHHHcCCeEEEeccCCCCChHHHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQVKA--KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~-~~p~liv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
||++...+|+-+..|+..+.+... ..-.++|+||.|+.++.... ...++.+.....|+++||+..+|++.+|..++-
T Consensus 87 ydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a~ 166 (213)
T KOG0095|consen 87 YDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLAC 166 (213)
T ss_pred EecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHHH
Confidence 999999999999999999988754 45569999999998754333 345888888888999999999999999998876
Q ss_pred HH
Q 030504 170 KL 171 (176)
Q Consensus 170 ~i 171 (176)
.+
T Consensus 167 rl 168 (213)
T KOG0095|consen 167 RL 168 (213)
T ss_pred HH
Confidence 54
No 61
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=3.8e-35 Score=199.13 Aligned_cols=162 Identities=32% Similarity=0.548 Sum_probs=144.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
..+||+++|++|||||||+++|..+.+...+.++.|.++....+..++..+.+.+||++|++++...+..+++.++++++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il 90 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence 46899999999999999999999999888888999999888888888888999999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
|||++++.+++.+..|+..+.... .+.|+++|+||+|+.... . ..+...++...+++++++||++|.|++++|++++
T Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~ 170 (216)
T PLN03110 91 VYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTIL 170 (216)
T ss_pred EEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999999999998887664 479999999999986533 2 3345677788899999999999999999999999
Q ss_pred HHHhc
Q 030504 169 RKLAG 173 (176)
Q Consensus 169 ~~i~~ 173 (176)
+.+.+
T Consensus 171 ~~i~~ 175 (216)
T PLN03110 171 LEIYH 175 (216)
T ss_pred HHHHH
Confidence 88754
No 62
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=4.2e-35 Score=198.22 Aligned_cols=155 Identities=29% Similarity=0.477 Sum_probs=129.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|.++||||||+++|+.+.+.. +.++.+.++..... ..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999999875 57777765544333 5678999999999999999999999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhh-cCCCCEEEEEeCCCCCc--------------------ccc-CHHHHHHHHHcC-----
Q 030504 94 DVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKN--------------------RQV-KAKQVTFHRKKN----- 146 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~-~~~~p~liv~nK~Dl~~--------------------~~~-~~~~~~~~~~~~----- 146 (176)
|++++.+|+.+..|+..+.+. .++.|+++|+||+|+.. +.+ .++...++++.+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999998877776654 35789999999999864 111 234567777765
Q ss_pred ---------CeEEEeccCCCCChHHHHHHHHHHHhc
Q 030504 147 ---------LQYYEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 147 ---------~~~~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
++|+||||++|.||+++|.++++.+.+
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~ 191 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP 191 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999999988764
No 63
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=6.7e-35 Score=191.57 Aligned_cols=159 Identities=31% Similarity=0.594 Sum_probs=140.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccc-cccccccccccEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-GLRDGYYIHGQCAII 91 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-~~~~~~~~~~~~~i~ 91 (176)
.+||+++|++|+|||||+++++.+.+...+.++.+.++....+..++..+.+.+||++|++.+. .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5899999999999999999999999988888898888887778888888999999999999886 578888999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCC---CCChHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKS---NYNFEKPF 164 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~---~~~v~~~~ 164 (176)
|||++++.+++.+..|+..+.... .+.|+++|+||+|+.... . ..+...+++..+++++++||++ +.+++++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f 161 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence 999999999999999998887653 579999999999997533 2 3345577888889999999999 89999999
Q ss_pred HHHHHHH
Q 030504 165 LYLARKL 171 (176)
Q Consensus 165 ~~l~~~i 171 (176)
.++++.+
T Consensus 162 ~~l~~~~ 168 (170)
T cd04115 162 MTLAHKL 168 (170)
T ss_pred HHHHHHh
Confidence 9999876
No 64
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=1.4e-34 Score=196.56 Aligned_cols=168 Identities=80% Similarity=1.377 Sum_probs=150.7
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
.+...+||+++|++|||||||+++++.+.+...+.++.+.++....+..+...+.+.+||++|++.+...+..++.++++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~ 84 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC 84 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence 44567999999999999999999999999988899999998888877778889999999999999998889999999999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
+++|||+++..++..+..|+..+....++.|+++++||+|+.++....+...+++..++.++++|+++|.|++++|.+++
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ia 164 (215)
T PTZ00132 85 AIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQYYDISAKSNYNFEKPFLWLA 164 (215)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999999999888777778999999999999765555555677788889999999999999999999999
Q ss_pred HHHhcCCC
Q 030504 169 RKLAGSTD 176 (176)
Q Consensus 169 ~~i~~~~~ 176 (176)
+.+.++|+
T Consensus 165 ~~l~~~p~ 172 (215)
T PTZ00132 165 RRLTNDPN 172 (215)
T ss_pred HHHhhccc
Confidence 99987763
No 65
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=4.5e-35 Score=198.08 Aligned_cols=162 Identities=31% Similarity=0.547 Sum_probs=143.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
.+||+++|++|+|||||++++..+.+...+.++.+.++....+..++..+.+.+|||+|++.+...+..+++.+|++++|
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv 85 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEE
Confidence 58999999999999999999999988888888988888777778888888999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc--cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
||++++.+++.+..|+..+.... ++.|+++|+||+|+.... ...+...+++..+++++++||+++.|++++|.|+++
T Consensus 86 ~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~~ 165 (210)
T PLN03108 86 YDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA 165 (210)
T ss_pred EECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999989988776543 579999999999997643 234566888888999999999999999999999999
Q ss_pred HHhcC
Q 030504 170 KLAGS 174 (176)
Q Consensus 170 ~i~~~ 174 (176)
.+.++
T Consensus 166 ~~~~~ 170 (210)
T PLN03108 166 KIYKK 170 (210)
T ss_pred HHHHH
Confidence 88654
No 66
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=8.6e-35 Score=191.77 Aligned_cols=157 Identities=29% Similarity=0.482 Sum_probs=134.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEEeC
Q 030504 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDV 95 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 95 (176)
|+++|.+|||||||+++|..+.+...+.++.+..+ ......++..+.+.+|||+|++.+..++..+++.+|++++|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 68999999999999999999999888888776443 34556677888999999999999999999999999999999999
Q ss_pred CChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCccc--------------cCHHHHHHHHHcCC-eEEEeccCCCCC
Q 030504 96 TARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ--------------VKAKQVTFHRKKNL-QYYEISAKSNYN 159 (176)
Q Consensus 96 ~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~--------------~~~~~~~~~~~~~~-~~~~~S~~~~~~ 159 (176)
+++.+++.+. .|+..+....++.|+++|+||+|+.... ...+...+++..+. .+++|||+++.|
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 159 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEG 159 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence 9999999986 5888888777899999999999986521 12334567888886 999999999999
Q ss_pred hHHHHHHHHHHHhc
Q 030504 160 FEKPFLYLARKLAG 173 (176)
Q Consensus 160 v~~~~~~l~~~i~~ 173 (176)
++++|+.+++.+.+
T Consensus 160 v~~lf~~l~~~~~~ 173 (174)
T smart00174 160 VREVFEEAIRAALN 173 (174)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999998765
No 67
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=9.7e-35 Score=189.72 Aligned_cols=161 Identities=33% Similarity=0.681 Sum_probs=142.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999988888778888888877777777777889999999999999999999999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCcc-c-cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-Q-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~-~-~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
|++++.+++.+..|+..+.... ++.|+++++||+|+... . .......+++..+++++++|++++.|++++|+++++.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999998887664 68999999999998763 2 2344567788889999999999999999999999998
Q ss_pred HhcC
Q 030504 171 LAGS 174 (176)
Q Consensus 171 i~~~ 174 (176)
+.++
T Consensus 161 ~~~~ 164 (164)
T smart00175 161 ILKR 164 (164)
T ss_pred HhhC
Confidence 8754
No 68
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=9.4e-35 Score=189.81 Aligned_cols=159 Identities=32% Similarity=0.569 Sum_probs=135.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
+.+||+++|.+|+|||||+++++.+.+...+.++.+... ......++..+.+.+|||||++++..++..+++.+|++++
T Consensus 1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~il 79 (164)
T cd04145 1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLL 79 (164)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEE
Confidence 358999999999999999999999888777777776333 3345567778899999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCcccc--CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
|||++++.+++.+..|+..+.... .+.|+++++||+|+..+.. ..+...+++..+++++++||++|.|++++|+++
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 159 (164)
T cd04145 80 VFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDL 159 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHH
Confidence 999999999999999988876642 5789999999999976432 234557777888999999999999999999999
Q ss_pred HHHH
Q 030504 168 ARKL 171 (176)
Q Consensus 168 ~~~i 171 (176)
++.+
T Consensus 160 ~~~~ 163 (164)
T cd04145 160 VRVI 163 (164)
T ss_pred HHhh
Confidence 8865
No 69
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=7.4e-35 Score=190.34 Aligned_cols=159 Identities=30% Similarity=0.565 Sum_probs=135.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|++|||||||++++..+.+...+.++.+ +........++..+.+.+|||||++++...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999999888877777765 333445566777889999999999999999999999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccc-cC-HHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~-~~-~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
|++++.+++.+..|+..+.+.. .+.|+++|+||+|+.... .. .+...+++..+.+++++||+++.|++++|+++++
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 9999999999999888876553 478999999999997533 22 3455777888899999999999999999999998
Q ss_pred HHhc
Q 030504 170 KLAG 173 (176)
Q Consensus 170 ~i~~ 173 (176)
.+..
T Consensus 160 ~~~~ 163 (164)
T smart00173 160 EIRK 163 (164)
T ss_pred HHhh
Confidence 8753
No 70
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=1.8e-34 Score=188.28 Aligned_cols=159 Identities=33% Similarity=0.604 Sum_probs=140.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
++||+++|++++|||||+++++.+.+...+.++.+.++....+..++..+.+.+||+||++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 48999999999999999999999998877788888778777888888899999999999999998899999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCcc-c-cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-Q-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~-~-~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
+|++++.+++.+..|+..+.... ++.|+++++||.|+... . ...+...+++..++.++++||++|.|++++|+++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK 160 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998887665 67899999999998742 2 333456778888899999999999999999999998
Q ss_pred HH
Q 030504 170 KL 171 (176)
Q Consensus 170 ~i 171 (176)
.+
T Consensus 161 ~l 162 (163)
T cd01860 161 KL 162 (163)
T ss_pred Hh
Confidence 76
No 71
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=1.8e-34 Score=188.49 Aligned_cols=158 Identities=27% Similarity=0.542 Sum_probs=135.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC--CCCCccccceeEEEeEEEEEec-CcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTG--EFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
+||+++|.+|||||||++++..+ .+...+.++.|.++.......+ +..+.+.+|||+|++.+..++..+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999998764 6778888999888776666654 56799999999999999888999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc-cCH-HHHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~-~~~-~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
+|||++++.+++.+..|+..+....++.|+++|+||+|+.... ... +...+....+++++++||+++.|++++|++++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLA 160 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHH
Confidence 9999999999999999998887766679999999999996543 222 33456667788999999999999999999999
Q ss_pred HHH
Q 030504 169 RKL 171 (176)
Q Consensus 169 ~~i 171 (176)
+.+
T Consensus 161 ~~~ 163 (164)
T cd04101 161 RAF 163 (164)
T ss_pred HHh
Confidence 875
No 72
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=2.5e-34 Score=192.42 Aligned_cols=162 Identities=20% Similarity=0.295 Sum_probs=131.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccc--------ccccccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYYIH 85 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~~~ 85 (176)
+||+++|.+|||||||+++|..+.+...+.|+.+.+.....+..++..+.+.+|||||.+.+... ....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 58999999999999999999999998888888876665555667778899999999997654321 2234688
Q ss_pred ccEEEEEEeCCChhhhhhHHHHHHHHhhh----cCCCCEEEEEeCCCCCccc-cCHH-HHHHH-HHcCCeEEEeccCCCC
Q 030504 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRV----CENIPIVLCGNKVDVKNRQ-VKAK-QVTFH-RKKNLQYYEISAKSNY 158 (176)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~p~liv~nK~Dl~~~~-~~~~-~~~~~-~~~~~~~~~~S~~~~~ 158 (176)
+|++++|||++++.+++.+..|+..+... .++.|+++|+||+|+.... ...+ ...++ +..+++|++|||++|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 99999999999999999999998887664 2579999999999996533 2222 33443 3568999999999999
Q ss_pred ChHHHHHHHHHHHhcCC
Q 030504 159 NFEKPFLYLARKLAGST 175 (176)
Q Consensus 159 ~v~~~~~~l~~~i~~~~ 175 (176)
|++++|+.+++.+..+.
T Consensus 161 ~v~~lf~~i~~~~~~~~ 177 (198)
T cd04142 161 HILLLFKELLISATTRG 177 (198)
T ss_pred CHHHHHHHHHHHhhccC
Confidence 99999999999877653
No 73
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=2.5e-34 Score=189.16 Aligned_cols=161 Identities=30% Similarity=0.622 Sum_probs=138.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|++|||||||++++..+.+...+.++.+.++........+..+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888888887777777777888889999999999999999999999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhcC-----CCCEEEEEeCCCCCc-cc-cCHHHHHHHHHcC-CeEEEeccCCCCChHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVDVKN-RQ-VKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFL 165 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~-----~~p~liv~nK~Dl~~-~~-~~~~~~~~~~~~~-~~~~~~S~~~~~~v~~~~~ 165 (176)
|++++.+++....|...+..... +.|+++|+||+|+.. .. ...+...+.+..+ .+++++|+++|.|++++|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence 99999999988888877655432 789999999999974 22 2344456666666 7999999999999999999
Q ss_pred HHHHHHhcC
Q 030504 166 YLARKLAGS 174 (176)
Q Consensus 166 ~l~~~i~~~ 174 (176)
++++.+.+.
T Consensus 161 ~i~~~~~~~ 169 (172)
T cd01862 161 TIARKALEQ 169 (172)
T ss_pred HHHHHHHhc
Confidence 999988765
No 74
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=9.3e-36 Score=184.70 Aligned_cols=161 Identities=25% Similarity=0.538 Sum_probs=143.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEe-cCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
.++++++|.+-+|||+|++.|..|++.+-.+||.|+++....+.. ++..+++++|||+|+|+++++.+.||+++-++++
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvll 87 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLL 87 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEE
Confidence 589999999999999999999999999989999999888776655 5778999999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhc--CCCC-EEEEEeCCCCCccc--cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIP-IVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p-~liv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 166 (176)
|||++++.+|+.+..|........ |.++ +++|++|+||.... ..++..+++..+|..|+|+|+++|.||+|.|..
T Consensus 88 vyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~m 167 (213)
T KOG0091|consen 88 VYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDM 167 (213)
T ss_pred EEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHHH
Confidence 999999999999999998776554 4444 68899999998633 345677999999999999999999999999999
Q ss_pred HHHHHhc
Q 030504 167 LARKLAG 173 (176)
Q Consensus 167 l~~~i~~ 173 (176)
+++.+..
T Consensus 168 laqeIf~ 174 (213)
T KOG0091|consen 168 LAQEIFQ 174 (213)
T ss_pred HHHHHHH
Confidence 9998764
No 75
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=7.8e-36 Score=184.22 Aligned_cols=165 Identities=27% Similarity=0.468 Sum_probs=149.5
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
-+.-.+|++++|+.=+|||+|+.||..++|...+..|....+....+.+++....+.+|||+|+|+|..+-+.||+++++
T Consensus 9 g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnG 88 (218)
T KOG0088|consen 9 GKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNG 88 (218)
T ss_pred CCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCc
Confidence 34457999999999999999999999999999888888888888888888899999999999999999999999999999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc--cCHHHHHHHHHcCCeEEEeccCCCCChHHHHH
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 165 (176)
+++|||++|+.+|+.+..|...+.... ...-+++|+||.||+.+. ..+++..+++.-|..|+++||+++.|+.++|+
T Consensus 89 alLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe 168 (218)
T KOG0088|consen 89 ALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFE 168 (218)
T ss_pred eEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHH
Confidence 999999999999999999999998876 467789999999998643 34567789999999999999999999999999
Q ss_pred HHHHHHhc
Q 030504 166 YLARKLAG 173 (176)
Q Consensus 166 ~l~~~i~~ 173 (176)
.|.+...|
T Consensus 169 ~Lt~~MiE 176 (218)
T KOG0088|consen 169 SLTAKMIE 176 (218)
T ss_pred HHHHHHHH
Confidence 99887654
No 76
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=2.5e-34 Score=187.25 Aligned_cols=158 Identities=32% Similarity=0.575 Sum_probs=138.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|+++||||||+++++.+.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999888888888888888887877777889999999999999999999999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCc-cccC-HHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
|++++.+++.+..|+..+.... .+.|+++++||.|+.. .... .+...+++..++.++++|++++.|++++|+++++.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 9999999999999998886654 3699999999999953 3333 34557777788999999999999999999999875
Q ss_pred H
Q 030504 171 L 171 (176)
Q Consensus 171 i 171 (176)
+
T Consensus 161 l 161 (161)
T cd01861 161 L 161 (161)
T ss_pred C
Confidence 3
No 77
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=100.00 E-value=4.5e-34 Score=188.16 Aligned_cols=156 Identities=25% Similarity=0.432 Sum_probs=132.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|.+|+|||||++++..+.+...+.++.. +........++..+.+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAF-DNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 5899999999999999999999999888888763 444456667777889999999999999999999999999999999
Q ss_pred eCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCccc--------------cCHHHHHHHHHcCC-eEEEeccCCC
Q 030504 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ--------------VKAKQVTFHRKKNL-QYYEISAKSN 157 (176)
Q Consensus 94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~--------------~~~~~~~~~~~~~~-~~~~~S~~~~ 157 (176)
|++++.+|+.+. .|+..+....++.|+++++||+|+.... ...+...+++..+. .++++||++|
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~ 159 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQ 159 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 999999999885 6887777655689999999999986421 22345677888887 8999999999
Q ss_pred CChHHHHHHHHHH
Q 030504 158 YNFEKPFLYLARK 170 (176)
Q Consensus 158 ~~v~~~~~~l~~~ 170 (176)
.|++++|+.++.+
T Consensus 160 ~~v~~lf~~~~~~ 172 (173)
T cd04130 160 KNLKEVFDTAILA 172 (173)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999988753
No 78
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=100.00 E-value=4.9e-34 Score=185.94 Aligned_cols=158 Identities=34% Similarity=0.624 Sum_probs=138.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|++|+|||||++++..+.+...+.++.+.++....+......+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 68999999999999999999988887777888888877776777777889999999999999989999999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccc-cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
|++++.+++.+..|+..+.... .+.|+++|+||+|+.... ...+...+++..+++++++|+++|.|++++++++++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 9999999999999988887654 589999999999997433 3445668888889999999999999999999999875
Q ss_pred H
Q 030504 171 L 171 (176)
Q Consensus 171 i 171 (176)
+
T Consensus 161 ~ 161 (161)
T cd01863 161 I 161 (161)
T ss_pred C
Confidence 3
No 79
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=3.5e-34 Score=187.84 Aligned_cols=162 Identities=19% Similarity=0.219 Sum_probs=138.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (176)
.+.+||+++|.+|||||||+++|+.+.+. ..+.||.+.++....+..++..+.+.+||++|++.+...+..++.++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 35789999999999999999999999998 88899988777766677777788999999999999999999999999999
Q ss_pred EEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc--CHHHHHHHHHcCC-eEEEeccCCCCChHHHHHH
Q 030504 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~--~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~~~ 166 (176)
++|||++++.+++.+..|+..+... .+.|+++|+||+|+.+... ..+..++++..++ .++++||+++.|++++|+.
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~-~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~ 160 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML-GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTK 160 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC-CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHH
Confidence 9999999999999988888765332 4799999999999964322 2334566777776 4799999999999999999
Q ss_pred HHHHHhc
Q 030504 167 LARKLAG 173 (176)
Q Consensus 167 l~~~i~~ 173 (176)
+++.+.+
T Consensus 161 l~~~~~~ 167 (169)
T cd01892 161 LATAAQY 167 (169)
T ss_pred HHHHhhC
Confidence 9998764
No 80
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=9e-34 Score=192.10 Aligned_cols=165 Identities=30% Similarity=0.531 Sum_probs=138.9
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEE
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (176)
....+||+++|.+|||||||+++++.+.+ ..+.++.+.++....+..++..+.+.+|||||++++..++..+++.+|++
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 89 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGI 89 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 34579999999999999999999888776 45678888877777777777888999999999999999999999999999
Q ss_pred EEEEeCCChhhhhhHHH-HHHHHhhhc--CCCCEEEEEeCCCCCcccc--CHHHHHHHHHcCCeEEEeccCCCCChHHHH
Q 030504 90 IIMFDVTARLTYKNVPT-WHRDLCRVC--ENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 90 i~v~d~~~~~s~~~~~~-~~~~~~~~~--~~~p~liv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~ 164 (176)
++|||++++.+++.+.. |...+.... .+.|+++|+||+|+..... ..+...++...++.++++||+++.|++++|
T Consensus 90 vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~ 169 (211)
T PLN03118 90 ILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCF 169 (211)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999875 555444332 4679999999999975332 234557777888999999999999999999
Q ss_pred HHHHHHHhcCC
Q 030504 165 LYLARKLAGST 175 (176)
Q Consensus 165 ~~l~~~i~~~~ 175 (176)
++|++.+.+.+
T Consensus 170 ~~l~~~~~~~~ 180 (211)
T PLN03118 170 EELALKIMEVP 180 (211)
T ss_pred HHHHHHHHhhh
Confidence 99999887654
No 81
>PLN00223 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=1.4e-34 Score=191.45 Aligned_cols=159 Identities=22% Similarity=0.295 Sum_probs=126.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
...+||+++|.++||||||++++..+.+. .+.||.|.+.... +...+.+.+||+||++.++.+|..+++++|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~~~----~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETV----EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEEEE----EECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 45689999999999999999999888775 4578887655432 235688999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHHHHH-----cCCeEEEeccCCCCChHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRK-----KNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~~v~~~ 163 (176)
+|||++++.+++.+..++..+... .++.|+++++||.|+.+.....+......- ..+.++++||++|+|++++
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~ 169 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHH
Confidence 999999999998888777766432 368999999999999765433232222211 1235678999999999999
Q ss_pred HHHHHHHHhcC
Q 030504 164 FLYLARKLAGS 174 (176)
Q Consensus 164 ~~~l~~~i~~~ 174 (176)
|+||++.+..+
T Consensus 170 ~~~l~~~~~~~ 180 (181)
T PLN00223 170 LDWLSNNIANK 180 (181)
T ss_pred HHHHHHHHhhc
Confidence 99999988764
No 82
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=3.4e-34 Score=185.68 Aligned_cols=151 Identities=23% Similarity=0.370 Sum_probs=123.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|++|||||||+.+|+.+.+...+.++.+ .+ ...+.+++..+.+.+|||+|++. ..+++.+|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~-~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGG-RF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-ce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 5899999999999999999999988776665533 33 34566777888999999999975 34567899999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCc---cccCH-HHHHHHHHc-CCeEEEeccCCCCChHHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN---RQVKA-KQVTFHRKK-NLQYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~---~~~~~-~~~~~~~~~-~~~~~~~S~~~~~~v~~~~~~ 166 (176)
|++++.+|+.+..|+..+.... ++.|+++|+||.|+.. +.... +...++++. ++.|++|||++|.|++++|.+
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 9999999999999999887654 5789999999999852 22332 345677665 589999999999999999999
Q ss_pred HHHHH
Q 030504 167 LARKL 171 (176)
Q Consensus 167 l~~~i 171 (176)
+++.+
T Consensus 154 ~~~~~ 158 (158)
T cd04103 154 AAQKI 158 (158)
T ss_pred HHhhC
Confidence 98753
No 83
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=100.00 E-value=1.1e-34 Score=189.93 Aligned_cols=154 Identities=20% Similarity=0.296 Sum_probs=123.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
.+.+||+++|.++||||||++++..+.+. .+.||.|.+..... ...+.+.+|||+|+++++..+..+++++|+++
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~~~~----~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii 81 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETVT----YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 81 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceEEEE----ECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 46799999999999999999998877765 35677776654332 25688999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHHH-----HHcCCeEEEeccCCCCChHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v~~~ 163 (176)
+|||++++.+++.+..|+..+... .++.|+++|+||+|+.+.....+...++ ....+.++++||++|.|++++
T Consensus 82 ~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~ 161 (168)
T cd04149 82 FVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEG 161 (168)
T ss_pred EEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHH
Confidence 999999999998888777666542 3578999999999997643333333332 123457899999999999999
Q ss_pred HHHHHH
Q 030504 164 FLYLAR 169 (176)
Q Consensus 164 ~~~l~~ 169 (176)
|+||.+
T Consensus 162 ~~~l~~ 167 (168)
T cd04149 162 LTWLSS 167 (168)
T ss_pred HHHHhc
Confidence 999975
No 84
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=100.00 E-value=1.5e-33 Score=185.88 Aligned_cols=158 Identities=25% Similarity=0.388 Sum_probs=133.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|++|+|||||+++|..+.+...+.++.+. .....+..++..+.+.+|||+|++.+...+..++..+|++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-HYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 58999999999999999999999988777777653 33345667777888999999999999999999999999999999
Q ss_pred eCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCccc-------------c-CHHHHHHHHHcCC-eEEEeccCCC
Q 030504 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKNL-QYYEISAKSN 157 (176)
Q Consensus 94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~-------------~-~~~~~~~~~~~~~-~~~~~S~~~~ 157 (176)
|++++.+++.+. .|+..+....++.|+++|+||.|+.+.. . ..+...+++..++ .+++|||++|
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 159 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQ 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcC
Confidence 999999999886 5777776656789999999999986432 1 2334567777876 7999999999
Q ss_pred CChHHHHHHHHHHHh
Q 030504 158 YNFEKPFLYLARKLA 172 (176)
Q Consensus 158 ~~v~~~~~~l~~~i~ 172 (176)
.|++++|..+++.+.
T Consensus 160 ~gi~~~f~~~~~~~~ 174 (174)
T cd04135 160 KGLKTVFDEAILAIL 174 (174)
T ss_pred CCHHHHHHHHHHHhC
Confidence 999999999998763
No 85
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=100.00 E-value=8.1e-34 Score=195.37 Aligned_cols=158 Identities=29% Similarity=0.506 Sum_probs=132.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|.+|||||||+++|+.+.+...+.+|.+ +.....+.+++..+.+.+|||+|++.+..++..++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999999888888886 555566677888899999999999999888888889999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhh----------cCCCCEEEEEeCCCCCc-cccCH-HHHHHHH-HcCCeEEEeccCCCCCh
Q 030504 94 DVTARLTYKNVPTWHRDLCRV----------CENIPIVLCGNKVDVKN-RQVKA-KQVTFHR-KKNLQYYEISAKSNYNF 160 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~----------~~~~p~liv~nK~Dl~~-~~~~~-~~~~~~~-~~~~~~~~~S~~~~~~v 160 (176)
|++++.+|+.+..|+..+... ..+.|+++|+||+|+.. +.... +..+++. ..++.++++||++|.|+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 999999999999888887643 24789999999999975 33332 3334443 24688999999999999
Q ss_pred HHHHHHHHHHHh
Q 030504 161 EKPFLYLARKLA 172 (176)
Q Consensus 161 ~~~~~~l~~~i~ 172 (176)
+++|.+|+....
T Consensus 160 ~elf~~L~~~~~ 171 (247)
T cd04143 160 DEMFRALFSLAK 171 (247)
T ss_pred HHHHHHHHHHhc
Confidence 999999998653
No 86
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=100.00 E-value=5.6e-34 Score=186.98 Aligned_cols=156 Identities=22% Similarity=0.352 Sum_probs=126.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 94 (176)
||+++|.++||||||++++..+.+.. +.+|.|...... +...+.+.+|||||++.+...+..+++.+|++++|+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~~~----~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVETV----EYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEEEE----EECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999988886654 677777555432 2356789999999999999999999999999999999
Q ss_pred CCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHHHHHc------CCeEEEeccCCCCChHHHHHH
Q 030504 95 VTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKK------NLQYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~S~~~~~~v~~~~~~ 166 (176)
++++.++..+..|+..+... ..+.|+++|+||+|+.+.....+...++... .+.+++|||++|.|++++|+|
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~ 155 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDW 155 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHH
Confidence 99999999998888877643 2468999999999997654444444444322 236889999999999999999
Q ss_pred HHHHHhcCC
Q 030504 167 LARKLAGST 175 (176)
Q Consensus 167 l~~~i~~~~ 175 (176)
|++.+.+.+
T Consensus 156 l~~~~~~~~ 164 (169)
T cd04158 156 LSRQLVAAG 164 (169)
T ss_pred HHHHHhhcc
Confidence 999887764
No 87
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=100.00 E-value=2e-33 Score=184.28 Aligned_cols=159 Identities=26% Similarity=0.521 Sum_probs=135.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
++||+++|.+|||||||++++..+.+...+.++.+.. .......++..+.+.+|||||++.+..+++.+++.++++++|
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv 79 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV 79 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence 4799999999999999999999999888788887643 345556677788999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCcccc--CHHHHHHHHHcC-CeEEEeccCCCCChHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~~--~~~~~~~~~~~~-~~~~~~S~~~~~~v~~~~~~l 167 (176)
||++++.+++.+..|...+.... .+.|+++++||.|+..... ..+...+++..+ ++++++||+++.|+.++|+++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i 159 (168)
T cd04177 80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL 159 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence 99999999999998888876542 5799999999999975332 233456667777 789999999999999999999
Q ss_pred HHHHh
Q 030504 168 ARKLA 172 (176)
Q Consensus 168 ~~~i~ 172 (176)
++.+.
T Consensus 160 ~~~~~ 164 (168)
T cd04177 160 VRQII 164 (168)
T ss_pred HHHHh
Confidence 98764
No 88
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=2.5e-33 Score=182.64 Aligned_cols=158 Identities=32% Similarity=0.583 Sum_probs=135.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|++|+|||||++++..+.+...+.++.+.+.........+..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999998887766667666666666666677789999999999999999999999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
|++++.+++.+..|+..+.... .+.|+++++||+|+.... . ..+..++++..+++++++|++++.|++++|+|+++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999988887664 378999999999997532 2 234456777889999999999999999999999887
Q ss_pred H
Q 030504 171 L 171 (176)
Q Consensus 171 i 171 (176)
+
T Consensus 161 ~ 161 (162)
T cd04123 161 M 161 (162)
T ss_pred h
Confidence 5
No 89
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=100.00 E-value=9.2e-34 Score=186.82 Aligned_cols=157 Identities=24% Similarity=0.339 Sum_probs=125.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
...+||+++|.+|||||||++++..+.+. .+.||.|.+...... ..+.+.+||++|++.+...+..+++++|++|
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~~~~----~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii 85 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVETVTY----KNISFTVWDVGGQDKIRPLWRHYYTNTQGLI 85 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEEEEE----CCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence 45699999999999999999999888875 467788766543332 5678999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHHH-----HHcCCeEEEeccCCCCChHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v~~~ 163 (176)
+|||++++.+++....|+..+... .++.|+++|+||+|+.+.....+..... +...+.++++||++|.|++++
T Consensus 86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 165 (175)
T smart00177 86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEG 165 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHH
Confidence 999999999999888877766432 3578999999999997643322222211 223456789999999999999
Q ss_pred HHHHHHHHh
Q 030504 164 FLYLARKLA 172 (176)
Q Consensus 164 ~~~l~~~i~ 172 (176)
|+||...+.
T Consensus 166 ~~~l~~~~~ 174 (175)
T smart00177 166 LTWLSNNLK 174 (175)
T ss_pred HHHHHHHhc
Confidence 999988753
No 90
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=100.00 E-value=9.7e-34 Score=185.24 Aligned_cols=157 Identities=22% Similarity=0.390 Sum_probs=130.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccc-ccccccccccccEEEEEE
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-GGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-~~~~~~~~~~~~~~i~v~ 93 (176)
||+++|++|+|||||+++++.+.+...+.++.+... ......++..+.+.+||+||++.+ ......+++.+|++++||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 689999999999999999998888777777664333 444566778889999999999853 445677889999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhc---CCCCEEEEEeCCCCCcc-cc-CHHHHHHHHHcCCeEEEeccCCC-CChHHHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSN-YNFEKPFLYL 167 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~---~~~p~liv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~-~~v~~~~~~l 167 (176)
|++++.+++.+..|+..+.... .+.|+++|+||+|+... .. ..+...+++..+++|+++||+++ .|++++|.++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 9999999999999888777653 48999999999998643 22 33456788888999999999999 5999999999
Q ss_pred HHHHh
Q 030504 168 ARKLA 172 (176)
Q Consensus 168 ~~~i~ 172 (176)
++.+.
T Consensus 160 ~~~~~ 164 (165)
T cd04146 160 CREVR 164 (165)
T ss_pred HHHHh
Confidence 98775
No 91
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=100.00 E-value=2.4e-33 Score=190.82 Aligned_cols=158 Identities=20% Similarity=0.320 Sum_probs=131.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccc-cccEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI-HGQCAII 91 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~-~~~~~i~ 91 (176)
+||+++|.+|||||||+++|..+.+. ..+.++.+.+.....+.+++..+.+.+|||+|++ ......++. .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999999888886 6667776656666667777788999999999998 233444556 8999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
|||++++.+++.+..|+..+.... .+.|+++|+||+|+.... . ..+...++...+++++++||+++.|++++|+++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 999999999999999988887653 579999999999996533 2 233457777788999999999999999999999
Q ss_pred HHHHhc
Q 030504 168 ARKLAG 173 (176)
Q Consensus 168 ~~~i~~ 173 (176)
++.+..
T Consensus 159 ~~~~~~ 164 (221)
T cd04148 159 VRQIRL 164 (221)
T ss_pred HHHHHh
Confidence 998863
No 92
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.3e-36 Score=184.21 Aligned_cols=161 Identities=32% Similarity=0.602 Sum_probs=144.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEec---------CcEEEEEEEeCCCccccccccccccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN---------CGKIRFYCWDTAGQEKFGGLRDGYYI 84 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~D~~g~~~~~~~~~~~~~ 84 (176)
+|.+.+|.+|+||||++.++..|+|......|.|+++..+.+-+. ...+.+++|||+|+|+++++.-++++
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfR 89 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFR 89 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999988876442 24588999999999999999999999
Q ss_pred cccEEEEEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCH--HHHHHHHHcCCeEEEeccCCCCCh
Q 030504 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKA--KQVTFHRKKNLQYYEISAKSNYNF 160 (176)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~S~~~~~~v 160 (176)
.+-+++++||+++..||-++..|+.++... +.+..+++++||+||++..... ++.+++.++++||||+||.+|.||
T Consensus 90 DAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv 169 (219)
T KOG0081|consen 90 DAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGTNV 169 (219)
T ss_pred hhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcCH
Confidence 999999999999999999999999988755 4788899999999999865544 356899999999999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 030504 161 EKPFLYLARKLAGS 174 (176)
Q Consensus 161 ~~~~~~l~~~i~~~ 174 (176)
++..+-++..++++
T Consensus 170 ~kave~LldlvM~R 183 (219)
T KOG0081|consen 170 EKAVELLLDLVMKR 183 (219)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998887664
No 93
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=1.1e-33 Score=187.40 Aligned_cols=159 Identities=21% Similarity=0.316 Sum_probs=125.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
...+||+++|+++||||||++++..+.+.. +.||.+.+.... +...+.+.+|||+|+++++..+..+++++|++|
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~~~----~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI 89 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVETV----EYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLI 89 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceEEE----EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 456999999999999999999998888764 567877655432 225678999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHH-----HHHcCCeEEEeccCCCCChHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
+|+|++++.+++....++..+... ..+.|+++|+||.|+.+.....+.... ++...+.++++||++|.|++++
T Consensus 90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~ 169 (182)
T PTZ00133 90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEG 169 (182)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHH
Confidence 999999999998888766665432 357899999999999754332222211 1122346779999999999999
Q ss_pred HHHHHHHHhcC
Q 030504 164 FLYLARKLAGS 174 (176)
Q Consensus 164 ~~~l~~~i~~~ 174 (176)
|+||++.+.++
T Consensus 170 ~~~l~~~i~~~ 180 (182)
T PTZ00133 170 LDWLSANIKKS 180 (182)
T ss_pred HHHHHHHHHHh
Confidence 99999988754
No 94
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=100.00 E-value=7.6e-34 Score=184.54 Aligned_cols=151 Identities=24% Similarity=0.340 Sum_probs=120.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|.++||||||++++..+.+. .+.|+.|....... ...+.+.+||++|++++...+..+++++|++++||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~~~~----~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVE----YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEEE----ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 48999999999999999999888886 46778776553322 25688999999999999999999999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHHH-----HHcCCeEEEeccCCCCChHHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v~~~~~~ 166 (176)
|++++.+++.+..|+..+... ..+.|+++++||+|+.+.....+..... ....+.++++||++|.|++++|+|
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~ 155 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDW 155 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHH
Confidence 999999999888877666432 3578999999999997543322222211 123456889999999999999999
Q ss_pred HHH
Q 030504 167 LAR 169 (176)
Q Consensus 167 l~~ 169 (176)
|.+
T Consensus 156 l~~ 158 (159)
T cd04150 156 LSN 158 (159)
T ss_pred Hhc
Confidence 864
No 95
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=100.00 E-value=6.3e-33 Score=183.03 Aligned_cols=157 Identities=31% Similarity=0.512 Sum_probs=131.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
.||+++|++|||||||+++|..+.+...+.++.+.... ..+..++..+.+.+|||+|++.+...+..++.++|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 58999999999999999999999998888888764443 34566778889999999999999888888899999999999
Q ss_pred eCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCcccc--------------CHHHHHHHHHcC-CeEEEeccCCC
Q 030504 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQV--------------KAKQVTFHRKKN-LQYYEISAKSN 157 (176)
Q Consensus 94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~~--------------~~~~~~~~~~~~-~~~~~~S~~~~ 157 (176)
|++++.+++.+. .|...+.+..++.|+++|+||+|+..... ..+..++++..+ ..+++|||++|
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTK 160 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccC
Confidence 999999998885 57777776667899999999999864321 123445666666 48999999999
Q ss_pred CChHHHHHHHHHHH
Q 030504 158 YNFEKPFLYLARKL 171 (176)
Q Consensus 158 ~~v~~~~~~l~~~i 171 (176)
.|++++|.++++.+
T Consensus 161 ~~v~~lf~~l~~~~ 174 (175)
T cd01870 161 EGVREVFEMATRAA 174 (175)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999998764
No 96
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=100.00 E-value=5.9e-33 Score=180.06 Aligned_cols=156 Identities=36% Similarity=0.712 Sum_probs=138.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|+++||||||++++..+.+...+.++.+.++.......+...+.+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888889888888888888888899999999999999899999999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCC--ccccCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVK--NRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
|++++.+++.+..|+..+.... ++.|+++++||+|+. ......+...++...+++++++|++++.|++++|++|++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~ 159 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLAE 159 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHhC
Confidence 9999999999999998887775 679999999999996 333444556777778999999999999999999999863
No 97
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=100.00 E-value=1e-32 Score=180.14 Aligned_cols=159 Identities=30% Similarity=0.557 Sum_probs=135.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|.+|||||||++++..+.+...+.++.+... ......++..+.+.+||+||++.+...+..+++.++++++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 5899999999999999999999888777777765333 344556778889999999999999999999999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCc-c-ccCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-R-QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~-~-~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
|++++.+++.+..|+..+.... .+.|+++|+||+|+.. . ....+...+....+++++++||+++.|++++|+++++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 9999999999998888887653 5899999999999976 2 2333445777778899999999999999999999998
Q ss_pred HHhc
Q 030504 170 KLAG 173 (176)
Q Consensus 170 ~i~~ 173 (176)
.+.+
T Consensus 160 ~~~~ 163 (164)
T cd04139 160 EIRQ 163 (164)
T ss_pred HHHh
Confidence 8765
No 98
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.5e-34 Score=172.20 Aligned_cols=164 Identities=32% Similarity=0.531 Sum_probs=149.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
-.+|.+++|.-|+|||+|+.+|...+|-..-.+++|+++....+.+.+..+++++|||+|+++++...+.+++++.+.++
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalm 89 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 89 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeE
Confidence 36899999999999999999999999888888999999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhh-cCCCCEEEEEeCCCCCccc--cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~liv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
|||++.+.+++.+..|+...... .|+.-+++++||.||+... ..++...++.+.|+.|+++|+++|+++++.|-..+
T Consensus 90 vyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafle~a 169 (215)
T KOG0097|consen 90 VYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLETA 169 (215)
T ss_pred EEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHHH
Confidence 99999999999999999887665 3788899999999998643 34567799999999999999999999999999999
Q ss_pred HHHhcCC
Q 030504 169 RKLAGST 175 (176)
Q Consensus 169 ~~i~~~~ 175 (176)
++|+++.
T Consensus 170 kkiyqni 176 (215)
T KOG0097|consen 170 KKIYQNI 176 (215)
T ss_pred HHHHHhh
Confidence 9988753
No 99
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=100.00 E-value=1.7e-33 Score=183.70 Aligned_cols=150 Identities=15% Similarity=0.155 Sum_probs=126.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEEeC
Q 030504 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDV 95 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 95 (176)
|+++|++|||||||+++|..+.+...+.|+.|... ...+...+.+.+||++|++.++..+..+++++|++++|||+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 78999999999999999999888888888887643 23345678899999999999999999999999999999999
Q ss_pred CChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHH------HHHHHHHcCCeEEEeccCC------CCChHHH
Q 030504 96 TARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK------QVTFHRKKNLQYYEISAKS------NYNFEKP 163 (176)
Q Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~------~~~~~~~~~~~~~~~S~~~------~~~v~~~ 163 (176)
+++.++.....|+..+....++.|+++|+||+|+.......+ ...++++.++.+++|||++ ++||+++
T Consensus 78 t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~ 157 (164)
T cd04162 78 ADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDL 157 (164)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHH
Confidence 999999988888887765557899999999999976443322 2345566788999999888 9999999
Q ss_pred HHHHHH
Q 030504 164 FLYLAR 169 (176)
Q Consensus 164 ~~~l~~ 169 (176)
|+.++.
T Consensus 158 ~~~~~~ 163 (164)
T cd04162 158 LSQLIN 163 (164)
T ss_pred HHHHhc
Confidence 998863
No 100
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=100.00 E-value=9e-33 Score=183.35 Aligned_cols=161 Identities=21% Similarity=0.277 Sum_probs=128.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEe-cCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
..+||+++|.+|||||||++++..+.+... .|+.|.+........ +...+.+.+|||+|++++...+..+++.+|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 358999999999999999999988877654 577776665555544 346789999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccccCHHHHHHHH------HcCCeEEEeccCCCCChHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFHR------KKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~S~~~~~~v~~ 162 (176)
+|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.......+...+.. ...++++++||++++|+++
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 160 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQE 160 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHH
Confidence 9999999998888888877766542 4799999999999975433233333221 1235689999999999999
Q ss_pred HHHHHHHHHhc
Q 030504 163 PFLYLARKLAG 173 (176)
Q Consensus 163 ~~~~l~~~i~~ 173 (176)
+|++|++.+.+
T Consensus 161 l~~~l~~~l~~ 171 (183)
T cd04152 161 GLEKLYEMILK 171 (183)
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 101
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=100.00 E-value=6.1e-33 Score=182.75 Aligned_cols=155 Identities=18% Similarity=0.286 Sum_probs=123.0
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEE
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (176)
....+||+++|++|||||||++++..+. ...+.++.|...... .. ..+.+.+||+||++.++..+..+++.+|++
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~-~~~~~~t~g~~~~~~--~~--~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 85 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGED-IDTISPTLGFQIKTL--EY--EGYKLNIWDVGGQKTLRPYWRNYFESTDAL 85 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCC-CCCcCCccccceEEE--EE--CCEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 3467899999999999999999987664 345667776444333 23 257899999999999888899999999999
Q ss_pred EEEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHHH-----HHcCCeEEEeccCCCCChHH
Q 030504 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v~~ 162 (176)
++|||++++.+++....|+..+... ..+.|+++|+||+|+.......+...+. ...+++++++||++|.|+++
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 165 (173)
T cd04154 86 IWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQ 165 (173)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHH
Confidence 9999999999998888777766432 3689999999999997654333333333 23467899999999999999
Q ss_pred HHHHHHH
Q 030504 163 PFLYLAR 169 (176)
Q Consensus 163 ~~~~l~~ 169 (176)
+|+|++.
T Consensus 166 l~~~l~~ 172 (173)
T cd04154 166 GIDWLVD 172 (173)
T ss_pred HHHHHhc
Confidence 9999874
No 102
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=5.1e-32 Score=177.72 Aligned_cols=160 Identities=34% Similarity=0.614 Sum_probs=137.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
..+||+++|++|||||||++++..+.+...+.++.+.+.....+..++..+.+.+||++|++.+...+..++..+|++++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 85 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 46899999999999999999998888877778888877777777788888899999999999998888899999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCc-cccCHH-HHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
|||++++.+++.+..|+..+.... .+.|+++|+||+|+.. +....+ ...+.+.....++++|+++|.|++++|++++
T Consensus 86 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 165 (169)
T cd04114 86 TYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLA 165 (169)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHH
Confidence 999999999999989988876654 3789999999999974 333333 3455666678999999999999999999999
Q ss_pred HHH
Q 030504 169 RKL 171 (176)
Q Consensus 169 ~~i 171 (176)
+.+
T Consensus 166 ~~~ 168 (169)
T cd04114 166 CRL 168 (169)
T ss_pred HHh
Confidence 865
No 103
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=100.00 E-value=7.6e-32 Score=179.51 Aligned_cols=158 Identities=30% Similarity=0.482 Sum_probs=130.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
.||+++|++|+|||||++++..+.+...+.++.+..+. .....++..+.+.+||++|++.+.......+..++++++||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 69999999999999999999888887777776653332 34455667788999999999988877777788999999999
Q ss_pred eCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCccc------------cCHHHHHHHHHcCC-eEEEeccCCCCC
Q 030504 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ------------VKAKQVTFHRKKNL-QYYEISAKSNYN 159 (176)
Q Consensus 94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~------------~~~~~~~~~~~~~~-~~~~~S~~~~~~ 159 (176)
|+++..+++.+. .|+..+....++.|+++|+||.|+.... ...+...+++..++ .+|+|||++|.|
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 160 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEG 160 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCC
Confidence 999999999986 5888887777789999999999985421 12345577777874 899999999999
Q ss_pred hHHHHHHHHHHHh
Q 030504 160 FEKPFLYLARKLA 172 (176)
Q Consensus 160 v~~~~~~l~~~i~ 172 (176)
++++|+++++.+.
T Consensus 161 v~~~f~~l~~~~~ 173 (187)
T cd04129 161 VDDVFEAATRAAL 173 (187)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998654
No 104
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=1.7e-32 Score=182.04 Aligned_cols=161 Identities=32% Similarity=0.569 Sum_probs=145.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
..+||+++|.+|+|||+|+.+|+.+.|.+.|.||++ +.......+++..+.+.++||+|++.+..+...++..++++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 579999999999999999999999999999999998 6677777888999999999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCc-ccc-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~-~~~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
||+++++.||+.+..+...+.+.. ...|+++|+||+|+.. +.+ .++...++...+++|+|+||+.+.+++++|..|
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 999999999999999999885432 4689999999999987 333 445678899999999999999999999999999
Q ss_pred HHHHhc
Q 030504 168 ARKLAG 173 (176)
Q Consensus 168 ~~~i~~ 173 (176)
++.+..
T Consensus 161 ~r~~~~ 166 (196)
T KOG0395|consen 161 VREIRL 166 (196)
T ss_pred HHHHHh
Confidence 997754
No 105
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=100.00 E-value=7.3e-32 Score=177.26 Aligned_cols=155 Identities=29% Similarity=0.519 Sum_probs=128.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|++|||||||++++..+.+...+.++.. +........++..+.+.+||+||++.+......+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 5899999999999999999999988666666664 333344556677889999999999998888888889999999999
Q ss_pred eCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCcccc-------------CHHHHHHHHHcCC-eEEEeccCCCC
Q 030504 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQV-------------KAKQVTFHRKKNL-QYYEISAKSNY 158 (176)
Q Consensus 94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~~-------------~~~~~~~~~~~~~-~~~~~S~~~~~ 158 (176)
|++++.++.... .|+..+....++.|+++|+||+|+..... ..+...++...++ +++++||++|.
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE 159 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence 999999988765 57777777667899999999999875442 2334566777777 99999999999
Q ss_pred ChHHHHHHHHH
Q 030504 159 NFEKPFLYLAR 169 (176)
Q Consensus 159 ~v~~~~~~l~~ 169 (176)
|++++|.++++
T Consensus 160 gi~~l~~~i~~ 170 (171)
T cd00157 160 GVKEVFEEAIR 170 (171)
T ss_pred CHHHHHHHHhh
Confidence 99999999875
No 106
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=100.00 E-value=2.9e-32 Score=179.39 Aligned_cols=156 Identities=24% Similarity=0.432 Sum_probs=129.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
.+.+||+++|+.+||||||++++..+.... ..||.|........ .++.+.+||.+|+..++..|+.++..++++|
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~~~i~~----~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iI 86 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNIEEIKY----KGYSLTIWDLGGQESFRPLWKSYFQNADGII 86 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEEEEEEE----TTEEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccccceeee----CcEEEEEEeccccccccccceeeccccceeE
Confidence 678999999999999999999987766543 67888877666555 6678999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHHH------HHcCCeEEEeccCCCCChHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH------RKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~~------~~~~~~~~~~S~~~~~~v~~ 162 (176)
||+|+++...+.+....+..+... ..+.|+++++||+|+.+.....+..... ....+.++.||+.+|+|+.+
T Consensus 87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e 166 (175)
T PF00025_consen 87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDE 166 (175)
T ss_dssp EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHH
T ss_pred EEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHH
Confidence 999999998888888777766553 3689999999999998755444433222 13456799999999999999
Q ss_pred HHHHHHHHH
Q 030504 163 PFLYLARKL 171 (176)
Q Consensus 163 ~~~~l~~~i 171 (176)
.++||.++|
T Consensus 167 ~l~WL~~~~ 175 (175)
T PF00025_consen 167 GLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcC
Confidence 999999875
No 107
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=100.00 E-value=7.1e-33 Score=180.19 Aligned_cols=163 Identities=26% Similarity=0.465 Sum_probs=145.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEec-CcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
..+|+++||...+|||+|+..+..+.|+..|.||.- +.....+.++ ++.+.+.+|||+|++.|..+++..|.++|+++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 568999999999999999999999999999999995 7777778885 99999999999999999998888999999999
Q ss_pred EEEeCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCccc--------------cCHHHHHHHHHcC-CeEEEecc
Q 030504 91 IMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ--------------VKAKQVTFHRKKN-LQYYEISA 154 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~--------------~~~~~~~~~~~~~-~~~~~~S~ 154 (176)
+||++.++.+++++. +|+..+.+.+++.|+++||+|.||.++. ..++..+++++.| ..|+||||
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa 161 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSA 161 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehh
Confidence 999999999999875 7999999999999999999999998421 1234567888888 68999999
Q ss_pred CCCCChHHHHHHHHHHHhcCC
Q 030504 155 KSNYNFEKPFLYLARKLAGST 175 (176)
Q Consensus 155 ~~~~~v~~~~~~l~~~i~~~~ 175 (176)
++..|+.++|+..+..+...+
T Consensus 162 ~tq~~v~~vF~~a~~~~l~~~ 182 (198)
T KOG0393|consen 162 LTQKGVKEVFDEAIRAALRPP 182 (198)
T ss_pred hhhCCcHHHHHHHHHHHhccc
Confidence 999999999999999887643
No 108
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=100.00 E-value=3.5e-32 Score=168.79 Aligned_cols=158 Identities=20% Similarity=0.352 Sum_probs=134.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
++++|+++|..||||||++++ +.+...+...||.|+....... +.+.+++||.+|+...++.|+.|+.++|++|+
T Consensus 15 rE~riLiLGLdNsGKTti~~k-l~~~~~~~i~pt~gf~Iktl~~----~~~~L~iwDvGGq~~lr~~W~nYfestdglIw 89 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKK-LLGEDTDTISPTLGFQIKTLEY----KGYTLNIWDVGGQKTLRSYWKNYFESTDGLIW 89 (185)
T ss_pred heeEEEEEecCCCCchhHHHH-hcCCCccccCCccceeeEEEEe----cceEEEEEEcCCcchhHHHHHHhhhccCeEEE
Confidence 489999999999999999999 4566677788999877776665 78899999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhh--hcCCCCEEEEEeCCCCCccccCH------HHHHHHHHcCCeEEEeccCCCCChHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKNRQVKA------KQVTFHRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~--~~~~~p~liv~nK~Dl~~~~~~~------~~~~~~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
|+|.+++..+++....+..+.. ...+.|+++++||.|+.+..... +..++++..+++++.||+.+|+++.+.
T Consensus 90 vvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~g 169 (185)
T KOG0073|consen 90 VVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEG 169 (185)
T ss_pred EEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHH
Confidence 9999999988888766655543 33578999999999998643322 234666888999999999999999999
Q ss_pred HHHHHHHHhcC
Q 030504 164 FLYLARKLAGS 174 (176)
Q Consensus 164 ~~~l~~~i~~~ 174 (176)
+.|++..+.++
T Consensus 170 idWL~~~l~~r 180 (185)
T KOG0073|consen 170 IDWLCDDLMSR 180 (185)
T ss_pred HHHHHHHHHHH
Confidence 99999988753
No 109
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=100.00 E-value=1.4e-32 Score=179.21 Aligned_cols=151 Identities=24% Similarity=0.393 Sum_probs=119.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC-CCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGE-FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+|+++|.++||||||++++..+. +...+.|+.|...... ....+.+.+|||||++.+...+..+++.+|++++|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESF----EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEE----EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 58999999999999999988775 3556778887654332 235678999999999999999999999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhh----cCCCCEEEEEeCCCCCccccCHHHHHHH-----HHcCCeEEEeccCCCCChHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRV----CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~----~~~~p~liv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v~~~~ 164 (176)
|++++.++..+..|+..+... ..+.|+++|+||+|+.+.....+..... ....+.++++||++|.|++++|
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~ 156 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGV 156 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHH
Confidence 999999988888777766542 1479999999999997643322222111 1123568999999999999999
Q ss_pred HHHHH
Q 030504 165 LYLAR 169 (176)
Q Consensus 165 ~~l~~ 169 (176)
+||.+
T Consensus 157 ~~l~~ 161 (162)
T cd04157 157 QWLQA 161 (162)
T ss_pred HHHhc
Confidence 99875
No 110
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=1.4e-31 Score=175.17 Aligned_cols=158 Identities=18% Similarity=0.288 Sum_probs=124.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|.+|||||||++++..+.+...+.++.. .........+..+.+.+|||+|.+.+...+..++..+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP--EITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc--ceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 4899999999999999999999988765443322 12233345567789999999999888777777889999999999
Q ss_pred eCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCccccC----HHHHHHHHHc-C-CeEEEeccCCCCChHHHHHH
Q 030504 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVK----AKQVTFHRKK-N-LQYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~----~~~~~~~~~~-~-~~~~~~S~~~~~~v~~~~~~ 166 (176)
|++++.+++.+. .|+..+....++.|+++|+||+|+.+.... .+...+.... + ..+++|||+++.|++++|..
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~ 158 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYY 158 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHH
Confidence 999999999975 677777665568999999999999764432 2222333333 2 48999999999999999999
Q ss_pred HHHHHhc
Q 030504 167 LARKLAG 173 (176)
Q Consensus 167 l~~~i~~ 173 (176)
+.+.+..
T Consensus 159 ~~~~~~~ 165 (166)
T cd01893 159 AQKAVLH 165 (166)
T ss_pred HHHHhcC
Confidence 9988754
No 111
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=100.00 E-value=1.1e-31 Score=174.54 Aligned_cols=156 Identities=33% Similarity=0.591 Sum_probs=133.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 94 (176)
||+++|++|||||||+++++.+.+...+.++.+ +........++..+.+.+||+||++.+...+..+++.+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998888777777766 4455555666677899999999999988889999999999999999
Q ss_pred CCChhhhhhHHHHHHHHhhhcC--CCCEEEEEeCCCCCc-cc-cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHH
Q 030504 95 VTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~--~~p~liv~nK~Dl~~-~~-~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
++++.++..+..|...+..... ..|+++++||+|+.. .. ...+...+++..+++++++|++++.|++++|++|++.
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 9999999999988888877654 899999999999976 22 2345567777788999999999999999999999876
Q ss_pred H
Q 030504 171 L 171 (176)
Q Consensus 171 i 171 (176)
+
T Consensus 160 i 160 (160)
T cd00876 160 I 160 (160)
T ss_pred C
Confidence 4
No 112
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=8.2e-34 Score=170.65 Aligned_cols=158 Identities=25% Similarity=0.538 Sum_probs=141.7
Q ss_pred EEEcCCCCcHHHHHHHHhcCCCC-CccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEEeC
Q 030504 17 VIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDV 95 (176)
Q Consensus 17 ~i~G~~~~GKttl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 95 (176)
+++|.+++|||+|+-||..|.|. .+..+|.|+++..+.+..+++.+++++|||+|+|++++...+||+.+|+.+++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 36899999999999998888775 45678999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc--cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHHHh
Q 030504 96 TARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 96 ~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~i~ 172 (176)
.+..||++...|+..+.+.. ....+.+++||||+..+. ...+...+++.++++|+++|+++|.|++..|-.|++.+.
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~ 160 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK 160 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence 99999999999999998875 467789999999996533 344577999999999999999999999999999998876
Q ss_pred cC
Q 030504 173 GS 174 (176)
Q Consensus 173 ~~ 174 (176)
+.
T Consensus 161 k~ 162 (192)
T KOG0083|consen 161 KL 162 (192)
T ss_pred Hh
Confidence 53
No 113
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=100.00 E-value=1.9e-31 Score=176.68 Aligned_cols=160 Identities=26% Similarity=0.385 Sum_probs=133.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
.||+++|.+|+|||||+++++.+.+...+.++.+... ......++..+.+.+||+||++++...+..++..++++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 6899999999999999999999888776667665333 334455666788999999999999888899999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccc-cC-HHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~-~~-~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
|+++..+++.+..|+..+.... .+.|+++++||+|+.... .. .+...+++..+++++++||+++.|+.++|.++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 9999999999998888776653 478999999999987432 22 2345667777899999999999999999999999
Q ss_pred HHhcC
Q 030504 170 KLAGS 174 (176)
Q Consensus 170 ~i~~~ 174 (176)
.+.+.
T Consensus 161 ~~~~~ 165 (180)
T cd04137 161 EIEKV 165 (180)
T ss_pred HHHHh
Confidence 87654
No 114
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=100.00 E-value=8.9e-32 Score=177.29 Aligned_cols=153 Identities=25% Similarity=0.377 Sum_probs=121.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
..+||+++|++++|||||++++..+.+.. +.++.+.+...... ..+.+.+||+||++.+...+..+++++|++++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEEIVY----KNIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEEEEE----CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 46899999999999999999998888765 56777765543322 46789999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHH-H----HHHcCCeEEEeccCCCCChHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-F----HRKKNLQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~-~----~~~~~~~~~~~S~~~~~~v~~~~ 164 (176)
|+|++++.++.....++..+.+. ..+.|+++++||+|+.......+... + .+..+++++++||++|+|++++|
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~ 168 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGL 168 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHH
Confidence 99999998888877766665433 25799999999999976432222221 1 12345689999999999999999
Q ss_pred HHHHH
Q 030504 165 LYLAR 169 (176)
Q Consensus 165 ~~l~~ 169 (176)
+||++
T Consensus 169 ~~l~~ 173 (174)
T cd04153 169 DWIAS 173 (174)
T ss_pred HHHhc
Confidence 99975
No 115
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=2.8e-31 Score=178.24 Aligned_cols=157 Identities=27% Similarity=0.412 Sum_probs=128.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 94 (176)
||+++|.+|||||||+++|+.+.+...+.++.+ +.....+...+..+.+.+||++|+..+..++..++..+|++++|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999988877777664 3444455666677899999999999998888889999999999999
Q ss_pred CCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCcc-c-cCH-HHHHHHH-HcCCeEEEeccCCCCChHHHHHHHH
Q 030504 95 VTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-Q-VKA-KQVTFHR-KKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~-~-~~~-~~~~~~~-~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
++++.+++.+..|+..+.... .+.|+++|+||.|+... . ... ...+... ..+..++++||++|.|++++|++++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 999999999999888777654 47999999999998652 2 222 2222222 4467899999999999999999999
Q ss_pred HHHh
Q 030504 169 RKLA 172 (176)
Q Consensus 169 ~~i~ 172 (176)
+.+.
T Consensus 160 ~~~~ 163 (198)
T cd04147 160 RQAN 163 (198)
T ss_pred HHhh
Confidence 9765
No 116
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=100.00 E-value=8.8e-32 Score=176.16 Aligned_cols=150 Identities=24% Similarity=0.304 Sum_probs=120.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 94 (176)
+|+++|+++||||||++++..+ +...+.||.|...... . ...+.+.+||+||++.++..+..+++++|++++|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~~~--~--~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPTKL--R--LDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEEEE--E--ECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999997755 7677788888654332 2 256789999999999999999999999999999999
Q ss_pred CCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHH------HHHHHc--CCeEEEeccCCC------C
Q 030504 95 VTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV------TFHRKK--NLQYYEISAKSN------Y 158 (176)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~------~~~~~~--~~~~~~~S~~~~------~ 158 (176)
++++.+++.+..|+..+... ..+.|+++|+||+|+.+.....+.. .++++. .+.+++|||++| .
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~ 155 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP 155 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence 99999999999888877654 2589999999999998654322222 223222 367888999998 8
Q ss_pred ChHHHHHHHHH
Q 030504 159 NFEKPFLYLAR 169 (176)
Q Consensus 159 ~v~~~~~~l~~ 169 (176)
|+++.|+||..
T Consensus 156 g~~~~~~wl~~ 166 (167)
T cd04161 156 SIVEGLRWLLA 166 (167)
T ss_pred CHHHHHHHHhc
Confidence 99999999975
No 117
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=100.00 E-value=1.5e-31 Score=178.71 Aligned_cols=156 Identities=18% Similarity=0.302 Sum_probs=122.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
.+.+||+++|++|||||||++++..+.+. .+.++.+..... +.. ..+.+.+||+||++.+...+..+++++++++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~~~--i~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~ii 91 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTSEE--LTI--GNIKFKTFDLGGHEQARRLWKDYFPEVDGIV 91 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcceEE--EEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 45799999999999999999998877764 456666654333 233 3467899999999988888899999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHHHHH----------------cCCeEEEe
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRK----------------KNLQYYEI 152 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~----------------~~~~~~~~ 152 (176)
+|+|+++..+++....++..+... ..+.|+++++||+|+.+.....+...+... ..+.+++|
T Consensus 92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (190)
T cd00879 92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMC 171 (190)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEe
Confidence 999999998888777777766543 257999999999999764444444444332 23568999
Q ss_pred ccCCCCChHHHHHHHHHHH
Q 030504 153 SAKSNYNFEKPFLYLARKL 171 (176)
Q Consensus 153 S~~~~~~v~~~~~~l~~~i 171 (176)
||++|+|++++|+||++.+
T Consensus 172 Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 172 SVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred EecCCCChHHHHHHHHhhC
Confidence 9999999999999998753
No 118
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=100.00 E-value=3.3e-31 Score=177.10 Aligned_cols=146 Identities=19% Similarity=0.312 Sum_probs=124.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEec-----CcEEEEEEEeCCCccccccccccccccccE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-----CGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
+||+++|.++||||||++++..+.+...+.+|.|.++......+. +..+.+.+|||+|++.+..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999998889999977776666553 467899999999999999999999999999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhh--------------------cCCCCEEEEEeCCCCCccc-cCH-----HHHHHH
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRV--------------------CENIPIVLCGNKVDVKNRQ-VKA-----KQVTFH 142 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--------------------~~~~p~liv~nK~Dl~~~~-~~~-----~~~~~~ 142 (176)
+|+|||++++.+++.+..|+..+... .++.|+++|+||+|+.++. ... ....++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 99999999999999999999888653 1368999999999997643 222 233678
Q ss_pred HHcCCeEEEeccCCCCC
Q 030504 143 RKKNLQYYEISAKSNYN 159 (176)
Q Consensus 143 ~~~~~~~~~~S~~~~~~ 159 (176)
.+.+++.++.+++++..
T Consensus 161 ~~~~~~~i~~~c~~~~~ 177 (202)
T cd04102 161 EQGNAEEINLNCTNGRL 177 (202)
T ss_pred HhcCCceEEEecCCccc
Confidence 88999999999887664
No 119
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.98 E-value=2.5e-31 Score=174.11 Aligned_cols=151 Identities=24% Similarity=0.397 Sum_probs=117.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC------CCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGE------FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
||+++|++|+|||||++++.... ....+.++.+........ ....+.+|||||++.+...+..++..+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV----GNARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE----CCEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 68999999999999999976432 223445555554433322 36789999999999999889999999999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHHHHH-------cCCeEEEeccCCCCC
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRK-------KNLQYYEISAKSNYN 159 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~-------~~~~~~~~S~~~~~~ 159 (176)
+++|+|++++.++.....|+..+.+. ..+.|+++++||+|+.......+...+... .+++++++||++|.|
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 156 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTG 156 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcC
Confidence 99999999988888888777776553 258999999999998765433333333322 346899999999999
Q ss_pred hHHHHHHHHH
Q 030504 160 FEKPFLYLAR 169 (176)
Q Consensus 160 v~~~~~~l~~ 169 (176)
++++++||+.
T Consensus 157 v~e~~~~l~~ 166 (167)
T cd04160 157 VREGIEWLVE 166 (167)
T ss_pred HHHHHHHHhc
Confidence 9999999974
No 120
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.97 E-value=3.5e-31 Score=172.28 Aligned_cols=151 Identities=19% Similarity=0.314 Sum_probs=118.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 94 (176)
+|+++|++|||||||++++..+.+.. ..++.+.+..... . ...+.+.+||++|++.+...+..++..+|++++|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~~~~--~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVEMLQ--L-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceEEEE--e-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999999888754 3567665543322 2 345789999999999988889999999999999999
Q ss_pred CCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHH------HHHHcCCeEEEeccCCCCChHHHHHH
Q 030504 95 VTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT------FHRKKNLQYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~------~~~~~~~~~~~~S~~~~~~v~~~~~~ 166 (176)
++++.++.....|+..+.+. ..+.|+++|+||+|+.......+... +....++++++|||++|+|++++|++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~ 156 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRK 156 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHH
Confidence 99998888888777766543 25899999999999965322222221 12223467999999999999999999
Q ss_pred HHH
Q 030504 167 LAR 169 (176)
Q Consensus 167 l~~ 169 (176)
|++
T Consensus 157 i~~ 159 (160)
T cd04156 157 LAS 159 (160)
T ss_pred Hhc
Confidence 864
No 121
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.97 E-value=6.7e-31 Score=170.64 Aligned_cols=150 Identities=21% Similarity=0.324 Sum_probs=115.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 94 (176)
||+++|++++|||||++++..+.+.. +.++.+.+.... +...+.+.+|||||++.+...+..++..++++++|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~~----~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVETV----TYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeEEE----EECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999987777653 456666554322 2256789999999999999999999999999999999
Q ss_pred CCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHHH-----HHcCCeEEEeccCCCCChHHHHHHH
Q 030504 95 VTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
++++.++.....++..+.+. ..+.|+++|+||+|+.+.....+..... ...+++++++||+++.|++++|+||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 155 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWL 155 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHH
Confidence 99988877666655544332 2579999999999997543222222211 1223579999999999999999999
Q ss_pred HH
Q 030504 168 AR 169 (176)
Q Consensus 168 ~~ 169 (176)
++
T Consensus 156 ~~ 157 (158)
T cd04151 156 VN 157 (158)
T ss_pred hc
Confidence 75
No 122
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=7.9e-31 Score=174.14 Aligned_cols=156 Identities=17% Similarity=0.280 Sum_probs=121.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
.+.++|+++|.+|||||||++++..+.+. .+.|+.+.+..... . ..+.+.+||+||++.++..+..++..+|+++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~~~~~--~--~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTSEELA--I--GNIKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccceEEEE--E--CCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 45699999999999999999998877654 34555554433222 2 4578899999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHHHH------------HcCCeEEEeccCC
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR------------KKNLQYYEISAKS 156 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~~~------------~~~~~~~~~S~~~ 156 (176)
+|+|++++.++.....++..+.+. ..+.|+++|+||+|+.......+..+... ...+.+++|||++
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~ 169 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVR 169 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeeccc
Confidence 999999999888888777766543 25899999999999975443333332221 1235699999999
Q ss_pred CCChHHHHHHHHHHH
Q 030504 157 NYNFEKPFLYLARKL 171 (176)
Q Consensus 157 ~~~v~~~~~~l~~~i 171 (176)
+.|++++++||..++
T Consensus 170 ~~g~~~~~~wl~~~~ 184 (184)
T smart00178 170 RMGYGEGFKWLSQYI 184 (184)
T ss_pred CCChHHHHHHHHhhC
Confidence 999999999998753
No 123
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.97 E-value=1.6e-30 Score=168.91 Aligned_cols=150 Identities=23% Similarity=0.376 Sum_probs=120.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 94 (176)
||+++|.+|||||||++++..+. ...+.++.+.+...... ..+.+.+||+||++.+...+..+++.+|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~-~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE-VVTTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCcCcceEEEEE----CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 68999999999999999988776 34556777765554433 35789999999999999999999999999999999
Q ss_pred CCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHHH-----HHcCCeEEEeccCCCCChHHHHHHH
Q 030504 95 VTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
++++.++.....++..+... ..+.|+++++||+|+.......+..... ....++++++||++|.|++++|++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l 155 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWL 155 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHH
Confidence 99999999888877766553 2589999999999997654333322222 2245689999999999999999998
Q ss_pred HH
Q 030504 168 AR 169 (176)
Q Consensus 168 ~~ 169 (176)
..
T Consensus 156 ~~ 157 (158)
T cd00878 156 LQ 157 (158)
T ss_pred hh
Confidence 75
No 124
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.5e-30 Score=163.24 Aligned_cols=161 Identities=24% Similarity=0.360 Sum_probs=138.0
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
....+.+|+++|..++||||++.++..++.... .||+|+......+ +.+.|.+||.+|+++++..|+.|+++.++
T Consensus 13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~ 87 (181)
T KOG0070|consen 13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQG 87 (181)
T ss_pred cCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCcE
Confidence 456789999999999999999999888888766 8999988888777 68899999999999999999999999999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccccCHHHHHH-----HHHcCCeEEEeccCCCCChH
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFE 161 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~~v~ 161 (176)
+|||+|.+|+..+.++...+..+.... .+.|+++++||.|+++.-...+..+. .+...+.+..|+|.+|+|+.
T Consensus 88 lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~ 167 (181)
T KOG0070|consen 88 LIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLY 167 (181)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHH
Confidence 999999999999988887666665543 58999999999999986655444322 22345788999999999999
Q ss_pred HHHHHHHHHHhcC
Q 030504 162 KPFLYLARKLAGS 174 (176)
Q Consensus 162 ~~~~~l~~~i~~~ 174 (176)
|.++|+.+.+..+
T Consensus 168 egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 168 EGLDWLSNNLKKR 180 (181)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999988764
No 125
>PLN00023 GTP-binding protein; Provisional
Probab=99.97 E-value=2.4e-29 Score=175.83 Aligned_cols=140 Identities=21% Similarity=0.390 Sum_probs=119.6
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEec-------------CcEEEEEEEeCCCccc
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-------------CGKIRFYCWDTAGQEK 74 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~g~~~ 74 (176)
-++...+||+++|..|||||||+++|..+.+...+.+|+|.++....+.++ +..+.+.+|||+|++.
T Consensus 16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr 95 (334)
T PLN00023 16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER 95 (334)
T ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence 345678999999999999999999999999988889999988876666553 2568899999999999
Q ss_pred cccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhc-------------CCCCEEEEEeCCCCCccc--------
Q 030504 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-------------ENIPIVLCGNKVDVKNRQ-------- 133 (176)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------~~~p~liv~nK~Dl~~~~-------- 133 (176)
++.++..++++++++|+|||+++..+++.+..|+..+.... .+.|+++|+||+||..+.
T Consensus 96 frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~ 175 (334)
T PLN00023 96 YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGN 175 (334)
T ss_pred hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccc
Confidence 99999999999999999999999999999999999887652 248999999999996532
Q ss_pred cCHHHHHHHHHcCC
Q 030504 134 VKAKQVTFHRKKNL 147 (176)
Q Consensus 134 ~~~~~~~~~~~~~~ 147 (176)
..++...+++++++
T Consensus 176 ~~e~a~~~A~~~g~ 189 (334)
T PLN00023 176 LVDAARQWVEKQGL 189 (334)
T ss_pred cHHHHHHHHHHcCC
Confidence 23456788888774
No 126
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.97 E-value=2e-29 Score=166.85 Aligned_cols=155 Identities=16% Similarity=0.207 Sum_probs=115.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC-------CCCcccc------ceeEEEeEEEEEe-----cCcEEEEEEEeCCCccccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGE-------FEKKYEP------TIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFG 76 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~~~D~~g~~~~~ 76 (176)
+|+++|.+++|||||+++|+... +...+.+ +.|.+........ ++..+.+.+|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 79999999999999999987632 1112222 2344444333322 5677889999999999999
Q ss_pred cccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCC---eEEEec
Q 030504 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYEIS 153 (176)
Q Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~~S 153 (176)
..+..+++.+|++++|+|+++..+.+....|.... . .+.|+++|+||+|+.+........++++..++ .++++|
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E--NNLEIIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILVS 158 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H--cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEEee
Confidence 88889999999999999999876666665554332 2 37899999999998653322223345555555 489999
Q ss_pred cCCCCChHHHHHHHHHHHh
Q 030504 154 AKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 154 ~~~~~~v~~~~~~l~~~i~ 172 (176)
|++|.|++++|+++++.+.
T Consensus 159 a~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 159 AKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred ccCCCCHHHHHHHHHhhCC
Confidence 9999999999999998764
No 127
>PTZ00099 rab6; Provisional
Probab=99.97 E-value=9.5e-29 Score=162.49 Aligned_cols=140 Identities=29% Similarity=0.530 Sum_probs=122.6
Q ss_pred CCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhc
Q 030504 36 GEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC 115 (176)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 115 (176)
+.|.+.+.+|.|.++....+.+++..+.+.+|||+|++++...+..+++.+|++|+|||++++.+|+.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 56777889999999988888888889999999999999999999999999999999999999999999999998886553
Q ss_pred -CCCCEEEEEeCCCCCcc-c-cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHHHhcCC
Q 030504 116 -ENIPIVLCGNKVDVKNR-Q-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGST 175 (176)
Q Consensus 116 -~~~p~liv~nK~Dl~~~-~-~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~i~~~~ 175 (176)
++.|+++|+||+|+... . ...+...+++..++.++++||++|.|++++|.||++.+.+.+
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 57899999999999642 2 233456778888999999999999999999999999987654
No 128
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.97 E-value=9.9e-29 Score=161.96 Aligned_cols=155 Identities=15% Similarity=0.124 Sum_probs=108.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccc---------ccccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD---------GYYIH 85 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~---------~~~~~ 85 (176)
+|+++|.+|+|||||++++..+.+... +..+.+............+.+.+|||||+.......+ .....
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVA--PYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccC--CCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 799999999999999999888766422 1112222222222333567899999999843111100 11123
Q ss_pred ccEEEEEEeCCChhhh--hhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChHHH
Q 030504 86 GQCAIIMFDVTARLTY--KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 86 ~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
+|++++|+|+++..++ +....|+..+.....+.|+++|+||+|+.......+...+.+..+++++++||++|.|++++
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 159 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGVDEV 159 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEecccCCHHHH
Confidence 6899999999987643 55556777776555689999999999997644333344555556789999999999999999
Q ss_pred HHHHHHHH
Q 030504 164 FLYLARKL 171 (176)
Q Consensus 164 ~~~l~~~i 171 (176)
|+++++.+
T Consensus 160 ~~~l~~~~ 167 (168)
T cd01897 160 KNKACELL 167 (168)
T ss_pred HHHHHHHh
Confidence 99999876
No 129
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.7e-29 Score=160.50 Aligned_cols=166 Identities=81% Similarity=1.295 Sum_probs=156.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
...++++++|..|.||||++++++.|+|...+.++.|.+.....+..+...+.|..|||.|+|.+......++-++.++|
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 67899999999999999999999999999999999999999988876666799999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
++||+..+..+.++..|...+...+.++|+++++||.|...+....+...+-+..++.|++.|++.+-|++.-|-|++++
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~LarK 167 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKARKVKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLARK 167 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccccccccccceeeecccceeEEeecccccccccchHHHhhh
Confidence 99999999999999999999999999999999999999998887788888999999999999999999999999999999
Q ss_pred HhcCCC
Q 030504 171 LAGSTD 176 (176)
Q Consensus 171 i~~~~~ 176 (176)
+..+|+
T Consensus 168 l~G~p~ 173 (216)
T KOG0096|consen 168 LTGDPS 173 (216)
T ss_pred hcCCCC
Confidence 987764
No 130
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.97 E-value=6.1e-29 Score=161.23 Aligned_cols=150 Identities=24% Similarity=0.426 Sum_probs=120.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEEeC
Q 030504 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDV 95 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 95 (176)
|+++|++|||||||++++..+.+...+.++.+....... . ..+.+.+||+||++.+...+..++..+|++++|+|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~--~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVT--K--GNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEE--E--CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 789999999999999999998888888888876554322 2 337899999999999999999999999999999999
Q ss_pred CChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHH-----HHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 96 TARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 96 ~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
++..++.....++..+... ..+.|+++|+||.|+.......+.... .....++++++|++++.|++++++++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 157 (159)
T cd04159 78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLI 157 (159)
T ss_pred CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHh
Confidence 9998888777766666543 258899999999998764332222211 122346899999999999999999987
Q ss_pred H
Q 030504 169 R 169 (176)
Q Consensus 169 ~ 169 (176)
+
T Consensus 158 ~ 158 (159)
T cd04159 158 K 158 (159)
T ss_pred h
Confidence 5
No 131
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.96 E-value=5.2e-29 Score=164.03 Aligned_cols=155 Identities=17% Similarity=0.320 Sum_probs=116.8
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEE
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (176)
..+.++|+++|++|||||||++++....+. .+.++.|.+...... .+..+.+||++|+..+...+..+++.++++
T Consensus 11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~~i~~----~~~~~~~~D~~G~~~~~~~~~~~~~~~~~i 85 (173)
T cd04155 11 SSEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNIKTVQS----DGFKLNVWDIGGQRAIRPYWRNYFENTDCL 85 (173)
T ss_pred cCCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEEEE----CCEEEEEEECCCCHHHHHHHHHHhcCCCEE
Confidence 345899999999999999999997765443 356666654443332 356789999999988888888889999999
Q ss_pred EEEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHHHHH-----cCCeEEEeccCCCCChHH
Q 030504 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRK-----KNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~~v~~ 162 (176)
++|+|+++..++.....++..+... ..+.|+++++||+|+.+.....+..+.... ..+.++++||++|+|+++
T Consensus 86 i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~ 165 (173)
T cd04155 86 IYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQE 165 (173)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHH
Confidence 9999999988888777666555433 247999999999998754322222221111 123578999999999999
Q ss_pred HHHHHHH
Q 030504 163 PFLYLAR 169 (176)
Q Consensus 163 ~~~~l~~ 169 (176)
+|+||++
T Consensus 166 ~~~~l~~ 172 (173)
T cd04155 166 GMNWVCK 172 (173)
T ss_pred HHHHHhc
Confidence 9999976
No 132
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.96 E-value=9.1e-31 Score=165.05 Aligned_cols=163 Identities=32% Similarity=0.571 Sum_probs=150.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
...+|++|+|..++||||++++|..|-|...+..++|+++......+....+...+||++|++++..+..+||+++.+.+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v 97 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV 97 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence 46799999999999999999999999999999999999988888888778888899999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc--CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
+||+.+|+.+|+....|.+.+...+..+|.++|-||.|+..+.. ..+...+++.+++.++.+|++...|+..+|.+|+
T Consensus 98 LVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YLa 177 (246)
T KOG4252|consen 98 LVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLA 177 (246)
T ss_pred EEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHH
Confidence 99999999999999999999999889999999999999986443 3346688999999999999999999999999999
Q ss_pred HHHhc
Q 030504 169 RKLAG 173 (176)
Q Consensus 169 ~~i~~ 173 (176)
.++.+
T Consensus 178 eK~~q 182 (246)
T KOG4252|consen 178 EKLTQ 182 (246)
T ss_pred HHHHH
Confidence 88754
No 133
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.9e-28 Score=147.77 Aligned_cols=158 Identities=21% Similarity=0.317 Sum_probs=132.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
..+++|+.+|..++||||++..+..+.. ....||.|+.....++ +.+.|.+||.+|+.+.+.+|++|+.+..++|
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnvetVty----kN~kfNvwdvGGqd~iRplWrhYy~gtqglI 89 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVETVTY----KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 89 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCC-cccccccceeEEEEEe----eeeEEeeeeccCchhhhHHHHhhccCCceEE
Confidence 4689999999999999999999655544 4568899988777766 8889999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHH-----HHHcCCeEEEeccCCCCChHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
||+|..++...++++..+..+... ..+.|+++.+||.|+++....++...+ ++...+-+..+|+.+|+|+.|-
T Consensus 90 FV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eg 169 (180)
T KOG0071|consen 90 FVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEG 169 (180)
T ss_pred EEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccchhHHHH
Confidence 999999998888887655555433 258899999999999987776665433 4456688999999999999999
Q ss_pred HHHHHHHHhc
Q 030504 164 FLYLARKLAG 173 (176)
Q Consensus 164 ~~~l~~~i~~ 173 (176)
|.|+...+.+
T Consensus 170 lswlsnn~~~ 179 (180)
T KOG0071|consen 170 LSWLSNNLKE 179 (180)
T ss_pred HHHHHhhccC
Confidence 9999988764
No 134
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.96 E-value=9e-28 Score=157.69 Aligned_cols=153 Identities=15% Similarity=0.113 Sum_probs=107.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEE--EEEecCcEEEEEEEeCCCccc----cccccccc---ccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL--DFFTNCGKIRFYCWDTAGQEK----FGGLRDGY---YIH 85 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~D~~g~~~----~~~~~~~~---~~~ 85 (176)
+|+++|.+|||||||++++........ ...+.+.... ..... ....+.+|||||+.. .+.+...+ +..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~--~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIA--DYPFTTLVPNLGVVRVD-DGRSFVVADIPGLIEGASEGKGLGHRFLRHIER 78 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcccc--CCCccccCCcceEEEcC-CCCeEEEEecCcccCcccccCCchHHHHHHHHh
Confidence 689999999999999999875443211 1111111111 12222 224789999999642 22233333 345
Q ss_pred ccEEEEEEeCCCh-hhhhhHHHHHHHHhhhc---CCCCEEEEEeCCCCCccccCHH-HHHHHHH-cCCeEEEeccCCCCC
Q 030504 86 GQCAIIMFDVTAR-LTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAK-QVTFHRK-KNLQYYEISAKSNYN 159 (176)
Q Consensus 86 ~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~p~liv~nK~Dl~~~~~~~~-~~~~~~~-~~~~~~~~S~~~~~~ 159 (176)
+|++++|+|++++ .+++.+..|.+.+.... .+.|+++|+||+|+.++....+ ...+... .+.+++++|++++.|
T Consensus 79 ~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 158 (170)
T cd01898 79 TRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEG 158 (170)
T ss_pred CCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCC
Confidence 9999999999998 78888888888776653 3789999999999976544333 3344444 378899999999999
Q ss_pred hHHHHHHHHHH
Q 030504 160 FEKPFLYLARK 170 (176)
Q Consensus 160 v~~~~~~l~~~ 170 (176)
++++|+++++.
T Consensus 159 i~~l~~~i~~~ 169 (170)
T cd01898 159 LDELLRKLAEL 169 (170)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 135
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.96 E-value=5.5e-27 Score=151.88 Aligned_cols=156 Identities=27% Similarity=0.462 Sum_probs=124.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
.+||+++|.+|+|||||++++..+.+...+.++.+.+........++..+.+.+||+||++.+...+..+..+++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 47999999999999999999998887777777777777666666666668899999999999888888888999999999
Q ss_pred EeCCCh-hhhhhHH-HHHHHHhhhcC-CCCEEEEEeCCCCCccccCHHHHHHHHH-cCCeEEEeccCCCCChHHHHHHHH
Q 030504 93 FDVTAR-LTYKNVP-TWHRDLCRVCE-NIPIVLCGNKVDVKNRQVKAKQVTFHRK-KNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 93 ~d~~~~-~s~~~~~-~~~~~~~~~~~-~~p~liv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
+|.... .++.... .|...+..... +.|+++++||+|+............... ...+++++||+++.|++++|++|.
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence 999877 5665554 55555555444 8899999999999775544443333333 456899999999999999999874
No 136
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.95 E-value=1.4e-27 Score=152.40 Aligned_cols=133 Identities=20% Similarity=0.227 Sum_probs=97.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcc-----ccccccccccccccEE
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE-----KFGGLRDGYYIHGQCA 89 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-----~~~~~~~~~~~~~~~~ 89 (176)
||+++|.+|||||||++++..+.+. +.++.+.++. -.+|||||.. .+..... .++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~~~------------~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVEYN------------DGAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEEEc------------CeeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 8999999999999999998876542 3344332221 1689999972 2333333 47899999
Q ss_pred EEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccC-HHHHHHHHHcCC-eEEEeccCCCCChHHHHHHH
Q 030504 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~-~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~~~l 167 (176)
++|||++++.++... .|.... ..|+++|+||+|+.++... ++..++++..+. +++++||++|.|++++|+++
T Consensus 67 ilv~d~~~~~s~~~~-~~~~~~-----~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 140 (142)
T TIGR02528 67 ALVQSATDPESRFPP-GFASIF-----VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDYL 140 (142)
T ss_pred EEEecCCCCCcCCCh-hHHHhc-----cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHH
Confidence 999999999887653 343322 3499999999999754333 334566667666 79999999999999999998
Q ss_pred H
Q 030504 168 A 168 (176)
Q Consensus 168 ~ 168 (176)
+
T Consensus 141 ~ 141 (142)
T TIGR02528 141 N 141 (142)
T ss_pred h
Confidence 5
No 137
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.95 E-value=6.1e-27 Score=152.80 Aligned_cols=153 Identities=14% Similarity=0.044 Sum_probs=102.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC---CCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTG---EFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
..|+++|.++||||||++++... .+...+.++...+.......... ...+.+|||||++++......++.++|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 36899999999999999998743 23322223222233333333331 457899999999988766667788999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc----CHHHHHHHHH---cCCeEEEeccCCCCChHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRK---KNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~----~~~~~~~~~~---~~~~~~~~S~~~~~~v~~~ 163 (176)
+|+|+++....+ ....+..+... ...|+++++||+|+..... ..+..+.++. .+.+++++|++++.|++++
T Consensus 80 ~V~d~~~~~~~~-~~~~~~~~~~~-~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 157 (164)
T cd04171 80 LVVAADEGIMPQ-TREHLEILELL-GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEEL 157 (164)
T ss_pred EEEECCCCccHh-HHHHHHHHHHh-CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHH
Confidence 999998732111 11111222221 2349999999999975421 1223344444 4679999999999999999
Q ss_pred HHHHHH
Q 030504 164 FLYLAR 169 (176)
Q Consensus 164 ~~~l~~ 169 (176)
++++.+
T Consensus 158 ~~~l~~ 163 (164)
T cd04171 158 KEYLDE 163 (164)
T ss_pred HHHHhh
Confidence 998764
No 138
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.95 E-value=1.7e-26 Score=157.46 Aligned_cols=162 Identities=35% Similarity=0.536 Sum_probs=133.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
..+||+++|++|||||||+++|..+.+...+.++.+..............+.+.+|||+|+++++..+..++.+++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 34999999999999999999999999999999998877777776666568899999999999999999999999999999
Q ss_pred EEeCCCh-hhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccccCH-------------H-HHHHHHH---cCCeEEEe
Q 030504 92 MFDVTAR-LTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKA-------------K-QVTFHRK---KNLQYYEI 152 (176)
Q Consensus 92 v~d~~~~-~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~~~~-------------~-~~~~~~~---~~~~~~~~ 152 (176)
|+|..+. .+++....|...+.... .+.|+++++||+|+..+.... . ....... ....++++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence 9999994 55566678888888876 479999999999998754211 1 1111111 23349999
Q ss_pred ccC--CCCChHHHHHHHHHHHhc
Q 030504 153 SAK--SNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 153 S~~--~~~~v~~~~~~l~~~i~~ 173 (176)
|++ .+.++.++|..+...+.+
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~~~ 186 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKLLE 186 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHHHH
Confidence 999 999999999999988754
No 139
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.95 E-value=3.8e-27 Score=157.80 Aligned_cols=146 Identities=16% Similarity=0.206 Sum_probs=107.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc--CCCCCcc------------ccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT--GEFEKKY------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR 79 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 79 (176)
.+|+++|.+++|||||+++++. +.+...+ ..+.|.+.......++...+.+.+|||||++++...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 5899999999999999999886 5554332 2345666666666666677899999999999999999
Q ss_pred ccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc---CHHHHHHHH-------HcCCeE
Q 030504 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQVTFHR-------KKNLQY 149 (176)
Q Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~---~~~~~~~~~-------~~~~~~ 149 (176)
..+++++|++++|+|+++.. +.....++..+.. .+.|+++|+||+|+..... ..+..+++. ..++++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 159 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE--LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPV 159 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCE
Confidence 99999999999999998742 2222333333333 3789999999999975332 222333332 236889
Q ss_pred EEeccCCCCChHH
Q 030504 150 YEISAKSNYNFEK 162 (176)
Q Consensus 150 ~~~S~~~~~~v~~ 162 (176)
+++||++|.|+.+
T Consensus 160 v~~Sa~~g~~~~~ 172 (194)
T cd01891 160 LYASAKNGWASLN 172 (194)
T ss_pred EEeehhccccccc
Confidence 9999999988743
No 140
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.95 E-value=9.4e-27 Score=157.10 Aligned_cols=157 Identities=16% Similarity=0.087 Sum_probs=108.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc--c------cccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--L------RDGY 82 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--~------~~~~ 82 (176)
...++|+++|++|||||||++++..+.......+....+........++. ..+.+|||||...... . ....
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 117 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTLEE 117 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHHHH
Confidence 34589999999999999999998877643221222222222222333322 3788999999732110 1 0112
Q ss_pred cccccEEEEEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChH
Q 030504 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (176)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~ 161 (176)
+..+|++++|+|++++.++.....|...+.... .+.|+++|+||+|+....... ..+...+.+++++||+++.|++
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~---~~~~~~~~~~~~~Sa~~~~gi~ 194 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE---ERLEAGRPDAVFISAKTGEGLD 194 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH---HHhhcCCCceEEEEcCCCCCHH
Confidence 567999999999999887777666665554432 478999999999997643322 4445567789999999999999
Q ss_pred HHHHHHHHHH
Q 030504 162 KPFLYLARKL 171 (176)
Q Consensus 162 ~~~~~l~~~i 171 (176)
+++++|.+.+
T Consensus 195 ~l~~~L~~~~ 204 (204)
T cd01878 195 ELLEAIEELL 204 (204)
T ss_pred HHHHHHHhhC
Confidence 9999998764
No 141
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.95 E-value=2e-27 Score=145.23 Aligned_cols=157 Identities=22% Similarity=0.365 Sum_probs=130.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
.+..+.++|..++|||||+|....|.+.+...|+.|+....++ ...+.+.+||.||+.+++++|..|.+.+++++|
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~t----kgnvtiklwD~gGq~rfrsmWerycR~v~aivY 94 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY 94 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEec----cCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence 5678999999999999999999999999888999986555443 366789999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccccCHHHHHH-----HHHcCCeEEEeccCCCCChHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~~v~~~~ 164 (176)
|+|+.++..+......+..+.... .++|+++++||.|+++.....+..+. .....+.+|.+|++...|++.+.
T Consensus 95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~ 174 (186)
T KOG0075|consen 95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITL 174 (186)
T ss_pred EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHH
Confidence 999999988877776666665553 69999999999999987655443322 12234678999999999999999
Q ss_pred HHHHHHHh
Q 030504 165 LYLARKLA 172 (176)
Q Consensus 165 ~~l~~~i~ 172 (176)
+||++...
T Consensus 175 ~Wli~hsk 182 (186)
T KOG0075|consen 175 DWLIEHSK 182 (186)
T ss_pred HHHHHHhh
Confidence 99998754
No 142
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.95 E-value=3.7e-26 Score=149.72 Aligned_cols=155 Identities=15% Similarity=0.145 Sum_probs=108.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEec-CcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
.|+++|.+|+|||||++++..+.+.....+....+......... .....+.+|||||++.+...+..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 48999999999999999999887765433333222222223222 14678899999999988888888889999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCH---HHHHHHH------HcCCeEEEeccCCCCChHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---KQVTFHR------KKNLQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~---~~~~~~~------~~~~~~~~~S~~~~~~v~~~~ 164 (176)
|+++....+.. ..+..+.. .+.|+++|+||+|+....... ....+.. ...++++++|++++.|+++++
T Consensus 82 d~~~~~~~~~~-~~~~~~~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 158 (168)
T cd01887 82 AADDGVMPQTI-EAIKLAKA--ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLL 158 (168)
T ss_pred ECCCCccHHHH-HHHHHHHH--cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHH
Confidence 99875322211 11222222 378999999999987533211 1111111 123689999999999999999
Q ss_pred HHHHHHHh
Q 030504 165 LYLARKLA 172 (176)
Q Consensus 165 ~~l~~~i~ 172 (176)
++|.+...
T Consensus 159 ~~l~~~~~ 166 (168)
T cd01887 159 EAILLLAE 166 (168)
T ss_pred HHHHHhhh
Confidence 99988654
No 143
>PRK15494 era GTPase Era; Provisional
Probab=99.94 E-value=4.1e-26 Score=163.81 Aligned_cols=159 Identities=18% Similarity=0.269 Sum_probs=108.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccc-cccccc-------cc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-FGGLRD-------GY 82 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~-------~~ 82 (176)
.+.++|+++|.+|||||||+|+++++.+. ...+..++++.............+.+|||||... +..+.. ..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~-ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~ 128 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLS-IVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSS 128 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCcee-eccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHH
Confidence 35569999999999999999998876653 2233334443333322223445789999999843 222221 23
Q ss_pred cccccEEEEEEeCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcC--CeEEEeccCCCCC
Q 030504 83 YIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSNYN 159 (176)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~S~~~~~~ 159 (176)
+..+|++++|+|..+ ++.... .|+..+... +.|.++|+||+|+.+.. ..+..+.+...+ ..++++||++|.|
T Consensus 129 l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~~-~~~~~~~l~~~~~~~~i~~iSAktg~g 203 (339)
T PRK15494 129 LHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIESKY-LNDIKAFLTENHPDSLLFPISALSGKN 203 (339)
T ss_pred hhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCcccc-HHHHHHHHHhcCCCcEEEEEeccCccC
Confidence 678999999999765 344443 344444433 56778899999997542 233445554443 6799999999999
Q ss_pred hHHHHHHHHHHHhcCC
Q 030504 160 FEKPFLYLARKLAGST 175 (176)
Q Consensus 160 v~~~~~~l~~~i~~~~ 175 (176)
++++|++|.+.+.+.|
T Consensus 204 v~eL~~~L~~~l~~~~ 219 (339)
T PRK15494 204 IDGLLEYITSKAKISP 219 (339)
T ss_pred HHHHHHHHHHhCCCCC
Confidence 9999999999887654
No 144
>PRK04213 GTP-binding protein; Provisional
Probab=99.94 E-value=2e-26 Score=155.23 Aligned_cols=153 Identities=22% Similarity=0.198 Sum_probs=103.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCC-----------cccccccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG-----------QEKFGGLR 79 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~ 79 (176)
...++|+++|.+|+|||||++++.++.+...+.+ |+++........ .+.+||||| ++.++..+
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~--~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRP--GVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCC--ceeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 3568999999999999999999887776543344 445544433332 589999999 34555554
Q ss_pred ccccc----cccEEEEEEeCCChhhh-h---------hHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHc
Q 030504 80 DGYYI----HGQCAIIMFDVTARLTY-K---------NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK 145 (176)
Q Consensus 80 ~~~~~----~~~~~i~v~d~~~~~s~-~---------~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~ 145 (176)
..++. .++++++|+|.++.... + .-..+...+.. .+.|+++|+||+|+.... .....++.+..
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~ 157 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKIKNR-DEVLDEIAERL 157 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccccCcH-HHHHHHHHHHh
Confidence 44443 45788899988653221 0 00111222222 389999999999996543 22333444555
Q ss_pred CC---------eEEEeccCCCCChHHHHHHHHHHHhc
Q 030504 146 NL---------QYYEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 146 ~~---------~~~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
++ +++++||++| |++++++||++.+.+
T Consensus 158 ~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 158 GLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred cCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 44 5899999999 999999999998765
No 145
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.94 E-value=1e-25 Score=146.20 Aligned_cols=148 Identities=16% Similarity=0.143 Sum_probs=106.3
Q ss_pred EEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccc------cccccc--cccEE
Q 030504 18 IVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL------RDGYYI--HGQCA 89 (176)
Q Consensus 18 i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~~--~~~~~ 89 (176)
++|.+|+|||||++++.+..+.....+..+.+.....+..+ +..+.+|||||+..+... +..++. .+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLG--GKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeC--CeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 58999999999999987765443333333333333334443 357899999998776542 445554 89999
Q ss_pred EEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc-cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
++|+|++++... ..+...+... ++|+++|+||+|+.+.. .......+....+++++++|++++.|++++++++.
T Consensus 79 i~v~d~~~~~~~---~~~~~~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~ 153 (158)
T cd01879 79 VNVVDATNLERN---LYLTLQLLEL--GLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDAIA 153 (158)
T ss_pred EEEeeCCcchhH---HHHHHHHHHc--CCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHHHHH
Confidence 999999876432 2333334333 79999999999997643 33334466677789999999999999999999998
Q ss_pred HHHh
Q 030504 169 RKLA 172 (176)
Q Consensus 169 ~~i~ 172 (176)
+.+.
T Consensus 154 ~~~~ 157 (158)
T cd01879 154 ELAE 157 (158)
T ss_pred HHhc
Confidence 8753
No 146
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.94 E-value=8.5e-26 Score=161.27 Aligned_cols=158 Identities=16% Similarity=0.111 Sum_probs=111.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecC-cEEEEEEEeCCCccccc----cc---cccccccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFG----GL---RDGYYIHG 86 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~----~~---~~~~~~~~ 86 (176)
.|+++|.|+||||||++++...+.. .....++|.......+.. ....+.+||+||.-... .+ +...+.++
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~~~--va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAKPK--IADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCCCc--cCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 5999999999999999998765422 122222233332222221 34568999999964311 12 22345679
Q ss_pred cEEEEEEeCCChhhhhhHHHHHHHHhhhc---CCCCEEEEEeCCCCCcccc-CH-HHHHHHHHcCCeEEEeccCCCCChH
Q 030504 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQV-KA-KQVTFHRKKNLQYYEISAKSNYNFE 161 (176)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~liv~nK~Dl~~~~~-~~-~~~~~~~~~~~~~~~~S~~~~~~v~ 161 (176)
+++++|+|+++..+++....|...+.... .++|+++|+||+|+..... .. ....++...+++++++||++++|++
T Consensus 238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~ 317 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLD 317 (335)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHH
Confidence 99999999998777888888887776543 4789999999999975432 22 2233445567899999999999999
Q ss_pred HHHHHHHHHHhcC
Q 030504 162 KPFLYLARKLAGS 174 (176)
Q Consensus 162 ~~~~~l~~~i~~~ 174 (176)
+++++|.+.+.+.
T Consensus 318 eL~~~L~~~l~~~ 330 (335)
T PRK12299 318 ELLRALWELLEEA 330 (335)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999887653
No 147
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.94 E-value=1.8e-25 Score=143.71 Aligned_cols=150 Identities=39% Similarity=0.662 Sum_probs=119.5
Q ss_pred EEcCCCCcHHHHHHHHhcCCC-CCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEEeCC
Q 030504 18 IVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT 96 (176)
Q Consensus 18 i~G~~~~GKttl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 96 (176)
++|++|+|||||++++..... .....++. .+..............+.+||+||+..+...+..+++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999887766 34444454 5666666666667889999999999888777788889999999999999
Q ss_pred ChhhhhhHHHHH--HHHhhhcCCCCEEEEEeCCCCCccccCHH---HHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 97 ARLTYKNVPTWH--RDLCRVCENIPIVLCGNKVDVKNRQVKAK---QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 97 ~~~s~~~~~~~~--~~~~~~~~~~p~liv~nK~Dl~~~~~~~~---~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
++.+......|. ........+.|+++++||+|+........ .........++++++|+..+.|++++++||.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 999888888762 22233346899999999999976544333 2345556678999999999999999999986
No 148
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.94 E-value=1.1e-25 Score=157.56 Aligned_cols=156 Identities=15% Similarity=0.098 Sum_probs=106.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccc-c-------ccccccccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-G-------LRDGYYIHG 86 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-~-------~~~~~~~~~ 86 (176)
+|+++|.+|||||||+|++.+..... .++..+++..............+.+|||||..... . .....+.++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~-vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISI-TSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEee-cCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence 68999999999999999988765432 23333334433322222233568999999975431 1 123456889
Q ss_pred cEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccC-HHHHHHHHHcCC-eEEEeccCCCCChHHHH
Q 030504 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNL-QYYEISAKSNYNFEKPF 164 (176)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~-~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~ 164 (176)
|++++|+|+++..+.+ ..+...+.. .+.|+++|+||+|+...... .....+....+. .++++||++|.|+++++
T Consensus 81 Dvvl~VvD~~~~~~~~--~~i~~~l~~--~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~ 156 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG--EFVLTKLQN--LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLA 156 (270)
T ss_pred CEEEEEEECCCCCchH--HHHHHHHHh--cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHH
Confidence 9999999999876553 333334433 37899999999999643221 122233333443 79999999999999999
Q ss_pred HHHHHHHhcCC
Q 030504 165 LYLARKLAGST 175 (176)
Q Consensus 165 ~~l~~~i~~~~ 175 (176)
+++.+.+.+.|
T Consensus 157 ~~l~~~l~~~~ 167 (270)
T TIGR00436 157 AFIEVHLPEGP 167 (270)
T ss_pred HHHHHhCCCCC
Confidence 99999887654
No 149
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.94 E-value=1.7e-25 Score=170.37 Aligned_cols=158 Identities=15% Similarity=0.158 Sum_probs=118.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCC-------CCCccc------cceeEEEeEEEEEe-----cCcEEEEEEEeCCCccc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGE-------FEKKYE------PTIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEK 74 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~-------~~~~~~------~~~~~~~~~~~~~~-----~~~~~~~~~~D~~g~~~ 74 (176)
..||+++|+.++|||||+++++... +...+. ...|.+.....+.. ++..+.+.+|||||++.
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4689999999999999999988631 112222 22355555444333 45668999999999999
Q ss_pred cccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCC---eEEE
Q 030504 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYE 151 (176)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~ 151 (176)
+...+..++..+|++++|+|++++.+.+....|..... .+.|+++|+||+|+..........++....++ .+++
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~~~~vi~ 159 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE---NDLEIIPVINKIDLPSADPERVKKEIEEVIGLDASEAIL 159 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---cCCCEEEEEECcCCCccCHHHHHHHHHHHhCCCcceEEE
Confidence 99888999999999999999999877776666654432 37899999999999754322222344444555 4899
Q ss_pred eccCCCCChHHHHHHHHHHHhc
Q 030504 152 ISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 152 ~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
+||++|.|++++|+++++.+..
T Consensus 160 vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 160 ASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred eeccCCCCHHHHHHHHHHhCCC
Confidence 9999999999999999987754
No 150
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.93 E-value=4.6e-25 Score=162.80 Aligned_cols=153 Identities=23% Similarity=0.241 Sum_probs=110.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccc--------cccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGY 82 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~ 82 (176)
.+.++|+++|.+|+|||||+|+++...... ..+..|++.......+...+..+.+|||||...+... ...+
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~ai-vs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAI-VSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcc-cCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 356899999999999999999988654311 1222333444433333334566799999998655432 2356
Q ss_pred cccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChHH
Q 030504 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
++.+|++++|+|++++.+++.. |+..+.. .+.|+++|+||+|+... +...+.+..+.+++++|+++ .|+++
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~--~~~piIlV~NK~Dl~~~----~~~~~~~~~~~~~~~vSak~-~gI~~ 350 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK--SKKPFILVLNKIDLKIN----SLEFFVSSKVLNSSNLSAKQ-LKIKA 350 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH--HHHHHhh--CCCCEEEEEECccCCCc----chhhhhhhcCCceEEEEEec-CCHHH
Confidence 7899999999999988776654 5555443 37899999999999654 22344566778899999998 69999
Q ss_pred HHHHHHHHHhc
Q 030504 163 PFLYLARKLAG 173 (176)
Q Consensus 163 ~~~~l~~~i~~ 173 (176)
+|+.+.+.+.+
T Consensus 351 ~~~~L~~~i~~ 361 (442)
T TIGR00450 351 LVDLLTQKINA 361 (442)
T ss_pred HHHHHHHHHHH
Confidence 99998887754
No 151
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.93 E-value=2.9e-25 Score=166.06 Aligned_cols=155 Identities=22% Similarity=0.231 Sum_probs=107.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccc--------ccccccccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--------FGGLRDGYY 83 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~ 83 (176)
...+|+|+|.+|||||||+|+++.+... ...++.|++...........+..+.+|||||.+. +...+..++
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~-~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREA-VVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcc-cccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 3468999999999999999998876542 2233445554444443333445688999999763 222345567
Q ss_pred ccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCC-eEEEeccCCCCChHH
Q 030504 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEK 162 (176)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~ 162 (176)
+.+|++++|+|++++.+... ..+...+.. .++|+++|+||+|+..... +...+. ..++ ..+++||++|.|+++
T Consensus 116 ~~aD~il~VvD~~~~~s~~~-~~i~~~l~~--~~~piilV~NK~Dl~~~~~--~~~~~~-~~g~~~~~~iSA~~g~gi~e 189 (472)
T PRK03003 116 RTADAVLFVVDATVGATATD-EAVARVLRR--SGKPVILAANKVDDERGEA--DAAALW-SLGLGEPHPVSALHGRGVGD 189 (472)
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECccCCccch--hhHHHH-hcCCCCeEEEEcCCCCCcHH
Confidence 89999999999998755432 233334433 3899999999999965321 112221 2333 357999999999999
Q ss_pred HHHHHHHHHhc
Q 030504 163 PFLYLARKLAG 173 (176)
Q Consensus 163 ~~~~l~~~i~~ 173 (176)
+|+++++.+.+
T Consensus 190 L~~~i~~~l~~ 200 (472)
T PRK03003 190 LLDAVLAALPE 200 (472)
T ss_pred HHHHHHhhccc
Confidence 99999998765
No 152
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.2e-26 Score=144.46 Aligned_cols=160 Identities=24% Similarity=0.384 Sum_probs=127.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhc-------CCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccccccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLT-------GEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYY 83 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~ 83 (176)
+..+.++|+|+.++|||||+.+... +--+....+|.|.....+.+ ....+.+||.+|++..+++|..||
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v----~~~~l~fwdlgGQe~lrSlw~~yY 90 (197)
T KOG0076|consen 15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV----CNAPLSFWDLGGQESLRSLWKKYY 90 (197)
T ss_pred hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee----ccceeEEEEcCChHHHHHHHHHHH
Confidence 4678999999999999999998432 11123455666655555544 356789999999999999999999
Q ss_pred ccccEEEEEEeCCChhhhhhHHHHHHHHhh--hcCCCCEEEEEeCCCCCccccCHHHHHHHH---H---cCCeEEEeccC
Q 030504 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKNRQVKAKQVTFHR---K---KNLQYYEISAK 155 (176)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~--~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~---~---~~~~~~~~S~~ 155 (176)
..++++|+++|+++++.|+.....++.+.. ...+.|+++.+||.|+.+.....+....+. . ..+++..+||+
T Consensus 91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal 170 (197)
T KOG0076|consen 91 WLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSAL 170 (197)
T ss_pred HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhh
Confidence 999999999999999988887766555533 347999999999999998777666554333 2 34789999999
Q ss_pred CCCChHHHHHHHHHHHhcC
Q 030504 156 SNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 156 ~~~~v~~~~~~l~~~i~~~ 174 (176)
+|+||++...|+++.+..+
T Consensus 171 ~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 171 TGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hcccHHHHHHHHHHHHhhc
Confidence 9999999999999998765
No 153
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.93 E-value=3.9e-25 Score=136.50 Aligned_cols=165 Identities=24% Similarity=0.397 Sum_probs=144.7
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
.+.-.+||.++|.+..|||||+-.+..+.+.+.+..+.|+....+++...+..+.|.+||.+|++++..+.+..-..+-+
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva 95 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA 95 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence 34468999999999999999999999999988899999999999999999999999999999999999988888889999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhhcC-CCCEEEEEeCCCCCcc-------ccCHHHHHHHHHcCCeEEEeccCCCCCh
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNR-------QVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~liv~nK~Dl~~~-------~~~~~~~~~~~~~~~~~~~~S~~~~~~v 160 (176)
++++||++.++++..+..|+++....+. .+| ++|+||-|+.-+ ....+.+.+++..+.++|.||+....|+
T Consensus 96 IlFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv 174 (205)
T KOG1673|consen 96 ILFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINV 174 (205)
T ss_pred EEEEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccH
Confidence 9999999999999999999999887753 455 456999996432 2334566888889999999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 030504 161 EKPFLYLARKLAGS 174 (176)
Q Consensus 161 ~~~~~~l~~~i~~~ 174 (176)
+.+|+.+..++..-
T Consensus 175 ~KIFK~vlAklFnL 188 (205)
T KOG1673|consen 175 QKIFKIVLAKLFNL 188 (205)
T ss_pred HHHHHHHHHHHhCC
Confidence 99999998887653
No 154
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.93 E-value=3.1e-25 Score=143.69 Aligned_cols=148 Identities=21% Similarity=0.150 Sum_probs=101.2
Q ss_pred EEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc--------ccccccccccE
Q 030504 17 VIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--------LRDGYYIHGQC 88 (176)
Q Consensus 17 ~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~~~~ 88 (176)
+++|.+|+|||||++++....... .....+.+..............+.+|||||+..+.. .....+.++|+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ 79 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAI-VEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADV 79 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEe-ecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCE
Confidence 479999999999999988664211 111222333333333333456789999999887544 33455778999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCC-eEEEeccCCCCChHHHHHHH
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~~~l 167 (176)
+++|+|+.++.+.... .+...+... +.|+++|+||+|+...... .......+. .++++|++++.|++++|+++
T Consensus 80 ii~v~d~~~~~~~~~~-~~~~~~~~~--~~piiiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 153 (157)
T cd01894 80 ILFVVDGREGLTPADE-EIAKYLRKS--KKPVILVVNKVDNIKEEDE---AAEFYSLGFGEPIPISAEHGRGIGDLLDAI 153 (157)
T ss_pred EEEEEeccccCCccHH-HHHHHHHhc--CCCEEEEEECcccCChHHH---HHHHHhcCCCCeEEEecccCCCHHHHHHHH
Confidence 9999999876543332 222333333 7999999999999764432 233334555 78999999999999999999
Q ss_pred HHHH
Q 030504 168 ARKL 171 (176)
Q Consensus 168 ~~~i 171 (176)
++.+
T Consensus 154 ~~~~ 157 (157)
T cd01894 154 LELL 157 (157)
T ss_pred HhhC
Confidence 8753
No 155
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.93 E-value=8.6e-25 Score=141.56 Aligned_cols=147 Identities=18% Similarity=0.154 Sum_probs=104.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccc--------ccccccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYYIH 85 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~~~ 85 (176)
++|+++|++|+|||||++++..+.... ..+..+.+..............+.+|||||...+... ....+.+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~ 80 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAI-VSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEE 80 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEe-ccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhh
Confidence 589999999999999999987665321 1122232333222233334567899999997655432 2245678
Q ss_pred ccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChHHHHH
Q 030504 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (176)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 165 (176)
+|++++|+|++++.+......+.. ..+.|+++|+||.|+...... .....+.+++++||+++.|++++++
T Consensus 81 ~~~~v~v~d~~~~~~~~~~~~~~~-----~~~~~vi~v~nK~D~~~~~~~-----~~~~~~~~~~~~Sa~~~~~v~~l~~ 150 (157)
T cd04164 81 ADLVLFVIDASRGLDEEDLEILEL-----PADKPIIVVLNKSDLLPDSEL-----LSLLAGKPIIAISAKTGEGLDELKE 150 (157)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHh-----hcCCCEEEEEEchhcCCcccc-----ccccCCCceEEEECCCCCCHHHHHH
Confidence 999999999998766555543322 348999999999999764433 3444567899999999999999999
Q ss_pred HHHHHH
Q 030504 166 YLARKL 171 (176)
Q Consensus 166 ~l~~~i 171 (176)
+|...+
T Consensus 151 ~l~~~~ 156 (157)
T cd04164 151 ALLELA 156 (157)
T ss_pred HHHHhh
Confidence 998754
No 156
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.93 E-value=8.1e-25 Score=146.30 Aligned_cols=156 Identities=15% Similarity=0.069 Sum_probs=101.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC----CCCCcc-----ccceeEEEeEEEEE----------ecCcEEEEEEEeCCCccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTG----EFEKKY-----EPTIGVEVHPLDFF----------TNCGKIRFYCWDTAGQEK 74 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~----~~~~~~-----~~~~~~~~~~~~~~----------~~~~~~~~~~~D~~g~~~ 74 (176)
+||+++|++++|||||++++... .+.... ..|.+.......+. .....+.+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999998752 111111 12333333333322 123367899999999865
Q ss_pred cccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccC----HHHHHHHH-------
Q 030504 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK----AKQVTFHR------- 143 (176)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~----~~~~~~~~------- 143 (176)
+..........+|++++|+|+++....+....+. .. .. .+.|+++++||+|+...... .+..+.+.
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~-~~-~~-~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV-IG-EI-LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTR 157 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH-HH-HH-cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4333333356679999999998754433332222 11 11 26799999999998743221 11111111
Q ss_pred HcCCeEEEeccCCCCChHHHHHHHHHHHh
Q 030504 144 KKNLQYYEISAKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 144 ~~~~~~~~~S~~~~~~v~~~~~~l~~~i~ 172 (176)
..+++++++||++|.|++++++++..+|.
T Consensus 158 ~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 158 FKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred cCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 23678999999999999999999999876
No 157
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.93 E-value=1.6e-24 Score=154.62 Aligned_cols=157 Identities=15% Similarity=0.132 Sum_probs=106.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccc----ccccc---ccccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG----GLRDG---YYIHG 86 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----~~~~~---~~~~~ 86 (176)
-.|+++|.++||||||++++...+......+..........+.++ ....+.+||+||..... .+... .+.++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~-~~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVD-DGRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeC-CceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 369999999999999999987665321111111111111122222 23678999999974322 22222 34579
Q ss_pred cEEEEEEeCCCh---hhhhhHHHHHHHHhhh---cCCCCEEEEEeCCCCCccccCHH-HHHHHHHcCCeEEEeccCCCCC
Q 030504 87 QCAIIMFDVTAR---LTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYN 159 (176)
Q Consensus 87 ~~~i~v~d~~~~---~s~~~~~~~~~~~~~~---~~~~p~liv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~S~~~~~~ 159 (176)
+++++|+|+++. ..++.+..|...+... ..++|+++|+||+|+.......+ ...+.+..+.+++++||++++|
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg~G 316 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALGKPVFPISALTGEG 316 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCcEEEEEccCCcC
Confidence 999999999976 5666666666666543 24789999999999976433222 2345556678999999999999
Q ss_pred hHHHHHHHHHHH
Q 030504 160 FEKPFLYLARKL 171 (176)
Q Consensus 160 v~~~~~~l~~~i 171 (176)
++++++++.+.+
T Consensus 317 I~eL~~~I~~~l 328 (329)
T TIGR02729 317 LDELLYALAELL 328 (329)
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 158
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.93 E-value=1.6e-24 Score=144.40 Aligned_cols=155 Identities=19% Similarity=0.123 Sum_probs=109.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccc--------------eeEEEeEEEEEecCcEEEEEEEeCCCccccccccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPT--------------IGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 80 (176)
+|+++|.+|+|||||++++...........+ .+.+........+.....+.+|||||+..+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 5899999999999999998776554332111 12222222223333456899999999988888888
Q ss_pred cccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc----CHHHHHHHHH------------
Q 030504 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRK------------ 144 (176)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~----~~~~~~~~~~------------ 144 (176)
.++..+|++++|+|++++...... .++..+.. .+.|+++++||+|+..... .....+..+.
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~--~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTR-EHLRIARE--GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTR 157 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHH-HHHHHHHH--CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcc
Confidence 888999999999999876543322 23333333 4899999999999975222 1122233322
Q ss_pred --cCCeEEEeccCCCCChHHHHHHHHHHHh
Q 030504 145 --KNLQYYEISAKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 145 --~~~~~~~~S~~~~~~v~~~~~~l~~~i~ 172 (176)
...+++++||++|.|+++++.++.+.+.
T Consensus 158 ~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 158 NGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred cCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 3578999999999999999999999874
No 159
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.93 E-value=4.7e-25 Score=145.49 Aligned_cols=151 Identities=14% Similarity=0.104 Sum_probs=102.5
Q ss_pred EEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCc-EEEEEEEeCCCccc----ccccc---ccccccccEE
Q 030504 18 IVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEK----FGGLR---DGYYIHGQCA 89 (176)
Q Consensus 18 i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~----~~~~~---~~~~~~~~~~ 89 (176)
++|++|||||||++++.+...... ...+.+........... ...+.+|||||... .+..+ ...+..+|++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVA--NYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCcccc--CCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 589999999999999887654111 11111222111112223 56789999999732 22222 2346789999
Q ss_pred EEEEeCCCh------hhhhhHHHHHHHHhhhc--------CCCCEEEEEeCCCCCccccCHHH--HHHHHHcCCeEEEec
Q 030504 90 IIMFDVTAR------LTYKNVPTWHRDLCRVC--------ENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEIS 153 (176)
Q Consensus 90 i~v~d~~~~------~s~~~~~~~~~~~~~~~--------~~~p~liv~nK~Dl~~~~~~~~~--~~~~~~~~~~~~~~S 153 (176)
++|+|++++ .+++....|...+.... .+.|+++|+||+|+......... .......+..++++|
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPIS 158 (176)
T ss_pred EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEe
Confidence 999999987 46666666666665432 37999999999999764433332 233444567899999
Q ss_pred cCCCCChHHHHHHHHHH
Q 030504 154 AKSNYNFEKPFLYLARK 170 (176)
Q Consensus 154 ~~~~~~v~~~~~~l~~~ 170 (176)
++++.|+++++++++..
T Consensus 159 a~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 159 AKTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhhcCHHHHHHHHHhh
Confidence 99999999999998764
No 160
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.93 E-value=6.5e-25 Score=136.05 Aligned_cols=114 Identities=28% Similarity=0.536 Sum_probs=87.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC--CccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFE--KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
||+|+|.+|||||||++++..+.+. ..+.++.+.+..............+.+||++|++.+...+...+..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999988776 12223333334433445555666699999999998888888889999999999
Q ss_pred EeCCChhhhhhHHH---HHHHHhhhcCCCCEEEEEeCCC
Q 030504 93 FDVTARLTYKNVPT---WHRDLCRVCENIPIVLCGNKVD 128 (176)
Q Consensus 93 ~d~~~~~s~~~~~~---~~~~~~~~~~~~p~liv~nK~D 128 (176)
||++++.+++.+.. |+..+....++.|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 99999999988754 5666665567899999999998
No 161
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.93 E-value=8.3e-25 Score=162.23 Aligned_cols=150 Identities=18% Similarity=0.194 Sum_probs=107.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccc--------ccccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYY 83 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~ 83 (176)
..++|+++|.+|+|||||+|+++...... ..+..|++.......+...+..+.+|||||.+.+... ...++
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~-v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAI-VTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcc-cCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 45899999999999999999988665311 1222333443333333334567899999998754332 22357
Q ss_pred ccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChHHH
Q 030504 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
..+|++++|+|++++.+++....|.. ..+.|+++|+||+|+....... ...+.+++++|+++|.|++++
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~l~~-----~~~~piiiV~NK~DL~~~~~~~------~~~~~~~i~iSAktg~GI~~L 361 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEILEE-----LKDKPVIVVLNKADLTGEIDLE------EENGKPVIRISAKTGEGIDEL 361 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHHHHh-----cCCCCcEEEEEhhhccccchhh------hccCCceEEEEeeCCCCHHHH
Confidence 88999999999998877665443332 3588999999999997543221 344678999999999999999
Q ss_pred HHHHHHHHhc
Q 030504 164 FLYLARKLAG 173 (176)
Q Consensus 164 ~~~l~~~i~~ 173 (176)
++++.+.+.+
T Consensus 362 ~~~L~~~l~~ 371 (449)
T PRK05291 362 REAIKELAFG 371 (449)
T ss_pred HHHHHHHHhh
Confidence 9999987753
No 162
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.93 E-value=2.4e-24 Score=155.03 Aligned_cols=153 Identities=14% Similarity=0.087 Sum_probs=103.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccc---------cccccccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK---------FGGLRDGY 82 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~ 82 (176)
..++|+++|.+|+|||||+|++.+........+....+.....+..+ .+..+.+|||+|..+ +.... ..
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~-~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLP-DGGEVLLTDTVGFIRDLPHELVAAFRATL-EE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeC-CCceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence 34899999999999999999988765422111111122223333343 235789999999721 22211 23
Q ss_pred cccccEEEEEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChH
Q 030504 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (176)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~ 161 (176)
+.++|++++|+|++++.+.+....|...+.... .+.|+++|+||+|+.+... . ........+++++||++|.|++
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~---v-~~~~~~~~~~i~iSAktg~GI~ 341 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR---I-ERLEEGYPEAVFVSAKTGEGLD 341 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh---H-HHHHhCCCCEEEEEccCCCCHH
Confidence 678999999999999887776655555444432 4789999999999965321 1 1111223568999999999999
Q ss_pred HHHHHHHHH
Q 030504 162 KPFLYLARK 170 (176)
Q Consensus 162 ~~~~~l~~~ 170 (176)
+++++|.+.
T Consensus 342 eL~~~I~~~ 350 (351)
T TIGR03156 342 LLLEAIAER 350 (351)
T ss_pred HHHHHHHhh
Confidence 999998764
No 163
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.92 E-value=1.3e-24 Score=138.37 Aligned_cols=147 Identities=16% Similarity=0.193 Sum_probs=100.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccc------ccccccc--cc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG------GLRDGYY--IH 85 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~--~~ 85 (176)
++|+++|.|++|||||.|++.+.+... ....|.|.......+......+.++|+||.-... .....++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v--~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKV--GNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEE--EESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCcee--cCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 589999999999999999977655332 3334444554444333334678899999943222 2223333 57
Q ss_pred ccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc-cccCHHHHHHHHHcCCeEEEeccCCCCChHHHH
Q 030504 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~ 164 (176)
.|++++|+|+++.+ .-..+..++.+. +.|+++++||.|... .....+...+.+..+++++.+||++++|+++++
T Consensus 79 ~D~ii~VvDa~~l~---r~l~l~~ql~e~--g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~ 153 (156)
T PF02421_consen 79 PDLIIVVVDATNLE---RNLYLTLQLLEL--GIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELK 153 (156)
T ss_dssp SSEEEEEEEGGGHH---HHHHHHHHHHHT--TSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHH
T ss_pred CCEEEEECCCCCHH---HHHHHHHHHHHc--CCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHH
Confidence 89999999998753 222344455554 899999999999875 344456778888899999999999999999998
Q ss_pred HHH
Q 030504 165 LYL 167 (176)
Q Consensus 165 ~~l 167 (176)
+.+
T Consensus 154 ~~I 156 (156)
T PF02421_consen 154 DAI 156 (156)
T ss_dssp HHH
T ss_pred hhC
Confidence 764
No 164
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.92 E-value=2.5e-24 Score=161.06 Aligned_cols=156 Identities=17% Similarity=0.167 Sum_probs=106.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeE--EEEEecCcEEEEEEEeCCCcccc----------ccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHP--LDFFTNCGKIRFYCWDTAGQEKF----------GGL 78 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~g~~~~----------~~~ 78 (176)
...++|+++|.+++|||||+++++...... ..+..|++... ..+..++ ..+.+|||||..+. ...
T Consensus 209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~-~s~~~gtT~d~~~~~~~~~~--~~~~l~DTaG~~~~~~~~~~~e~~~~~ 285 (472)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKLAGEERSV-VDDVAGTTVDPVDSLIELGG--KTWRFVDTAGLRRRVKQASGHEYYASL 285 (472)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCccc-ccCCCCccCCcceEEEEECC--EEEEEEECCCccccccccchHHHHHHH
Confidence 356899999999999999999988765421 12333334333 3333443 45679999996321 111
Q ss_pred -cccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCH----HHHH-HHHHcCCeEEEe
Q 030504 79 -RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----KQVT-FHRKKNLQYYEI 152 (176)
Q Consensus 79 -~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~----~~~~-~~~~~~~~~~~~ 152 (176)
...+++.+|++++|+|++++.+++... ++..+.. .+.|+++|+||+|+....... +... +.....++++++
T Consensus 286 ~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~--~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 362 (472)
T PRK03003 286 RTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE--AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNI 362 (472)
T ss_pred HHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEE
Confidence 123467899999999999987777663 3344433 389999999999997532111 1111 122234789999
Q ss_pred ccCCCCChHHHHHHHHHHHh
Q 030504 153 SAKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 153 S~~~~~~v~~~~~~l~~~i~ 172 (176)
||++|.|++++|..+.+.+.
T Consensus 363 SAk~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 363 SAKTGRAVDKLVPALETALE 382 (472)
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999988764
No 165
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.92 E-value=3.5e-24 Score=144.22 Aligned_cols=113 Identities=16% Similarity=0.159 Sum_probs=80.0
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccC----HH
Q 030504 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK----AK 137 (176)
Q Consensus 62 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~----~~ 137 (176)
..+.+|||||++.+...+...+..+|++++|+|++++.........+..+... ...|+++|+||.|+.+.... .+
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~-~~~~iiivvNK~Dl~~~~~~~~~~~~ 161 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM-GLKHIIIVQNKIDLVKEEQALENYEQ 161 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc-CCCcEEEEEEchhccCHHHHHHHHHH
Confidence 67899999999988777777778899999999999742111112222222222 23579999999999753221 12
Q ss_pred HHHHHHH---cCCeEEEeccCCCCChHHHHHHHHHHHhcCC
Q 030504 138 QVTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLAGST 175 (176)
Q Consensus 138 ~~~~~~~---~~~~~~~~S~~~~~~v~~~~~~l~~~i~~~~ 175 (176)
..+++.. .+++++++||++|+|++++|+++.+.+.+.|
T Consensus 162 i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~~ 202 (203)
T cd01888 162 IKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTPP 202 (203)
T ss_pred HHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCCC
Confidence 2233333 2578999999999999999999999888755
No 166
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.92 E-value=9.8e-24 Score=160.10 Aligned_cols=157 Identities=13% Similarity=0.138 Sum_probs=110.0
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
..++..+|+++|++++|||||++++..+++.....+....+.....+...+. ..+.+||||||+.|..++...+..+|+
T Consensus 83 ~~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDi 161 (587)
T TIGR00487 83 LVERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDI 161 (587)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCE
Confidence 3456679999999999999999998887765543333222222233333222 278999999999999988888999999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHc---------CCeEEEeccCCCCC
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK---------NLQYYEISAKSNYN 159 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~---------~~~~~~~S~~~~~~ 159 (176)
+++|+|+++....+....+ ..... .+.|+++++||+|+.+... .+....+... ..+++++||++|+|
T Consensus 162 aILVVda~dgv~~qT~e~i-~~~~~--~~vPiIVviNKiDl~~~~~-e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeG 237 (587)
T TIGR00487 162 VVLVVAADDGVMPQTIEAI-SHAKA--ANVPIIVAINKIDKPEANP-DRVKQELSEYGLVPEDWGGDTIFVPVSALTGDG 237 (587)
T ss_pred EEEEEECCCCCCHhHHHHH-HHHHH--cCCCEEEEEECcccccCCH-HHHHHHHHHhhhhHHhcCCCceEEEEECCCCCC
Confidence 9999999875433333222 22222 3889999999999965322 1122222222 25799999999999
Q ss_pred hHHHHHHHHHH
Q 030504 160 FEKPFLYLARK 170 (176)
Q Consensus 160 v~~~~~~l~~~ 170 (176)
++++|+++...
T Consensus 238 I~eLl~~I~~~ 248 (587)
T TIGR00487 238 IDELLDMILLQ 248 (587)
T ss_pred hHHHHHhhhhh
Confidence 99999998753
No 167
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.92 E-value=1.2e-23 Score=129.69 Aligned_cols=163 Identities=21% Similarity=0.343 Sum_probs=130.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCC--ccccceeEEEeEEEEEecCcEEEEEEEeCCCcccc-ccccccccccccE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEK--KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-GGLRDGYYIHGQC 88 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-~~~~~~~~~~~~~ 88 (176)
..-|++++|..++|||+++.+++.|+... ++.||+...+....-+..+..-.+.++||.|...+ ..+-++|+.-+|+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 35689999999999999999999888754 34556654444333334445557999999998877 5788899999999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCc-cccC-HHHHHHHHHcCCeEEEeccCCCCChHHHH
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~~~S~~~~~~v~~~~ 164 (176)
+++||+..+++||+.+..+...+.+.. ...|+++++||+|+.. +... .-+..|+++..+.++++++.+...+-|.|
T Consensus 88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf 167 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPF 167 (198)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHH
Confidence 999999999999998876666665432 5789999999999963 3333 34668899999999999999999999999
Q ss_pred HHHHHHHhcC
Q 030504 165 LYLARKLAGS 174 (176)
Q Consensus 165 ~~l~~~i~~~ 174 (176)
-+++..+.+.
T Consensus 168 ~~l~~rl~~p 177 (198)
T KOG3883|consen 168 TYLASRLHQP 177 (198)
T ss_pred HHHHHhccCC
Confidence 9999987654
No 168
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.92 E-value=1.5e-24 Score=131.88 Aligned_cols=159 Identities=20% Similarity=0.310 Sum_probs=127.9
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEE
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (176)
..+++||+++|..++|||||+.+ +.+..+....||.|+....... ...+.+.+||.+|+...+..|..||.+.|++
T Consensus 14 t~rEirilllGldnAGKTT~LKq-L~sED~~hltpT~GFn~k~v~~---~g~f~LnvwDiGGqr~IRpyWsNYyenvd~l 89 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQ-LKSEDPRHLTPTNGFNTKKVEY---DGTFHLNVWDIGGQRGIRPYWSNYYENVDGL 89 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHH-HccCChhhccccCCcceEEEee---cCcEEEEEEecCCccccchhhhhhhhccceE
Confidence 36789999999999999999998 7777777778888866555443 2458999999999999999999999999999
Q ss_pred EEEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHH-----HHHHHcCCeEEEeccCCCCChHH
Q 030504 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~-----~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
|||+|.+|...|+++...+-.+.+. ....|+++.+||.|+......++.. ...+...+.+-+||+++++|+.+
T Consensus 90 IyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~d 169 (185)
T KOG0074|consen 90 IYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTD 169 (185)
T ss_pred EEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccC
Confidence 9999999998888777555555433 3589999999999987654443322 23344567889999999999999
Q ss_pred HHHHHHHHHh
Q 030504 163 PFLYLARKLA 172 (176)
Q Consensus 163 ~~~~l~~~i~ 172 (176)
-..|+++...
T Consensus 170 g~~wv~sn~~ 179 (185)
T KOG0074|consen 170 GSDWVQSNPE 179 (185)
T ss_pred cchhhhcCCC
Confidence 9999987654
No 169
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.92 E-value=8.5e-24 Score=157.24 Aligned_cols=158 Identities=18% Similarity=0.178 Sum_probs=108.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccc-----------
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR----------- 79 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~----------- 79 (176)
...++|+++|.+++|||||+++++...... ..+..|++...........+..+.+|||||..+.....
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~-~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVI-VSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeee-cCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHH
Confidence 456899999999999999999987654321 12334445544443333334478999999976544322
Q ss_pred ccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCC-ccccCHHHHHHH-HH----cCCeEEEec
Q 030504 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK-NRQVKAKQVTFH-RK----KNLQYYEIS 153 (176)
Q Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~-~~~~~~~~~~~~-~~----~~~~~~~~S 153 (176)
..+++.+|++++|+|++++.+.+... ++..+... +.|+++|+||+|+. +.....+..... .. ..++++++|
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~~--~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~S 325 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLR-IAGLILEA--GKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFIS 325 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHHc--CCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEe
Confidence 23578899999999999887665543 33333333 79999999999997 222111221111 11 247899999
Q ss_pred cCCCCChHHHHHHHHHHHh
Q 030504 154 AKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 154 ~~~~~~v~~~~~~l~~~i~ 172 (176)
|++|.|++++|+++.+.+.
T Consensus 326 A~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 326 ALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999988654
No 170
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.92 E-value=1.2e-23 Score=153.80 Aligned_cols=156 Identities=15% Similarity=0.156 Sum_probs=106.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCc-EEEEEEEeCCCccccc----cccccc---cccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFG----GLRDGY---YIHG 86 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~----~~~~~~---~~~~ 86 (176)
.|+++|.++||||||++++...+... ....+++.......+... ...+.+||+||..... .+...+ +.++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kI--a~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKI--ANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCcc--ccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 69999999999999999987655321 111222222222222112 4568999999964321 122223 4568
Q ss_pred cEEEEEEeCCCh---hhhhhHHHHHHHHhhhc---CCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCCh
Q 030504 87 QCAIIMFDVTAR---LTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (176)
Q Consensus 87 ~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~---~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v 160 (176)
+++++|+|+++. ..++....|...+.... .++|.++|+||+|+... ......+.+..+.+++++||++++|+
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~e~l~~l~~~l~~~i~~iSA~tgeGI 315 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--EENLEEFKEKLGPKVFPISALTGQGL 315 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--HHHHHHHHHHhCCcEEEEeCCCCCCH
Confidence 999999999864 45566666666665432 47899999999998432 22334555566688999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 030504 161 EKPFLYLARKLAGS 174 (176)
Q Consensus 161 ~~~~~~l~~~i~~~ 174 (176)
+++++++.+.+.+.
T Consensus 316 ~eL~~~L~~~l~~~ 329 (424)
T PRK12297 316 DELLYAVAELLEET 329 (424)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999887654
No 171
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=6e-25 Score=133.97 Aligned_cols=158 Identities=22% Similarity=0.346 Sum_probs=127.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
.+.+|+++|.-|+||||+..++.-|+... ..|++|+....... +..++++||.+|+-..+..|+.|+.+.+++||
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvt-tkPtigfnve~v~y----KNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVT-TKPTIGFNVETVPY----KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccc-cCCCCCcCcccccc----ccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 77899999999999999999977777654 46777765555443 88899999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHH-----HHHHHcCCeEEEeccCCCCChHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~-----~~~~~~~~~~~~~S~~~~~~v~~~~ 164 (176)
|+|.+|.+..--....+..+.+. .....+++++||.|...+....+.. ...+...+.+|++||.+|+|+++++
T Consensus 92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~ 171 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAM 171 (182)
T ss_pred EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHH
Confidence 99999988766555544444332 3577789999999998765544432 3345556899999999999999999
Q ss_pred HHHHHHHhcC
Q 030504 165 LYLARKLAGS 174 (176)
Q Consensus 165 ~~l~~~i~~~ 174 (176)
+|+.+.+.++
T Consensus 172 DWL~~~l~~~ 181 (182)
T KOG0072|consen 172 DWLQRPLKSR 181 (182)
T ss_pred HHHHHHHhcc
Confidence 9999988765
No 172
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.92 E-value=3.5e-24 Score=138.73 Aligned_cols=140 Identities=17% Similarity=0.111 Sum_probs=96.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccc----ccccccccEEE
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR----DGYYIHGQCAI 90 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~----~~~~~~~~~~i 90 (176)
+|+++|.+++|||||++++. |.+... ..+.++. .... .+|||||.......+ ...+.++|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~-~~~~~~-~~~~~v~-------~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQ-GNYTLA-RKTQAVE-------FNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHc-CCCccC-ccceEEE-------ECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 79999999999999999954 544221 2222221 1112 269999973222111 22367999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCC--eEEEeccCCCCChHHHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL--QYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~S~~~~~~v~~~~~~l~ 168 (176)
+|+|+++..++.. .|+..+ ..+.|+++++||+|+.... .....+++...++ +++++||++++|++++|+++.
T Consensus 70 ~v~d~~~~~s~~~--~~~~~~---~~~~~ii~v~nK~Dl~~~~-~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~ 143 (158)
T PRK15467 70 YVHGANDPESRLP--AGLLDI---GVSKRQIAVISKTDMPDAD-VAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLA 143 (158)
T ss_pred EEEeCCCcccccC--HHHHhc---cCCCCeEEEEEccccCccc-HHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHH
Confidence 9999998876533 233332 2478999999999996532 2334566667764 899999999999999999998
Q ss_pred HHHhc
Q 030504 169 RKLAG 173 (176)
Q Consensus 169 ~~i~~ 173 (176)
+.+.+
T Consensus 144 ~~~~~ 148 (158)
T PRK15467 144 SLTKQ 148 (158)
T ss_pred Hhchh
Confidence 87643
No 173
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.92 E-value=1.1e-23 Score=141.33 Aligned_cols=159 Identities=14% Similarity=0.087 Sum_probs=107.4
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccc----------cccc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----------FGGL 78 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~ 78 (176)
......+|+++|.+|+|||||++++..+.+...+.++.|.+........ ...+.+|||||... +...
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~ 96 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKL 96 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence 4456789999999999999999998877666566666665544333322 35789999999532 2222
Q ss_pred cccccc---cccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHH----HHHHHHHcCCeEEE
Q 030504 79 RDGYYI---HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK----QVTFHRKKNLQYYE 151 (176)
Q Consensus 79 ~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~ 151 (176)
...++. ..+++++|+|.+++.+.... .....+.. .+.|+++++||+|+......+. ...........+++
T Consensus 97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ 173 (196)
T PRK00454 97 IEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE--YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVIL 173 (196)
T ss_pred HHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH--cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEE
Confidence 233333 34688889998875433221 11222222 3789999999999865332221 22333334688999
Q ss_pred eccCCCCChHHHHHHHHHHHhc
Q 030504 152 ISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 152 ~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
+|++++.|+++++++|.+.+.+
T Consensus 174 ~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 174 FSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred EEcCCCCCHHHHHHHHHHHhcC
Confidence 9999999999999999987765
No 174
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.91 E-value=3.4e-23 Score=135.21 Aligned_cols=155 Identities=15% Similarity=0.118 Sum_probs=102.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc--------cccccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--------LRDGYY 83 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~ 83 (176)
...+|+++|++|+|||||++++++...... .+....+..............+.+|||||...... .....+
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIV-SPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL 80 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEec-cCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence 357899999999999999999776543211 11112222222223334456789999999764332 223457
Q ss_pred ccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc-cccCHHHH-HHHHHc-CCeEEEeccCCCCCh
Q 030504 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKK-NLQYYEISAKSNYNF 160 (176)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~-~~~~~~~~-~~~~~~-~~~~~~~S~~~~~~v 160 (176)
..+|++++|+|++++.+ +....+...+... +.|+++|+||+|+.. .....+.. .+.... ..+++++|++++.|+
T Consensus 81 ~~~d~i~~v~d~~~~~~-~~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 157 (168)
T cd04163 81 KDVDLVLFVVDASEPIG-EGDEFILELLKKS--KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV 157 (168)
T ss_pred HhCCEEEEEEECCCccC-chHHHHHHHHHHh--CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence 78999999999998721 1122233333333 689999999999974 33333333 333333 368999999999999
Q ss_pred HHHHHHHHHH
Q 030504 161 EKPFLYLARK 170 (176)
Q Consensus 161 ~~~~~~l~~~ 170 (176)
++++++|.+.
T Consensus 158 ~~l~~~l~~~ 167 (168)
T cd04163 158 DELLEEIVKY 167 (168)
T ss_pred HHHHHHHHhh
Confidence 9999999765
No 175
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.91 E-value=1.9e-23 Score=140.52 Aligned_cols=154 Identities=16% Similarity=0.222 Sum_probs=108.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccc-cEEEEEE
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG-QCAIIMF 93 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~-~~~i~v~ 93 (176)
+|+++|+++||||||++++..+.+...+.++. ................+.+||+||+++++..+..+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~-~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIE-PNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEe-ecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 68999999999999999999888766654442 222222222224567799999999999988888888998 9999999
Q ss_pred eCCCh-hhhhhHHHHHHHHhhh----cCCCCEEEEEeCCCCCccccCHHHH--------HHHH-----------------
Q 030504 94 DVTAR-LTYKNVPTWHRDLCRV----CENIPIVLCGNKVDVKNRQVKAKQV--------TFHR----------------- 143 (176)
Q Consensus 94 d~~~~-~s~~~~~~~~~~~~~~----~~~~p~liv~nK~Dl~~~~~~~~~~--------~~~~----------------- 143 (176)
|+.+. .++..+..|+..+... .++.|+++++||+|+.......... .+..
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~ 160 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKE 160 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence 99987 6666666555444321 2589999999999987533211100 0000
Q ss_pred ---------------HcCCeEEEeccCCCC-ChHHHHHHHHH
Q 030504 144 ---------------KKNLQYYEISAKSNY-NFEKPFLYLAR 169 (176)
Q Consensus 144 ---------------~~~~~~~~~S~~~~~-~v~~~~~~l~~ 169 (176)
...+.+.++|++.+. |++.+.+|+.+
T Consensus 161 ~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 161 SLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred ccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 011347889998776 69999999864
No 176
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.91 E-value=3.5e-23 Score=136.08 Aligned_cols=154 Identities=19% Similarity=0.198 Sum_probs=100.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc-----------cccc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-----------LRDG 81 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-----------~~~~ 81 (176)
.++|+++|.+|+|||||+++++....... ....+.+...........+..+.+|||||...... ....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~ 80 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIV-SDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK 80 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceec-cCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHH
Confidence 58999999999999999999876543211 11122222222222222334578999999754311 1122
Q ss_pred ccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc--cCHHHH-HHHHHc----CCeEEEecc
Q 030504 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--VKAKQV-TFHRKK----NLQYYEISA 154 (176)
Q Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~--~~~~~~-~~~~~~----~~~~~~~S~ 154 (176)
.+..+|++++|+|++++.+.... .+...+.. .+.|+++++||+|+.+.. ...... ...+.. ..+++++|+
T Consensus 81 ~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 157 (174)
T cd01895 81 AIERADVVLLVIDATEGITEQDL-RIAGLILE--EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISA 157 (174)
T ss_pred HHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh--cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEec
Confidence 45689999999999988665443 22333333 378999999999997652 222212 222222 368999999
Q ss_pred CCCCChHHHHHHHHHH
Q 030504 155 KSNYNFEKPFLYLARK 170 (176)
Q Consensus 155 ~~~~~v~~~~~~l~~~ 170 (176)
+++.|++++++++.+.
T Consensus 158 ~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 158 LTGQGVDKLFDAIDEV 173 (174)
T ss_pred cCCCCHHHHHHHHHHh
Confidence 9999999999998764
No 177
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.91 E-value=3.7e-24 Score=142.59 Aligned_cols=158 Identities=19% Similarity=0.180 Sum_probs=109.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCC--CC--------------ccccceeEEEeEEEEEec--CcEEEEEEEeCCCcc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEF--EK--------------KYEPTIGVEVHPLDFFTN--CGKIRFYCWDTAGQE 73 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~--~~--------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~g~~ 73 (176)
+.++|+++|+.++|||||+.+++.... .. ......+.+......... .....+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 568999999999999999999875331 11 001112223333333333 567789999999999
Q ss_pred ccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHH---H-HHHHHc----
Q 030504 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ---V-TFHRKK---- 145 (176)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~---~-~~~~~~---- 145 (176)
.+.......+..+|++|+|+|+.++...+.. ..+..+... +.|+++++||+|+......... . .+.+..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~~-~~l~~~~~~--~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~ 158 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQTE-EHLKILREL--GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENG 158 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHHH-HHHHHHHHT--T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred ceeecccceecccccceeeeecccccccccc-ccccccccc--ccceEEeeeeccchhhhHHHHHHHHHHHhccccccCc
Confidence 9888777778999999999999977443332 333344444 8899999999999843322222 2 233333
Q ss_pred --CCeEEEeccCCCCChHHHHHHHHHHHh
Q 030504 146 --NLQYYEISAKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 146 --~~~~~~~S~~~~~~v~~~~~~l~~~i~ 172 (176)
.++++.+||++|.|++++++.+.+.+.
T Consensus 159 ~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 159 EEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp TSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred cccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 357999999999999999999988753
No 178
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.91 E-value=2.5e-23 Score=158.69 Aligned_cols=159 Identities=14% Similarity=0.170 Sum_probs=115.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcC--CCCC-----c------cccceeEEEeEEEEEe-----cCcEEEEEEEeCCCcc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTG--EFEK-----K------YEPTIGVEVHPLDFFT-----NCGKIRFYCWDTAGQE 73 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~--~~~~-----~------~~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~g~~ 73 (176)
...|++++|+.++|||||+.+++.. .... . .....|.+........ ++..+.+.+|||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 3468999999999999999998752 2111 0 0122344444333322 4557899999999999
Q ss_pred ccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCC---eEE
Q 030504 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYY 150 (176)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~ 150 (176)
.+...+..++..+|++++|+|++++...+....|.... . .+.|+++|+||.|+..........++....++ .++
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-~--~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi 162 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E--NDLEIIPVLNKIDLPAADPERVKQEIEDVIGIDASDAV 162 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H--CCCCEEEEEECCCCCcccHHHHHHHHHHHhCCCcceEE
Confidence 99888889999999999999999876666555554332 2 37899999999999754332222334444454 389
Q ss_pred EeccCCCCChHHHHHHHHHHHhc
Q 030504 151 EISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 151 ~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
++||++|.|++++++++++.+..
T Consensus 163 ~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 163 LVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred EEecCCCCCHHHHHHHHHHhCcc
Confidence 99999999999999999987753
No 179
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.91 E-value=1.9e-23 Score=138.23 Aligned_cols=147 Identities=15% Similarity=0.115 Sum_probs=97.8
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccc----------cccc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----------FGGL 78 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~ 78 (176)
++....+|+++|.+|+|||||++++....+...+.++.|.+........+. .+.+|||||... +...
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH
Confidence 345678999999999999999999887765445555666555444333332 589999999532 1222
Q ss_pred cccccc---cccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc----CHHHHHHHHHcC--CeE
Q 030504 79 RDGYYI---HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKN--LQY 149 (176)
Q Consensus 79 ~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~----~~~~~~~~~~~~--~~~ 149 (176)
...+++ .++++++|+|++++.+.... .++..+... +.|+++++||+|+..... ..+..+.+...+ +.+
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~~--~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v 167 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRER--GIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSV 167 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHHc--CCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCce
Confidence 223443 35899999999876443333 223333333 789999999999875321 222334444443 589
Q ss_pred EEeccCCCCChH
Q 030504 150 YEISAKSNYNFE 161 (176)
Q Consensus 150 ~~~S~~~~~~v~ 161 (176)
+++||++|+|++
T Consensus 168 ~~~Sa~~g~gi~ 179 (179)
T TIGR03598 168 QLFSSLKKTGID 179 (179)
T ss_pred EEEECCCCCCCC
Confidence 999999999974
No 180
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.91 E-value=2.3e-23 Score=154.89 Aligned_cols=152 Identities=20% Similarity=0.157 Sum_probs=107.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcc--------ccccccccccccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE--------KFGGLRDGYYIHG 86 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~~~~~~ 86 (176)
+|+++|.+|||||||+|++...+. .......|.+...........+..+.+|||||.. .+......+++.+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~-~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~a 79 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRD-AIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEA 79 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCc-ceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhC
Confidence 589999999999999999876653 2223344555555544444455579999999963 2333455567889
Q ss_pred cEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCC-eEEEeccCCCCChHHHHH
Q 030504 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFL 165 (176)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~~ 165 (176)
|++++|+|+.++.+.... .+...+.+. ++|+++|+||+|+...... ..+ +...++ .++++||++|.|++++++
T Consensus 80 d~vl~vvD~~~~~~~~d~-~i~~~l~~~--~~piilVvNK~D~~~~~~~--~~~-~~~lg~~~~~~vSa~~g~gv~~ll~ 153 (429)
T TIGR03594 80 DVILFVVDGREGLTPEDE-EIAKWLRKS--GKPVILVANKIDGKKEDAV--AAE-FYSLGFGEPIPISAEHGRGIGDLLD 153 (429)
T ss_pred CEEEEEEeCCCCCCHHHH-HHHHHHHHh--CCCEEEEEECccCCccccc--HHH-HHhcCCCCeEEEeCCcCCChHHHHH
Confidence 999999999875433221 222233332 8899999999998754322 122 345566 799999999999999999
Q ss_pred HHHHHHhc
Q 030504 166 YLARKLAG 173 (176)
Q Consensus 166 ~l~~~i~~ 173 (176)
++.+.+.+
T Consensus 154 ~i~~~l~~ 161 (429)
T TIGR03594 154 AILELLPE 161 (429)
T ss_pred HHHHhcCc
Confidence 99988754
No 181
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.91 E-value=5.6e-23 Score=156.50 Aligned_cols=155 Identities=17% Similarity=0.113 Sum_probs=109.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc---CCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT---GEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
+.|+++|+.++|||||++++.+ ..+..++.++.+.+.....+..+ ...+.+||+||++.|.......+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~--~~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLP--DYRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeC--CEEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 4799999999999999999774 23333334444334333333333 378999999999999888888889999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhcCCCC-EEEEEeCCCCCcccc----CHHHHHHHHHc----CCeEEEeccCCCCChH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV----KAKQVTFHRKK----NLQYYEISAKSNYNFE 161 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~liv~nK~Dl~~~~~----~~~~~~~~~~~----~~~~~~~S~~~~~~v~ 161 (176)
+|+|++++...+...+ +..+.. .+.| +++++||+|+.+... ..+..+++... +++++++|+++|+|++
T Consensus 79 LVVDa~~G~~~qT~eh-l~il~~--lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~ 155 (581)
T TIGR00475 79 LVVDADEGVMTQTGEH-LAVLDL--LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIG 155 (581)
T ss_pred EEEECCCCCcHHHHHH-HHHHHH--cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCch
Confidence 9999998432222222 222222 2677 999999999976432 22233444443 5789999999999999
Q ss_pred HHHHHHHHHHhc
Q 030504 162 KPFLYLARKLAG 173 (176)
Q Consensus 162 ~~~~~l~~~i~~ 173 (176)
+++.++...+..
T Consensus 156 eL~~~L~~l~~~ 167 (581)
T TIGR00475 156 ELKKELKNLLES 167 (581)
T ss_pred hHHHHHHHHHHh
Confidence 999998776543
No 182
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.91 E-value=2.8e-23 Score=159.97 Aligned_cols=159 Identities=19% Similarity=0.195 Sum_probs=111.2
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeE--EEeEEEEEecCcEEEEEEEeCCCcccccccccccccccc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGV--EVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 87 (176)
..+..+|+++|+.++|||||++++....+.....+.... ..........+....+.+|||||++.|..++..++..+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 346679999999999999999998876654332222211 112222223345688999999999999999988999999
Q ss_pred EEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHH------HHHcC--CeEEEeccCCCCC
Q 030504 88 CAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTF------HRKKN--LQYYEISAKSNYN 159 (176)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~------~~~~~--~~~~~~S~~~~~~ 159 (176)
++++|+|++++...+....+ ..+.. .+.|+++++||+|+.......-...+ ....+ ++++++||++|.|
T Consensus 321 iaILVVDA~dGv~~QT~E~I-~~~k~--~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~G 397 (742)
T CHL00189 321 IAILIIAADDGVKPQTIEAI-NYIQA--ANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTN 397 (742)
T ss_pred EEEEEEECcCCCChhhHHHH-HHHHh--cCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCC
Confidence 99999999886443333322 22222 37899999999999764321111111 12222 6899999999999
Q ss_pred hHHHHHHHHHHH
Q 030504 160 FEKPFLYLARKL 171 (176)
Q Consensus 160 v~~~~~~l~~~i 171 (176)
++++++++....
T Consensus 398 IdeLle~I~~l~ 409 (742)
T CHL00189 398 IDKLLETILLLA 409 (742)
T ss_pred HHHHHHhhhhhh
Confidence 999999998753
No 183
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.91 E-value=1e-22 Score=158.09 Aligned_cols=157 Identities=13% Similarity=0.150 Sum_probs=110.9
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
...+..+|+++|+.++|||||++++..+.+.....+ |++.......+...+..+.+|||||++.|..++...+..+|+
T Consensus 286 ~~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~--GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDi 363 (787)
T PRK05306 286 LVPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAG--GITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDI 363 (787)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCccccccC--ceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCE
Confidence 346778899999999999999999887766543322 333333323333334678999999999999988888899999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCH---HHH---HHHHHcC--CeEEEeccCCCCCh
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---KQV---TFHRKKN--LQYYEISAKSNYNF 160 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~---~~~---~~~~~~~--~~~~~~S~~~~~~v 160 (176)
+|+|||+++...-+....| ..... .+.|+++++||+|+....... +.. .+....+ ++++++||++|.|+
T Consensus 364 aILVVdAddGv~~qT~e~i-~~a~~--~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI 440 (787)
T PRK05306 364 VVLVVAADDGVMPQTIEAI-NHAKA--AGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGI 440 (787)
T ss_pred EEEEEECCCCCCHhHHHHH-HHHHh--cCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCc
Confidence 9999999885433333322 22222 389999999999996532211 111 1122222 78999999999999
Q ss_pred HHHHHHHHHH
Q 030504 161 EKPFLYLARK 170 (176)
Q Consensus 161 ~~~~~~l~~~ 170 (176)
+++|++|...
T Consensus 441 ~eLle~I~~~ 450 (787)
T PRK05306 441 DELLEAILLQ 450 (787)
T ss_pred hHHHHhhhhh
Confidence 9999998753
No 184
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=5.8e-23 Score=152.08 Aligned_cols=158 Identities=16% Similarity=0.094 Sum_probs=104.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccc----c---ccccccccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG----G---LRDGYYIHG 86 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----~---~~~~~~~~~ 86 (176)
..|+|+|.|+||||||++++...+.. .....++|.......+......|.+||+||.-... . .....+.++
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpk--IadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhiera 237 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPK--IADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERC 237 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCcc--ccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence 46999999999999999998765432 12222333333333333344679999999963211 1 122245779
Q ss_pred cEEEEEEeCCCh----hhhhhHHHHHHHHhh------------hcCCCCEEEEEeCCCCCccccCH-HHHHHHHHcCCeE
Q 030504 87 QCAIIMFDVTAR----LTYKNVPTWHRDLCR------------VCENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQY 149 (176)
Q Consensus 87 ~~~i~v~d~~~~----~s~~~~~~~~~~~~~------------~~~~~p~liv~nK~Dl~~~~~~~-~~~~~~~~~~~~~ 149 (176)
+++++|+|+++. ..++....+...+.. ...++|.++|+||+|+.+..... .....+...++++
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~V 317 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEARGWPV 317 (500)
T ss_pred CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCCeE
Confidence 999999999853 233333333333322 22478999999999997533222 2223444568899
Q ss_pred EEeccCCCCChHHHHHHHHHHHhc
Q 030504 150 YEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 150 ~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
+++||++++|+++++.+|.+.+.+
T Consensus 318 f~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 318 FEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999987754
No 185
>PRK00089 era GTPase Era; Reviewed
Probab=99.90 E-value=1.3e-22 Score=143.77 Aligned_cols=159 Identities=16% Similarity=0.134 Sum_probs=104.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc--------cccccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--------LRDGYY 83 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~ 83 (176)
+.-.|+++|.+|||||||+|++++..... ..+...++..............+.++||||...... .....+
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~-vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~ 82 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISI-VSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL 82 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceee-cCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence 45679999999999999999977655422 222223333333322222346899999999754321 223356
Q ss_pred ccccEEEEEEeCCChhhhhhHHH-HHHHHhhhcCCCCEEEEEeCCCCCc-cccCHH-HHHHHHHc-CCeEEEeccCCCCC
Q 030504 84 IHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKK-NLQYYEISAKSNYN 159 (176)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~p~liv~nK~Dl~~-~~~~~~-~~~~~~~~-~~~~~~~S~~~~~~ 159 (176)
..+|++++|+|+++.. ..... ....+.. .+.|+++|+||+|+.. ...... ...+.... ...++++||+++.|
T Consensus 83 ~~~D~il~vvd~~~~~--~~~~~~i~~~l~~--~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~g 158 (292)
T PRK00089 83 KDVDLVLFVVDADEKI--GPGDEFILEKLKK--VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDN 158 (292)
T ss_pred hcCCEEEEEEeCCCCC--ChhHHHHHHHHhh--cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCC
Confidence 7899999999998832 22222 2222222 3789999999999973 222222 22333333 36899999999999
Q ss_pred hHHHHHHHHHHHhcCC
Q 030504 160 FEKPFLYLARKLAGST 175 (176)
Q Consensus 160 v~~~~~~l~~~i~~~~ 175 (176)
++++++++.+.+.+.+
T Consensus 159 v~~L~~~L~~~l~~~~ 174 (292)
T PRK00089 159 VDELLDVIAKYLPEGP 174 (292)
T ss_pred HHHHHHHHHHhCCCCC
Confidence 9999999999886554
No 186
>PRK11058 GTPase HflX; Provisional
Probab=99.90 E-value=1.1e-22 Score=149.45 Aligned_cols=156 Identities=17% Similarity=0.115 Sum_probs=102.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccc--cccccc------cccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF--GGLRDG------YYIH 85 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--~~~~~~------~~~~ 85 (176)
.+|+++|.+|||||||+|++.+........+....+.........+. ..+.+|||+|..+. ...+.. .+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 57999999999999999998765432211112112222222333322 25789999997432 222222 3578
Q ss_pred ccEEEEEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccccCHHHHHHHHHcCCe-EEEeccCCCCChHHH
Q 030504 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ-YYEISAKSNYNFEKP 163 (176)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~~v~~~ 163 (176)
+|++++|+|++++.+++.+..|...+.... .+.|+++|+||+|+...... . ... ...+.+ ++.+||++|.|++++
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~-~-~~~-~~~~~~~~v~ISAktG~GIdeL 353 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEP-R-IDR-DEENKPIRVWLSAQTGAGIPLL 353 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhH-H-HHH-HhcCCCceEEEeCCCCCCHHHH
Confidence 999999999999887777654444443332 47899999999999643211 1 111 123444 588999999999999
Q ss_pred HHHHHHHHhc
Q 030504 164 FLYLARKLAG 173 (176)
Q Consensus 164 ~~~l~~~i~~ 173 (176)
++++.+.+..
T Consensus 354 ~e~I~~~l~~ 363 (426)
T PRK11058 354 FQALTERLSG 363 (426)
T ss_pred HHHHHHHhhh
Confidence 9999988753
No 187
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=2.8e-22 Score=149.33 Aligned_cols=158 Identities=16% Similarity=0.162 Sum_probs=107.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccc-----------c
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL-----------R 79 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-----------~ 79 (176)
...++|+++|.+++|||||+++++..... ...+..|++...........+..+.+|||||....... .
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~-~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERV-IVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 35799999999999999999997754321 12334455555554444344566789999996543221 1
Q ss_pred ccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHH-HHH----HcCCeEEEecc
Q 030504 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVT-FHR----KKNLQYYEISA 154 (176)
Q Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~-~~~----~~~~~~~~~S~ 154 (176)
..++..+|++++|+|++++.+.+... +...+.+. +.|+++++||+|+.+.....+..+ +.. ...++++++||
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~~--~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA 326 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLR-IAGLALEA--GRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISA 326 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHHc--CCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeC
Confidence 23567899999999999886655442 23333333 799999999999974322222211 111 13578999999
Q ss_pred CCCCChHHHHHHHHHHHh
Q 030504 155 KSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 155 ~~~~~v~~~~~~l~~~i~ 172 (176)
+++.|++++++++.+...
T Consensus 327 ~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 327 LTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999887553
No 188
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.90 E-value=3.2e-22 Score=155.92 Aligned_cols=153 Identities=14% Similarity=0.140 Sum_probs=116.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccc----------ccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL----------RDG 81 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~----------~~~ 81 (176)
+.++|+++|.+|||||||.|++.+.+. ......|.+..............+.++||||...+... ...
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~--~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQ--RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCC--ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHH
Confidence 457999999999999999999875544 23445677777777667777788999999998765432 112
Q ss_pred cc--ccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc-cccCHHHHHHHHHcCCeEEEeccCCCC
Q 030504 82 YY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNY 158 (176)
Q Consensus 82 ~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~S~~~~~ 158 (176)
++ ..+|++++|+|+++.+.. ..+..++.+. +.|+++++||.|+.+ +....+..++.+..+++++++|+++++
T Consensus 80 ~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e~--giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~ 154 (772)
T PRK09554 80 YILSGDADLLINVVDASNLERN---LYLTLQLLEL--GIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGR 154 (772)
T ss_pred HHhccCCCEEEEEecCCcchhh---HHHHHHHHHc--CCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCC
Confidence 22 478999999999886432 2344444444 899999999999874 444455667788899999999999999
Q ss_pred ChHHHHHHHHHHH
Q 030504 159 NFEKPFLYLARKL 171 (176)
Q Consensus 159 ~v~~~~~~l~~~i 171 (176)
|++++.+.+.+..
T Consensus 155 GIdeL~~~I~~~~ 167 (772)
T PRK09554 155 GIEALKLAIDRHQ 167 (772)
T ss_pred CHHHHHHHHHHhh
Confidence 9999999987754
No 189
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=9.1e-23 Score=151.91 Aligned_cols=148 Identities=22% Similarity=0.184 Sum_probs=101.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccc--------ccccccccccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--------FGGLRDGYYIH 85 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~~ 85 (176)
.+|+++|.+|||||||+|++...+.. ......|.+...........+..+.+|||||++. .......++..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~-~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDA-IVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEE 80 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCce-eeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 48999999999999999998766532 1122334444333333332347899999999886 12223456788
Q ss_pred ccEEEEEEeCCChhhhh--hHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCC-eEEEeccCCCCChHH
Q 030504 86 GQCAIIMFDVTARLTYK--NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEK 162 (176)
Q Consensus 86 ~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~ 162 (176)
+|++++|+|++++.+.. .+..|+. .. +.|+++|+||+|+.... ....+ +...++ .++++||++|.|+++
T Consensus 81 ad~il~vvd~~~~~~~~~~~~~~~l~---~~--~~piilv~NK~D~~~~~--~~~~~-~~~lg~~~~~~iSa~~g~gv~~ 152 (435)
T PRK00093 81 ADVILFVVDGRAGLTPADEEIAKILR---KS--NKPVILVVNKVDGPDEE--ADAYE-FYSLGLGEPYPISAEHGRGIGD 152 (435)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHH---Hc--CCcEEEEEECccCccch--hhHHH-HHhcCCCCCEEEEeeCCCCHHH
Confidence 99999999998754332 2233332 22 88999999999975421 12222 234565 489999999999999
Q ss_pred HHHHHHHH
Q 030504 163 PFLYLARK 170 (176)
Q Consensus 163 ~~~~l~~~ 170 (176)
+++++++.
T Consensus 153 l~~~I~~~ 160 (435)
T PRK00093 153 LLDAILEE 160 (435)
T ss_pred HHHHHHhh
Confidence 99999874
No 190
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.90 E-value=3.6e-22 Score=127.18 Aligned_cols=159 Identities=21% Similarity=0.226 Sum_probs=123.1
Q ss_pred CCCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCC--------Ccc----ccceeEEEeEEEEEecCcEEEEEEEeCCCccc
Q 030504 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFE--------KKY----EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (176)
Q Consensus 7 ~~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~--------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 74 (176)
........||+++|+.++||||+++++...... ..+ ..|.+.++..... . ....+.+++||||++
T Consensus 4 ~~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~--~-~~~~v~LfgtPGq~R 80 (187)
T COG2229 4 AANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL--D-EDTGVHLFGTPGQER 80 (187)
T ss_pred ccccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEE--c-CcceEEEecCCCcHH
Confidence 345567899999999999999999997654421 111 1233333333332 2 235688999999999
Q ss_pred cccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHc--CCeEEEe
Q 030504 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK--NLQYYEI 152 (176)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~ 152 (176)
+..+|..+.+++.++|+++|.+++..+ .....+..+.... ..|+++..||.||.+....++..++.... ..+.++.
T Consensus 81 F~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~-~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~~vi~~ 158 (187)
T COG2229 81 FKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN-PIPVVVAINKQDLFDALPPEKIREALKLELLSVPVIEI 158 (187)
T ss_pred HHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc-CCCEEEEeeccccCCCCCHHHHHHHHHhccCCCceeee
Confidence 999999999999999999999999877 4445555554442 29999999999999998888887776665 8899999
Q ss_pred ccCCCCChHHHHHHHHHH
Q 030504 153 SAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 153 S~~~~~~v~~~~~~l~~~ 170 (176)
++..+++..+.+..+...
T Consensus 159 ~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 159 DATEGEGARDQLDVLLLK 176 (187)
T ss_pred ecccchhHHHHHHHHHhh
Confidence 999999999999888765
No 191
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.90 E-value=1.8e-22 Score=153.86 Aligned_cols=145 Identities=14% Similarity=0.111 Sum_probs=103.9
Q ss_pred cCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccc------ccccc--ccccEEEE
Q 030504 20 GDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL------RDGYY--IHGQCAII 91 (176)
Q Consensus 20 G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~~~~~~i~ 91 (176)
|.+|+|||||+|++.+.+..... ..|.+...........+..+.+|||||+..+... .+.++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n--~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGN--WPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecC--CCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 88999999999998776653333 3344444443333333456899999998876543 23333 36899999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcc-ccCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
|+|+++.+. ...+..++.+ .+.|+++++||+|+.++ ....+...+.+..+++++++||++|+|++++++++.+.
T Consensus 79 VvDat~ler---~l~l~~ql~~--~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 79 VVDASNLER---NLYLTLQLLE--LGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKA 153 (591)
T ss_pred EecCCcchh---hHHHHHHHHh--cCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 999987532 2233333333 38999999999999653 33445667788889999999999999999999999875
Q ss_pred H
Q 030504 171 L 171 (176)
Q Consensus 171 i 171 (176)
.
T Consensus 154 ~ 154 (591)
T TIGR00437 154 I 154 (591)
T ss_pred h
Confidence 4
No 192
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.90 E-value=3.6e-22 Score=155.82 Aligned_cols=154 Identities=25% Similarity=0.211 Sum_probs=107.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccc--------cccccccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF--------GGLRDGYY 83 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~ 83 (176)
...+|+++|.++||||||+|++++++. .....+.|++...........+..+.+|||||.+.. ......++
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~-~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRRE-AVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCc-eeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 456899999999999999999876543 223445566666665555445567899999997632 22334457
Q ss_pred ccccEEEEEEeCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCC-eEEEeccCCCCChH
Q 030504 84 IHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFE 161 (176)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~ 161 (176)
..+|++++|+|+++... ... .|...+.. .+.|+++|+||+|+..... ....+. ..+. ..+++||++|.|++
T Consensus 353 ~~aD~iL~VvDa~~~~~--~~d~~i~~~Lr~--~~~pvIlV~NK~D~~~~~~--~~~~~~-~lg~~~~~~iSA~~g~GI~ 425 (712)
T PRK09518 353 SLADAVVFVVDGQVGLT--STDERIVRMLRR--AGKPVVLAVNKIDDQASEY--DAAEFW-KLGLGEPYPISAMHGRGVG 425 (712)
T ss_pred HhCCEEEEEEECCCCCC--HHHHHHHHHHHh--cCCCEEEEEECcccccchh--hHHHHH-HcCCCCeEEEECCCCCCch
Confidence 88999999999986432 222 34444443 4899999999999864321 122222 2232 46799999999999
Q ss_pred HHHHHHHHHHhc
Q 030504 162 KPFLYLARKLAG 173 (176)
Q Consensus 162 ~~~~~l~~~i~~ 173 (176)
++|+++++.+.+
T Consensus 426 eLl~~i~~~l~~ 437 (712)
T PRK09518 426 DLLDEALDSLKV 437 (712)
T ss_pred HHHHHHHHhccc
Confidence 999999988754
No 193
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.89 E-value=2.6e-22 Score=148.80 Aligned_cols=155 Identities=21% Similarity=0.193 Sum_probs=105.1
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhc--CCCCC---------------------------ccccceeEEEeEEEEEecCc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEK---------------------------KYEPTIGVEVHPLDFFTNCG 60 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 60 (176)
+.+.++|+++|++++|||||+++++. |.... ......|++.......++..
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 46789999999999999999999873 21110 00113566777776677777
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc------
Q 030504 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV------ 134 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~------ 134 (176)
.+.+.+|||||++.+.......+..+|++++|+|+++..++.....+...+.......|+++++||.|+.+...
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~ 162 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEV 162 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHH
Confidence 88999999999988766555557889999999999873222222111112222222346999999999975211
Q ss_pred CHHHHHHHHHcC-----CeEEEeccCCCCChHHHH
Q 030504 135 KAKQVTFHRKKN-----LQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 135 ~~~~~~~~~~~~-----~~~~~~S~~~~~~v~~~~ 164 (176)
..+...++...+ ++++++||++|+|+++..
T Consensus 163 ~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 163 KEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 123334444444 579999999999998743
No 194
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=2.8e-22 Score=145.88 Aligned_cols=158 Identities=15% Similarity=0.082 Sum_probs=107.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecC-cEEEEEEEeCCCcccccc-------ccccccccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFGG-------LRDGYYIHG 86 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~-------~~~~~~~~~ 86 (176)
.|+|+|.|+||||||+|++...+. ...+..++|.......+.. ....+.++||||...... .....+..+
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~--~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP--KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc--cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 599999999999999999775543 2233333444444333322 234589999999643211 112246789
Q ss_pred cEEEEEEeCC---ChhhhhhHHHHHHHHhhhc---CCCCEEEEEeCCCCCccccCHH-HHHHHHHcC--CeEEEeccCCC
Q 030504 87 QCAIIMFDVT---ARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKN--LQYYEISAKSN 157 (176)
Q Consensus 87 ~~~i~v~d~~---~~~s~~~~~~~~~~~~~~~---~~~p~liv~nK~Dl~~~~~~~~-~~~~~~~~~--~~~~~~S~~~~ 157 (176)
+++++|+|++ +...++....|...+.... .+.|+++|+||+|+.......+ ...+.+..+ ..++.+||+++
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg 318 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASG 318 (390)
T ss_pred CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 9999999988 3445565666666655432 4789999999999975432222 223344434 46899999999
Q ss_pred CChHHHHHHHHHHHhcC
Q 030504 158 YNFEKPFLYLARKLAGS 174 (176)
Q Consensus 158 ~~v~~~~~~l~~~i~~~ 174 (176)
.|+++++++|.+.+.+.
T Consensus 319 ~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 319 LGVKELCWDLMTFIEEN 335 (390)
T ss_pred cCHHHHHHHHHHHhhhC
Confidence 99999999999988654
No 195
>PRK10218 GTP-binding protein; Provisional
Probab=99.89 E-value=1.5e-21 Score=148.53 Aligned_cols=158 Identities=16% Similarity=0.192 Sum_probs=119.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc--CCCCCcc------------ccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT--GEFEKKY------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG 77 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 77 (176)
...||+++|+.++|||||+++++. |.+...+ ..+.|++.......+....+.+.+|||||+..+..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 457899999999999999999886 4443221 23567777777777777889999999999999998
Q ss_pred ccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCH---HHHHHHHH-------cCC
Q 030504 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---KQVTFHRK-------KNL 147 (176)
Q Consensus 78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~---~~~~~~~~-------~~~ 147 (176)
.+..+++.+|++++|+|+.+....+....| ...... +.|.++++||+|+....... +...++.. ..+
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l-~~a~~~--gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~ 160 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQTRFVT-KKAFAY--GLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDF 160 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHHHHHH-HHHHHc--CCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCC
Confidence 899999999999999999876443333333 333333 88999999999997644322 23333322 347
Q ss_pred eEEEeccCCCC----------ChHHHHHHHHHHHh
Q 030504 148 QYYEISAKSNY----------NFEKPFLYLARKLA 172 (176)
Q Consensus 148 ~~~~~S~~~~~----------~v~~~~~~l~~~i~ 172 (176)
+++.+||++|. |+..+++.++..+.
T Consensus 161 PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 161 PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred CEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 89999999998 58888888887765
No 196
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.89 E-value=5.4e-22 Score=128.55 Aligned_cols=150 Identities=18% Similarity=0.219 Sum_probs=102.0
Q ss_pred EEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecC-cEEEEEEEeCCCcccccccc-------ccccccccEE
Q 030504 18 IVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFGGLR-------DGYYIHGQCA 89 (176)
Q Consensus 18 i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~-------~~~~~~~~~~ 89 (176)
++|++|+|||||++++....... .....+.+.......... ....+.+||+||........ ..++..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI-VSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccc-cCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 58999999999999977544331 122222222222222221 25678999999987654333 3467889999
Q ss_pred EEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHH-----HHHHHHcCCeEEEeccCCCCChHHHH
Q 030504 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-----VTFHRKKNLQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~-----~~~~~~~~~~~~~~S~~~~~~v~~~~ 164 (176)
++|+|+++........ +...... .+.|+++|+||+|+......... .......+.+++++|++++.|+++++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~ 156 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLRE--RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELR 156 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHHh--cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHH
Confidence 9999999876555543 3333333 38999999999999764433332 12233346889999999999999999
Q ss_pred HHHHHHH
Q 030504 165 LYLARKL 171 (176)
Q Consensus 165 ~~l~~~i 171 (176)
.++.+.+
T Consensus 157 ~~l~~~~ 163 (163)
T cd00880 157 EALIEAL 163 (163)
T ss_pred HHHHhhC
Confidence 9998753
No 197
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.89 E-value=5.3e-22 Score=147.13 Aligned_cols=153 Identities=19% Similarity=0.163 Sum_probs=105.7
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhc--CCCCCc---------------------------cccceeEEEeEEEEEecCc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK---------------------------YEPTIGVEVHPLDFFTNCG 60 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~ 60 (176)
+.+.++|+++|+.++|||||+.+++. |..... .....|.+.......+...
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 56789999999999999999999875 322110 0112355555555566667
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhh--HHHHHHHHhhhcCCCCEEEEEeCCCCCcccc----
Q 030504 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN--VPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---- 134 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~---- 134 (176)
.+.+.+|||||++.+.......+..+|++++|+|++++.++.. ...++ .+.......|+++++||+|+.+...
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~-~~~~~~~~~~iIVviNK~Dl~~~~~~~~~ 162 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHA-FLARTLGINQLIVAINKMDSVNYDEEEFE 162 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHH-HHHHHcCCCeEEEEEEChhccCccHHHHH
Confidence 7889999999999876666666789999999999998743211 11111 2222223457999999999964211
Q ss_pred --CHHHHHHHHHcC-----CeEEEeccCCCCChHHH
Q 030504 135 --KAKQVTFHRKKN-----LQYYEISAKSNYNFEKP 163 (176)
Q Consensus 135 --~~~~~~~~~~~~-----~~~~~~S~~~~~~v~~~ 163 (176)
..+...+++..+ ++++++||++|.|+.+.
T Consensus 163 ~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~ 198 (426)
T TIGR00483 163 AIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKK 198 (426)
T ss_pred HHHHHHHHHHHHcCCCcccceEEEeecccccccccc
Confidence 223345555554 67999999999999863
No 198
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.89 E-value=4.4e-22 Score=155.29 Aligned_cols=156 Identities=15% Similarity=0.195 Sum_probs=104.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEE--EEEecCcEEEEEEEeCCCccccc-cc----------
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL--DFFTNCGKIRFYCWDTAGQEKFG-GL---------- 78 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~D~~g~~~~~-~~---------- 78 (176)
...||+++|.+|||||||+|+++...... .....|++.... .+..++. .+.+|||||..+.. ..
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~-v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r 525 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAV-VNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLR 525 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccc-cCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHH
Confidence 45899999999999999999988765311 112223333333 3334433 46799999964211 11
Q ss_pred cccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHH-HHHH----cCCeEEEec
Q 030504 79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVT-FHRK----KNLQYYEIS 153 (176)
Q Consensus 79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~-~~~~----~~~~~~~~S 153 (176)
....++.+|++++|+|++++.+.+.... +..+.. .++|+++|+||+|+.+......... +... ...+++.+|
T Consensus 526 ~~~~i~~advvilViDat~~~s~~~~~i-~~~~~~--~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iS 602 (712)
T PRK09518 526 TQAAIERSELALFLFDASQPISEQDLKV-MSMAVD--AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLS 602 (712)
T ss_pred HHHHhhcCCEEEEEEECCCCCCHHHHHH-HHHHHH--cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEE
Confidence 1234678999999999998877766543 333333 3899999999999975322222211 1111 135679999
Q ss_pred cCCCCChHHHHHHHHHHHhc
Q 030504 154 AKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 154 ~~~~~~v~~~~~~l~~~i~~ 173 (176)
|++|.|++++|+.+.+.+.+
T Consensus 603 Aktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 603 AKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999987754
No 199
>COG1159 Era GTPase [General function prediction only]
Probab=99.88 E-value=1.1e-21 Score=134.40 Aligned_cols=161 Identities=16% Similarity=0.155 Sum_probs=114.7
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccc--------ccccc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG--------GLRDG 81 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~ 81 (176)
....--|+++|.|++|||||+|++++.+ ....++...+|+......+.....++.+.||||...-+ .....
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~K-isIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~ 81 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQK-ISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARS 81 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCc-eEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHH
Confidence 3456779999999999999999965444 34456666677777776666667889999999954322 12333
Q ss_pred ccccccEEEEEEeCCChhhhhhHHHH-HHHHhhhcCCCCEEEEEeCCCCCcccc-CHHHHHHHHHc--CCeEEEeccCCC
Q 030504 82 YYIHGQCAIIMFDVTARLTYKNVPTW-HRDLCRVCENIPIVLCGNKVDVKNRQV-KAKQVTFHRKK--NLQYYEISAKSN 157 (176)
Q Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~-~~~~~~~~~~~p~liv~nK~Dl~~~~~-~~~~~~~~~~~--~~~~~~~S~~~~ 157 (176)
.+..+|++++|+|+++...- -..+ ++.+.. .+.|+++++||.|...... .....+.+... ....+++||++|
T Consensus 82 sl~dvDlilfvvd~~~~~~~--~d~~il~~lk~--~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g 157 (298)
T COG1159 82 ALKDVDLILFVVDADEGWGP--GDEFILEQLKK--TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKG 157 (298)
T ss_pred HhccCcEEEEEEeccccCCc--cHHHHHHHHhh--cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeecccc
Confidence 46789999999999875322 2222 223322 3789999999999876544 23333333332 247999999999
Q ss_pred CChHHHHHHHHHHHhcCC
Q 030504 158 YNFEKPFLYLARKLAGST 175 (176)
Q Consensus 158 ~~v~~~~~~l~~~i~~~~ 175 (176)
.|++.+.+.+...+.+.|
T Consensus 158 ~n~~~L~~~i~~~Lpeg~ 175 (298)
T COG1159 158 DNVDTLLEIIKEYLPEGP 175 (298)
T ss_pred CCHHHHHHHHHHhCCCCC
Confidence 999999999999887765
No 200
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.88 E-value=2.6e-24 Score=136.65 Aligned_cols=162 Identities=33% Similarity=0.521 Sum_probs=140.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecC-cEEEEEEEeCCCccccccccccccccccEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
--+|++|+|.-++|||+++.+++...+...|..++|.++......-+. ..+.+++||..|++++..+.+-+++.+++.+
T Consensus 24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~ 103 (229)
T KOG4423|consen 24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAF 103 (229)
T ss_pred hhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceE
Confidence 457999999999999999999999999999999999888877665543 3568899999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc-----CCCCEEEEEeCCCCCccccC---HHHHHHHHHcCC-eEEEeccCCCCChH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVK---AKQVTFHRKKNL-QYYEISAKSNYNFE 161 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~liv~nK~Dl~~~~~~---~~~~~~~~~~~~-~~~~~S~~~~~~v~ 161 (176)
+|||+++...|+...+|.+.+.... ...|+++.+||||....... ....++.+++|+ ..+++|++.+.+++
T Consensus 104 iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni~ 183 (229)
T KOG4423|consen 104 IVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNIP 183 (229)
T ss_pred EEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccChh
Confidence 9999999999999999999987653 24678999999999864433 345577888885 69999999999999
Q ss_pred HHHHHHHHHHhc
Q 030504 162 KPFLYLARKLAG 173 (176)
Q Consensus 162 ~~~~~l~~~i~~ 173 (176)
|+-+.+++++.-
T Consensus 184 Ea~r~lVe~~lv 195 (229)
T KOG4423|consen 184 EAQRELVEKILV 195 (229)
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
No 201
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.88 E-value=1.3e-21 Score=148.92 Aligned_cols=157 Identities=16% Similarity=0.225 Sum_probs=116.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc--CCCCCcc------------ccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT--GEFEKKY------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR 79 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 79 (176)
.||+|+|+.++|||||+.+++. |.+.... ....|++.......+.+..+.+.+|||||+..|...+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 4899999999999999999885 4332221 1234566666666666678899999999999998888
Q ss_pred ccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc---CHHHHHHHH-------HcCCeE
Q 030504 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQVTFHR-------KKNLQY 149 (176)
Q Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~---~~~~~~~~~-------~~~~~~ 149 (176)
..++..+|++++|+|+.+... .....++..+... +.|.++++||.|+..... ..+...++. +..+++
T Consensus 82 ~~~l~~aD~alLVVDa~~G~~-~qT~~~l~~a~~~--~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pv 158 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGPM-PQTRFVLKKALEL--GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPI 158 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCCc-HHHHHHHHHHHHC--CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcE
Confidence 888999999999999987542 2333445555544 889999999999975432 223333332 235789
Q ss_pred EEeccCCCC----------ChHHHHHHHHHHHhc
Q 030504 150 YEISAKSNY----------NFEKPFLYLARKLAG 173 (176)
Q Consensus 150 ~~~S~~~~~----------~v~~~~~~l~~~i~~ 173 (176)
+.+||++|. |++.+|+.+++.+..
T Consensus 159 l~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 159 VYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred EechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 999999996 799999999987753
No 202
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.88 E-value=2e-21 Score=140.21 Aligned_cols=155 Identities=17% Similarity=0.184 Sum_probs=118.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccc--------cccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGY 82 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~ 82 (176)
...+|++++|.||+|||||+|. +.++.....+...|+|++..+..++-.++.+.+.||+|....... ....
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNa-L~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNA-LLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHH-HhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence 4678999999999999999998 556656666778899999999999989999999999997654432 2334
Q ss_pred cccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChHH
Q 030504 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
+.++|.+++|+|.+.+..-+... .+. ....++|+++|.||.|+......... ....+.+++.+|+++++|++.
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d~~-~~~---~~~~~~~~i~v~NK~DL~~~~~~~~~---~~~~~~~~i~iSa~t~~Gl~~ 366 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKEDLA-LIE---LLPKKKPIIVVLNKADLVSKIELESE---KLANGDAIISISAKTGEGLDA 366 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhhHH-HHH---hcccCCCEEEEEechhcccccccchh---hccCCCceEEEEecCccCHHH
Confidence 77899999999999862212111 111 23358999999999999876553333 223344789999999999999
Q ss_pred HHHHHHHHHhc
Q 030504 163 PFLYLARKLAG 173 (176)
Q Consensus 163 ~~~~l~~~i~~ 173 (176)
+.+.|.+.+..
T Consensus 367 L~~~i~~~~~~ 377 (454)
T COG0486 367 LREAIKQLFGK 377 (454)
T ss_pred HHHHHHHHHhh
Confidence 99998876543
No 203
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.87 E-value=3.6e-21 Score=125.91 Aligned_cols=149 Identities=15% Similarity=0.153 Sum_probs=99.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccc----------ccccccccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF----------GGLRDGYYI 84 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----------~~~~~~~~~ 84 (176)
.|+++|.+|+|||||++.+.++.......++.+.+........+. .+.+|||||.... ......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 489999999999999999886666666666666555544443332 7899999995332 222233333
Q ss_pred ---cccEEEEEEeCCChhhh--hhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCH----HHHHHHH--HcCCeEEEec
Q 030504 85 ---HGQCAIIMFDVTARLTY--KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----KQVTFHR--KKNLQYYEIS 153 (176)
Q Consensus 85 ---~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~----~~~~~~~--~~~~~~~~~S 153 (176)
..+++++++|.....+. ..+..|+ ... +.|+++++||+|+....... ......+ ....+++++|
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l---~~~--~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~S 152 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWL---EEL--GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFS 152 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHH---HHc--CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEe
Confidence 45788999998865322 2223333 332 68999999999985432211 1122222 3456899999
Q ss_pred cCCCCChHHHHHHHHHHH
Q 030504 154 AKSNYNFEKPFLYLARKL 171 (176)
Q Consensus 154 ~~~~~~v~~~~~~l~~~i 171 (176)
++++.|+++++++|.+.+
T Consensus 153 a~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 153 SLKGQGIDELRALIEKWL 170 (170)
T ss_pred cCCCCCHHHHHHHHHHhC
Confidence 999999999999998753
No 204
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.87 E-value=1.6e-21 Score=131.79 Aligned_cols=146 Identities=20% Similarity=0.193 Sum_probs=95.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC-CCc----------------------------cccceeEEEeEEEEEecCcEEEEE
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF-EKK----------------------------YEPTIGVEVHPLDFFTNCGKIRFY 65 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~-~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 65 (176)
||+++|++++|||||+++++...- ... .....|++.......+......+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 689999999999999999864211 000 000134455555555555667889
Q ss_pred EEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc------CHHHH
Q 030504 66 CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV------KAKQV 139 (176)
Q Consensus 66 ~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~------~~~~~ 139 (176)
+|||||++.+.......+..+|++++|+|++++..-+.. .....+ ......++++|+||.|+..... ..+..
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~~~~~-~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~ 158 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR-RHSYIL-SLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYL 158 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH-HHHHHH-HHcCCCcEEEEEEchhcccCCHHHHHHHHHHHH
Confidence 999999988766556667899999999999876422221 111222 2222345788999999864221 12233
Q ss_pred HHHHHcC---CeEEEeccCCCCChHH
Q 030504 140 TFHRKKN---LQYYEISAKSNYNFEK 162 (176)
Q Consensus 140 ~~~~~~~---~~~~~~S~~~~~~v~~ 162 (176)
.+++..+ .+++.+||++|.|+.+
T Consensus 159 ~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 159 AFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 4455555 4589999999999875
No 205
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.87 E-value=5.3e-21 Score=145.14 Aligned_cols=153 Identities=22% Similarity=0.261 Sum_probs=100.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCc----cccceeEEEeEEEEEe------------cCcEEEEEEEeCCCccccccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKK----YEPTIGVEVHPLDFFT------------NCGKIRFYCWDTAGQEKFGGL 78 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~----~~~~~~~~~~~~~~~~------------~~~~~~~~~~D~~g~~~~~~~ 78 (176)
-|+++|++++|||||++++....+... .+.+.|.+........ ..+...+.+|||||++.+..+
T Consensus 6 iV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l 85 (590)
T TIGR00491 6 IVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNL 85 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHHH
Confidence 599999999999999999887665432 2223333322211100 001123889999999999999
Q ss_pred cccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc--------------CH----HH--
Q 030504 79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--------------KA----KQ-- 138 (176)
Q Consensus 79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~--------------~~----~~-- 138 (176)
+..++..+|++++|+|+++....+.... +..+.. .+.|+++++||+|+..... .. +.
T Consensus 86 ~~~~~~~aD~~IlVvD~~~g~~~qt~e~-i~~l~~--~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~~ 162 (590)
T TIGR00491 86 RKRGGALADLAILIVDINEGFKPQTQEA-LNILRM--YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDT 162 (590)
T ss_pred HHHHHhhCCEEEEEEECCcCCCHhHHHH-HHHHHH--cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHHH
Confidence 8889999999999999997432222211 122222 3889999999999863110 00 00
Q ss_pred ------HHHHH------------H--cCCeEEEeccCCCCChHHHHHHHHHH
Q 030504 139 ------VTFHR------------K--KNLQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 139 ------~~~~~------------~--~~~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
..+.. . ...+++++||++|+|+++++.++...
T Consensus 163 ~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 163 KVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred HHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence 00110 1 13689999999999999999998753
No 206
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.87 E-value=4.7e-21 Score=141.03 Aligned_cols=159 Identities=18% Similarity=0.173 Sum_probs=104.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCcccc--ceeEEEeEE----E------------EEe----cC------cEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP--TIGVEVHPL----D------------FFT----NC------GKI 62 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~--~~~~~~~~~----~------------~~~----~~------~~~ 62 (176)
.+.++|+++|+.++|||||++++. +.+...+.. ..|.+.... . ++. +. ...
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt-~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALT-GVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLR 80 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHh-CeecccCHhHHHcCceeEecccccccccccccCcccccccccccccccccccccc
Confidence 468999999999999999999864 332211111 111111111 0 000 11 246
Q ss_pred EEEEEeCCCccccccccccccccccEEEEEEeCCChh-hhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccC----HH
Q 030504 63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK----AK 137 (176)
Q Consensus 63 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~----~~ 137 (176)
.+.+||+||++.+...+...+..+|++++|+|++++. .-+... .+..+ ......|+++++||+|+.+.... .+
T Consensus 81 ~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e-~l~~l-~~~gi~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 81 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKE-HLMAL-EIIGIKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHH-HHHHH-HHcCCCeEEEEEEccccCCHHHHHHHHHH
Confidence 7899999999999887777788899999999999753 222222 22222 22224578999999999753221 12
Q ss_pred HHHHHHHc---CCeEEEeccCCCCChHHHHHHHHHHHh
Q 030504 138 QVTFHRKK---NLQYYEISAKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 138 ~~~~~~~~---~~~~~~~S~~~~~~v~~~~~~l~~~i~ 172 (176)
..++.... +++++++||++|+|+++++++|...+.
T Consensus 159 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 159 IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 22333332 678999999999999999999998654
No 207
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.86 E-value=1.2e-20 Score=138.81 Aligned_cols=164 Identities=16% Similarity=0.115 Sum_probs=104.2
Q ss_pred CCCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccc--cceeEEEeEE----EE--------------E--ec------
Q 030504 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYE--PTIGVEVHPL----DF--------------F--TN------ 58 (176)
Q Consensus 7 ~~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~--~~~~~~~~~~----~~--------------~--~~------ 58 (176)
+....++++|+++|+.++|||||+.++. +.+..... ...|.+.... .. . .+
T Consensus 3 ~~~~~~~~ni~v~Gh~d~GKSTL~~~L~-~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (411)
T PRK04000 3 WEKVQPEVNIGMVGHVDHGKTTLVQALT-GVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSET 81 (411)
T ss_pred cccCCCcEEEEEEccCCCCHHHHHHHhh-CeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccc
Confidence 3456788999999999999999999863 32211111 0112222211 00 0 00
Q ss_pred CcEEEEEEEeCCCccccccccccccccccEEEEEEeCCChh-hhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccC--
Q 030504 59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK-- 135 (176)
Q Consensus 59 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~-- 135 (176)
.....+.+|||||++.+..........+|++++|+|++++. ..+.... +..+.. ....|+++|+||+|+.+....
T Consensus 82 ~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~-l~~l~~-~~i~~iiVVlNK~Dl~~~~~~~~ 159 (411)
T PRK04000 82 ELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEH-LMALDI-IGIKNIVIVQNKIDLVSKERALE 159 (411)
T ss_pred ccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHH-HHHHHH-cCCCcEEEEEEeeccccchhHHH
Confidence 01357899999999987665555566789999999999753 2222222 222222 223478999999999753321
Q ss_pred --HHHHHHHHH---cCCeEEEeccCCCCChHHHHHHHHHHHhc
Q 030504 136 --AKQVTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 136 --~~~~~~~~~---~~~~~~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
.+...+++. .+.+++++||++|.|+++++++|...+..
T Consensus 160 ~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 160 NYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred HHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 122233332 25789999999999999999999987653
No 208
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.86 E-value=4.8e-21 Score=137.96 Aligned_cols=151 Identities=17% Similarity=0.064 Sum_probs=109.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccc---------cccccccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG---------GLRDGYYI 84 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~---------~~~~~~~~ 84 (176)
..|+|+|.|+||||||.||+...+. .....+.|+|++......+..+..|.+.||+|.+... ......+.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~-AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~ 82 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRI-AIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIE 82 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCee-eEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHH
Confidence 5699999999999999999665554 3345567888888777666677779999999976432 22334567
Q ss_pred cccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcC-CeEEEeccCCCCChHHH
Q 030504 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKP 163 (176)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~v~~~ 163 (176)
.+|++++|+|....-+- ....+..+.. ..++|+++|+||+|-.. .++....+.++| -.++.+||..|.|+.++
T Consensus 83 eADvilfvVD~~~Git~--~D~~ia~~Lr-~~~kpviLvvNK~D~~~---~e~~~~efyslG~g~~~~ISA~Hg~Gi~dL 156 (444)
T COG1160 83 EADVILFVVDGREGITP--ADEEIAKILR-RSKKPVILVVNKIDNLK---AEELAYEFYSLGFGEPVPISAEHGRGIGDL 156 (444)
T ss_pred hCCEEEEEEeCCCCCCH--HHHHHHHHHH-hcCCCEEEEEEcccCch---hhhhHHHHHhcCCCCceEeehhhccCHHHH
Confidence 89999999999875322 2222222222 23799999999999862 122233334455 47999999999999999
Q ss_pred HHHHHHHH
Q 030504 164 FLYLARKL 171 (176)
Q Consensus 164 ~~~l~~~i 171 (176)
++++++.+
T Consensus 157 ld~v~~~l 164 (444)
T COG1160 157 LDAVLELL 164 (444)
T ss_pred HHHHHhhc
Confidence 99999986
No 209
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.85 E-value=3.4e-20 Score=123.67 Aligned_cols=147 Identities=16% Similarity=0.089 Sum_probs=99.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCC-----C---------CccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEF-----E---------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG 77 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~-----~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 77 (176)
++++|+++|+.++|||||+++++.... . .......|.+.......++.....+.++||||+..+..
T Consensus 1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~ 80 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIK 80 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHH
Confidence 468999999999999999999875310 0 00111345566655556666677889999999988776
Q ss_pred ccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCC-EEEEEeCCCCCcccc-----CHHHHHHHHHc-----C
Q 030504 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV-----KAKQVTFHRKK-----N 146 (176)
Q Consensus 78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~liv~nK~Dl~~~~~-----~~~~~~~~~~~-----~ 146 (176)
.....+..+|++++|+|+.....-+.. ..+..+... +.| +++++||.|+..... ..+...+.... +
T Consensus 81 ~~~~~~~~~D~~ilVvda~~g~~~~~~-~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~ 157 (195)
T cd01884 81 NMITGAAQMDGAILVVSATDGPMPQTR-EHLLLARQV--GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN 157 (195)
T ss_pred HHHHHhhhCCEEEEEEECCCCCcHHHH-HHHHHHHHc--CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence 667777899999999999875432222 223333333 666 778899999863221 12233444443 3
Q ss_pred CeEEEeccCCCCChH
Q 030504 147 LQYYEISAKSNYNFE 161 (176)
Q Consensus 147 ~~~~~~S~~~~~~v~ 161 (176)
++++.+||++|.|..
T Consensus 158 v~iipiSa~~g~n~~ 172 (195)
T cd01884 158 TPIVRGSALKALEGD 172 (195)
T ss_pred CeEEEeeCccccCCC
Confidence 689999999999853
No 210
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=2.2e-21 Score=121.20 Aligned_cols=155 Identities=17% Similarity=0.277 Sum_probs=122.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
+.-|++++|..++|||||++.+...+. ..+.||...+.....+ .+.+|+.+|.+||...+..|..|+..+|++++
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl-~qhvPTlHPTSE~l~I----g~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~ 93 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPTSEELSI----GGMTFTTFDLGGHLQARRVWKDYFPQVDAIVY 93 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccc-cccCCCcCCChHHhee----cCceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence 456899999999999999998655554 3445666555554444 67889999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHH------HHHcC-----------CeEEEe
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF------HRKKN-----------LQYYEI 152 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~------~~~~~-----------~~~~~~ 152 (176)
.+|+.|.+.+.+.+..++.+... ..+.|+++.+||.|.+......+.... ....+ ...|.|
T Consensus 94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmc 173 (193)
T KOG0077|consen 94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMC 173 (193)
T ss_pred eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEE
Confidence 99999999999888777766544 369999999999999987655443311 11111 247889
Q ss_pred ccCCCCChHHHHHHHHHHH
Q 030504 153 SAKSNYNFEKPFLYLARKL 171 (176)
Q Consensus 153 S~~~~~~v~~~~~~l~~~i 171 (176)
|...+.|..+.|.|+.+.+
T Consensus 174 si~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 174 SIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred EEEccCccceeeeehhhhc
Confidence 9999999999999987754
No 211
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.85 E-value=1.5e-20 Score=117.16 Aligned_cols=134 Identities=19% Similarity=0.269 Sum_probs=89.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcc----ccccccccccccccEEE
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE----KFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----~~~~~~~~~~~~~~~~i 90 (176)
||+++|+.|+|||||++++.+... .+..|..+.+. =.++||||-- .+..-.......+|.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~------------~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYY------------DNTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEec------------ccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 799999999999999999555443 23333322211 1357999931 11222222345899999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc-cccCHHHHHHHHHcCC-eEEEeccCCCCChHHHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~-~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~~~l~ 168 (176)
+|.|++++.+.-.- .+...+ ++|++-|+||+|+.. ....+...++.+.-|+ .+|++|+.+|+|++++.++|-
T Consensus 69 ll~dat~~~~~~pP-----~fa~~f-~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 69 LLQDATEPRSVFPP-----GFASMF-NKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred EEecCCCCCccCCc-----hhhccc-CCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 99999987532111 111222 789999999999983 3333445566666676 579999999999999999873
No 212
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.85 E-value=3.9e-20 Score=126.75 Aligned_cols=150 Identities=15% Similarity=0.060 Sum_probs=95.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc-------cccccccccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-------LRDGYYIHGQ 87 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~~~~~~ 87 (176)
+|+++|.+|+|||||++++.+....... ..+.+...........+..+++||+||...... .....++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~--~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAA--YEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccC--CCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 7899999999999999997755422111 111122222222222456789999999754321 2234678999
Q ss_pred EEEEEEeCCChh-hhhhHHHHHHH----------------------------------------Hh--------------
Q 030504 88 CAIIMFDVTARL-TYKNVPTWHRD----------------------------------------LC-------------- 112 (176)
Q Consensus 88 ~~i~v~d~~~~~-s~~~~~~~~~~----------------------------------------~~-------------- 112 (176)
++++|+|++++. ..+.+...++. +.
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998764 33323222211 00
Q ss_pred ------------hhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHHH
Q 030504 113 ------------RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (176)
Q Consensus 113 ------------~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~i 171 (176)
....-.|+++|+||+|+.... +...+++ ...++++||+++.|++++|+.+.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~---~~~~~~~--~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLISIE---ELDLLAR--QPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCCHH---HHHHHhc--CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 000125899999999986432 2223333 34689999999999999999998865
No 213
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.85 E-value=9.5e-21 Score=128.94 Aligned_cols=146 Identities=21% Similarity=0.180 Sum_probs=96.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc--CCCC---------------------------CccccceeEEEeEEEEEecCcEEEEE
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT--GEFE---------------------------KKYEPTIGVEVHPLDFFTNCGKIRFY 65 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (176)
+|+++|+.++|||||+.+++. |... .......|++.......+......+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 589999999999999999763 2110 00111235566666666666778899
Q ss_pred EEeCCCccccccccccccccccEEEEEEeCCChh-------hhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc-----
Q 030504 66 CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-------TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ----- 133 (176)
Q Consensus 66 ~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-------s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~----- 133 (176)
+|||||+..+...+...+..+|++++|+|++++. ..+....+ ... .....+|+++++||.|+....
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~iiivvNK~Dl~~~~~~~~~ 158 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLA-RTLGVKQLIVAVNKMDDVTVNWSEER 158 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHH-HHcCCCeEEEEEEccccccccccHHH
Confidence 9999999877666666678899999999999852 11222222 222 222347899999999997321
Q ss_pred ---cCHHHHHHHHHc-----CCeEEEeccCCCCChHH
Q 030504 134 ---VKAKQVTFHRKK-----NLQYYEISAKSNYNFEK 162 (176)
Q Consensus 134 ---~~~~~~~~~~~~-----~~~~~~~S~~~~~~v~~ 162 (176)
...+....+... .++++++||++|.|+++
T Consensus 159 ~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~ 195 (219)
T cd01883 159 YDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIE 195 (219)
T ss_pred HHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCc
Confidence 111122233443 36799999999999873
No 214
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.85 E-value=1.1e-19 Score=131.01 Aligned_cols=156 Identities=18% Similarity=0.212 Sum_probs=114.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccc-----------cc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL-----------RD 80 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-----------~~ 80 (176)
..+||+|+|.|++|||||+|+ +.|+......+..|++++.+....+.....+.++||+|..+-... ..
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~-ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~ 255 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINA-ILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL 255 (444)
T ss_pred CceEEEEEeCCCCCchHHHHH-hccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence 469999999999999999999 556666666778889999998888777778899999995432221 22
Q ss_pred cccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc-c-CHHHH-HHHHH----cCCeEEEec
Q 030504 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-V-KAKQV-TFHRK----KNLQYYEIS 153 (176)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~-~-~~~~~-~~~~~----~~~~~~~~S 153 (176)
..+..++++++|+|++.+-+-+... ....+.+. +++++++.||+|+.... . ..+.. ++-+. ...+.+.+|
T Consensus 256 ~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~~~--g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iS 332 (444)
T COG1160 256 KAIERADVVLLVIDATEGISEQDLR-IAGLIEEA--GRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFIS 332 (444)
T ss_pred hHHhhcCEEEEEEECCCCchHHHHH-HHHHHHHc--CCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEE
Confidence 2366799999999999886554442 12223333 89999999999987642 1 11111 11111 246899999
Q ss_pred cCCCCChHHHHHHHHHHH
Q 030504 154 AKSNYNFEKPFLYLARKL 171 (176)
Q Consensus 154 ~~~~~~v~~~~~~l~~~i 171 (176)
|+++.|+.++|+.+.+..
T Consensus 333 A~~~~~i~~l~~~i~~~~ 350 (444)
T COG1160 333 ALTGQGLDKLFEAIKEIY 350 (444)
T ss_pred ecCCCChHHHHHHHHHHH
Confidence 999999999999987754
No 215
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.84 E-value=1.1e-19 Score=139.10 Aligned_cols=153 Identities=12% Similarity=0.045 Sum_probs=102.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc---CCCCCccccceeEEEeEEEEEe-cCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT---GEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
-|+++|+.++|||||++++.+ .++.++.. .|++........ ...+..+.+|||||++.+.......+.++|+++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~--rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~l 79 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKK--RGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHAL 79 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhccc--CCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence 478999999999999999763 22222222 233333322222 112345899999999998777777788999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhcCCCC-EEEEEeCCCCCcccc----CHHHHHHHHHcC---CeEEEeccCCCCChHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV----KAKQVTFHRKKN---LQYYEISAKSNYNFEK 162 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~liv~nK~Dl~~~~~----~~~~~~~~~~~~---~~~~~~S~~~~~~v~~ 162 (176)
+|+|+++...-+.... +..+... +.| +++|+||+|+.+... ..+..+++...+ .+++++|+++|+|+++
T Consensus 80 LVVda~eg~~~qT~eh-l~il~~l--gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~ 156 (614)
T PRK10512 80 LVVACDDGVMAQTREH-LAILQLT--GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA 156 (614)
T ss_pred EEEECCCCCcHHHHHH-HHHHHHc--CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence 9999987533222222 2222222 556 579999999975322 122334444443 6899999999999999
Q ss_pred HHHHHHHHHh
Q 030504 163 PFLYLARKLA 172 (176)
Q Consensus 163 ~~~~l~~~i~ 172 (176)
++++|.....
T Consensus 157 L~~~L~~~~~ 166 (614)
T PRK10512 157 LREHLLQLPE 166 (614)
T ss_pred HHHHHHHhhc
Confidence 9999987544
No 216
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.84 E-value=4.4e-20 Score=125.29 Aligned_cols=154 Identities=18% Similarity=0.160 Sum_probs=100.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCc-----------------cccceeEEEeEEEEEe-----cCcEEEEEEEeCCCc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKK-----------------YEPTIGVEVHPLDFFT-----NCGKIRFYCWDTAGQ 72 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~g~ 72 (176)
+|+++|+.++|||||+++++....... .....|.+........ ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 799999999999999999876432211 0111233332222221 345788999999999
Q ss_pred cccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcc-------cc-------CHHH
Q 030504 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-------QV-------KAKQ 138 (176)
Q Consensus 73 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~-------~~-------~~~~ 138 (176)
+.+......++..+|++++|+|+++..+... ..++..... .+.|+++|+||+|+... .. ..+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~--~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~~ 158 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL--EGLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDEV 158 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECcccCcccccCCHHHHHHHHHHHHHHH
Confidence 9988778888899999999999987665432 233333332 36899999999997521 10 1112
Q ss_pred HHHHHHcCC-------e----EEEeccCCCCChH--------HHHHHHHHHH
Q 030504 139 VTFHRKKNL-------Q----YYEISAKSNYNFE--------KPFLYLARKL 171 (176)
Q Consensus 139 ~~~~~~~~~-------~----~~~~S~~~~~~v~--------~~~~~l~~~i 171 (176)
...+...+. + +++.|++.+.++. ++++.|...+
T Consensus 159 n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~ 210 (213)
T cd04167 159 NNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNI 210 (213)
T ss_pred HHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhC
Confidence 233333322 2 6789999998876 6666666554
No 217
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.84 E-value=9e-20 Score=124.94 Aligned_cols=164 Identities=15% Similarity=0.195 Sum_probs=110.7
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccc------------c
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF------------G 76 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~------------~ 76 (176)
......+|+++|.|++|||||.|.+++.+... .+....++.......+......+.++||||.-.- -
T Consensus 68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~-vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l 146 (379)
T KOG1423|consen 68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSA-VSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL 146 (379)
T ss_pred hcceEEEEEEEcCCCcchhhhhhHhhCCcccc-ccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence 34578899999999999999999977665543 3445556777777777777788999999994211 1
Q ss_pred cccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc-c-------------CHHHHHHH
Q 030504 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-V-------------KAKQVTFH 142 (176)
Q Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~-~-------------~~~~~~~~ 142 (176)
...+..+..+|.+++|+|+++....-.- ......+...+.|-++|+||.|..... . .....++.
T Consensus 147 q~~~~a~q~AD~vvVv~Das~tr~~l~p--~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~ 224 (379)
T KOG1423|consen 147 QNPRDAAQNADCVVVVVDASATRTPLHP--RVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQ 224 (379)
T ss_pred hCHHHHHhhCCEEEEEEeccCCcCccCh--HHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHH
Confidence 1223345689999999999974322211 112223333588999999999976421 0 00011111
Q ss_pred HH-------------cCC----eEEEeccCCCCChHHHHHHHHHHHhcCC
Q 030504 143 RK-------------KNL----QYYEISAKSNYNFEKPFLYLARKLAGST 175 (176)
Q Consensus 143 ~~-------------~~~----~~~~~S~~~~~~v~~~~~~l~~~i~~~~ 175 (176)
.+ .|+ .+|.+||++|+|++++-+||..+....|
T Consensus 225 ~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gp 274 (379)
T KOG1423|consen 225 EKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGP 274 (379)
T ss_pred HHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCC
Confidence 11 223 3899999999999999999998876543
No 218
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.84 E-value=1.2e-19 Score=123.37 Aligned_cols=152 Identities=14% Similarity=0.168 Sum_probs=96.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccc-----------------------ceeEEEeEEE-------------EEec
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEP-----------------------TIGVEVHPLD-------------FFTN 58 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~-------------~~~~ 58 (176)
||+++|+.++|||||+.+|..+.+...... ..|++..... ...+
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 689999999999999999987665432110 0111111000 0112
Q ss_pred CcEEEEEEEeCCCcccccccccccc--ccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCH
Q 030504 59 CGKIRFYCWDTAGQEKFGGLRDGYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA 136 (176)
Q Consensus 59 ~~~~~~~~~D~~g~~~~~~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~ 136 (176)
..+..+.+.||||++++.......+ ..+|++++|+|+..+..-+ ...++..+... +.|+++|+||+|+.++....
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~-d~~~l~~l~~~--~ip~ivvvNK~D~~~~~~~~ 157 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGM-TKEHLGLALAL--NIPVFVVVTKIDLAPANILQ 157 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCEEEEEECccccCHHHHH
Confidence 2345788999999998865444334 3689999999988754322 22333344443 78999999999986533222
Q ss_pred HH----HHHHHH--------------------------cCCeEEEeccCCCCChHHHHHHHHH
Q 030504 137 KQ----VTFHRK--------------------------KNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 137 ~~----~~~~~~--------------------------~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
+. .+..+. ...++|.+|+.+|+|++++.+.|..
T Consensus 158 ~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 158 ETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 11 122221 1248999999999999999887753
No 219
>PRK12736 elongation factor Tu; Reviewed
Probab=99.84 E-value=1.3e-19 Score=132.98 Aligned_cols=161 Identities=15% Similarity=0.082 Sum_probs=110.1
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCC--------------CccccceeEEEeEEEEEecCcEEEEEEEeCCCccc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFE--------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 74 (176)
...++++|+++|+.++|||||+++++..... .......|.+.......++.....+.++||||+++
T Consensus 8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (394)
T PRK12736 8 RSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHAD 87 (394)
T ss_pred cCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHH
Confidence 4568899999999999999999998742110 01111345666666566655667789999999998
Q ss_pred cccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCC-EEEEEeCCCCCcccc-----CHHHHHHHHHcC--
Q 030504 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV-----KAKQVTFHRKKN-- 146 (176)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~liv~nK~Dl~~~~~-----~~~~~~~~~~~~-- 146 (176)
|.......+..+|++++|+|+.....-+... .+..+... +.| +++++||.|+.+... ..+...++...+
T Consensus 88 f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~-~~~~~~~~--g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 164 (394)
T PRK12736 88 YVKNMITGAAQMDGAILVVAATDGPMPQTRE-HILLARQV--GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFP 164 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCchhHHH-HHHHHHHc--CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCC
Confidence 8766666677899999999998753333222 22233333 778 678899999874221 122334444444
Q ss_pred ---CeEEEeccCCCC--------ChHHHHHHHHHHHh
Q 030504 147 ---LQYYEISAKSNY--------NFEKPFLYLARKLA 172 (176)
Q Consensus 147 ---~~~~~~S~~~~~--------~v~~~~~~l~~~i~ 172 (176)
++++.+||++|. ++.++++.+.+.+.
T Consensus 165 ~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 165 GDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred cCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 579999999983 57888888877654
No 220
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.83 E-value=1.9e-19 Score=137.21 Aligned_cols=154 Identities=23% Similarity=0.274 Sum_probs=99.3
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCC----ccccceeEEEeEEEEEe--cCcE-----E-----EEEEEeCCCcc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEK----KYEPTIGVEVHPLDFFT--NCGK-----I-----RFYCWDTAGQE 73 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~-----~-----~~~~~D~~g~~ 73 (176)
..++-.|+++|++++|||||++++.+..... ....+.|.+........ .+.. . .+.+|||||++
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 3455579999999999999999976433221 11223333322221100 0111 1 26899999999
Q ss_pred ccccccccccccccEEEEEEeCCCh---hhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc----------------
Q 030504 74 KFGGLRDGYYIHGQCAIIMFDVTAR---LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---------------- 134 (176)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~---------------- 134 (176)
.|..++...+..+|++++|+|+++. .+++.+. .+.. .+.|+++++||+|+.....
T Consensus 83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~~--~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~ 156 (586)
T PRK04004 83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILKR--RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ 156 (586)
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHHH--cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence 9988888888899999999999973 3333332 2222 3889999999999852100
Q ss_pred --CH-------HHHHHHHH---------------cCCeEEEeccCCCCChHHHHHHHHH
Q 030504 135 --KA-------KQVTFHRK---------------KNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 135 --~~-------~~~~~~~~---------------~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
.. +....... ..++++++||++|+|+++++..+..
T Consensus 157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 00 00011111 1357999999999999999988764
No 221
>PRK12735 elongation factor Tu; Reviewed
Probab=99.83 E-value=2.2e-19 Score=131.82 Aligned_cols=160 Identities=13% Similarity=0.053 Sum_probs=108.1
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcC-----C--C-------CCccccceeEEEeEEEEEecCcEEEEEEEeCCCccc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTG-----E--F-------EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~-----~--~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 74 (176)
...+.++|+++|++++|||||+++++.. . + ........|.+.......++.....+.++||||++.
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence 4568899999999999999999998751 1 0 001112345666665555655666789999999988
Q ss_pred cccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEE-EEEeCCCCCcccc-----CHHHHHHHHHcC--
Q 030504 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNRQV-----KAKQVTFHRKKN-- 146 (176)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~l-iv~nK~Dl~~~~~-----~~~~~~~~~~~~-- 146 (176)
|.......+..+|++++|+|+.+....+.. ..+..+... +.|.+ +++||+|+.+... ..+...++...+
T Consensus 88 f~~~~~~~~~~aD~~llVvda~~g~~~qt~-e~l~~~~~~--gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~ 164 (396)
T PRK12735 88 YVKNMITGAAQMDGAILVVSAADGPMPQTR-EHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchhHH-HHHHHHHHc--CCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence 766666667789999999999875432222 222333332 77865 5799999974221 112334444443
Q ss_pred ---CeEEEeccCCCC----------ChHHHHHHHHHHH
Q 030504 147 ---LQYYEISAKSNY----------NFEKPFLYLARKL 171 (176)
Q Consensus 147 ---~~~~~~S~~~~~----------~v~~~~~~l~~~i 171 (176)
++++++|++++. ++.++++.|...+
T Consensus 165 ~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 165 GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred cCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 679999999984 5677777777654
No 222
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.83 E-value=1.4e-19 Score=132.90 Aligned_cols=148 Identities=14% Similarity=0.071 Sum_probs=100.3
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcC-----CCC---------CccccceeEEEeEEEEEecCcEEEEEEEeCCCcc
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTG-----EFE---------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~-----~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 73 (176)
....+.++|+++|+.++|||||+++++.. +.. .......|.+.......++.....+.+|||||++
T Consensus 7 ~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 7 ERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred cCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH
Confidence 34678999999999999999999998632 100 0111124566666666666667788999999999
Q ss_pred ccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEE-EEEeCCCCCcccc-----CHHHHHHHHHcC-
Q 030504 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNRQV-----KAKQVTFHRKKN- 146 (176)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~l-iv~nK~Dl~~~~~-----~~~~~~~~~~~~- 146 (176)
+|..........+|++++|+|+.++...+... .+..+... +.|.+ +++||+|+.+... ..+..++++..+
T Consensus 87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e-~l~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~ 163 (394)
T TIGR00485 87 DYVKNMITGAAQMDGAILVVSATDGPMPQTRE-HILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHH-HHHHHHHc--CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCC
Confidence 88665555567889999999998753333222 22233332 67755 6899999875321 123345555554
Q ss_pred ----CeEEEeccCCCC
Q 030504 147 ----LQYYEISAKSNY 158 (176)
Q Consensus 147 ----~~~~~~S~~~~~ 158 (176)
++++++|++++.
T Consensus 164 ~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 164 PGDDTPIIRGSALKAL 179 (394)
T ss_pred CccCccEEECcccccc
Confidence 789999999875
No 223
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.83 E-value=2.1e-19 Score=125.28 Aligned_cols=119 Identities=19% Similarity=0.233 Sum_probs=83.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc--CCCCC---------------cccc---ceeEEEeEEEEEecCcEEEEEEEeCCCc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT--GEFEK---------------KYEP---TIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~--~~~~~---------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 72 (176)
..+|+++|++|+|||||+++++. |.... .+.+ ..+.+.......++..++.+.+|||||+
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~ 81 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH 81 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence 36899999999999999999874 21110 0000 1234444555566777889999999999
Q ss_pred cccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc
Q 030504 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (176)
Q Consensus 73 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~ 134 (176)
.++.......++.+|++++|+|+++....+ ...++..... .+.|+++++||+|+.....
T Consensus 82 ~df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~--~~~P~iivvNK~D~~~a~~ 140 (267)
T cd04169 82 EDFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRL--RGIPIITFINKLDREGRDP 140 (267)
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHh--cCCCEEEEEECCccCCCCH
Confidence 988776677788999999999998754322 2233333333 3889999999999876543
No 224
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.82 E-value=1.6e-19 Score=123.93 Aligned_cols=129 Identities=19% Similarity=0.181 Sum_probs=89.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC--------CC-----cc---ccceeEEEeEEEEEecCcEEEEEEEeCCCccccccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF--------EK-----KY---EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL 78 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~--------~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 78 (176)
+|+++|+.|+|||||+++++...- .. .+ ....|.+.......+.....++.+|||||+..+...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 689999999999999999875210 00 00 112344455555555667788999999999998888
Q ss_pred cccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcC
Q 030504 79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN 146 (176)
Q Consensus 79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~ 146 (176)
+..+++.+|++++|+|+++.... ....++..+... +.|+++++||.|+.......-..++...++
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~--~~P~iivvNK~D~~~a~~~~~~~~i~~~~~ 145 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL--NIPTIIFVNKIDRAGADLEKVYQEIKEKLS 145 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc--CCCEEEEEECccccCCCHHHHHHHHHHHHC
Confidence 88889999999999999986543 233444444443 899999999999986544332333333343
No 225
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.82 E-value=4.9e-20 Score=135.45 Aligned_cols=163 Identities=17% Similarity=0.204 Sum_probs=123.2
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccccccccccc
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 87 (176)
...+..+||+++|..|+|||||+-.++...+.+...+-.. ...+...+....+...+.|++..+..+.....-++++|
T Consensus 4 ~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~--~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~ 81 (625)
T KOG1707|consen 4 DETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP--RILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKAD 81 (625)
T ss_pred ccCccceEEEEECCCCccHHHHHHHHHhhhccccccccCC--ccccCCccCcCcCceEEEecccccchhHHHHHHHhhcC
Confidence 3456789999999999999999999999888776554331 22222334445566889999876655555566789999
Q ss_pred EEEEEEeCCChhhhhhHH-HHHHHHhhhc---CCCCEEEEEeCCCCCccccC--HH-HHHHHHHcC--CeEEEeccCCCC
Q 030504 88 CAIIMFDVTARLTYKNVP-TWHRDLCRVC---ENIPIVLCGNKVDVKNRQVK--AK-QVTFHRKKN--LQYYEISAKSNY 158 (176)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~-~~~~~~~~~~---~~~p~liv~nK~Dl~~~~~~--~~-~~~~~~~~~--~~~~~~S~~~~~ 158 (176)
+++++|+++++++++.+. +|+..+.+.. .+.|+|+|+||+|+...... +. ...+..++. -.+++|||++..
T Consensus 82 vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~ 161 (625)
T KOG1707|consen 82 VICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLA 161 (625)
T ss_pred EEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhh
Confidence 999999999999999886 7999998887 68999999999998753332 22 223333322 257999999999
Q ss_pred ChHHHHHHHHHHHh
Q 030504 159 NFEKPFLYLARKLA 172 (176)
Q Consensus 159 ~v~~~~~~l~~~i~ 172 (176)
++.|+|...-+++.
T Consensus 162 n~~e~fYyaqKaVi 175 (625)
T KOG1707|consen 162 NVSELFYYAQKAVI 175 (625)
T ss_pred hhHhhhhhhhheee
Confidence 99999998777654
No 226
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.82 E-value=4.2e-19 Score=133.38 Aligned_cols=156 Identities=15% Similarity=0.115 Sum_probs=117.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccc------cccccccc--
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF------GGLRDGYY-- 83 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~------~~~~~~~~-- 83 (176)
+..+|+++|.||+|||||.|++.+.+..- .-..|+|..+++.....++..+++.|+||.-.. +...+.++
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~V--gNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~ 79 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKV--GNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLE 79 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCcee--cCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence 34679999999999999999966544322 234577888888877777777999999994322 22333343
Q ss_pred ccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc-cccCHHHHHHHHHcCCeEEEeccCCCCChHH
Q 030504 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
...|+++-|+|+++.+.-- .+.-++.+. +.|++++.|+.|... +....+..++.+..|++++++||++|.|+++
T Consensus 80 ~~~D~ivnVvDAtnLeRnL---yltlQLlE~--g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~ 154 (653)
T COG0370 80 GKPDLIVNVVDATNLERNL---YLTLQLLEL--GIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEE 154 (653)
T ss_pred CCCCEEEEEcccchHHHHH---HHHHHHHHc--CCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHHH
Confidence 3569999999999875221 222334444 999999999999875 5566778899999999999999999999999
Q ss_pred HHHHHHHHHhcC
Q 030504 163 PFLYLARKLAGS 174 (176)
Q Consensus 163 ~~~~l~~~i~~~ 174 (176)
+.+.+.+....+
T Consensus 155 l~~~i~~~~~~~ 166 (653)
T COG0370 155 LKRAIIELAESK 166 (653)
T ss_pred HHHHHHHhcccc
Confidence 999988755443
No 227
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.81 E-value=2.7e-18 Score=111.83 Aligned_cols=159 Identities=14% Similarity=0.111 Sum_probs=110.1
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCc----------ccccccc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ----------EKFGGLR 79 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~----------~~~~~~~ 79 (176)
+....-|+++|.++||||||+|.+.+.+-....+.|.|.|...-.+..++. +.+.|.||. +......
T Consensus 21 ~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i 97 (200)
T COG0218 21 EDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLI 97 (200)
T ss_pred CCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHH
Confidence 345567999999999999999998876644455667787777777766654 788999992 2233334
Q ss_pred ccccc---cccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHH-HHHHH----cCCe--E
Q 030504 80 DGYYI---HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRK----KNLQ--Y 149 (176)
Q Consensus 80 ~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~-~~~~~----~~~~--~ 149 (176)
..|++ +..++++++|+..+...... .+++.+.+. +.|+++++||+|........... ..++. ..+. +
T Consensus 98 ~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~~--~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~ 174 (200)
T COG0218 98 EEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLEL--GIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWV 174 (200)
T ss_pred HHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHHc--CCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceE
Confidence 44443 35788999998765433222 334444444 99999999999987755444322 22222 2233 8
Q ss_pred EEeccCCCCChHHHHHHHHHHHhcC
Q 030504 150 YEISAKSNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 150 ~~~S~~~~~~v~~~~~~l~~~i~~~ 174 (176)
+..|+.++.|++++...|.+.+.+.
T Consensus 175 ~~~ss~~k~Gi~~l~~~i~~~~~~~ 199 (200)
T COG0218 175 VLFSSLKKKGIDELKAKILEWLKEA 199 (200)
T ss_pred EEEecccccCHHHHHHHHHHHhhcc
Confidence 8899999999999999998887653
No 228
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.81 E-value=9.6e-19 Score=131.84 Aligned_cols=117 Identities=19% Similarity=0.200 Sum_probs=83.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc--CCCC---------------C---ccccceeEEEeEEEEEecCcEEEEEEEeCCC
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT--GEFE---------------K---KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~--~~~~---------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 71 (176)
...+|+|+|++++|||||+++++. |... . ......|.+.......++...+.+.+|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 467999999999999999999863 2110 0 0011224445555555666778899999999
Q ss_pred ccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc
Q 030504 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (176)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~ 131 (176)
++.+.......++.+|++++|+|+++.... ....++..... .+.|+++++||+|+..
T Consensus 89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~--~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 89 HEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL--RDTPIFTFINKLDRDG 145 (526)
T ss_pred chhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh--cCCCEEEEEECCcccc
Confidence 998887777788999999999999875422 22333444333 3899999999999764
No 229
>CHL00071 tufA elongation factor Tu
Probab=99.80 E-value=2.1e-18 Score=127.18 Aligned_cols=148 Identities=15% Similarity=0.070 Sum_probs=100.7
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCC--------------CCccccceeEEEeEEEEEecCcEEEEEEEeCCCccc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEF--------------EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 74 (176)
.+.+.++|+++|++++|||||+++++.... ........|++.......++.+...+.+.||||+..
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~ 87 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH
Confidence 457889999999999999999999875211 001111245666655555655666788999999988
Q ss_pred cccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCC-EEEEEeCCCCCcccc-----CHHHHHHHHHcC--
Q 030504 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV-----KAKQVTFHRKKN-- 146 (176)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~liv~nK~Dl~~~~~-----~~~~~~~~~~~~-- 146 (176)
+.......+..+|++++|+|+.....-+... .+..+... +.| +++++||.|+.+... ..+...+++..+
T Consensus 88 ~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~-~~~~~~~~--g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~ 164 (409)
T CHL00071 88 YVKNMITGAAQMDGAILVVSAADGPMPQTKE-HILLAKQV--GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFP 164 (409)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCcHHHHH-HHHHHHHc--CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 7666666678899999999998754323222 22333333 778 678899999975322 123334444433
Q ss_pred ---CeEEEeccCCCCC
Q 030504 147 ---LQYYEISAKSNYN 159 (176)
Q Consensus 147 ---~~~~~~S~~~~~~ 159 (176)
++++.+|+.+|.+
T Consensus 165 ~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 165 GDDIPIVSGSALLALE 180 (409)
T ss_pred CCcceEEEcchhhccc
Confidence 6899999999874
No 230
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.80 E-value=3.3e-18 Score=115.96 Aligned_cols=157 Identities=14% Similarity=0.193 Sum_probs=103.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEe-cCcEEEEEEEeCCCcccccc-----ccccccccccE
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGG-----LRDGYYIHGQC 88 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~-----~~~~~~~~~~~ 88 (176)
||+++|+.+|||||+.+-+..+..+.+ ....|.|...-...+ ....+.+.+||.||+..+.. .....++++.+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~d-T~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRD-TLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGG-GGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchh-ccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 799999999999999998665544333 344444444333333 24556899999999875533 35566889999
Q ss_pred EEEEEeCCChh---hhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCH--------HHHHHHHHcC---CeEEEecc
Q 030504 89 AIIMFDVTARL---TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA--------KQVTFHRKKN---LQYYEISA 154 (176)
Q Consensus 89 ~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~--------~~~~~~~~~~---~~~~~~S~ 154 (176)
+|||+|+.+.+ .+..+...+..+.+..|+..+.++.+|.|+..+.... ...+.+...+ +.++.||.
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI 159 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI 159 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence 99999999443 3444455666677777999999999999987533222 2234444555 78999998
Q ss_pred CCCCChHHHHHHHHHHHhc
Q 030504 155 KSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 155 ~~~~~v~~~~~~l~~~i~~ 173 (176)
.+ +.+-++|..+++.+..
T Consensus 160 ~D-~Sly~A~S~Ivq~LiP 177 (232)
T PF04670_consen 160 WD-ESLYEAWSKIVQKLIP 177 (232)
T ss_dssp TS-THHHHHHHHHHHTTST
T ss_pred cC-cHHHHHHHHHHHHHcc
Confidence 88 6999999999987653
No 231
>PLN03126 Elongation factor Tu; Provisional
Probab=99.80 E-value=1.1e-18 Score=130.07 Aligned_cols=148 Identities=14% Similarity=0.072 Sum_probs=102.3
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcC------CCCC--------ccccceeEEEeEEEEEecCcEEEEEEEeCCCccc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTG------EFEK--------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 74 (176)
...+.++|+++|++++|||||+++++.. .... ......|.+.+.....++.....+.++|+||++.
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~ 156 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD 156 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence 4678999999999999999999998741 1111 1122345666665555555667889999999999
Q ss_pred cccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCC-EEEEEeCCCCCcccc-----CHHHHHHHHHc---
Q 030504 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV-----KAKQVTFHRKK--- 145 (176)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~liv~nK~Dl~~~~~-----~~~~~~~~~~~--- 145 (176)
|.......+..+|++++|+|+.+...-+....+ ..+... ++| +++++||.|+.+... ..+...+.+..
T Consensus 157 f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~-~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~ 233 (478)
T PLN03126 157 YVKNMITGAAQMDGAILVVSGADGPMPQTKEHI-LLAKQV--GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFP 233 (478)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHH-HHHHHc--CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCC
Confidence 877667777889999999999976543333333 333333 778 778899999975221 11233444443
Q ss_pred --CCeEEEeccCCCCC
Q 030504 146 --NLQYYEISAKSNYN 159 (176)
Q Consensus 146 --~~~~~~~S~~~~~~ 159 (176)
.++++.+|+.++.+
T Consensus 234 ~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 234 GDDIPIISGSALLALE 249 (478)
T ss_pred cCcceEEEEEcccccc
Confidence 46799999998753
No 232
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.79 E-value=1.7e-18 Score=127.53 Aligned_cols=147 Identities=17% Similarity=0.207 Sum_probs=97.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC--CCCC-------------c----------------cccceeEEEeEEEEEecCcEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTG--EFEK-------------K----------------YEPTIGVEVHPLDFFTNCGKI 62 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~--~~~~-------------~----------------~~~~~~~~~~~~~~~~~~~~~ 62 (176)
+||+++|+.++|||||+.+++.. .... . .....|.+.+.....+.....
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999998631 1110 0 001123445555555555667
Q ss_pred EEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccC------H
Q 030504 63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK------A 136 (176)
Q Consensus 63 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~------~ 136 (176)
.+.++||||++.|.......+..+|++++|+|+..+..-+....+. .+ ......++++++||.|+.+.... .
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~-~~-~~~~~~~iivviNK~D~~~~~~~~~~~i~~ 158 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY-IA-SLLGIRHVVLAVNKMDLVDYDEEVFENIKK 158 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH-HH-HHcCCCcEEEEEEecccccchHHHHHHHHH
Confidence 8999999999988665556678999999999998765444333332 12 22224468899999998742211 1
Q ss_pred HHHHHHHHcC---CeEEEeccCCCCChHH
Q 030504 137 KQVTFHRKKN---LQYYEISAKSNYNFEK 162 (176)
Q Consensus 137 ~~~~~~~~~~---~~~~~~S~~~~~~v~~ 162 (176)
+...+.+..+ ++++++||++|+|+.+
T Consensus 159 ~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 159 DYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 1223334433 4699999999999875
No 233
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.79 E-value=3.5e-18 Score=118.42 Aligned_cols=163 Identities=15% Similarity=0.157 Sum_probs=115.4
Q ss_pred CCCCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcc-----ccccccc
Q 030504 6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE-----KFGGLRD 80 (176)
Q Consensus 6 ~~~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-----~~~~~~~ 80 (176)
-+..++....|+|.|.||||||||++.+..... +..+..-+|.......++.....++++||||.= +......
T Consensus 161 LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Akp--EvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~ 238 (346)
T COG1084 161 LPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKP--EVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIER 238 (346)
T ss_pred CCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCC--ccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHH
Confidence 456777888999999999999999999664443 234444445555556667677889999999931 1111111
Q ss_pred ----cccccccEEEEEEeCCCh--hhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHH-HHHHcCCeEEEec
Q 030504 81 ----GYYIHGQCAIIMFDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQYYEIS 153 (176)
Q Consensus 81 ----~~~~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~-~~~~~~~~~~~~S 153 (176)
+.-.-.++++|++|++.. .+.+...+++..+...+. .|+++|.||.|..+.....+... .....+.....++
T Consensus 239 qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~-~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~~~~~ 317 (346)
T COG1084 239 QAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK-APIVVVINKIDIADEEKLEEIEASVLEEGGEEPLKIS 317 (346)
T ss_pred HHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC-CCeEEEEecccccchhHHHHHHHHHHhhcccccccee
Confidence 112235899999999954 466777788888888765 89999999999987655555443 3334445578889
Q ss_pred cCCCCChHHHHHHHHHHH
Q 030504 154 AKSNYNFEKPFLYLARKL 171 (176)
Q Consensus 154 ~~~~~~v~~~~~~l~~~i 171 (176)
+..+.+++.+-..+....
T Consensus 318 ~~~~~~~d~~~~~v~~~a 335 (346)
T COG1084 318 ATKGCGLDKLREEVRKTA 335 (346)
T ss_pred eeehhhHHHHHHHHHHHh
Confidence 999999888777766653
No 234
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.79 E-value=1.9e-18 Score=128.22 Aligned_cols=151 Identities=17% Similarity=0.254 Sum_probs=105.3
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhc--CCCCC---------------------------ccccceeEEEeEEEEEecC
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEK---------------------------KYEPTIGVEVHPLDFFTNC 59 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~ 59 (176)
...++++|+++|+.++|||||+.+++. |.... ......|.+.......++.
T Consensus 3 ~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~ 82 (447)
T PLN00043 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET 82 (447)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC
Confidence 357889999999999999999998764 21100 0011234555555556667
Q ss_pred cEEEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhh-------hHHHHHHHHhhhcCCCC-EEEEEeCCCCCc
Q 030504 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK-------NVPTWHRDLCRVCENIP-IVLCGNKVDVKN 131 (176)
Q Consensus 60 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~p-~liv~nK~Dl~~ 131 (176)
....+.++|+|||++|.......+..+|++++|+|+++.. ++ .....+...... +.| +++++||.|+..
T Consensus 83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~-~e~g~~~~~qT~eh~~~~~~~--gi~~iIV~vNKmD~~~ 159 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGG-FEAGISKDGQTREHALLAFTL--GVKQMICCCNKMDATT 159 (447)
T ss_pred CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCc-eecccCCCchHHHHHHHHHHc--CCCcEEEEEEcccCCc
Confidence 7788999999999999988888899999999999998742 21 222222222222 664 788899999863
Q ss_pred cc--------cCHHHHHHHHHcC-----CeEEEeccCCCCChHH
Q 030504 132 RQ--------VKAKQVTFHRKKN-----LQYYEISAKSNYNFEK 162 (176)
Q Consensus 132 ~~--------~~~~~~~~~~~~~-----~~~~~~S~~~~~~v~~ 162 (176)
.. ...+...++++.+ ++++++|+++|+|+.+
T Consensus 160 ~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 160 PKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 11 2334456666655 6799999999999853
No 235
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.79 E-value=5.5e-18 Score=113.64 Aligned_cols=154 Identities=16% Similarity=0.187 Sum_probs=94.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeE---EEeEEEEEecCcEEEEEEEeCCCcccccccccc-----ccc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGV---EVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDG-----YYI 84 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~-----~~~ 84 (176)
++||+++|.+|+|||||+|.+.+...........+. +.....+.. .....+.+|||||.......... .+.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 479999999999999999998765443322222221 111111111 12336899999997543222222 256
Q ss_pred cccEEEEEEeCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCcccc-------------CHHHHHH----HHHc-
Q 030504 85 HGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQV-------------KAKQVTF----HRKK- 145 (176)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~~-------------~~~~~~~----~~~~- 145 (176)
++|+++++.+. .+.... .++..+.+. +.|+++|+||+|+..... .++..+. ....
T Consensus 80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 80 EYDFFIIISST----RFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred CcCEEEEEeCC----CCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 78988887432 223232 455555554 789999999999843111 1111111 2221
Q ss_pred --CCeEEEeccC--CCCChHHHHHHHHHHHhc
Q 030504 146 --NLQYYEISAK--SNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 146 --~~~~~~~S~~--~~~~v~~~~~~l~~~i~~ 173 (176)
...+|.+|+. .+.|+..+.+.+...+.+
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 2478999998 578999999999988764
No 236
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.79 E-value=1.6e-18 Score=129.60 Aligned_cols=152 Identities=17% Similarity=0.189 Sum_probs=98.4
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCC--CCC------------cc-----------------ccceeEEEeEEEEEec
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGE--FEK------------KY-----------------EPTIGVEVHPLDFFTN 58 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~--~~~------------~~-----------------~~~~~~~~~~~~~~~~ 58 (176)
..+.+||+++|+.++|||||+.+++... ... .. ....|++.......+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 4678999999999999999999987421 110 00 0012334444444455
Q ss_pred CcEEEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc--CH
Q 030504 59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KA 136 (176)
Q Consensus 59 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~--~~ 136 (176)
.....+.++||||++.+.......+..+|++++|+|+.....-+....+. .+ ......|+++++||.|+.+... ..
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~-l~-~~lg~~~iIvvvNKiD~~~~~~~~~~ 181 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSF-IA-TLLGIKHLVVAVNKMDLVDYSEEVFE 181 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHH-HH-HHhCCCceEEEEEeeccccchhHHHH
Confidence 56678899999999887655555568999999999998764333322222 11 1112357899999999974221 11
Q ss_pred H----HHHHHHHc----CCeEEEeccCCCCChHHH
Q 030504 137 K----QVTFHRKK----NLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 137 ~----~~~~~~~~----~~~~~~~S~~~~~~v~~~ 163 (176)
+ ...+.... ..+++++||++|+|+.++
T Consensus 182 ~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 182 RIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 1 11223332 368999999999998764
No 237
>PRK13351 elongation factor G; Reviewed
Probab=99.79 E-value=3.1e-18 Score=133.79 Aligned_cols=118 Identities=21% Similarity=0.243 Sum_probs=85.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCC-------------CCccc---cceeEEEeEEEEEecCcEEEEEEEeCCCccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF-------------EKKYE---PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~-------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 74 (176)
....||+|+|+.++|||||+++++...- ...+. ...+.+..............+.+|||||+.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 3568999999999999999999874211 00000 0123333333334444677899999999998
Q ss_pred cccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc
Q 030504 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (176)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~ 131 (176)
+...+..+++.+|++++|+|+++....+....| ..+... +.|+++++||+|+..
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~~--~~p~iiviNK~D~~~ 139 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADRY--GIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHhc--CCCEEEEEECCCCCC
Confidence 888888899999999999999987665544444 333333 889999999999875
No 238
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.78 E-value=7.9e-18 Score=117.92 Aligned_cols=140 Identities=17% Similarity=0.278 Sum_probs=90.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCc----------cccceeEEEeEEEEEecCcEEEEEEEeCCCccccc------
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKK----------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG------ 76 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------ 76 (176)
.++|+++|.+|+|||||+|+++....... ..++.+.+........++..+.+.+|||||.....
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 68999999999999999999987765432 24444445455555556677899999999943221
Q ss_pred --------------------cccccccc--cccEEEEEEeCCChhhhhhH-HHHHHHHhhhcCCCCEEEEEeCCCCCccc
Q 030504 77 --------------------GLRDGYYI--HGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133 (176)
Q Consensus 77 --------------------~~~~~~~~--~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~liv~nK~Dl~~~~ 133 (176)
......+. ++|+++|+++.+.. ..... ...+..+. ...|+++|+||+|+....
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~---~~v~vi~VinK~D~l~~~ 159 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS---KRVNIIPVIAKADTLTPE 159 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh---ccCCEEEEEECCCcCCHH
Confidence 11112333 46778888876642 22222 22333333 378999999999985422
Q ss_pred ----cCHHHHHHHHHcCCeEEEeccCC
Q 030504 134 ----VKAKQVTFHRKKNLQYYEISAKS 156 (176)
Q Consensus 134 ----~~~~~~~~~~~~~~~~~~~S~~~ 156 (176)
......+.+..+++.+|......
T Consensus 160 e~~~~k~~i~~~l~~~~i~~~~~~~~~ 186 (276)
T cd01850 160 ELKEFKQRIMEDIEEHNIKIYKFPEDE 186 (276)
T ss_pred HHHHHHHHHHHHHHHcCCceECCCCCc
Confidence 23335577777888888776543
No 239
>PRK00049 elongation factor Tu; Reviewed
Probab=99.78 E-value=1.2e-17 Score=122.78 Aligned_cols=160 Identities=13% Similarity=0.054 Sum_probs=107.1
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCC--------------CccccceeEEEeEEEEEecCcEEEEEEEeCCCccc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFE--------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 74 (176)
...+.++|+++|+.++|||||+++++..... .......|.+.......+......+.+.||||+.+
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH
Confidence 4568899999999999999999998752110 01112345666666566655667788999999988
Q ss_pred cccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEE-EEEeCCCCCcccc-----CHHHHHHHHHc---
Q 030504 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNRQV-----KAKQVTFHRKK--- 145 (176)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~l-iv~nK~Dl~~~~~-----~~~~~~~~~~~--- 145 (176)
+.......+..+|++++|+|+..+..-+.. ..+..+... +.|.+ +++||.|+.+... ..+...+....
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g~~~qt~-~~~~~~~~~--g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~ 164 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADGPMPQTR-EHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchHHH-HHHHHHHHc--CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence 766666667899999999999875432222 223333333 78876 5799999974221 11223344333
Q ss_pred --CCeEEEeccCCCC----------ChHHHHHHHHHHH
Q 030504 146 --NLQYYEISAKSNY----------NFEKPFLYLARKL 171 (176)
Q Consensus 146 --~~~~~~~S~~~~~----------~v~~~~~~l~~~i 171 (176)
.++++.+|++++. ++..+++.|...+
T Consensus 165 ~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 165 GDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred ccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 3689999999875 4566776666543
No 240
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.78 E-value=4.5e-18 Score=119.25 Aligned_cols=133 Identities=16% Similarity=0.186 Sum_probs=86.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC--Cc--cc--c----------ceeEEEeEEEEEecCcEEEEEEEeCCCccccccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFE--KK--YE--P----------TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL 78 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~--~~--~~--~----------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 78 (176)
+|+++|++|+|||||+++++..... .. .. . ..+.+..............+.+|||||+..+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 5899999999999999997642111 00 00 0 0122222233334445678899999999887777
Q ss_pred cccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEE
Q 030504 79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYY 150 (176)
Q Consensus 79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 150 (176)
+...+..+|++++|+|+++.........| ..+... +.|.++++||.|+...........+....+..++
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~~--~~p~iivvNK~D~~~~~~~~~~~~l~~~~~~~~~ 149 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLW-EFADEA--GIPRIIFINKMDRERADFDKTLAALQEAFGRPVV 149 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHHc--CCCEEEEEECCccCCCCHHHHHHHHHHHhCCCeE
Confidence 78888999999999999986544333222 333333 7899999999999875433333333334444433
No 241
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.77 E-value=1.2e-17 Score=124.06 Aligned_cols=150 Identities=20% Similarity=0.227 Sum_probs=102.7
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhc--CCCCC---------------------------ccccceeEEEeEEEEEecCc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEK---------------------------KYEPTIGVEVHPLDFFTNCG 60 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 60 (176)
..++++|+++|+.++|||||+.+++. |.... ......|.+.......++..
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 46789999999999999999999864 21110 00112355555555566677
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEeCCChhh-------hhhHHHHHHHHhhhcCCCC-EEEEEeCCCCCc-
Q 030504 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT-------YKNVPTWHRDLCRVCENIP-IVLCGNKVDVKN- 131 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s-------~~~~~~~~~~~~~~~~~~p-~liv~nK~Dl~~- 131 (176)
...+.++|+|||++|.......+..+|++++|+|++.+.. -+...+| ..+... +.| +++++||.|...
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~-~~~~~~--gi~~iiv~vNKmD~~~~ 160 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHA-LLAFTL--GVKQMIVCINKMDDKTV 160 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHH-HHHHHc--CCCeEEEEEEccccccc
Confidence 7889999999999988777777889999999999987531 1222232 233333 666 678999999532
Q ss_pred -------cccCHHHHHHHHHc-----CCeEEEeccCCCCChHH
Q 030504 132 -------RQVKAKQVTFHRKK-----NLQYYEISAKSNYNFEK 162 (176)
Q Consensus 132 -------~~~~~~~~~~~~~~-----~~~~~~~S~~~~~~v~~ 162 (176)
+....+..+++... .++++.+|+.+|+|+.+
T Consensus 161 ~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 161 NYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 11122333444443 36799999999999864
No 242
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.77 E-value=6e-18 Score=118.09 Aligned_cols=116 Identities=24% Similarity=0.239 Sum_probs=83.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc--CCCCC--------------ccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT--GEFEK--------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL 78 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~--~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 78 (176)
||+++|++++|||||+++++. |.... ......|++.......+......+.++||||+..+...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 689999999999999999863 21110 00112355555555556666788999999999888888
Q ss_pred cccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc
Q 030504 79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133 (176)
Q Consensus 79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~ 133 (176)
+...++.+|++++|+|+.+...-+. ...+..+... ++|+++++||.|+.+..
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~~--~~p~ivviNK~D~~~a~ 132 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADRY--NVPRIAFVNKMDRTGAD 132 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHHc--CCCEEEEEECCCCCCCC
Confidence 8888999999999999987543222 2233333333 78999999999997643
No 243
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=7.7e-18 Score=123.34 Aligned_cols=159 Identities=17% Similarity=0.230 Sum_probs=123.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc--CCCCC-----------ccccceeEEEeEEEEEe---cCcEEEEEEEeCCCcccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT--GEFEK-----------KYEPTIGVEVHPLDFFT---NCGKIRFYCWDTAGQEKF 75 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~--~~~~~-----------~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~g~~~~ 75 (176)
+-.|+.|+-+...|||||..+++. |--.. ......|+|....+... +++.+.+.++|||||..|
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDF 138 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDF 138 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccc
Confidence 456899999999999999999874 31110 11123455555544332 356699999999999999
Q ss_pred ccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCH---HHHHHHHHcCCeEEEe
Q 030504 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---KQVTFHRKKNLQYYEI 152 (176)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~~~ 152 (176)
.......+.-++++++|+|++.+..-+....++..+.. +..++.|+||.|++...+.. +..+++.....+.+.+
T Consensus 139 s~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~---~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~v 215 (650)
T KOG0462|consen 139 SGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA---GLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIYV 215 (650)
T ss_pred cceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc---CCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEEE
Confidence 99888889999999999999998777777766655544 88999999999999766544 3445566666789999
Q ss_pred ccCCCCChHHHHHHHHHHHhc
Q 030504 153 SAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 153 S~~~~~~v~~~~~~l~~~i~~ 173 (176)
||++|.|+++++..+++.+.-
T Consensus 216 SAK~G~~v~~lL~AII~rVPp 236 (650)
T KOG0462|consen 216 SAKTGLNVEELLEAIIRRVPP 236 (650)
T ss_pred EeccCccHHHHHHHHHhhCCC
Confidence 999999999999999998764
No 244
>PLN03127 Elongation factor Tu; Provisional
Probab=99.76 E-value=3.4e-17 Score=121.47 Aligned_cols=161 Identities=16% Similarity=0.094 Sum_probs=104.9
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhc-----CCCC---------CccccceeEEEeEEEEEecCcEEEEEEEeCCCccc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLT-----GEFE---------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~-----~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 74 (176)
...++++|+++|+.++|||||++++.. |... .......|++.......++.....+.+.||||++.
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc
Confidence 456889999999999999999999752 1110 00112245666666666666667889999999988
Q ss_pred cccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCC-EEEEEeCCCCCccccC-H----HHHHHHHHc---
Q 030504 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVK-A----KQVTFHRKK--- 145 (176)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~liv~nK~Dl~~~~~~-~----~~~~~~~~~--- 145 (176)
+.......+..+|++++|+|+.+...-+. ...+..+... +.| +++++||+|+.+.... . +..++....
T Consensus 137 f~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~~--gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~ 213 (447)
T PLN03127 137 YVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQV--GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFP 213 (447)
T ss_pred hHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc--CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 76655555677999999999987543222 2222333333 788 5788999999742211 1 122233222
Q ss_pred --CCeEEEeccC---CCCC-------hHHHHHHHHHHHh
Q 030504 146 --NLQYYEISAK---SNYN-------FEKPFLYLARKLA 172 (176)
Q Consensus 146 --~~~~~~~S~~---~~~~-------v~~~~~~l~~~i~ 172 (176)
.++++.+|+. ++.| +.++++.+.+.+.
T Consensus 214 ~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 214 GDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred CCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 3678888876 4555 6778888776653
No 245
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.76 E-value=7.7e-18 Score=130.34 Aligned_cols=152 Identities=19% Similarity=0.159 Sum_probs=98.1
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCC--CCC------------ccc-----------------cceeEEEeEEEEEe
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGE--FEK------------KYE-----------------PTIGVEVHPLDFFT 57 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~--~~~------------~~~-----------------~~~~~~~~~~~~~~ 57 (176)
...+.++|+++|++++|||||+++++... ... ... ...|.+.......+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 34577999999999999999999987421 110 000 01233444444444
Q ss_pred cCcEEEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc--C
Q 030504 58 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--K 135 (176)
Q Consensus 58 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~--~ 135 (176)
+.....+.++||||++.+.......+..+|++++|+|+..+..-+....+. .+... ...|+++++||+|+.+... .
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~-~~~~~-~~~~iivvvNK~D~~~~~~~~~ 177 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSF-IASLL-GIRHVVLAVNKMDLVDYDQEVF 177 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHH-HHHHh-CCCeEEEEEEecccccchhHHH
Confidence 555667889999999887655555678999999999998764333333222 22222 2357889999999964111 1
Q ss_pred ----HHHHHHHHHcC---CeEEEeccCCCCChHH
Q 030504 136 ----AKQVTFHRKKN---LQYYEISAKSNYNFEK 162 (176)
Q Consensus 136 ----~~~~~~~~~~~---~~~~~~S~~~~~~v~~ 162 (176)
.+..++.+..+ .+++++||++|.|+.+
T Consensus 178 ~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 178 DEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 11223334444 4699999999999874
No 246
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.76 E-value=5.5e-18 Score=114.90 Aligned_cols=113 Identities=19% Similarity=0.239 Sum_probs=78.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC--CCcc------------ccceeEEEeEE--EEEec--------CcEEEEEEEeCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF--EKKY------------EPTIGVEVHPL--DFFTN--------CGKIRFYCWDTA 70 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~--~~~~------------~~~~~~~~~~~--~~~~~--------~~~~~~~~~D~~ 70 (176)
+|+++|+.++|||||+.+++...- .... ....|.+.... ....+ ++.+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 799999999999999999874321 1000 00112222211 12222 347889999999
Q ss_pred CccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCC
Q 030504 71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (176)
Q Consensus 71 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~ 130 (176)
|++.+.......++.+|++++|+|+.++.+.+....+ ..... .+.|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l-~~~~~--~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVL-RQALK--ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHH-HHHHH--cCCCEEEEEECCCcc
Confidence 9999998888899999999999999987655543322 22222 278999999999976
No 247
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.76 E-value=3.4e-18 Score=111.31 Aligned_cols=116 Identities=17% Similarity=0.283 Sum_probs=70.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEe-cCcEEEEEEEeCCCcccccccccc---ccccccEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDG---YYIHGQCA 89 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~---~~~~~~~~ 89 (176)
-.|+++|+.|+|||+|..++..+.....+.+... .. .... ......+.++|+|||++.+..... +...+.++
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~-n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMEN-NI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B---SSE-EE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccC-Cc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 4689999999999999999999876555443311 11 1111 223446889999999998764444 47789999
Q ss_pred EEEEeCCC-hhhhhhHHHH-HHHHhhh---cCCCCEEEEEeCCCCCccc
Q 030504 90 IIMFDVTA-RLTYKNVPTW-HRDLCRV---CENIPIVLCGNKVDVKNRQ 133 (176)
Q Consensus 90 i~v~d~~~-~~s~~~~~~~-~~~~~~~---~~~~p~liv~nK~Dl~~~~ 133 (176)
|||+|.+. .........+ +..+... ....|++|+.||+|+....
T Consensus 80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 99999984 3444444433 3333222 2578999999999987644
No 248
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.75 E-value=7e-17 Score=111.37 Aligned_cols=153 Identities=15% Similarity=0.144 Sum_probs=100.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCc-EEEEEEEeCCCcccccccccc-------ccccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFGGLRDG-------YYIHG 86 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~~~~~~-------~~~~~ 86 (176)
.+.++|.|++|||||++++..-+. ...+..-+|.......+... ...+.+=|.||.-+...+.+. .+.++
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKp--kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKP--KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCC--cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhh
Confidence 488999999999999999775443 11222222333222222212 223888999996544443333 36689
Q ss_pred cEEEEEEeCCCh---hhhhhHHHHHHHH---hhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcC-CeEEEeccCCCCC
Q 030504 87 QCAIIMFDVTAR---LTYKNVPTWHRDL---CRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN-LQYYEISAKSNYN 159 (176)
Q Consensus 87 ~~~i~v~d~~~~---~s~~~~~~~~~~~---~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~ 159 (176)
+..+||+|++.. ..++.+..+...+ .+...++|.++|+||.|++..+.. ...++++... -.++++||++++|
T Consensus 276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~-~l~~L~~~lq~~~V~pvsA~~~eg 354 (366)
T KOG1489|consen 276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKN-LLSSLAKRLQNPHVVPVSAKSGEG 354 (366)
T ss_pred ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHH-HHHHHHHHcCCCcEEEeeeccccc
Confidence 999999999987 5555555444443 444578999999999999732211 1234555544 3499999999999
Q ss_pred hHHHHHHHHHH
Q 030504 160 FEKPFLYLARK 170 (176)
Q Consensus 160 v~~~~~~l~~~ 170 (176)
+.++++.|.+.
T Consensus 355 l~~ll~~lr~~ 365 (366)
T KOG1489|consen 355 LEELLNGLREL 365 (366)
T ss_pred hHHHHHHHhhc
Confidence 99999887653
No 249
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.74 E-value=9.8e-17 Score=107.59 Aligned_cols=159 Identities=12% Similarity=0.010 Sum_probs=97.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc--------c---cccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--------L---RDGY 82 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~---~~~~ 82 (176)
++|+++|.+|+|||||+|.+++...........+.+..+........+..+.++||||...... + ....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 4899999999999999999876543222111222333333332223456789999999654321 0 1122
Q ss_pred cccccEEEEEEeCCChhhhhhHHHHHHHHhhhcC---CCCEEEEEeCCCCCccc--------cCHHHHHHHHHcCCeEEE
Q 030504 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE---NIPIVLCGNKVDVKNRQ--------VKAKQVTFHRKKNLQYYE 151 (176)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~liv~nK~Dl~~~~--------~~~~~~~~~~~~~~~~~~ 151 (176)
..+.|++++|+++.+ .+- .-...++.+.+.+. -.+++++.|+.|..... .......+.+.++-.++.
T Consensus 81 ~~g~~~illVi~~~~-~t~-~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~ 158 (196)
T cd01852 81 APGPHAFLLVVPLGR-FTE-EEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA 158 (196)
T ss_pred CCCCEEEEEEEECCC-cCH-HHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence 457899999999886 221 11223333333322 36888999999965432 123344566666666655
Q ss_pred ec-----cCCCCChHHHHHHHHHHHhcC
Q 030504 152 IS-----AKSNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 152 ~S-----~~~~~~v~~~~~~l~~~i~~~ 174 (176)
.+ +..+.+++++++.+.+.+.++
T Consensus 159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~~ 186 (196)
T cd01852 159 FNNKAKGEEQEQQVKELLAKVESMVKEN 186 (196)
T ss_pred EeCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence 55 445778999999998888763
No 250
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=8.3e-17 Score=118.12 Aligned_cols=154 Identities=16% Similarity=0.178 Sum_probs=111.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecC---cEEEEEEEeCCCccccccccccccccccE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC---GKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
++.=|+++|+...|||||+..+...+.... ..-|+|....-+.+.. ....+.+.|||||+.|..+...-..-+|.
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~--EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDI 81 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAG--EAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDI 81 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccc--cCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccE
Confidence 344588999999999999998766554322 2335666666555543 33578899999999999999998899999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHH--------cCCeEEEeccCCCCCh
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK--------KNLQYYEISAKSNYNF 160 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~--------~~~~~~~~S~~~~~~v 160 (176)
+|+|+++++.-.-+..+. +..... .+.|+++.+||.|..+.+......++... ....++++||++|+|+
T Consensus 82 aILVVa~dDGv~pQTiEA-I~hak~--a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi 158 (509)
T COG0532 82 AILVVAADDGVMPQTIEA-INHAKA--AGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGI 158 (509)
T ss_pred EEEEEEccCCcchhHHHH-HHHHHH--CCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCH
Confidence 999999998754444332 122222 39999999999999865544333332221 1257999999999999
Q ss_pred HHHHHHHHHH
Q 030504 161 EKPFLYLARK 170 (176)
Q Consensus 161 ~~~~~~l~~~ 170 (176)
++++..++..
T Consensus 159 ~eLL~~ill~ 168 (509)
T COG0532 159 DELLELILLL 168 (509)
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 251
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.73 E-value=2e-16 Score=112.45 Aligned_cols=158 Identities=18% Similarity=0.262 Sum_probs=98.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCC------CccccceeEEEeEEEEE---------------ecC-cEEEEEEEeCCCc-
Q 030504 16 LVIVGDGGTGKTTFVKRHLTGEFE------KKYEPTIGVEVHPLDFF---------------TNC-GKIRFYCWDTAGQ- 72 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~~~~~------~~~~~~~~~~~~~~~~~---------------~~~-~~~~~~~~D~~g~- 72 (176)
|+++|.++||||||++++...... ....|+.|......... .++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999998876542 23345555444321100 112 3468999999997
Q ss_pred ---ccccccccc---ccccccEEEEEEeCCC---------------hh-hhhhH----HHH-------------------
Q 030504 73 ---EKFGGLRDG---YYIHGQCAIIMFDVTA---------------RL-TYKNV----PTW------------------- 107 (176)
Q Consensus 73 ---~~~~~~~~~---~~~~~~~~i~v~d~~~---------------~~-s~~~~----~~~------------------- 107 (176)
+.+..+... .++++|++++|+|+.. |. .++.+ ..|
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333333333 4889999999999973 10 11111 111
Q ss_pred -----------HH----------HHh-h----------------------hcCCCCEEEEEeCCCCCccccCHHHHHHHH
Q 030504 108 -----------HR----------DLC-R----------------------VCENIPIVLCGNKVDVKNRQVKAKQVTFHR 143 (176)
Q Consensus 108 -----------~~----------~~~-~----------------------~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~ 143 (176)
+. .+. + ....+|+++++||.|+.......+ .+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~~~--~l~~ 238 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENNIS--KLRL 238 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHHHH--HHHh
Confidence 00 000 0 012469999999999753322111 1212
Q ss_pred H-cCCeEEEeccCCCCChHHHHH-HHHHHHhcCC
Q 030504 144 K-KNLQYYEISAKSNYNFEKPFL-YLARKLAGST 175 (176)
Q Consensus 144 ~-~~~~~~~~S~~~~~~v~~~~~-~l~~~i~~~~ 175 (176)
. ....++.+||+.+.+++++.+ .+++.+.+.+
T Consensus 239 ~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~ 272 (318)
T cd01899 239 KYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDS 272 (318)
T ss_pred hCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCC
Confidence 2 346799999999999999998 6988886654
No 252
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.73 E-value=5.6e-17 Score=122.41 Aligned_cols=120 Identities=18% Similarity=0.167 Sum_probs=85.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhc-CCCCC-------------------ccccceeEEEeEEEEEecCcEEEEEEEeCC
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLT-GEFEK-------------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTA 70 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~-~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 70 (176)
....+|+|+|++++|||||+++++. +.... ......|++.......++...+.+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 3567999999999999999999753 21110 011123455555556667778899999999
Q ss_pred CccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc
Q 030504 71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133 (176)
Q Consensus 71 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~ 133 (176)
|+..+.......+..+|++++|+|+++... .....++..... .+.|+++++||+|+....
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~--~~~PiivviNKiD~~~~~ 148 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL--RDTPIFTFMNKLDRDIRD 148 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh--cCCCEEEEEECccccCCC
Confidence 998887766667889999999999987521 122333333333 378999999999987543
No 253
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.73 E-value=2.6e-16 Score=113.87 Aligned_cols=159 Identities=16% Similarity=0.188 Sum_probs=122.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc--CCCCC-----------ccccceeEEEeEEEE----Ee-cCcEEEEEEEeCCCcc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT--GEFEK-----------KYEPTIGVEVHPLDF----FT-NCGKIRFYCWDTAGQE 73 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~--~~~~~-----------~~~~~~~~~~~~~~~----~~-~~~~~~~~~~D~~g~~ 73 (176)
...|..|+-+-..|||||..|++. |.... ......|+|.....+ .. ++..+.+.++|||||-
T Consensus 8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV 87 (603)
T COG0481 8 NIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 87 (603)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc
Confidence 455788999999999999999874 21110 111123444333322 22 4478999999999999
Q ss_pred ccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCC---eEE
Q 030504 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYY 150 (176)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~ 150 (176)
.|.-.....+..|.++++|+|++.+-.-+.+...+..+.. +.-++.|+||.||+...+..-..+...-.|+ ..+
T Consensus 88 DFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~---~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~dav 164 (603)
T COG0481 88 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN---NLEIIPVLNKIDLPAADPERVKQEIEDIIGIDASDAV 164 (603)
T ss_pred ceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc---CcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcchhe
Confidence 9988888888999999999999998877888777766655 8889999999999987776666666666665 478
Q ss_pred EeccCCCCChHHHHHHHHHHHhc
Q 030504 151 EISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 151 ~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
.+||++|.|++++++.+++++.-
T Consensus 165 ~~SAKtG~gI~~iLe~Iv~~iP~ 187 (603)
T COG0481 165 LVSAKTGIGIEDVLEAIVEKIPP 187 (603)
T ss_pred eEecccCCCHHHHHHHHHhhCCC
Confidence 99999999999999999998764
No 254
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.73 E-value=9.6e-17 Score=119.04 Aligned_cols=161 Identities=15% Similarity=0.173 Sum_probs=103.1
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCC---CCCcccc----ceeEEEeEE----------EE-EecC------------
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGE---FEKKYEP----TIGVEVHPL----------DF-FTNC------------ 59 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~---~~~~~~~----~~~~~~~~~----------~~-~~~~------------ 59 (176)
..++++|.++|+...|||||+..+..-. +.++... ..|+..... .+ ....
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 3578999999999999999999966321 1111111 112221100 00 0000
Q ss_pred ----cEEEEEEEeCCCccccccccccccccccEEEEEEeCCCh-hhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc
Q 030504 60 ----GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR-LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (176)
Q Consensus 60 ----~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~ 134 (176)
....+.++|+||++.|.......+..+|++++|+|+..+ ...+...++ . +.....-.|+++++||+|+.+...
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl-~-i~~~lgi~~iIVvlNKiDlv~~~~ 188 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHL-A-AVEIMKLKHIIILQNKIDLVKEAQ 188 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHH-H-HHHHcCCCcEEEEEecccccCHHH
Confidence 023688999999998877767777899999999999974 233333332 2 222222346899999999975322
Q ss_pred CH----HHHHHHHH---cCCeEEEeccCCCCChHHHHHHHHHHHh
Q 030504 135 KA----KQVTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 135 ~~----~~~~~~~~---~~~~~~~~S~~~~~~v~~~~~~l~~~i~ 172 (176)
.. +..++... ...+++++||++|+|++++++.|...+.
T Consensus 189 ~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 189 AQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 21 22233222 3578999999999999999999987654
No 255
>PRK12739 elongation factor G; Reviewed
Probab=99.72 E-value=1.4e-16 Score=124.34 Aligned_cols=117 Identities=21% Similarity=0.190 Sum_probs=83.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc--CCCCC--c------------cccceeEEEeEEEEEecCcEEEEEEEeCCCcccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT--GEFEK--K------------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~--~~~~~--~------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 75 (176)
...||+|+|++++|||||+++++. |.... . .....|++.......+...+..+.++||||+..+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f 86 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF 86 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH
Confidence 467899999999999999999864 21100 0 0012345555555555556778999999999887
Q ss_pred ccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc
Q 030504 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (176)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~ 131 (176)
...+...+..+|++++|+|+.+....+.. ..+..+... +.|.++++||.|+.+
T Consensus 87 ~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~~--~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 87 TIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADKY--GVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHHc--CCCEEEEEECCCCCC
Confidence 77788888999999999999876543332 222333333 789999999999874
No 256
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=1.6e-16 Score=113.33 Aligned_cols=154 Identities=21% Similarity=0.264 Sum_probs=107.3
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhc--CCCC---------------------------CccccceeEEEeEEEEEecC
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLT--GEFE---------------------------KKYEPTIGVEVHPLDFFTNC 59 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 59 (176)
..+++++++++|+..+|||||+-+++. |..+ .......|.+.......++.
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 356899999999999999999999764 2111 01112346777777777777
Q ss_pred cEEEEEEEeCCCccccccccccccccccEEEEEEeCCChh---hh--hhHHHHHHHHhhhcCCCCEEEEEeCCCCCc-c-
Q 030504 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TY--KNVPTWHRDLCRVCENIPIVLCGNKVDVKN-R- 132 (176)
Q Consensus 60 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~--~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~-~- 132 (176)
..+.++++|+|||..|-...-..+.++|++|+|+|+++.+ +| .........+.....-..+++++||.|+.+ +
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde 162 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDE 162 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCH
Confidence 8889999999999998888888889999999999999873 21 111122222222223345788889999975 1
Q ss_pred ----ccCHHHHHHHHHcC-----CeEEEeccCCCCChHH
Q 030504 133 ----QVKAKQVTFHRKKN-----LQYYEISAKSNYNFEK 162 (176)
Q Consensus 133 ----~~~~~~~~~~~~~~-----~~~~~~S~~~~~~v~~ 162 (176)
....+...+.+..| ++|+++|+..|+|+.+
T Consensus 163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 12233334444444 5699999999999854
No 257
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.71 E-value=9.2e-17 Score=98.94 Aligned_cols=105 Identities=22% Similarity=0.259 Sum_probs=65.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeE--EEEEecCcEEEEEEEeCCCcccccc---------cccccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHP--LDFFTNCGKIRFYCWDTAGQEKFGG---------LRDGYY 83 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~g~~~~~~---------~~~~~~ 83 (176)
+|+++|.+|+|||||+|++++..... .....+.+... ..+.. ....+.++||||...... .....+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~-~~~~~~~T~~~~~~~~~~--~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAK-VSNIPGTTRDPVYGQFEY--NNKKFILVDTPGINDGESQDNDGKEIRKFLEQI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSE-ESSSTTSSSSEEEEEEEE--TTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhcccccc-ccccccceeeeeeeeeee--ceeeEEEEeCCCCcccchhhHHHHHHHHHHHHH
Confidence 68999999999999999988643211 11112222222 22223 334457999999643211 122234
Q ss_pred ccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeC
Q 030504 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNK 126 (176)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK 126 (176)
..+|++++|+|.+++.. +.....+..+. .+.|+++|+||
T Consensus 78 ~~~d~ii~vv~~~~~~~-~~~~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 78 SKSDLIIYVVDASNPIT-EDDKNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp CTESEEEEEEETTSHSH-HHHHHHHHHHH---TTSEEEEEEES
T ss_pred HHCCEEEEEEECCCCCC-HHHHHHHHHHh---cCCCEEEEEcC
Confidence 78899999999877321 22333334442 48999999998
No 258
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=1.5e-16 Score=115.40 Aligned_cols=160 Identities=15% Similarity=0.136 Sum_probs=110.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccc-ccc--------ccccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-FGG--------LRDGY 82 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~--------~~~~~ 82 (176)
..++|+|+|.||+|||||+|.+ .........|..|+|++.....++-.++++.+.||+|..+ ... .....
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL-~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNAL-SREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHH-hcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 4589999999999999999984 4555566788899999999999988999999999999655 111 12223
Q ss_pred cccccEEEEEEeCCCh--hhhhhHHHHHHHHhhhc-------CCCCEEEEEeCCCCCcccc--CHHHHHHHHH----cCC
Q 030504 83 YIHGQCAIIMFDVTAR--LTYKNVPTWHRDLCRVC-------ENIPIVLCGNKVDVKNRQV--KAKQVTFHRK----KNL 147 (176)
Q Consensus 83 ~~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~-------~~~p~liv~nK~Dl~~~~~--~~~~~~~~~~----~~~ 147 (176)
+.++|++++|+|+... ++-..+...+......+ ...|++++.||.|+..... ......+... ..-
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~ 425 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFP 425 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCcccc
Confidence 6789999999999443 22222222222222111 2479999999999876522 1111111111 122
Q ss_pred eEEEeccCCCCChHHHHHHHHHHHh
Q 030504 148 QYYEISAKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 148 ~~~~~S~~~~~~v~~~~~~l~~~i~ 172 (176)
...++|+++++|++++...+...+.
T Consensus 426 i~~~vs~~tkeg~~~L~~all~~~~ 450 (531)
T KOG1191|consen 426 IVVEVSCTTKEGCERLSTALLNIVE 450 (531)
T ss_pred eEEEeeechhhhHHHHHHHHHHHHH
Confidence 3566999999999999888877653
No 259
>COG2262 HflX GTPases [General function prediction only]
Probab=99.71 E-value=6.3e-16 Score=110.35 Aligned_cols=159 Identities=15% Similarity=0.112 Sum_probs=104.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccc--ccccccc------
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF--GGLRDGY------ 82 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--~~~~~~~------ 82 (176)
.....|.++|-.++|||||.|++.+-.......-....+-........+ +..+.+-||.|.-+. ..+..++
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE 268 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEE 268 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHH
Confidence 3456799999999999999999664332211111111222233333432 456778899994321 1122221
Q ss_pred cccccEEEEEEeCCChhhhhhHHHHHHHHhhh-cCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChH
Q 030504 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (176)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~ 161 (176)
...+|+++.|+|++++...+.+......+.+. ....|+++|.||.|+..... .........-..+.+||++|.|++
T Consensus 269 ~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~---~~~~~~~~~~~~v~iSA~~~~gl~ 345 (411)
T COG2262 269 VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE---ILAELERGSPNPVFISAKTGEGLD 345 (411)
T ss_pred hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh---hhhhhhhcCCCeEEEEeccCcCHH
Confidence 35789999999999997666666665555554 25799999999999765443 112222222258999999999999
Q ss_pred HHHHHHHHHHhc
Q 030504 162 KPFLYLARKLAG 173 (176)
Q Consensus 162 ~~~~~l~~~i~~ 173 (176)
.+.+.|...+..
T Consensus 346 ~L~~~i~~~l~~ 357 (411)
T COG2262 346 LLRERIIELLSG 357 (411)
T ss_pred HHHHHHHHHhhh
Confidence 999999887763
No 260
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.71 E-value=2.1e-16 Score=123.44 Aligned_cols=119 Identities=20% Similarity=0.168 Sum_probs=86.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc--CCCCC--cc------------ccceeEEEeEEEEEecCcEEEEEEEeCCCcccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT--GEFEK--KY------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~--~~~~~--~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 75 (176)
...||+|+|++++|||||+++++. +.... .. ....|++.......+...+..+.+|||||+..+
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~ 88 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF 88 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence 456999999999999999999863 21100 00 012355555555555556788999999999988
Q ss_pred ccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc
Q 030504 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133 (176)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~ 133 (176)
...+...++.+|++++|+|+.+....+... .+..+... +.|+++++||+|+....
T Consensus 89 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~~--~~p~ivviNK~D~~~~~ 143 (689)
T TIGR00484 89 TVEVERSLRVLDGAVAVLDAVGGVQPQSET-VWRQANRY--EVPRIAFVNKMDKTGAN 143 (689)
T ss_pred hHHHHHHHHHhCEEEEEEeCCCCCChhHHH-HHHHHHHc--CCCEEEEEECCCCCCCC
Confidence 777888889999999999999865544333 22333333 78999999999998644
No 261
>PRK00007 elongation factor G; Reviewed
Probab=99.69 E-value=8.1e-16 Score=120.15 Aligned_cols=117 Identities=21% Similarity=0.206 Sum_probs=83.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc--CCCCCc--c------------ccceeEEEeEEEEEecCcEEEEEEEeCCCcccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK--Y------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~--~~~~~~--~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 75 (176)
...||+|+|++++|||||+++++. |..... . ....|++..............+.++||||+..+
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f 88 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF 88 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH
Confidence 456999999999999999999873 321100 0 013355555555555556778999999999877
Q ss_pred ccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc
Q 030504 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (176)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~ 131 (176)
.......+..+|++++|+|+......+....| ..+... +.|.++++||.|+.+
T Consensus 89 ~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~-~~~~~~--~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 89 TIEVERSLRVLDGAVAVFDAVGGVEPQSETVW-RQADKY--KVPRIAFVNKMDRTG 141 (693)
T ss_pred HHHHHHHHHHcCEEEEEEECCCCcchhhHHHH-HHHHHc--CCCEEEEEECCCCCC
Confidence 66666677889999999999876544443332 333333 789999999999864
No 262
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=1.7e-15 Score=111.32 Aligned_cols=154 Identities=17% Similarity=0.140 Sum_probs=110.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEE--EecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDF--FTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
+++--|.|+|+...|||||+..|.+...- ....-|++....-+ +.+ ++-.+++.|||||..|.+++..-..-+|+
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VA--A~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDI 227 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVA--AGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDI 227 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCcee--hhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccE
Confidence 45556899999999999999986654331 12223445444433 334 45678999999999999999998899999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHH------HcC--CeEEEeccCCCCCh
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR------KKN--LQYYEISAKSNYNF 160 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~------~~~--~~~~~~S~~~~~~v 160 (176)
+++|+.+.|.-.-+.... +..... .+.|+++.+||+|.+...+..-..++.. ..| .+++++||++|+|+
T Consensus 228 vVLVVAadDGVmpQT~Ea-IkhAk~--A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl 304 (683)
T KOG1145|consen 228 VVLVVAADDGVMPQTLEA-IKHAKS--ANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENL 304 (683)
T ss_pred EEEEEEccCCccHhHHHH-HHHHHh--cCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeecccCCCh
Confidence 999999998754444321 122222 3999999999999887665444444332 222 67999999999999
Q ss_pred HHHHHHHHHH
Q 030504 161 EKPFLYLARK 170 (176)
Q Consensus 161 ~~~~~~l~~~ 170 (176)
+.+.+.+.-.
T Consensus 305 ~~L~eaill~ 314 (683)
T KOG1145|consen 305 DLLEEAILLL 314 (683)
T ss_pred HHHHHHHHHH
Confidence 9998887654
No 263
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.68 E-value=3.6e-15 Score=103.41 Aligned_cols=154 Identities=16% Similarity=0.079 Sum_probs=103.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccc-------ccccccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-------GLRDGYY 83 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~ 83 (176)
.-...++++|.|++|||||++++. +...+. ....-+|........+.++..+++.|+||.-... ....+..
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LT-nt~sev-a~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~ 138 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLT-NTKSEV-ADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVA 138 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHh-CCCccc-cccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeee
Confidence 345689999999999999999955 433322 2222235555555667788899999999853221 3355678
Q ss_pred ccccEEEEEEeCCChhh-hhhHHHHHHHHhhh----cC------------------------------------------
Q 030504 84 IHGQCAIIMFDVTARLT-YKNVPTWHRDLCRV----CE------------------------------------------ 116 (176)
Q Consensus 84 ~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~----~~------------------------------------------ 116 (176)
++||++++|+|+....+ .+.+...++...=. .+
T Consensus 139 R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V 218 (365)
T COG1163 139 RNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADV 218 (365)
T ss_pred ccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceE
Confidence 99999999999996553 43443333322100 00
Q ss_pred --------------------CCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHHH
Q 030504 117 --------------------NIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (176)
Q Consensus 117 --------------------~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~i 171 (176)
-+|.+.|.||.|+.... +...+.+.. ..+.+||..+.|++++.+.|-+.+
T Consensus 219 ~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e---~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 219 LIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLE---ELERLARKP--NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred EEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHH---HHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhh
Confidence 12889999999997732 222222222 789999999999999999887764
No 264
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.68 E-value=1.9e-16 Score=94.79 Aligned_cols=137 Identities=20% Similarity=0.162 Sum_probs=91.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcc----ccccccccccccccEEE
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE----KFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----~~~~~~~~~~~~~~~~i 90 (176)
||+++|..|+|||||.+.+ .|+.. -+..|..+++.. + -..||||.- ++.+-.......+|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L-~G~~~-lykKTQAve~~d-------~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSL-YGNDT-LYKKTQAVEFND-------K----GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHh-hcchh-hhcccceeeccC-------c----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 7999999999999999994 44432 123333322211 1 146999832 22222233356789999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcC-CeEEEeccCCCCChHHHHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
+|-.++++++.-.. .+... -.+|+|-|++|.|+...........+..+-| -++|++|+.++.|+++++..|..
T Consensus 70 ~v~~and~~s~f~p-----~f~~~-~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 70 YVHAANDPESRFPP-----GFLDI-GVKKVIGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred eeecccCccccCCc-----ccccc-cccceEEEEecccccchHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHHHHh
Confidence 99999988642211 11111 2567999999999996554455555555655 47999999999999999999875
Q ss_pred H
Q 030504 170 K 170 (176)
Q Consensus 170 ~ 170 (176)
.
T Consensus 144 ~ 144 (148)
T COG4917 144 L 144 (148)
T ss_pred h
Confidence 4
No 265
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.67 E-value=7e-16 Score=104.81 Aligned_cols=161 Identities=14% Similarity=0.220 Sum_probs=106.6
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEE-EEecCcEEEEEEEeCCCccc-------cccccc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLD-FFTNCGKIRFYCWDTAGQEK-------FGGLRD 80 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~g~~~-------~~~~~~ 80 (176)
...++++|+++|..|+|||||+|+++.|...+...-..+.+..... ..++. -.+.+||+||.+. ++....
T Consensus 35 ~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~ 112 (296)
T COG3596 35 TEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYR 112 (296)
T ss_pred cccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHH
Confidence 3568899999999999999999999977665432222222222221 12222 4688999999765 455677
Q ss_pred cccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcc---------ccCHHHHHHHHH-------
Q 030504 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR---------QVKAKQVTFHRK------- 144 (176)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~---------~~~~~~~~~~~~------- 144 (176)
.++...|.++++.+..++.---. .+++..+....-..+++++.|.+|.... ........+..+
T Consensus 113 d~l~~~DLvL~l~~~~draL~~d-~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~ 191 (296)
T COG3596 113 DYLPKLDLVLWLIKADDRALGTD-EDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR 191 (296)
T ss_pred HHhhhccEEEEeccCCCccccCC-HHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence 77888999999999988752222 2344444444345899999999996542 111111111111
Q ss_pred -c--CCeEEEeccCCCCChHHHHHHHHHHHh
Q 030504 145 -K--NLQYYEISAKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 145 -~--~~~~~~~S~~~~~~v~~~~~~l~~~i~ 172 (176)
. --+++..|...+.|++++...++..+.
T Consensus 192 ~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 192 LFQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred HHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 1 246788888999999999999988764
No 266
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.67 E-value=2.4e-15 Score=104.99 Aligned_cols=157 Identities=15% Similarity=0.092 Sum_probs=100.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCC-ccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc-------cccccccccc
Q 030504 16 LVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-------LRDGYYIHGQ 87 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~~~~~~ 87 (176)
|.++|.|++|||||++.+..-+..- .|..|. ..-....+.. ...-.|.+=|.||.-+..+ .....+.++.
T Consensus 162 VGLVG~PNaGKSTlls~vS~AkPKIadYpFTT-L~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTT-LVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcCCcccCCcccc-ccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 7899999999999999977544321 121111 1111112222 2333578889999543222 2233466889
Q ss_pred EEEEEEeCCChh------hhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc--CHHHHHHHHHcCCeEEE-eccCCCC
Q 030504 88 CAIIMFDVTARL------TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYE-ISAKSNY 158 (176)
Q Consensus 88 ~~i~v~d~~~~~------s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~-~S~~~~~ 158 (176)
+.+.|+|++..+ .++.+...+........++|.++|+||+|+..... ......+.+..++..+. +|+.+++
T Consensus 240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~ 319 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTRE 319 (369)
T ss_pred eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhccc
Confidence 999999998432 44444455555555557999999999999554322 22233444455654333 9999999
Q ss_pred ChHHHHHHHHHHHhcC
Q 030504 159 NFEKPFLYLARKLAGS 174 (176)
Q Consensus 159 ~v~~~~~~l~~~i~~~ 174 (176)
|++++...+.+.+.+.
T Consensus 320 g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 320 GLDELLRALAELLEET 335 (369)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999988877654
No 267
>PRK12740 elongation factor G; Reviewed
Probab=99.66 E-value=1.3e-15 Score=119.06 Aligned_cols=110 Identities=20% Similarity=0.263 Sum_probs=76.1
Q ss_pred EcCCCCcHHHHHHHHhcC--CCC------Cc--------cccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccc
Q 030504 19 VGDGGTGKTTFVKRHLTG--EFE------KK--------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGY 82 (176)
Q Consensus 19 ~G~~~~GKttl~~~~~~~--~~~------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~ 82 (176)
+|++++|||||+++++.. ... .. .....|++............+.+.+|||||+..+...+...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 599999999999998532 110 00 00012334444444444567889999999998877777788
Q ss_pred cccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc
Q 030504 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (176)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~ 131 (176)
+..+|++++|+|++.....+....| ..+... +.|+++|+||+|+..
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~~--~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETVW-RQAEKY--GVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHHH-HHHHHc--CCCEEEEEECCCCCC
Confidence 8999999999999987654443333 333333 789999999999864
No 268
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.9e-15 Score=98.85 Aligned_cols=152 Identities=16% Similarity=0.250 Sum_probs=100.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccc---cccEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI---HGQCAI 90 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~---~~~~~i 90 (176)
-.|+++|+.+||||+|.-++..|.++..+.+ .+-.+........ ...++|.|||.+.+.....++. ++-+++
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtS---iepn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV 113 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTS---IEPNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV 113 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeeee---eccceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence 4699999999999999999998866554332 2233333333322 2789999999988766555555 789999
Q ss_pred EEEeCCC-hhhhhhHHHH-HHHHhhh---cCCCCEEEEEeCCCCCccccCHHHH--------HHH--H------------
Q 030504 91 IMFDVTA-RLTYKNVPTW-HRDLCRV---CENIPIVLCGNKVDVKNRQVKAKQV--------TFH--R------------ 143 (176)
Q Consensus 91 ~v~d~~~-~~s~~~~~~~-~~~~~~~---~~~~p~liv~nK~Dl~~~~~~~~~~--------~~~--~------------ 143 (176)
||+|... .........+ +..+... ...+|++++-||.|+......+..+ ..- +
T Consensus 114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~ 193 (238)
T KOG0090|consen 114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIA 193 (238)
T ss_pred EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence 9999874 2333333333 3333332 2578899999999986533211110 000 0
Q ss_pred ------------------HcCCeEEEeccCCCCChHHHHHHHHHHH
Q 030504 144 ------------------KKNLQYYEISAKSNYNFEKPFLYLARKL 171 (176)
Q Consensus 144 ------------------~~~~~~~~~S~~~~~~v~~~~~~l~~~i 171 (176)
...+.|.++|++++ +++++-+|+.+.+
T Consensus 194 ~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 194 KDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred ccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 01244788999998 9999999998753
No 269
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.65 E-value=4.4e-16 Score=113.29 Aligned_cols=168 Identities=15% Similarity=0.125 Sum_probs=118.7
Q ss_pred CCCCCCCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccc----ccc
Q 030504 3 LPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF----GGL 78 (176)
Q Consensus 3 ~~~~~~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----~~~ 78 (176)
+++.++.+++.-.++++|-|++|||||++.+..+... ..|...++...+....+.+-..+++.||||.-.. +..
T Consensus 158 l~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradve--vqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~ 235 (620)
T KOG1490|consen 158 LSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDE--VQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNI 235 (620)
T ss_pred HhcCCCCCCCcCeEEEecCCCCCcHhhcccccccccc--cCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhH
Confidence 3456778889999999999999999999986655432 2333333444444455667788999999994221 111
Q ss_pred cc-----cccccccEEEEEEeCCC--hhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc-cccCHHHH----HHHHHcC
Q 030504 79 RD-----GYYIHGQCAIIMFDVTA--RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQV----TFHRKKN 146 (176)
Q Consensus 79 ~~-----~~~~~~~~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~-~~~~~~~~----~~~~~~~ 146 (176)
.. +..+--.+++|+.|++. +.+.....+++..+...+.+.|.++|+||+|+-. +...++.. .+....+
T Consensus 236 IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~ 315 (620)
T KOG1490|consen 236 IEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGN 315 (620)
T ss_pred HHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccC
Confidence 11 12223368899999985 4577777788889988889999999999999865 33333332 3333345
Q ss_pred CeEEEeccCCCCChHHHHHHHHHHHh
Q 030504 147 LQYYEISAKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 147 ~~~~~~S~~~~~~v~~~~~~l~~~i~ 172 (176)
++++++|+.+.+||-++-...+.++.
T Consensus 316 v~v~~tS~~~eegVm~Vrt~ACe~LL 341 (620)
T KOG1490|consen 316 VKVVQTSCVQEEGVMDVRTTACEALL 341 (620)
T ss_pred ceEEEecccchhceeeHHHHHHHHHH
Confidence 89999999999999988877777654
No 270
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.63 E-value=3e-15 Score=117.36 Aligned_cols=117 Identities=24% Similarity=0.185 Sum_probs=80.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCC---------------CCCc---cccceeEEEeEEEEEecCcEEEEEEEeCCCcc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGE---------------FEKK---YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~---------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 73 (176)
...||+++|+.++|||||+++++... +.+. ...|............++..+.+.+|||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 45799999999999999999987421 1110 11122222222223356778899999999999
Q ss_pred ccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc
Q 030504 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (176)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~ 131 (176)
.+.......++.+|++++|+|+.+....+....| ..... .+.|.++++||.|...
T Consensus 98 ~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~~--~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 98 DFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQALK--ENVKPVLFINKVDRLI 152 (720)
T ss_pred ccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHHH--cCCCEEEEEEChhccc
Confidence 8887777888999999999999875433332222 22222 3778899999999864
No 271
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.62 E-value=3.5e-14 Score=103.95 Aligned_cols=83 Identities=23% Similarity=0.360 Sum_probs=53.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCC-cc-----ccceeEEEeEEEE---------------Eec-CcEEEEEEEeCCC
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEK-KY-----EPTIGVEVHPLDF---------------FTN-CGKIRFYCWDTAG 71 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~-~~-----~~~~~~~~~~~~~---------------~~~-~~~~~~~~~D~~g 71 (176)
++|+++|.|+||||||+|++....... ++ .|+.|........ ..+ .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 689999999999999999988765532 22 2333332211000 011 1236789999999
Q ss_pred ccc----cccccccc---cccccEEEEEEeCC
Q 030504 72 QEK----FGGLRDGY---YIHGQCAIIMFDVT 96 (176)
Q Consensus 72 ~~~----~~~~~~~~---~~~~~~~i~v~d~~ 96 (176)
... ...+-..+ ++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 532 22233333 78999999999996
No 272
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.62 E-value=8.9e-15 Score=104.60 Aligned_cols=115 Identities=17% Similarity=0.163 Sum_probs=82.1
Q ss_pred cEEEEEEEeCCCccccccccccccccccEEEEEEeCCCh----------hhhhhHHHHHHHHhhh--cCCCCEEEEEeCC
Q 030504 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR----------LTYKNVPTWHRDLCRV--CENIPIVLCGNKV 127 (176)
Q Consensus 60 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~--~~~~p~liv~nK~ 127 (176)
..+.+.+||++|+...+..|..++.+++++++|+|+++- ..+......+..+... +.+.|+++++||.
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~ 238 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK 238 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence 457799999999999999999999999999999999974 2333443444444332 3689999999999
Q ss_pred CCCccc------------------cCHHHHHHHHH----------cCCeEEEeccCCCCChHHHHHHHHHHHhcC
Q 030504 128 DVKNRQ------------------VKAKQVTFHRK----------KNLQYYEISAKSNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 128 Dl~~~~------------------~~~~~~~~~~~----------~~~~~~~~S~~~~~~v~~~~~~l~~~i~~~ 174 (176)
|+..+. ....+..+... ..+..+.++|.+..+++.+|+.+...|.+.
T Consensus 239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~ 313 (317)
T cd00066 239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN 313 (317)
T ss_pred HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence 954311 11122222211 235567899999999999999988877653
No 273
>PRK13768 GTPase; Provisional
Probab=99.60 E-value=1e-14 Score=101.18 Aligned_cols=111 Identities=14% Similarity=0.159 Sum_probs=72.0
Q ss_pred EEEEEeCCCcccc---cccccccccc-----ccEEEEEEeCCChhhhhhHH--HHHHHHhhhcCCCCEEEEEeCCCCCcc
Q 030504 63 RFYCWDTAGQEKF---GGLRDGYYIH-----GQCAIIMFDVTARLTYKNVP--TWHRDLCRVCENIPIVLCGNKVDVKNR 132 (176)
Q Consensus 63 ~~~~~D~~g~~~~---~~~~~~~~~~-----~~~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~p~liv~nK~Dl~~~ 132 (176)
.+.+||+||+.+. +..+..+.+. .+++++|+|+.......... .|+........+.|+++|+||+|+.+.
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 5889999997653 2333333222 79999999997644332222 222222222248999999999998764
Q ss_pred ccCHHHHH----------------------------HHHHcC--CeEEEeccCCCCChHHHHHHHHHHHhc
Q 030504 133 QVKAKQVT----------------------------FHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 133 ~~~~~~~~----------------------------~~~~~~--~~~~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
....+... ..+..+ .+++++|++++.|++++++++.+.+.-
T Consensus 178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~ 248 (253)
T PRK13768 178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCG 248 (253)
T ss_pred hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCC
Confidence 33222111 122334 578999999999999999999887753
No 274
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.60 E-value=3.9e-14 Score=98.48 Aligned_cols=160 Identities=18% Similarity=0.265 Sum_probs=111.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEe--cCcEEEEEEEeCCCccccccccccccccc--
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--NCGKIRFYCWDTAGQEKFGGLRDGYYIHG-- 86 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~-- 86 (176)
+..-+|+++|..++|||||+.++.+.. .+.+..|..+....+.- .+....+.+|-..|.--+..+....+...
T Consensus 50 psgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ 126 (473)
T KOG3905|consen 50 PSGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSL 126 (473)
T ss_pred CCCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCc
Confidence 345689999999999999999955444 23444555555554433 33456788898888665555444433322
Q ss_pred --cEEEEEEeCCChhhh-hhHHHHHHHHhhhc------------------------------------------------
Q 030504 87 --QCAIIMFDVTARLTY-KNVPTWHRDLCRVC------------------------------------------------ 115 (176)
Q Consensus 87 --~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~------------------------------------------------ 115 (176)
-.+|++.|.+++... +.+.+|...+.+..
T Consensus 127 aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de 206 (473)
T KOG3905|consen 127 AETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADE 206 (473)
T ss_pred cceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccc
Confidence 478889999999543 45555654332210
Q ss_pred --------------CCCCEEEEEeCCCC----Ccc---------ccCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 116 --------------ENIPIVLCGNKVDV----KNR---------QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 116 --------------~~~p~liv~nK~Dl----~~~---------~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
-++|+++|.||||. +.+ ......+++|.++|..++.+|++...|++-+.++|+
T Consensus 207 ~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYiv 286 (473)
T KOG3905|consen 207 HVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIV 286 (473)
T ss_pred ccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHH
Confidence 02489999999997 221 123456799999999999999999999999999999
Q ss_pred HHHhc
Q 030504 169 RKLAG 173 (176)
Q Consensus 169 ~~i~~ 173 (176)
++++.
T Consensus 287 hr~yG 291 (473)
T KOG3905|consen 287 HRSYG 291 (473)
T ss_pred HHhcC
Confidence 98764
No 275
>PRK09866 hypothetical protein; Provisional
Probab=99.60 E-value=7.5e-14 Score=105.52 Aligned_cols=107 Identities=16% Similarity=0.195 Sum_probs=70.0
Q ss_pred EEEEEeCCCcccc-----ccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc--C
Q 030504 63 RFYCWDTAGQEKF-----GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--K 135 (176)
Q Consensus 63 ~~~~~D~~g~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~--~ 135 (176)
.+.+.||||.... .......+..+|++++|+|.....+.... .....+.....+.|+++|+||+|+.++.. .
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-eIlk~Lkk~~K~~PVILVVNKIDl~dreeddk 309 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-EVREAILAVGQSVPLYVLVNKFDQQDRNSDDA 309 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-HHHHHHHhcCCCCCEEEEEEcccCCCcccchH
Confidence 5778999997542 11233468899999999999875332221 22333333322369999999999864332 2
Q ss_pred HHHHHHHH----HcC---CeEEEeccCCCCChHHHHHHHHHH
Q 030504 136 AKQVTFHR----KKN---LQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 136 ~~~~~~~~----~~~---~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
....++.. ... ..+|++||++|.|++++++.+.+.
T Consensus 310 E~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 310 DQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 22333322 222 369999999999999999998773
No 276
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.60 E-value=1.2e-14 Score=100.42 Aligned_cols=95 Identities=15% Similarity=0.108 Sum_probs=78.8
Q ss_pred cccccccccccccccEEEEEEeCCChh-hhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccC-HHHHHHHHHcCCeEE
Q 030504 73 EKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNLQYY 150 (176)
Q Consensus 73 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~ 150 (176)
+++..+.+.++.++|++++|+|+.++. +++.+..|+..+.. .+.|+++|+||+||...... .+..+.+...+++++
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~--~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~ 101 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA--QNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVL 101 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEE
Confidence 678888899999999999999999887 88999999876654 48999999999999653322 233455556889999
Q ss_pred EeccCCCCChHHHHHHHHH
Q 030504 151 EISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 151 ~~S~~~~~~v~~~~~~l~~ 169 (176)
++||++|.|++++|+.+.+
T Consensus 102 ~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 102 MTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEecCCchhHHHHHhhhcC
Confidence 9999999999999998764
No 277
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.59 E-value=7e-15 Score=99.89 Aligned_cols=112 Identities=15% Similarity=0.196 Sum_probs=67.9
Q ss_pred EEEEEEeCCCc-ccccccccccc-----c--cccEEEEEEeCCChhhhhhH-HHHHHHHhhh-cCCCCEEEEEeCCCCCc
Q 030504 62 IRFYCWDTAGQ-EKFGGLRDGYY-----I--HGQCAIIMFDVTARLTYKNV-PTWHRDLCRV-CENIPIVLCGNKVDVKN 131 (176)
Q Consensus 62 ~~~~~~D~~g~-~~~~~~~~~~~-----~--~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~-~~~~p~liv~nK~Dl~~ 131 (176)
+.+.++||||| |.|.+.....+ . ..-+++||+|.....+-... ..++..+.-. ....|++++.||+|+.+
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d 195 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSD 195 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccccc
Confidence 56889999997 44544433332 1 23577778886643322111 1222221111 14899999999999987
Q ss_pred cccCHHHH-------HHHH---------------------HcCCeEEEeccCCCCChHHHHHHHHHHHhc
Q 030504 132 RQVKAKQV-------TFHR---------------------KKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 132 ~~~~~~~~-------~~~~---------------------~~~~~~~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
.....+.+ +... ..++..+.+|+.+|.|++++|..+-+.+.+
T Consensus 196 ~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 196 SEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDE 265 (366)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHH
Confidence 54322211 0000 124668999999999999999988776543
No 278
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.59 E-value=1.6e-14 Score=104.03 Aligned_cols=114 Identities=16% Similarity=0.154 Sum_probs=81.4
Q ss_pred cEEEEEEEeCCCccccccccccccccccEEEEEEeCCCh----------hhhhhHHHHHHHHhhh--cCCCCEEEEEeCC
Q 030504 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR----------LTYKNVPTWHRDLCRV--CENIPIVLCGNKV 127 (176)
Q Consensus 60 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~--~~~~p~liv~nK~ 127 (176)
....+.+||++|+...+..|..++.+++++++|+|+++- ..+......+..+... ..+.|+++++||.
T Consensus 182 ~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~ 261 (342)
T smart00275 182 KKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKI 261 (342)
T ss_pred CCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecH
Confidence 446789999999999999999999999999999999963 2344444444444432 3689999999999
Q ss_pred CCCccc-----------------cCHHHHHHHHH-----------cCCeEEEeccCCCCChHHHHHHHHHHHhc
Q 030504 128 DVKNRQ-----------------VKAKQVTFHRK-----------KNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 128 Dl~~~~-----------------~~~~~~~~~~~-----------~~~~~~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
|+..+. .......+.+. ..+..+.++|.+-.++..+|+.+...|.+
T Consensus 262 D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~ 335 (342)
T smart00275 262 DLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQ 335 (342)
T ss_pred HhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHH
Confidence 965311 11122222111 22556778899999999999988777654
No 279
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.58 E-value=9.2e-14 Score=103.19 Aligned_cols=165 Identities=21% Similarity=0.274 Sum_probs=114.7
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEec--CcEEEEEEEeCCCcccccccccccccc
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN--CGKIRFYCWDTAGQEKFGGLRDGYYIH 85 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~ 85 (176)
+..+..-.|+|+|..++|||||+.+|.. .. .+.++.|.+|....+.-+ +....+.+|-..|...+..+....+..
T Consensus 20 ~~~~~~k~vlvlG~~~~GKttli~~L~~-~e--~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~ 96 (472)
T PF05783_consen 20 TKLPSEKSVLVLGDKGSGKTTLIARLQG-IE--DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTP 96 (472)
T ss_pred ccCCCCceEEEEeCCCCchHHHHHHhhc-cC--CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCc
Confidence 3445678999999999999999999654 32 344566666666655432 234578999998866666665554442
Q ss_pred ----ccEEEEEEeCCChhhh-hhHHHHHHHHhhh-------------------------------c--------------
Q 030504 86 ----GQCAIIMFDVTARLTY-KNVPTWHRDLCRV-------------------------------C-------------- 115 (176)
Q Consensus 86 ----~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~-------------------------------~-------------- 115 (176)
--.+++|.|.+.|..+ +.+.+|+..+.+. .
T Consensus 97 ~~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~ 176 (472)
T PF05783_consen 97 ENLPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSS 176 (472)
T ss_pred ccccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccc
Confidence 3588999999998644 3343433322110 0
Q ss_pred ------------------CCCCEEEEEeCCCCC----ccc---------cCHHHHHHHHHcCCeEEEeccCCCCChHHHH
Q 030504 116 ------------------ENIPIVLCGNKVDVK----NRQ---------VKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 116 ------------------~~~p~liv~nK~Dl~----~~~---------~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~ 164 (176)
-++|++||.+|+|.- .+. +.+-.+.+|..+|+.+|.||++...+++.++
T Consensus 177 ~~~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~ 256 (472)
T PF05783_consen 177 SDDESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLY 256 (472)
T ss_pred cccccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHH
Confidence 025999999999953 211 1223568889999999999999999999999
Q ss_pred HHHHHHHhcCC
Q 030504 165 LYLARKLAGST 175 (176)
Q Consensus 165 ~~l~~~i~~~~ 175 (176)
.+|.+.++..+
T Consensus 257 ~yi~h~l~~~~ 267 (472)
T PF05783_consen 257 KYILHRLYGFP 267 (472)
T ss_pred HHHHHHhccCC
Confidence 99999887654
No 280
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.57 E-value=1.5e-13 Score=99.60 Aligned_cols=159 Identities=17% Similarity=0.231 Sum_probs=117.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc--CCCCCc------------cccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK------------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG 77 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 77 (176)
+-.||+|+-+...|||||+.+++. |.|... .....|++.-.+...+.++++.+.+.|||||..|.-
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 456899999999999999999885 333221 122346677777666777889999999999999998
Q ss_pred ccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc---CHHHHHHHHH-------cCC
Q 030504 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQVTFHRK-------KNL 147 (176)
Q Consensus 78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~---~~~~~~~~~~-------~~~ 147 (176)
.....+.-.|++++++|+.+...-+.-......+.. +.+-++|.||.|.++... ..+...++.. +.+
T Consensus 84 EVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~---gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdF 160 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALAL---GLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDF 160 (603)
T ss_pred hhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHc---CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCC
Confidence 888888999999999999987654443333233322 777888899999987554 3344444433 457
Q ss_pred eEEEeccCCCC----------ChHHHHHHHHHHHhc
Q 030504 148 QYYEISAKSNY----------NFEKPFLYLARKLAG 173 (176)
Q Consensus 148 ~~~~~S~~~~~----------~v~~~~~~l~~~i~~ 173 (176)
+++..|++.|. ++.-+|+.|++.+..
T Consensus 161 PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~ 196 (603)
T COG1217 161 PIVYASARNGTASLDPEDEADDMAPLFETILDHVPA 196 (603)
T ss_pred cEEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence 89999988775 577889998887654
No 281
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.56 E-value=1.1e-13 Score=97.06 Aligned_cols=149 Identities=20% Similarity=0.235 Sum_probs=106.5
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCC-------------CC------------------ccccceeEEEeEEEEEec
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEF-------------EK------------------KYEPTIGVEVHPLDFFTN 58 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~-------------~~------------------~~~~~~~~~~~~~~~~~~ 58 (176)
....+|++.+|+..=|||||+-|++...- .. ......|++.+....++.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 34679999999999999999999876210 00 001123666666666666
Q ss_pred CcEEEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHH-HHHHHhhhcCCCCEEEEEeCCCCCcc-----
Q 030504 59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNR----- 132 (176)
Q Consensus 59 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~p~liv~nK~Dl~~~----- 132 (176)
..+.+|.+-|||||+.|....---...+|++|+++|+...-.-+.-++ ++..+. .=+.+++..||.||.+-
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLL---GIrhvvvAVNKmDLvdy~e~~F 159 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLL---GIRHVVVAVNKMDLVDYSEEVF 159 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHh---CCcEEEEEEeeecccccCHHHH
Confidence 677889999999999998887777888999999999965433232222 222222 24567888899999872
Q ss_pred -ccCHHHHHHHHHcCC---eEEEeccCCCCChH
Q 030504 133 -QVKAKQVTFHRKKNL---QYYEISAKSNYNFE 161 (176)
Q Consensus 133 -~~~~~~~~~~~~~~~---~~~~~S~~~~~~v~ 161 (176)
....+-..++.+++. .++++||+.|+|+-
T Consensus 160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 234445577888774 69999999999974
No 282
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.56 E-value=7.5e-14 Score=97.93 Aligned_cols=121 Identities=12% Similarity=0.098 Sum_probs=70.4
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccc-------cc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR-------DG 81 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~-------~~ 81 (176)
.+.+.++|+++|.+|+||||++|++++.+... .....+.+...........+..+.++||||........ ..
T Consensus 34 ~~~~~~rIllvGktGVGKSSliNsIlG~~v~~-vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~ 112 (313)
T TIGR00991 34 EDVSSLTILVMGKGGVGKSSTVNSIIGERIAT-VSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKR 112 (313)
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhCCCccc-ccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHH
Confidence 45678999999999999999999988654311 11111111111112222246789999999976532211 11
Q ss_pred cc--ccccEEEEEEeCCChhhhhhHHHHHHHHhhhc---CCCCEEEEEeCCCCC
Q 030504 82 YY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVK 130 (176)
Q Consensus 82 ~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~liv~nK~Dl~ 130 (176)
++ ...|++++|..++.....+.-...++.+...+ --.+.+++.|++|..
T Consensus 113 ~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 113 FLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred HhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 11 25899999976653221111122333333332 135789999999965
No 283
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.56 E-value=5.1e-14 Score=95.45 Aligned_cols=159 Identities=11% Similarity=0.047 Sum_probs=90.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccc-------c----ccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL-------R----DGY 82 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-------~----~~~ 82 (176)
++|+++|..|+||||++|.+++...........+.+..+........+..+.++||||....... . ...
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 58999999999999999998876654332222222323332222334567889999995322111 1 112
Q ss_pred cccccEEEEEEeCCChhhhhhHHHHHHHHhhhcC---CCCEEEEEeCCCCCccccC---------HHHHHHHHHcCCeEE
Q 030504 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE---NIPIVLCGNKVDVKNRQVK---------AKQVTFHRKKNLQYY 150 (176)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~liv~nK~Dl~~~~~~---------~~~~~~~~~~~~~~~ 150 (176)
..+.+++++|+..... +-. -...+..+.+.+. -..++||.|..|....... ....++.+.++-.|+
T Consensus 81 ~~g~ha~llVi~~~r~-t~~-~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~ 158 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGRF-TEE-DREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYH 158 (212)
T ss_dssp TT-ESEEEEEEETTB--SHH-HHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred cCCCeEEEEEEecCcc-hHH-HHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEE
Confidence 4568999999998832 211 1122233333321 2468888888886543321 123456677787888
Q ss_pred EeccC------CCCChHHHHHHHHHHHhcC
Q 030504 151 EISAK------SNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 151 ~~S~~------~~~~v~~~~~~l~~~i~~~ 174 (176)
..+.. ....+.++++.+-+.+.++
T Consensus 159 ~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 159 VFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp ECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 87776 3346788888877766654
No 284
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.56 E-value=1.2e-13 Score=92.52 Aligned_cols=99 Identities=12% Similarity=0.085 Sum_probs=62.6
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCE--EEEEeCCCCCccc--cCHH
Q 030504 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI--VLCGNKVDVKNRQ--VKAK 137 (176)
Q Consensus 62 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~--liv~nK~Dl~~~~--~~~~ 137 (176)
....+.++.|..-....... -++.++.|+|+.+...... .+. ++... ++++||+|+.+.. ....
T Consensus 92 ~D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~--~~~-------~qi~~ad~~~~~k~d~~~~~~~~~~~ 159 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPR--KGG-------PGITRSDLLVINKIDLAPMVGADLGV 159 (199)
T ss_pred CCEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhh--hhH-------hHhhhccEEEEEhhhccccccccHHH
Confidence 34556777773211122111 2578999999987654221 111 13334 8889999998531 1222
Q ss_pred HHHHHHH--cCCeEEEeccCCCCChHHHHHHHHHHHh
Q 030504 138 QVTFHRK--KNLQYYEISAKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 138 ~~~~~~~--~~~~~~~~S~~~~~~v~~~~~~l~~~i~ 172 (176)
..+..+. .+.+++++|+++|+|++++|+|+.+.+.
T Consensus 160 ~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 160 MERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 2333333 4579999999999999999999998764
No 285
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.55 E-value=6.6e-14 Score=112.00 Aligned_cols=104 Identities=18% Similarity=0.267 Sum_probs=71.6
Q ss_pred EEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc-ccc-C------
Q 030504 64 FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQV-K------ 135 (176)
Q Consensus 64 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~-~~~-~------ 135 (176)
+.+|||||++.+..+....+..+|++++|+|+++...-+... .+..+... +.|+++++||+|+.. ... .
T Consensus 528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e-~I~~lk~~--~iPiIVViNKiDL~~~~~~~~~~~~~~ 604 (1049)
T PRK14845 528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIE-AINILRQY--KTPFVVAANKIDLIPGWNISEDEPFLL 604 (1049)
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHH-HHHHHHHc--CCCEEEEEECCCCccccccccchhhhh
Confidence 789999999999887777788899999999998742222211 12222332 789999999999853 110 0
Q ss_pred ------HH-HHHH----------HHH---------------cCCeEEEeccCCCCChHHHHHHHHHH
Q 030504 136 ------AK-QVTF----------HRK---------------KNLQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 136 ------~~-~~~~----------~~~---------------~~~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
+. ..++ ..+ ..++++++||++|+|+++++.++...
T Consensus 605 ~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 605 NFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 00 0000 111 13579999999999999999988643
No 286
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.55 E-value=6.2e-15 Score=91.69 Aligned_cols=113 Identities=24% Similarity=0.268 Sum_probs=80.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccc-cceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYE-PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
+||+++|..|+|||+|+.++..+.+...+. ++.+ +......+.+.++.++.|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 589999999999999999998787765443 3433 223334456788999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~ 161 (176)
++..+..+++.+ |...+.... ...|.++++||.|+..... +..+.+..++++|++++.|+.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~------~~~~~~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQ------VATEEGLEFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCc------CCHHHHHHHHHHhCCCcchhh
Confidence 999999888765 665554433 4678899999999854221 112223356778999999874
No 287
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.55 E-value=1.2e-13 Score=95.30 Aligned_cols=122 Identities=8% Similarity=-0.006 Sum_probs=71.8
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc---c-------
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---L------- 78 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~------- 78 (176)
.....++|+++|.+|+|||||+|++++...... ....+.+...........+..+.++||||...... .
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v-~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~ 105 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAAT-SAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSS 105 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHH
Confidence 445789999999999999999999876543222 11111222222223333456789999999764421 0
Q ss_pred cccccc--cccEEEEEEeCCChhhhhhHHHHHHHHhhhcC---CCCEEEEEeCCCCCc
Q 030504 79 RDGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE---NIPIVLCGNKVDVKN 131 (176)
Q Consensus 79 ~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~liv~nK~Dl~~ 131 (176)
...++. ..+++++|..++....-..-...++.+.+.+. -.++++|.||+|...
T Consensus 106 I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 106 IKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSP 163 (249)
T ss_pred HHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence 111222 56888888766643211111233334433322 257999999999754
No 288
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=4.8e-13 Score=99.19 Aligned_cols=155 Identities=20% Similarity=0.212 Sum_probs=108.7
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhc--------------------CCCC---------CccccceeEEEeEEEEEec
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLT--------------------GEFE---------KKYEPTIGVEVHPLDFFTN 58 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~--------------------~~~~---------~~~~~~~~~~~~~~~~~~~ 58 (176)
..+...++++++|+..+|||||+.+++. |... .......|++-......++
T Consensus 172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe 251 (603)
T KOG0458|consen 172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE 251 (603)
T ss_pred cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe
Confidence 4455789999999999999999999765 1111 1122334677777777777
Q ss_pred CcEEEEEEEeCCCccccccccccccccccEEEEEEeCCChh---hhhh--HHHHHHHHhhhcCCCCEEEEEeCCCCCc-c
Q 030504 59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYKN--VPTWHRDLCRVCENIPIVLCGNKVDVKN-R 132 (176)
Q Consensus 59 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~--~~~~~~~~~~~~~~~p~liv~nK~Dl~~-~ 132 (176)
.....+++.|.|||..|......-..++|++++|+|++... +|+. ....+..+.+...-.-+++++||.|+.+ .
T Consensus 252 s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Ws 331 (603)
T KOG0458|consen 252 SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWS 331 (603)
T ss_pred cCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCcc
Confidence 78889999999999999888888889999999999998642 3321 1122233333333455788899999875 1
Q ss_pred -----ccCHHHHHHH-HHcC-----CeEEEeccCCCCChHH
Q 030504 133 -----QVKAKQVTFH-RKKN-----LQYYEISAKSNYNFEK 162 (176)
Q Consensus 133 -----~~~~~~~~~~-~~~~-----~~~~~~S~~~~~~v~~ 162 (176)
........+. +..| +.|++||..+|+|+-.
T Consensus 332 q~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 332 QDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK 372 (603)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence 2223334555 4444 4799999999999743
No 289
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.51 E-value=6.4e-14 Score=111.55 Aligned_cols=117 Identities=13% Similarity=0.139 Sum_probs=80.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCC--C---------cccc---ceeEEEeEE--EEEe--------------cCc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFE--K---------KYEP---TIGVEVHPL--DFFT--------------NCG 60 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~--~---------~~~~---~~~~~~~~~--~~~~--------------~~~ 60 (176)
....||+|+|+.++|||||+.+++...-. . .+.+ ..|.+.... .... +..
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 35679999999999999999998753210 0 0000 112222211 1111 223
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCC
Q 030504 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~ 130 (176)
.+.+.++|||||..|.......++.+|++|+|+|+..+...+....|. .+... ++|+++++||.|..
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~-~~~~~--~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALGE--RIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHH-HHHHC--CCCEEEEEECCccc
Confidence 677899999999999888888889999999999999876555444443 33333 89999999999987
No 290
>PTZ00416 elongation factor 2; Provisional
Probab=99.50 E-value=1.5e-13 Score=109.23 Aligned_cols=116 Identities=16% Similarity=0.190 Sum_probs=79.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcC--CCCCcc------------ccceeEEEeEE--EEEec--------CcEEEEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTG--EFEKKY------------EPTIGVEVHPL--DFFTN--------CGKIRFYCW 67 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~--~~~~~~------------~~~~~~~~~~~--~~~~~--------~~~~~~~~~ 67 (176)
...||+++|+.++|||||+++++.. ...... ....|++.... ..... .+...+.++
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 4569999999999999999998752 111000 00112222211 11221 235678999
Q ss_pred eCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCC
Q 030504 68 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (176)
Q Consensus 68 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~ 130 (176)
||||+.++.......++.+|++++|+|+.++...+....| ..+... +.|+++++||+|+.
T Consensus 98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~~--~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQE--RIRPVLFINKVDRA 157 (836)
T ss_pred cCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHHc--CCCEEEEEEChhhh
Confidence 9999998877777788999999999999986544443333 344433 78999999999987
No 291
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=1.6e-12 Score=91.25 Aligned_cols=161 Identities=17% Similarity=0.128 Sum_probs=103.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcC----CCCCc-cccceeEEEeEE--EEE------e-cCcEEEEEEEeCCCccccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTG----EFEKK-YEPTIGVEVHPL--DFF------T-NCGKIRFYCWDTAGQEKFG 76 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~----~~~~~-~~~~~~~~~~~~--~~~------~-~~~~~~~~~~D~~g~~~~~ 76 (176)
+..+|+.++|+..+|||||.+++..- -|+.. .+.+.|.+.+.. ... . .+....|.+.|.|||...-
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 35699999999999999999997642 22222 122233333322 111 1 2345788999999998655
Q ss_pred cccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHH-HHHHH-------HH----
Q 030504 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFH-------RK---- 144 (176)
Q Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~-~~~~~-------~~---- 144 (176)
...-....-.|..++|+|+.....-+.++.++ +.+. --...++|+||.|+..++.... ..+.. +.
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLi--ig~~-~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~ 161 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLI--IGEL-LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFD 161 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchhhh--hhhh-hccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcC
Confidence 44445555679999999999877666665432 2222 1345677788888765432221 11111 11
Q ss_pred cCCeEEEeccCCC----CChHHHHHHHHHHHhcC
Q 030504 145 KNLQYYEISAKSN----YNFEKPFLYLARKLAGS 174 (176)
Q Consensus 145 ~~~~~~~~S~~~~----~~v~~~~~~l~~~i~~~ 174 (176)
.+.+++++|++.| +++.|+.+.|-.++.+.
T Consensus 162 g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P 195 (522)
T KOG0461|consen 162 GNSPIVEVSAADGYFKEEMIQELKEALESRIFEP 195 (522)
T ss_pred CCCceeEEecCCCccchhHHHHHHHHHHHhhcCC
Confidence 1378999999999 78888888888887754
No 292
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.49 E-value=2.6e-12 Score=95.43 Aligned_cols=159 Identities=15% Similarity=0.173 Sum_probs=110.9
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEE
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (176)
+.+-+.+.++|+.++|||.+++.|+++.+...+..+....+..-.+...+....+.+-|.+-. ........- ..+|++
T Consensus 422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~ 499 (625)
T KOG1707|consen 422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVA 499 (625)
T ss_pred cceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeE
Confidence 346788999999999999999999987776554444433333333333345445666676644 222221211 678999
Q ss_pred EEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc--cCHHHHHHHHHcCC-eEEEeccCCCCChHHHHHH
Q 030504 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~--~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~~~ 166 (176)
+++||.+++.+|......++.-... ...|+++|++|+|+.... ...+..++++++++ +.+..|++.... .++|..
T Consensus 500 ~~~YDsS~p~sf~~~a~v~~~~~~~-~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~k 577 (625)
T KOG1707|consen 500 CLVYDSSNPRSFEYLAEVYNKYFDL-YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFIK 577 (625)
T ss_pred EEecccCCchHHHHHHHHHHHhhhc-cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHHHH
Confidence 9999999999998887655444333 689999999999997633 33334899999997 467778775333 899999
Q ss_pred HHHHHh
Q 030504 167 LARKLA 172 (176)
Q Consensus 167 l~~~i~ 172 (176)
|+.+.+
T Consensus 578 L~~~A~ 583 (625)
T KOG1707|consen 578 LATMAQ 583 (625)
T ss_pred HHHhhh
Confidence 887654
No 293
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=3.6e-13 Score=96.96 Aligned_cols=133 Identities=18% Similarity=0.169 Sum_probs=97.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc-CCCC-----------C--------ccccceeEEEeEEEEEecCcEEEEEEEeCCC
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT-GEFE-----------K--------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~-~~~~-----------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 71 (176)
+....+|+-+|.+|||||..+++. |... . +.....|++..+....++..+..+.+.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 345689999999999999999763 2110 0 0111236677777777788888899999999
Q ss_pred ccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCC
Q 030504 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL 147 (176)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~ 147 (176)
|+.|.......+..+|.+++|+|+..+-.-+ ..++++.+.-+ +.|++=++||.|...+.+-+-..+..+.+++
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~q-T~KLfeVcrlR--~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i 163 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQ-TLKLFEVCRLR--DIPIFTFINKLDREGRDPLELLDEIEEELGI 163 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccCccHH-HHHHHHHHhhc--CCceEEEeeccccccCChHHHHHHHHHHhCc
Confidence 9999998888899999999999998654322 23444555444 9999999999999887776655555555543
No 294
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.47 E-value=1.5e-12 Score=88.11 Aligned_cols=150 Identities=14% Similarity=0.141 Sum_probs=82.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcC--C-CC---------Ccccc----ceeEE-----EeEEEE-----------Eec
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTG--E-FE---------KKYEP----TIGVE-----VHPLDF-----------FTN 58 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~--~-~~---------~~~~~----~~~~~-----~~~~~~-----------~~~ 58 (176)
.....|.++|..|+|||||+++++.. . .. ..... ..|.. ..+... ...
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~ 99 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLP 99 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhc
Confidence 35678999999999999999997642 1 00 00000 00000 000000 000
Q ss_pred CcEEEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc--CH
Q 030504 59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KA 136 (176)
Q Consensus 59 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~--~~ 136 (176)
.....+.+.++.|.-... ..+....+..+.|+|+.+.... ....... ...|.++++||+|+.+... ..
T Consensus 100 ~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~--~~~~~~~-----~~~a~iiv~NK~Dl~~~~~~~~~ 169 (207)
T TIGR00073 100 LDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDK--PLKYPGM-----FKEADLIVINKADLAEAVGFDVE 169 (207)
T ss_pred cCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccch--hhhhHhH-----HhhCCEEEEEHHHccccchhhHH
Confidence 012345666776621000 1111234555667777654321 1111111 1567899999999975322 22
Q ss_pred HHHHHHHHcC--CeEEEeccCCCCChHHHHHHHHHH
Q 030504 137 KQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 137 ~~~~~~~~~~--~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
+.....++.+ ++++++|++++.|++++|+|+.+.
T Consensus 170 ~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 170 KMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred HHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3334444433 889999999999999999999875
No 295
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.47 E-value=2.6e-13 Score=93.13 Aligned_cols=109 Identities=13% Similarity=0.135 Sum_probs=55.9
Q ss_pred EEEEEeCCCcccccccccccc--------ccccEEEEEEeCCChhhhhhH-HHHHHHHhhh-cCCCCEEEEEeCCCCCcc
Q 030504 63 RFYCWDTAGQEKFGGLRDGYY--------IHGQCAIIMFDVTARLTYKNV-PTWHRDLCRV-CENIPIVLCGNKVDVKNR 132 (176)
Q Consensus 63 ~~~~~D~~g~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~-~~~~p~liv~nK~Dl~~~ 132 (176)
.+.++|||||.+....+...- ...-++++++|+....+.... ..++..+.-. .-+.|.+.|+||+|+.+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 688999999977544333322 345688888987744321111 1112221111 138999999999999763
Q ss_pred ccCH------------------------HHHHHHHHcC-C-eEEEeccCCCCChHHHHHHHHHHH
Q 030504 133 QVKA------------------------KQVTFHRKKN-L-QYYEISAKSNYNFEKPFLYLARKL 171 (176)
Q Consensus 133 ~~~~------------------------~~~~~~~~~~-~-~~~~~S~~~~~~v~~~~~~l~~~i 171 (176)
.... +...+....+ . .++.+|+.+++|+++++..+-+.+
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 2100 0001111122 3 799999999999999999887654
No 296
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.47 E-value=1.3e-12 Score=93.31 Aligned_cols=101 Identities=10% Similarity=-0.016 Sum_probs=66.0
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCH----
Q 030504 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---- 136 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~---- 136 (176)
++.+.+.||+|....... ....+|.++++.++..+...+.... .+.+ ..-++|+||+|+.......
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E----~aDIiVVNKaDl~~~~~a~~~~~ 217 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIME----LADLIVINKADGDNKTAARRAAA 217 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhh----hhheEEeehhcccchhHHHHHHH
Confidence 467899999997633322 4567999999987665655444332 1111 2238999999987643211
Q ss_pred HHHHHHHH-------cCCeEEEeccCCCCChHHHHHHHHHHH
Q 030504 137 KQVTFHRK-------KNLQYYEISAKSNYNFEKPFLYLARKL 171 (176)
Q Consensus 137 ~~~~~~~~-------~~~~~~~~S~~~~~~v~~~~~~l~~~i 171 (176)
+....... ...+++.+||+++.|++++++++.+.+
T Consensus 218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~ 259 (332)
T PRK09435 218 EYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHR 259 (332)
T ss_pred HHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 12222221 114799999999999999999998864
No 297
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.46 E-value=3.3e-13 Score=97.12 Aligned_cols=155 Identities=18% Similarity=0.220 Sum_probs=77.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeE---EEeEEEEEecCcEEEEEEEeCCCccccccccccc-----c
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGV---EVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGY-----Y 83 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~-----~ 83 (176)
.+++|+|+|.+|+|||||+|.+.+-...+......|. +.....+. +.+.-++.+||+||..........| +
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~-~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYP-HPKFPNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCC-CCCCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 5789999999999999999997642222222222222 22222222 2233468999999965433333333 4
Q ss_pred ccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCC--cc------ccC-----HHHHHH----HHHcC
Q 030504 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK--NR------QVK-----AKQVTF----HRKKN 146 (176)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~--~~------~~~-----~~~~~~----~~~~~ 146 (176)
..-|.+|++.+-.-.. .-..+...+.+. ++|+++|-||.|.. .. ... ++.++. .++.+
T Consensus 113 ~~yD~fiii~s~rf~~---ndv~La~~i~~~--gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~g 187 (376)
T PF05049_consen 113 YRYDFFIIISSERFTE---NDVQLAKEIQRM--GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAG 187 (376)
T ss_dssp GG-SEEEEEESSS--H---HHHHHHHHHHHT--T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT
T ss_pred cccCEEEEEeCCCCch---hhHHHHHHHHHc--CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcC
Confidence 4568888766643221 112334455555 89999999999951 11 111 122222 22223
Q ss_pred ---CeEEEeccCCCC--ChHHHHHHHHHHHh
Q 030504 147 ---LQYYEISAKSNY--NFEKPFLYLARKLA 172 (176)
Q Consensus 147 ---~~~~~~S~~~~~--~v~~~~~~l~~~i~ 172 (176)
.++|-+|+.+-. ++..+.+.|.+.+.
T Consensus 188 v~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp 218 (376)
T PF05049_consen 188 VSEPQVFLVSSFDLSKYDFPKLEETLEKDLP 218 (376)
T ss_dssp -SS--EEEB-TTTTTSTTHHHHHHHHHHHS-
T ss_pred CCcCceEEEeCCCcccCChHHHHHHHHHHhH
Confidence 368889987544 57778887776654
No 298
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.45 E-value=2.7e-12 Score=87.74 Aligned_cols=140 Identities=13% Similarity=0.173 Sum_probs=82.4
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEE
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (176)
..+...|+++|.+|+|||||++.+.............|. ... ....+..+.++||||.- .. .....+.+|++
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i-~~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvV 107 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITV-VTGKKRRLTFIECPNDI--NA-MIDIAKVADLV 107 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EEE-EecCCceEEEEeCCchH--HH-HHHHHHhcCEE
Confidence 456688999999999999999987654222211112221 111 11245567899999853 11 22335789999
Q ss_pred EEEEeCCChhhhhhHHHHHHHHhhhcCCCCE-EEEEeCCCCCcccc-CH----HHHH-HHHH--cCCeEEEeccCCCCCh
Q 030504 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDVKNRQV-KA----KQVT-FHRK--KNLQYYEISAKSNYNF 160 (176)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~-liv~nK~Dl~~~~~-~~----~~~~-~~~~--~~~~~~~~S~~~~~~v 160 (176)
++|+|++....... ...+..+... +.|. ++|+||.|+..... .. +... +..+ .+.+++.+||++.-.+
T Consensus 108 llviDa~~~~~~~~-~~i~~~l~~~--g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~~ 184 (225)
T cd01882 108 LLLIDASFGFEMET-FEFLNILQVH--GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGRY 184 (225)
T ss_pred EEEEecCcCCCHHH-HHHHHHHHHc--CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCCC
Confidence 99999986543222 1223333332 6774 55999999864221 11 1111 2211 2468999999877543
No 299
>PTZ00258 GTP-binding protein; Provisional
Probab=99.45 E-value=4.3e-12 Score=92.31 Aligned_cols=86 Identities=14% Similarity=-0.023 Sum_probs=52.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCc---------------EEEEEEEeCCCcccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG---------------KIRFYCWDTAGQEKF 75 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~ 75 (176)
...++|.|+|.|++|||||.|++..........|....+.....+...+. ...+.++|+||....
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 45689999999999999999997554432111122111222222222221 235899999996532
Q ss_pred cc-------ccccccccccEEEEEEeCC
Q 030504 76 GG-------LRDGYYIHGQCAIIMFDVT 96 (176)
Q Consensus 76 ~~-------~~~~~~~~~~~~i~v~d~~ 96 (176)
.+ .....++++|++++|+|..
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 21 2223467899999999973
No 300
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.43 E-value=6.3e-13 Score=104.70 Aligned_cols=117 Identities=21% Similarity=0.205 Sum_probs=78.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCC--CCCc---------ccc---ceeEEEeEE----EEEecCcEEEEEEEeCCCcc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGE--FEKK---------YEP---TIGVEVHPL----DFFTNCGKIRFYCWDTAGQE 73 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~--~~~~---------~~~---~~~~~~~~~----~~~~~~~~~~~~~~D~~g~~ 73 (176)
...+|+++|+.++|||||+.+++... .... +.+ ..|++.... ....+.....+.++||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 45689999999999999999987421 1100 000 112222222 11224456788999999999
Q ss_pred ccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc
Q 030504 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (176)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~ 131 (176)
++.......+..+|++++|+|+......+....|. ..... +.|.++++||.|+..
T Consensus 99 df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~-~~~~~--~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLR-QALRE--RVKPVLFINKVDRLI 153 (731)
T ss_pred ChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHH-HHHHc--CCCeEEEEECchhhc
Confidence 98877778889999999999998765443333333 22232 668899999999763
No 301
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.42 E-value=6.7e-12 Score=88.18 Aligned_cols=138 Identities=17% Similarity=0.246 Sum_probs=74.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCcc----------ccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc-----
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKY----------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG----- 77 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----- 77 (176)
.++|+|+|.+|+|||||+|.++........ ..+..+.........++..+.+.++||||.-....
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 589999999999999999998765433221 12233333344444566788999999999321100
Q ss_pred --------------------ccccc--cccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc-
Q 030504 78 --------------------LRDGY--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV- 134 (176)
Q Consensus 78 --------------------~~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~- 134 (176)
..+.. =.+.|+++|.++++... +..+. +..+.+.....++|.|+.|+|......
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~~~D--i~~mk~Ls~~vNvIPvIaKaD~lt~~el 160 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LKPLD--IEFMKRLSKRVNVIPVIAKADTLTPEEL 160 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S-HHH--HHHHHHHTTTSEEEEEESTGGGS-HHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-chHHH--HHHHHHhcccccEEeEEecccccCHHHH
Confidence 00001 12468999999987532 22222 123333334788999999999765322
Q ss_pred ---CHHHHHHHHHcCCeEEEec
Q 030504 135 ---KAKQVTFHRKKNLQYYEIS 153 (176)
Q Consensus 135 ---~~~~~~~~~~~~~~~~~~S 153 (176)
........+..++.+|...
T Consensus 161 ~~~k~~i~~~l~~~~I~~f~f~ 182 (281)
T PF00735_consen 161 QAFKQRIREDLEENNIKIFDFP 182 (281)
T ss_dssp HHHHHHHHHHHHHTT--S----
T ss_pred HHHHHHHHHHHHHcCceeeccc
Confidence 2234455566777665543
No 302
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.42 E-value=4e-12 Score=90.47 Aligned_cols=114 Identities=15% Similarity=0.168 Sum_probs=79.7
Q ss_pred cEEEEEEEeCCCccccccccccccccccEEEEEEeCCChh-------hhhhHHH---HHHHHhhh--cCCCCEEEEEeCC
Q 030504 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-------TYKNVPT---WHRDLCRV--CENIPIVLCGNKV 127 (176)
Q Consensus 60 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-------s~~~~~~---~~~~~~~~--~~~~p~liv~nK~ 127 (176)
+...+.++|++||..-+.-|-+++.+++++|+|+++++-. ..+.+.. +++.+... +.+.++++++||.
T Consensus 193 k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~ 272 (354)
T KOG0082|consen 193 KGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKK 272 (354)
T ss_pred CCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecH
Confidence 5578999999999888899999999999999999999532 1222222 33333222 3689999999999
Q ss_pred CCCccc-----------------cCHHHHHHH--------HH--cCCeEEEeccCCCCChHHHHHHHHHHHhc
Q 030504 128 DVKNRQ-----------------VKAKQVTFH--------RK--KNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 128 Dl~~~~-----------------~~~~~~~~~--------~~--~~~~~~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
||-.+. ...++..+. +. ..+-.+.+.|.+-++|+.+|..+...|.+
T Consensus 273 DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~ 345 (354)
T KOG0082|consen 273 DLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQ 345 (354)
T ss_pred HHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHH
Confidence 975421 111221111 11 23557778999999999999998887654
No 303
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=3.1e-12 Score=87.98 Aligned_cols=161 Identities=16% Similarity=0.127 Sum_probs=111.0
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhc---CC-------CC----CccccceeEEEeEEEEEecCcEEEEEEEeCCCccc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLT---GE-------FE----KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~---~~-------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 74 (176)
...+++||..+|+.+.|||||..++.. .. +. .......|++.....+.++.....+...|.|||..
T Consensus 8 r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD 87 (394)
T COG0050 8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD 87 (394)
T ss_pred CCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH
Confidence 457899999999999999999988543 10 10 01122457777777777776777788999999999
Q ss_pred cccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCC-EEEEEeCCCCCccc-----cCHHHHHHHHHcCC-
Q 030504 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQ-----VKAKQVTFHRKKNL- 147 (176)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~liv~nK~Dl~~~~-----~~~~~~~~~~~~~~- 147 (176)
|-...-.-..+.|+.|+|+++++...-+...+.+ ...+. +.| +++++||+|+.++. +..+.+++...+++
T Consensus 88 YvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL-larqv--Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~ 164 (394)
T COG0050 88 YVKNMITGAAQMDGAILVVAATDGPMPQTREHIL-LARQV--GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFP 164 (394)
T ss_pred HHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh-hhhhc--CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCC
Confidence 8877777777899999999999987666655432 11222 665 67788999998632 33456677777764
Q ss_pred ----eEEEeccCCC-C-------ChHHHHHHHHHHHh
Q 030504 148 ----QYYEISAKSN-Y-------NFEKPFLYLARKLA 172 (176)
Q Consensus 148 ----~~~~~S~~~~-~-------~v~~~~~~l~~~i~ 172 (176)
+++.-|++.- + .+.++++.+...+.
T Consensus 165 gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip 201 (394)
T COG0050 165 GDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIP 201 (394)
T ss_pred CCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCC
Confidence 5666666532 2 24666666555543
No 304
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=4.8e-12 Score=98.02 Aligned_cols=129 Identities=19% Similarity=0.158 Sum_probs=97.4
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhc--CCCCC--------------ccccceeEEEeEEEEEecCc-EEEEEEEeCCCc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEK--------------KYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQ 72 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~--~~~~~--------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~ 72 (176)
.....||.|+|+-.+|||||..+++. |.... ......|++......+..++ .+.++++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 44667999999999999999999774 22111 11123467777777777767 489999999999
Q ss_pred cccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHH
Q 030504 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTF 141 (176)
Q Consensus 73 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~ 141 (176)
-.|.......++-.|++++|+|+...-..+.-..|.+.... +.|.+++.||.|....+...-...+
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~---~vp~i~fiNKmDR~~a~~~~~~~~l 152 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY---GVPRILFVNKMDRLGADFYLVVEQL 152 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhc---CCCeEEEEECccccccChhhhHHHH
Confidence 99999888999999999999999988766666666544433 8999999999998765544333333
No 305
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=3.2e-12 Score=88.89 Aligned_cols=161 Identities=16% Similarity=0.110 Sum_probs=104.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCcccc----cee--EEEe--------------EEEE--Eec------CcEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP----TIG--VEVH--------------PLDF--FTN------CGKI 62 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~----~~~--~~~~--------------~~~~--~~~------~~~~ 62 (176)
.+++||.++|+...|||||+.++.+ .+...++. .+. ..+. .+.. ... .-..
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsG-vwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R 86 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSG-VWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVR 86 (415)
T ss_pred CcceEeeeeeecccchhhheehhhc-eeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEE
Confidence 5789999999999999999998543 22111111 000 0000 0000 001 1124
Q ss_pred EEEEEeCCCccccccccccccccccEEEEEEeCCChh-hhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCH----H
Q 030504 63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----K 137 (176)
Q Consensus 63 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~----~ 137 (176)
.+.+.|.||||...+....-..-.|++++|+.++.+. .-+..+++ .. .+...-+.++++=||.|+..+.... +
T Consensus 87 ~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl-~A-leIigik~iiIvQNKIDlV~~E~AlE~y~q 164 (415)
T COG5257 87 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHL-MA-LEIIGIKNIIIVQNKIDLVSRERALENYEQ 164 (415)
T ss_pred EEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHH-HH-HhhhccceEEEEecccceecHHHHHHHHHH
Confidence 6889999999987766666556679999999999764 22333332 11 2222356788899999998754322 2
Q ss_pred HHHHHHH---cCCeEEEeccCCCCChHHHHHHHHHHHhcC
Q 030504 138 QVTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 138 ~~~~~~~---~~~~~~~~S~~~~~~v~~~~~~l~~~i~~~ 174 (176)
..+|.+. .+.+++.+||..+.|++-+++.|.+.|...
T Consensus 165 Ik~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP 204 (415)
T COG5257 165 IKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTP 204 (415)
T ss_pred HHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence 3344433 367999999999999999999999988653
No 306
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.39 E-value=1.3e-11 Score=89.26 Aligned_cols=155 Identities=16% Similarity=0.174 Sum_probs=92.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCC--------------cccccee---EEEeEEE-------E-EecCcEEEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEK--------------KYEPTIG---VEVHPLD-------F-FTNCGKIRFYC 66 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~--------------~~~~~~~---~~~~~~~-------~-~~~~~~~~~~~ 66 (176)
..+.|.++|+.++|||||+++|...-..+ -.++..| +|...+. + ..++-..++.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 46789999999999999999987651111 1122333 2222221 1 12344578899
Q ss_pred EeCCCccc--------ccc------c---------------cccccc-cccEEEEEE-eCC----ChhhhhhH-HHHHHH
Q 030504 67 WDTAGQEK--------FGG------L---------------RDGYYI-HGQCAIIMF-DVT----ARLTYKNV-PTWHRD 110 (176)
Q Consensus 67 ~D~~g~~~--------~~~------~---------------~~~~~~-~~~~~i~v~-d~~----~~~s~~~~-~~~~~~ 110 (176)
+||+|... ... - .+..+. .++..++|. |.+ .+..+... ..++..
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 99998321 111 0 112233 688888888 654 12233333 356666
Q ss_pred HhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCC--CCChHHHHHHHH
Q 030504 111 LCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKS--NYNFEKPFLYLA 168 (176)
Q Consensus 111 ~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~--~~~v~~~~~~l~ 168 (176)
+.+. ++|+++++||+|...........++..+++.+++.+|+.. .+.+..+++.++
T Consensus 176 Lk~~--~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL 233 (492)
T TIGR02836 176 LKEL--NKPFIILLNSTHPYHPETEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVL 233 (492)
T ss_pred HHhc--CCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHH
Confidence 6666 9999999999995543333333456667788888877764 335555555443
No 307
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=9.8e-12 Score=94.78 Aligned_cols=158 Identities=21% Similarity=0.214 Sum_probs=101.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccc----cceeEEEeEEEE--------EecC----cEEEEEEEeCCCcccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYE----PTIGVEVHPLDF--------FTNC----GKIRFYCWDTAGQEKF 75 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~----~~~~~~~~~~~~--------~~~~----~~~~~~~~D~~g~~~~ 75 (176)
+.-=|||+|+..+|||-|+..+..-+.+.... ..+|.++..... .-+. +---+.++|||||+.|
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 34448999999999999999866544432211 122333332221 0000 1123678999999999
Q ss_pred ccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCC-c-cc----c------------CHH
Q 030504 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK-N-RQ----V------------KAK 137 (176)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~-~-~~----~------------~~~ 137 (176)
..+......-||.+|+|+|+-.+-.-+.+ ..+..+..+ +.|+++.+||.|.. + .. . ..+
T Consensus 554 tnlRsrgsslC~~aIlvvdImhGlepqti-ESi~lLR~r--ktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~E 630 (1064)
T KOG1144|consen 554 TNLRSRGSSLCDLAILVVDIMHGLEPQTI-ESINLLRMR--KTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNE 630 (1064)
T ss_pred hhhhhccccccceEEEEeehhccCCcchh-HHHHHHHhc--CCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHH
Confidence 99999999999999999999865322222 223444444 99999999999953 1 10 0 000
Q ss_pred --------HHHHHHH-c-------------CCeEEEeccCCCCChHHHHHHHHHHHh
Q 030504 138 --------QVTFHRK-K-------------NLQYYEISAKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 138 --------~~~~~~~-~-------------~~~~~~~S~~~~~~v~~~~~~l~~~i~ 172 (176)
..+|+.+ + .++++++||.+|+|+.+++.+|++...
T Consensus 631 F~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 631 FKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ 687 (1064)
T ss_pred HHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence 0111111 0 145788999999999999999988643
No 308
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.36 E-value=1.8e-12 Score=86.15 Aligned_cols=157 Identities=18% Similarity=0.249 Sum_probs=97.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeEEEeEEEEEecCcEEEEEEEeCCCcccc-----cccccccccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-----GGLRDGYYIH 85 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-----~~~~~~~~~~ 85 (176)
..-||+++|.+|+|||++-..+..+.-. ....++..+++.....++- ....+.+||.+|++.+ .......+++
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~Rfl-Gnl~LnlwDcGgqe~fmen~~~~q~d~iF~n 81 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFL-GNLVLNLWDCGGQEEFMENYLSSQEDNIFRN 81 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhh-hhheeehhccCCcHHHHHHHHhhcchhhhee
Confidence 3468999999999999988776654421 1112222122222222111 2356889999999843 2355567889
Q ss_pred ccEEEEEEeCCChhhhhhHH---HHHHHHhhhcCCCCEEEEEeCCCCCccccCHH--------HHHHHHHcCCeEEEecc
Q 030504 86 GQCAIIMFDVTARLTYKNVP---TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK--------QVTFHRKKNLQYYEISA 154 (176)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~---~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~--------~~~~~~~~~~~~~~~S~ 154 (176)
.+++++|||+...+-...+. +.++.+.+..|...+.+..+|.|+........ ...+.+...+.++.+|.
T Consensus 82 V~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 82 VQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred heeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence 99999999999876544444 34455566667888999999999976443222 22333345577888876
Q ss_pred CCCCChHHHHHHHHHH
Q 030504 155 KSNYNFEKPFLYLARK 170 (176)
Q Consensus 155 ~~~~~v~~~~~~l~~~ 170 (176)
.+. .+-.++..++..
T Consensus 162 wDe-tl~KAWS~iv~~ 176 (295)
T KOG3886|consen 162 WDE-TLYKAWSSIVYN 176 (295)
T ss_pred hhH-HHHHHHHHHHHh
Confidence 653 333334444433
No 309
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.35 E-value=1.5e-11 Score=80.10 Aligned_cols=76 Identities=11% Similarity=0.004 Sum_probs=50.5
Q ss_pred cEEEEEEeCCChhhhhhHHHHHHHHhhhcC--CCCEEEEEeCCCCCccccC--HHHHHHHHH--cCCeEEEeccCCCCCh
Q 030504 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNRQVK--AKQVTFHRK--KNLQYYEISAKSNYNF 160 (176)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~liv~nK~Dl~~~~~~--~~~~~~~~~--~~~~~~~~S~~~~~~v 160 (176)
+.-|+|+|++..+- ...+.-| ...=++|+||.|+.+.... +....-+++ -..+++++|+++|+|+
T Consensus 119 ~~~v~VidvteGe~---------~P~K~gP~i~~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~ 189 (202)
T COG0378 119 HLRVVVIDVTEGED---------IPRKGGPGIFKADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGL 189 (202)
T ss_pred ceEEEEEECCCCCC---------CcccCCCceeEeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCH
Confidence 47788888876641 1111001 1133888999999874332 333344444 4589999999999999
Q ss_pred HHHHHHHHHHH
Q 030504 161 EKPFLYLARKL 171 (176)
Q Consensus 161 ~~~~~~l~~~i 171 (176)
+++++|+....
T Consensus 190 ~~~~~~i~~~~ 200 (202)
T COG0378 190 DEWLRFIEPQA 200 (202)
T ss_pred HHHHHHHHhhc
Confidence 99999998764
No 310
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=1.3e-11 Score=89.29 Aligned_cols=155 Identities=15% Similarity=0.059 Sum_probs=109.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC-ccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
-|+..|+-..|||||+..+.++.... .-....|++.+....+.+.......+.|.||++++-...-+.+...|.+++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 46778889999999999976554321 11223455666665555555558899999999998887777778899999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCH-HHHHHHHH---cCCeEEEeccCCCCChHHHHHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-KQVTFHRK---KNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~-~~~~~~~~---~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
++++.-..+..++. .+.........++|+||+|..+....+ ...+.... ...++|.+|+.+|+|++++.+.|..
T Consensus 82 ~~deGl~~qtgEhL--~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~ 159 (447)
T COG3276 82 AADEGLMAQTGEHL--LILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELID 159 (447)
T ss_pred eCccCcchhhHHHH--HHHHhcCCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHH
Confidence 99876655555443 222333345569999999998643222 22222222 2457899999999999999999988
Q ss_pred HH
Q 030504 170 KL 171 (176)
Q Consensus 170 ~i 171 (176)
..
T Consensus 160 L~ 161 (447)
T COG3276 160 LL 161 (447)
T ss_pred hh
Confidence 76
No 311
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.34 E-value=2.5e-11 Score=79.48 Aligned_cols=63 Identities=17% Similarity=0.197 Sum_probs=44.6
Q ss_pred EEEEEeCCCccc----cccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCC
Q 030504 63 RFYCWDTAGQEK----FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV 127 (176)
Q Consensus 63 ~~~~~D~~g~~~----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~ 127 (176)
.+.++||||... ....+..++..+|++++|.+++...+-.....+.+..... ...+++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~--~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD--KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT--CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC--CCeEEEEEcCC
Confidence 488999999643 2356777789999999999999866555555555454444 45588888984
No 312
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.30 E-value=9.2e-11 Score=84.58 Aligned_cols=83 Identities=17% Similarity=-0.014 Sum_probs=51.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCc---------------EEEEEEEeCCCcccccc-
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG---------------KIRFYCWDTAGQEKFGG- 77 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~~~- 77 (176)
++|.++|.|+||||||.|++.+.......-|....+.....+.+.+. ...+.+.|+||......
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 68999999999999999997765532111111111222222222221 13589999999643221
Q ss_pred ------ccccccccccEEEEEEeCC
Q 030504 78 ------LRDGYYIHGQCAIIMFDVT 96 (176)
Q Consensus 78 ------~~~~~~~~~~~~i~v~d~~ 96 (176)
.....++++|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1222367899999999984
No 313
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.30 E-value=6.6e-11 Score=81.09 Aligned_cols=91 Identities=9% Similarity=0.082 Sum_probs=53.8
Q ss_pred EEEEEEeCCCcccc-------------ccccccccc-cccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCC
Q 030504 62 IRFYCWDTAGQEKF-------------GGLRDGYYI-HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV 127 (176)
Q Consensus 62 ~~~~~~D~~g~~~~-------------~~~~~~~~~-~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~ 127 (176)
..+.++||||.... ..+...+++ ..+.+++|+|+...-.-+......+.+... +.|+++|+||.
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~--~~rti~ViTK~ 202 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQ--GERTIGVITKL 202 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHc--CCcEEEEEECC
Confidence 46899999997421 113344555 346899999987543323333334444333 88999999999
Q ss_pred CCCccccCHHHHHHHHH----cCCeEEEeccCC
Q 030504 128 DVKNRQVKAKQVTFHRK----KNLQYYEISAKS 156 (176)
Q Consensus 128 Dl~~~~~~~~~~~~~~~----~~~~~~~~S~~~ 156 (176)
|..++... ...+++. +...|+.+-...
T Consensus 203 D~~~~~~~--~~~~~~~~~~~l~~g~~~v~nr~ 233 (240)
T smart00053 203 DLMDEGTD--ARDILENKLLPLRRGYIGVVNRS 233 (240)
T ss_pred CCCCccHH--HHHHHhCCccccCCCEEEEECCC
Confidence 98764432 3333333 234455554443
No 314
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.29 E-value=7.9e-12 Score=92.41 Aligned_cols=158 Identities=22% Similarity=0.385 Sum_probs=119.1
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
...+++|+.|+|..++|||+|+++++.|.+.....|.-| ....++..++....+.+.|.+|... ..+-...|+
T Consensus 26 rsipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvda 98 (749)
T KOG0705|consen 26 RSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDA 98 (749)
T ss_pred cccchhheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCCch-----hhhhhhccc
Confidence 456899999999999999999999999999877565544 4555666677788888899888432 344567899
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCc--ccc--CHHHH-HHHHHcCCeEEEeccCCCCChH
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN--RQV--KAKQV-TFHRKKNLQYYEISAKSNYNFE 161 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~--~~~--~~~~~-~~~~~~~~~~~~~S~~~~~~v~ 161 (176)
+|+||...+..+|+.+..+...+.... ...|+++++++.-..- .++ ..+.. ..++-..+.+|++++.+|.++.
T Consensus 99 vIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~ 178 (749)
T KOG0705|consen 99 VVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVE 178 (749)
T ss_pred eEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHH
Confidence 999999999999988877666555332 4778888888765432 222 22223 3344467899999999999999
Q ss_pred HHHHHHHHHHhc
Q 030504 162 KPFLYLARKLAG 173 (176)
Q Consensus 162 ~~~~~l~~~i~~ 173 (176)
..|+.++.++..
T Consensus 179 rvf~~~~~k~i~ 190 (749)
T KOG0705|consen 179 RVFQEVAQKIVQ 190 (749)
T ss_pred HHHHHHHHHHHH
Confidence 999999887653
No 315
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.29 E-value=4.8e-11 Score=85.02 Aligned_cols=101 Identities=10% Similarity=0.002 Sum_probs=62.1
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHH--
Q 030504 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-- 138 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~-- 138 (176)
++.+.+.||+|.-... ......+|.++++....... .+......+ ..+|.++++||+|+.........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~~---el~~~~~~l----~~~~~ivv~NK~Dl~~~~~~~~~~~ 195 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTGD---DLQGIKAGL----MEIADIYVVNKADGEGATNVTIARL 195 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCccH---HHHHHHHHH----hhhccEEEEEcccccchhHHHHHHH
Confidence 4678899999853211 12455678888775443332 222222222 26788999999999754321110
Q ss_pred ------HHHHHH-cC--CeEEEeccCCCCChHHHHHHHHHHH
Q 030504 139 ------VTFHRK-KN--LQYYEISAKSNYNFEKPFLYLARKL 171 (176)
Q Consensus 139 ------~~~~~~-~~--~~~~~~S~~~~~~v~~~~~~l~~~i 171 (176)
..+... .+ .+++.+|++++.|++++++++.+..
T Consensus 196 ~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 196 MLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred HHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 011111 12 3589999999999999999998763
No 316
>PRK12289 GTPase RsgA; Reviewed
Probab=99.26 E-value=5e-11 Score=86.14 Aligned_cols=95 Identities=16% Similarity=0.126 Sum_probs=70.6
Q ss_pred ccccccccccccccEEEEEEeCCChh-hhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEe
Q 030504 74 KFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEI 152 (176)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 152 (176)
+...+.+..+.++|.+++|+|+.++. ....+..|+..... .+.|+++|+||+||..........+.+...++.++.+
T Consensus 78 R~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~--~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~i 155 (352)
T PRK12289 78 RKTELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES--TGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFI 155 (352)
T ss_pred cccceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEE
Confidence 34455666788999999999998765 33455666655533 4899999999999975432233334556678899999
Q ss_pred ccCCCCChHHHHHHHHHH
Q 030504 153 SAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 153 S~~~~~~v~~~~~~l~~~ 170 (176)
||+++.|++++++++...
T Consensus 156 SA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 156 SVETGIGLEALLEQLRNK 173 (352)
T ss_pred EcCCCCCHHHHhhhhccc
Confidence 999999999999988643
No 317
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.25 E-value=4.7e-11 Score=84.49 Aligned_cols=88 Identities=11% Similarity=0.074 Sum_probs=69.3
Q ss_pred ccccccccEEEEEEeCCChh-hhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCC
Q 030504 80 DGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNY 158 (176)
Q Consensus 80 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 158 (176)
+..+.++|.+++|+|+.++. ++..+..|+..+... +.|+++|+||+||.+..........+...+.+++.+|++++.
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~--~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~ 150 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA--GIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGE 150 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc--CCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCc
Confidence 34478999999999999887 777888887766654 899999999999975422222334455678899999999999
Q ss_pred ChHHHHHHHHH
Q 030504 159 NFEKPFLYLAR 169 (176)
Q Consensus 159 ~v~~~~~~l~~ 169 (176)
|+++++.++..
T Consensus 151 gi~~L~~~L~~ 161 (287)
T cd01854 151 GLDELREYLKG 161 (287)
T ss_pred cHHHHHhhhcc
Confidence 99999988764
No 318
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.25 E-value=3.2e-11 Score=78.05 Aligned_cols=93 Identities=12% Similarity=0.065 Sum_probs=64.1
Q ss_pred cccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCC
Q 030504 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKS 156 (176)
Q Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~ 156 (176)
.+.++..+++|++++|+|++++...... .+...+.. .+.|+++|+||+|+.+.........+....+.+++.+||++
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~ 80 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVLE--LGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKE 80 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHHh--CCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEccc
Confidence 3456667789999999999876533321 22222222 37899999999999643222222233344567899999999
Q ss_pred CCChHHHHHHHHHHHh
Q 030504 157 NYNFEKPFLYLARKLA 172 (176)
Q Consensus 157 ~~~v~~~~~~l~~~i~ 172 (176)
+.|++++++.+.+.+.
T Consensus 81 ~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 81 RLGTKILRRTIKELAK 96 (156)
T ss_pred cccHHHHHHHHHHHHh
Confidence 9999999999987654
No 319
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=1.4e-10 Score=87.80 Aligned_cols=116 Identities=17% Similarity=0.214 Sum_probs=80.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCc---------ccc------ceeEEEeE--EEE---EecCcEEEEEEEeCC
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK---------YEP------TIGVEVHP--LDF---FTNCGKIRFYCWDTA 70 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~---------~~~------~~~~~~~~--~~~---~~~~~~~~~~~~D~~ 70 (176)
....++.++|+-++|||+|+..+.....+.. |.. ..|.+... .+. ...++.+-++++|||
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP 205 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP 205 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence 3567899999999999999998654332211 000 01222211 111 124567889999999
Q ss_pred CccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCC
Q 030504 71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129 (176)
Q Consensus 71 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl 129 (176)
||-.+....-+.++.+|++++|+|+.+.-+++.-.- +....+ .+.|+++|.||.|.
T Consensus 206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~-ikhaiq--~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERI-IKHAIQ--NRLPIVVVINKVDR 261 (971)
T ss_pred CcccchHHHHHHhhhcceEEEEEEcccCceeeHHHH-HHHHHh--ccCcEEEEEehhHH
Confidence 999999888888999999999999998876654322 222222 38999999999994
No 320
>PRK00098 GTPase RsgA; Reviewed
Probab=99.20 E-value=1.1e-10 Score=83.12 Aligned_cols=84 Identities=15% Similarity=0.142 Sum_probs=63.9
Q ss_pred cccccEEEEEEeCCChhhhhh-HHHHHHHHhhhcCCCCEEEEEeCCCCCcc-ccCHHHHHHHHHcCCeEEEeccCCCCCh
Q 030504 83 YIHGQCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (176)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~p~liv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~S~~~~~~v 160 (176)
+.++|.+++|+|+.++..... +..|+..+.. .+.|+++|+||+|+... ....+....++..+++++.+||+++.|+
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi 155 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEGL 155 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccH
Confidence 489999999999988765444 3566655544 38999999999999632 2222334556667889999999999999
Q ss_pred HHHHHHHH
Q 030504 161 EKPFLYLA 168 (176)
Q Consensus 161 ~~~~~~l~ 168 (176)
+++++.+.
T Consensus 156 ~~L~~~l~ 163 (298)
T PRK00098 156 DELKPLLA 163 (298)
T ss_pred HHHHhhcc
Confidence 99998874
No 321
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=4.4e-10 Score=75.61 Aligned_cols=157 Identities=16% Similarity=0.150 Sum_probs=97.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc---ccccccccccEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---LRDGYYIHGQCAI 90 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~~~~i 90 (176)
-+|+++|...+|||++..-...+..+.+ .-....+.....-.+.+.-+.|.+||.||+-.+-. .....++++.+.+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPne-TlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNE-TLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCc-eeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 3499999999999999886554443322 11111111111122334567899999999876532 3445678999999
Q ss_pred EEEeCCCh--hhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCH--------HHH-HHHHH----cCCeEEEeccC
Q 030504 91 IMFDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA--------KQV-TFHRK----KNLQYYEISAK 155 (176)
Q Consensus 91 ~v~d~~~~--~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~--------~~~-~~~~~----~~~~~~~~S~~ 155 (176)
+|+|+-+. +.+..+...+....+.+++..+=++..|.|-..+.... ... +++.. ..++|+-+|..
T Consensus 107 fvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSIy 186 (347)
T KOG3887|consen 107 FVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSIY 186 (347)
T ss_pred EEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeeec
Confidence 99998764 23344444444555556889999999999955422111 111 11111 23456666655
Q ss_pred CCCChHHHHHHHHHHHh
Q 030504 156 SNYNFEKPFLYLARKLA 172 (176)
Q Consensus 156 ~~~~v~~~~~~l~~~i~ 172 (176)
...+-|+|..+++++.
T Consensus 187 -DHSIfEAFSkvVQkLi 202 (347)
T KOG3887|consen 187 -DHSIFEAFSKVVQKLI 202 (347)
T ss_pred -chHHHHHHHHHHHHHh
Confidence 4688899999988765
No 322
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.18 E-value=1.9e-10 Score=80.43 Aligned_cols=55 Identities=20% Similarity=0.161 Sum_probs=40.4
Q ss_pred CCCEEEEEeCCCCCccc--cCHHHHHHHHHc--CCeEEEeccCCCCChHHHHHHHHHHH
Q 030504 117 NIPIVLCGNKVDVKNRQ--VKAKQVTFHRKK--NLQYYEISAKSNYNFEKPFLYLARKL 171 (176)
Q Consensus 117 ~~p~liv~nK~Dl~~~~--~~~~~~~~~~~~--~~~~~~~S~~~~~~v~~~~~~l~~~i 171 (176)
..+-++|+||+|+.+.. .........+.. ..+++.+|+++|+|++++.+||..+.
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~~ 288 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQR 288 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45668999999997532 222333444443 57899999999999999999998753
No 323
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.18 E-value=2.9e-10 Score=86.86 Aligned_cols=119 Identities=10% Similarity=0.080 Sum_probs=70.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc-------c---ccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-------L---RDG 81 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~---~~~ 81 (176)
..++|+++|.+|+||||++|.+++...........+++.. ........+..+.++||||...... . ...
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~-~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~ 195 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSV-QEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKK 195 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEE-EEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHH
Confidence 4579999999999999999998865432221111122221 1111122346789999999654321 1 111
Q ss_pred ccc--cccEEEEEEeCCChhhhhhHHHHHHHHhhhcC---CCCEEEEEeCCCCCc
Q 030504 82 YYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE---NIPIVLCGNKVDVKN 131 (176)
Q Consensus 82 ~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~liv~nK~Dl~~ 131 (176)
++. .+|++++|..++.......-..+++.+...+. -..++||.|+.|...
T Consensus 196 ~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 196 FIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 223 47999999887643322222244555544442 356788899999764
No 324
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.18 E-value=1.3e-10 Score=77.63 Aligned_cols=93 Identities=17% Similarity=0.129 Sum_probs=64.7
Q ss_pred cccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHH-HHHHH-----HHcCC-
Q 030504 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFH-----RKKNL- 147 (176)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~-~~~~~-----~~~~~- 147 (176)
+...+..+++++|++++|+|++++... |...+.....+.|+++|+||+|+........ ...+. +..+.
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLK 98 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCC
Confidence 466777888999999999999875421 1112222224789999999999975433222 22222 22332
Q ss_pred --eEEEeccCCCCChHHHHHHHHHHHh
Q 030504 148 --QYYEISAKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 148 --~~~~~S~~~~~~v~~~~~~l~~~i~ 172 (176)
.++.+||+++.|++++++++.+.+.
T Consensus 99 ~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 99 PKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 6899999999999999999988653
No 325
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=1.9e-10 Score=80.86 Aligned_cols=145 Identities=18% Similarity=0.126 Sum_probs=102.7
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhc-----C-----CCCC----ccccceeEEEeEEEEEecCcEEEEEEEeCCCccc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLT-----G-----EFEK----KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~-----~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 74 (176)
.+.+++||.-+|+...|||||..++.. | .+.+ .-....|++.....+.++.....+.-.|.|||..
T Consensus 50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD 129 (449)
T KOG0460|consen 50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD 129 (449)
T ss_pred cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH
Confidence 567899999999999999999988543 1 1110 1122457777777777776667778889999999
Q ss_pred cccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc-----cCHHHHHHHHHcC---
Q 030504 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-----VKAKQVTFHRKKN--- 146 (176)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~-----~~~~~~~~~~~~~--- 146 (176)
|-...-.-..+-|++|+|+.++|...-+.-++++. .+...-..+++++||.|+.++. +..+.+++...++
T Consensus 130 YIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLL--ArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~G 207 (449)
T KOG0460|consen 130 YIKNMITGAAQMDGAILVVAATDGPMPQTREHLLL--ARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDG 207 (449)
T ss_pred HHHHhhcCccccCceEEEEEcCCCCCcchHHHHHH--HHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 87766666678899999999999876666655432 2222234578889999998533 3345567777765
Q ss_pred --CeEEEeccC
Q 030504 147 --LQYYEISAK 155 (176)
Q Consensus 147 --~~~~~~S~~ 155 (176)
++++.-||+
T Consensus 208 d~~PvI~GSAL 218 (449)
T KOG0460|consen 208 DNTPVIRGSAL 218 (449)
T ss_pred CCCCeeecchh
Confidence 567776654
No 326
>PRK12288 GTPase RsgA; Reviewed
Probab=99.15 E-value=3.7e-10 Score=81.64 Aligned_cols=86 Identities=14% Similarity=0.115 Sum_probs=68.3
Q ss_pred cccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc---CHHHHHHHHHcCCeEEEeccCCCCC
Q 030504 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQVTFHRKKNLQYYEISAKSNYN 159 (176)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~S~~~~~~ 159 (176)
..++|.+++|+++....++..+..|+..... .+.|.++|+||+|+.+... ..+....++..+++++++||+++.|
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~--~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~G 195 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET--LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEG 195 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh--cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcC
Confidence 4568999999999877888888888775544 3789999999999975432 2233345566789999999999999
Q ss_pred hHHHHHHHHHH
Q 030504 160 FEKPFLYLARK 170 (176)
Q Consensus 160 v~~~~~~l~~~ 170 (176)
++++++++...
T Consensus 196 ideL~~~L~~k 206 (347)
T PRK12288 196 LEELEAALTGR 206 (347)
T ss_pred HHHHHHHHhhC
Confidence 99999998753
No 327
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.13 E-value=3.2e-09 Score=75.57 Aligned_cols=137 Identities=16% Similarity=0.283 Sum_probs=84.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCc----------cccceeEEEeEEEEEecCcEEEEEEEeCCCcccc---ccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKK----------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF---GGL 78 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---~~~ 78 (176)
-.++|+++|+.|+|||||+|.++....... ..++..+......+..++..+.+.+.||||.-.+ ...
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 468999999999999999999876422211 2344444555555555667889999999993211 111
Q ss_pred ccc-----------------------cc--ccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc
Q 030504 79 RDG-----------------------YY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133 (176)
Q Consensus 79 ~~~-----------------------~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~ 133 (176)
|.. -+ .++|+++|.+.++. +++..+. +..+.+..+.+.++.|+.|+|.....
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~D--Ie~Mk~ls~~vNlIPVI~KaD~lT~~ 178 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLD--IEAMKRLSKRVNLIPVIAKADTLTDD 178 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHH--HHHHHHHhcccCeeeeeeccccCCHH
Confidence 111 11 14678888887663 3333333 12333333477889999999976432
Q ss_pred ----cCHHHHHHHHHcCCeEEE
Q 030504 134 ----VKAKQVTFHRKKNLQYYE 151 (176)
Q Consensus 134 ----~~~~~~~~~~~~~~~~~~ 151 (176)
.....++....+++++|.
T Consensus 179 El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 179 ELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred HHHHHHHHHHHHHHHhCCceeC
Confidence 233445666677777774
No 328
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=2.7e-09 Score=76.33 Aligned_cols=84 Identities=20% Similarity=0.104 Sum_probs=53.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEe------------c----CcEEEEEEEeCCCccc--
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT------------N----CGKIRFYCWDTAGQEK-- 74 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~----~~~~~~~~~D~~g~~~-- 74 (176)
.+++.|+|.|+||||||.|.+.........-|...++-....+.+ . .....+.++|.+|.-.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 478999999999999999998765533222222212222222111 1 1235688999998533
Q ss_pred -----cccccccccccccEEEEEEeCC
Q 030504 75 -----FGGLRDGYYIHGQCAIIMFDVT 96 (176)
Q Consensus 75 -----~~~~~~~~~~~~~~~i~v~d~~ 96 (176)
........++++|+++.|+++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 2334555678999999999977
No 329
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=4.6e-09 Score=75.18 Aligned_cols=141 Identities=17% Similarity=0.308 Sum_probs=83.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCC---------ccccceeEEEeEEEEEecCcEEEEEEEeCCCcccc---cc---
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEK---------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF---GG--- 77 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---~~--- 77 (176)
.++++++|++|.|||||+|.++...+.. ....+..+........-++-.+++++.||||.-.. ..
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 5899999999999999999976543321 11223333334444444566788999999993111 00
Q ss_pred -------------------ccccccc--cccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc--
Q 030504 78 -------------------LRDGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-- 134 (176)
Q Consensus 78 -------------------~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~-- 134 (176)
..+..+. ++|+++|.+.++. +++..+.- ..+.+......++.|..|+|......
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~g-hgL~p~Di--~~Mk~l~~~vNiIPVI~KaD~lT~~El~ 177 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTG-HGLKPLDI--EFMKKLSKKVNLIPVIAKADTLTKDELN 177 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCC-CCCcHhhH--HHHHHHhccccccceeeccccCCHHHHH
Confidence 1111222 5688888888763 33333331 22223334778888889999765332
Q ss_pred --CHHHHHHHHHcCCeEEEeccCC
Q 030504 135 --KAKQVTFHRKKNLQYYEISAKS 156 (176)
Q Consensus 135 --~~~~~~~~~~~~~~~~~~S~~~ 156 (176)
....+.-....++++|......
T Consensus 178 ~~K~~I~~~i~~~nI~vf~fp~~~ 201 (366)
T KOG2655|consen 178 QFKKRIRQDIEEHNIKVFDFPTDE 201 (366)
T ss_pred HHHHHHHHHHHHcCcceecCCCCc
Confidence 2334455666677666654443
No 330
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.08 E-value=4.2e-10 Score=78.67 Aligned_cols=149 Identities=16% Similarity=0.099 Sum_probs=90.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccc---------ccccccccc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK---------FGGLRDGYY 83 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~ 83 (176)
.--|.++|-.++|||||++++..-...++..-....+......... .+-.+-+.||.|.-. |++. ..-.
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lp-sg~~vlltDTvGFisdLP~~LvaAF~AT-LeeV 255 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLP-SGNFVLLTDTVGFISDLPIQLVAAFQAT-LEEV 255 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCC-CCcEEEEeechhhhhhCcHHHHHHHHHH-HHHH
Confidence 3468999999999999999977444333322222122222222222 233466779998321 1111 1124
Q ss_pred ccccEEEEEEeCCChhhhhhHHHHHHHHhhhc-CCCC----EEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCC
Q 030504 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIP----IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNY 158 (176)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p----~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 158 (176)
..+|.++.|.|++.|..-+.....+..+.+.- +..| ++=|-||.|........+.. + -+.+||++|+
T Consensus 256 aeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E~n------~--~v~isaltgd 327 (410)
T KOG0410|consen 256 AEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEEKN------L--DVGISALTGD 327 (410)
T ss_pred hhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccccC------C--ccccccccCc
Confidence 57899999999999976655555555555441 2223 45566788876654433321 1 3679999999
Q ss_pred ChHHHHHHHHHHH
Q 030504 159 NFEKPFLYLARKL 171 (176)
Q Consensus 159 ~v~~~~~~l~~~i 171 (176)
|++++.+.+-.++
T Consensus 328 gl~el~~a~~~kv 340 (410)
T KOG0410|consen 328 GLEELLKAEETKV 340 (410)
T ss_pred cHHHHHHHHHHHh
Confidence 9999888765544
No 331
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.07 E-value=4.9e-10 Score=82.77 Aligned_cols=112 Identities=17% Similarity=0.218 Sum_probs=75.6
Q ss_pred cEEEEEEEeCCCccccccccccccccccEEEEEEeCCChh-------hhhhHH---HHHHHHhh--hcCCCCEEEEEeCC
Q 030504 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-------TYKNVP---TWHRDLCR--VCENIPIVLCGNKV 127 (176)
Q Consensus 60 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-------s~~~~~---~~~~~~~~--~~~~~p~liv~nK~ 127 (176)
....+.++|++|+..-+..|..++.+++++|||+++++-. ....+. .++..+.. .+.+.|+++++||.
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~ 313 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI 313 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence 5567899999999998999999999999999999988432 122333 33333332 23689999999999
Q ss_pred CCCcc--------------------ccCHHHHHHHHH------------cCCeEEEeccCCCCChHHHHHHHHHHH
Q 030504 128 DVKNR--------------------QVKAKQVTFHRK------------KNLQYYEISAKSNYNFEKPFLYLARKL 171 (176)
Q Consensus 128 Dl~~~--------------------~~~~~~~~~~~~------------~~~~~~~~S~~~~~~v~~~~~~l~~~i 171 (176)
|+..+ ........+.+. ..+.++.|+|.+..+++.+|+.+.+.|
T Consensus 314 D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 314 DLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 95321 011122222222 223567899999999999998877643
No 332
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.05 E-value=1.2e-09 Score=74.67 Aligned_cols=99 Identities=8% Similarity=0.022 Sum_probs=59.1
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCH-HHH-
Q 030504 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-KQV- 139 (176)
Q Consensus 62 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~-~~~- 139 (176)
+.+.+++|.|-=..+ -....-+|.+++|..+...+..+.++.=+..+ .=++|.||+|........ +..
T Consensus 122 ~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi-------aDi~vVNKaD~~gA~~~~~~l~~ 191 (266)
T PF03308_consen 122 FDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIMEI-------ADIFVVNKADRPGADRTVRDLRS 191 (266)
T ss_dssp -SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH--------SEEEEE--SHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhhh-------ccEEEEeCCChHHHHHHHHHHHH
Confidence 556777776622111 12234679999999999887766665322222 447889999966533222 222
Q ss_pred --HHHHH--cC--CeEEEeccCCCCChHHHHHHHHHH
Q 030504 140 --TFHRK--KN--LQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 140 --~~~~~--~~--~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
.+... .+ .+++.|||.++.|++++++.+.+.
T Consensus 192 ~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 192 MLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp HHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred HHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 22111 12 489999999999999999998764
No 333
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.03 E-value=9.9e-09 Score=69.15 Aligned_cols=142 Identities=15% Similarity=0.204 Sum_probs=80.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCC---------ccccceeEEEeEEEEEecCcEEEEEEEeCCCcccc---ccccc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEK---------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF---GGLRD 80 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---~~~~~ 80 (176)
.++|+++|.+|.|||||+|.++...... .+..|..+......+..++-..++++.||||.-.. ...|.
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe 125 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE 125 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence 6899999999999999999977543221 11222222222222333455678899999993211 11222
Q ss_pred c-----------------------ccc--cccEEEEEEeCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCc---
Q 030504 81 G-----------------------YYI--HGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN--- 131 (176)
Q Consensus 81 ~-----------------------~~~--~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~--- 131 (176)
. .+. +.++++|.+.++ ++++..+. .++..+.+ -..++-|.-|+|...
T Consensus 126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~pt-GhsLrplDieflkrLt~---vvNvvPVIakaDtlTleE 201 (336)
T KOG1547|consen 126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPT-GHSLRPLDIEFLKRLTE---VVNVVPVIAKADTLTLEE 201 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCC-CCccCcccHHHHHHHhh---hheeeeeEeecccccHHH
Confidence 1 122 356666666655 44444443 23333333 456777788999543
Q ss_pred -cccCHHHHHHHHHcCCeEEEeccCCCC
Q 030504 132 -RQVKAKQVTFHRKKNLQYYEISAKSNY 158 (176)
Q Consensus 132 -~~~~~~~~~~~~~~~~~~~~~S~~~~~ 158 (176)
....+..++-+..+++.++.--+-+.+
T Consensus 202 r~~FkqrI~~el~~~~i~vYPq~~fded 229 (336)
T KOG1547|consen 202 RSAFKQRIRKELEKHGIDVYPQDSFDED 229 (336)
T ss_pred HHHHHHHHHHHHHhcCcccccccccccc
Confidence 222334456666778777765555443
No 334
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.03 E-value=6.8e-09 Score=74.36 Aligned_cols=159 Identities=13% Similarity=0.109 Sum_probs=97.8
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccce------------e----EEEeEEEE------Ee--------
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI------------G----VEVHPLDF------FT-------- 57 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~------------~----~~~~~~~~------~~-------- 57 (176)
...++++.+...|+.+.|||||+-.+..|+.+...-.+. | +++..+-+ ..
T Consensus 112 ~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE 191 (527)
T COG5258 112 EEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAE 191 (527)
T ss_pred cCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHH
Confidence 345788999999999999999999888876643322211 1 11111111 00
Q ss_pred -----cCcEEEEEEEeCCCcccccc-ccccc-cccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCC
Q 030504 58 -----NCGKIRFYCWDTAGQEKFGG-LRDGY-YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (176)
Q Consensus 58 -----~~~~~~~~~~D~~g~~~~~~-~~~~~-~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~ 130 (176)
+...--+.+.||.|||.+-. ..+.. -.+.|-.++++.+++..+--.-+++- .+.. -..|++++.||+|+.
T Consensus 192 ~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLg-i~~a--~~lPviVvvTK~D~~ 268 (527)
T COG5258 192 KAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLG-IALA--MELPVIVVVTKIDMV 268 (527)
T ss_pred HhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhh-hhhh--hcCCEEEEEEecccC
Confidence 11113478899999998743 33333 34679999999998876433222221 1122 289999999999987
Q ss_pred ccccC----HHHHHHH----------------------HH---cCCeEEEeccCCCCChHHHHHHHHH
Q 030504 131 NRQVK----AKQVTFH----------------------RK---KNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 131 ~~~~~----~~~~~~~----------------------~~---~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
++... ++...+. .+ .-.|+|.+|+.+|+|++-+.+.+..
T Consensus 269 ~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~ 336 (527)
T COG5258 269 PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLL 336 (527)
T ss_pred cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHh
Confidence 63311 1111111 11 1258999999999998877666543
No 335
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.02 E-value=9e-10 Score=70.06 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=39.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 72 (176)
+++++|.+|+|||||+|++...... ......|.+.....+..+. .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKV-SVSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCce-eeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 8999999999999999998766543 3344455555555555543 4689999995
No 336
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.02 E-value=1.2e-09 Score=79.74 Aligned_cols=94 Identities=18% Similarity=0.227 Sum_probs=68.6
Q ss_pred ccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccC-HHHH----HHHHHcC
Q 030504 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK-AKQV----TFHRKKN 146 (176)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~-~~~~----~~~~~~~ 146 (176)
.+.+..+...++..++++++|+|+.+.. ..|...+.+...+.|+++|+||+|+..+... .+.. .+++..+
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g 124 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELG 124 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcC
Confidence 4567777777888999999999987654 2234444444457899999999999754332 2222 3456667
Q ss_pred C---eEEEeccCCCCChHHHHHHHHHH
Q 030504 147 L---QYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 147 ~---~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
+ .++.+||+++.|++++++.+.+.
T Consensus 125 ~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 125 LKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred CCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 6 48999999999999999998754
No 337
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.00 E-value=1.4e-09 Score=76.07 Aligned_cols=81 Identities=16% Similarity=-0.040 Sum_probs=49.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCc---------------EEEEEEEeCCCcccccc---
Q 030504 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG---------------KIRFYCWDTAGQEKFGG--- 77 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~~~--- 77 (176)
|+++|.|+||||||.|++.+........|....+.....+.+.+. ...+.++|+||.....+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 579999999999999997765542211122111222222333222 23589999999653221
Q ss_pred ----ccccccccccEEEEEEeCC
Q 030504 78 ----LRDGYYIHGQCAIIMFDVT 96 (176)
Q Consensus 78 ----~~~~~~~~~~~~i~v~d~~ 96 (176)
.....++++|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1222357899999999874
No 338
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=4.7e-09 Score=75.00 Aligned_cols=152 Identities=16% Similarity=0.193 Sum_probs=94.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCc-----------------------cccceeEEEeEEEEEe----------c
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKK-----------------------YEPTIGVEVHPLDFFT----------N 58 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~----------~ 58 (176)
-++|++++|-..+|||||+--+..|..+.. -..+.|++.....+.+ +
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 478999999999999999876554432211 1112232222222211 1
Q ss_pred CcEEEEEEEeCCCccccccccccccc--cccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc--
Q 030504 59 CGKIRFYCWDTAGQEKFGGLRDGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-- 134 (176)
Q Consensus 59 ~~~~~~~~~D~~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~-- 134 (176)
...--++++|.+|+.+|....-..+. ..|.+.+|++++....+..-+++ -.+... +.|++++.+|.|+.++.-
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHL-gl~~AL--~iPfFvlvtK~Dl~~~~~~~ 322 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHL-GLIAAL--NIPFFVLVTKMDLVDRQGLK 322 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHH-HHHHHh--CCCeEEEEEeeccccchhHH
Confidence 12235789999999998775554443 36889999999877655444332 122222 999999999999987521
Q ss_pred ------------------------CHHHHHHHHH----cCCeEEEeccCCCCChHHHHHH
Q 030504 135 ------------------------KAKQVTFHRK----KNLQYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 135 ------------------------~~~~~~~~~~----~~~~~~~~S~~~~~~v~~~~~~ 166 (176)
..++...+++ .-.++|.+|+.+|+|++-+-..
T Consensus 323 ~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~f 382 (591)
T KOG1143|consen 323 KTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTF 382 (591)
T ss_pred HHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHH
Confidence 1122222222 2357999999999998765443
No 339
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.97 E-value=2.7e-09 Score=69.08 Aligned_cols=56 Identities=18% Similarity=0.169 Sum_probs=39.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCC
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 71 (176)
..++|+++|.+|+|||||+|++.... .....++.|.+.....+..+. .+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~-~~~~~~~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKK-VCKVAPIPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCC-ceeeCCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence 46789999999999999999976543 333355566665554444332 267999998
No 340
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=1.1e-09 Score=79.23 Aligned_cols=133 Identities=20% Similarity=0.221 Sum_probs=103.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc--C------CCCCc--------cccceeEEEeEEEEEecCcEEEEEEEeCCCcccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT--G------EFEKK--------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~--~------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 75 (176)
...+|.++.+-.+||||...|++. | ..... .....|++.+...+.+++++..+.++||||+-.|
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 455799999999999999999763 2 11111 1223578999999999999999999999999999
Q ss_pred ccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCC
Q 030504 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL 147 (176)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~ 147 (176)
+-....+++--|+++.|||.+..-.-+.+..|.+. .+. +.|..+++||.|....+........-++.+.
T Consensus 116 ~leverclrvldgavav~dasagve~qtltvwrqa-dk~--~ip~~~finkmdk~~anfe~avdsi~ekl~a 184 (753)
T KOG0464|consen 116 RLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA-DKF--KIPAHCFINKMDKLAANFENAVDSIEEKLGA 184 (753)
T ss_pred EEEHHHHHHHhcCeEEEEeccCCcccceeeeehhc-ccc--CCchhhhhhhhhhhhhhhhhHHHHHHHHhCC
Confidence 99889999999999999999988777777777543 333 8899999999998876665555555555554
No 341
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.96 E-value=9.6e-09 Score=71.40 Aligned_cols=101 Identities=12% Similarity=0.059 Sum_probs=63.5
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHH-
Q 030504 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV- 139 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~- 139 (176)
++.+.+++|.|--... -....-+|.+++|.-+.-....+.++.=+.. .-=++|+||.|..+........
T Consensus 143 G~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimE-------iaDi~vINKaD~~~A~~a~r~l~ 212 (323)
T COG1703 143 GYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIME-------IADIIVINKADRKGAEKAARELR 212 (323)
T ss_pred CCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhhh-------hhheeeEeccChhhHHHHHHHHH
Confidence 3557777777632211 1223457899998888777766666542222 2347889999976543322211
Q ss_pred ---HH----HHHcC--CeEEEeccCCCCChHHHHHHHHHHH
Q 030504 140 ---TF----HRKKN--LQYYEISAKSNYNFEKPFLYLARKL 171 (176)
Q Consensus 140 ---~~----~~~~~--~~~~~~S~~~~~~v~~~~~~l~~~i 171 (176)
.+ ....+ .+++.+||.+|+|++++++.+....
T Consensus 213 ~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~ 253 (323)
T COG1703 213 SALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHR 253 (323)
T ss_pred HHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHH
Confidence 11 22233 3799999999999999999887653
No 342
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.95 E-value=1.1e-09 Score=75.11 Aligned_cols=153 Identities=13% Similarity=0.120 Sum_probs=90.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCcc-ccceeEEEeEEEEEecCcEEEEEEEeCCCc----------ccccccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY-EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ----------EKFGGLR 79 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~----------~~~~~~~ 79 (176)
-...+++++|.+++|||+|++.++........ .++.|.+...-.+. ..-.+.+.|.||. +.+..+.
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~---v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t 210 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFH---VGKSWYEVDLPGYGRAGYGFELPADWDKFT 210 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeee---ccceEEEEecCCcccccCCccCcchHhHhH
Confidence 34688999999999999999998765443222 22444333322222 2335788999992 1222333
Q ss_pred ccccccc---cEEEEEEeCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCcccc------CHHHHH-------HH
Q 030504 80 DGYYIHG---QCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQV------KAKQVT-------FH 142 (176)
Q Consensus 80 ~~~~~~~---~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~~------~~~~~~-------~~ 142 (176)
..|+.+- --+++++|++.+- +... ..+..+.+. +.|+.+|.||||...... ...... .+
T Consensus 211 ~~Y~leR~nLv~~FLLvd~sv~i--~~~D~~~i~~~ge~--~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~ 286 (320)
T KOG2486|consen 211 KSYLLERENLVRVFLLVDASVPI--QPTDNPEIAWLGEN--NVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGV 286 (320)
T ss_pred HHHHHhhhhhheeeeeeeccCCC--CCCChHHHHHHhhc--CCCeEEeeehhhhhhhccccccCccccceeehhhccccc
Confidence 3344332 2445555655432 3232 233444554 999999999999754221 111111 12
Q ss_pred HHcCCeEEEeccCCCCChHHHHHHHHHH
Q 030504 143 RKKNLQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 143 ~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
.....+.+.+|+.++.|.++++-.+.+-
T Consensus 287 f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 287 FLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred eeccCCceeeecccccCceeeeeehhhh
Confidence 2234677889999999999988776653
No 343
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.95 E-value=3e-09 Score=69.71 Aligned_cols=56 Identities=18% Similarity=0.209 Sum_probs=41.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCC
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 71 (176)
..++++++|.+|+|||||+|++..... ....+..|+|.....+..+. .+.++||||
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~-~~~~~~pg~T~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRA-CNVGATPGVTKSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCccc-ceecCCCCeEcceEEEEeCC---CEEEEECcC
Confidence 458999999999999999999775443 23355567677655555432 478999998
No 344
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.95 E-value=1.8e-08 Score=72.17 Aligned_cols=157 Identities=15% Similarity=0.197 Sum_probs=93.3
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCC-----------------------ccccceeEEEeEEEE---------
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEK-----------------------KYEPTIGVEVHPLDF--------- 55 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~--------- 55 (176)
..+--+++++++|...+|||||+--+.+|.... ......|++..--.+
T Consensus 128 ~~DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~ 207 (641)
T KOG0463|consen 128 EKDFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHN 207 (641)
T ss_pred CccceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCc
Confidence 344568999999999999999987655543211 111111222111111
Q ss_pred -----EecCcEEEEEEEeCCCcccccccccccc--ccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCC
Q 030504 56 -----FTNCGKIRFYCWDTAGQEKFGGLRDGYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 128 (176)
Q Consensus 56 -----~~~~~~~~~~~~D~~g~~~~~~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~D 128 (176)
..++..-.++++|.+|+|+|-.....-. +-.|...+++-++..-- -.....+-.... -+.|+++|.||.|
T Consensus 208 LdWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIi-GmTKEHLgLALa--L~VPVfvVVTKID 284 (641)
T KOG0463|consen 208 LDWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGII-GMTKEHLGLALA--LHVPVFVVVTKID 284 (641)
T ss_pred ccceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccce-eccHHhhhhhhh--hcCcEEEEEEeec
Confidence 1122333578899999998865433322 23566777776664321 111111111111 2899999999999
Q ss_pred CCccccCHHHHHHHHH------------------------------cCCeEEEeccCCCCChHHHHHHH
Q 030504 129 VKNRQVKAKQVTFHRK------------------------------KNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 129 l~~~~~~~~~~~~~~~------------------------------~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
..+.++.++.+++..+ .-|++|.+|..+|+|++.+...|
T Consensus 285 MCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFL 353 (641)
T KOG0463|consen 285 MCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFL 353 (641)
T ss_pred cCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHH
Confidence 9987776665433221 22678999999999988765544
No 345
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.93 E-value=1.5e-07 Score=64.01 Aligned_cols=100 Identities=8% Similarity=0.014 Sum_probs=65.4
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc-------ccccc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-------LRDGY 82 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~ 82 (176)
....-||+++|-|++|||||+..+. +...+. ....-++..++....+..+.++++.|.||.-...+ ..-+.
T Consensus 59 KsGdaRValIGfPSVGKStlLs~iT-~T~Sea-A~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviav 136 (364)
T KOG1486|consen 59 KSGDARVALIGFPSVGKSTLLSKIT-STHSEA-ASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAV 136 (364)
T ss_pred ccCCeEEEEecCCCccHHHHHHHhh-cchhhh-hceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEE
Confidence 3467799999999999999999844 332222 22223455555555566777899999999543322 23345
Q ss_pred cccccEEEEEEeCCChhhhh-hHHHHHHHH
Q 030504 83 YIHGQCAIIMFDVTARLTYK-NVPTWHRDL 111 (176)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~-~~~~~~~~~ 111 (176)
.+.+|.+++|.|++..+.-. .+.+.++.+
T Consensus 137 ArtaDlilMvLDatk~e~qr~~le~ELe~v 166 (364)
T KOG1486|consen 137 ARTADLILMVLDATKSEDQREILEKELEAV 166 (364)
T ss_pred eecccEEEEEecCCcchhHHHHHHHHHHHh
Confidence 67899999999999765332 334444444
No 346
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.92 E-value=2.9e-09 Score=69.94 Aligned_cols=90 Identities=19% Similarity=0.146 Sum_probs=62.1
Q ss_pred cccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCC
Q 030504 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKS 156 (176)
Q Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~ 156 (176)
......+.++|.+++|+|++++....... +.....+.|.++|+||+|+.+........++.+..+..++.+|+++
T Consensus 11 ~~~~~~i~~aD~il~v~D~~~~~~~~~~~-----i~~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~iSa~~ 85 (171)
T cd01856 11 RQIKEKLKLVDLVIEVRDARIPLSSRNPL-----LEKILGNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLFVNAKS 85 (171)
T ss_pred HHHHHHHhhCCEEEEEeeccCccCcCChh-----hHhHhcCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEEEECCC
Confidence 34456678999999999998765322211 1222236799999999999643222222233444456789999999
Q ss_pred CCChHHHHHHHHHHH
Q 030504 157 NYNFEKPFLYLARKL 171 (176)
Q Consensus 157 ~~~v~~~~~~l~~~i 171 (176)
+.|++++.+.+.+.+
T Consensus 86 ~~gi~~L~~~l~~~l 100 (171)
T cd01856 86 GKGVKKLLKAAKKLL 100 (171)
T ss_pred cccHHHHHHHHHHHH
Confidence 999999999988764
No 347
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.92 E-value=1.1e-08 Score=66.15 Aligned_cols=80 Identities=16% Similarity=0.148 Sum_probs=54.9
Q ss_pred cEEEEEEeCCChhhhhhHHHHHH--HHhhhcCCCCEEEEEeCCCCCccccCHHHH-HHHHHcCCeEEEeccCCCCChHHH
Q 030504 87 QCAIIMFDVTARLTYKNVPTWHR--DLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~--~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
|++++|+|+.++.+.... ++. .+.. .++|+++|+||+|+.+.....+.. .+....+..++.+|++++.|++++
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~~--~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIERVLIKE--KGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHHHHHhc--CCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence 689999999887644422 222 2222 479999999999996532222222 222233567899999999999999
Q ss_pred HHHHHHH
Q 030504 164 FLYLARK 170 (176)
Q Consensus 164 ~~~l~~~ 170 (176)
++.+.+.
T Consensus 77 ~~~i~~~ 83 (155)
T cd01849 77 ESAFTKQ 83 (155)
T ss_pred HHHHHHH
Confidence 9988764
No 348
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.91 E-value=5.8e-09 Score=68.51 Aligned_cols=58 Identities=22% Similarity=0.212 Sum_probs=42.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 72 (176)
...++++++|.+++|||||+|++...... ...+..+.+........+ ..+.++||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVA-KVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 34579999999999999999998876553 334444556665555444 34789999994
No 349
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.90 E-value=8.5e-09 Score=65.56 Aligned_cols=75 Identities=12% Similarity=0.184 Sum_probs=53.5
Q ss_pred ccccccEEEEEEeCCChhhhh--hHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCC
Q 030504 82 YYIHGQCAIIMFDVTARLTYK--NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYN 159 (176)
Q Consensus 82 ~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 159 (176)
.+..+|++++|+|+.++.+.. .+..++... ..++|+++|+||+|+..+.........++..+..++.+||+++.+
T Consensus 8 ~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~~~~ 84 (141)
T cd01857 8 VVERSDIVVQIVDARNPLLFRPPDLERYVKEV---DPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALKENA 84 (141)
T ss_pred HHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---cCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecCCCc
Confidence 467899999999999876544 333333322 247899999999999654333344455666778899999998764
No 350
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.88 E-value=1.9e-08 Score=65.11 Aligned_cols=87 Identities=15% Similarity=0.129 Sum_probs=57.7
Q ss_pred ccccccEEEEEEeCCChhh--hhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHH-cCCeEEEeccCCCC
Q 030504 82 YYIHGQCAIIMFDVTARLT--YKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK-KNLQYYEISAKSNY 158 (176)
Q Consensus 82 ~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~ 158 (176)
.+..+|++++|+|++++.. ...+..++. ....+.|+++|+||+|+.++.........+.+ .....+.+|++.+.
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~---~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~ 81 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLK---KEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPF 81 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHHH---hccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeeccccc
Confidence 3578999999999998742 223333332 22236899999999999654322222222222 22335789999999
Q ss_pred ChHHHHHHHHHHH
Q 030504 159 NFEKPFLYLARKL 171 (176)
Q Consensus 159 ~v~~~~~~l~~~i 171 (176)
|++++++++.+..
T Consensus 82 ~~~~L~~~l~~~~ 94 (157)
T cd01858 82 GKGSLIQLLRQFS 94 (157)
T ss_pred cHHHHHHHHHHHH
Confidence 9999999987653
No 351
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.86 E-value=1.2e-08 Score=66.06 Aligned_cols=56 Identities=20% Similarity=0.226 Sum_probs=40.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCC
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 71 (176)
...+++++|.+++|||||++++..+. ...+.++.|.+........+. .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~-~~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRH-SASTSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 45789999999999999999977443 444566777665443333322 588999998
No 352
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.86 E-value=1.9e-08 Score=71.02 Aligned_cols=90 Identities=18% Similarity=0.184 Sum_probs=62.4
Q ss_pred ccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCC
Q 030504 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSN 157 (176)
Q Consensus 78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 157 (176)
.....+..+|++++|+|+.++.+.... .+... ..++|+++|+||+|+.+........+..+..+..++.+|++++
T Consensus 14 ~~~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~---l~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~ 88 (276)
T TIGR03596 14 EIKEKLKLVDVVIEVLDARIPLSSRNP--MIDEI---RGNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKALAINAKKG 88 (276)
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCCCCh--hHHHH---HCCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEECCCc
Confidence 345567889999999999876543321 11111 1378999999999996432222222334445678899999999
Q ss_pred CChHHHHHHHHHHHh
Q 030504 158 YNFEKPFLYLARKLA 172 (176)
Q Consensus 158 ~~v~~~~~~l~~~i~ 172 (176)
.|++++.+.+.+.+.
T Consensus 89 ~gi~~L~~~i~~~~~ 103 (276)
T TIGR03596 89 KGVKKIIKAAKKLLK 103 (276)
T ss_pred ccHHHHHHHHHHHHH
Confidence 999999988877654
No 353
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.84 E-value=7.7e-09 Score=69.09 Aligned_cols=57 Identities=19% Similarity=0.240 Sum_probs=41.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCC-------CccccceeEEEeEEEEEecCcEEEEEEEeCCCc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFE-------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 72 (176)
..+++++|.+|+|||||+|.++..... ....+..|+|.....+..+. .+.++||||.
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcCC
Confidence 358999999999999999998764321 12334456777776666643 4689999993
No 354
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.84 E-value=4.9e-07 Score=66.06 Aligned_cols=154 Identities=14% Similarity=0.150 Sum_probs=90.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCC--------------ccccceeEEEe----------EEEEEe-cCcEEEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEK--------------KYEPTIGVEVH----------PLDFFT-NCGKIRFYC 66 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~--------------~~~~~~~~~~~----------~~~~~~-~~~~~~~~~ 66 (176)
..+-|.++|+..+|||||+.||..--..+ =..+..|-+.. -..+.+ ++-.+++++
T Consensus 16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL 95 (492)
T PF09547_consen 16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL 95 (492)
T ss_pred CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence 46789999999999999999987621100 01111111111 112223 456788999
Q ss_pred EeCCCc--------c-----cc-cccccc---------------cccc--ccEEEEEEeCC----ChhhhhhHH-HHHHH
Q 030504 67 WDTAGQ--------E-----KF-GGLRDG---------------YYIH--GQCAIIMFDVT----ARLTYKNVP-TWHRD 110 (176)
Q Consensus 67 ~D~~g~--------~-----~~-~~~~~~---------------~~~~--~~~~i~v~d~~----~~~s~~~~~-~~~~~ 110 (176)
.|+.|. + ++ ..-|.. .+.. .-++++--|-+ .++.+..+. ..+..
T Consensus 96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E 175 (492)
T PF09547_consen 96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE 175 (492)
T ss_pred EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence 998771 1 10 111111 1111 23444444433 234444443 34555
Q ss_pred HhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCC--CChHHHHHHH
Q 030504 111 LCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSN--YNFEKPFLYL 167 (176)
Q Consensus 111 ~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~--~~v~~~~~~l 167 (176)
+.+. ++|+++++|-.+........-..++..+++.+++.+++..- +.+..+++.+
T Consensus 176 Lk~i--gKPFvillNs~~P~s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~v 232 (492)
T PF09547_consen 176 LKEI--GKPFVILLNSTKPYSEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEV 232 (492)
T ss_pred HHHh--CCCEEEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHH
Confidence 5555 99999999999887777777777888999999999887643 3444444443
No 355
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.83 E-value=1.1e-08 Score=73.50 Aligned_cols=60 Identities=23% Similarity=0.221 Sum_probs=46.8
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 73 (176)
.+..+++.++|.|+||||||+|++.+... ....+..|+|.....+..+.. +.++||||.-
T Consensus 129 ~~~~~~v~vvG~PNVGKSslIN~L~~k~~-~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGii 188 (322)
T COG1161 129 LKRKIRVGVVGYPNVGKSTLINRLLGKKV-AKTSNRPGTTKGIQWIKLDDG---IYLLDTPGII 188 (322)
T ss_pred CccceEEEEEcCCCCcHHHHHHHHhcccc-eeeCCCCceecceEEEEcCCC---eEEecCCCcC
Confidence 34568899999999999999999665443 445666688888888877654 7899999953
No 356
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.83 E-value=1.7e-08 Score=68.89 Aligned_cols=113 Identities=14% Similarity=0.142 Sum_probs=77.4
Q ss_pred cEEEEEEEeCCCccccccccccccccccEEEEEEeCCChh----------hhhhHHHHHHHHhhh--cCCCCEEEEEeCC
Q 030504 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL----------TYKNVPTWHRDLCRV--CENIPIVLCGNKV 127 (176)
Q Consensus 60 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~--~~~~p~liv~nK~ 127 (176)
..++|..+|.+|+..-+..|-+++...-++|+|+..+.-. .+++...++..+... .....+++++||.
T Consensus 200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKq 279 (379)
T KOG0099|consen 200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQ 279 (379)
T ss_pred cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHH
Confidence 5567999999999999999999999999999999987421 223334444444332 2578899999999
Q ss_pred CCCcccc-----------------------------CHHH-H-------HHHH--------HcCCeEEEeccCCCCChHH
Q 030504 128 DVKNRQV-----------------------------KAKQ-V-------TFHR--------KKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 128 Dl~~~~~-----------------------------~~~~-~-------~~~~--------~~~~~~~~~S~~~~~~v~~ 162 (176)
|+..+.+ .... . ++.+ ++.|.+..+.|.+-+++..
T Consensus 280 DllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrr 359 (379)
T KOG0099|consen 280 DLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRR 359 (379)
T ss_pred HHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHH
Confidence 9653210 0000 0 1111 0225577889999999999
Q ss_pred HHHHHHHHHh
Q 030504 163 PFLYLARKLA 172 (176)
Q Consensus 163 ~~~~l~~~i~ 172 (176)
+|+.....|.
T Consensus 360 VFnDcrdiIq 369 (379)
T KOG0099|consen 360 VFNDCRDIIQ 369 (379)
T ss_pred HHHHHHHHHH
Confidence 9998766654
No 357
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.81 E-value=2.5e-08 Score=70.79 Aligned_cols=59 Identities=20% Similarity=0.160 Sum_probs=43.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 73 (176)
...++++++|.+|+|||||+|++...... ...+..|.|.....+..+. .+.++||||..
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~-~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIA-KTGNRPGVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCcc-ccCCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence 45689999999999999999997654432 2345566666665555442 36799999974
No 358
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.81 E-value=1.7e-08 Score=71.27 Aligned_cols=58 Identities=22% Similarity=0.182 Sum_probs=42.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 72 (176)
.+.++++++|.+|+|||||+|++....... .....|+|.....+.... .+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAK-VGNRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccc-cCCCCCeecceEEEEeCC---CEEEEECCCc
Confidence 356899999999999999999977544322 244556666665555532 4689999997
No 359
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.79 E-value=4.4e-08 Score=69.53 Aligned_cols=99 Identities=18% Similarity=0.170 Sum_probs=66.4
Q ss_pred CCCccc-cccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCC
Q 030504 69 TAGQEK-FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL 147 (176)
Q Consensus 69 ~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~ 147 (176)
.|||.. ........+.++|++++|+|+.++.+.... ++... ..++|+++|+||+|+.+........+..++.+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~--~l~~~---~~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~ 81 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENP--MIDKI---IGNKPRLLILNKSDLADPEVTKKWIEYFEEQGI 81 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCCh--hHHHH---hCCCCEEEEEEchhcCCHHHHHHHHHHHHHcCC
Confidence 456532 223345567889999999999877543321 11222 137899999999999643222223344445567
Q ss_pred eEEEeccCCCCChHHHHHHHHHHHh
Q 030504 148 QYYEISAKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 148 ~~~~~S~~~~~~v~~~~~~l~~~i~ 172 (176)
.++.+|++++.|++++.+.+...+.
T Consensus 82 ~vi~vSa~~~~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 82 KALAINAKKGQGVKKILKAAKKLLK 106 (287)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHH
Confidence 8899999999999999998877654
No 360
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=4.3e-08 Score=70.05 Aligned_cols=115 Identities=21% Similarity=0.151 Sum_probs=72.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCc---cccceeEEEeEEEEEecCcE------------------------------
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKK---YEPTIGVEVHPLDFFTNCGK------------------------------ 61 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~------------------------------ 61 (176)
=|+++|.-+.|||||++.++.+.++.. ..|| +++.......+..+
T Consensus 60 mill~GqyStGKTtfi~yLle~dypg~riGpEPT--td~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~ 137 (532)
T KOG1954|consen 60 MILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPT--TDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM 137 (532)
T ss_pred eEEEEeccccchhHHHHHHHhCCCCccccCCCCC--cceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence 489999999999999999888776521 2222 22332222211111
Q ss_pred ---------EEEEEEeCCCcccccc-----------ccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEE
Q 030504 62 ---------IRFYCWDTAGQEKFGG-----------LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV 121 (176)
Q Consensus 62 ---------~~~~~~D~~g~~~~~~-----------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~l 121 (176)
-.+.++||||.-..+. ...=+..++|.+|++||+..-+--.+....+..+... .-.+-
T Consensus 138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~--EdkiR 215 (532)
T KOG1954|consen 138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH--EDKIR 215 (532)
T ss_pred HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC--cceeE
Confidence 1388999999432222 1222466899999999987654334444445555444 56688
Q ss_pred EEEeCCCCCccc
Q 030504 122 LCGNKVDVKNRQ 133 (176)
Q Consensus 122 iv~nK~Dl~~~~ 133 (176)
+|+||.|..+.+
T Consensus 216 VVLNKADqVdtq 227 (532)
T KOG1954|consen 216 VVLNKADQVDTQ 227 (532)
T ss_pred EEeccccccCHH
Confidence 889999987643
No 361
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.78 E-value=8.7e-07 Score=56.41 Aligned_cols=148 Identities=18% Similarity=0.154 Sum_probs=77.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCC-Cccc--------------c
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTA-GQEK--------------F 75 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~-g~~~--------------~ 75 (176)
...+||.+.|+|||||||++.++.. ......-... .+.+.++...++..-|.+.|+. |.+. |
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e-~L~~~g~kvg--Gf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY 79 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAE-KLREKGYKVG--GFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKY 79 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHH-HHHhcCceee--eEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceE
Confidence 4578999999999999999998542 2222111111 2334445556677778888876 3111 0
Q ss_pred cc-----------ccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccccCHHHHHHHH
Q 030504 76 GG-----------LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHR 143 (176)
Q Consensus 76 ~~-----------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~~~~~~~~~~~ 143 (176)
.. ..+..++.+|++| +|---+-. ....++...+.+.. .+.|++.++.+.+.. -.....+
T Consensus 80 ~V~v~~le~i~~~al~rA~~~aDvII--IDEIGpME-lks~~f~~~ve~vl~~~kpliatlHrrsr~------P~v~~ik 150 (179)
T COG1618 80 GVNVEGLEEIAIPALRRALEEADVII--IDEIGPME-LKSKKFREAVEEVLKSGKPLIATLHRRSRH------PLVQRIK 150 (179)
T ss_pred EeeHHHHHHHhHHHHHHHhhcCCEEE--Eecccchh-hccHHHHHHHHHHhcCCCcEEEEEecccCC------hHHHHhh
Confidence 00 0111123345544 44332221 12223333333332 388888777766441 1223334
Q ss_pred HcCCeEEEeccCCCCChHHHHHHHHHHHhc
Q 030504 144 KKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 144 ~~~~~~~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
..+.-+.. .+.+|=+.+++.+.+.+..
T Consensus 151 ~~~~v~v~---lt~~NR~~i~~~Il~~L~~ 177 (179)
T COG1618 151 KLGGVYVF---LTPENRNRILNEILSVLKG 177 (179)
T ss_pred hcCCEEEE---EccchhhHHHHHHHHHhcc
Confidence 44444443 4555555888888777654
No 362
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=1.5e-07 Score=70.94 Aligned_cols=137 Identities=13% Similarity=0.225 Sum_probs=83.0
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
..++++=++++|+||+|||||++.+.............| .++ -+.++...+++++.|. ....+ -...+-+|.
T Consensus 65 d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G----PiT-vvsgK~RRiTflEcp~--Dl~~m-iDvaKIaDL 136 (1077)
T COG5192 65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG----PIT-VVSGKTRRITFLECPS--DLHQM-IDVAKIADL 136 (1077)
T ss_pred cCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC----ceE-EeecceeEEEEEeChH--HHHHH-HhHHHhhhe
Confidence 446788899999999999999998664332211111111 111 1345777889998873 22222 223456899
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhhcCCCC-EEEEEeCCCCCccccCHHHH------HHHH--HcCCeEEEeccCC
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKAKQV------TFHR--KKNLQYYEISAKS 156 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~liv~nK~Dl~~~~~~~~~~------~~~~--~~~~~~~~~S~~~ 156 (176)
+++++|.+-.-..+.+. ++..+... +.| ++-|+|..|+......-... .++. ..|+.+|..|-..
T Consensus 137 VlLlIdgnfGfEMETmE-FLnil~~H--GmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 137 VLLLIDGNFGFEMETME-FLNILISH--GMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred eEEEeccccCceehHHH-HHHHHhhc--CCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 99999998765444443 33333333 444 78899999997644322211 1122 2478899988763
No 363
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=2.9e-08 Score=71.52 Aligned_cols=157 Identities=20% Similarity=0.206 Sum_probs=99.2
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhc--CCCC----Ccc-----------------------ccceeEEEeEEEEEec
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLT--GEFE----KKY-----------------------EPTIGVEVHPLDFFTN 58 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~--~~~~----~~~-----------------------~~~~~~~~~~~~~~~~ 58 (176)
..+..+++++++|+..+||||+-.+++. |... +.| ...-|-+.......++
T Consensus 74 ~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FE 153 (501)
T KOG0459|consen 74 EYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFE 153 (501)
T ss_pred CCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEE
Confidence 3456889999999999999999877543 1100 000 0011223333344444
Q ss_pred CcEEEEEEEeCCCccccccccccccccccEEEEEEeCCChh---hhhhHHH--HHHHHhhhcCCCCEEEEEeCCCCCccc
Q 030504 59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYKNVPT--WHRDLCRVCENIPIVLCGNKVDVKNRQ 133 (176)
Q Consensus 59 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~--~~~~~~~~~~~~p~liv~nK~Dl~~~~ 133 (176)
.....|++.|.|||..|-...-.-..++|..++|+++...+ .|+.--+ ...++.....-...++++||.|-+..+
T Consensus 154 te~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvn 233 (501)
T KOG0459|consen 154 TENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVN 233 (501)
T ss_pred ecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccC
Confidence 45567999999999998877777778999999999986432 2222111 112223333355678889999976522
Q ss_pred --------cCHHHHHHHHHcC------CeEEEeccCCCCChHHHH
Q 030504 134 --------VKAKQVTFHRKKN------LQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 134 --------~~~~~~~~~~~~~------~~~~~~S~~~~~~v~~~~ 164 (176)
...+...+.+..| ..++++|..+|.++.+..
T Consensus 234 Ws~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 234 WSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred cchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence 2223345555433 469999999999987754
No 364
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=8.7e-08 Score=73.95 Aligned_cols=115 Identities=17% Similarity=0.162 Sum_probs=83.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCC--------------CccccceeEEEeEEEEEecCcEEEEEEEeCCCccccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFE--------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG 76 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 76 (176)
....+++++-+...|||||+..++..+-. -+-..+.|++-....+..-.+.+.+.++|.|||-.|.
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~ 86 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS 86 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence 35568999999999999999987653210 0112245666666555555678889999999999999
Q ss_pred cccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCC
Q 030504 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 128 (176)
Q Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~D 128 (176)
+......+-+|++++++|+..+-.-+.... +++... .+...++|+||.|
T Consensus 87 sevssas~l~d~alvlvdvvegv~~qt~~v-lrq~~~--~~~~~~lvinkid 135 (887)
T KOG0467|consen 87 SEVSSASRLSDGALVLVDVVEGVCSQTYAV-LRQAWI--EGLKPILVINKID 135 (887)
T ss_pred hhhhhhhhhcCCcEEEEeeccccchhHHHH-HHHHHH--ccCceEEEEehhh
Confidence 999999999999999999987643333221 222221 3677788899999
No 365
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.67 E-value=8.5e-08 Score=61.97 Aligned_cols=58 Identities=17% Similarity=0.164 Sum_probs=38.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 72 (176)
....+++++|.+|+|||||+|.+....... .....+++........+ ..+.++||||.
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~-~~~~~~~t~~~~~~~~~---~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLK-VGNVPGTTTSQQEVKLD---NKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHcccccc-ccCCCCcccceEEEEec---CCEEEEECCCC
Confidence 356889999999999999999977544211 22233444444444333 24789999983
No 366
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.67 E-value=1.4e-07 Score=66.73 Aligned_cols=88 Identities=17% Similarity=0.052 Sum_probs=60.1
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecC---------------cEEEEEEEeCCCcc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC---------------GKIRFYCWDTAGQE 73 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~D~~g~~ 73 (176)
.+.+++++.|+|.|++|||||.|.+.........-|...++-....+.+.. ....++++|++|.-
T Consensus 16 R~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLv 95 (391)
T KOG1491|consen 16 RDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLV 95 (391)
T ss_pred CCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccc
Confidence 345788999999999999999999887776655445444444443333222 23578999999864
Q ss_pred cccc-------ccccccccccEEEEEEeCC
Q 030504 74 KFGG-------LRDGYYIHGQCAIIMFDVT 96 (176)
Q Consensus 74 ~~~~-------~~~~~~~~~~~~i~v~d~~ 96 (176)
+..+ -....++.+|+++-|+++.
T Consensus 96 kGAs~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 96 KGASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred cCcccCcCchHHHHHhhhhccceeEEEEec
Confidence 4322 2333467889999998865
No 367
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.67 E-value=2.2e-08 Score=67.25 Aligned_cols=117 Identities=16% Similarity=0.125 Sum_probs=76.2
Q ss_pred ecCcEEEEEEEeCCCccccccccccccccccEEEEEEeCCCh----------hhhhhHHHHHHHHhhh--cCCCCEEEEE
Q 030504 57 TNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR----------LTYKNVPTWHRDLCRV--CENIPIVLCG 124 (176)
Q Consensus 57 ~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~--~~~~p~liv~ 124 (176)
++...+.|.+.|.+|+..-+..|-+++.+.-.+++++..+.- ...++...++..+... +.+.++++++
T Consensus 194 fdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFL 273 (359)
T KOG0085|consen 194 FDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFL 273 (359)
T ss_pred cchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEe
Confidence 344556788999999988888899998888777777666532 1223333344444332 4799999999
Q ss_pred eCCCCCcccc---------------C---HHHHHHH----HHcC------CeEEEeccCCCCChHHHHHHHHHHHhc
Q 030504 125 NKVDVKNRQV---------------K---AKQVTFH----RKKN------LQYYEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 125 nK~Dl~~~~~---------------~---~~~~~~~----~~~~------~~~~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
||.|+..+.. . +.+.++. ...+ +.-..+.|.+-+|+.-+|..+...+.+
T Consensus 274 NKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq 350 (359)
T KOG0085|consen 274 NKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ 350 (359)
T ss_pred chhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHH
Confidence 9999765321 1 1122222 2222 223567888899999999988777654
No 368
>PRK01889 GTPase RsgA; Reviewed
Probab=98.63 E-value=3.3e-07 Score=66.93 Aligned_cols=82 Identities=9% Similarity=0.089 Sum_probs=58.7
Q ss_pred cccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHH--HcCCeEEEeccCCCCCh
Q 030504 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR--KKNLQYYEISAKSNYNF 160 (176)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~--~~~~~~~~~S~~~~~~v 160 (176)
..++|.+++|+++..+.....+..++...... +.|.++|+||+||.+... +..+... ..+.+++.+|++++.|+
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~--~i~piIVLNK~DL~~~~~--~~~~~~~~~~~g~~Vi~vSa~~g~gl 185 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES--GAEPVIVLTKADLCEDAE--EKIAEVEALAPGVPVLAVSALDGEGL 185 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc--CCCEEEEEEChhcCCCHH--HHHHHHHHhCCCCcEEEEECCCCccH
Confidence 57889999999997444444555555555554 778899999999975421 1111112 45789999999999999
Q ss_pred HHHHHHHH
Q 030504 161 EKPFLYLA 168 (176)
Q Consensus 161 ~~~~~~l~ 168 (176)
+++..++.
T Consensus 186 ~~L~~~L~ 193 (356)
T PRK01889 186 DVLAAWLS 193 (356)
T ss_pred HHHHHHhh
Confidence 99988874
No 369
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.61 E-value=1.2e-06 Score=62.95 Aligned_cols=96 Identities=10% Similarity=0.009 Sum_probs=58.4
Q ss_pred cEEEEEEEeCCCccccccc--------cc----cccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCC
Q 030504 60 GKIRFYCWDTAGQEKFGGL--------RD----GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV 127 (176)
Q Consensus 60 ~~~~~~~~D~~g~~~~~~~--------~~----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~ 127 (176)
..+.+.++||||....... .+ ..-...+..++|.|++... +.+.+ .....+. -.+.-+|+||.
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~--~~~~giIlTKl 269 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEA--VGLTGIILTKL 269 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhh--CCCCEEEEECC
Confidence 3467899999996432211 10 1112467889999998643 22221 1222221 23457788999
Q ss_pred CCCccccCHHHHHHHHHcCCeEEEeccCCCCChHHHH
Q 030504 128 DVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 128 Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~ 164 (176)
|-... .-.....+...++|+..++ +|++++++-
T Consensus 270 D~t~~--~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 270 DGTAK--GGVVFAIADELGIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred CCCCC--ccHHHHHHHHHCCCEEEEe--CCCChhhCc
Confidence 95432 3355677778899999987 888887754
No 370
>PRK13796 GTPase YqeH; Provisional
Probab=98.60 E-value=4.5e-07 Score=66.51 Aligned_cols=80 Identities=23% Similarity=0.295 Sum_probs=56.6
Q ss_pred ccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCH-HHH----HHHHHcCC---eEEEeccCCC
Q 030504 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-KQV----TFHRKKNL---QYYEISAKSN 157 (176)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~-~~~----~~~~~~~~---~~~~~S~~~~ 157 (176)
.+.+++|+|+.+.. ..|...+.+...+.|+++|+||+|+.+..... ... .+++..++ .++.+||+++
T Consensus 70 ~~lIv~VVD~~D~~-----~s~~~~L~~~~~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g 144 (365)
T PRK13796 70 DALVVNVVDIFDFN-----GSWIPGLHRFVGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKG 144 (365)
T ss_pred CcEEEEEEECccCC-----CchhHHHHHHhCCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCC
Confidence 34999999998743 22344444444578999999999997543322 222 33455565 5899999999
Q ss_pred CChHHHHHHHHHH
Q 030504 158 YNFEKPFLYLARK 170 (176)
Q Consensus 158 ~~v~~~~~~l~~~ 170 (176)
.|++++++.+.+.
T Consensus 145 ~gI~eL~~~I~~~ 157 (365)
T PRK13796 145 HGIDELLEAIEKY 157 (365)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999999765
No 371
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.60 E-value=5.7e-08 Score=62.46 Aligned_cols=59 Identities=27% Similarity=0.333 Sum_probs=32.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCC------ccccceeEEEeEEEEEecCcEEEEEEEeCCCcccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEK------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 75 (176)
-.++++|++|||||||+|.++...... .......++.....+..+... .+.||||...+
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~---~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGG---YIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSE---EEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCc---EEEECCCCCcc
Confidence 468999999999999999977642211 111112233334444443333 57899996543
No 372
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=1.2e-06 Score=59.74 Aligned_cols=115 Identities=16% Similarity=0.135 Sum_probs=64.8
Q ss_pred EEEEEcCCCC--cHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 15 KLVIVGDGGT--GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 15 ~i~i~G~~~~--GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
.++++|-+|+ ||.+|+.++..-.+.....+.-.+.+..+++........+.+.-.+-...+.-..........++++|
T Consensus 6 ~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~vmv 85 (418)
T KOG4273|consen 6 CALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFVMV 85 (418)
T ss_pred eEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEEEE
Confidence 5789999998 99999999776655443333323333333332111111222222121122211122223445789999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhcCCCC-EEEEEeCCCCCc
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKN 131 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~p-~liv~nK~Dl~~ 131 (176)
||.+....+..+..|+....-. ... .+.++||.|..+
T Consensus 86 fdlse~s~l~alqdwl~htdin--sfdillcignkvdrvp 123 (418)
T KOG4273|consen 86 FDLSEKSGLDALQDWLPHTDIN--SFDILLCIGNKVDRVP 123 (418)
T ss_pred EeccchhhhHHHHhhccccccc--cchhheeccccccccc
Confidence 9999998888888887543221 222 466789998654
No 373
>PRK12288 GTPase RsgA; Reviewed
Probab=98.57 E-value=2e-07 Score=67.68 Aligned_cols=58 Identities=19% Similarity=0.234 Sum_probs=35.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCc--c----ccceeEEEeEEEEEecCcEEEEEEEeCCCccccc
Q 030504 16 LVIVGDGGTGKTTFVKRHLTGEFEKK--Y----EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG 76 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 76 (176)
++|+|.+|||||||+|+++....... . .....+|.....+...... .++||||...+.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence 78999999999999999775432211 0 1111233344444443332 489999977543
No 374
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=6.4e-08 Score=67.58 Aligned_cols=109 Identities=14% Similarity=0.124 Sum_probs=72.8
Q ss_pred EEEEEeCCCccccccccccccccccEEEEEEeCCChh-hhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHH----
Q 030504 63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK---- 137 (176)
Q Consensus 63 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~---- 137 (176)
.+.+.|.|||+-..+....-..-.|++++++..+.+. .-+..+++. .+.-. .=+.++++-||.||..+....+
T Consensus 126 HVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLa-aveiM-~LkhiiilQNKiDli~e~~A~eq~e~ 203 (466)
T KOG0466|consen 126 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLA-AVEIM-KLKHIIILQNKIDLIKESQALEQHEQ 203 (466)
T ss_pred EEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHH-HHHHh-hhceEEEEechhhhhhHHHHHHHHHH
Confidence 5778899999876655554444558888888877532 233333321 11111 1346888899999987554332
Q ss_pred HHHHHHH---cCCeEEEeccCCCCChHHHHHHHHHHHhc
Q 030504 138 QVTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 138 ~~~~~~~---~~~~~~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
...+.+. .+.+++.+||....|++-+.++++++|..
T Consensus 204 I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPv 242 (466)
T KOG0466|consen 204 IQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPV 242 (466)
T ss_pred HHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCC
Confidence 2344333 36799999999999999999999998764
No 375
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.57 E-value=2.5e-07 Score=67.11 Aligned_cols=82 Identities=15% Similarity=-0.128 Sum_probs=52.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC-CC-ccccceeEEEeEEEEEecC---------------cEEEEEEEeCCCccccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEF-EK-KYEPTIGVEVHPLDFFTNC---------------GKIRFYCWDTAGQEKFG 76 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~D~~g~~~~~ 76 (176)
+++.|+|.|++|||||.+.+..... .. +|..+ ..+.....+.+.+ ....+.+.|+||.....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypft-Ti~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFT-TIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCC-CCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence 7899999999999999999766554 22 22211 1122222222222 12467889999965422
Q ss_pred -------cccccccccccEEEEEEeCC
Q 030504 77 -------GLRDGYYIHGQCAIIMFDVT 96 (176)
Q Consensus 77 -------~~~~~~~~~~~~~i~v~d~~ 96 (176)
......++.+|+++.|++..
T Consensus 82 s~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 82 SKGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred hcccCcchHHHHHHHhCCEEEEEEeCC
Confidence 23344578899999999985
No 376
>PRK13796 GTPase YqeH; Provisional
Probab=98.55 E-value=1.5e-07 Score=68.93 Aligned_cols=58 Identities=19% Similarity=0.263 Sum_probs=41.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCC----CCccccceeEEEeEEEEEecCcEEEEEEEeCCCcc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEF----EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 73 (176)
..++.++|.+|||||||+|+++.... ....++..|+|.....+..++. ..++||||..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence 34799999999999999999875321 1123455677777776666433 3689999963
No 377
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=98.54 E-value=4.2e-07 Score=47.46 Aligned_cols=45 Identities=13% Similarity=0.318 Sum_probs=32.8
Q ss_pred ccccEEEEEEeCCCh--hhhhhHHHHHHHHhhhcCCCCEEEEEeCCC
Q 030504 84 IHGQCAIIMFDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVD 128 (176)
Q Consensus 84 ~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~p~liv~nK~D 128 (176)
.-.++++|++|++.. .+.+....++..+...++++|+++|.||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 346899999999964 466777788899999999999999999998
No 378
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=3.3e-07 Score=69.31 Aligned_cols=120 Identities=21% Similarity=0.266 Sum_probs=88.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc--CCCC------C--------ccccceeEEEeEEEEEecCcEEEEEEEeCCCcccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT--GEFE------K--------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~--~~~~------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 75 (176)
...+|.+.-+=.+||||+.++.+. |+.. . ......|++.+..-.+..++.+++.++|||||-.|
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 345677777888999999999664 2110 0 01112356666666667777899999999999999
Q ss_pred ccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc
Q 030504 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (176)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~ 134 (176)
.......++--|++++|++...+-.-+....|.+ +.+. +.|.+.++||.|.-....
T Consensus 118 T~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ-~~ry--~vP~i~FiNKmDRmGa~~ 173 (721)
T KOG0465|consen 118 TFEVERALRVLDGAVLVLDAVAGVESQTETVWRQ-MKRY--NVPRICFINKMDRMGASP 173 (721)
T ss_pred EEEehhhhhhccCeEEEEEcccceehhhHHHHHH-HHhc--CCCeEEEEehhhhcCCCh
Confidence 8888888889999999999987765555555643 3444 999999999999876554
No 379
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.52 E-value=3e-07 Score=76.45 Aligned_cols=111 Identities=18% Similarity=0.206 Sum_probs=64.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCcc----cc--ceeEEEeEEEEEecCcEEEEEEEeCCCcc--------cccccccc
Q 030504 16 LVIVGDGGTGKTTFVKRHLTGEFEKKY----EP--TIGVEVHPLDFFTNCGKIRFYCWDTAGQE--------KFGGLRDG 81 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~ 81 (176)
.+|+|++|+||||++++ .+-.++-.. .. ..+-+..+- ..+.+ .-.++||+|.- .....|..
T Consensus 114 YlviG~~gsGKtt~l~~-sgl~~pl~~~~~~~~~~~~~~t~~c~-wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQN-SGLKFPLAERLGAAALRGVGGTRNCD-WWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHh-CCCCCcCchhhccccccCCCCCcccc-eEecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence 68999999999999997 444442210 11 111122111 11222 23488999932 12234555
Q ss_pred ccc---------cccEEEEEEeCCChhh--h-------hhHHHHHHHHhhhc-CCCCEEEEEeCCCCCc
Q 030504 82 YYI---------HGQCAIIMFDVTARLT--Y-------KNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN 131 (176)
Q Consensus 82 ~~~---------~~~~~i~v~d~~~~~s--~-------~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~ 131 (176)
++. ..+++|+++|+.+--. - ..+...+..+.+.. -..|+.++.||+|+..
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 432 3799999999885321 1 12223334444333 4899999999999864
No 380
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.51 E-value=1.3e-06 Score=59.93 Aligned_cols=87 Identities=16% Similarity=0.112 Sum_probs=51.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcC--CCCCc---cccceeEEEeEEEEEecCcEEEEEEEeCCCccccccc------c
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKK---YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL------R 79 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~ 79 (176)
.+-.-|.|+|++++|||+|+|+++.. .+... ...|.|+-........ +....+.++||+|....... .
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~~ 83 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDAR 83 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhhH
Confidence 35567999999999999999998877 44322 1122232222111111 23467899999996543221 1
Q ss_pred cccccc--ccEEEEEEeCCCh
Q 030504 80 DGYYIH--GQCAIIMFDVTAR 98 (176)
Q Consensus 80 ~~~~~~--~~~~i~v~d~~~~ 98 (176)
...+.. ++.+||..+....
T Consensus 84 ~~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 84 LFALATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHHHHhCEEEEeccCccc
Confidence 122223 7888887777643
No 381
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.51 E-value=3.5e-07 Score=66.95 Aligned_cols=58 Identities=19% Similarity=0.285 Sum_probs=40.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC----CCccccceeEEEeEEEEEecCcEEEEEEEeCCCccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEF----EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 74 (176)
.++.++|.+|||||||+|+++.... ....++..|+|.....+..+.. +.++||||...
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~---~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDG---HSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCC---CEEEECCCCCC
Confidence 4899999999999999999876332 1233445566666665555322 46999999653
No 382
>PRK12289 GTPase RsgA; Reviewed
Probab=98.51 E-value=2.7e-07 Score=67.05 Aligned_cols=56 Identities=23% Similarity=0.274 Sum_probs=35.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccccee-------EEEeEEEEEecCcEEEEEEEeCCCccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG-------VEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~D~~g~~~ 74 (176)
-++|+|++|||||||+|+++...... .....+ +|.....+...... .++||||...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~-t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~ 236 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELR-VGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQ 236 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccc-cccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCccc
Confidence 38999999999999999977543221 111112 44444444444333 5899999654
No 383
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.50 E-value=1.1e-06 Score=61.87 Aligned_cols=98 Identities=11% Similarity=-0.033 Sum_probs=59.4
Q ss_pred cEEEEEEEeCCCccccccccc------------cccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCC
Q 030504 60 GKIRFYCWDTAGQEKFGGLRD------------GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV 127 (176)
Q Consensus 60 ~~~~~~~~D~~g~~~~~~~~~------------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~ 127 (176)
..+.+.++||+|......... ..-...|..++|+|++... +.+ .....+.+. -.+.-+|.||.
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~-~~~~~f~~~--~~~~g~IlTKl 227 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NAL-EQAKVFNEA--VGLTGIILTKL 227 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHH-HHHHHHHhh--CCCCEEEEEcc
Confidence 346789999999654322111 1112479999999997542 222 222233322 12457778999
Q ss_pred CCCccccCHHHHHHHHHcCCeEEEeccCCCCChHHHHHH
Q 030504 128 DVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 128 Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 166 (176)
|..... ..........+.|+..++ +|++++++..+
T Consensus 228 De~~~~--G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~~ 262 (272)
T TIGR00064 228 DGTAKG--GIILSIAYELKLPIKFIG--VGEKIDDLAPF 262 (272)
T ss_pred CCCCCc--cHHHHHHHHHCcCEEEEe--CCCChHhCccC
Confidence 985443 244556667788888887 78888776443
No 384
>PRK14974 cell division protein FtsY; Provisional
Probab=98.48 E-value=1.7e-07 Score=67.58 Aligned_cols=96 Identities=15% Similarity=0.052 Sum_probs=57.6
Q ss_pred EEEEEEEeCCCcccccc-ccc---cc--cccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc
Q 030504 61 KIRFYCWDTAGQEKFGG-LRD---GY--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~-~~~---~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~ 134 (176)
++.+.++||+|...... ... .. ..+.|..++|.|+.... ........+.+. -..--+|+||.|.....
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~---d~~~~a~~f~~~--~~~~giIlTKlD~~~~~- 295 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN---DAVEQAREFNEA--VGIDGVILTKVDADAKG- 295 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch---hHHHHHHHHHhc--CCCCEEEEeeecCCCCc-
Confidence 35689999999653221 111 11 12568889999987643 222222222221 22346678999986433
Q ss_pred CHHHHHHHHHcCCeEEEeccCCCCChHHHHH
Q 030504 135 KAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (176)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 165 (176)
-.....+...+.|+..++ +|++++++..
T Consensus 296 -G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 296 -GAALSIAYVIGKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred -cHHHHHHHHHCcCEEEEe--CCCChhhccc
Confidence 244555666788888887 7999987654
No 385
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.47 E-value=6.5e-07 Score=61.88 Aligned_cols=116 Identities=17% Similarity=0.295 Sum_probs=69.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCcc----ccceeEEEeEEEEEecCcEEEEEEEeCCCcc-------ccccc--
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY----EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE-------KFGGL-- 78 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-------~~~~~-- 78 (176)
-.++|+-+|..|.|||||+..+++-.+.... .|........+...-.+-.+++++.||.|.- .|..+
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd 120 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD 120 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence 3689999999999999999998876664332 2333444444444445667889999999821 11111
Q ss_pred -----ccc-------------ccc--cccEEEEEEeCCChhhhhhHHHH-HHHHhhhcCCCCEEEEEeCCCCCc
Q 030504 79 -----RDG-------------YYI--HGQCAIIMFDVTARLTYKNVPTW-HRDLCRVCENIPIVLCGNKVDVKN 131 (176)
Q Consensus 79 -----~~~-------------~~~--~~~~~i~v~d~~~~~s~~~~~~~-~~~~~~~~~~~p~liv~nK~Dl~~ 131 (176)
..+ .+. +.++++|.+.++ ++++..+... ...+. ....+|.++-|.|...
T Consensus 121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PT-GH~LKslDLvtmk~Ld---skVNIIPvIAKaDtis 190 (406)
T KOG3859|consen 121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPT-GHSLKSLDLVTMKKLD---SKVNIIPVIAKADTIS 190 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCC-CcchhHHHHHHHHHHh---hhhhhHHHHHHhhhhh
Confidence 111 122 346666666665 4455555421 22222 2556677777888654
No 386
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.44 E-value=3.6e-06 Score=62.53 Aligned_cols=142 Identities=13% Similarity=0.065 Sum_probs=74.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc-----CCC-----CCccc-----------cceeEEEeEEEEEec------------
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT-----GEF-----EKKYE-----------PTIGVEVHPLDFFTN------------ 58 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~-----~~~-----~~~~~-----------~~~~~~~~~~~~~~~------------ 58 (176)
++.-|+++|++||||||++..+.. |.- ...+. ...+..+.......+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 357799999999999999988642 210 00111 001111111000000
Q ss_pred -CcEEEEEEEeCCCcccccc-cccc-----ccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc
Q 030504 59 -CGKIRFYCWDTAGQEKFGG-LRDG-----YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (176)
Q Consensus 59 -~~~~~~~~~D~~g~~~~~~-~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~ 131 (176)
...+.+.++||+|...... .... -....+.+++|+|+..... .......+.+. -.+--+|+||.|-..
T Consensus 179 ~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~---a~~~a~~F~~~--~~~~g~IlTKlD~~a 253 (429)
T TIGR01425 179 KKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQA---AEAQAKAFKDS--VDVGSVIITKLDGHA 253 (429)
T ss_pred HhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChh---HHHHHHHHHhc--cCCcEEEEECccCCC
Confidence 1246789999999643221 1111 1235688999999875432 22222333322 235677789999854
Q ss_pred cccCHHHHHHHHHcCCeEEEeccCCCCChHH
Q 030504 132 RQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
+. -.........+.|+..++ +|+.+++
T Consensus 254 rg--G~aLs~~~~t~~PI~fig--~Ge~v~D 280 (429)
T TIGR01425 254 KG--GGALSAVAATKSPIIFIG--TGEHIDD 280 (429)
T ss_pred Cc--cHHhhhHHHHCCCeEEEc--CCCChhh
Confidence 32 233455556666665553 3444433
No 387
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.43 E-value=5.8e-07 Score=62.40 Aligned_cols=57 Identities=19% Similarity=0.176 Sum_probs=35.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCc--c----ccceeEEEeEEEEEecCcEEEEEEEeCCCccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKK--Y----EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 74 (176)
-.++++|.+|||||||+|+++....... . ....++|.....+... .+ .++||||...
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~-~~---~liDtPG~~~ 183 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFH-GG---LIADTPGFNE 183 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcC-Cc---EEEeCCCccc
Confidence 3689999999999999999775432211 1 1111234444444442 22 6899999764
No 388
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.41 E-value=5.2e-06 Score=58.46 Aligned_cols=95 Identities=18% Similarity=0.052 Sum_probs=70.2
Q ss_pred ccccccccccccccEEEEEEeCCChh-hhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCH--HHHHHHHHcCCeEE
Q 030504 74 KFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA--KQVTFHRKKNLQYY 150 (176)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~ 150 (176)
+-..+.+....+.|-.++|+.+.+|. +...+..++-..... +..-++++||.||.+..... +....++..+.+.+
T Consensus 68 Rkn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~--gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~ 145 (301)
T COG1162 68 RKNVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG--GIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVL 145 (301)
T ss_pred ccCceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc--CCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEE
Confidence 33445555566688888888888876 444555554444443 77778889999998765544 45677888999999
Q ss_pred EeccCCCCChHHHHHHHHHH
Q 030504 151 EISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 151 ~~S~~~~~~v~~~~~~l~~~ 170 (176)
.+|+++++|++++..++...
T Consensus 146 ~~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 146 FVSAKNGDGLEELAELLAGK 165 (301)
T ss_pred EecCcCcccHHHHHHHhcCC
Confidence 99999999999998887543
No 389
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=8.6e-06 Score=62.70 Aligned_cols=66 Identities=14% Similarity=0.246 Sum_probs=39.6
Q ss_pred EEEEeCCCccc---cccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcc
Q 030504 64 FYCWDTAGQEK---FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132 (176)
Q Consensus 64 ~~~~D~~g~~~---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~ 132 (176)
+.+.|.||... ..+-...+-..+|++|+|.++.+.-+ ....+++....+. ...+.|+.||.|....
T Consensus 208 ivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt-~sek~Ff~~vs~~--KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 208 IVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLT-LSEKQFFHKVSEE--KPNIFILNNKWDASAS 276 (749)
T ss_pred ceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhH-HHHHHHHHHhhcc--CCcEEEEechhhhhcc
Confidence 55677787543 23334445568999999999865532 2223444444443 4446666788898654
No 390
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.40 E-value=7.1e-07 Score=62.69 Aligned_cols=59 Identities=25% Similarity=0.314 Sum_probs=36.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC------CCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF------EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG 76 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 76 (176)
-.+++|.+|||||||+|++..... .........+|....-+..+..+ .+.||||...+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence 578999999999999999764221 11111222234444444454344 478999976543
No 391
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.32 E-value=2e-06 Score=61.18 Aligned_cols=59 Identities=25% Similarity=0.220 Sum_probs=36.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcc------ccceeEEEeEEEEEecCcEEEEEEEeCCCcccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKY------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 75 (176)
-.++++|++|+|||||+|.++........ ....+++.....+...... .++||||...+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~---~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGG---LLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCC---EEEECCCCCcc
Confidence 57999999999999999997754322110 1111233333344443222 58999998754
No 392
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.31 E-value=3e-06 Score=54.89 Aligned_cols=21 Identities=43% Similarity=0.529 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 030504 16 LVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~~ 36 (176)
++++|..|+|||||+++++..
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 578999999999999987754
No 393
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.27 E-value=5e-06 Score=57.06 Aligned_cols=91 Identities=19% Similarity=0.154 Sum_probs=63.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccc-------cccccccccc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-------GGLRDGYYIH 85 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~~ 85 (176)
.-+|-++|-|++||||++.. +.|.+.+. .+..+.+..+.......+..++++.|.||.-+. ....-+..+.
T Consensus 59 ~a~vg~vgFPSvGksTl~~~-l~g~~s~v-asyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavart 136 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSK-LTGTFSEV-AAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVART 136 (358)
T ss_pred ceeeeEEecCccchhhhhhh-hcCCCCcc-ccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeec
Confidence 34899999999999999998 55655443 334444555554444556778999999995322 1234455678
Q ss_pred ccEEEEEEeCCChhhhhhHH
Q 030504 86 GQCAIIMFDVTARLTYKNVP 105 (176)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~ 105 (176)
++.+++|.|+..|-+-..+.
T Consensus 137 cnli~~vld~~kp~~hk~~i 156 (358)
T KOG1487|consen 137 CNLIFIVLDVLKPLSHKKII 156 (358)
T ss_pred ccEEEEEeeccCcccHHHHH
Confidence 99999999999886555443
No 394
>PRK00098 GTPase RsgA; Reviewed
Probab=98.25 E-value=3.2e-06 Score=60.42 Aligned_cols=57 Identities=21% Similarity=0.129 Sum_probs=34.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccce-------eEEEeEEEEEecCcEEEEEEEeCCCccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI-------GVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 74 (176)
..++++|++|+|||||+|.++....... .... .++.....+..+.. ..++||||...
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~-g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~ 228 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKT-GEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS 228 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCC-cceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence 4589999999999999999765332211 1111 12333333333322 36899999654
No 395
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.24 E-value=1e-05 Score=52.86 Aligned_cols=137 Identities=20% Similarity=0.300 Sum_probs=61.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeC-CCcc--------------------
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT-AGQE-------------------- 73 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~-~g~~-------------------- 73 (176)
||++.|++|+|||||+++++..- .....+..|+ .+.....++...-|.+.|. .|.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l-~~~~~~v~Gf--~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL-KKKGLPVGGF--YTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH-HHTCGGEEEE--EEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHh-hccCCccceE--EeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 68999999999999999966322 1111223332 2222333445555666666 3311
Q ss_pred --cccccccccccc--ccEEEEEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccccCHHHHHHHHHcCCe
Q 030504 74 --KFGGLRDGYYIH--GQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ 148 (176)
Q Consensus 74 --~~~~~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~ 148 (176)
.+.......+.. .+.=++|+|---+- ......|.+.+.... +++|++.++.+.. ...-..++....++.
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~liviDEIG~m-El~~~~F~~~v~~~l~s~~~vi~vv~~~~-----~~~~l~~i~~~~~~~ 151 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSDLIVIDEIGKM-ELKSPGFREAVEKLLDSNKPVIGVVHKRS-----DNPFLEEIKRRPDVK 151 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCHEEEE---STT-CCC-CHHHHHHHHHHCTTSEEEEE--SS-------SCCHHHHHTTTTSE
T ss_pred HHHHHHHHHHHHHhhcCCCCEEEEeccchh-hhcCHHHHHHHHHHHcCCCcEEEEEecCC-----CcHHHHHHHhCCCcE
Confidence 111111112222 12236666643221 112223334443333 4788888776662 111123444455677
Q ss_pred EEEeccCCCCCh
Q 030504 149 YYEISAKSNYNF 160 (176)
Q Consensus 149 ~~~~S~~~~~~v 160 (176)
+++++....+-+
T Consensus 152 i~~vt~~NRd~l 163 (168)
T PF03266_consen 152 IFEVTEENRDAL 163 (168)
T ss_dssp EEE--TTTCCCH
T ss_pred EEEeChhHHhhH
Confidence 888766554443
No 396
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.23 E-value=9.3e-06 Score=53.40 Aligned_cols=84 Identities=10% Similarity=0.017 Sum_probs=46.0
Q ss_pred EEEEEEEeCCCccccccc----cccc--cccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc
Q 030504 61 KIRFYCWDTAGQEKFGGL----RDGY--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~----~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~ 134 (176)
...+.+.|++|....... ...+ ....+.+++|+|+..... ...+...+.+.. + ..-+|.||.|...+.-
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~-~-~~~viltk~D~~~~~g 156 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL-G-ITGVILTKLDGDARGG 156 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC-C-CCEEEEECCcCCCCcc
Confidence 445788999996432111 1111 134899999999865432 223333333322 2 3566779999765332
Q ss_pred CHHHHHHHHHcCCeEEE
Q 030504 135 KAKQVTFHRKKNLQYYE 151 (176)
Q Consensus 135 ~~~~~~~~~~~~~~~~~ 151 (176)
...+.+...++++..
T Consensus 157 --~~~~~~~~~~~p~~~ 171 (173)
T cd03115 157 --AALSIRAVTGKPIKF 171 (173)
T ss_pred --hhhhhHHHHCcCeEe
Confidence 223455556655443
No 397
>PRK13695 putative NTPase; Provisional
Probab=98.21 E-value=7.8e-05 Score=49.09 Aligned_cols=21 Identities=43% Similarity=0.582 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
+||+++|++|+|||||+..+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~ 21 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIA 21 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999854
No 398
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.19 E-value=8.7e-06 Score=61.51 Aligned_cols=69 Identities=14% Similarity=0.141 Sum_probs=44.7
Q ss_pred EEEEEeCCCc-------------cccccccccccccccEEEEEEeCCChhhhh-hHHHHHHHHhhhcCCCCEEEEEeCCC
Q 030504 63 RFYCWDTAGQ-------------EKFGGLRDGYYIHGQCAIIMFDVTARLTYK-NVPTWHRDLCRVCENIPIVLCGNKVD 128 (176)
Q Consensus 63 ~~~~~D~~g~-------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~p~liv~nK~D 128 (176)
...+.|.||. +....+..++..+.+++|+|+--..-.... .+.++...+... +...|+|+||.|
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP~--GrRTIfVLTKVD 490 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPH--GRRTIFVLTKVD 490 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCCC--CCeeEEEEeecc
Confidence 4667899983 112335667888999999998655433222 222333333332 788999999999
Q ss_pred CCccc
Q 030504 129 VKNRQ 133 (176)
Q Consensus 129 l~~~~ 133 (176)
+...+
T Consensus 491 lAEkn 495 (980)
T KOG0447|consen 491 LAEKN 495 (980)
T ss_pred hhhhc
Confidence 98754
No 399
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.14 E-value=6.5e-05 Score=57.24 Aligned_cols=91 Identities=11% Similarity=0.157 Sum_probs=51.5
Q ss_pred EEEEEEEeCCCcccccccccc---ccc--cccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccC
Q 030504 61 KIRFYCWDTAGQEKFGGLRDG---YYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK 135 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~---~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~ 135 (176)
.+.+.++||+|.......... .+. .....++|++.+.. ...+...+..+.. ..+.-+|+||.|.....
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl~eii~~f~~---~~~~gvILTKlDEt~~l-- 500 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDLDEVVRRFAH---AKPQGVVLTKLDETGRF-- 500 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHHHHHHHHHHh---hCCeEEEEecCcCccch--
Confidence 467889999996432211000 010 12345667776642 2333333333322 34677889999985433
Q ss_pred HHHHHHHHHcCCeEEEeccCCCCCh
Q 030504 136 AKQVTFHRKKNLQYYEISAKSNYNF 160 (176)
Q Consensus 136 ~~~~~~~~~~~~~~~~~S~~~~~~v 160 (176)
..........++++..++ +|+.|
T Consensus 501 G~aLsv~~~~~LPI~yvt--~GQ~V 523 (559)
T PRK12727 501 GSALSVVVDHQMPITWVT--DGQRV 523 (559)
T ss_pred hHHHHHHHHhCCCEEEEe--CCCCc
Confidence 466677778888877774 45555
No 400
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.14 E-value=3.5e-05 Score=57.77 Aligned_cols=91 Identities=10% Similarity=0.030 Sum_probs=52.5
Q ss_pred EEEEEEeCCCcccccccc------ccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCC-EEEEEeCCCCCcccc
Q 030504 62 IRFYCWDTAGQEKFGGLR------DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV 134 (176)
Q Consensus 62 ~~~~~~D~~g~~~~~~~~------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~liv~nK~Dl~~~~~ 134 (176)
..+.++||+|........ ......+|.+++|+|++... ........+.. ..+ .-+|.||.|-..+.
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~---~l~i~gvIlTKlD~~a~~- 248 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHE---AVGIGGIIITKLDGTAKG- 248 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHh---cCCCCEEEEecccCCCcc-
Confidence 368999999965432110 11133578999999987642 22222223222 233 35678999975433
Q ss_pred CHHHHHHHHHcCCeEEEeccCCCCChHH
Q 030504 135 KAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
-.........+.|+..++. |+.+++
T Consensus 249 -G~~ls~~~~~~~Pi~fig~--Ge~v~D 273 (437)
T PRK00771 249 -GGALSAVAETGAPIKFIGT--GEKIDD 273 (437)
T ss_pred -cHHHHHHHHHCcCEEEEec--CCCccc
Confidence 3456666777777766643 444433
No 401
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.13 E-value=3.6e-05 Score=57.51 Aligned_cols=93 Identities=11% Similarity=0.075 Sum_probs=53.2
Q ss_pred EEEEEEEeCCCcccccc-cccc-----ccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc
Q 030504 61 KIRFYCWDTAGQEKFGG-LRDG-----YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~-~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~ 134 (176)
.+.+.++||+|...... .... .....+.+++|+|+... +.+......+.... + ..-+|.||.|-..+.-
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v-~-i~giIlTKlD~~~~~G 256 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL-G-LTGVVLTKLDGDARGG 256 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC-C-CCEEEEeCccCccccc
Confidence 35689999999543211 1111 12357889999998754 33334444444322 2 2356689999643322
Q ss_pred CHHHHHHHHHcCCeEEEeccCCCCChHH
Q 030504 135 KAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
.........++|+..++. |+.+++
T Consensus 257 --~~lsi~~~~~~PI~fi~~--Ge~i~d 280 (428)
T TIGR00959 257 --AALSVRSVTGKPIKFIGV--GEKIDD 280 (428)
T ss_pred --HHHHHHHHHCcCEEEEeC--CCChhh
Confidence 256667777787766644 444444
No 402
>PRK10867 signal recognition particle protein; Provisional
Probab=98.10 E-value=3.9e-05 Score=57.39 Aligned_cols=93 Identities=12% Similarity=0.080 Sum_probs=51.6
Q ss_pred EEEEEEEeCCCcccccc-cccc-----ccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc
Q 030504 61 KIRFYCWDTAGQEKFGG-LRDG-----YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~-~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~ 134 (176)
.+.+.++||+|...... .... ..-..+.+++|+|+... +.+......+.+.. + ..-+|.||.|-..+.-
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~-~-i~giIlTKlD~~~rgG 257 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL-G-LTGVILTKLDGDARGG 257 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC-C-CCEEEEeCccCccccc
Confidence 35689999999543211 1111 11256788999998654 33333333333321 2 2356679999643322
Q ss_pred CHHHHHHHHHcCCeEEEeccCCCCChHH
Q 030504 135 KAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
.........++|+..++. |+.+++
T Consensus 258 --~alsi~~~~~~PI~fig~--Ge~v~D 281 (433)
T PRK10867 258 --AALSIRAVTGKPIKFIGT--GEKLDD 281 (433)
T ss_pred --HHHHHHHHHCcCEEEEeC--CCcccc
Confidence 356666777787766644 444433
No 403
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=98.09 E-value=1.7e-05 Score=50.33 Aligned_cols=106 Identities=11% Similarity=0.117 Sum_probs=61.4
Q ss_pred EEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEEeCCC
Q 030504 18 IVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 97 (176)
Q Consensus 18 i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 97 (176)
.-|.+|+|||++...+... +......+.-++.+.. ...-.+.+.++|+|+.. .......+..+|.++++.+.+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~-~~~~~~~~~~vd~D~~---~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~- 77 (139)
T cd02038 5 TSGKGGVGKTNISANLALA-LAKLGKRVLLLDADLG---LANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE- 77 (139)
T ss_pred EcCCCCCcHHHHHHHHHHH-HHHCCCcEEEEECCCC---CCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-
Confidence 3457799999997764321 1111111111121111 01112678999999743 333456788999999999986
Q ss_pred hhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCC
Q 030504 98 RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (176)
Q Consensus 98 ~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~ 130 (176)
..++......++.+.+.....++.+|.|+.+..
T Consensus 78 ~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 78 PTSITDAYALIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred hhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence 344444444444444433456788999999754
No 404
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.08 E-value=2.3e-05 Score=57.61 Aligned_cols=92 Identities=9% Similarity=0.033 Sum_probs=51.8
Q ss_pred EEEEEEeCCCccccccc----ccccc--ccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccC
Q 030504 62 IRFYCWDTAGQEKFGGL----RDGYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK 135 (176)
Q Consensus 62 ~~~~~~D~~g~~~~~~~----~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~ 135 (176)
+.+.++||+|....... ....+ ...+.+++|+|++... +.+...+..+.. -..-=+|+||.|-... .
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~---~~idglI~TKLDET~k--~ 393 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD---IHIDGIVFTKFDETAS--S 393 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcC---CCCCEEEEEcccCCCC--c
Confidence 57889999996532211 11222 2346778888876432 222223333322 1233566899997653 3
Q ss_pred HHHHHHHHHcCCeEEEeccCCCCChHH
Q 030504 136 AKQVTFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 136 ~~~~~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
-...+++...++|+..++ +|++|.+
T Consensus 394 G~iLni~~~~~lPIsyit--~GQ~VPe 418 (436)
T PRK11889 394 GELLKIPAVSSAPIVLMT--DGQDVKK 418 (436)
T ss_pred cHHHHHHHHHCcCEEEEe--CCCCCCc
Confidence 355677777787776663 5565544
No 405
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.05 E-value=4.9e-05 Score=55.72 Aligned_cols=145 Identities=14% Similarity=0.054 Sum_probs=73.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCC-cccc--ce--------------------eEEEeEEEEE-------ecCcEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEP--TI--------------------GVEVHPLDFF-------TNCGKI 62 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~-~~~~--~~--------------------~~~~~~~~~~-------~~~~~~ 62 (176)
.-.++++|++|+||||++.++....... .... .. +......... ......
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 4578999999999999999865321100 0000 00 1111100000 011234
Q ss_pred EEEEEeCCCccccccccc---ccc---ccccEEEEEEeCCChh-hhhhHHHHHHHHhhhcC---CCCEEEEEeCCCCCcc
Q 030504 63 RFYCWDTAGQEKFGGLRD---GYY---IHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCE---NIPIVLCGNKVDVKNR 132 (176)
Q Consensus 63 ~~~~~D~~g~~~~~~~~~---~~~---~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~---~~p~liv~nK~Dl~~~ 132 (176)
.+.++||+|......... ..+ ....-.++|++++... ....+.+.+........ ..+-=+|.||.|-...
T Consensus 217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~ 296 (374)
T PRK14722 217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASN 296 (374)
T ss_pred CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCCC
Confidence 688999999664322111 111 2234568888888643 33333332322221100 0123566799997653
Q ss_pred ccCHHHHHHHHHcCCeEEEeccCCCCChH
Q 030504 133 QVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (176)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~S~~~~~~v~ 161 (176)
.-....+....++++..++ +|++|.
T Consensus 297 --~G~~l~~~~~~~lPi~yvt--~Gq~VP 321 (374)
T PRK14722 297 --LGGVLDTVIRYKLPVHYVS--TGQKVP 321 (374)
T ss_pred --ccHHHHHHHHHCcCeEEEe--cCCCCC
Confidence 2345566667777766653 344443
No 406
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.00 E-value=0.00019 Score=51.75 Aligned_cols=134 Identities=19% Similarity=0.110 Sum_probs=71.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCc----------------------cccceeEEEeEEEEEec-------------Cc
Q 030504 16 LVIVGDGGTGKTTFVKRHLTGEFEKK----------------------YEPTIGVEVHPLDFFTN-------------CG 60 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~-------------~~ 60 (176)
.++-|-=|||||||+++++....... .......+..+...++. ..
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~ 83 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRD 83 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhccC
Confidence 46778889999999999887443110 00011122222222211 11
Q ss_pred EEEEEEEeCCCcccccccccc-----c---cccccEEEEEEeCCChhhhhh-HHH-HHHHHhhhcCCCCEEEEEeCCCCC
Q 030504 61 KIRFYCWDTAGQEKFGGLRDG-----Y---YIHGQCAIIMFDVTARLTYKN-VPT-WHRDLCRVCENIPIVLCGNKVDVK 130 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~-----~---~~~~~~~i~v~d~~~~~s~~~-~~~-~~~~~~~~~~~~p~liv~nK~Dl~ 130 (176)
.+...++++.|...-...... . .-..|+++-|+|+.+-..... ... ...++ ..-=++++||+|+.
T Consensus 84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qi-----a~AD~ivlNK~Dlv 158 (323)
T COG0523 84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQL-----AFADVIVLNKTDLV 158 (323)
T ss_pred CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHH-----HhCcEEEEecccCC
Confidence 134556677774332111111 1 224588999999876543222 111 22222 22346778999999
Q ss_pred ccccCHHHHHHHHHcC--CeEEEecc
Q 030504 131 NRQVKAKQVTFHRKKN--LQYYEISA 154 (176)
Q Consensus 131 ~~~~~~~~~~~~~~~~--~~~~~~S~ 154 (176)
+...........++.+ ..++.+|.
T Consensus 159 ~~~~l~~l~~~l~~lnp~A~i~~~~~ 184 (323)
T COG0523 159 DAEELEALEARLRKLNPRARIIETSY 184 (323)
T ss_pred CHHHHHHHHHHHHHhCCCCeEEEccc
Confidence 8765445556666654 56777766
No 407
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.00 E-value=5.6e-05 Score=56.65 Aligned_cols=91 Identities=11% Similarity=0.077 Sum_probs=51.3
Q ss_pred EEEEEEEeCCCcccccc----ccccccc---cccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc
Q 030504 61 KIRFYCWDTAGQEKFGG----LRDGYYI---HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~----~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~ 133 (176)
.+.+.++||+|...... ....++. ...-.++|++++... ..+...+..+... + +--++.||.|-....
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--~~l~~~~~~f~~~--~-~~~vI~TKlDet~~~ 373 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--EDLKDIYKHFSRL--P-LDGLIFTKLDETSSL 373 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--HHHHHHHHHhCCC--C-CCEEEEecccccccc
Confidence 35788999999754321 1112222 234667778876432 2222222222211 2 235778999985432
Q ss_pred cCHHHHHHHHHcCCeEEEeccCCCCCh
Q 030504 134 VKAKQVTFHRKKNLQYYEISAKSNYNF 160 (176)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~S~~~~~~v 160 (176)
....++....++++..++ +|++|
T Consensus 374 --G~i~~~~~~~~lPv~yit--~Gq~V 396 (424)
T PRK05703 374 --GSILSLLIESGLPISYLT--NGQRV 396 (424)
T ss_pred --cHHHHHHHHHCCCEEEEe--CCCCC
Confidence 256788888888887774 55665
No 408
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.99 E-value=0.00015 Score=49.30 Aligned_cols=50 Identities=16% Similarity=0.103 Sum_probs=32.7
Q ss_pred cccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCC
Q 030504 79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (176)
Q Consensus 79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~ 130 (176)
-+...+++|.+|.|+|++.. ++..+....+...+. .-.++.+|+||.|-.
T Consensus 149 gRg~~~~vD~vivVvDpS~~-sl~taeri~~L~~el-g~k~i~~V~NKv~e~ 198 (255)
T COG3640 149 GRGTIEGVDLVIVVVDPSYK-SLRTAERIKELAEEL-GIKRIFVVLNKVDEE 198 (255)
T ss_pred ccccccCCCEEEEEeCCcHH-HHHHHHHHHHHHHHh-CCceEEEEEeeccch
Confidence 34446678999999998843 344443332222333 238999999999865
No 409
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.95 E-value=7.6e-06 Score=61.19 Aligned_cols=116 Identities=14% Similarity=0.194 Sum_probs=78.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcC------------CCCCc--cccceeEEEeEEEE----------------EecCcE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTG------------EFEKK--YEPTIGVEVHPLDF----------------FTNCGK 61 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~------------~~~~~--~~~~~~~~~~~~~~----------------~~~~~~ 61 (176)
+..++.++-+...|||||...+... +|... -....|++..+..+ ..+..+
T Consensus 18 NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~ 97 (842)
T KOG0469|consen 18 NIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNG 97 (842)
T ss_pred ccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcc
Confidence 4567889999999999999987541 11110 00112223222211 123346
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCC
Q 030504 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (176)
Q Consensus 62 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~ 130 (176)
+-+.++|.|||-.|.+..-+.++-.|+++.|+|.-+.--.+.-..+.+.+.++ -+|+ +++||.|..
T Consensus 98 FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ER--IkPv-lv~NK~DRA 163 (842)
T KOG0469|consen 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAER--IKPV-LVMNKMDRA 163 (842)
T ss_pred eeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhh--ccce-EEeehhhHH
Confidence 78899999999999999999999999999999998876555544455555554 4454 567999954
No 410
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.95 E-value=4e-05 Score=49.08 Aligned_cols=58 Identities=12% Similarity=0.117 Sum_probs=33.9
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCC
Q 030504 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 128 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~D 128 (176)
.+.+.++||+|... . ...++..+|-++++..+.-.+.+.-... ..+ ..--+++.||.|
T Consensus 91 ~~D~iiIDtaG~~~--~-~~~~~~~Ad~~ivv~tpe~~D~y~~~k~--~~~-----~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQ--S-EVDIASMADTTVVVMAPGAGDDIQAIKA--GIM-----EIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccCh--h-hhhHHHhCCEEEEEECCCchhHHHHhhh--hHh-----hhcCEEEEeCCC
Confidence 46788899988542 2 2347788898998888772222111110 111 223466779987
No 411
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.95 E-value=2.3e-05 Score=58.64 Aligned_cols=58 Identities=17% Similarity=0.139 Sum_probs=42.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 73 (176)
..+.|.+||-|+|||||+||.+.+++-. ..+.|.|-|..-.++.++. .+.++|+||.-
T Consensus 313 ~~vtVG~VGYPNVGKSSTINaLvG~KkV-sVS~TPGkTKHFQTi~ls~---~v~LCDCPGLV 370 (562)
T KOG1424|consen 313 DVVTVGFVGYPNVGKSSTINALVGRKKV-SVSSTPGKTKHFQTIFLSP---SVCLCDCPGLV 370 (562)
T ss_pred ceeEEEeecCCCCchhHHHHHHhcCcee-eeecCCCCcceeEEEEcCC---CceecCCCCcc
Confidence 4689999999999999999996655543 4466777665555554432 35788999954
No 412
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.93 E-value=0.0001 Score=53.19 Aligned_cols=84 Identities=12% Similarity=0.084 Sum_probs=43.3
Q ss_pred EEEEEEeCCCcccccccccccc--------ccccEEEEEEeCCChhhhh-hHHHHHHHHhhhcCCCCEEEEEeCCCCCcc
Q 030504 62 IRFYCWDTAGQEKFGGLRDGYY--------IHGQCAIIMFDVTARLTYK-NVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132 (176)
Q Consensus 62 ~~~~~~D~~g~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~ 132 (176)
....++++.|..........++ -..++++.|+|+.+..... .......++ ..-=++++||+|+...
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi-----~~AD~IvlnK~Dl~~~ 165 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQV-----GYADRILLTKTDVAGE 165 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHH-----HhCCEEEEeccccCCH
Confidence 4456778888654332222221 1358899999997543211 111111222 2233677899999864
Q ss_pred ccCHHHHHHHHHcC--CeEEEe
Q 030504 133 QVKAKQVTFHRKKN--LQYYEI 152 (176)
Q Consensus 133 ~~~~~~~~~~~~~~--~~~~~~ 152 (176)
. .......+..+ ++++.+
T Consensus 166 ~--~~~~~~l~~lnp~a~i~~~ 185 (318)
T PRK11537 166 A--EKLRERLARINARAPVYTV 185 (318)
T ss_pred H--HHHHHHHHHhCCCCEEEEe
Confidence 3 33444444433 455544
No 413
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.92 E-value=1.3e-05 Score=56.35 Aligned_cols=61 Identities=16% Similarity=0.263 Sum_probs=40.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCC----CccccceeEEEeEEE-EEecCcEEEEEEEeCCCc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFE----KKYEPTIGVEVHPLD-FFTNCGKIRFYCWDTAGQ 72 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~g~ 72 (176)
..++++.|+|.||+|||||+|........ ....+..|++..... +.+.+.. .+.+.||||.
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi 206 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI 206 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence 46899999999999999999986543221 122334455665554 4444333 3778999994
No 414
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.85 E-value=1.5e-05 Score=49.12 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.|+|.|++||||||+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998653
No 415
>PRK08118 topology modulation protein; Reviewed
Probab=97.84 E-value=1.5e-05 Score=52.09 Aligned_cols=21 Identities=33% Similarity=0.801 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
||+|+|++|||||||..++..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~ 23 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGE 23 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998653
No 416
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.82 E-value=3.2e-05 Score=63.84 Aligned_cols=110 Identities=20% Similarity=0.130 Sum_probs=61.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCc------cccceeEEEeEEEEEecCcEEEEEEEeCCCccc--------ccccccc
Q 030504 16 LVIVGDGGTGKTTFVKRHLTGEFEKK------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--------FGGLRDG 81 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~ 81 (176)
.+|+|++|+||||++.. .+-.|+-. .....| |..+-.. + +=.-.++||.|... ....|..
T Consensus 128 y~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~g-T~~cdww-f---~deaVlIDtaGry~~q~s~~~~~~~~W~~ 201 (1188)
T COG3523 128 YMVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPG-TRNCDWW-F---TDEAVLIDTAGRYITQDSADEVDRAEWLG 201 (1188)
T ss_pred eEEecCCCCCcchHHhc-ccccCcchhhhccccccCCC-CcccCcc-c---ccceEEEcCCcceecccCcchhhHHHHHH
Confidence 57899999999999886 54444311 011111 1222111 1 11345789988322 2233443
Q ss_pred c---------cccccEEEEEEeCCChhhhhh---------HHHHHHHHhhhc-CCCCEEEEEeCCCCCc
Q 030504 82 Y---------YIHGQCAIIMFDVTARLTYKN---------VPTWHRDLCRVC-ENIPIVLCGNKVDVKN 131 (176)
Q Consensus 82 ~---------~~~~~~~i~v~d~~~~~s~~~---------~~~~~~~~~~~~-~~~p~liv~nK~Dl~~ 131 (176)
+ .+..+++|+.+|+.+--+-.. +..-+..+.+.. -..|+++++||.|+..
T Consensus 202 fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 202 FLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 3 235799999999885322111 111122222222 3899999999999875
No 417
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.80 E-value=1.8e-05 Score=52.19 Aligned_cols=23 Identities=30% Similarity=0.637 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~ 36 (176)
.||+|+|+|||||||+..++...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999986644
No 418
>PRK07261 topology modulation protein; Provisional
Probab=97.79 E-value=2.1e-05 Score=51.62 Aligned_cols=20 Identities=35% Similarity=0.713 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
||+|+|++|+|||||...+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~ 21 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLS 21 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 79999999999999999854
No 419
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.78 E-value=0.0003 Score=49.50 Aligned_cols=93 Identities=9% Similarity=0.048 Sum_probs=53.2
Q ss_pred EEEEEEEeCCCcccccc-c---ccccc--ccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc
Q 030504 61 KIRFYCWDTAGQEKFGG-L---RDGYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~-~---~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~ 134 (176)
.+.+.++||+|...... . ...++ ...+-.++|+|++... +.+..++..+.. -.+--++.||.|-...
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~~---~~~~~~I~TKlDet~~-- 226 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD---IHIDGIVFTKFDETAS-- 226 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhCC---CCCCEEEEEeecCCCC--
Confidence 46788999999653221 1 11111 2346788899987432 223333333322 2233566899998663
Q ss_pred CHHHHHHHHHcCCeEEEeccCCCCChHH
Q 030504 135 KAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
.-...+++...+.|+..++ +|+++.+
T Consensus 227 ~G~~l~~~~~~~~Pi~~it--~Gq~vp~ 252 (270)
T PRK06731 227 SGELLKIPAVSSAPIVLMT--DGQDVKK 252 (270)
T ss_pred ccHHHHHHHHHCcCEEEEe--CCCCCCc
Confidence 3355677777787777663 5566543
No 420
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.77 E-value=0.00033 Score=51.51 Aligned_cols=140 Identities=14% Similarity=0.163 Sum_probs=71.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCcccccee-EEEeEEEE-----------------Ee------------cCcEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG-VEVHPLDF-----------------FT------------NCGKI 62 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~-~~~~~~~~-----------------~~------------~~~~~ 62 (176)
.-.|+++|+.||||||-+..+.....-.......| ++.+++.+ .+ .-..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 56799999999999998777433221011111111 11121111 00 01234
Q ss_pred EEEEEeCCCccccccc----cccccc--cccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCE-EEEEeCCCCCccccC
Q 030504 63 RFYCWDTAGQEKFGGL----RDGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDVKNRQVK 135 (176)
Q Consensus 63 ~~~~~D~~g~~~~~~~----~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~-liv~nK~Dl~~~~~~ 135 (176)
.+.++||.|...+... ...++. ...-+.+|++++... +.+...+..+. ..|+ -++.||.|-... .
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dlkei~~~f~----~~~i~~~I~TKlDET~s--~ 354 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDLKEIIKQFS----LFPIDGLIFTKLDETTS--L 354 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHHHHHHHHhc----cCCcceeEEEcccccCc--h
Confidence 6889999997654322 222222 234455667766443 23333333332 3332 455799986542 2
Q ss_pred HHHHHHHHHcCCeEEEeccCCCCChHH
Q 030504 136 AKQVTFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 136 ~~~~~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
-....+..+.+.++-.+ .+|++|.+
T Consensus 355 G~~~s~~~e~~~PV~Yv--T~GQ~VPe 379 (407)
T COG1419 355 GNLFSLMYETRLPVSYV--TNGQRVPE 379 (407)
T ss_pred hHHHHHHHHhCCCeEEE--eCCCCCCc
Confidence 34556666666666555 35565543
No 421
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.76 E-value=6.5e-05 Score=56.87 Aligned_cols=90 Identities=8% Similarity=-0.059 Sum_probs=47.9
Q ss_pred EEEEEEeCCCcccccc---cccccccc---ccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccC
Q 030504 62 IRFYCWDTAGQEKFGG---LRDGYYIH---GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK 135 (176)
Q Consensus 62 ~~~~~~D~~g~~~~~~---~~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~ 135 (176)
..+.++||+|...... .....+.. ..-.++|+|.+... ..+.+....+.. ...--+|+||.|-.. ..
T Consensus 335 ~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~l~~i~~~f~~---~~~~g~IlTKlDet~--~~ 407 (484)
T PRK06995 335 KHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DTLNEVVQAYRG---PGLAGCILTKLDEAA--SL 407 (484)
T ss_pred CCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HHHHHHHHHhcc---CCCCEEEEeCCCCcc--cc
Confidence 3578899999443221 00111111 22367888887443 222222222221 223456689998754 23
Q ss_pred HHHHHHHHHcCCeEEEeccCCCCCh
Q 030504 136 AKQVTFHRKKNLQYYEISAKSNYNF 160 (176)
Q Consensus 136 ~~~~~~~~~~~~~~~~~S~~~~~~v 160 (176)
-.........++++.++ -+|++|
T Consensus 408 G~~l~i~~~~~lPI~yv--t~GQ~V 430 (484)
T PRK06995 408 GGALDVVIRYKLPLHYV--SNGQRV 430 (484)
T ss_pred hHHHHHHHHHCCCeEEE--ecCCCC
Confidence 35567777778887776 456666
No 422
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.76 E-value=0.00027 Score=56.28 Aligned_cols=92 Identities=10% Similarity=-0.015 Sum_probs=50.8
Q ss_pred EEEEEEeCCCcccccc-cc---ccc--cccccEEEEEEeCCCh-hhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc
Q 030504 62 IRFYCWDTAGQEKFGG-LR---DGY--YIHGQCAIIMFDVTAR-LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (176)
Q Consensus 62 ~~~~~~D~~g~~~~~~-~~---~~~--~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~ 134 (176)
+.+.++||+|...... .. ... ....+-.++|+|++.. ..+.++.+ .+.....-.+-=+|+||.|-...
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~---~f~~~~~~~i~glIlTKLDEt~~-- 338 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVH---AYRHGAGEDVDGCIITKLDEATH-- 338 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHH---HHhhcccCCCCEEEEeccCCCCC--
Confidence 4688999999443211 11 110 1234667889998753 33333332 22221111234566899997653
Q ss_pred CHHHHHHHHHcCCeEEEeccCCCCCh
Q 030504 135 KAKQVTFHRKKNLQYYEISAKSNYNF 160 (176)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~S~~~~~~v 160 (176)
.-...++....++++..++ +|++|
T Consensus 339 ~G~iL~i~~~~~lPI~yit--~GQ~V 362 (767)
T PRK14723 339 LGPALDTVIRHRLPVHYVS--TGQKV 362 (767)
T ss_pred ccHHHHHHHHHCCCeEEEe--cCCCC
Confidence 3345677777788777763 56666
No 423
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.73 E-value=2.7e-05 Score=49.39 Aligned_cols=19 Identities=37% Similarity=0.733 Sum_probs=17.6
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 030504 16 LVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~ 34 (176)
|+++|++||||||++.++.
T Consensus 2 ii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999965
No 424
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.73 E-value=6e-05 Score=51.05 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=23.0
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
+.+....-|+|+|++|||||||++++..
T Consensus 8 ~~~~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 8 NKPAKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCCCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 4455667789999999999999999754
No 425
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.71 E-value=3.2e-05 Score=50.68 Aligned_cols=24 Identities=38% Similarity=0.659 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGE 37 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~ 37 (176)
.=+++.|++|+|||||+++++...
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 347899999999999999977554
No 426
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.71 E-value=0.00021 Score=43.05 Aligned_cols=102 Identities=13% Similarity=0.064 Sum_probs=55.8
Q ss_pred EEEEcC-CCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 030504 16 LVIVGD-GGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (176)
Q Consensus 16 i~i~G~-~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 94 (176)
|+++|. .|+||||+...+...-.......+.-.+.+.. ....+.++|+|+... ......+..+|.++++.+
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~------~~~D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~ 73 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ------FGDDYVVVDLGRSLD--EVSLAALDQADRVFLVTQ 73 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC------CCCCEEEEeCCCCcC--HHHHHHHHHcCeEEEEec
Confidence 455554 47999998776432111110111211111111 111688999998543 233446678899999988
Q ss_pred CCChhhhhhHHHHHHHHhhhc-C-CCCEEEEEeC
Q 030504 95 VTARLTYKNVPTWHRDLCRVC-E-NIPIVLCGNK 126 (176)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~-~-~~p~liv~nK 126 (176)
.+ ..+...+..+++.+.+.. + ..++.+|+|+
T Consensus 74 ~~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 74 QD-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CC-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 65 444555555555554432 2 3456677775
No 427
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.70 E-value=4.9e-05 Score=50.77 Aligned_cols=24 Identities=21% Similarity=0.541 Sum_probs=20.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
..+-.+++|+.||||||+.+.+..
T Consensus 2 m~ya~lV~GpAgSGKSTyC~~~~~ 25 (273)
T KOG1534|consen 2 MRYAQLVMGPAGSGKSTYCSSMYE 25 (273)
T ss_pred CceeEEEEccCCCCcchHHHHHHH
Confidence 457889999999999999988653
No 428
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.69 E-value=4.2e-05 Score=55.59 Aligned_cols=58 Identities=16% Similarity=0.158 Sum_probs=43.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 72 (176)
++.+++.|+|-|++||||+||++...+. ....++.|+|..-..+..+. .+.+.|.||.
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~-C~vg~~pGvT~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKA-CNVGNVPGVTRSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhcc-ccCCCCccchhhhhheeccC---CceeccCCce
Confidence 5789999999999999999999776554 34455666666655554442 4678899994
No 429
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.68 E-value=2.7e-05 Score=50.70 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=16.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~ 36 (176)
||+|+|.+++|||||++.+...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999997643
No 430
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.66 E-value=5.4e-05 Score=40.60 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
..+|.|+.|+|||||+.++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999998854
No 431
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.64 E-value=0.00033 Score=41.89 Aligned_cols=82 Identities=13% Similarity=0.186 Sum_probs=48.3
Q ss_pred EEEEcC-CCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 030504 16 LVIVGD-GGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (176)
Q Consensus 16 i~i~G~-~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 94 (176)
|++.|. .|+||||+...+... +.....++.-.+ .+ ..+.+.++|+|+... ......+..+|.++++.+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~-~~~~~~~vl~~d-------~d-~~~d~viiD~p~~~~--~~~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAA-LARRGKRVLLID-------LD-PQYDYIIIDTPPSLG--LLTRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHH-HHhCCCcEEEEe-------CC-CCCCEEEEeCcCCCC--HHHHHHHHHCCEEEEecc
Confidence 567774 489999998764322 111111222111 11 126788999998643 223366778999999998
Q ss_pred CCChhhhhhHHHHHH
Q 030504 95 VTARLTYKNVPTWHR 109 (176)
Q Consensus 95 ~~~~~s~~~~~~~~~ 109 (176)
.+ ..++..+..+++
T Consensus 71 ~~-~~s~~~~~~~~~ 84 (104)
T cd02042 71 PS-PLDLDGLEKLLE 84 (104)
T ss_pred CC-HHHHHHHHHHHH
Confidence 75 445555554444
No 432
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.64 E-value=0.0062 Score=39.65 Aligned_cols=141 Identities=6% Similarity=-0.019 Sum_probs=92.7
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccccccccccc
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 87 (176)
-+....-.|+++|..+.++..|...++.... . +....... .-.-.|. + ....=...|
T Consensus 10 lp~ln~atiLLVg~e~~~~~~LA~a~l~~~~--~------~~l~Vh~a---------~sLPLp~--e----~~~lRprID 66 (176)
T PF11111_consen 10 LPELNTATILLVGTEEALLQQLAEAMLEEDK--E------FKLKVHLA---------KSLPLPS--E----NNNLRPRID 66 (176)
T ss_pred CCCcceeEEEEecccHHHHHHHHHHHHhhcc--c------eeEEEEEe---------ccCCCcc--c----ccCCCceeE
Confidence 3455678899999999999999999774111 0 01111110 0011111 1 111124679
Q ss_pred EEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc--cccCHHHHHHHHHcCCeEEEeccCCCCChHHHHH
Q 030504 88 CAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN--RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (176)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 165 (176)
.++|++|.....+++.++.-+..+...+.--.+.++++-..... .....+..+++..+.++++.+.-...++...+-+
T Consensus 67 lIVFvinl~sk~SL~~ve~SL~~vd~~fflGKVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lAq 146 (176)
T PF11111_consen 67 LIVFVINLHSKYSLQSVEASLSHVDPSFFLGKVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLAQ 146 (176)
T ss_pred EEEEEEecCCcccHHHHHHHHhhCChhhhccceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHHH
Confidence 99999999999999999887777765543445666666665544 3334567799999999999999888887766666
Q ss_pred HHHHHH
Q 030504 166 YLARKL 171 (176)
Q Consensus 166 ~l~~~i 171 (176)
.|.+.+
T Consensus 147 RLL~~l 152 (176)
T PF11111_consen 147 RLLRML 152 (176)
T ss_pred HHHHHH
Confidence 665544
No 433
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.64 E-value=4.4e-05 Score=51.27 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.++|+|++|||||||++++..
T Consensus 30 vv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 589999999999999998443
No 434
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.63 E-value=0.00035 Score=45.95 Aligned_cols=59 Identities=19% Similarity=0.271 Sum_probs=34.7
Q ss_pred cEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcC
Q 030504 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN 146 (176)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~ 146 (176)
|++++|+|+.++.+... ..+.+.+.-...+.|+++|+||+|+.+.....+..+.+++..
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~ 59 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREF 59 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhC
Confidence 78999999988643221 122222111113789999999999976444333444444433
No 435
>PLN02200 adenylate kinase family protein
Probab=97.62 E-value=9.3e-05 Score=51.10 Aligned_cols=26 Identities=23% Similarity=0.449 Sum_probs=21.5
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
...++.|+|+|+|||||||+..++..
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999988653
No 436
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.62 E-value=6.2e-05 Score=41.61 Aligned_cols=19 Identities=37% Similarity=0.683 Sum_probs=17.2
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 030504 16 LVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~ 34 (176)
|++.|.+|+||||+.+.+.
T Consensus 2 i~i~G~~gsGKst~~~~l~ 20 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLA 20 (69)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7889999999999999855
No 437
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.62 E-value=0.00054 Score=45.26 Aligned_cols=86 Identities=9% Similarity=0.079 Sum_probs=59.1
Q ss_pred cEEEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHH
Q 030504 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV 139 (176)
Q Consensus 60 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~ 139 (176)
..+.+.++|+|+... ......+..+|.+++++.++.. +...+..+++.+.+. +.|+.+|+||.|.... ...+..
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~-~~~~~~~~~~~l~~~--~~~~~vV~N~~~~~~~-~~~~~~ 164 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPS-GLHDLERAVELVRHF--GIPVGVVINKYDLNDE-IAEEIE 164 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcc-cHHHHHHHHHHHHHc--CCCEEEEEeCCCCCcc-hHHHHH
Confidence 456889999996542 2334456789999999998743 455555555555544 6788999999997643 334556
Q ss_pred HHHHHcCCeEEE
Q 030504 140 TFHRKKNLQYYE 151 (176)
Q Consensus 140 ~~~~~~~~~~~~ 151 (176)
++++..+++++.
T Consensus 165 ~~~~~~~~~vl~ 176 (179)
T cd03110 165 DYCEEEGIPILG 176 (179)
T ss_pred HHHHHcCCCeEE
Confidence 777777887664
No 438
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.61 E-value=5.6e-05 Score=50.32 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~ 36 (176)
.=|+|+|++|||||||+++++..
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 44899999999999999997653
No 439
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.60 E-value=0.0012 Score=43.49 Aligned_cols=84 Identities=6% Similarity=-0.100 Sum_probs=50.1
Q ss_pred EEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHH
Q 030504 63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFH 142 (176)
Q Consensus 63 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~ 142 (176)
.+.++|+|+.... .....+..+|.++++.+++.. ++..+..+++.+... ......+|.|+.|............+.
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~~~~~-~~~~~~iv~N~~~~~~~~~~~~~~~~~ 139 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEIS-SLRDADRVKGLLEAL-GIKVVGVIVNRVRPDMVEGGDMVEDIE 139 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcc-hHHHHHHHHHHHHHc-CCceEEEEEeCCcccccchhhHHHHHH
Confidence 6889999975432 234456788999999987643 344444444444442 223467889999876543322223444
Q ss_pred HHcCCeEE
Q 030504 143 RKKNLQYY 150 (176)
Q Consensus 143 ~~~~~~~~ 150 (176)
+..+.+++
T Consensus 140 ~~~~~~v~ 147 (179)
T cd02036 140 EILGVPLL 147 (179)
T ss_pred HHhCCCEE
Confidence 44566554
No 440
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.57 E-value=0.00068 Score=39.65 Aligned_cols=69 Identities=20% Similarity=0.198 Sum_probs=42.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccc-cccccccccEEEEEEe
Q 030504 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL-RDGYYIHGQCAIIMFD 94 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-~~~~~~~~~~~i~v~d 94 (176)
+++.|.+|+||||+...+...-.... ....-. + .+.++|+++....... .......+|.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g-~~v~~~---------~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRG-KRVLLI---------D----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-CeEEEE---------C----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 67889999999999887543221111 111111 1 6788999875432221 1445567899999988
Q ss_pred CCCh
Q 030504 95 VTAR 98 (176)
Q Consensus 95 ~~~~ 98 (176)
.+..
T Consensus 68 ~~~~ 71 (99)
T cd01983 68 PEAL 71 (99)
T ss_pred Cchh
Confidence 7754
No 441
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.54 E-value=0.00045 Score=43.54 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~ 36 (176)
.-.+++.|++|+|||++++.+...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999986643
No 442
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.54 E-value=7.1e-05 Score=50.96 Aligned_cols=22 Identities=41% Similarity=0.638 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q 030504 16 LVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
++|+|++|||||||+|- +.+-.
T Consensus 34 vaI~GpSGSGKSTLLni-ig~ld 55 (226)
T COG1136 34 VAIVGPSGSGKSTLLNL-LGGLD 55 (226)
T ss_pred EEEECCCCCCHHHHHHH-Hhccc
Confidence 89999999999999995 54443
No 443
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.54 E-value=0.00054 Score=50.37 Aligned_cols=92 Identities=17% Similarity=0.160 Sum_probs=49.2
Q ss_pred EEEEEEEeCCCccccccc----ccccc--ccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCC-CEEEEEeCCCCCccc
Q 030504 61 KIRFYCWDTAGQEKFGGL----RDGYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI-PIVLCGNKVDVKNRQ 133 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~----~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-p~liv~nK~Dl~~~~ 133 (176)
.+.+.++||+|....... ...+. ...+..++|.+++... ..+...+.. +... +--+|.||.|-...
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~--~d~~~i~~~----f~~l~i~glI~TKLDET~~- 357 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKS--ADVMTILPK----LAEIPIDGFIITKMDETTR- 357 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccH--HHHHHHHHh----cCcCCCCEEEEEcccCCCC-
Confidence 357899999997432221 11111 1345666777653221 222222222 2222 34566899998643
Q ss_pred cCHHHHHHHHHcCCeEEEeccCCCCChHH
Q 030504 134 VKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
.-...+.....+.|+..+| +|++|.+
T Consensus 358 -~G~~Lsv~~~tglPIsylt--~GQ~Vpd 383 (407)
T PRK12726 358 -IGDLYTVMQETNLPVLYMT--DGQNITE 383 (407)
T ss_pred -ccHHHHHHHHHCCCEEEEe--cCCCCCc
Confidence 3355677777787776664 4455543
No 444
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.53 E-value=0.00011 Score=49.87 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=22.2
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
..+...|+|.|++|||||||++.+..
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999999998653
No 445
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.53 E-value=0.00075 Score=49.28 Aligned_cols=20 Identities=35% Similarity=0.585 Sum_probs=17.8
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 030504 16 LVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~ 35 (176)
.++.|--|+|||||+++++.
T Consensus 7 ~iltGFLGaGKTTll~~ll~ 26 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQ 26 (341)
T ss_pred EEEEECCCCCHHHHHHHHHh
Confidence 57789999999999999875
No 446
>PRK06217 hypothetical protein; Validated
Probab=97.53 E-value=8.3e-05 Score=49.40 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.+|+|+|.+|||||||..++..
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~ 23 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAE 23 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998654
No 447
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.53 E-value=0.00011 Score=49.72 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=21.4
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHh
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
+++..-|+|+|++|||||||++.+.
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~ 27 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIY 27 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHH
Confidence 4566779999999999999999865
No 448
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=97.52 E-value=0.00016 Score=49.24 Aligned_cols=101 Identities=15% Similarity=0.140 Sum_probs=60.6
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEeCCChh--hhhhHHHHHHHHhhh-cCCCCEEEEEeCCCCCccccCHH
Q 030504 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL--TYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQVKAK 137 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~-~~~~p~liv~nK~Dl~~~~~~~~ 137 (176)
.+.|.+.|+.|... ......+..+|.+++=.-.+..+ .-.....|+..+.+. ....|.-++.|+.+-........
T Consensus 83 ~~d~VlvDleG~as--~~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~~~~~~~ 160 (231)
T PF07015_consen 83 GFDFVLVDLEGGAS--ELNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAARLTRAQR 160 (231)
T ss_pred CCCEEEEeCCCCCc--hhHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcchhhHHHH
Confidence 46789999988552 33445566889999855555322 222223444444432 46899999999987432222112
Q ss_pred -HHHHHHHcCCeEEEeccCCCCChHHHHH
Q 030504 138 -QVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (176)
Q Consensus 138 -~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 165 (176)
..++.. ++++|.+.....+.+.++|.
T Consensus 161 ~~~e~~~--~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 161 IISEQLE--SLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred HHHHHHh--cCCccccccccHHHHHHHHH
Confidence 223332 48888888877666666655
No 449
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.51 E-value=0.0011 Score=49.46 Aligned_cols=139 Identities=15% Similarity=0.145 Sum_probs=70.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCC-CCCc---------------------cccceeEEEeEEE-E-----EecCcEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGE-FEKK---------------------YEPTIGVEVHPLD-F-----FTNCGKIRF 64 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~-~~~~---------------------~~~~~~~~~~~~~-~-----~~~~~~~~~ 64 (176)
..-++++|++||||||++.++.... .... +....+....... . ......+.+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 4568999999999999999876421 0000 0001111111000 0 001134567
Q ss_pred EEEeCCCccccc-cc---cccccc-----cccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccC
Q 030504 65 YCWDTAGQEKFG-GL---RDGYYI-----HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK 135 (176)
Q Consensus 65 ~~~D~~g~~~~~-~~---~~~~~~-----~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~ 135 (176)
.++||+|..... .. +..++. ...-.++|+|++... +.+......... -.+-=+|.||.|-....
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~---~~~~glIlTKLDEt~~~-- 375 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYES---LNYRRILLTKLDEADFL-- 375 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcC---CCCCEEEEEcccCCCCc--
Confidence 899999965321 11 111111 234678899988654 122222222211 12235567999975332
Q ss_pred HHHHHHHHHcCCeEEEeccCCCCCh
Q 030504 136 AKQVTFHRKKNLQYYEISAKSNYNF 160 (176)
Q Consensus 136 ~~~~~~~~~~~~~~~~~S~~~~~~v 160 (176)
-....+....+.|+..++ .|++|
T Consensus 376 G~il~i~~~~~lPI~ylt--~GQ~V 398 (432)
T PRK12724 376 GSFLELADTYSKSFTYLS--VGQEV 398 (432)
T ss_pred cHHHHHHHHHCCCEEEEe--cCCCC
Confidence 235666667777766663 34444
No 450
>PRK14530 adenylate kinase; Provisional
Probab=97.49 E-value=0.00011 Score=50.18 Aligned_cols=21 Identities=24% Similarity=0.397 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
-+|+|+|++||||||+.+.+.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La 24 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLA 24 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999864
No 451
>PRK03839 putative kinase; Provisional
Probab=97.49 E-value=9.8e-05 Score=48.89 Aligned_cols=21 Identities=38% Similarity=0.447 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
+|+++|.+||||||+..++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998653
No 452
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.49 E-value=9.6e-05 Score=50.69 Aligned_cols=19 Identities=32% Similarity=0.611 Sum_probs=17.1
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 030504 16 LVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~ 34 (176)
++++|++|||||||++-+.
T Consensus 32 vsilGpSGcGKSTLLriiA 50 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIA 50 (248)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 8899999999999999643
No 453
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.47 E-value=0.00012 Score=46.09 Aligned_cols=23 Identities=43% Similarity=0.756 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++|+|++|+|||||++. +.|..
T Consensus 13 ~~~i~G~nGsGKStLl~~-l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKA-LAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHH-HTTSS
T ss_pred EEEEEccCCCccccceee-ecccc
Confidence 589999999999999997 54544
No 454
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.45 E-value=0.00012 Score=45.45 Aligned_cols=20 Identities=40% Similarity=0.469 Sum_probs=17.8
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 030504 16 LVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~ 35 (176)
|+|.|.+||||||+++.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~ 20 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAE 20 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998653
No 455
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.45 E-value=0.00012 Score=45.65 Aligned_cols=19 Identities=37% Similarity=0.609 Sum_probs=17.4
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 030504 16 LVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~ 34 (176)
|++.|++|+|||++++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la 19 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALA 19 (132)
T ss_dssp EEEESSTTSSHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHH
Confidence 6899999999999999865
No 456
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.45 E-value=0.00012 Score=46.25 Aligned_cols=20 Identities=45% Similarity=0.807 Sum_probs=17.8
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 030504 16 LVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~ 35 (176)
|+|+|++|+|||||++.+..
T Consensus 2 i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999998654
No 457
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.45 E-value=0.00013 Score=50.22 Aligned_cols=25 Identities=44% Similarity=0.791 Sum_probs=22.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
+.++|++|+|.+|||||+|+..++.
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~ 35 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLY 35 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999988764
No 458
>PRK01889 GTPase RsgA; Reviewed
Probab=97.44 E-value=0.00016 Score=53.03 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
-+++++|.+|+|||||+|.+..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g 217 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLG 217 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHH
Confidence 4799999999999999998664
No 459
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.44 E-value=0.0016 Score=46.78 Aligned_cols=144 Identities=15% Similarity=0.124 Sum_probs=75.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccc---------------------cceeEEEeEEEE-------------E
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYE---------------------PTIGVEVHPLDF-------------F 56 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~-------------~ 56 (176)
..++-|+++|-.|+||||-+-.+.......... .-.|...-.... .
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 457889999999999999887754311000000 001111111110 0
Q ss_pred ecCcEEEEEEEeCCCccccc-cc-----------cccccccccEEEEEEeCCChh-hhhhHHHHHHHHhhhcCCCCEEEE
Q 030504 57 TNCGKIRFYCWDTAGQEKFG-GL-----------RDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLC 123 (176)
Q Consensus 57 ~~~~~~~~~~~D~~g~~~~~-~~-----------~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~liv 123 (176)
...+++.+.+.||+|.-... .+ .+..-...+-++++.|++.+. +++.+.. +.+.. +.. -++
T Consensus 217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~----F~eav-~l~-GiI 290 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKI----FNEAV-GLD-GII 290 (340)
T ss_pred HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHH----HHHhc-CCc-eEE
Confidence 11234678999999943211 11 111112235588888998764 3333332 22221 222 456
Q ss_pred EeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChHHHH
Q 030504 124 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 124 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~ 164 (176)
+||.|-..+ --.....+...++|+..+- -|++++++.
T Consensus 291 lTKlDgtAK--GG~il~I~~~l~~PI~fiG--vGE~~~DL~ 327 (340)
T COG0552 291 LTKLDGTAK--GGIILSIAYELGIPIKFIG--VGEGYDDLR 327 (340)
T ss_pred EEecccCCC--cceeeeHHHHhCCCEEEEe--CCCChhhcc
Confidence 799994322 2233566777888877763 456666553
No 460
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.44 E-value=0.00014 Score=45.54 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGE 37 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~ 37 (176)
-.++++|++|+||||++..+...-
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc
Confidence 478999999999999999865433
No 461
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.43 E-value=0.00014 Score=48.48 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.++|+|++|+|||||++.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~ 24 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQ 24 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999998643
No 462
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.43 E-value=0.00022 Score=51.95 Aligned_cols=77 Identities=16% Similarity=0.124 Sum_probs=55.3
Q ss_pred cccccccccEEEEEEeCCChhhhh--hHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCC
Q 030504 79 RDGYYIHGQCAIIMFDVTARLTYK--NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKS 156 (176)
Q Consensus 79 ~~~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~ 156 (176)
.+..+..+|++|.|.|+.||.+-. .++.++ ...-.++..++|+||.|+.++...++...+++..+..+.+.++..
T Consensus 140 ~rkvve~sDVVleVlDARDPlgtR~~~vE~~V---~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~ptv~fkast~ 216 (435)
T KOG2484|consen 140 FRKVVEASDVVLEVLDARDPLGTRCPEVEEAV---LQAHGNKKLILVLNKIDLVPREVVEKWLVYLRREGPTVAFKASTQ 216 (435)
T ss_pred HHHHHhhhheEEEeeeccCCCCCCChhHHHHH---HhccCCceEEEEeehhccCCHHHHHHHHHHHHhhCCcceeecccc
Confidence 333456789999999999987543 333332 222236899999999999999988888888888887666655544
Q ss_pred CC
Q 030504 157 NY 158 (176)
Q Consensus 157 ~~ 158 (176)
+.
T Consensus 217 ~~ 218 (435)
T KOG2484|consen 217 MQ 218 (435)
T ss_pred cc
Confidence 43
No 463
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.42 E-value=0.00013 Score=48.30 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.++|+|++|||||||++.+..
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~ 23 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARA 23 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998543
No 464
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.42 E-value=0.00015 Score=45.97 Aligned_cols=21 Identities=29% Similarity=0.612 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.|+|+|+.++|||||+..++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~ 22 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLIN 22 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998663
No 465
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.42 E-value=0.00048 Score=51.87 Aligned_cols=79 Identities=15% Similarity=0.151 Sum_probs=58.2
Q ss_pred cccccc---cccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEec
Q 030504 77 GLRDGY---YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEIS 153 (176)
Q Consensus 77 ~~~~~~---~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S 153 (176)
.+|+++ +..+|+++.++|+.+|--|... ++...+.+.-+++..++++||.||..........+++...+++++..|
T Consensus 163 E~WRQLWRVlErSDivvqIVDARnPllfr~~-dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~~vf~S 241 (562)
T KOG1424|consen 163 EIWRQLWRVLERSDIVVQIVDARNPLLFRSP-DLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNNIPVVFFS 241 (562)
T ss_pred HHHHHHHHHHhhcceEEEEeecCCccccCCh-hHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcCceEEEEe
Confidence 345554 4578999999999998644322 222333333346788999999999887777777788888999999999
Q ss_pred cCC
Q 030504 154 AKS 156 (176)
Q Consensus 154 ~~~ 156 (176)
|..
T Consensus 242 A~~ 244 (562)
T KOG1424|consen 242 ALA 244 (562)
T ss_pred ccc
Confidence 886
No 466
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.41 E-value=0.00049 Score=43.11 Aligned_cols=23 Identities=43% Similarity=0.642 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~ 36 (176)
--|++.|+.|+|||||++.+..+
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 35899999999999999997764
No 467
>PRK13949 shikimate kinase; Provisional
Probab=97.40 E-value=0.00015 Score=47.48 Aligned_cols=20 Identities=40% Similarity=0.539 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
+|+|+|++|+||||+...+.
T Consensus 3 ~I~liG~~GsGKstl~~~La 22 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALA 22 (169)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999999754
No 468
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.40 E-value=0.00016 Score=43.42 Aligned_cols=21 Identities=33% Similarity=0.601 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 458999999999999999855
No 469
>PRK08233 hypothetical protein; Provisional
Probab=97.39 E-value=0.0002 Score=47.40 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
..-|+|.|.+|||||||.+++..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 46788999999999999998653
No 470
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.37 E-value=0.00044 Score=50.11 Aligned_cols=92 Identities=22% Similarity=0.185 Sum_probs=63.8
Q ss_pred eCCCcc-ccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHc-
Q 030504 68 DTAGQE-KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK- 145 (176)
Q Consensus 68 D~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~- 145 (176)
+.+|+. .+.......+..+|+++-|+|+.++.+...- .+.+...+.|.++|+||+|+.+.....+........
T Consensus 16 ~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~-----~l~~~v~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~ 90 (322)
T COG1161 16 WFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNP-----ELERIVKEKPKLLVLNKADLAPKEVTKKWKKYFKKEE 90 (322)
T ss_pred CCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCc-----cHHHHHccCCcEEEEehhhcCCHHHHHHHHHHHHhcC
Confidence 336654 3445566677889999999999998644322 223333466779999999999877766655555554
Q ss_pred CCeEEEeccCCCCChHHHH
Q 030504 146 NLQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 146 ~~~~~~~S~~~~~~v~~~~ 164 (176)
+...+.+++..+.+...+.
T Consensus 91 ~~~~~~v~~~~~~~~~~i~ 109 (322)
T COG1161 91 GIKPIFVSAKSRQGGKKIR 109 (322)
T ss_pred CCccEEEEeecccCccchH
Confidence 6777888888887766555
No 471
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.37 E-value=0.00026 Score=47.04 Aligned_cols=23 Identities=35% Similarity=0.635 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
-++++|++|||||||+|- ..|-.
T Consensus 33 ~vv~lGpSGcGKTTLLnl-~AGf~ 55 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNL-IAGFV 55 (259)
T ss_pred EEEEEcCCCccHHHHHHH-HhcCc
Confidence 378999999999999995 54443
No 472
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.37 E-value=0.00019 Score=49.41 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.+||+|+|+|||||||+...+..
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999998654
No 473
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.36 E-value=0.00019 Score=47.32 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=19.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~ 34 (176)
.-.++++|++|+|||||++.++
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3468999999999999999764
No 474
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.36 E-value=0.00019 Score=45.41 Aligned_cols=21 Identities=38% Similarity=0.637 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.|+++|++|+|||+|+..+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998653
No 475
>PRK04195 replication factor C large subunit; Provisional
Probab=97.36 E-value=0.0027 Score=48.69 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.-.+++.|++|+||||+++.+..
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~ 61 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAN 61 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998654
No 476
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.35 E-value=0.00016 Score=45.67 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHh
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
...-||+|.|.||+|||||..++.
T Consensus 5 r~~PNILvtGTPG~GKstl~~~la 28 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLA 28 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHH
Confidence 455689999999999999999965
No 477
>PRK14532 adenylate kinase; Provisional
Probab=97.35 E-value=0.00019 Score=47.90 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
+|+++|+|||||||+..++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998653
No 478
>PRK00625 shikimate kinase; Provisional
Probab=97.34 E-value=0.0002 Score=47.09 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
+|+++|.+||||||+...+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La 21 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALA 21 (173)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999999864
No 479
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.33 E-value=0.00018 Score=48.34 Aligned_cols=20 Identities=35% Similarity=0.599 Sum_probs=17.6
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 030504 16 LVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~ 35 (176)
|.|.|++|||||||++.+..
T Consensus 2 igi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999998643
No 480
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.33 E-value=0.00019 Score=49.94 Aligned_cols=20 Identities=35% Similarity=0.501 Sum_probs=17.7
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 030504 16 LVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~ 35 (176)
++|+|+.|||||||++.+.+
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999998553
No 481
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.33 E-value=0.00019 Score=47.73 Aligned_cols=20 Identities=35% Similarity=0.559 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
-|+++|++||||||+++.+.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999999865
No 482
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.32 E-value=0.0002 Score=47.31 Aligned_cols=21 Identities=48% Similarity=0.695 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
-|+++|++|||||||++.+..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999998654
No 483
>PRK14531 adenylate kinase; Provisional
Probab=97.30 E-value=0.00025 Score=47.15 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.+|+++|+|||||||+..++..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998643
No 484
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.29 E-value=0.0047 Score=47.64 Aligned_cols=83 Identities=10% Similarity=0.127 Sum_probs=41.6
Q ss_pred cEEEEEEeCCChhhh--hhHHHHHHHHhhhcCCC-CEEEEEeCCCCCc--cccCH-----H-H--HHHHHHcCCeEEEec
Q 030504 87 QCAIIMFDVTARLTY--KNVPTWHRDLCRVCENI-PIVLCGNKVDVKN--RQVKA-----K-Q--VTFHRKKNLQYYEIS 153 (176)
Q Consensus 87 ~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~-p~liv~nK~Dl~~--~~~~~-----~-~--~~~~~~~~~~~~~~S 153 (176)
--+|+|=|.-+...- ......+...... ... |+++|++=+|... ..... + . .++....++..+...
T Consensus 133 ~kvILVEDlPN~~~~~~~~f~~~L~~~l~~-~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FN 211 (519)
T PF03215_consen 133 KKVILVEDLPNVFHRDTSRFREALRQYLRS-SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFN 211 (519)
T ss_pred ceEEEeeccccccchhHHHHHHHHHHHHHc-CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEec
Confidence 455666666542211 2222222222222 344 9999999665332 11100 0 1 134445567777777
Q ss_pred cCCCCChHHHHHHHHHH
Q 030504 154 AKSNYNFEKPFLYLARK 170 (176)
Q Consensus 154 ~~~~~~v~~~~~~l~~~ 170 (176)
+....-+...+..++..
T Consensus 212 pIa~T~mkKaL~rI~~~ 228 (519)
T PF03215_consen 212 PIAPTFMKKALKRILKK 228 (519)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 77666666666666553
No 485
>PRK06547 hypothetical protein; Provisional
Probab=97.29 E-value=0.00031 Score=46.14 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.+...|+|.|.+|||||||.+.+..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~ 37 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAA 37 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998754
No 486
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.29 E-value=0.00025 Score=47.25 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=19.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~ 34 (176)
.-.++++|++|+|||||++.++
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~ 46 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALL 46 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999855
No 487
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.29 E-value=0.0002 Score=47.87 Aligned_cols=21 Identities=29% Similarity=0.571 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
+|+|+|++||||||+...+..
T Consensus 1 ~I~i~G~pGsGKst~a~~La~ 21 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAK 21 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998653
No 488
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.28 E-value=0.00025 Score=46.54 Aligned_cols=21 Identities=33% Similarity=0.719 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~ 36 (176)
.++|+|++|+|||||+|- ..|
T Consensus 27 ~vAi~GpSGaGKSTLLnL-IAG 47 (231)
T COG3840 27 IVAILGPSGAGKSTLLNL-IAG 47 (231)
T ss_pred EEEEECCCCccHHHHHHH-HHh
Confidence 689999999999999996 444
No 489
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.28 E-value=0.00023 Score=46.66 Aligned_cols=21 Identities=43% Similarity=0.517 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
.-+.|+|.+|||||||+.++.
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li 27 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLI 27 (173)
T ss_pred eEEEEECCCCChHHHHHHHHH
Confidence 358999999999999999965
No 490
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.28 E-value=0.00098 Score=44.89 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 030504 16 LVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~~ 36 (176)
|+|+|++|+||||+++.++..
T Consensus 4 ilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999986644
No 491
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.26 E-value=0.00025 Score=48.37 Aligned_cols=20 Identities=40% Similarity=0.895 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 030504 16 LVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~~ 36 (176)
|+++|++|+|||||++. +.+
T Consensus 33 VaiIG~SGaGKSTLLR~-lng 52 (258)
T COG3638 33 VAIIGPSGAGKSTLLRS-LNG 52 (258)
T ss_pred EEEECCCCCcHHHHHHH-Hhc
Confidence 89999999999999998 444
No 492
>PRK02496 adk adenylate kinase; Provisional
Probab=97.26 E-value=0.00029 Score=46.79 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
.|++|+|++||||||+...+.
T Consensus 2 ~~i~i~G~pGsGKst~a~~la 22 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLA 22 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999865
No 493
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.25 E-value=0.00028 Score=45.78 Aligned_cols=21 Identities=38% Similarity=0.474 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
.+|+|.|.||+||||+..++.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH
Confidence 379999999999999999865
No 494
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.24 E-value=0.00026 Score=46.89 Aligned_cols=20 Identities=25% Similarity=0.508 Sum_probs=17.7
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 030504 16 LVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~ 35 (176)
|+++|+|||||||+..++..
T Consensus 2 i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998653
No 495
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.23 E-value=0.00024 Score=47.77 Aligned_cols=19 Identities=26% Similarity=0.532 Sum_probs=16.8
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 030504 16 LVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~ 34 (176)
.+++|++|||||||++.+-
T Consensus 36 TAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 36 TALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred EEEECCCCcCHHHHHHHHH
Confidence 5899999999999999743
No 496
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.23 E-value=0.00028 Score=43.99 Aligned_cols=24 Identities=46% Similarity=0.531 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGE 37 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~ 37 (176)
--++|.|++|+|||++++++....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHh
Confidence 357899999999999999977543
No 497
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.23 E-value=0.0003 Score=46.45 Aligned_cols=24 Identities=54% Similarity=0.671 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
=.++++|++|+|||||++. +.|..
T Consensus 26 e~~~l~G~nGsGKSTLl~~-l~Gl~ 49 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKI-LAGQL 49 (177)
T ss_pred CEEEEECCCCChHHHHHHH-HHcCC
Confidence 3689999999999999997 55554
No 498
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.23 E-value=0.00026 Score=48.47 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=17.0
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 030504 16 LVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~ 34 (176)
|.|.|++|||||||++.+.
T Consensus 2 igI~G~sGSGKTTla~~L~ 20 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQ 20 (220)
T ss_pred EEeeCCCCCCHHHHHHHHH
Confidence 6789999999999999854
No 499
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.23 E-value=0.00027 Score=51.08 Aligned_cols=20 Identities=30% Similarity=0.606 Sum_probs=17.6
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 030504 16 LVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~ 35 (176)
++++|++|||||||++.+.+
T Consensus 32 ~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 78999999999999997543
No 500
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.23 E-value=0.00039 Score=47.00 Aligned_cols=24 Identities=38% Similarity=0.621 Sum_probs=20.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
+.--|+|+|++|||||||++.+..
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~ 27 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLE 27 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 345699999999999999998554
Done!