Query 030504
Match_columns 176
No_of_seqs 133 out of 1365
Neff 11.2
Searched_HMMs 29240
Date Tue Mar 26 00:02:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030504.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030504hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 2.6E-44 9E-49 242.8 17.7 173 1-173 1-176 (216)
2 3kkq_A RAS-related protein M-R 100.0 1.1E-37 3.8E-42 206.0 20.3 171 3-174 8-183 (183)
3 3gj0_A GTP-binding nuclear pro 100.0 3.1E-38 1.1E-42 214.5 17.3 169 7-175 9-177 (221)
4 1z0f_A RAB14, member RAS oncog 100.0 2.6E-37 8.8E-42 203.3 19.4 168 7-174 9-179 (179)
5 3q3j_B RHO-related GTP-binding 100.0 1.6E-37 5.6E-42 210.1 18.1 167 8-175 22-205 (214)
6 2a5j_A RAS-related protein RAB 100.0 4.9E-37 1.7E-41 204.3 19.7 167 8-174 16-185 (191)
7 2hup_A RAS-related protein RAB 100.0 1.7E-37 5.9E-42 208.1 17.4 164 11-174 27-194 (201)
8 3tkl_A RAS-related protein RAB 100.0 1.3E-36 4.4E-41 202.9 20.7 165 10-174 13-180 (196)
9 1wms_A RAB-9, RAB9, RAS-relate 100.0 1.5E-36 5.2E-41 199.4 20.7 167 10-176 4-177 (177)
10 3tw8_B RAS-related protein RAB 100.0 1.5E-36 5.2E-41 200.0 20.1 165 10-174 6-172 (181)
11 1r2q_A RAS-related protein RAB 100.0 7.7E-37 2.6E-41 199.4 18.4 163 11-173 4-169 (170)
12 2gf9_A RAS-related protein RAB 100.0 2.4E-36 8.1E-41 200.7 21.0 163 12-174 21-186 (189)
13 1z2a_A RAS-related protein RAB 100.0 9.5E-37 3.3E-41 198.7 18.6 164 11-174 3-168 (168)
14 3reg_A RHO-like small GTPase; 100.0 1.7E-36 6E-41 202.1 20.2 166 9-175 19-190 (194)
15 1ek0_A Protein (GTP-binding pr 100.0 7.6E-37 2.6E-41 199.4 17.9 163 12-174 2-170 (170)
16 1x3s_A RAS-related protein RAB 100.0 1.5E-36 5E-41 202.4 19.5 165 11-175 13-180 (195)
17 2efe_B Small GTP-binding prote 100.0 1.2E-36 4.1E-41 200.6 18.8 169 7-175 6-177 (181)
18 3cpj_B GTP-binding protein YPT 100.0 1.3E-36 4.4E-41 206.9 19.4 174 1-174 1-177 (223)
19 3t5g_A GTP-binding protein RHE 100.0 1.6E-36 5.4E-41 200.1 19.2 164 11-175 4-171 (181)
20 1z08_A RAS-related protein RAB 100.0 1.7E-36 5.7E-41 198.0 19.0 163 11-173 4-169 (170)
21 2ew1_A RAS-related protein RAB 100.0 1.3E-36 4.4E-41 203.7 18.9 162 12-173 25-189 (201)
22 2g6b_A RAS-related protein RAB 100.0 4.8E-36 1.6E-40 197.5 20.8 167 8-174 5-175 (180)
23 3ihw_A Centg3; RAS, centaurin, 100.0 2.3E-36 7.8E-41 200.0 19.2 161 8-175 15-182 (184)
24 2hxs_A RAB-26, RAS-related pro 100.0 1.2E-36 4.1E-41 200.1 17.3 166 10-175 3-175 (178)
25 3c5c_A RAS-like protein 12; GD 100.0 2.6E-36 9E-41 200.2 19.0 163 9-173 17-186 (187)
26 2p5s_A RAS and EF-hand domain 100.0 1E-36 3.6E-41 204.0 16.9 165 10-174 25-198 (199)
27 2fg5_A RAB-22B, RAS-related pr 100.0 1.8E-36 6E-41 201.8 17.9 165 11-175 21-188 (192)
28 1g16_A RAS-related protein SEC 100.0 3.3E-36 1.1E-40 196.5 18.8 163 12-174 2-166 (170)
29 2fu5_C RAS-related protein RAB 100.0 9.7E-37 3.3E-41 201.5 16.3 162 12-173 7-171 (183)
30 2fn4_A P23, RAS-related protei 100.0 7.5E-36 2.6E-40 196.6 19.9 166 8-174 4-173 (181)
31 2bme_A RAB4A, RAS-related prot 100.0 7.3E-36 2.5E-40 197.7 19.9 163 11-173 8-173 (186)
32 1z0j_A RAB-22, RAS-related pro 100.0 6.6E-36 2.3E-40 195.1 19.4 163 11-173 4-169 (170)
33 2atx_A Small GTP binding prote 100.0 6.2E-36 2.1E-40 199.4 19.5 162 11-173 16-193 (194)
34 2il1_A RAB12; G-protein, GDP, 100.0 2.1E-36 7.1E-41 201.5 17.1 166 9-174 22-191 (192)
35 2oil_A CATX-8, RAS-related pro 100.0 6E-36 2.1E-40 199.3 19.3 164 11-174 23-189 (193)
36 1m7b_A RND3/RHOE small GTP-bin 100.0 3.7E-36 1.3E-40 198.9 18.0 164 10-174 4-184 (184)
37 2y8e_A RAB-protein 6, GH09086P 100.0 4.5E-36 1.5E-40 197.4 18.1 165 9-173 10-177 (179)
38 2q3h_A RAS homolog gene family 100.0 4.7E-36 1.6E-40 201.0 18.5 165 9-174 16-196 (201)
39 3cbq_A GTP-binding protein REM 100.0 4.3E-36 1.5E-40 200.4 18.1 167 9-175 19-190 (195)
40 1u8z_A RAS-related protein RAL 100.0 7.4E-36 2.5E-40 194.3 18.6 163 11-174 2-168 (168)
41 1c1y_A RAS-related protein RAP 100.0 1.4E-35 4.6E-40 193.1 19.8 160 12-172 2-166 (167)
42 2bcg_Y Protein YP2, GTP-bindin 100.0 1.4E-35 4.8E-40 199.4 20.4 164 11-174 6-172 (206)
43 3oes_A GTPase rhebl1; small GT 100.0 3.3E-36 1.1E-40 201.8 17.3 166 9-175 20-189 (201)
44 1z06_A RAS-related protein RAB 100.0 4E-36 1.4E-40 199.6 17.4 165 9-173 16-188 (189)
45 2j0v_A RAC-like GTP-binding pr 100.0 5.6E-36 1.9E-40 202.2 18.4 164 11-175 7-182 (212)
46 2o52_A RAS-related protein RAB 100.0 4E-36 1.4E-40 201.3 17.5 163 11-173 23-188 (200)
47 1zbd_A Rabphilin-3A; G protein 100.0 9.3E-36 3.2E-40 199.8 19.2 163 11-173 6-171 (203)
48 1mh1_A RAC1; GTP-binding, GTPa 100.0 1.2E-35 4.2E-40 196.5 19.0 164 11-175 3-182 (186)
49 2j1l_A RHO-related GTP-binding 100.0 7.6E-36 2.6E-40 201.9 18.4 166 9-175 30-211 (214)
50 3q85_A GTP-binding protein REM 100.0 1.3E-35 4.3E-40 193.7 18.6 162 13-174 2-168 (169)
51 2gco_A H9, RHO-related GTP-bin 100.0 1.8E-35 6.2E-40 198.2 19.6 165 8-173 20-200 (201)
52 3bc1_A RAS-related protein RAB 100.0 1.6E-35 5.4E-40 197.2 18.9 164 10-173 8-185 (195)
53 1gwn_A RHO-related GTP-binding 100.0 7.8E-36 2.7E-40 200.5 17.5 163 11-174 26-205 (205)
54 3t1o_A Gliding protein MGLA; G 100.0 8.4E-37 2.9E-41 203.9 12.7 165 9-174 10-193 (198)
55 1vg8_A RAS-related protein RAB 100.0 2.4E-35 8.3E-40 198.3 19.9 164 10-173 5-175 (207)
56 2a9k_A RAS-related protein RAL 100.0 1.3E-35 4.3E-40 196.5 18.0 166 8-174 13-182 (187)
57 3dz8_A RAS-related protein RAB 100.0 2.8E-37 9.5E-42 205.5 10.0 163 12-174 22-187 (191)
58 2bov_A RAla, RAS-related prote 100.0 2E-35 6.9E-40 198.5 19.0 165 8-173 9-177 (206)
59 4bas_A ADP-ribosylation factor 100.0 9.3E-36 3.2E-40 199.1 17.1 163 8-174 12-190 (199)
60 3cph_A RAS-related protein SEC 100.0 2.7E-35 9.4E-40 198.8 18.9 165 9-173 16-182 (213)
61 1ky3_A GTP-binding protein YPT 100.0 1.8E-35 6.2E-40 195.0 17.3 165 10-174 5-179 (182)
62 2fv8_A H6, RHO-related GTP-bin 100.0 5.3E-35 1.8E-39 196.8 19.6 163 11-174 23-201 (207)
63 3clv_A RAB5 protein, putative; 100.0 6E-35 2.1E-39 195.9 19.8 163 11-174 5-205 (208)
64 4dsu_A GTPase KRAS, isoform 2B 100.0 7.6E-35 2.6E-39 193.1 19.9 162 11-173 2-166 (189)
65 1kao_A RAP2A; GTP-binding prot 100.0 2.4E-35 8.3E-40 191.7 16.7 161 12-173 2-166 (167)
66 3q72_A GTP-binding protein RAD 100.0 5.1E-35 1.8E-39 190.3 18.1 160 13-174 2-165 (166)
67 2nzj_A GTP-binding protein REM 100.0 2.7E-35 9.3E-40 193.1 16.7 162 12-174 3-170 (175)
68 2ce2_X GTPase HRAS; signaling 100.0 1.7E-34 5.9E-39 187.4 20.3 161 12-173 2-165 (166)
69 3bwd_D RAC-like GTP-binding pr 100.0 6.5E-36 2.2E-40 197.2 13.5 162 11-173 6-181 (182)
70 2iwr_A Centaurin gamma 1; ANK 100.0 6E-35 2E-39 192.1 17.8 156 11-173 5-169 (178)
71 2f7s_A C25KG, RAS-related prot 100.0 1.4E-35 4.7E-40 201.0 14.9 163 11-173 23-199 (217)
72 2atv_A RERG, RAS-like estrogen 100.0 7.4E-35 2.5E-39 194.5 18.1 162 11-174 26-192 (196)
73 4djt_A GTP-binding nuclear pro 100.0 4.3E-35 1.5E-39 198.6 17.1 167 9-175 7-177 (218)
74 3con_A GTPase NRAS; structural 100.0 2.5E-34 8.6E-39 191.0 20.4 165 9-174 17-184 (190)
75 3l0i_B RAS-related protein RAB 100.0 4.4E-37 1.5E-41 205.8 6.8 165 11-175 31-198 (199)
76 2yc2_C IFT27, small RAB-relate 100.0 4.9E-36 1.7E-40 201.7 11.5 163 11-173 18-192 (208)
77 4gzl_A RAS-related C3 botulinu 100.0 8.6E-35 3E-39 195.4 17.4 161 10-171 27-203 (204)
78 1zd9_A ADP-ribosylation factor 100.0 3.6E-35 1.2E-39 194.8 15.4 161 11-175 20-187 (188)
79 2h57_A ADP-ribosylation factor 100.0 1.1E-34 3.6E-39 192.8 16.6 160 11-174 19-188 (190)
80 2erx_A GTP-binding protein DI- 100.0 2E-34 6.9E-39 188.3 17.5 162 12-174 2-168 (172)
81 2gf0_A GTP-binding protein DI- 100.0 2.2E-34 7.6E-39 192.4 17.9 163 11-174 6-172 (199)
82 1ksh_A ARF-like protein 2; sma 100.0 1.9E-34 6.5E-39 191.0 17.3 159 11-174 16-181 (186)
83 2g3y_A GTP-binding protein GEM 100.0 2E-34 6.8E-39 194.0 17.6 164 10-174 34-204 (211)
84 1zj6_A ADP-ribosylation factor 100.0 9.2E-35 3.2E-39 192.7 15.5 160 11-175 14-180 (187)
85 2h17_A ADP-ribosylation factor 100.0 4.1E-35 1.4E-39 193.5 13.4 158 8-170 16-180 (181)
86 1f6b_A SAR1; gtpases, N-termin 100.0 1.7E-34 5.9E-39 193.1 15.2 158 9-171 21-197 (198)
87 1upt_A ARL1, ADP-ribosylation 100.0 1.6E-33 5.3E-38 184.0 19.4 159 11-174 5-170 (171)
88 1m2o_B GTP-binding protein SAR 100.0 5E-34 1.7E-38 189.7 16.4 157 9-170 19-189 (190)
89 2b6h_A ADP-ribosylation factor 100.0 5.3E-34 1.8E-38 189.8 15.6 161 9-174 25-192 (192)
90 1fzq_A ADP-ribosylation factor 100.0 4.6E-34 1.6E-38 188.5 14.3 160 10-174 13-179 (181)
91 1r8s_A ADP-ribosylation factor 100.0 4.8E-34 1.7E-38 185.3 14.0 156 14-174 1-163 (164)
92 1moz_A ARL1, ADP-ribosylation 100.0 4.6E-34 1.6E-38 188.6 13.2 159 11-174 16-181 (183)
93 2cjw_A GTP-binding protein GEM 100.0 8.8E-33 3E-37 183.9 18.6 162 11-173 4-172 (192)
94 2x77_A ADP-ribosylation factor 100.0 2E-33 6.9E-38 186.5 14.9 159 11-174 20-185 (189)
95 2zej_A Dardarin, leucine-rich 100.0 5.6E-34 1.9E-38 188.5 10.6 163 13-175 2-180 (184)
96 3llu_A RAS-related GTP-binding 100.0 2.6E-33 8.9E-38 187.0 13.7 162 8-171 15-195 (196)
97 2wkq_A NPH1-1, RAS-related C3 100.0 4.1E-32 1.4E-36 194.5 19.2 163 12-175 154-332 (332)
98 3o47_A ADP-ribosylation factor 100.0 3.2E-32 1.1E-36 194.6 15.4 160 11-175 163-329 (329)
99 2f9l_A RAB11B, member RAS onco 100.0 5.7E-31 2E-35 176.1 20.4 162 12-173 4-168 (199)
100 3th5_A RAS-related C3 botulinu 100.0 3.8E-35 1.3E-39 197.0 0.0 160 11-171 28-203 (204)
101 3c5h_A Glucocorticoid receptor 100.0 7.6E-33 2.6E-37 191.6 10.7 166 7-172 13-254 (255)
102 1oix_A RAS-related protein RAB 100.0 1.7E-30 5.8E-35 172.8 20.0 160 12-171 28-190 (191)
103 2wji_A Ferrous iron transport 100.0 2.7E-31 9.3E-36 172.7 14.4 154 12-172 2-164 (165)
104 2fh5_B SR-beta, signal recogni 100.0 4.7E-31 1.6E-35 178.3 15.2 158 11-171 5-214 (214)
105 3lvq_E ARF-GAP with SH3 domain 100.0 1.1E-30 3.9E-35 196.1 16.6 160 11-175 320-486 (497)
106 2lkc_A Translation initiation 100.0 1.1E-30 3.9E-35 171.5 13.9 159 9-173 4-171 (178)
107 2qu8_A Putative nucleolar GTP- 100.0 2E-30 6.7E-35 176.9 14.9 164 8-173 24-205 (228)
108 3r7w_B Gtpase2, GTP-binding pr 100.0 1.9E-31 6.4E-36 187.8 7.5 154 15-174 1-175 (331)
109 2wjg_A FEOB, ferrous iron tran 100.0 5.3E-30 1.8E-34 169.8 14.0 160 9-175 3-171 (188)
110 3r7w_A Gtpase1, GTP-binding pr 100.0 8.4E-30 2.9E-34 180.6 15.0 158 12-173 2-181 (307)
111 1svi_A GTP-binding protein YSX 100.0 1.1E-29 3.8E-34 169.1 13.8 157 10-172 20-194 (195)
112 3iev_A GTP-binding protein ERA 100.0 2.9E-29 9.9E-34 177.8 14.7 166 7-175 4-184 (308)
113 2dyk_A GTP-binding protein; GT 100.0 1.6E-29 5.4E-34 163.4 11.6 149 14-171 2-160 (161)
114 3a1s_A Iron(II) transport prot 100.0 3E-29 1E-33 173.6 13.4 155 11-172 3-166 (258)
115 3dpu_A RAB family protein; roc 100.0 6.8E-30 2.3E-34 193.2 10.3 164 9-175 37-210 (535)
116 2cxx_A Probable GTP-binding pr 100.0 4.9E-30 1.7E-34 170.1 8.0 155 14-175 2-186 (190)
117 3pqc_A Probable GTP-binding pr 100.0 1.5E-28 5E-33 163.5 14.6 157 9-174 19-195 (195)
118 2gj8_A MNME, tRNA modification 100.0 1E-29 3.5E-34 166.3 7.6 155 12-174 3-167 (172)
119 3b1v_A Ferrous iron uptake tra 100.0 6.8E-29 2.3E-33 172.8 10.0 152 13-172 3-163 (272)
120 4dhe_A Probable GTP-binding pr 100.0 2.1E-28 7.3E-33 166.2 10.8 163 9-174 25-212 (223)
121 3iby_A Ferrous iron transport 100.0 2.3E-28 7.9E-33 168.9 10.1 150 14-170 2-164 (256)
122 3k53_A Ferrous iron transport 100.0 1.6E-27 5.5E-32 166.3 13.9 157 12-174 2-167 (271)
123 3i8s_A Ferrous iron transport 100.0 2.1E-28 7.2E-33 170.8 9.2 156 12-174 2-170 (274)
124 1wf3_A GTP-binding protein; GT 99.9 2.1E-27 7.2E-32 167.5 10.8 159 11-174 5-174 (301)
125 3gee_A MNME, tRNA modification 99.9 9.9E-27 3.4E-31 172.7 13.6 158 12-172 232-397 (476)
126 3qq5_A Small GTP-binding prote 99.9 1.4E-27 4.8E-32 174.7 8.8 158 9-173 30-196 (423)
127 2e87_A Hypothetical protein PH 99.9 9.9E-26 3.4E-30 162.8 16.1 161 11-173 165-336 (357)
128 1nrj_B SR-beta, signal recogni 99.9 1.4E-27 4.7E-32 161.7 5.7 140 10-158 9-169 (218)
129 3sjy_A Translation initiation 99.9 2.7E-25 9.3E-30 162.8 14.6 164 8-173 3-192 (403)
130 2hjg_A GTP-binding protein ENG 99.9 2E-26 6.8E-31 170.4 8.6 159 11-173 173-349 (436)
131 1mky_A Probable GTP-binding pr 99.9 6.3E-26 2.2E-30 167.8 11.1 151 15-173 3-166 (439)
132 1cip_A Protein (guanine nucleo 99.9 2.4E-25 8.1E-30 159.7 13.3 115 60-174 191-345 (353)
133 3cb4_D GTP-binding protein LEP 99.9 2.4E-25 8.2E-30 168.9 13.3 159 12-173 3-182 (599)
134 4dcu_A GTP-binding protein ENG 99.9 1.2E-25 4.1E-30 167.1 10.3 160 10-173 192-369 (456)
135 2hjg_A GTP-binding protein ENG 99.9 4.5E-26 1.5E-30 168.5 7.7 154 13-173 3-165 (436)
136 1lnz_A SPO0B-associated GTP-bi 99.9 1.6E-25 5.3E-30 160.1 10.0 158 15-175 160-332 (342)
137 3ohm_A Guanine nucleotide-bind 99.9 4.7E-25 1.6E-29 156.1 12.2 115 60-174 165-319 (327)
138 1xzp_A Probable tRNA modificat 99.9 8E-26 2.7E-30 168.0 8.3 152 13-172 243-404 (482)
139 2xtp_A GTPase IMAP family memb 99.9 3.6E-25 1.2E-29 153.6 10.2 167 8-175 17-210 (260)
140 2ywe_A GTP-binding protein LEP 99.9 8.5E-25 2.9E-29 165.7 12.5 159 12-173 5-184 (600)
141 3izy_P Translation initiation 99.9 1.8E-26 6E-31 172.9 3.3 157 12-172 3-167 (537)
142 1s0u_A EIF-2-gamma, translatio 99.9 6.2E-24 2.1E-28 155.9 16.7 162 10-173 5-198 (408)
143 2xtz_A Guanine nucleotide-bind 99.9 4.1E-25 1.4E-29 158.4 9.8 114 60-173 181-345 (354)
144 1ega_A Protein (GTP-binding pr 99.9 1.8E-24 6.3E-29 152.7 12.7 159 11-174 6-176 (301)
145 1wb1_A Translation elongation 99.9 1.9E-24 6.4E-29 161.3 13.1 157 9-172 15-188 (482)
146 3geh_A MNME, tRNA modification 99.9 1.8E-25 6.1E-30 165.5 7.0 154 12-174 223-385 (462)
147 3lxx_A GTPase IMAP family memb 99.9 2.5E-24 8.4E-29 147.7 12.0 164 9-174 25-215 (239)
148 3tr5_A RF-3, peptide chain rel 99.9 1.8E-24 6.2E-29 162.5 11.8 118 12-132 12-149 (528)
149 3lxw_A GTPase IMAP family memb 99.9 3.5E-24 1.2E-28 147.5 12.1 165 10-174 18-209 (247)
150 3j2k_7 ERF3, eukaryotic polype 99.9 1.1E-23 3.8E-28 155.6 15.0 155 9-165 13-217 (439)
151 1d2e_A Elongation factor TU (E 99.9 1.6E-24 5.6E-29 158.4 10.4 158 12-172 2-194 (397)
152 1kk1_A EIF2gamma; initiation o 99.9 2.3E-23 7.9E-28 153.0 16.0 163 9-173 6-200 (410)
153 3p26_A Elongation factor 1 alp 99.9 2.6E-24 9E-29 160.8 10.6 152 11-162 31-227 (483)
154 1zcb_A G alpha I/13; GTP-bindi 99.9 1.2E-23 4.2E-28 151.3 13.4 114 60-173 199-353 (362)
155 4fid_A G protein alpha subunit 99.9 2.2E-24 7.6E-29 153.2 8.8 115 59-173 158-328 (340)
156 4dcu_A GTP-binding protein ENG 99.9 1.7E-24 5.9E-29 160.9 7.3 156 11-173 21-185 (456)
157 2c78_A Elongation factor TU-A; 99.9 2.2E-24 7.5E-29 158.2 7.7 160 10-172 8-211 (405)
158 3t5d_A Septin-7; GTP-binding p 99.9 4.1E-24 1.4E-28 149.3 8.6 157 12-171 7-202 (274)
159 1jny_A EF-1-alpha, elongation 99.9 1.4E-24 4.9E-29 160.3 6.7 153 11-164 4-204 (435)
160 2ged_A SR-beta, signal recogni 99.9 4.6E-24 1.6E-28 141.7 8.2 117 11-136 46-175 (193)
161 1g7s_A Translation initiation 99.9 2.6E-23 9E-28 157.9 13.4 156 11-172 3-217 (594)
162 1zo1_I IF2, translation initia 99.9 8.3E-25 2.8E-29 162.7 4.7 155 11-170 2-164 (501)
163 1mky_A Probable GTP-binding pr 99.9 2.3E-23 7.9E-28 154.2 12.2 157 11-173 178-355 (439)
164 1zun_B Sulfate adenylate trans 99.9 1E-23 3.5E-28 155.8 9.9 151 11-163 22-214 (434)
165 2elf_A Protein translation elo 99.9 3.5E-23 1.2E-27 149.7 11.4 143 15-172 23-179 (370)
166 2qtf_A Protein HFLX, GTP-bindi 99.9 1.1E-22 3.9E-27 146.6 14.0 158 13-173 178-354 (364)
167 2qag_A Septin-2, protein NEDD5 99.9 4.8E-24 1.6E-28 153.9 6.2 158 12-173 36-233 (361)
168 1r5b_A Eukaryotic peptide chai 99.9 1E-23 3.5E-28 156.9 6.5 154 11-164 41-243 (467)
169 3avx_A Elongation factor TS, e 99.9 6E-23 2.1E-27 163.1 11.0 161 9-172 292-485 (1289)
170 3izq_1 HBS1P, elongation facto 99.9 4.5E-23 1.5E-27 157.4 8.9 153 10-163 164-362 (611)
171 1f60_A Elongation factor EEF1A 99.9 2.1E-23 7E-28 154.9 6.7 151 11-163 5-202 (458)
172 1pui_A ENGB, probable GTP-bind 99.9 6.6E-22 2.3E-26 132.9 11.7 158 11-174 24-200 (210)
173 2aka_B Dynamin-1; fusion prote 99.9 1.6E-22 5.4E-27 142.9 8.1 159 10-170 23-250 (299)
174 2h5e_A Peptide chain release f 99.9 1.1E-21 3.8E-26 147.5 11.4 118 11-131 11-148 (529)
175 3mca_A HBS1, elongation factor 99.9 6.5E-23 2.2E-27 156.1 4.6 159 10-170 174-394 (592)
176 2dy1_A Elongation factor G; tr 99.9 2E-21 7E-26 149.9 12.5 117 11-130 7-139 (665)
177 1dar_A EF-G, elongation factor 99.9 3.1E-21 1.1E-25 149.3 13.1 119 10-131 9-143 (691)
178 1u0l_A Probable GTPase ENGC; p 99.9 4.1E-22 1.4E-26 140.7 6.3 134 28-169 32-169 (301)
179 1udx_A The GTP-binding protein 99.8 2.3E-20 8E-25 136.3 13.0 158 15-175 159-327 (416)
180 2qnr_A Septin-2, protein NEDD5 99.8 2.1E-21 7.3E-26 137.0 7.2 161 10-174 15-215 (301)
181 3def_A T7I23.11 protein; chlor 99.8 2.7E-20 9.4E-25 129.1 11.8 119 11-131 34-165 (262)
182 2rdo_7 EF-G, elongation factor 99.8 1.3E-19 4.4E-24 140.5 15.5 119 10-131 7-148 (704)
183 1azs_C GS-alpha; complex (lyas 99.8 1.2E-20 3.9E-25 137.0 8.9 113 61-173 216-385 (402)
184 2j69_A Bacterial dynamin-like 99.8 2.6E-20 8.9E-25 144.3 11.0 108 63-172 175-324 (695)
185 2xex_A Elongation factor G; GT 99.8 8.2E-20 2.8E-24 141.5 13.2 119 10-131 7-141 (693)
186 1h65_A Chloroplast outer envel 99.8 4.4E-20 1.5E-24 128.7 10.3 119 11-131 37-168 (270)
187 1jwy_B Dynamin A GTPase domain 99.8 1.2E-19 4.2E-24 129.0 11.7 109 62-174 131-263 (315)
188 1wxq_A GTP-binding protein; st 99.8 1.2E-20 4.1E-25 137.5 4.9 85 14-98 1-114 (397)
189 2qag_C Septin-7; cell cycle, c 99.8 1.8E-19 6.1E-24 131.7 10.4 160 9-171 27-225 (418)
190 3vqt_A RF-3, peptide chain rel 99.8 1.3E-18 4.3E-23 131.5 12.5 118 12-132 30-167 (548)
191 3t34_A Dynamin-related protein 99.8 6E-20 2.1E-24 132.8 4.3 152 14-167 35-255 (360)
192 2x2e_A Dynamin-1; nitration, h 99.8 9.9E-20 3.4E-24 131.3 4.2 157 11-169 29-254 (353)
193 2wsm_A Hydrogenase expression/ 99.8 1.7E-18 5.9E-23 117.2 8.7 152 12-173 29-214 (221)
194 3p32_A Probable GTPase RV1496/ 99.8 1.1E-18 3.8E-23 125.9 7.7 103 61-173 171-284 (355)
195 2hf9_A Probable hydrogenase ni 99.7 6.2E-19 2.1E-23 119.7 4.3 152 12-173 37-224 (226)
196 1n0u_A EF-2, elongation factor 99.7 1.2E-17 4E-22 131.9 8.6 118 11-131 17-164 (842)
197 1jal_A YCHF protein; nucleotid 99.7 1.9E-16 6.5E-21 113.5 14.0 83 13-97 2-108 (363)
198 3j25_A Tetracycline resistance 99.7 4.5E-18 1.5E-22 130.8 3.4 116 13-131 2-133 (638)
199 2www_A Methylmalonic aciduria 99.7 1.7E-17 6E-22 119.2 5.4 101 61-171 166-277 (349)
200 2qpt_A EH domain-containing pr 99.7 3.9E-17 1.3E-21 123.6 7.4 118 11-132 63-233 (550)
201 1yrb_A ATP(GTP)binding protein 99.7 1.3E-16 4.4E-21 110.6 8.4 113 62-175 109-259 (262)
202 2p67_A LAO/AO transport system 99.7 4.3E-17 1.5E-21 117.0 4.6 102 61-172 148-260 (341)
203 4fn5_A EF-G 1, elongation fact 99.7 3E-15 1E-19 116.6 14.7 118 11-131 11-151 (709)
204 2dby_A GTP-binding protein; GD 99.6 3.6E-15 1.2E-19 107.5 12.2 78 14-97 2-111 (368)
205 3l82_B F-box only protein 4; T 99.6 3.1E-16 1.1E-20 103.1 5.7 105 69-174 109-224 (227)
206 2yv5_A YJEQ protein; hydrolase 99.6 6.4E-15 2.2E-19 104.0 10.0 96 72-169 66-165 (302)
207 3zvr_A Dynamin-1; hydrolase, D 99.6 8.8E-15 3E-19 113.5 9.6 105 63-169 151-274 (772)
208 3l2o_B F-box only protein 4; s 99.6 8.5E-15 2.9E-19 100.9 7.0 105 69-174 194-309 (312)
209 4a9a_A Ribosome-interacting GT 99.5 8.5E-14 2.9E-18 100.4 11.2 118 12-131 71-196 (376)
210 2qm8_A GTPase/ATPase; G protei 99.4 4.9E-14 1.7E-18 100.9 4.5 102 61-172 147-260 (337)
211 2ohf_A Protein OLA1, GTP-bindi 99.4 1.5E-13 5E-18 99.6 5.2 88 11-98 20-129 (396)
212 1ni3_A YCHF GTPase, YCHF GTP-b 99.4 3.5E-11 1.2E-15 87.3 14.2 86 12-97 19-127 (392)
213 3h2y_A GTPase family protein; 99.2 1.1E-11 3.6E-16 89.8 6.5 96 71-171 55-158 (368)
214 1puj_A YLQF, conserved hypothe 99.2 5E-11 1.7E-15 83.3 7.2 100 66-172 3-105 (282)
215 3ec1_A YQEH GTPase; atnos1, at 99.2 4.3E-12 1.5E-16 91.9 0.9 139 13-160 162-318 (369)
216 3ec1_A YQEH GTPase; atnos1, at 99.1 4.1E-11 1.4E-15 86.8 5.2 97 71-172 57-161 (369)
217 3h2y_A GTPase family protein; 99.1 1.1E-11 3.8E-16 89.7 2.1 135 13-153 160-310 (368)
218 2j37_W Signal recognition part 99.1 8.7E-11 3E-15 87.9 5.3 152 11-170 99-310 (504)
219 3sop_A Neuronal-specific septi 99.1 8.6E-10 3E-14 76.6 8.6 135 13-151 2-178 (270)
220 2qag_B Septin-6, protein NEDD5 99.0 1.1E-09 3.7E-14 80.2 8.6 139 13-155 42-218 (427)
221 1tq4_A IIGP1, interferon-induc 99.0 5.5E-09 1.9E-13 76.4 11.5 156 13-174 69-254 (413)
222 1puj_A YLQF, conserved hypothe 98.8 5.3E-09 1.8E-13 73.1 5.5 60 11-74 118-177 (282)
223 3cnl_A YLQF, putative uncharac 98.8 2.1E-09 7.3E-14 74.2 3.3 92 69-168 4-96 (262)
224 3cnl_A YLQF, putative uncharac 98.8 2.8E-09 9.6E-14 73.7 3.1 57 14-74 100-156 (262)
225 3dm5_A SRP54, signal recogniti 98.8 6.8E-08 2.3E-12 71.1 10.0 142 12-162 99-280 (443)
226 1t9h_A YLOQ, probable GTPase E 98.8 8.9E-09 3E-13 72.5 4.9 91 74-166 75-170 (307)
227 2v3c_C SRP54, signal recogniti 98.7 4.2E-09 1.4E-13 77.7 1.3 85 60-152 179-271 (432)
228 2rcn_A Probable GTPase ENGC; Y 98.5 5.7E-07 2E-11 64.6 8.7 83 82-167 127-213 (358)
229 3kl4_A SRP54, signal recogniti 98.5 1.9E-07 6.4E-12 68.7 6.2 92 61-161 179-278 (433)
230 1j8m_F SRP54, signal recogniti 98.5 3.5E-07 1.2E-11 64.3 6.4 92 61-162 180-280 (297)
231 1f5n_A Interferon-induced guan 98.4 3.7E-07 1.3E-11 69.7 5.8 65 10-74 35-103 (592)
232 1bif_A 6-phosphofructo-2-kinas 98.4 1E-08 3.5E-13 76.6 -2.9 110 11-124 37-156 (469)
233 3e70_C DPA, signal recognition 98.3 2.5E-06 8.5E-11 60.8 7.7 91 63-162 213-309 (328)
234 3szr_A Interferon-induced GTP- 98.3 1.6E-06 5.4E-11 66.8 6.3 20 16-35 48-67 (608)
235 2xxa_A Signal recognition part 97.9 1.7E-05 5.7E-10 58.6 6.0 82 61-150 183-271 (433)
236 4dzz_A Plasmid partitioning pr 97.8 5.5E-06 1.9E-10 54.8 2.0 85 61-150 75-162 (206)
237 3q5d_A Atlastin-1; G protein, 97.8 3.3E-05 1.1E-09 57.2 5.8 26 10-35 64-89 (447)
238 1ye8_A Protein THEP1, hypothet 97.8 1.7E-05 5.8E-10 51.5 3.1 20 15-34 2-21 (178)
239 1ex7_A Guanylate kinase; subst 97.7 6.8E-06 2.3E-10 53.7 0.9 20 16-35 4-23 (186)
240 2ffh_A Protein (FFH); SRP54, s 97.7 8.6E-05 3E-09 54.6 6.8 86 61-153 180-271 (425)
241 1kgd_A CASK, peripheral plasma 97.7 2.1E-05 7E-10 51.1 2.9 22 14-35 6-27 (180)
242 3cwq_A Para family chromosome 97.7 4.4E-05 1.5E-09 50.8 4.5 85 61-150 67-153 (209)
243 4gp7_A Metallophosphoesterase; 97.7 2.4E-05 8.1E-10 50.4 2.8 20 15-34 11-30 (171)
244 1lvg_A Guanylate kinase, GMP k 97.6 2.7E-05 9.2E-10 51.4 2.9 22 14-35 5-26 (198)
245 1zp6_A Hypothetical protein AT 97.6 4.3E-05 1.5E-09 49.9 2.9 22 14-35 10-31 (191)
246 3a00_A Guanylate kinase, GMP k 97.6 4.2E-05 1.4E-09 49.9 2.8 20 16-35 4-23 (186)
247 1t9h_A YLOQ, probable GTPase E 97.5 2E-05 6.9E-10 55.5 1.2 22 14-35 174-195 (307)
248 3tr0_A Guanylate kinase, GMP k 97.5 4.6E-05 1.6E-09 50.3 2.9 21 15-35 9-29 (205)
249 1znw_A Guanylate kinase, GMP k 97.5 5.3E-05 1.8E-09 50.3 2.8 21 15-35 22-42 (207)
250 1s96_A Guanylate kinase, GMP k 97.5 5.5E-05 1.9E-09 50.8 2.9 22 14-35 17-38 (219)
251 3c8u_A Fructokinase; YP_612366 97.5 7.5E-05 2.6E-09 49.6 3.5 24 11-34 20-43 (208)
252 3ney_A 55 kDa erythrocyte memb 97.5 8.1E-05 2.8E-09 49.0 3.6 24 12-35 18-41 (197)
253 1z6g_A Guanylate kinase; struc 97.5 5.8E-05 2E-09 50.6 2.8 22 14-35 24-45 (218)
254 2cdn_A Adenylate kinase; phosp 97.5 9.6E-05 3.3E-09 48.7 3.8 26 10-35 17-42 (201)
255 3tau_A Guanylate kinase, GMP k 97.5 9.5E-05 3.3E-09 49.1 3.5 25 12-36 7-31 (208)
256 1ly1_A Polynucleotide kinase; 97.4 0.00011 3.7E-09 47.4 3.5 22 14-35 3-24 (181)
257 2qor_A Guanylate kinase; phosp 97.4 8.1E-05 2.8E-09 49.3 2.9 22 14-35 13-34 (204)
258 2bbw_A Adenylate kinase 4, AK4 97.4 9.6E-05 3.3E-09 50.4 3.3 22 13-34 27-48 (246)
259 1kag_A SKI, shikimate kinase I 97.4 9E-05 3.1E-09 47.6 2.9 21 14-34 5-25 (173)
260 3tif_A Uncharacterized ABC tra 97.4 8.8E-05 3E-09 50.3 2.9 23 15-38 33-55 (235)
261 1htw_A HI0065; nucleotide-bind 97.4 9.5E-05 3.3E-09 47.0 2.8 22 15-36 35-56 (158)
262 3lw7_A Adenylate kinase relate 97.4 9.6E-05 3.3E-09 47.3 2.9 20 14-33 2-21 (179)
263 1knq_A Gluconate kinase; ALFA/ 97.4 0.00016 5.5E-09 46.5 3.9 22 13-34 8-29 (175)
264 3kb2_A SPBC2 prophage-derived 97.4 0.00011 3.7E-09 47.1 3.0 20 15-34 3-22 (173)
265 1qhx_A CPT, protein (chloramph 97.4 0.00013 4.5E-09 47.0 3.4 22 14-35 4-25 (178)
266 2bdt_A BH3686; alpha-beta prot 97.4 9.9E-05 3.4E-09 48.1 2.8 20 15-34 4-23 (189)
267 3t61_A Gluconokinase; PSI-biol 97.4 0.00011 3.7E-09 48.5 3.0 22 13-34 18-39 (202)
268 2j41_A Guanylate kinase; GMP, 97.4 0.00013 4.6E-09 48.1 3.3 22 14-35 7-28 (207)
269 2pcj_A ABC transporter, lipopr 97.3 0.00011 3.8E-09 49.4 2.9 23 15-38 32-54 (224)
270 3asz_A Uridine kinase; cytidin 97.3 0.00014 4.7E-09 48.3 3.3 24 12-35 5-28 (211)
271 3fb4_A Adenylate kinase; psych 97.3 0.00012 4.2E-09 48.7 3.0 21 14-34 1-21 (216)
272 2wwf_A Thymidilate kinase, put 97.3 0.00018 6.1E-09 47.7 3.8 23 12-34 9-31 (212)
273 4eun_A Thermoresistant glucoki 97.3 0.00012 4E-09 48.3 2.9 22 13-34 29-50 (200)
274 1ukz_A Uridylate kinase; trans 97.3 0.00022 7.6E-09 47.0 4.2 23 12-34 14-36 (203)
275 1kht_A Adenylate kinase; phosp 97.3 0.00013 4.6E-09 47.4 3.1 22 14-35 4-25 (192)
276 3dl0_A Adenylate kinase; phosp 97.3 0.00014 4.6E-09 48.5 3.1 21 14-34 1-21 (216)
277 1tev_A UMP-CMP kinase; ploop, 97.3 0.00015 5.3E-09 47.2 3.3 22 13-34 3-24 (196)
278 3vaa_A Shikimate kinase, SK; s 97.3 0.00014 4.7E-09 47.9 3.1 21 14-34 26-46 (199)
279 2i3b_A HCR-ntpase, human cance 97.3 0.00012 4.2E-09 47.9 2.7 21 15-35 3-23 (189)
280 2onk_A Molybdate/tungstate ABC 97.3 0.00014 4.6E-09 49.6 3.0 23 15-38 26-48 (240)
281 1y63_A LMAJ004144AAA protein; 97.3 0.0002 6.7E-09 46.6 3.6 24 12-35 9-32 (184)
282 3trf_A Shikimate kinase, SK; a 97.3 0.00016 5.3E-09 47.0 3.1 22 13-34 5-26 (185)
283 2rhm_A Putative kinase; P-loop 97.3 0.00018 6.2E-09 46.9 3.5 22 13-34 5-26 (193)
284 3cm0_A Adenylate kinase; ATP-b 97.3 0.0002 6.7E-09 46.5 3.6 23 12-34 3-25 (186)
285 1uf9_A TT1252 protein; P-loop, 97.3 0.00019 6.3E-09 47.2 3.5 27 9-35 4-30 (203)
286 3gfo_A Cobalt import ATP-bindi 97.3 0.00014 4.8E-09 50.5 2.9 23 15-38 36-58 (275)
287 1b0u_A Histidine permease; ABC 97.3 0.00015 5E-09 50.1 2.9 23 15-38 34-56 (262)
288 1aky_A Adenylate kinase; ATP:A 97.3 0.00017 5.9E-09 48.2 3.2 23 13-35 4-26 (220)
289 3tlx_A Adenylate kinase 2; str 97.3 0.00021 7.1E-09 48.7 3.7 24 12-35 28-51 (243)
290 1sgw_A Putative ABC transporte 97.3 0.00015 5.2E-09 48.4 2.9 23 15-38 37-59 (214)
291 2rcn_A Probable GTPase ENGC; Y 97.3 0.00014 4.9E-09 52.3 3.0 22 15-36 217-238 (358)
292 1np6_A Molybdopterin-guanine d 97.3 0.00016 5.5E-09 46.7 2.9 22 14-35 7-28 (174)
293 4g1u_C Hemin import ATP-bindin 97.3 0.00015 5.2E-09 50.1 2.9 23 15-38 39-61 (266)
294 2if2_A Dephospho-COA kinase; a 97.3 0.00017 5.7E-09 47.6 3.0 22 14-35 2-23 (204)
295 2cbz_A Multidrug resistance-as 97.3 0.00017 6E-09 48.9 3.1 23 15-38 33-55 (237)
296 2plr_A DTMP kinase, probable t 97.3 0.00022 7.4E-09 47.2 3.5 23 13-35 4-26 (213)
297 2eyu_A Twitching motility prot 97.3 0.00015 5.3E-09 49.9 2.9 22 14-35 26-47 (261)
298 3sr0_A Adenylate kinase; phosp 97.3 0.00018 6E-09 47.8 3.0 22 14-35 1-22 (206)
299 1nks_A Adenylate kinase; therm 97.3 0.00017 6E-09 46.9 3.0 21 15-35 3-23 (194)
300 1g6h_A High-affinity branched- 97.3 0.00016 5.4E-09 49.7 2.9 23 15-38 35-57 (257)
301 2yvu_A Probable adenylyl-sulfa 97.2 0.00029 9.8E-09 45.8 3.9 25 10-34 10-34 (186)
302 2ff7_A Alpha-hemolysin translo 97.2 0.00019 6.4E-09 49.1 3.1 23 15-38 37-59 (247)
303 1mv5_A LMRA, multidrug resista 97.2 0.00019 6.5E-09 48.9 3.2 23 15-38 30-52 (243)
304 1gvn_B Zeta; postsegregational 97.2 0.00025 8.5E-09 49.6 3.8 25 11-35 31-55 (287)
305 2pze_A Cystic fibrosis transme 97.2 0.00017 6E-09 48.7 2.9 23 15-38 36-58 (229)
306 2ehv_A Hypothetical protein PH 97.2 0.00017 5.8E-09 49.0 2.9 20 15-34 32-51 (251)
307 2jaq_A Deoxyguanosine kinase; 97.2 0.00019 6.6E-09 47.2 3.1 21 15-35 2-22 (205)
308 3uie_A Adenylyl-sulfate kinase 97.2 0.00017 5.9E-09 47.5 2.8 23 12-34 24-46 (200)
309 2v9p_A Replication protein E1; 97.2 0.00018 6.1E-09 50.7 3.0 21 14-34 127-147 (305)
310 3ec2_A DNA replication protein 97.2 0.00014 4.9E-09 47.0 2.4 22 13-34 38-59 (180)
311 2olj_A Amino acid ABC transpor 97.2 0.00018 6.1E-09 49.7 2.9 23 15-38 52-74 (263)
312 1cke_A CK, MSSA, protein (cyti 97.2 0.0002 6.8E-09 48.0 3.1 22 14-35 6-27 (227)
313 3iij_A Coilin-interacting nucl 97.2 0.00024 8.3E-09 45.9 3.4 23 12-34 10-32 (180)
314 1e4v_A Adenylate kinase; trans 97.2 0.0002 6.7E-09 47.8 3.0 22 14-35 1-22 (214)
315 1ji0_A ABC transporter; ATP bi 97.2 0.00019 6.4E-09 48.9 2.9 23 15-38 34-56 (240)
316 3b85_A Phosphate starvation-in 97.2 0.00015 5.1E-09 48.3 2.3 21 15-35 24-44 (208)
317 2qi9_C Vitamin B12 import ATP- 97.2 0.0002 6.7E-09 49.1 2.9 23 15-38 28-50 (249)
318 1vpl_A ABC transporter, ATP-bi 97.2 0.0002 6.7E-09 49.3 2.9 23 15-38 43-65 (256)
319 1jjv_A Dephospho-COA kinase; P 97.2 0.00024 8.3E-09 46.9 3.3 22 14-35 3-24 (206)
320 2ghi_A Transport protein; mult 97.2 0.00022 7.6E-09 49.1 3.1 23 15-38 48-70 (260)
321 2d2e_A SUFC protein; ABC-ATPas 97.2 0.00021 7E-09 49.0 2.9 20 15-34 31-50 (250)
322 2zu0_C Probable ATP-dependent 97.2 0.00022 7.5E-09 49.3 3.0 20 15-34 48-67 (267)
323 4a74_A DNA repair and recombin 97.2 0.0002 6.9E-09 48.0 2.8 21 15-35 27-47 (231)
324 1via_A Shikimate kinase; struc 97.2 0.00021 7.2E-09 46.0 2.7 20 15-34 6-25 (175)
325 2ixe_A Antigen peptide transpo 97.2 0.00022 7.4E-09 49.5 2.9 23 15-38 47-69 (271)
326 2ihy_A ABC transporter, ATP-bi 97.2 0.00024 8.4E-09 49.4 3.2 23 15-38 49-71 (279)
327 1odf_A YGR205W, hypothetical 3 97.2 0.00038 1.3E-08 48.7 4.1 25 10-34 28-52 (290)
328 2qt1_A Nicotinamide riboside k 97.2 0.00043 1.5E-08 45.8 4.2 24 12-35 20-43 (207)
329 2nq2_C Hypothetical ABC transp 97.2 0.00023 7.9E-09 48.8 2.9 23 15-38 33-55 (253)
330 1zd8_A GTP:AMP phosphotransfer 97.2 0.00026 9E-09 47.6 3.1 22 13-34 7-28 (227)
331 2f1r_A Molybdopterin-guanine d 97.2 0.00011 3.9E-09 47.3 1.2 20 15-34 4-23 (171)
332 2yv5_A YJEQ protein; hydrolase 97.2 0.00023 7.8E-09 50.1 2.9 21 14-34 166-186 (302)
333 3lnc_A Guanylate kinase, GMP k 97.1 0.00014 4.7E-09 49.1 1.7 20 15-34 29-48 (231)
334 2yz2_A Putative ABC transporte 97.1 0.00024 8.4E-09 49.1 2.9 23 15-38 35-57 (266)
335 1zak_A Adenylate kinase; ATP:A 97.1 0.00025 8.6E-09 47.5 2.9 21 14-34 6-26 (222)
336 2c95_A Adenylate kinase 1; tra 97.1 0.00032 1.1E-08 45.8 3.3 23 12-34 8-30 (196)
337 1u0l_A Probable GTPase ENGC; p 97.1 0.00023 7.9E-09 50.1 2.8 21 15-35 171-191 (301)
338 3aez_A Pantothenate kinase; tr 97.1 0.00034 1.2E-08 49.5 3.5 24 11-34 88-111 (312)
339 2vli_A Antibiotic resistance p 97.1 0.00019 6.6E-09 46.4 2.1 22 13-34 5-26 (183)
340 2v54_A DTMP kinase, thymidylat 97.1 0.00035 1.2E-08 46.0 3.4 23 13-35 4-26 (204)
341 2pt5_A Shikimate kinase, SK; a 97.1 0.00031 1.1E-08 44.7 3.1 21 15-35 2-22 (168)
342 1lw7_A Transcriptional regulat 97.1 0.00024 8.1E-09 51.4 2.7 22 13-34 170-191 (365)
343 2pjz_A Hypothetical protein ST 97.1 0.00032 1.1E-08 48.4 3.2 22 15-37 32-53 (263)
344 2f6r_A COA synthase, bifunctio 97.1 0.00067 2.3E-08 47.3 4.8 24 11-34 73-96 (281)
345 2jeo_A Uridine-cytidine kinase 97.1 0.00037 1.3E-08 47.5 3.4 23 13-35 25-47 (245)
346 4e22_A Cytidylate kinase; P-lo 97.1 0.00042 1.4E-08 47.4 3.7 23 12-34 26-48 (252)
347 2p5t_B PEZT; postsegregational 97.1 0.00036 1.2E-08 47.8 3.2 24 11-34 30-53 (253)
348 1xjc_A MOBB protein homolog; s 97.1 0.00035 1.2E-08 44.8 2.9 22 14-35 5-26 (169)
349 2xb4_A Adenylate kinase; ATP-b 97.1 0.00036 1.2E-08 46.8 3.1 20 15-34 2-21 (223)
350 1nn5_A Similar to deoxythymidy 97.1 0.0004 1.4E-08 46.1 3.4 23 12-34 8-30 (215)
351 1jbk_A CLPB protein; beta barr 97.1 0.00037 1.3E-08 45.1 3.1 23 13-35 43-65 (195)
352 3nh6_A ATP-binding cassette SU 97.1 0.00022 7.5E-09 50.3 2.0 23 15-38 82-104 (306)
353 1ak2_A Adenylate kinase isoenz 97.1 0.00042 1.4E-08 46.8 3.4 23 12-34 15-37 (233)
354 3tqc_A Pantothenate kinase; bi 97.1 0.0005 1.7E-08 48.8 3.8 24 11-34 90-113 (321)
355 1qf9_A UMP/CMP kinase, protein 97.0 0.00055 1.9E-08 44.5 3.8 22 14-35 7-28 (194)
356 2ze6_A Isopentenyl transferase 97.0 0.00035 1.2E-08 47.9 2.9 20 15-34 3-22 (253)
357 3fvq_A Fe(3+) IONS import ATP- 97.0 0.00034 1.2E-08 50.4 2.9 23 15-38 32-54 (359)
358 2kjq_A DNAA-related protein; s 97.0 0.00027 9.3E-09 44.4 2.0 22 14-35 37-58 (149)
359 2x8a_A Nuclear valosin-contain 97.0 0.00035 1.2E-08 48.5 2.8 19 16-34 47-65 (274)
360 2bbs_A Cystic fibrosis transme 97.0 0.0004 1.4E-08 48.6 3.1 23 15-38 66-88 (290)
361 3jvv_A Twitching mobility prot 97.0 0.00035 1.2E-08 50.3 2.8 21 15-35 125-145 (356)
362 1uj2_A Uridine-cytidine kinase 97.0 0.00047 1.6E-08 47.2 3.3 24 12-35 21-44 (252)
363 1rz3_A Hypothetical protein rb 97.0 0.00055 1.9E-08 45.1 3.6 23 12-34 21-43 (201)
364 3tui_C Methionine import ATP-b 97.0 0.00039 1.3E-08 50.1 3.0 23 15-38 56-78 (366)
365 3r20_A Cytidylate kinase; stru 97.0 0.00045 1.5E-08 46.7 3.1 24 11-34 7-30 (233)
366 3be4_A Adenylate kinase; malar 97.0 0.00043 1.5E-08 46.2 3.0 21 14-34 6-26 (217)
367 1rj9_A FTSY, signal recognitio 97.0 0.00057 2E-08 48.2 3.7 84 63-153 186-281 (304)
368 2bwj_A Adenylate kinase 5; pho 97.0 0.00045 1.6E-08 45.2 3.0 23 13-35 12-34 (199)
369 4ido_A Atlastin-1; GTPase, GTP 97.0 0.0019 6.4E-08 47.9 6.4 64 11-74 65-152 (457)
370 1z47_A CYSA, putative ABC-tran 97.0 0.00043 1.5E-08 49.8 2.9 23 15-38 43-65 (355)
371 1ixz_A ATP-dependent metallopr 97.0 0.00043 1.5E-08 47.3 2.9 19 16-34 52-70 (254)
372 3b9q_A Chloroplast SRP recepto 97.0 0.00043 1.5E-08 48.7 2.9 24 12-35 99-122 (302)
373 2pbr_A DTMP kinase, thymidylat 97.0 0.0005 1.7E-08 44.8 3.0 21 15-35 2-22 (195)
374 3rlf_A Maltose/maltodextrin im 97.0 0.00045 1.5E-08 50.1 3.0 23 15-38 31-53 (381)
375 2pt7_A CAG-ALFA; ATPase, prote 97.0 0.00045 1.6E-08 49.3 3.0 20 15-34 173-192 (330)
376 2pez_A Bifunctional 3'-phospho 97.0 0.00063 2.2E-08 43.9 3.4 24 12-35 4-27 (179)
377 1e6c_A Shikimate kinase; phosp 97.0 0.0005 1.7E-08 44.0 2.9 21 15-35 4-24 (173)
378 2gza_A Type IV secretion syste 96.9 0.00043 1.5E-08 50.0 2.8 21 15-35 177-197 (361)
379 2yyz_A Sugar ABC transporter, 96.9 0.00046 1.6E-08 49.7 2.9 23 15-38 31-53 (359)
380 2iyv_A Shikimate kinase, SK; t 96.9 0.00049 1.7E-08 44.6 2.8 21 15-35 4-24 (184)
381 2it1_A 362AA long hypothetical 96.9 0.00048 1.6E-08 49.7 3.0 23 15-38 31-53 (362)
382 1sq5_A Pantothenate kinase; P- 96.9 0.0007 2.4E-08 47.8 3.8 24 12-35 79-102 (308)
383 1gtv_A TMK, thymidylate kinase 96.9 0.00017 5.9E-09 47.9 0.6 20 15-34 2-21 (214)
384 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.00063 2.2E-08 46.8 3.5 22 14-35 5-26 (260)
385 2z0h_A DTMP kinase, thymidylat 96.9 0.00049 1.7E-08 44.9 2.8 21 15-35 2-22 (197)
386 3umf_A Adenylate kinase; rossm 96.9 0.00053 1.8E-08 45.9 2.9 20 16-35 32-51 (217)
387 2ewv_A Twitching motility prot 96.9 0.0005 1.7E-08 49.9 3.0 22 14-35 137-158 (372)
388 2w0m_A SSO2452; RECA, SSPF, un 96.9 0.00051 1.8E-08 46.0 2.9 21 15-35 25-45 (235)
389 1zuh_A Shikimate kinase; alpha 96.9 0.00061 2.1E-08 43.5 3.1 21 15-35 9-29 (168)
390 1vht_A Dephospho-COA kinase; s 96.9 0.00072 2.4E-08 45.1 3.5 23 13-35 4-26 (218)
391 1v43_A Sugar-binding transport 96.9 0.00053 1.8E-08 49.7 3.0 20 15-34 39-58 (372)
392 1g29_1 MALK, maltose transport 96.9 0.00052 1.8E-08 49.7 2.9 23 15-38 31-53 (372)
393 2p65_A Hypothetical protein PF 96.9 0.00045 1.5E-08 44.5 2.2 23 13-35 43-65 (187)
394 2oap_1 GSPE-2, type II secreti 96.8 0.00058 2E-08 51.6 2.9 21 15-35 262-282 (511)
395 1p9r_A General secretion pathw 96.8 0.00058 2E-08 50.3 2.8 21 15-35 169-189 (418)
396 1in4_A RUVB, holliday junction 96.8 0.00059 2E-08 48.7 2.8 21 15-35 53-73 (334)
397 1iy2_A ATP-dependent metallopr 96.8 0.00064 2.2E-08 47.1 2.9 19 16-34 76-94 (278)
398 3bos_A Putative DNA replicatio 96.8 0.00072 2.5E-08 45.4 3.0 23 13-35 52-74 (242)
399 3kta_A Chromosome segregation 96.8 0.00071 2.4E-08 43.7 2.9 20 15-34 28-47 (182)
400 2vp4_A Deoxynucleoside kinase; 96.8 0.00094 3.2E-08 45.0 3.6 25 11-35 18-42 (230)
401 1cr0_A DNA primase/helicase; R 96.8 0.00063 2.2E-08 47.6 2.8 21 15-35 37-57 (296)
402 3d31_A Sulfate/molybdate ABC t 96.8 0.00044 1.5E-08 49.6 1.9 23 15-38 28-50 (348)
403 2grj_A Dephospho-COA kinase; T 96.8 0.00092 3.1E-08 43.9 3.3 24 12-35 11-34 (192)
404 3nwj_A ATSK2; P loop, shikimat 96.8 0.00066 2.2E-08 46.5 2.7 21 14-34 49-69 (250)
405 3gd7_A Fusion complex of cysti 96.8 0.00068 2.3E-08 49.4 2.9 20 15-34 49-68 (390)
406 1lv7_A FTSH; alpha/beta domain 96.8 0.00089 3.1E-08 45.8 3.4 21 14-34 46-66 (257)
407 2cvh_A DNA repair and recombin 96.8 0.00075 2.6E-08 44.8 2.9 21 15-35 22-42 (220)
408 2og2_A Putative signal recogni 96.8 0.00071 2.4E-08 48.8 2.9 24 12-35 156-179 (359)
409 2w58_A DNAI, primosome compone 96.8 0.00089 3E-08 44.0 3.0 22 14-35 55-76 (202)
410 1n0w_A DNA repair protein RAD5 96.8 0.00084 2.9E-08 45.3 2.9 22 15-36 26-47 (243)
411 1nij_A Hypothetical protein YJ 96.8 0.00061 2.1E-08 48.3 2.3 22 15-36 6-27 (318)
412 1m7g_A Adenylylsulfate kinase; 96.8 0.0011 3.8E-08 44.0 3.5 23 12-34 24-46 (211)
413 2yhs_A FTSY, cell division pro 96.7 0.00079 2.7E-08 50.4 2.9 92 62-162 376-479 (503)
414 4eaq_A DTMP kinase, thymidylat 96.7 0.0014 4.7E-08 44.2 3.8 23 12-34 25-47 (229)
415 1ltq_A Polynucleotide kinase; 96.7 0.0011 3.9E-08 46.4 3.5 22 14-35 3-24 (301)
416 3t15_A Ribulose bisphosphate c 96.7 0.0013 4.4E-08 46.1 3.7 23 12-34 35-57 (293)
417 3syl_A Protein CBBX; photosynt 96.7 0.0013 4.4E-08 46.2 3.7 24 11-34 65-88 (309)
418 1oxx_K GLCV, glucose, ABC tran 96.7 0.00043 1.5E-08 49.8 1.2 23 15-38 33-55 (353)
419 3zvl_A Bifunctional polynucleo 96.7 0.0018 6E-08 47.7 4.4 24 12-35 257-280 (416)
420 2obl_A ESCN; ATPase, hydrolase 96.7 0.001 3.6E-08 47.7 3.0 22 15-36 73-94 (347)
421 3crm_A TRNA delta(2)-isopenten 96.7 0.0013 4.6E-08 46.6 3.5 22 14-35 6-27 (323)
422 2npi_A Protein CLP1; CLP1-PCF1 96.7 0.00084 2.9E-08 50.0 2.6 21 15-35 140-160 (460)
423 3n70_A Transport activator; si 96.7 0.0012 4.1E-08 41.1 2.9 23 13-35 24-46 (145)
424 1njg_A DNA polymerase III subu 96.6 0.0011 3.8E-08 44.4 2.8 21 15-35 47-67 (250)
425 4fcw_A Chaperone protein CLPB; 96.6 0.0018 6E-08 45.5 3.9 24 12-35 46-69 (311)
426 1nlf_A Regulatory protein REPA 96.6 0.0012 3.9E-08 45.9 2.8 21 15-35 32-52 (279)
427 2qz4_A Paraplegin; AAA+, SPG7, 96.6 0.0015 5.1E-08 44.6 3.4 23 13-35 39-61 (262)
428 3h4m_A Proteasome-activating n 96.6 0.0014 4.7E-08 45.5 3.2 23 13-35 51-73 (285)
429 2chg_A Replication factor C sm 96.6 0.0012 4.1E-08 43.7 2.8 20 16-35 41-60 (226)
430 1f2t_A RAD50 ABC-ATPase; DNA d 96.6 0.0013 4.3E-08 41.3 2.7 19 16-34 26-44 (149)
431 1q3t_A Cytidylate kinase; nucl 96.6 0.0016 5.4E-08 44.0 3.3 26 10-35 13-38 (236)
432 1d2n_A N-ethylmaleimide-sensit 96.6 0.0021 7E-08 44.4 4.0 25 11-35 62-86 (272)
433 1p5z_B DCK, deoxycytidine kina 96.6 0.0013 4.3E-08 45.3 2.9 24 11-34 22-45 (263)
434 3b9p_A CG5977-PA, isoform A; A 96.6 0.0015 5E-08 45.7 3.2 24 12-35 53-76 (297)
435 1tue_A Replication protein E1; 96.6 0.0011 3.9E-08 43.8 2.4 21 14-34 59-79 (212)
436 2qmh_A HPR kinase/phosphorylas 96.6 0.0014 4.8E-08 43.1 2.8 25 12-36 33-57 (205)
437 2dr3_A UPF0273 protein PH0284; 96.6 0.0014 4.7E-08 44.3 2.9 21 15-35 25-45 (247)
438 3gmt_A Adenylate kinase; ssgci 96.5 0.0016 5.6E-08 43.9 3.1 24 12-35 7-30 (230)
439 3cf0_A Transitional endoplasmi 96.5 0.0017 5.9E-08 45.6 3.2 23 13-35 49-71 (301)
440 1a7j_A Phosphoribulokinase; tr 96.5 0.00088 3E-08 46.9 1.7 24 12-35 4-27 (290)
441 2dpy_A FLII, flagellum-specifi 96.5 0.0016 5.4E-08 48.3 3.0 22 15-36 159-180 (438)
442 1yqt_A RNAse L inhibitor; ATP- 96.5 0.0017 5.7E-08 49.5 3.2 23 15-38 49-71 (538)
443 3co5_A Putative two-component 96.5 0.0013 4.3E-08 40.9 2.1 22 13-34 27-48 (143)
444 3b60_A Lipid A export ATP-bind 96.5 0.0016 5.6E-08 50.0 3.1 23 15-38 371-393 (582)
445 3euj_A Chromosome partition pr 96.5 0.0016 5.6E-08 48.7 2.9 22 14-35 30-51 (483)
446 3ozx_A RNAse L inhibitor; ATP 96.4 0.0017 5.8E-08 49.4 2.9 21 14-34 26-46 (538)
447 1azs_C GS-alpha; complex (lyas 96.4 0.0026 9E-08 46.5 3.8 23 11-33 38-60 (402)
448 1l8q_A Chromosomal replication 96.4 0.0017 5.7E-08 46.0 2.8 22 14-35 38-59 (324)
449 2px0_A Flagellar biosynthesis 96.4 0.0018 6E-08 45.5 2.8 86 61-153 182-273 (296)
450 3b5x_A Lipid A export ATP-bind 96.4 0.0019 6.5E-08 49.6 3.1 23 15-38 371-393 (582)
451 1svm_A Large T antigen; AAA+ f 96.4 0.0023 7.9E-08 46.4 3.3 21 14-34 170-190 (377)
452 2h92_A Cytidylate kinase; ross 96.4 0.002 6.9E-08 42.8 2.8 23 13-35 3-25 (219)
453 3ake_A Cytidylate kinase; CMP 96.4 0.0023 7.9E-08 42.1 3.0 21 15-35 4-24 (208)
454 1pzn_A RAD51, DNA repair and r 96.4 0.002 6.7E-08 46.4 2.8 22 15-36 133-154 (349)
455 2qby_A CDC6 homolog 1, cell di 96.4 0.0019 6.6E-08 46.5 2.8 23 13-35 45-67 (386)
456 4b4t_M 26S protease regulatory 96.4 0.0025 8.5E-08 47.1 3.4 23 12-34 214-236 (434)
457 1xwi_A SKD1 protein; VPS4B, AA 96.4 0.0024 8.3E-08 45.3 3.2 24 12-35 44-67 (322)
458 1ofh_A ATP-dependent HSL prote 96.3 0.0023 7.8E-08 44.8 3.0 23 13-35 50-72 (310)
459 3eie_A Vacuolar protein sortin 96.3 0.0025 8.7E-08 45.1 3.3 23 12-34 50-72 (322)
460 4a82_A Cystic fibrosis transme 96.3 0.0022 7.5E-08 49.3 3.1 23 15-38 369-391 (578)
461 1vma_A Cell division protein F 96.3 0.0022 7.4E-08 45.2 2.9 92 62-162 187-290 (306)
462 3tqf_A HPR(Ser) kinase; transf 96.3 0.0027 9.4E-08 40.8 3.0 24 13-36 16-39 (181)
463 3j16_B RLI1P; ribosome recycli 96.3 0.0021 7.3E-08 49.6 3.0 20 15-34 105-124 (608)
464 2yl4_A ATP-binding cassette SU 96.3 0.0017 5.8E-08 50.0 2.5 23 15-38 372-394 (595)
465 1sxj_E Activator 1 40 kDa subu 96.3 0.0019 6.6E-08 46.2 2.6 20 16-35 39-58 (354)
466 3qf4_B Uncharacterized ABC tra 96.3 0.0019 6.4E-08 49.8 2.6 23 15-38 383-405 (598)
467 3qf7_A RAD50; ABC-ATPase, ATPa 96.3 0.0023 7.8E-08 46.3 2.9 19 16-34 26-44 (365)
468 4b4t_K 26S protease regulatory 96.3 0.0028 9.6E-08 46.7 3.4 22 13-34 206-227 (428)
469 1fnn_A CDC6P, cell division co 96.3 0.0026 8.8E-08 46.0 3.1 21 15-35 46-66 (389)
470 3d3q_A TRNA delta(2)-isopenten 96.3 0.0025 8.5E-08 45.5 2.9 22 14-35 8-29 (340)
471 4b4t_L 26S protease subunit RP 96.3 0.003 1E-07 46.7 3.4 23 12-34 214-236 (437)
472 3qf4_A ABC transporter, ATP-bi 96.3 0.0021 7.3E-08 49.4 2.6 23 15-38 371-393 (587)
473 1c9k_A COBU, adenosylcobinamid 96.3 0.0029 1E-07 41.0 2.9 21 16-36 2-22 (180)
474 1sxj_C Activator 1 40 kDa subu 96.2 0.0024 8.3E-08 45.6 2.8 20 16-35 49-68 (340)
475 1tf7_A KAIC; homohexamer, hexa 96.2 0.0024 8.3E-08 48.4 2.8 19 15-33 41-59 (525)
476 3bk7_A ABC transporter ATP-bin 96.2 0.0036 1.2E-07 48.4 3.7 23 15-38 119-141 (607)
477 3a8t_A Adenylate isopentenyltr 96.2 0.0029 9.9E-08 45.1 2.9 21 15-35 42-62 (339)
478 3ozx_A RNAse L inhibitor; ATP 96.2 0.0027 9.2E-08 48.3 2.9 23 15-38 296-318 (538)
479 2axn_A 6-phosphofructo-2-kinas 96.2 0.0049 1.7E-07 46.7 4.2 24 11-34 33-56 (520)
480 1yqt_A RNAse L inhibitor; ATP- 96.2 0.0032 1.1E-07 47.9 3.2 21 15-35 314-334 (538)
481 3hws_A ATP-dependent CLP prote 96.2 0.0041 1.4E-07 44.8 3.6 23 12-34 50-72 (363)
482 2ocp_A DGK, deoxyguanosine kin 96.2 0.004 1.4E-07 42.2 3.3 21 14-34 3-23 (241)
483 3uk6_A RUVB-like 2; hexameric 96.2 0.0032 1.1E-07 45.3 3.0 22 14-35 71-92 (368)
484 3pxg_A Negative regulator of g 96.2 0.0029 1E-07 47.3 2.9 23 13-35 201-223 (468)
485 3foz_A TRNA delta(2)-isopenten 96.1 0.0047 1.6E-07 43.5 3.7 22 14-35 11-32 (316)
486 2ga8_A Hypothetical 39.9 kDa p 96.1 0.0035 1.2E-07 45.0 3.1 22 13-34 24-45 (359)
487 3bk7_A ABC transporter ATP-bin 96.1 0.0031 1.1E-07 48.7 3.0 21 15-35 384-404 (607)
488 4b4t_J 26S protease regulatory 96.1 0.0034 1.2E-07 45.9 3.0 23 12-34 181-203 (405)
489 3lda_A DNA repair protein RAD5 96.1 0.0031 1.1E-07 46.1 2.8 20 15-34 180-199 (400)
490 1um8_A ATP-dependent CLP prote 96.1 0.0038 1.3E-07 45.2 3.3 24 12-35 71-94 (376)
491 1sxj_D Activator 1 41 kDa subu 96.1 0.0032 1.1E-07 44.9 2.8 20 16-35 61-80 (353)
492 2iw3_A Elongation factor 3A; a 96.1 0.0036 1.2E-07 50.8 3.3 24 15-38 463-486 (986)
493 2qgz_A Helicase loader, putati 96.1 0.0037 1.3E-07 44.1 3.0 23 13-35 152-174 (308)
494 2qp9_X Vacuolar protein sortin 96.1 0.0036 1.2E-07 45.1 3.0 24 12-35 83-106 (355)
495 2qen_A Walker-type ATPase; unk 96.1 0.0034 1.2E-07 44.6 2.9 21 15-35 33-53 (350)
496 2v1u_A Cell division control p 96.1 0.0028 9.5E-08 45.7 2.3 23 13-35 44-66 (387)
497 2r62_A Cell division protease 96.1 0.0013 4.6E-08 45.2 0.6 21 15-35 46-66 (268)
498 2fna_A Conserved hypothetical 96.1 0.0034 1.2E-07 44.7 2.8 21 15-35 32-52 (357)
499 3d8b_A Fidgetin-like protein 1 96.0 0.0043 1.5E-07 44.7 3.2 23 12-34 116-138 (357)
500 3exa_A TRNA delta(2)-isopenten 96.0 0.0051 1.7E-07 43.4 3.5 22 14-35 4-25 (322)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=2.6e-44 Score=242.78 Aligned_cols=173 Identities=28% Similarity=0.516 Sum_probs=138.7
Q ss_pred CCCCCCCCCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccc
Q 030504 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (176)
Q Consensus 1 ~~~~~~~~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 80 (176)
|+.+..-..+++.+||+|+|.+|||||||+++|..+.+...+.||.|.++.......++..+.+.+|||+|++++..++.
T Consensus 1 ms~~~~~~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~ 80 (216)
T 4dkx_A 1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIP 80 (216)
T ss_dssp ------------CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHH
T ss_pred CCCCCCCCCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHH
Confidence 55555555667889999999999999999999999999999999999999988888999999999999999999999999
Q ss_pred cccccccEEEEEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc--cCHHHHHHHHHcCCeEEEeccCCC
Q 030504 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSN 157 (176)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~S~~~~ 157 (176)
.+++.++++++|||++++.+|+.+..|+..+.... ++.|+++|+||+|+.... ...+...++++.++.|++|||++|
T Consensus 81 ~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg 160 (216)
T 4dkx_A 81 SYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAG 160 (216)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTT
T ss_pred HHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCC
Confidence 99999999999999999999999999999887654 689999999999998643 334567999999999999999999
Q ss_pred CChHHHHHHHHHHHhc
Q 030504 158 YNFEKPFLYLARKLAG 173 (176)
Q Consensus 158 ~~v~~~~~~l~~~i~~ 173 (176)
.||+++|++|++.+.+
T Consensus 161 ~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 161 YNVKQLFRRVAAALPG 176 (216)
T ss_dssp BSHHHHHHHHHHHC--
T ss_pred cCHHHHHHHHHHHHHh
Confidence 9999999999998764
No 2
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=1.1e-37 Score=206.01 Aligned_cols=171 Identities=30% Similarity=0.495 Sum_probs=145.8
Q ss_pred CCCCCCCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccc
Q 030504 3 LPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGY 82 (176)
Q Consensus 3 ~~~~~~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~ 82 (176)
++..++...+.+||+++|.+|+|||||++++..+.+...+.++.+..+ ......++..+.+.+|||||++.+...+..+
T Consensus 8 ~~~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~ 86 (183)
T 3kkq_A 8 TSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQY 86 (183)
T ss_dssp ------CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHH
T ss_pred cccCCccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHH
Confidence 334456667899999999999999999999999988888888887666 5666778888999999999999999999999
Q ss_pred cccccEEEEEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCcc--ccCHHHHHHHHHcCCeEEEeccC-CC
Q 030504 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNR--QVKAKQVTFHRKKNLQYYEISAK-SN 157 (176)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~S~~-~~ 157 (176)
++.+|++++|||++++.+++.+..|+..+... ..+.|+++|+||+|+... ....+...+++..+++++++||+ ++
T Consensus 87 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (183)
T 3kkq_A 87 MRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPP 166 (183)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSC
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCC
Confidence 99999999999999999999999998888664 358899999999999753 23345668888899999999999 99
Q ss_pred CChHHHHHHHHHHHhcC
Q 030504 158 YNFEKPFLYLARKLAGS 174 (176)
Q Consensus 158 ~~v~~~~~~l~~~i~~~ 174 (176)
.|++++|++|++.+.++
T Consensus 167 ~~v~~l~~~l~~~i~~q 183 (183)
T 3kkq_A 167 LNVDKTFHDLVRVIRQQ 183 (183)
T ss_dssp BSHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhhC
Confidence 99999999999988753
No 3
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=100.00 E-value=3.1e-38 Score=214.55 Aligned_cols=169 Identities=80% Similarity=1.313 Sum_probs=156.0
Q ss_pred CCCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccc
Q 030504 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (176)
Q Consensus 7 ~~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 86 (176)
.......+||+++|.+|||||||+++|+.+.+...+.++.|.+........+...+.+.+|||||++.+...+..+++++
T Consensus 9 ~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 88 (221)
T 3gj0_A 9 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQA 88 (221)
T ss_dssp TTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred CCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcC
Confidence 44556789999999999999999999999988888899999999999888898999999999999999999999999999
Q ss_pred cEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChHHHHHH
Q 030504 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 166 (176)
|++++|||++++.+++.+..|+..+....++.|+++|+||+|+.++....+...+++..+++++++||++|.|++++|.+
T Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 168 (221)
T 3gj0_A 89 QCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLW 168 (221)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGGGTBTTTHHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999999998887899999999999998777666777888899999999999999999999999
Q ss_pred HHHHHhcCC
Q 030504 167 LARKLAGST 175 (176)
Q Consensus 167 l~~~i~~~~ 175 (176)
|++.+.+.+
T Consensus 169 l~~~l~~~~ 177 (221)
T 3gj0_A 169 LARKLIGDP 177 (221)
T ss_dssp HHHHHHTCT
T ss_pred HHHHHHhCc
Confidence 999987765
No 4
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=2.6e-37 Score=203.33 Aligned_cols=168 Identities=32% Similarity=0.512 Sum_probs=146.5
Q ss_pred CCCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccc
Q 030504 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (176)
Q Consensus 7 ~~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 86 (176)
+......+||+++|.+|+|||||++++..+.+...+.++.+.+........++..+.+.+|||||++.+...+..+++.+
T Consensus 9 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 88 (179)
T 1z0f_A 9 PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGA 88 (179)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTC
T ss_pred ccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccC
Confidence 34445689999999999999999999999998888888888888888888888889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHH
Q 030504 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
|++++|+|++++.+++.+..|+..+.... ++.|+++|+||+|+.... . ..+...+++..+++++++||+++.|++++
T Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 168 (179)
T 1z0f_A 89 AGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDA 168 (179)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred CEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999999988887664 689999999999997533 2 34566888889999999999999999999
Q ss_pred HHHHHHHHhcC
Q 030504 164 FLYLARKLAGS 174 (176)
Q Consensus 164 ~~~l~~~i~~~ 174 (176)
|+++++.+.++
T Consensus 169 ~~~l~~~i~~~ 179 (179)
T 1z0f_A 169 FLEAAKKIYQN 179 (179)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHhhC
Confidence 99999988753
No 5
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=1.6e-37 Score=210.05 Aligned_cols=167 Identities=20% Similarity=0.316 Sum_probs=142.1
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccccccccccc
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 87 (176)
......+||+++|.+|||||||+++|..+.+...+.++.+.++ ......++..+.+.+|||+|++.+...+..+++.+|
T Consensus 22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 100 (214)
T 3q3j_B 22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD 100 (214)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCe
Confidence 3456789999999999999999999999999888889988766 445667778899999999999999999999999999
Q ss_pred EEEEEEeCCChhhhhh-HHHHHHHHhhhcCCCCEEEEEeCCCCCcc--------------ccCHHHHHHHHHcCC-eEEE
Q 030504 88 CAIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKNR--------------QVKAKQVTFHRKKNL-QYYE 151 (176)
Q Consensus 88 ~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~p~liv~nK~Dl~~~--------------~~~~~~~~~~~~~~~-~~~~ 151 (176)
++|+|||++++.+++. +..|+..+....++.|+++|+||+|+... ....+...+++..++ ++++
T Consensus 101 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 180 (214)
T 3q3j_B 101 AVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLE 180 (214)
T ss_dssp EEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEE
Confidence 9999999999999998 68899998888789999999999999752 233456688899999 9999
Q ss_pred eccCCCCC-hHHHHHHHHHHHhcCC
Q 030504 152 ISAKSNYN-FEKPFLYLARKLAGST 175 (176)
Q Consensus 152 ~S~~~~~~-v~~~~~~l~~~i~~~~ 175 (176)
|||++|.| ++++|+++++.+.++.
T Consensus 181 ~SA~~g~g~v~~lf~~l~~~~~~~~ 205 (214)
T 3q3j_B 181 GSAFTSEKSIHSIFRTASMLCLNKP 205 (214)
T ss_dssp CCTTTCHHHHHHHHHHHHHHHHC--
T ss_pred eccCCCcccHHHHHHHHHHHHhccC
Confidence 99999998 9999999999887654
No 6
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=4.9e-37 Score=204.31 Aligned_cols=167 Identities=31% Similarity=0.539 Sum_probs=142.8
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccccccccccc
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 87 (176)
+.....+||+++|.+|||||||++++..+.+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 95 (191)
T 2a5j_A 16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAA 95 (191)
T ss_dssp CTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCS
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCC
Confidence 34457899999999999999999999999988777888887777777788888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHH
Q 030504 88 CAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~ 164 (176)
++++|||++++.+++.+..|+..+.... ++.|+++|+||+|+.... . ..+...+++..++.++++||+++.|++++|
T Consensus 96 ~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 175 (191)
T 2a5j_A 96 GALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAF 175 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999999999999998887653 589999999999997532 2 345668888899999999999999999999
Q ss_pred HHHHHHHhcC
Q 030504 165 LYLARKLAGS 174 (176)
Q Consensus 165 ~~l~~~i~~~ 174 (176)
++|++.+.++
T Consensus 176 ~~l~~~i~~~ 185 (191)
T 2a5j_A 176 INTAKEIYRK 185 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987653
No 7
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=1.7e-37 Score=208.07 Aligned_cols=164 Identities=35% Similarity=0.549 Sum_probs=137.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
...+||+++|.+|||||||++++..+.+...+.++.+.++....+..++..+.+.+|||||++++...+..+++.+|++|
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 45799999999999999999999999988788888887777777778888899999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCcc-cc-CHHHHHHHHHcCC-eEEEeccCCCCChHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~-~~-~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~~~ 166 (176)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+... .. ..+...+++..++ .++++||+++.|++++|++
T Consensus 107 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 186 (201)
T 2hup_A 107 LAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLR 186 (201)
T ss_dssp EEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999998887765 68999999999999763 22 3456688888999 9999999999999999999
Q ss_pred HHHHHhcC
Q 030504 167 LARKLAGS 174 (176)
Q Consensus 167 l~~~i~~~ 174 (176)
|++.+.++
T Consensus 187 l~~~i~~~ 194 (201)
T 2hup_A 187 VATELIMR 194 (201)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99988764
No 8
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=1.3e-36 Score=202.87 Aligned_cols=165 Identities=30% Similarity=0.552 Sum_probs=148.1
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEE
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (176)
....+||+++|.+|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+|||||++.+...+..+++.+|++
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 92 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 92 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEE
Confidence 34679999999999999999999999998888888988888888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccccC--HHHHHHHHHcCCeEEEeccCCCCChHHHHHH
Q 030504 90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVK--AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 166 (176)
++|||++++.+++.+..|+..+.... .+.|+++|+||+|+...... .+...++...+++++++||+++.|++++|++
T Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 172 (196)
T 3tkl_A 93 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMT 172 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999998887764 47899999999999754332 4566888899999999999999999999999
Q ss_pred HHHHHhcC
Q 030504 167 LARKLAGS 174 (176)
Q Consensus 167 l~~~i~~~ 174 (176)
|++.+.++
T Consensus 173 l~~~i~~~ 180 (196)
T 3tkl_A 173 MAAEIKKR 180 (196)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988754
No 9
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=1.5e-36 Score=199.43 Aligned_cols=167 Identities=32% Similarity=0.630 Sum_probs=142.4
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEE
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (176)
....+||+++|.+|+|||||+++++.+.+...+.++.+.+.....+..++..+.+.+|||||++.+...+..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 44679999999999999999999999998888888888888888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhhhhHHHHHHHHhhhc-----CCCCEEEEEeCCCCCccccC-HHHHHHHH-HcCCeEEEeccCCCCChHH
Q 030504 90 IIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVK-AKQVTFHR-KKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~liv~nK~Dl~~~~~~-~~~~~~~~-~~~~~~~~~S~~~~~~v~~ 162 (176)
++|||++++.+++.+..|+..+.... .+.|+++|+||+|+..+... .+...+++ ..+++++++||++|.|+++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 163 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAA 163 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHH
Confidence 99999999999999999988876543 57899999999999754433 34556666 5678999999999999999
Q ss_pred HHHHHHHHHhcCCC
Q 030504 163 PFLYLARKLAGSTD 176 (176)
Q Consensus 163 ~~~~l~~~i~~~~~ 176 (176)
+|+++++.+.++++
T Consensus 164 l~~~l~~~~~~~~d 177 (177)
T 1wms_A 164 AFEEAVRRVLATED 177 (177)
T ss_dssp HHHHHHHHHHTC--
T ss_pred HHHHHHHHHHhhcC
Confidence 99999999988764
No 10
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.5e-36 Score=199.97 Aligned_cols=165 Identities=32% Similarity=0.553 Sum_probs=145.8
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEE
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (176)
....+||+++|.+|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+|||||++.+...+..+++.+|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 85 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 85 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence 34679999999999999999999998888878888888888888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc--CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
++|||++++.+++.+..|+..+....++.|+++|+||+|+..... ..+...++...+++++++||++|.|++++|+++
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 165 (181)
T 3tw8_B 86 IVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCI 165 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 999999999999999999999988878899999999999976443 245668888889999999999999999999999
Q ss_pred HHHHhcC
Q 030504 168 ARKLAGS 174 (176)
Q Consensus 168 ~~~i~~~ 174 (176)
.+.+.+.
T Consensus 166 ~~~~~~~ 172 (181)
T 3tw8_B 166 TELVLRA 172 (181)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987653
No 11
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=7.7e-37 Score=199.43 Aligned_cols=163 Identities=33% Similarity=0.588 Sum_probs=145.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
.+.+||+++|.+|+|||||++++..+.+...+.++.+.++.......++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 46799999999999999999999999988888888888888888888888999999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhh-cCCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
+|||++++.+++.+..|+..+... .++.|+++|+||+|+.... . ..+...+++..+++++++||++|.|++++|++|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i 163 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 999999999999999998888765 3689999999999997533 2 245667888899999999999999999999999
Q ss_pred HHHHhc
Q 030504 168 ARKLAG 173 (176)
Q Consensus 168 ~~~i~~ 173 (176)
++.+.+
T Consensus 164 ~~~~~~ 169 (170)
T 1r2q_A 164 AKKLPK 169 (170)
T ss_dssp HHTSCC
T ss_pred HHHHhh
Confidence 988764
No 12
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=2.4e-36 Score=200.66 Aligned_cols=163 Identities=25% Similarity=0.532 Sum_probs=145.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
..+||+++|.+|+|||||++++..+.+...+.++.+.++.......++..+.+.+|||||++.+...+..++..+|++++
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 100 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLL 100 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEE
Confidence 46899999999999999999999999888888888888887777888888999999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
|||++++.+++.+..|+..+.... ++.|+++|+||+|+.... . ..+...+++..+++++++||++|.|++++|++|+
T Consensus 101 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 180 (189)
T 2gf9_A 101 MYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLV 180 (189)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999998887764 589999999999997643 2 3456688888999999999999999999999999
Q ss_pred HHHhcC
Q 030504 169 RKLAGS 174 (176)
Q Consensus 169 ~~i~~~ 174 (176)
+.+.++
T Consensus 181 ~~i~~~ 186 (189)
T 2gf9_A 181 DVICEK 186 (189)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988654
No 13
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=9.5e-37 Score=198.71 Aligned_cols=164 Identities=30% Similarity=0.598 Sum_probs=145.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
...+||+++|.+|+|||||++++..+.+...+.++.+.+........++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 35799999999999999999999999888888888887777777778888899999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
+|+|++++.+++.+..|+..+....++.|+++|+||+|+.... . ..+...+++..+++++++||+++.|++++|++|.
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 162 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLA 162 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Confidence 9999999999999999998887766789999999999997533 2 3456678888899999999999999999999999
Q ss_pred HHHhcC
Q 030504 169 RKLAGS 174 (176)
Q Consensus 169 ~~i~~~ 174 (176)
+.+.++
T Consensus 163 ~~~~~~ 168 (168)
T 1z2a_A 163 EKHLQK 168 (168)
T ss_dssp HHHHC-
T ss_pred HHHhhC
Confidence 988753
No 14
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=1.7e-36 Score=202.08 Aligned_cols=166 Identities=25% Similarity=0.398 Sum_probs=144.5
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
.....+||+++|.+|+|||||++++..+.+...+.++.+.++.. ....++..+.+.+|||||++.+...+..+++++|+
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 97 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV 97 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence 34567999999999999999999999999888888888766554 56677888999999999999999999999999999
Q ss_pred EEEEEeCCChhhhhhH-HHHHHHHhhhcCCCCEEEEEeCCCCCcc----ccCHHHHHHHHHcCCe-EEEeccCCCCChHH
Q 030504 89 AIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR----QVKAKQVTFHRKKNLQ-YYEISAKSNYNFEK 162 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~liv~nK~Dl~~~----~~~~~~~~~~~~~~~~-~~~~S~~~~~~v~~ 162 (176)
+++|||++++.+++.+ ..|+..+....++.|+++|+||+|+... ....+...+++..++. ++++||++|.|+++
T Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 177 (194)
T 3reg_A 98 VLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNE 177 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHH
Confidence 9999999999999997 6788888877788999999999999742 2334566888888988 99999999999999
Q ss_pred HHHHHHHHHhcCC
Q 030504 163 PFLYLARKLAGST 175 (176)
Q Consensus 163 ~~~~l~~~i~~~~ 175 (176)
+|+++++.+.+++
T Consensus 178 l~~~l~~~i~~~~ 190 (194)
T 3reg_A 178 VFEKSVDCIFSNK 190 (194)
T ss_dssp HHHHHHHHHHCSC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999987764
No 15
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=7.6e-37 Score=199.45 Aligned_cols=163 Identities=33% Similarity=0.588 Sum_probs=144.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
+.+||+++|++|+|||||+++++.+.+...+.++.+.+........++..+.+.+|||||++.+...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 57999999999999999999999999888888898888888888888888999999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCcc----cc-CHHHHHHHHHcCCeEEEeccCCCCChHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR----QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~----~~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 165 (176)
|+|++++.+++.+..|+..+.... ++.|+++|+||+|+... .. ..+...+++..+++++++||++|.|++++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999988887664 68999999999998753 22 2345677888899999999999999999999
Q ss_pred HHHHHHhcC
Q 030504 166 YLARKLAGS 174 (176)
Q Consensus 166 ~l~~~i~~~ 174 (176)
++.+.+.++
T Consensus 162 ~l~~~i~~k 170 (170)
T 1ek0_A 162 GIGEKIPLK 170 (170)
T ss_dssp HHHTTSCCC
T ss_pred HHHHHHhhC
Confidence 999887653
No 16
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.5e-36 Score=202.37 Aligned_cols=165 Identities=32% Similarity=0.580 Sum_probs=148.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
.+.+||+++|.+|||||||++++..+.+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 46799999999999999999999999988888889888888888888888999999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccccC-HHHHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+..+... .+...+++..+++++++||+++.|++++|++|
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 172 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEEL 172 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999998887654 57899999999999765443 45668888899999999999999999999999
Q ss_pred HHHHhcCC
Q 030504 168 ARKLAGST 175 (176)
Q Consensus 168 ~~~i~~~~ 175 (176)
++.+.+.+
T Consensus 173 ~~~~~~~~ 180 (195)
T 1x3s_A 173 VEKIIQTP 180 (195)
T ss_dssp HHHHHTSG
T ss_pred HHHHHhhh
Confidence 99987654
No 17
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=1.2e-36 Score=200.61 Aligned_cols=169 Identities=31% Similarity=0.512 Sum_probs=145.1
Q ss_pred CCCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccc
Q 030504 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (176)
Q Consensus 7 ~~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 86 (176)
+..+...+||+++|.+|+|||||++++..+.+...+.++.+.++.......++..+.+.+|||||++.+...+..+++.+
T Consensus 6 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 85 (181)
T 2efe_B 6 AGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGA 85 (181)
T ss_dssp ----CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTC
T ss_pred CCCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccC
Confidence 34456789999999999999999999999988887788888888777788888889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc--cCHHHHHHHHHcCCeEEEeccCCCCChHHH
Q 030504 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
|++++|||++++.+++.+..|+..+.... ++.|+++|+||+|+.... ...+...+++..+++++++||++|.|++++
T Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 165 (181)
T 2efe_B 86 AAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEI 165 (181)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHH
Confidence 99999999999999999999998887764 588999999999997533 234566788889999999999999999999
Q ss_pred HHHHHHHHhcCC
Q 030504 164 FLYLARKLAGST 175 (176)
Q Consensus 164 ~~~l~~~i~~~~ 175 (176)
|++|++.+.+.+
T Consensus 166 ~~~l~~~~~~~~ 177 (181)
T 2efe_B 166 FYEIARRLPRVQ 177 (181)
T ss_dssp HHHHHHTCC---
T ss_pred HHHHHHHHHhcC
Confidence 999999887654
No 18
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-36 Score=206.87 Aligned_cols=174 Identities=29% Similarity=0.486 Sum_probs=138.3
Q ss_pred CCCCCCCCCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccc
Q 030504 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (176)
Q Consensus 1 ~~~~~~~~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 80 (176)
|+.+.........+||+++|.+|||||||++++..+.+...+.++.+.++....+..++..+.+.+|||||++.+...+.
T Consensus 1 Ms~~~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 80 (223)
T 3cpj_B 1 MSSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITS 80 (223)
T ss_dssp ---------CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCG
T ss_pred CCccccCCCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHH
Confidence 44434334445679999999999999999999999998888888888888777777888889999999999999999999
Q ss_pred cccccccEEEEEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCC
Q 030504 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSN 157 (176)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~ 157 (176)
.+++.+|++|+|||++++.+++.+..|+..+.... .+.|+++|+||+|+.... . ..+...+++..+++++++||+++
T Consensus 81 ~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (223)
T 3cpj_B 81 AYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNS 160 (223)
T ss_dssp GGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-C
T ss_pred HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 99999999999999999999999999998887654 588999999999997532 2 24566788889999999999999
Q ss_pred CChHHHHHHHHHHHhcC
Q 030504 158 YNFEKPFLYLARKLAGS 174 (176)
Q Consensus 158 ~~v~~~~~~l~~~i~~~ 174 (176)
.|++++|++|++.+.++
T Consensus 161 ~gi~~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 161 ENVDKAFEELINTIYQK 177 (223)
T ss_dssp CCHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999998765
No 19
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=1.6e-36 Score=200.12 Aligned_cols=164 Identities=24% Similarity=0.328 Sum_probs=143.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
.+.+||+++|.+|+|||||++++..+.+...+.++.+.++ ......++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 3679999999999999999999999999888888888776 566677888899999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccc--cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 166 (176)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+.... ...+...+++..+++++++||+++.|++++|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 162 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR 162 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Confidence 9999999999999999998886654 489999999999996533 234566889999999999999999999999999
Q ss_pred HHHHHhcCC
Q 030504 167 LARKLAGST 175 (176)
Q Consensus 167 l~~~i~~~~ 175 (176)
+++.+.+..
T Consensus 163 l~~~~~~~~ 171 (181)
T 3t5g_A 163 IILEAEKMD 171 (181)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHHHhc
Confidence 999987654
No 20
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=1.7e-36 Score=197.99 Aligned_cols=163 Identities=29% Similarity=0.529 Sum_probs=138.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
...+||+++|.+|+|||||++++..+.+...+.++.+.+........++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 45799999999999999999999999888778888888887777778888899999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
+|+|++++.+++.+..|+..+.... ++.|+++|+||+|+.+.. . ..+...+++..+++++++||++|.|++++|++|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 163 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999988876654 589999999999997632 2 345668888889999999999999999999999
Q ss_pred HHHHhc
Q 030504 168 ARKLAG 173 (176)
Q Consensus 168 ~~~i~~ 173 (176)
++.+.+
T Consensus 164 ~~~~~~ 169 (170)
T 1z08_A 164 CKRMIE 169 (170)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 998875
No 21
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.3e-36 Score=203.72 Aligned_cols=162 Identities=35% Similarity=0.617 Sum_probs=144.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
..+||+++|.+|||||||++++..+.+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 104 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALIL 104 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 46899999999999999999999999988888898888888888888888999999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
|||++++.+++.+..|+..+.... .+.|+++|+||+|+.... . ..+...+++..+++++++||++|.|++++|.+++
T Consensus 105 v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 184 (201)
T 2ew1_A 105 TYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLA 184 (201)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999999999998887664 578999999999997532 2 3445677888899999999999999999999999
Q ss_pred HHHhc
Q 030504 169 RKLAG 173 (176)
Q Consensus 169 ~~i~~ 173 (176)
+.+.+
T Consensus 185 ~~i~~ 189 (201)
T 2ew1_A 185 CRLIS 189 (201)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 22
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.8e-36 Score=197.54 Aligned_cols=167 Identities=28% Similarity=0.559 Sum_probs=137.8
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccc
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 86 (176)
......+||+++|.+|+|||||++++..+.+. ..+.++.+.++.......++..+.+.+|||||++.+...+..+++.+
T Consensus 5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 84 (180)
T 2g6b_A 5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA 84 (180)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence 34567899999999999999999999988875 45677888887777777888889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHH
Q 030504 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
|++++|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.... . ..+...+++..+++++++||+++.|++++
T Consensus 85 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 164 (180)
T 2g6b_A 85 HALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLA 164 (180)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 99999999999999999999998887765 589999999999997533 2 33456788888999999999999999999
Q ss_pred HHHHHHHHhcC
Q 030504 164 FLYLARKLAGS 174 (176)
Q Consensus 164 ~~~l~~~i~~~ 174 (176)
|+++++.+.++
T Consensus 165 ~~~l~~~~~~~ 175 (180)
T 2g6b_A 165 FTAIAKELKRR 175 (180)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 23
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=2.3e-36 Score=200.01 Aligned_cols=161 Identities=21% Similarity=0.407 Sum_probs=136.7
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccccccccccc
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 87 (176)
+.+.+.+||+++|.+|||||||+++++.+.+...+.++.+ .+ ...+..++..+.+.+|||+|++.+. +++.+|
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~ 87 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD 87 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence 4557899999999999999999999999998887777743 33 3667778888999999999998876 778899
Q ss_pred EEEEEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCc---ccc-CHHHHHHHHHcC-CeEEEeccCCCCCh
Q 030504 88 CAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN---RQV-KAKQVTFHRKKN-LQYYEISAKSNYNF 160 (176)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~---~~~-~~~~~~~~~~~~-~~~~~~S~~~~~~v 160 (176)
++++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.. +.. ..+...+++..+ +.+++|||++|.|+
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv 167 (184)
T 3ihw_A 88 AVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNV 167 (184)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCH
Confidence 9999999999999999999999887753 5889999999999942 222 345667888886 89999999999999
Q ss_pred HHHHHHHHHHHhcCC
Q 030504 161 EKPFLYLARKLAGST 175 (176)
Q Consensus 161 ~~~~~~l~~~i~~~~ 175 (176)
+++|.++++.+.++.
T Consensus 168 ~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 168 ERVFQDVAQKVVALR 182 (184)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887653
No 24
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=1.2e-36 Score=200.08 Aligned_cols=166 Identities=25% Similarity=0.456 Sum_probs=142.9
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecC-cEEEEEEEeCCCccccccccccccccccE
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
+.+.+||+++|.+|||||||++++..+.+...+.++.+.+.....+..++ ..+.+.+|||||++.+...+..+++++|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 35679999999999999999999999888777778887777777777765 57899999999999999999999999999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhhc---CCCC-EEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHH
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRVC---ENIP-IVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p-~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
+++|||++++.+++.+..|+..+.... .+.| +++|+||+|+.... . ..+...+++..+++++++||++|.|+++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 162 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL 162 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 999999999999999999988876643 2555 89999999997632 2 3455678888899999999999999999
Q ss_pred HHHHHHHHHhcCC
Q 030504 163 PFLYLARKLAGST 175 (176)
Q Consensus 163 ~~~~l~~~i~~~~ 175 (176)
+|++|++.+.+.+
T Consensus 163 l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 163 CFQKVAAEILGIK 175 (178)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhhh
Confidence 9999999988764
No 25
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=2.6e-36 Score=200.20 Aligned_cols=163 Identities=21% Similarity=0.338 Sum_probs=137.1
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
.+...+||+++|.+|||||||++++..+.+...+.++.+.++ ......++..+.+.+|||+|++.+... ..+++.+|+
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~ 94 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA 94 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence 335789999999999999999999999998888888888665 345667788899999999999988775 668899999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhhc----CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEecc-CCCCChH
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISA-KSNYNFE 161 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~-~~~~~v~ 161 (176)
+++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.... . ..+...+++..+++++++|| +++.|++
T Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~ 174 (187)
T 3c5c_A 95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQ 174 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHH
Confidence 999999999999999999988887653 689999999999997532 2 34567888899999999999 8999999
Q ss_pred HHHHHHHHHHhc
Q 030504 162 KPFLYLARKLAG 173 (176)
Q Consensus 162 ~~~~~l~~~i~~ 173 (176)
++|+++++.+.+
T Consensus 175 ~lf~~l~~~i~~ 186 (187)
T 3c5c_A 175 HVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999998865
No 26
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1e-36 Score=203.96 Aligned_cols=165 Identities=27% Similarity=0.519 Sum_probs=133.9
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEE
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (176)
....+||+++|.+|+|||||+++++.+.+...+.++.+.++.......++..+.+.+|||||++.+...+..+++.+|++
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 104 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV 104 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence 34679999999999999999999999988888888888888888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCc-------ccc-CHHHHHHHHHcCCeEEEeccCCCCCh
Q 030504 90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-------RQV-KAKQVTFHRKKNLQYYEISAKSNYNF 160 (176)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~-------~~~-~~~~~~~~~~~~~~~~~~S~~~~~~v 160 (176)
++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.. +.. ..+...+++..+++++++||++|.|+
T Consensus 105 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv 184 (199)
T 2p5s_A 105 LLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNI 184 (199)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTH
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCH
Confidence 99999999999999999988887654 5899999999999963 222 23456788888999999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 030504 161 EKPFLYLARKLAGS 174 (176)
Q Consensus 161 ~~~~~~l~~~i~~~ 174 (176)
+++|.+|++.+.++
T Consensus 185 ~el~~~l~~~i~~~ 198 (199)
T 2p5s_A 185 VEAVLHLAREVKKR 198 (199)
T ss_dssp HHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998765
No 27
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.8e-36 Score=201.81 Aligned_cols=165 Identities=28% Similarity=0.475 Sum_probs=145.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
.+.+||+++|.+|+|||||++++..+.+...+.++.+.++.......+...+.+.+|||||++.+...+..+++.+|+++
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV 100 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence 46899999999999999999999999888788899998888888888888999999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCcc-c-cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-Q-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~-~-~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
+|||++++.+++.+..|+..+.... ++.|+++|+||+|+.+. . ...+..++++..+++++++||+++.|++++|++|
T Consensus 101 lV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 180 (192)
T 2fg5_A 101 IVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGI 180 (192)
T ss_dssp EEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence 9999999999999999998887764 58999999999999753 2 2345668888899999999999999999999999
Q ss_pred HHHHhcCC
Q 030504 168 ARKLAGST 175 (176)
Q Consensus 168 ~~~i~~~~ 175 (176)
.+.+.+.+
T Consensus 181 ~~~i~~~~ 188 (192)
T 2fg5_A 181 SRQIPPLD 188 (192)
T ss_dssp HHTCC---
T ss_pred HHHHHhhC
Confidence 99887653
No 28
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=3.3e-36 Score=196.49 Aligned_cols=163 Identities=27% Similarity=0.544 Sum_probs=138.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
..+||+++|++|+|||||++++..+.+...+.++.+.++.......++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 46899999999999999999999998887788888877777777778888999999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccccC-HHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
|+|++++.+++.+..|+..+.... ++.|+++|+||+|+..+... .+...+++..+++++++||++|.|++++|+++.+
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 161 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 161 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 999999999999999988887765 58999999999999654443 3456788888999999999999999999999999
Q ss_pred HHhcC
Q 030504 170 KLAGS 174 (176)
Q Consensus 170 ~i~~~ 174 (176)
.+.++
T Consensus 162 ~~~~~ 166 (170)
T 1g16_A 162 LIQEK 166 (170)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 88765
No 29
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=9.7e-37 Score=201.46 Aligned_cols=162 Identities=30% Similarity=0.572 Sum_probs=115.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
..+||+++|.+|||||||++++..+.+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 86 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML 86 (183)
T ss_dssp EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEE
Confidence 57999999999999999999999888887788888888887777788888999999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
|||++++.+++.+..|+..+.... ++.|+++|+||+|+.+.. . ..+...+++..+++++++||+++.|++++|.+|+
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 166 (183)
T 2fu5_C 87 VYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA 166 (183)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 999999999999999998887653 588999999999997633 2 3456688888999999999999999999999999
Q ss_pred HHHhc
Q 030504 169 RKLAG 173 (176)
Q Consensus 169 ~~i~~ 173 (176)
+.+.+
T Consensus 167 ~~i~~ 171 (183)
T 2fu5_C 167 RDIKA 171 (183)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 30
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=7.5e-36 Score=196.63 Aligned_cols=166 Identities=30% Similarity=0.515 Sum_probs=143.2
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccccccccccc
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 87 (176)
+++...+||+++|.+|||||||+++++.+.+...+.++.+..+. .....++..+.+.+|||||++.+...+..+++.+|
T Consensus 4 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 82 (181)
T 2fn4_A 4 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGH 82 (181)
T ss_dssp CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCS
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCC
Confidence 35567899999999999999999999999888888888876655 55667777889999999999999999999999999
Q ss_pred EEEEEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHH
Q 030504 88 CAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
++++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.... . ..+...++...+++++++||++|.|++++
T Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 162 (181)
T 2fn4_A 83 GFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEA 162 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Confidence 9999999999999999999888875442 588999999999997633 3 34456778888999999999999999999
Q ss_pred HHHHHHHHhcC
Q 030504 164 FLYLARKLAGS 174 (176)
Q Consensus 164 ~~~l~~~i~~~ 174 (176)
|++|++.+.+.
T Consensus 163 ~~~l~~~~~~~ 173 (181)
T 2fn4_A 163 FEQLVRAVRKY 173 (181)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999987653
No 31
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=7.3e-36 Score=197.68 Aligned_cols=163 Identities=32% Similarity=0.573 Sum_probs=144.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
...+||+++|.+|||||||++++..+.+...+.++.+.+........++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 45799999999999999999999999988888888888888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+.... . ..+...+++..+++++++||++|.|++++|+++
T Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 167 (186)
T 2bme_A 88 LVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQC 167 (186)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999988876653 589999999999997532 2 245668888899999999999999999999999
Q ss_pred HHHHhc
Q 030504 168 ARKLAG 173 (176)
Q Consensus 168 ~~~i~~ 173 (176)
++.+.+
T Consensus 168 ~~~~~~ 173 (186)
T 2bme_A 168 ARKILN 173 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 32
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=6.6e-36 Score=195.06 Aligned_cols=163 Identities=28% Similarity=0.517 Sum_probs=145.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
.+.+||+++|.+|+|||||++++..+.+...+.++.+.++........+..+.+.+|||||++.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 35799999999999999999999999988888899998888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhh-cCCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
+|||++++.+++.+..|+..+... .++.|+++|+||+|+.... . ..+...+++..+++++++||+++.|++++|+++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 163 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence 999999999999999998888776 4688999999999997633 2 344567788889999999999999999999999
Q ss_pred HHHHhc
Q 030504 168 ARKLAG 173 (176)
Q Consensus 168 ~~~i~~ 173 (176)
++.+.+
T Consensus 164 ~~~i~~ 169 (170)
T 1z0j_A 164 SRRIPS 169 (170)
T ss_dssp HHHCCC
T ss_pred HHHHhc
Confidence 998764
No 33
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6.2e-36 Score=199.39 Aligned_cols=162 Identities=24% Similarity=0.372 Sum_probs=140.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
...+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+..++..+.+.+|||||++++...+..+++.+|+++
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 94 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL 94 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence 4679999999999999999999999988887788876544 344566777899999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCcc-------------cc-CHHHHHHHHHcCC-eEEEecc
Q 030504 91 IMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QV-KAKQVTFHRKKNL-QYYEISA 154 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~-------------~~-~~~~~~~~~~~~~-~~~~~S~ 154 (176)
+|||++++.+++.+. .|+..+....++.|+++|+||+|+... .. ..+...+++..++ +++++||
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 174 (194)
T 2atx_A 95 ICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSA 174 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeC
Confidence 999999999999987 788888877779999999999999753 12 2445678888887 9999999
Q ss_pred CCCCChHHHHHHHHHHHhc
Q 030504 155 KSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 155 ~~~~~v~~~~~~l~~~i~~ 173 (176)
++|.|++++|+++++.+..
T Consensus 175 ~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 175 LTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp TTCTTHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999998864
No 34
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.1e-36 Score=201.46 Aligned_cols=166 Identities=28% Similarity=0.565 Sum_probs=137.8
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
+....+||+++|.+|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+|||||++.+...+..+++.+|+
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKG 101 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSE
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 34567999999999999999999999888877778888888888888888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHc-CCeEEEeccCCCCChHHHH
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKK-NLQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~-~~~~~~~S~~~~~~v~~~~ 164 (176)
+++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.... . ..+...+++.. +++++++||++|.|++++|
T Consensus 102 iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 181 (192)
T 2il1_A 102 IILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIF 181 (192)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHH
Confidence 999999999999999999988887664 489999999999997533 2 23455677664 7899999999999999999
Q ss_pred HHHHHHHhcC
Q 030504 165 LYLARKLAGS 174 (176)
Q Consensus 165 ~~l~~~i~~~ 174 (176)
++|++.+.++
T Consensus 182 ~~l~~~i~~~ 191 (192)
T 2il1_A 182 LKLVDDILKK 191 (192)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999988754
No 35
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=6e-36 Score=199.28 Aligned_cols=164 Identities=29% Similarity=0.521 Sum_probs=145.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
...+||+++|.+|+|||||++++..+.+...+.++.+.++........+..+.+.+|||||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 35699999999999999999999999888888888888888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+.... . ..+...+++..+++++++||+++.|++++|++|
T Consensus 103 ~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 182 (193)
T 2oil_A 103 LVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETV 182 (193)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999988887654 588999999999997632 2 345667888889999999999999999999999
Q ss_pred HHHHhcC
Q 030504 168 ARKLAGS 174 (176)
Q Consensus 168 ~~~i~~~ 174 (176)
++.+.++
T Consensus 183 ~~~i~~~ 189 (193)
T 2oil_A 183 LKEIFAK 189 (193)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987653
No 36
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=3.7e-36 Score=198.94 Aligned_cols=164 Identities=24% Similarity=0.407 Sum_probs=140.0
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEE
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (176)
+...+||+++|.+|||||||++++..+.+...+.++.+..+ ......++..+.+.+|||||++.+...+..+++++|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 45689999999999999999999999988887888887655 34556677889999999999999999999999999999
Q ss_pred EEEEeCCChhhhhhH-HHHHHHHhhhcCCCCEEEEEeCCCCCcc-------------cc-CHHHHHHHHHcC-CeEEEec
Q 030504 90 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR-------------QV-KAKQVTFHRKKN-LQYYEIS 153 (176)
Q Consensus 90 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~liv~nK~Dl~~~-------------~~-~~~~~~~~~~~~-~~~~~~S 153 (176)
++|||++++.+++.+ ..|+..+....++.|+++|+||+|+... .. ..+...+++..+ +++++||
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 162 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 162 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEee
Confidence 999999999999998 6788888777779999999999999742 12 234567787877 7999999
Q ss_pred cC-CCCChHHHHHHHHHHHhcC
Q 030504 154 AK-SNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 154 ~~-~~~~v~~~~~~l~~~i~~~ 174 (176)
|+ ++.|++++|+++++.+.++
T Consensus 163 a~~~~~gi~~l~~~i~~~~l~k 184 (184)
T 1m7b_A 163 ALQSENSVRDIFHVATLACVNK 184 (184)
T ss_dssp TTTBHHHHHHHHHHHHHHHHTC
T ss_pred ecCCCcCHHHHHHHHHHHHhcC
Confidence 99 6899999999999988753
No 37
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=4.5e-36 Score=197.39 Aligned_cols=165 Identities=29% Similarity=0.563 Sum_probs=144.5
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
.+.+.+||+++|.+|+|||||+++++.+.+...+.++.+.+........++..+.+.+|||||++.+...+..++..+|+
T Consensus 10 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 89 (179)
T 2y8e_A 10 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTV 89 (179)
T ss_dssp --CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCE
Confidence 34567999999999999999999999998888888888888888888888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHH
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 165 (176)
+++|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.... . ..+...+++..+++++++||+++.|++++|+
T Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 169 (179)
T 2y8e_A 90 AVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFR 169 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999999999988887654 589999999999997533 2 3445677888899999999999999999999
Q ss_pred HHHHHHhc
Q 030504 166 YLARKLAG 173 (176)
Q Consensus 166 ~l~~~i~~ 173 (176)
+|++.+.+
T Consensus 170 ~l~~~~~~ 177 (179)
T 2y8e_A 170 RVAAALPG 177 (179)
T ss_dssp HHHHTCC-
T ss_pred HHHHHHhh
Confidence 99988764
No 38
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=4.7e-36 Score=200.99 Aligned_cols=165 Identities=25% Similarity=0.379 Sum_probs=132.8
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
.....+||+++|.+|||||||++++..+.+...+.++.+..+ ......++..+.+.+|||||++.+...+..++.++|+
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI 94 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence 456789999999999999999999998888877788876444 4456667788899999999999999999999999999
Q ss_pred EEEEEeCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCcc-------------cc-CHHHHHHHHHcCC-eEEEe
Q 030504 89 AIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QV-KAKQVTFHRKKNL-QYYEI 152 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~-------------~~-~~~~~~~~~~~~~-~~~~~ 152 (176)
+++|||++++.+++.+. .|+..+....++.|+++|+||+|+... .. ..+...+++..++ +++++
T Consensus 95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 174 (201)
T 2q3h_A 95 FLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIEC 174 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEE
Confidence 99999999999999987 788888877779999999999999752 12 2345677777787 99999
Q ss_pred ccCCCCChHHHHHHHHHHHhcC
Q 030504 153 SAKSNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 153 S~~~~~~v~~~~~~l~~~i~~~ 174 (176)
||++|.|++++|+++++.+.+.
T Consensus 175 Sa~~g~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 175 SALTQKNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999987653
No 39
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=4.3e-36 Score=200.39 Aligned_cols=167 Identities=23% Similarity=0.296 Sum_probs=136.0
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc-cccccccccc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-LRDGYYIHGQ 87 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~~~ 87 (176)
+....+||+++|.+|||||||+++|..........++.+.+.....+..++..+.+.+|||+|++.+.. ++..+++.+|
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d 98 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD 98 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence 445679999999999999999999865444333344555455555667788889999999999988764 7778889999
Q ss_pred EEEEEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHH
Q 030504 88 CAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
++++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.... . ..+...+++..+++++++||+++.|++++
T Consensus 99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~l 178 (195)
T 3cbq_A 99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTREL 178 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHH
Confidence 9999999999999999999998887654 489999999999997533 3 33566788888999999999999999999
Q ss_pred HHHHHHHHhcCC
Q 030504 164 FLYLARKLAGST 175 (176)
Q Consensus 164 ~~~l~~~i~~~~ 175 (176)
|+++++.+.++.
T Consensus 179 f~~l~~~i~~~~ 190 (195)
T 3cbq_A 179 FEGAVRQIRLRR 190 (195)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHhc
Confidence 999999987653
No 40
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=7.4e-36 Score=194.34 Aligned_cols=163 Identities=29% Similarity=0.519 Sum_probs=138.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
++.+||+++|.+|+|||||++++..+.+...+.++.+... ......++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 80 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEE
Confidence 4679999999999999999999999888777777776554 344566778889999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhcC--CCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 166 (176)
+|||++++.+++.+..|+..+..... +.|+++|+||+|+.... . ..+...+++..+++++++||++|.|++++|++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (168)
T 1u8z_A 81 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD 160 (168)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence 99999999999999999888877653 89999999999997532 2 34566788888999999999999999999999
Q ss_pred HHHHHhcC
Q 030504 167 LARKLAGS 174 (176)
Q Consensus 167 l~~~i~~~ 174 (176)
+++.+.++
T Consensus 161 l~~~i~~~ 168 (168)
T 1u8z_A 161 LMREIRAR 168 (168)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhC
Confidence 99988753
No 41
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=1.4e-35 Score=193.06 Aligned_cols=160 Identities=33% Similarity=0.580 Sum_probs=138.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
+.+||+++|.+|||||||++++..+.+...+.++.+.... .....++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 5799999999999999999999999888888888875543 455667788999999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCcccc--CHHHHHHHHHc-CCeEEEeccCCCCChHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQV--KAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~~--~~~~~~~~~~~-~~~~~~~S~~~~~~v~~~~~~ 166 (176)
|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+... ..+...+++.. +++++++||++|.|++++|++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD 160 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence 999999999999999988887653 5899999999999976432 33456777776 799999999999999999999
Q ss_pred HHHHHh
Q 030504 167 LARKLA 172 (176)
Q Consensus 167 l~~~i~ 172 (176)
+++.+.
T Consensus 161 l~~~i~ 166 (167)
T 1c1y_A 161 LVRQIN 166 (167)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999875
No 42
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=1.4e-35 Score=199.44 Aligned_cols=164 Identities=30% Similarity=0.545 Sum_probs=145.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
...+||+++|.+|+|||||++++..+.+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 45799999999999999999999999988888888888888777888888899999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
+|||++++.+++.+..|+..+.... ++.|+++|+||+|+.... . ..+...++...+++++++||++|.|++++|.+|
T Consensus 86 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 165 (206)
T 2bcg_Y 86 IVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTM 165 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999998887654 579999999999997633 2 334567888889999999999999999999999
Q ss_pred HHHHhcC
Q 030504 168 ARKLAGS 174 (176)
Q Consensus 168 ~~~i~~~ 174 (176)
++.+.++
T Consensus 166 ~~~i~~~ 172 (206)
T 2bcg_Y 166 ARQIKES 172 (206)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987653
No 43
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.3e-36 Score=201.79 Aligned_cols=166 Identities=22% Similarity=0.304 Sum_probs=138.9
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
+..+.+||+++|.+|||||||++++..+.+...+.++.+..+ ......++..+.+.+|||||++.+...+..+++.+|+
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 98 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG 98 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence 335789999999999999999999999999888888887666 5555566778899999999999999999999999999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCcccc--CHHHHHHHHHcCCeEEEeccCCCCChHHHH
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~ 164 (176)
+++|||++++.+++.+..|+..+.... .+.|+++|+||+|+..... ..+...+++..+++++++||++|.|++++|
T Consensus 99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 178 (201)
T 3oes_A 99 YVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIF 178 (201)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHH
Confidence 999999999999999999998887653 5789999999999975332 345668888999999999999999999999
Q ss_pred HHHHHHHhcCC
Q 030504 165 LYLARKLAGST 175 (176)
Q Consensus 165 ~~l~~~i~~~~ 175 (176)
++|++.+.+..
T Consensus 179 ~~l~~~i~~~~ 189 (201)
T 3oes_A 179 TKVIQEIARVE 189 (201)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHhhh
Confidence 99999887653
No 44
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=4e-36 Score=199.59 Aligned_cols=165 Identities=30% Similarity=0.548 Sum_probs=140.6
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccc-ccccccccccc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-GLRDGYYIHGQ 87 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-~~~~~~~~~~~ 87 (176)
...+.+||+++|.+|||||||+++++.+.+...+.++.+.++....+..++..+.+.+|||||++.+. ..+..+++.+|
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d 95 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 95 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence 44578999999999999999999999999888888888888887778888888999999999999988 88889999999
Q ss_pred EEEEEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCC---CCh
Q 030504 88 CAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSN---YNF 160 (176)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~---~~v 160 (176)
++++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.... . ..+...+++..+++++++||+++ .|+
T Consensus 96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i 175 (189)
T 1z06_A 96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHV 175 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCH
Confidence 9999999999999999999998887763 589999999999997543 2 34456788889999999999999 999
Q ss_pred HHHHHHHHHHHhc
Q 030504 161 EKPFLYLARKLAG 173 (176)
Q Consensus 161 ~~~~~~l~~~i~~ 173 (176)
+++|.+|++.+.+
T Consensus 176 ~~l~~~l~~~i~~ 188 (189)
T 1z06_A 176 EAIFMTLAHKLKS 188 (189)
T ss_dssp HHHHHHHC-----
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988754
No 45
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=5.6e-36 Score=202.21 Aligned_cols=164 Identities=27% Similarity=0.446 Sum_probs=140.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
...+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 4679999999999999999999999998888888887544 345566778899999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCccc----------cCHHHHHHHHHcCC-eEEEeccCCCC
Q 030504 91 IMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ----------VKAKQVTFHRKKNL-QYYEISAKSNY 158 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~----------~~~~~~~~~~~~~~-~~~~~S~~~~~ 158 (176)
+|||++++.+++.+. .|+..+....++.|+++|+||+|+.... ...+...+++..++ +++++||++|.
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~ 165 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQ 165 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCC
Confidence 999999999999987 7888888777799999999999987542 23445677888885 99999999999
Q ss_pred ChHHHHHHHHHHHhcCC
Q 030504 159 NFEKPFLYLARKLAGST 175 (176)
Q Consensus 159 ~v~~~~~~l~~~i~~~~ 175 (176)
|++++|+++++.+.+.+
T Consensus 166 gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 166 NVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp THHHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHHhhhh
Confidence 99999999999887643
No 46
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=4e-36 Score=201.29 Aligned_cols=163 Identities=31% Similarity=0.576 Sum_probs=134.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
...+||+++|.+|||||||++++..+.+...+.++.+.+.....+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 35799999999999999999999998888778888887777777778888899999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
+|||++++.+++.+..|+..+.... ++.|+++|+||+|+.... . ..+...+++..+++++++||++|.|++++|.+|
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l 182 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKC 182 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999988887654 589999999999997533 2 245667888899999999999999999999999
Q ss_pred HHHHhc
Q 030504 168 ARKLAG 173 (176)
Q Consensus 168 ~~~i~~ 173 (176)
++.+.+
T Consensus 183 ~~~i~~ 188 (200)
T 2o52_A 183 ARTILN 188 (200)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 47
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=9.3e-36 Score=199.83 Aligned_cols=163 Identities=26% Similarity=0.540 Sum_probs=144.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
...+||+++|.+|||||||+++++.+.+...+.++.+.++.......++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 35799999999999999999999999888888888888888888888888999999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+.... . ..+...+++..+++++++||++|.|++++|++|
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 165 (203)
T 1zbd_A 86 LMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERL 165 (203)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHH
Confidence 9999999999999999998887764 589999999999997633 2 344567888889999999999999999999999
Q ss_pred HHHHhc
Q 030504 168 ARKLAG 173 (176)
Q Consensus 168 ~~~i~~ 173 (176)
++.+.+
T Consensus 166 ~~~i~~ 171 (203)
T 1zbd_A 166 VDVICE 171 (203)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988754
No 48
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=1.2e-35 Score=196.45 Aligned_cols=164 Identities=26% Similarity=0.467 Sum_probs=141.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
+..+||+++|.+|+|||||++++..+.+...+.++.+... ......++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 4679999999999999999999999988877777776444 345567788899999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCccc--------------cCHHHHHHHHHcCC-eEEEecc
Q 030504 91 IMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ--------------VKAKQVTFHRKKNL-QYYEISA 154 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~--------------~~~~~~~~~~~~~~-~~~~~S~ 154 (176)
+|||++++.+++.+. .|+..+....++.|+++|+||+|+.... ...+...+++..++ +++++||
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 161 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecC
Confidence 999999999999987 6888888777799999999999986531 12345577788886 9999999
Q ss_pred CCCCChHHHHHHHHHHHhcCC
Q 030504 155 KSNYNFEKPFLYLARKLAGST 175 (176)
Q Consensus 155 ~~~~~v~~~~~~l~~~i~~~~ 175 (176)
++|.|++++|+++++.+.+.+
T Consensus 162 ~~g~gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 162 LTQRGLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp TTCTTHHHHHHHHHHHHSCCC
T ss_pred CCccCHHHHHHHHHHHHhccc
Confidence 999999999999999988765
No 49
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=7.6e-36 Score=201.89 Aligned_cols=166 Identities=28% Similarity=0.504 Sum_probs=121.1
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
...+.+||+++|.+|||||||++++..+.+...+.++.+..+ ......++..+.+.+|||||++.+...+..++.++|+
T Consensus 30 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 108 (214)
T 2j1l_A 30 PGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASV 108 (214)
T ss_dssp --CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEE
T ss_pred CCcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCE
Confidence 445789999999999999999999998888777777775433 4456677788899999999999999999999999999
Q ss_pred EEEEEeCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCccc-------------c-CHHHHHHHHHcCC-eEEEe
Q 030504 89 AIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKNL-QYYEI 152 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~-------------~-~~~~~~~~~~~~~-~~~~~ 152 (176)
+++|||++++.+++.+. .|+..+....++.|+++|+||+|+.... . ..+...+++..++ +++++
T Consensus 109 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 188 (214)
T 2j1l_A 109 LLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLEC 188 (214)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEe
Confidence 99999999999999987 7888888777799999999999997532 1 2345677888887 99999
Q ss_pred ccCCCCChHHHHHHHHHHHhcCC
Q 030504 153 SAKSNYNFEKPFLYLARKLAGST 175 (176)
Q Consensus 153 S~~~~~~v~~~~~~l~~~i~~~~ 175 (176)
||++|.|++++|++|++.+.+.+
T Consensus 189 SA~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 189 SARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999987654
No 50
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=1.3e-35 Score=193.69 Aligned_cols=162 Identities=22% Similarity=0.287 Sum_probs=126.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc-ccccccccccEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-LRDGYYIHGQCAII 91 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~~~~~i~ 91 (176)
.+||+++|.+|||||||++++..+.......++.+.+........++..+.+.+||++|++.+.. .+..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 58999999999999999999887776655555555666666777888899999999999998876 77778899999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhcC--CCCEEEEEeCCCCCcc-c-cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNR-Q-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~liv~nK~Dl~~~-~-~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
|||++++.+++.+..|+..+....+ +.|+++|+||+|+... . ...+...+++..+++++++||+++.|++++|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 9999999999999999988877653 8999999999999743 2 3344567888999999999999999999999999
Q ss_pred HHHHhcC
Q 030504 168 ARKLAGS 174 (176)
Q Consensus 168 ~~~i~~~ 174 (176)
++.+.++
T Consensus 162 ~~~i~~~ 168 (169)
T 3q85_A 162 VRQIRLR 168 (169)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9988754
No 51
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=1.8e-35 Score=198.22 Aligned_cols=165 Identities=28% Similarity=0.454 Sum_probs=140.1
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccccccccccc
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 87 (176)
.++...+||+++|.+|+|||||++++..+.+...+.++.+.++.. ....++..+.+.+|||||++.+...+..+++.+|
T Consensus 20 ~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 98 (201)
T 2gco_A 20 HMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTD 98 (201)
T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE-EEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCS
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE-EEEECCEEEEEEEEECCCchhHHHHHHHhcCCCC
Confidence 345568999999999999999999999998887777887755543 3566778889999999999999999999999999
Q ss_pred EEEEEEeCCChhhhhhH-HHHHHHHhhhcCCCCEEEEEeCCCCCccc-------------c-CHHHHHHHHHcCC-eEEE
Q 030504 88 CAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKNL-QYYE 151 (176)
Q Consensus 88 ~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~liv~nK~Dl~~~~-------------~-~~~~~~~~~~~~~-~~~~ 151 (176)
++++|||++++.+++.+ ..|+..+....++.|+++|+||+|+.... . ..+...+++..++ ++++
T Consensus 99 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 178 (201)
T 2gco_A 99 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLE 178 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEE
Confidence 99999999999999998 57888887777799999999999997531 1 2345577778887 8999
Q ss_pred eccCCCCChHHHHHHHHHHHhc
Q 030504 152 ISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 152 ~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
+||++|.|++++|++|++.+.+
T Consensus 179 ~SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 179 CSAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHC
T ss_pred eeCCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999998764
No 52
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=1.6e-35 Score=197.18 Aligned_cols=164 Identities=29% Similarity=0.528 Sum_probs=142.7
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEe-EEEEEecCc---------EEEEEEEeCCCcccccccc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH-PLDFFTNCG---------KIRFYCWDTAGQEKFGGLR 79 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~~~D~~g~~~~~~~~ 79 (176)
....+||+++|.+|+|||||++++..+.+...+.++.+.++. ......++. .+.+.+|||||++.+...+
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 87 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence 456799999999999999999999999888888888887776 555555555 7899999999999999999
Q ss_pred ccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccC
Q 030504 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAK 155 (176)
Q Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~ 155 (176)
..+++.+|++++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.... . ..+...++...+++++++||+
T Consensus 88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 167 (195)
T 3bc1_A 88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAA 167 (195)
T ss_dssp HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTT
T ss_pred HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECC
Confidence 999999999999999999999999999998887765 589999999999997632 2 345667888889999999999
Q ss_pred CCCChHHHHHHHHHHHhc
Q 030504 156 SNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 156 ~~~~v~~~~~~l~~~i~~ 173 (176)
++.|++++|++|++.+.+
T Consensus 168 ~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 168 NGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999998764
No 53
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=7.8e-36 Score=200.53 Aligned_cols=163 Identities=24% Similarity=0.407 Sum_probs=139.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
...+||+++|.+|||||||+++|..+.+...+.++.+.++ ...+..++..+.+.+|||+|++.+...+..+++++|+++
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 104 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 104 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence 4679999999999999999999999998888888887665 345566778899999999999999999999999999999
Q ss_pred EEEeCCChhhhhhH-HHHHHHHhhhcCCCCEEEEEeCCCCCcc-------------cc-CHHHHHHHHHcC-CeEEEecc
Q 030504 91 IMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR-------------QV-KAKQVTFHRKKN-LQYYEISA 154 (176)
Q Consensus 91 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~liv~nK~Dl~~~-------------~~-~~~~~~~~~~~~-~~~~~~S~ 154 (176)
+|||++++.+++.+ ..|+..+....++.|+++|+||+|+... .. ..+...+++..+ +.+++|||
T Consensus 105 lv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA 184 (205)
T 1gwn_A 105 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 184 (205)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeee
Confidence 99999999999998 6888888777779999999999999742 12 234567787777 79999999
Q ss_pred C-CCCChHHHHHHHHHHHhcC
Q 030504 155 K-SNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 155 ~-~~~~v~~~~~~l~~~i~~~ 174 (176)
+ ++.|++++|+++++.+.++
T Consensus 185 k~~~~gv~~lf~~l~~~~l~~ 205 (205)
T 1gwn_A 185 LQSENSVRDIFHVATLACVNK 205 (205)
T ss_dssp TTCHHHHHHHHHHHHHHHHHC
T ss_pred ccCCcCHHHHHHHHHHHHhhC
Confidence 9 6899999999999988653
No 54
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=100.00 E-value=8.4e-37 Score=203.86 Aligned_cols=165 Identities=19% Similarity=0.173 Sum_probs=139.0
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCcc-----------ccceeEEEeEEEE-EecCcEEEEEEEeCCCccccc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY-----------EPTIGVEVHPLDF-FTNCGKIRFYCWDTAGQEKFG 76 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~~~D~~g~~~~~ 76 (176)
.....+||+++|.+|||||||++ ++.+.+...+ .++.+.++..... ..++..+.+.+|||||++.+.
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~-~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLK-WIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHH-HHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred ccccccEEEEECCCCCCHHHHHH-HHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 44568999999999999999996 5667766553 3466666666555 667788999999999999999
Q ss_pred cccccccccccEEEEEEeCC------ChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCC-eE
Q 030504 77 GLRDGYYIHGQCAIIMFDVT------ARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QY 149 (176)
Q Consensus 77 ~~~~~~~~~~~~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~-~~ 149 (176)
..+..+++++|++++|||++ +..+++.+..|+..+....++.|+++|+||+|+.+.....+..++++..++ ++
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 168 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFPV 168 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSCE
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCceE
Confidence 99999999999999999999 456777777777777544578999999999999887666777888889999 99
Q ss_pred EEeccCCCCChHHHHHHHHHHHhcC
Q 030504 150 YEISAKSNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 150 ~~~S~~~~~~v~~~~~~l~~~i~~~ 174 (176)
+++||++|.|++++|++|++.+.++
T Consensus 169 ~~~Sa~~~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 169 LEAVATEGKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp EECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred EEEecCCCcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999988654
No 55
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=2.4e-35 Score=198.27 Aligned_cols=164 Identities=34% Similarity=0.644 Sum_probs=143.3
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEE
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (176)
....+||+++|.+|+|||||+++++.+.+...+.++.+.+.....+..++..+.+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 35689999999999999999999999988888888888888888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhhhhHHHHHHHHhhhc-----CCCCEEEEEeCCCCCccccC-HHHHHHHH-HcCCeEEEeccCCCCChHH
Q 030504 90 IIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVK-AKQVTFHR-KKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~liv~nK~Dl~~~~~~-~~~~~~~~-~~~~~~~~~S~~~~~~v~~ 162 (176)
++|||++++.+++.+..|+..+.... .+.|+++|+||+|+..+... .+...++. ..+++++++||++|.|+++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 164 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQ 164 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHH
Confidence 99999999999999999988876654 47899999999999854443 34456666 5678999999999999999
Q ss_pred HHHHHHHHHhc
Q 030504 163 PFLYLARKLAG 173 (176)
Q Consensus 163 ~~~~l~~~i~~ 173 (176)
+|++|++.+.+
T Consensus 165 l~~~l~~~~~~ 175 (207)
T 1vg8_A 165 AFQTIARNALK 175 (207)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 56
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=1.3e-35 Score=196.51 Aligned_cols=166 Identities=28% Similarity=0.508 Sum_probs=141.1
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccccccccccc
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 87 (176)
..+++.+||+++|.+|+|||||++++..+.+...+.++.+... ......++..+.+.+|||||++.+...+..+++.+|
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 91 (187)
T 2a9k_A 13 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE 91 (187)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCC
Confidence 3456789999999999999999999999888877777776544 344566777889999999999999999999999999
Q ss_pred EEEEEEeCCChhhhhhHHHHHHHHhhhcC--CCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHH
Q 030504 88 CAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
++++|||++++.+++.+..|+..+..... +.|+++|+||+|+.... . ..+...+++..+++++++||+++.|++++
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 171 (187)
T 2a9k_A 92 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKV 171 (187)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHH
Confidence 99999999999999999999888877654 89999999999997632 2 34566888889999999999999999999
Q ss_pred HHHHHHHHhcC
Q 030504 164 FLYLARKLAGS 174 (176)
Q Consensus 164 ~~~l~~~i~~~ 174 (176)
|++|++.+.++
T Consensus 172 ~~~l~~~i~~~ 182 (187)
T 2a9k_A 172 FFDLMREIRAR 182 (187)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988653
No 57
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.8e-37 Score=205.51 Aligned_cols=163 Identities=26% Similarity=0.534 Sum_probs=146.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
..+||+++|.+|||||||++++..+.+...+.++.+.++.......++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 101 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL 101 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEE
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEE
Confidence 57899999999999999999999999888888888888888888888888999999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc--cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
|||++++.+++.+..|+..+.... ++.|+++|+||+|+.... ...+...+++..+++++++||++|.|++++|++|+
T Consensus 102 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 181 (191)
T 3dz8_A 102 MYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLV 181 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999999887765 689999999999997543 23445678888999999999999999999999999
Q ss_pred HHHhcC
Q 030504 169 RKLAGS 174 (176)
Q Consensus 169 ~~i~~~ 174 (176)
+.+.++
T Consensus 182 ~~i~~~ 187 (191)
T 3dz8_A 182 DAICDK 187 (191)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988764
No 58
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=2e-35 Score=198.47 Aligned_cols=165 Identities=28% Similarity=0.511 Sum_probs=142.3
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccccccccccc
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 87 (176)
..+.+.+||+++|.+|||||||++++..+.+...+.++.+... ...+..++..+.+.+|||||++.+...+..++..+|
T Consensus 9 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 87 (206)
T 2bov_A 9 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE 87 (206)
T ss_dssp --CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCC
Confidence 4556789999999999999999999999988887888877554 345567778889999999999999999999999999
Q ss_pred EEEEEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHH
Q 030504 88 CAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
++++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.... . ..+...++...+++++++||++|.|++++
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 167 (206)
T 2bov_A 88 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKV 167 (206)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Confidence 9999999999999999999998887765 389999999999997633 2 34566788888999999999999999999
Q ss_pred HHHHHHHHhc
Q 030504 164 FLYLARKLAG 173 (176)
Q Consensus 164 ~~~l~~~i~~ 173 (176)
|.+|++.+.+
T Consensus 168 ~~~l~~~i~~ 177 (206)
T 2bov_A 168 FFDLMREIRA 177 (206)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 59
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=100.00 E-value=9.3e-36 Score=199.14 Aligned_cols=163 Identities=20% Similarity=0.342 Sum_probs=131.3
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCC-ccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccc
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 86 (176)
+++....||+++|.+|||||||+++|..+.+.. .+.++.+...... +...+.+.+|||||++.+...+..+++.+
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 87 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETF----EKGRVAFTVFDMGGAKKFRGLWETYYDNI 87 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEE----EETTEEEEEEEECCSGGGGGGGGGGCTTC
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEE----EeCCEEEEEEECCCCHhHHHHHHHHHhcC
Confidence 455678999999999999999999999998887 7788888555443 34678899999999999999999999999
Q ss_pred cEEEEEEeCCChhhhhhHHHHHHHHhhhc---------CCCCEEEEEeCCCCCccccCHHHH------HHHHHcCCeEEE
Q 030504 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC---------ENIPIVLCGNKVDVKNRQVKAKQV------TFHRKKNLQYYE 151 (176)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---------~~~p~liv~nK~Dl~~~~~~~~~~------~~~~~~~~~~~~ 151 (176)
|++|+|||++++.+++.+..|+..+.... ++.|+++|+||+|+.......+.. .+++..++.+++
T Consensus 88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (199)
T 4bas_A 88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFA 167 (199)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEE
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEE
Confidence 99999999999999999988888776542 289999999999998653322221 112557789999
Q ss_pred eccCCCCChHHHHHHHHHHHhcC
Q 030504 152 ISAKSNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 152 ~S~~~~~~v~~~~~~l~~~i~~~ 174 (176)
|||++|.|++++|++|++.+.++
T Consensus 168 ~Sa~~g~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 168 SNGLKGTGVHEGFSWLQETASRQ 190 (199)
T ss_dssp CBTTTTBTHHHHHHHHHHHHHHH
T ss_pred eeCCCccCHHHHHHHHHHHHHHH
Confidence 99999999999999999988654
No 60
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=2.7e-35 Score=198.83 Aligned_cols=165 Identities=27% Similarity=0.524 Sum_probs=142.9
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
.....+||+++|.+|+|||||++++..+.+...+.++.+.++....+..++..+.+.+|||||++.+...+..++..+|+
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMG 95 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence 33467999999999999999999999988887788888878877777788888999999999999999999999999999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccccC-HHHHHHHHHcCCeEEEeccCCCCChHHHHHH
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 166 (176)
+++|||++++.+++.+..|+..+.... .+.|+++|+||+|+..+... .+...++...+++++++||+++.|++++|.+
T Consensus 96 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 175 (213)
T 3cph_A 96 IILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFT 175 (213)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 999999999999999999988887664 47899999999999654443 3456778888999999999999999999999
Q ss_pred HHHHHhc
Q 030504 167 LARKLAG 173 (176)
Q Consensus 167 l~~~i~~ 173 (176)
|++.+.+
T Consensus 176 l~~~~~~ 182 (213)
T 3cph_A 176 LAKLIQE 182 (213)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988764
No 61
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=1.8e-35 Score=194.97 Aligned_cols=165 Identities=27% Similarity=0.555 Sum_probs=128.2
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEec-CcEEEEEEEeCCCccccccccccccccccE
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
....+||+++|++|+|||||++++..+.+...+.++.+.+.....+..+ +..+.+.+|||||++.+...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 4568999999999999999999999998888888888877777777666 567899999999999999999999999999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhhc-----CCCCEEEEEeCCCCCcc-c-c-CHHHHHHHH-HcCCeEEEeccCCCCC
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNR-Q-V-KAKQVTFHR-KKNLQYYEISAKSNYN 159 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~liv~nK~Dl~~~-~-~-~~~~~~~~~-~~~~~~~~~S~~~~~~ 159 (176)
+++|||++++.+++.+..|+..+.... .+.|+++|+||+|+... . . ..+...+++ ..+++++++||++|.|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g 164 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN 164 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence 999999999999999999988876653 58899999999999542 2 2 334556666 4678999999999999
Q ss_pred hHHHHHHHHHHHhcC
Q 030504 160 FEKPFLYLARKLAGS 174 (176)
Q Consensus 160 v~~~~~~l~~~i~~~ 174 (176)
++++|+++++.+.++
T Consensus 165 i~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 165 VDTAFEEIARSALQQ 179 (182)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988654
No 62
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.3e-35 Score=196.80 Aligned_cols=163 Identities=28% Similarity=0.451 Sum_probs=133.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
+..+||+++|.+|||||||++++..+.+...+.++.+..+.. ....++..+.+.+|||||++.+...+..++..+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 467899999999999999999999998887777777655543 3566777889999999999999999999999999999
Q ss_pred EEEeCCChhhhhhH-HHHHHHHhhhcCCCCEEEEEeCCCCCccc-------------c-CHHHHHHHHHcCC-eEEEecc
Q 030504 91 IMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKNL-QYYEISA 154 (176)
Q Consensus 91 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~liv~nK~Dl~~~~-------------~-~~~~~~~~~~~~~-~~~~~S~ 154 (176)
+|||++++.+++.+ ..|+..+....++.|+++|+||+|+.... . ..+...++...++ .++++||
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 181 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 181 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeC
Confidence 99999999999988 57888887777799999999999997531 1 2244567777777 8999999
Q ss_pred CCCCChHHHHHHHHHHHhcC
Q 030504 155 KSNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 155 ~~~~~v~~~~~~l~~~i~~~ 174 (176)
++|.|++++|++|++.+.+.
T Consensus 182 ~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 182 KTKEGVREVFETATRAALQK 201 (207)
T ss_dssp TTCTTHHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999988754
No 63
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=6e-35 Score=195.90 Aligned_cols=163 Identities=31% Similarity=0.489 Sum_probs=140.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcE-----------------------------
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK----------------------------- 61 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 61 (176)
...+||+++|.+|+|||||+++++.+.+...+.++.+.++....+..++..
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 357999999999999999999999998888888888877777766665544
Q ss_pred --------EEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc
Q 030504 62 --------IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133 (176)
Q Consensus 62 --------~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~ 133 (176)
+.+.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+.... +.|+++|+||+|+....
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~piilv~NK~D~~~~~ 163 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS-NYIIILVANKIDKNKFQ 163 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CCEEEEEEECTTCC-CC
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC-CCcEEEEEECCCccccc
Confidence 889999999999999999999999999999999999999999999988887654 49999999999944333
Q ss_pred c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHHHhcC
Q 030504 134 V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 134 ~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~i~~~ 174 (176)
. ..+...+++..+++++++||+++.|++++|++|++.+.++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 164 VDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp SCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 3 3456788888999999999999999999999999987653
No 64
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=7.6e-35 Score=193.11 Aligned_cols=162 Identities=27% Similarity=0.517 Sum_probs=138.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
.+.+||+++|.+|||||||++++..+.+...+.++.+ +........++..+.+.+|||||++.+...+..++..+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 4679999999999999999999998888777777775 444455667788889999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccccC-HHHHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+..+... .....+++..+++++++||++|.|++++|++|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 160 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL 160 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999988887653 58999999999999865544 44568888899999999999999999999999
Q ss_pred HHHHhc
Q 030504 168 ARKLAG 173 (176)
Q Consensus 168 ~~~i~~ 173 (176)
++.+.+
T Consensus 161 ~~~~~~ 166 (189)
T 4dsu_A 161 VREIRK 166 (189)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 65
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=2.4e-35 Score=191.72 Aligned_cols=161 Identities=28% Similarity=0.507 Sum_probs=139.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
+.+||+++|++|+|||||++++..+.+...+.++.+... ......++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 579999999999999999999999988877777776433 5556677888899999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
|||++++.+++.+..|+..+.... .+.|+++|+||+|+.... . ..+...+++..+++++++||++|.|++++|+++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 160 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI 160 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence 999999999999998888877654 589999999999987532 2 334567888889999999999999999999999
Q ss_pred HHHHhc
Q 030504 168 ARKLAG 173 (176)
Q Consensus 168 ~~~i~~ 173 (176)
++.+.+
T Consensus 161 ~~~~~~ 166 (167)
T 1kao_A 161 VRQMNY 166 (167)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 998764
No 66
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=5.1e-35 Score=190.27 Aligned_cols=160 Identities=19% Similarity=0.251 Sum_probs=115.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
.+||+++|.+|||||||++++.+.... ...++.+.++ ......++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 589999999999999999997754443 4455666555 34556788889999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
||++++.+++.+..|+..+.... ++.|+++|+||+|+.+.. . ..+...++...+++++++||++|.|++++|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence 99999999999999988887653 589999999999997533 2 3345678888899999999999999999999999
Q ss_pred HHHhcC
Q 030504 169 RKLAGS 174 (176)
Q Consensus 169 ~~i~~~ 174 (176)
+.+.++
T Consensus 160 ~~~~~~ 165 (166)
T 3q72_A 160 RQIRLR 165 (166)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 988754
No 67
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=2.7e-35 Score=193.06 Aligned_cols=162 Identities=20% Similarity=0.292 Sum_probs=127.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccc--cccccccccccccEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--FGGLRDGYYIHGQCA 89 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--~~~~~~~~~~~~~~~ 89 (176)
..+||+++|++|||||||++++..+.+... .++.|.+.....+..++..+.+.+|||||++. +......+++.+|++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccc-cCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 579999999999999999999888776544 34566666666777788889999999999987 566677888999999
Q ss_pred EEEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCcc-cc-CHHHHHHHHHcCCeEEEeccCCCCChHHHHH
Q 030504 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (176)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 165 (176)
++|||++++.+++.+..|+..+... .++.|+++|+||+|+... .. ..+...++...+++++++||++|.|++++|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 161 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFE 161 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Confidence 9999999999999999998877764 258999999999999753 23 2345577788899999999999999999999
Q ss_pred HHHHHHhcC
Q 030504 166 YLARKLAGS 174 (176)
Q Consensus 166 ~l~~~i~~~ 174 (176)
+|++.+.++
T Consensus 162 ~l~~~~~~~ 170 (175)
T 2nzj_A 162 GVVRQLRLR 170 (175)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999987643
No 68
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=1.7e-34 Score=187.43 Aligned_cols=161 Identities=28% Similarity=0.514 Sum_probs=139.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
+.+||+++|.+|+|||||++++..+.+...+.++.+... ......++..+.+.+||+||++.+...+..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 80 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence 468999999999999999999998888777777766433 4455667788899999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhcC--CCCEEEEEeCCCCCcccc-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNRQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~liv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
|||++++.+++.+..|+..+..... +.|+++|+||+|+..+.. ..+...+++..+++++++||+++.|++++|++++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (166)
T 2ce2_X 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999999888877653 899999999999976443 3455678888899999999999999999999999
Q ss_pred HHHhc
Q 030504 169 RKLAG 173 (176)
Q Consensus 169 ~~i~~ 173 (176)
+.+.+
T Consensus 161 ~~~~~ 165 (166)
T 2ce2_X 161 REIRQ 165 (166)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 98865
No 69
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=100.00 E-value=6.5e-36 Score=197.24 Aligned_cols=162 Identities=28% Similarity=0.450 Sum_probs=124.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
...+||+++|.+|+|||||++++..+.+...+.++.+..+. .....++..+.+.+|||||++.+...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 46799999999999999999999999887777777764432 23344556788899999999999999999999999999
Q ss_pred EEEeCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCccc------------cCHHHHHHHHHcCC-eEEEeccCC
Q 030504 91 IMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ------------VKAKQVTFHRKKNL-QYYEISAKS 156 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~------------~~~~~~~~~~~~~~-~~~~~S~~~ 156 (176)
+|||++++.+++.+. .|+..+....++.|+++|+||+|+.... ...+...+++..++ +++++||++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKS 164 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCC
Confidence 999999999999987 6888888777789999999999986532 23345677888886 999999999
Q ss_pred CCChHHHHHHHHHHHhc
Q 030504 157 NYNFEKPFLYLARKLAG 173 (176)
Q Consensus 157 ~~~v~~~~~~l~~~i~~ 173 (176)
|.|++++|+++++.+.+
T Consensus 165 ~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 165 QENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp CTTHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999998864
No 70
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=6e-35 Score=192.06 Aligned_cols=156 Identities=21% Similarity=0.384 Sum_probs=129.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
++.+||+++|.+|||||||++++..+.+.. +.++.+..+ ...+..++..+.+.+|||+|+++ ..+++++|+++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 578999999999999999999999998876 677777444 45566777889999999999886 46778899999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc----CCCCEEEEEeCCCCCc---ccc-CHHHHHHHHHc-CCeEEEeccCCCCChH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN---RQV-KAKQVTFHRKK-NLQYYEISAKSNYNFE 161 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~liv~nK~Dl~~---~~~-~~~~~~~~~~~-~~~~~~~S~~~~~~v~ 161 (176)
+|||++++.+++.+..|+..+.... ++.|+++|+||+|+.. +.. ..+...+++.. +++++++||++|.|++
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 157 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD 157 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence 9999999999999998776665442 5789999999999942 223 33455677665 6899999999999999
Q ss_pred HHHHHHHHHHhc
Q 030504 162 KPFLYLARKLAG 173 (176)
Q Consensus 162 ~~~~~l~~~i~~ 173 (176)
++|+++++.+.+
T Consensus 158 ~lf~~l~~~~~~ 169 (178)
T 2iwr_A 158 RVFQEVAQKVVT 169 (178)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 71
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=1.4e-35 Score=200.96 Aligned_cols=163 Identities=33% Similarity=0.536 Sum_probs=141.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCc----------EEEEEEEeCCCccccccccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG----------KIRFYCWDTAGQEKFGGLRD 80 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~D~~g~~~~~~~~~ 80 (176)
...+||+++|.+|||||||+++++.+.+...+.++.+.++....+..++. .+.+.+|||||++.+...+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 35699999999999999999999998888888888887777766666655 78999999999999999999
Q ss_pred cccccccEEEEEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCC
Q 030504 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKS 156 (176)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~ 156 (176)
.+++.+|++++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.... . ..+...+++..+++++++||++
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 182 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAAT 182 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTT
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCC
Confidence 99999999999999999999999998888776543 589999999999997633 2 3456688888999999999999
Q ss_pred CCChHHHHHHHHHHHhc
Q 030504 157 NYNFEKPFLYLARKLAG 173 (176)
Q Consensus 157 ~~~v~~~~~~l~~~i~~ 173 (176)
+.|++++|++|++.+.+
T Consensus 183 g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 183 GQNVEKAVETLLDLIMK 199 (217)
T ss_dssp TBTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999998764
No 72
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=7.4e-35 Score=194.52 Aligned_cols=162 Identities=28% Similarity=0.407 Sum_probs=139.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
.+.+||+++|.+|||||||++++..+.+...+.++.+..+ ......++..+.+.+|||||++. ...+..+++.+|+++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 5679999999999999999999999998888888887554 44466777889999999999988 778888899999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCcc-cc-CHHHHHHHHHcCCeEEEeccCCCC-ChHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNY-NFEKPFL 165 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~-~v~~~~~ 165 (176)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+... .. ..+...+++..+++++++||++|. |++++|+
T Consensus 104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~ 183 (196)
T 2atv_A 104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFY 183 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHH
Confidence 9999999999999999988887653 58999999999999763 22 345667888889999999999999 9999999
Q ss_pred HHHHHHhcC
Q 030504 166 YLARKLAGS 174 (176)
Q Consensus 166 ~l~~~i~~~ 174 (176)
+|++.+.++
T Consensus 184 ~l~~~i~~~ 192 (196)
T 2atv_A 184 ELCREVRRR 192 (196)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999988754
No 73
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=4.3e-35 Score=198.62 Aligned_cols=167 Identities=44% Similarity=0.805 Sum_probs=141.2
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecC-cEEEEEEEeCCCcccccccccccccccc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 87 (176)
.....+||+++|.+|||||||+++++.+.+...+.++.+.+.......... ..+.+.+|||||++.+...+..++..+|
T Consensus 7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (218)
T 4djt_A 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS 86 (218)
T ss_dssp ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence 345689999999999999999999998888888888888777777665543 4489999999999999999999999999
Q ss_pred EEEEEEeCCChhhhhhHHHHHHHHhhhcC-CCCEEEEEeCCCCCcc-ccC-HHHHHHHHHcCCeEEEeccCCCCChHHHH
Q 030504 88 CAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~liv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~S~~~~~~v~~~~ 164 (176)
++++|||++++.+++.+..|+..+..... +.|+++|+||+|+... ... .....++...+++++++||++|.|++++|
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 166 (218)
T 4djt_A 87 GAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF 166 (218)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Confidence 99999999999999999999988877653 5899999999999764 333 33457777889999999999999999999
Q ss_pred HHHHHHHhcCC
Q 030504 165 LYLARKLAGST 175 (176)
Q Consensus 165 ~~l~~~i~~~~ 175 (176)
.+|++.+.+.+
T Consensus 167 ~~l~~~~~~~~ 177 (218)
T 4djt_A 167 LHLARIFTGRP 177 (218)
T ss_dssp HHHHHHHHCCT
T ss_pred HHHHHHHhccc
Confidence 99999987754
No 74
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=2.5e-34 Score=190.96 Aligned_cols=165 Identities=27% Similarity=0.499 Sum_probs=130.2
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
..++.+||+++|.+|||||||++++..+.+...+.++.+... ......++..+.+.+|||||++.+...+..++..+|+
T Consensus 17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (190)
T 3con_A 17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 95 (190)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSE
T ss_pred cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCE
Confidence 345789999999999999999999998888777777765443 3455667778899999999999999999999999999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCcccc-CHHHHHHHHHcCCeEEEeccCCCCChHHHHH
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 165 (176)
+++|||++++.+++.+..|+..+.... .+.|+++|+||+|+..+.. ..+..++++..+++++++||+++.|++++|+
T Consensus 96 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 175 (190)
T 3con_A 96 FLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFY 175 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999999998988887654 3899999999999976443 3456688888899999999999999999999
Q ss_pred HHHHHHhcC
Q 030504 166 YLARKLAGS 174 (176)
Q Consensus 166 ~l~~~i~~~ 174 (176)
+|++.+.+.
T Consensus 176 ~l~~~~~~~ 184 (190)
T 3con_A 176 TLVREIRQY 184 (190)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987653
No 75
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=4.4e-37 Score=205.76 Aligned_cols=165 Identities=30% Similarity=0.556 Sum_probs=138.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
...+||+++|.+|||||||++++..+.+...+.++.+.+.....+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 45799999999999999999999988888888888888888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCcccc--CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+..... ..+...++...+++++++||+++.|++++|++|
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l 190 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 190 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 9999999999999999998887654 4789999999999975432 235668888899999999999999999999999
Q ss_pred HHHHhcCC
Q 030504 168 ARKLAGST 175 (176)
Q Consensus 168 ~~~i~~~~ 175 (176)
++.+.++.
T Consensus 191 ~~~l~~~~ 198 (199)
T 3l0i_B 191 AAEIKKRM 198 (199)
T ss_dssp TTTTTTTC
T ss_pred HHHHHHhc
Confidence 99887653
No 76
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=4.9e-36 Score=201.71 Aligned_cols=163 Identities=25% Similarity=0.396 Sum_probs=105.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcC--CCCCccccceeEEEeEEEEEecCc--EEEEEEEeCCCccccccccccccccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKKYEPTIGVEVHPLDFFTNCG--KIRFYCWDTAGQEKFGGLRDGYYIHG 86 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~ 86 (176)
...+||+++|.+|+|||||++++..+ .+...+.++.+.+.....+..++. .+.+.+|||||++.+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 45789999999999999999999888 777777888887777777777776 88999999999999999999999999
Q ss_pred cEEEEEEeCCChhhhhhHHHHHHHHhhhcC----CCCEEEEEeCCCCCc-c-cc-CHHHHHHHHHcCCeEEEeccCC-CC
Q 030504 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCE----NIPIVLCGNKVDVKN-R-QV-KAKQVTFHRKKNLQYYEISAKS-NY 158 (176)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~p~liv~nK~Dl~~-~-~~-~~~~~~~~~~~~~~~~~~S~~~-~~ 158 (176)
|++++|||++++.+++.+..|+..+..... +.|+++|+||+|+.. . .. ..+...+++..+++++++||++ +.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 177 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK 177 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 999999999999999999999998877643 899999999999976 3 33 3456788888999999999999 99
Q ss_pred ChHHHHHHHHHHHhc
Q 030504 159 NFEKPFLYLARKLAG 173 (176)
Q Consensus 159 ~v~~~~~~l~~~i~~ 173 (176)
|++++|++|++.+.+
T Consensus 178 gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 178 DADAPFLSIATTFYR 192 (208)
T ss_dssp --CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999998764
No 77
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=100.00 E-value=8.6e-35 Score=195.36 Aligned_cols=161 Identities=26% Similarity=0.468 Sum_probs=135.3
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEE
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (176)
..+.+||+++|.+|||||||++++..+.+...+.++.+ +........++..+.+.+|||||++.+...+..+++.+|++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 105 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 35689999999999999999999999988877777775 34445566777889999999999999999999999999999
Q ss_pred EEEEeCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCccc--------------cCHHHHHHHHHcCC-eEEEec
Q 030504 90 IIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ--------------VKAKQVTFHRKKNL-QYYEIS 153 (176)
Q Consensus 90 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~--------------~~~~~~~~~~~~~~-~~~~~S 153 (176)
++|||++++.+++.+. .|+..+....++.|+++|+||+|+.... ...+...+++..++ +++++|
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 185 (204)
T 4gzl_A 106 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEee
Confidence 9999999999999987 7888888777899999999999987532 22345577777775 599999
Q ss_pred cCCCCChHHHHHHHHHHH
Q 030504 154 AKSNYNFEKPFLYLARKL 171 (176)
Q Consensus 154 ~~~~~~v~~~~~~l~~~i 171 (176)
|++|.|++++|+++++.+
T Consensus 186 A~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TTTCTTHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998865
No 78
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=100.00 E-value=3.6e-35 Score=194.83 Aligned_cols=161 Identities=22% Similarity=0.387 Sum_probs=131.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
.+.+||+++|.+|+|||||++++..+.+...+.++.+.++... ....+.+.+|||||++.+...+..+++.+|+++
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI----TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIV 95 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEE----EETTEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEE----EeCCEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence 4689999999999999999999999988877888888766543 235678999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHH-----HHHcCCeEEEeccCCCCChHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
+|||++++.+++.+..|+..+... ..+.|+++|+||+|+.......+.... +...+++++++||++|.|++++
T Consensus 96 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l 175 (188)
T 1zd9_A 96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDIT 175 (188)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHH
Confidence 999999999999998888877653 368999999999999764322222211 1224568999999999999999
Q ss_pred HHHHHHHHhcCC
Q 030504 164 FLYLARKLAGST 175 (176)
Q Consensus 164 ~~~l~~~i~~~~ 175 (176)
|++|++.+.++.
T Consensus 176 ~~~l~~~~~~~~ 187 (188)
T 1zd9_A 176 LQWLIQHSKSRR 187 (188)
T ss_dssp HHHHHHTCC---
T ss_pred HHHHHHHHHhhc
Confidence 999999887664
No 79
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=192.84 Aligned_cols=160 Identities=21% Similarity=0.345 Sum_probs=128.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCC-CCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGE-FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (176)
.+.+||+++|.+|+|||||++++..+. +...+.++.+..... +..+ .+.+.+|||||++.+...+..+++++|++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEK--FKSS--SLSFTVFDMSGQGRYRNLWEHYYKEGQAI 94 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEE--EECS--SCEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEE--EEEC--CEEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 468999999999999999999988777 566677777744333 3333 47899999999999999999999999999
Q ss_pred EEEEeCCChhhhhhHHHHHHHHhhhc----CCCCEEEEEeCCCCCccccCHHHHHHHH-----HcCCeEEEeccCCCCCh
Q 030504 90 IIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNF 160 (176)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~liv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~v 160 (176)
++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+.....+..+.+. ..+++++++||++|.|+
T Consensus 95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 174 (190)
T 2h57_A 95 IFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGL 174 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCH
Confidence 99999999999999988888776543 5899999999999976544344444432 24678999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 030504 161 EKPFLYLARKLAGS 174 (176)
Q Consensus 161 ~~~~~~l~~~i~~~ 174 (176)
+++|++|.+.+.+-
T Consensus 175 ~~l~~~l~~~i~~~ 188 (190)
T 2h57_A 175 QEGVDWLQDQIQTV 188 (190)
T ss_dssp HHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987653
No 80
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2e-34 Score=188.26 Aligned_cols=162 Identities=25% Similarity=0.418 Sum_probs=136.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
+.+||+++|.+|+|||||++++..+.+...+.++.+.+.. .....+...+.+.+|||||++.+...+..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 4699999999999999999999988887777777765443 344567778899999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhc---CCCCEEEEEeCCCCCccc-cC-HHHHHHHHHcCCeEEEeccCCCCChHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~liv~nK~Dl~~~~-~~-~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 166 (176)
|||++++.+++.+..|+..+.+.. ++.|+++|+||+|+.... .. .+...++...+++++++||++|.|++++|++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence 999999999999888887776643 589999999999997543 22 3456777888999999999999999999999
Q ss_pred HHHHHhcC
Q 030504 167 LARKLAGS 174 (176)
Q Consensus 167 l~~~i~~~ 174 (176)
|++.+.++
T Consensus 161 l~~~~~~~ 168 (172)
T 2erx_A 161 LLNLEKRR 168 (172)
T ss_dssp HHHTCCSS
T ss_pred HHHHHhhh
Confidence 99877654
No 81
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.2e-34 Score=192.43 Aligned_cols=163 Identities=26% Similarity=0.416 Sum_probs=139.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
...+||+++|.+|||||||++++..+.+...+.++.+.+.. .....+...+.+.+|||||++.+...+..++..+|+++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 46799999999999999999999999888777777765443 34556777889999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc---CCCCEEEEEeCCCCCccccC-HHHHHHHHHcCCeEEEeccCCCCChHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~liv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 166 (176)
+|||++++.+++.+..|+..+.... ++.|+++|+||+|+..+... .+...++...+++++++||++|.|++++|++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 164 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQE 164 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Confidence 9999999999999888877766543 47899999999999865443 3456778888999999999999999999999
Q ss_pred HHHHHhcC
Q 030504 167 LARKLAGS 174 (176)
Q Consensus 167 l~~~i~~~ 174 (176)
|++.+.++
T Consensus 165 l~~~~~~~ 172 (199)
T 2gf0_A 165 LLTLETRR 172 (199)
T ss_dssp HHHHCSSS
T ss_pred HHHHHhhh
Confidence 99987654
No 82
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=100.00 E-value=1.9e-34 Score=190.96 Aligned_cols=159 Identities=17% Similarity=0.267 Sum_probs=130.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
.+.+||+++|.+|||||||++++..+. ...+.++.+........ ..+.+.+|||||++.+...+..+++++|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~~~~----~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIKTLEH----RGFKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEEEEEE----TTEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceEEEEE----CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 578999999999999999999998877 66677888755444333 3578999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHHH-----HHcCCeEEEeccCCCCChHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v~~~ 163 (176)
+|+|++++.+++.+..|+..+... .++.|+++|+||+|+.......+..+.. ...+++++++||++|.|++++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 170 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPG 170 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHH
Confidence 999999999999998888777654 3689999999999997654333322222 235678999999999999999
Q ss_pred HHHHHHHHhcC
Q 030504 164 FLYLARKLAGS 174 (176)
Q Consensus 164 ~~~l~~~i~~~ 174 (176)
|+++++.+.++
T Consensus 171 ~~~l~~~i~~~ 181 (186)
T 1ksh_A 171 IDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhc
Confidence 99999988764
No 83
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2e-34 Score=194.04 Aligned_cols=164 Identities=20% Similarity=0.304 Sum_probs=131.1
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCC--CCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccc-cccccccccccc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGE--FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-FGGLRDGYYIHG 86 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~ 86 (176)
....+||+++|.+|||||||+++|.... +...+ ++.|.+.....+.+++..+.+.+|||+|++. +..+...+++.+
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a 112 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG 112 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence 3467999999999999999999987543 23332 3455565566667788888999999999876 455677788899
Q ss_pred cEEEEEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCcc-ccC-HHHHHHHHHcCCeEEEeccCCCCChHH
Q 030504 87 QCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
+++++|||++++.+|+.+..|...+... .++.|+++|+||+|+... ... .+...++...++++++|||++|.|+++
T Consensus 113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~e 192 (211)
T 2g3y_A 113 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKE 192 (211)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999999999888877653 358999999999999753 333 334567788899999999999999999
Q ss_pred HHHHHHHHHhcC
Q 030504 163 PFLYLARKLAGS 174 (176)
Q Consensus 163 ~~~~l~~~i~~~ 174 (176)
+|+++++.+..+
T Consensus 193 lf~~l~~~i~~~ 204 (211)
T 2g3y_A 193 LFEGIVRQVRLR 204 (211)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999987543
No 84
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=9.2e-35 Score=192.68 Aligned_cols=160 Identities=23% Similarity=0.312 Sum_probs=126.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
.+.+||+++|.+|||||||++++..+.+. .+.+|.+.+.... .. ..+.+.+|||||++++...+..+++++|+++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~--~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEEI--VI--NNTRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCEEE--EE--TTEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccceEEE--EE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999988876 5677776443333 33 3478999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHHH-----HHcCCeEEEeccCCCCChHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v~~~ 163 (176)
+|+|++++.+++.+..|+..+... ..+.|+++|+||+|+.+.....+..+.. +..+++++++||++|.|++++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 168 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQG 168 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHH
Confidence 999999999999999988888764 3689999999999997644333333322 234678999999999999999
Q ss_pred HHHHHHHHhcCC
Q 030504 164 FLYLARKLAGST 175 (176)
Q Consensus 164 ~~~l~~~i~~~~ 175 (176)
|++|++.+.+.+
T Consensus 169 ~~~l~~~~~~~~ 180 (187)
T 1zj6_A 169 LEWMMSRLKIRL 180 (187)
T ss_dssp HHHHHHHHCC--
T ss_pred HHHHHHHHHHHh
Confidence 999999887654
No 85
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=100.00 E-value=4.1e-35 Score=193.45 Aligned_cols=158 Identities=22% Similarity=0.319 Sum_probs=125.6
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccccccccccc
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 87 (176)
+...+.+||+++|.+|||||||++++..+.+ ..+.++.|...... .. ..+.+.+|||||++.+...+..+++.+|
T Consensus 16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~~~--~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 90 (181)
T 2h17_A 16 PRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEI--VI--NNTRFLMWDIGGQESLRSSWNTYYTNTE 90 (181)
T ss_dssp -----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCEEE--EE--TTEEEEEEEESSSGGGTCGGGGGGTTCC
T ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeEEE--EE--CCEEEEEEECCCCHhHHHHHHHHhccCC
Confidence 3445789999999999999999999998887 55677777554333 33 3478999999999999999999999999
Q ss_pred EEEEEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHHH-----HHcCCeEEEeccCCCCCh
Q 030504 88 CAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNF 160 (176)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v 160 (176)
++++|+|++++.+++.+..|+..+... ..+.|+++|+||+|+.......+..+.. ...+++++++||++|.|+
T Consensus 91 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi 170 (181)
T 2h17_A 91 FVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGL 170 (181)
T ss_dssp EEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCH
Confidence 999999999999999998888877654 3689999999999997643333332222 234578999999999999
Q ss_pred HHHHHHHHHH
Q 030504 161 EKPFLYLARK 170 (176)
Q Consensus 161 ~~~~~~l~~~ 170 (176)
+++|++|++.
T Consensus 171 ~~l~~~l~~~ 180 (181)
T 2h17_A 171 CQGLEWMMSR 180 (181)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhh
Confidence 9999999864
No 86
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=100.00 E-value=1.7e-34 Score=193.05 Aligned_cols=158 Identities=17% Similarity=0.235 Sum_probs=121.1
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
...+.+||+++|++|||||||++++..+.+. .+.+|.+.+.. .+..++ +.+.+|||||++.++..+..+++.+|+
T Consensus 21 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~~--~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 95 (198)
T 1f6b_A 21 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSE--ELTIAG--MTFTTFDLGGHIQARRVWKNYLPAING 95 (198)
T ss_dssp CTTCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCE--EEEETT--EEEEEEEECC----CCGGGGGGGGCSE
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCceeE--EEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCE
Confidence 3456789999999999999999998877764 45667665432 333443 789999999999999999999999999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHHHHH-----------------cCCeE
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRK-----------------KNLQY 149 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~-----------------~~~~~ 149 (176)
+++|+|++++.+++.+..|+..+.+. ..+.|+++|+||+|+.......+..+++.. .++++
T Consensus 96 ~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (198)
T 1f6b_A 96 IVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEV 175 (198)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence 99999999999999999988887654 368999999999999864333444444432 34689
Q ss_pred EEeccCCCCChHHHHHHHHHHH
Q 030504 150 YEISAKSNYNFEKPFLYLARKL 171 (176)
Q Consensus 150 ~~~S~~~~~~v~~~~~~l~~~i 171 (176)
++|||++|.|++++|++|++.+
T Consensus 176 ~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 176 FMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp EECBTTTTBSHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 9999999999999999998754
No 87
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=100.00 E-value=1.6e-33 Score=184.01 Aligned_cols=159 Identities=21% Similarity=0.341 Sum_probs=129.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
.+.+||+++|.+|+|||||++++..+.+.. +.++.+........ ....+.+|||||++.+...+..+++.+|+++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNVETVTY----KNLKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEEEEEE----TTEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccceEEEEE----CCEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 457999999999999999999998888754 56677655443333 3678999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHH-----HHHHHcCCeEEEeccCCCCChHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~-----~~~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
+|+|++++.+++....|+..+... ..+.|+++|+||+|+.+.....+.. ..+...+++++++||++|.|++++
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 159 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEA 159 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHH
Confidence 999999999999888888777654 2689999999999997653322222 223345678999999999999999
Q ss_pred HHHHHHHHhcC
Q 030504 164 FLYLARKLAGS 174 (176)
Q Consensus 164 ~~~l~~~i~~~ 174 (176)
|+++++.+.++
T Consensus 160 ~~~l~~~i~~~ 170 (171)
T 1upt_A 160 MEWLVETLKSR 170 (171)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHhhc
Confidence 99999998765
No 88
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=100.00 E-value=5e-34 Score=189.67 Aligned_cols=157 Identities=18% Similarity=0.283 Sum_probs=124.6
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
...+.+||+++|++|||||||++++..+.+. .+.++.+.+.. .+..++ +.+.+|||||++.++..+..+++.+|+
T Consensus 19 ~~~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 93 (190)
T 1m2o_B 19 LWNKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSE--ELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNG 93 (190)
T ss_dssp -----CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCEEE--EEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCE
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCCeE--EEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence 3456789999999999999999999888764 45677766433 333443 789999999999999999999999999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHHHH------------HcCCeEEEecc
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR------------KKNLQYYEISA 154 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~~~------------~~~~~~~~~S~ 154 (176)
+++|||++++.+++.+..|+..+... ..+.|+++|+||+|+.......+..+.+. ..++++++|||
T Consensus 94 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 173 (190)
T 1m2o_B 94 IVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV 173 (190)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence 99999999999999999888887653 36899999999999987433333333332 24578999999
Q ss_pred CCCCChHHHHHHHHHH
Q 030504 155 KSNYNFEKPFLYLARK 170 (176)
Q Consensus 155 ~~~~~v~~~~~~l~~~ 170 (176)
++|.|++++|++|++.
T Consensus 174 ~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 174 VMRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTTBSHHHHHHHHHTT
T ss_pred CcCCCHHHHHHHHHhh
Confidence 9999999999999864
No 89
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=100.00 E-value=5.3e-34 Score=189.84 Aligned_cols=161 Identities=21% Similarity=0.299 Sum_probs=123.5
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
...+.+||+++|++|||||||++++..+.+. .+.||.+..... +. ...+.+.+|||||++.+...+..+++.+|+
T Consensus 25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~~~--~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 99 (192)
T 2b6h_A 25 FGKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VE--YKNICFTVWDVGGQDKIRPLWRHYFQNTQG 99 (192)
T ss_dssp TTTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTEEEEE--EE--ETTEEEEEEECC-----CTTHHHHHHTCCE
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCceeEEE--EE--ECCEEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 3457899999999999999999998888775 345666533322 22 255789999999999999999999999999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHH-----HHHHcCCeEEEeccCCCCChH
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-----FHRKKNLQYYEISAKSNYNFE 161 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~S~~~~~~v~ 161 (176)
+++|||++++.+++.+..|+..+... .++.|+++|+||+|+.......+... .+...++++++|||++|.|++
T Consensus 100 iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 179 (192)
T 2b6h_A 100 LIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLY 179 (192)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence 99999999999999998888877653 25899999999999976432222211 122345689999999999999
Q ss_pred HHHHHHHHHHhcC
Q 030504 162 KPFLYLARKLAGS 174 (176)
Q Consensus 162 ~~~~~l~~~i~~~ 174 (176)
++|++|++.+.++
T Consensus 180 ~l~~~l~~~i~~q 192 (192)
T 2b6h_A 180 DGLDWLSHELSKR 192 (192)
T ss_dssp HHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999988654
No 90
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=100.00 E-value=4.6e-34 Score=188.48 Aligned_cols=160 Identities=17% Similarity=0.308 Sum_probs=126.0
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEE
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (176)
+...+||+++|++|||||||++++..+.+ ..+.++.|...... ..+ .+.+.+|||||++.+...+..+++.+|++
T Consensus 13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~~~~~--~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 87 (181)
T 1fzq_A 13 PDQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFNIKSV--QSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDIL 87 (181)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEEEEEE--EET--TEEEEEEECSSCGGGHHHHHHHHTTCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeEEEEE--EEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 35679999999999999999999876654 45567777544333 333 57899999999999999999999999999
Q ss_pred EEEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHH-----HHHcCCeEEEeccCCCCChHH
Q 030504 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~~v~~ 162 (176)
++|||++++.+++.+..|+..+... ..+.|+++|+||+|+.......+.... +...++++++|||++|.|+++
T Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 167 (181)
T 1fzq_A 88 IYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQD 167 (181)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHH
Confidence 9999999999999998888777543 368999999999999765433222221 123457899999999999999
Q ss_pred HHHHHHHHHhcC
Q 030504 163 PFLYLARKLAGS 174 (176)
Q Consensus 163 ~~~~l~~~i~~~ 174 (176)
+|+++++.+.++
T Consensus 168 l~~~l~~~~~~~ 179 (181)
T 1fzq_A 168 GMNWVCKNVNAK 179 (181)
T ss_dssp HHHHHHHTC---
T ss_pred HHHHHHHHHHhc
Confidence 999999987654
No 91
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=100.00 E-value=4.8e-34 Score=185.30 Aligned_cols=156 Identities=24% Similarity=0.325 Sum_probs=123.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|.+|||||||++++..+.+.. +.||.+.... . .....+.+.+|||||++.+...+..+++++|++++||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCCEE--E--EECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCceeEE--E--EEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999998888764 4667663322 2 2335578999999999999999999999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHH-----HHHHcCCeEEEeccCCCCChHHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-----FHRKKNLQYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~S~~~~~~v~~~~~~ 166 (176)
|++++.+++.+..|+..+... .++.|+++|+||+|+.+.....+... .++..+++++++||++|.|++++|++
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 155 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW 155 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHH
Confidence 999999999998888877653 36899999999999976432222211 12224568999999999999999999
Q ss_pred HHHHHhcC
Q 030504 167 LARKLAGS 174 (176)
Q Consensus 167 l~~~i~~~ 174 (176)
+++.+.++
T Consensus 156 l~~~i~~~ 163 (164)
T 1r8s_A 156 LSNQLRNQ 163 (164)
T ss_dssp HHHHC---
T ss_pred HHHHHhhc
Confidence 99988764
No 92
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=4.6e-34 Score=188.56 Aligned_cols=159 Identities=19% Similarity=0.282 Sum_probs=125.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
.+.+||+++|++|||||||++++..+.+ ..+.++.+...... .. ....+.+|||||++.+...+..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~~~~--~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVETL--SY--KNLKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCEEEE--EE--TTEEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccceEEE--EE--CCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 5789999999999999999999887777 55667776444333 23 3478999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHHH-----HHcCCeEEEeccCCCCChHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v~~~ 163 (176)
+|+|++++.+++.+..|+..+... ..+.|+++|+||+|+.+.....+..+.. ...+++++++||++|.|++++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 170 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEG 170 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHH
Confidence 999999999999999888887765 3689999999999997653333332222 123468999999999999999
Q ss_pred HHHHHHHHhcC
Q 030504 164 FLYLARKLAGS 174 (176)
Q Consensus 164 ~~~l~~~i~~~ 174 (176)
|++|++.+.++
T Consensus 171 ~~~l~~~~~~~ 181 (183)
T 1moz_A 171 LDWLIDVIKEE 181 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999988654
No 93
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=100.00 E-value=8.8e-33 Score=183.91 Aligned_cols=162 Identities=20% Similarity=0.320 Sum_probs=127.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCC--CCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccc-ccccccccccccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGE--FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-FGGLRDGYYIHGQ 87 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~~ 87 (176)
...+||+++|.+|||||||+++|.+.. +...+ ++.|.+.....+.+++..+.+.+|||+|.+. ...+...+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 457999999999999999999988533 33333 3355555556667788888999999999876 5567778888999
Q ss_pred EEEEEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCcc-ccC-HHHHHHHHHcCCeEEEeccCCCCChHHH
Q 030504 88 CAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
++++|||++++.+|+.+..|...+... .++.|+++|+||+|+... ... .+...++...++++++|||++|.|++++
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence 999999999999999999888777654 257999999999999753 222 3344667778899999999999999999
Q ss_pred HHHHHHHHhc
Q 030504 164 FLYLARKLAG 173 (176)
Q Consensus 164 ~~~l~~~i~~ 173 (176)
|.++++.+..
T Consensus 163 f~~l~~~~~~ 172 (192)
T 2cjw_A 163 FEGIVRQVRL 172 (192)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998753
No 94
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=100.00 E-value=2e-33 Score=186.50 Aligned_cols=159 Identities=19% Similarity=0.267 Sum_probs=128.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
.+.+||+++|.+|||||||++++..+.+.. +.+|.+....... . ..+.+.+|||||++.+...+..+++.+|+++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~--~--~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVNLETLQ--Y--KNISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCCEEEEE--E--TTEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceEEEEEE--E--CCEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 568999999999999999999988777653 5666664433332 2 3578999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHH-----HHHHcCCeEEEeccCCCCChHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-----FHRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
+|+|++++.+++.+..|+..+... .++.|+++|+||+|+.......+... .+...+++++++||+++.|++++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 174 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEG 174 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHH
Confidence 999999999999988888777654 25899999999999976533222221 22334678999999999999999
Q ss_pred HHHHHHHHhcC
Q 030504 164 FLYLARKLAGS 174 (176)
Q Consensus 164 ~~~l~~~i~~~ 174 (176)
|+++++.+.++
T Consensus 175 ~~~l~~~i~~~ 185 (189)
T 2x77_A 175 MDWLVERLREQ 185 (189)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 99999988765
No 95
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=100.00 E-value=5.6e-34 Score=188.52 Aligned_cols=163 Identities=18% Similarity=0.332 Sum_probs=123.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC--CCCCccccceeEEEeEEEEEe---cCcEEEEEEEeCCCcccccccccccccccc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTG--EFEKKYEPTIGVEVHPLDFFT---NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 87 (176)
.+||+++|++|||||||++++..+ .+...+.++.|.++....... ++..+.+.+|||+|++.+...+..++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999998874 455556778887776655433 235678999999999999999999999999
Q ss_pred EEEEEEeCCCh-hhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccC-----HHHHHHHHHcCCe----EEEeccCCC
Q 030504 88 CAIIMFDVTAR-LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK-----AKQVTFHRKKNLQ----YYEISAKSN 157 (176)
Q Consensus 88 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~-----~~~~~~~~~~~~~----~~~~S~~~~ 157 (176)
++++|||++++ .+++.+..|+..+....++.|+++|+||+|+...... .....+++..+++ ++++||+++
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEE 161 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSC
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccC
Confidence 99999999997 5889999999888776678999999999999764332 1223455556776 999999999
Q ss_pred C-ChHHHHHHHHHHHhcCC
Q 030504 158 Y-NFEKPFLYLARKLAGST 175 (176)
Q Consensus 158 ~-~v~~~~~~l~~~i~~~~ 175 (176)
. +++++++.+.+.+.+.+
T Consensus 162 ~~~~~~l~~~i~~~~~~~~ 180 (184)
T 2zej_A 162 SDALAKLRKTIINESLNFK 180 (184)
T ss_dssp CHHHHHHHHHHHHHHHCC-
T ss_pred chhHHHHHHHHHHHHhccc
Confidence 7 99999999999887654
No 96
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=100.00 E-value=2.6e-33 Score=187.03 Aligned_cols=162 Identities=14% Similarity=0.138 Sum_probs=120.3
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEec-CcEEEEEEEeCCCcccccccc---cccc
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLR---DGYY 83 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~---~~~~ 83 (176)
..+...+||+++|.+|||||||++++ .+.+..........+......... +..+.+.+|||+|++.+.... ..++
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 93 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVV-FHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIF 93 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHH-HSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHH
T ss_pred cccCcceEEEEECCCCCCHHHHHHHH-HhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccc
Confidence 45567899999999999999999974 455544433222222223333332 567889999999999987765 7899
Q ss_pred ccccEEEEEEeCCCh--hhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc--------c-CHHHHHHHH----HcCCe
Q 030504 84 IHGQCAIIMFDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--------V-KAKQVTFHR----KKNLQ 148 (176)
Q Consensus 84 ~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~--------~-~~~~~~~~~----~~~~~ 148 (176)
+++|++++|||++++ .+++.+..|+..+....++.|+++|+||+|+.... . ......+++ ..+++
T Consensus 94 ~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 173 (196)
T 3llu_A 94 RGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLS 173 (196)
T ss_dssp HTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEE
T ss_pred ccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcc
Confidence 999999999999997 66677777777776566799999999999986521 1 112345566 67889
Q ss_pred EEEeccCCCCChHHHHHHHHHHH
Q 030504 149 YYEISAKSNYNFEKPFLYLARKL 171 (176)
Q Consensus 149 ~~~~S~~~~~~v~~~~~~l~~~i 171 (176)
+++|||++ .|++++|.++++.+
T Consensus 174 ~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 174 FYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEEECTTS-THHHHHHHHHHHHT
T ss_pred eEEEEech-hhHHHHHHHHHHHh
Confidence 99999999 99999999999876
No 97
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=100.00 E-value=4.1e-32 Score=194.48 Aligned_cols=163 Identities=25% Similarity=0.443 Sum_probs=139.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
..+||+++|.+|+|||||++++..+.+...+.++.+... ...+..++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 568999999999999999999999988878788876444 4455677788899999999999999999999999999999
Q ss_pred EEeCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCcc-------------c-cCHHHHHHHHHcCC-eEEEeccC
Q 030504 92 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------Q-VKAKQVTFHRKKNL-QYYEISAK 155 (176)
Q Consensus 92 v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~-------------~-~~~~~~~~~~~~~~-~~~~~S~~ 155 (176)
|||++++.+++.+. .|+..+....++.|+++|+||+|+... . ...+...+++..++ ++++|||+
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 312 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 312 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCC
Confidence 99999999999887 688888777679999999999998642 1 22345677888887 99999999
Q ss_pred CCCChHHHHHHHHHHHhcCC
Q 030504 156 SNYNFEKPFLYLARKLAGST 175 (176)
Q Consensus 156 ~~~~v~~~~~~l~~~i~~~~ 175 (176)
+|.|++++|+++++.+.+.+
T Consensus 313 ~~~gi~~l~~~l~~~~~~~~ 332 (332)
T 2wkq_A 313 TQRGLKTVFDEAIRAVLCPP 332 (332)
T ss_dssp TCTTHHHHHHHHHHHHHC--
T ss_pred CCcCHHHHHHHHHHHHhcCC
Confidence 99999999999999987653
No 98
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.2e-32 Score=194.56 Aligned_cols=160 Identities=23% Similarity=0.312 Sum_probs=122.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
.+.+||+|+|.+|+|||||++++..+.+... .+|.+..... ++...+.+.+|||||++.+...+..+++.+|++|
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~~----~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi 237 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 237 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEEE----EEETTEEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEEE----EecCcEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 3568999999999999999999888876544 3555544433 2335678999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccccCHHHHHHH-----HHcCCeEEEeccCCCCChHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v~~~ 163 (176)
+|||++++.+++.+..|+..+.... ++.|+++|+||+|+.+.....+..... ...+++++++||++|.|++++
T Consensus 238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el 317 (329)
T 3o47_A 238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEG 317 (329)
T ss_dssp EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHH
T ss_pred EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHH
Confidence 9999999999999887777665443 589999999999998654333322221 223568999999999999999
Q ss_pred HHHHHHHHhcCC
Q 030504 164 FLYLARKLAGST 175 (176)
Q Consensus 164 ~~~l~~~i~~~~ 175 (176)
|++|++.+.+++
T Consensus 318 ~~~l~~~l~~~k 329 (329)
T 3o47_A 318 LDWLSNQLRNQK 329 (329)
T ss_dssp HHHHHHHHTC--
T ss_pred HHHHHHHHHhcC
Confidence 999999988764
No 99
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=100.00 E-value=5.7e-31 Score=176.06 Aligned_cols=162 Identities=33% Similarity=0.571 Sum_probs=139.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
..+||+++|++|||||||++++.+..+...+.++.|.+.....+.+++..+.+.+||++|++.++..+..+++.++++++
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 83 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL 83 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence 46899999999999999999999988887778888888877788888888999999999999998888889999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc--cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
|+|+++..+++.+..|+..+.... .+.|+++++||+|+.... ...+...++...++.++++|++++.|++++|+++.
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~ 163 (199)
T 2f9l_A 84 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNIL 163 (199)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 999999999999888887776543 478999999999997532 23456688888899999999999999999999999
Q ss_pred HHHhc
Q 030504 169 RKLAG 173 (176)
Q Consensus 169 ~~i~~ 173 (176)
+.+.+
T Consensus 164 ~~~~~ 168 (199)
T 2f9l_A 164 TEIYR 168 (199)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88754
No 100
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.8e-35 Score=197.03 Aligned_cols=160 Identities=27% Similarity=0.475 Sum_probs=133.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
...+||+++|.+|+|||||++++..+.+...+.++.+... ......++..+.+.+|||||++.+...+..+++++|+++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 4679999999999999999999998888777777765433 334455667788999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCccc--------------cCHHHHHHHHHcCC-eEEEecc
Q 030504 91 IMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ--------------VKAKQVTFHRKKNL-QYYEISA 154 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~--------------~~~~~~~~~~~~~~-~~~~~S~ 154 (176)
+|||++++.+++.+. .|+..+....++.|+++|+||+|+.... ...+...+++..++ +++++||
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA 186 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186 (204)
Confidence 999999999999887 7887777666689999999999997532 12334466777777 8999999
Q ss_pred CCCCChHHHHHHHHHHH
Q 030504 155 KSNYNFEKPFLYLARKL 171 (176)
Q Consensus 155 ~~~~~v~~~~~~l~~~i 171 (176)
++|.|++++|+++++.+
T Consensus 187 ~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 187 LTQRGLKTVFDEAIRAV 203 (204)
Confidence 99999999999998865
No 101
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=100.00 E-value=7.6e-33 Score=191.58 Aligned_cols=166 Identities=20% Similarity=0.262 Sum_probs=125.7
Q ss_pred CCCCCCeeEEEEEcCC---------CCcHHHHHHHHhc---CCCCCccccce-eEEEeEEEE--------------EecC
Q 030504 7 QTVDYPSFKLVIVGDG---------GTGKTTFVKRHLT---GEFEKKYEPTI-GVEVHPLDF--------------FTNC 59 (176)
Q Consensus 7 ~~~~~~~~~i~i~G~~---------~~GKttl~~~~~~---~~~~~~~~~~~-~~~~~~~~~--------------~~~~ 59 (176)
++.....+||+++|.+ |||||||+++|.. +.+...+.++. +.++....+ ..++
T Consensus 13 ~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 92 (255)
T 3c5h_A 13 NLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDC 92 (255)
T ss_dssp TSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC------
T ss_pred CCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCC
Confidence 3445678999999999 9999999999998 55655555554 333222211 1345
Q ss_pred cEEEEEEEe-----------------------CCCccccccccccccc---------------------cccEEEEEEeC
Q 030504 60 GKIRFYCWD-----------------------TAGQEKFGGLRDGYYI---------------------HGQCAIIMFDV 95 (176)
Q Consensus 60 ~~~~~~~~D-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~i~v~d~ 95 (176)
..+.+.+|| ++|++++...+..+++ ++|++|+|||+
T Consensus 93 ~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~ 172 (255)
T 3c5h_A 93 VECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDV 172 (255)
T ss_dssp ---CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEEC
T ss_pred cEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEEC
Confidence 678899999 6778888888888887 79999999999
Q ss_pred CCh--hhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHHHHH-cCCeEEEeccCCCCChHHHHHHHHHH
Q 030504 96 TAR--LTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRK-KNLQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 96 ~~~--~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
+++ .+++.+..|+..+... .++.|+++|+||+|+.......+...+++. .+++++++||+++.|++++|++|++.
T Consensus 173 t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~ 252 (255)
T 3c5h_A 173 SRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQL 252 (255)
T ss_dssp BC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 998 8999999998888654 368999999999999764433556667766 48899999999999999999999988
Q ss_pred Hh
Q 030504 171 LA 172 (176)
Q Consensus 171 i~ 172 (176)
+.
T Consensus 253 l~ 254 (255)
T 3c5h_A 253 ID 254 (255)
T ss_dssp HH
T ss_pred hc
Confidence 75
No 102
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.98 E-value=1.7e-30 Score=172.76 Aligned_cols=160 Identities=32% Similarity=0.569 Sum_probs=140.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
..++|+++|++|||||||++++....+...+.++.+.++....+.+++..+.+.+||++|++++...+..+++.++++++
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 107 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALL 107 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEE
Confidence 46899999999999999999999988888888999988888888888888899999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc--cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
|+|.++..+++.+..|+..+.... .+.|+++++||+|+.... .......++...++.++++|++++.|++++|+++.
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~ 187 (191)
T 1oix_A 108 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTIL 187 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999998888887765543 478999999999997532 23456788888899999999999999999999999
Q ss_pred HHH
Q 030504 169 RKL 171 (176)
Q Consensus 169 ~~i 171 (176)
+.+
T Consensus 188 ~~i 190 (191)
T 1oix_A 188 TEI 190 (191)
T ss_dssp HHH
T ss_pred HHh
Confidence 876
No 103
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.98 E-value=2.7e-31 Score=172.72 Aligned_cols=154 Identities=17% Similarity=0.199 Sum_probs=113.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc------ccccccc-
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------LRDGYYI- 84 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~~- 84 (176)
+.++|+++|++|||||||++++.+..+.....++.+.+.....+..+ ...+.+|||||++.+.. ....+++
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 79 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN--GEKFKVVDLPGVYSLTANSIDEIIARDYIIN 79 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEET--TEEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEEC--CcEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence 46899999999999999999988766644433433333333333333 35789999999987653 2345554
Q ss_pred -cccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcc-ccCHHHHHHHHHcCCeEEEeccCCCCChHH
Q 030504 85 -HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 85 -~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
+++++++|+|+++... ...|+..+.+. +.|+++|+||+|+... ....+...+++..+++++++||++|.|+++
T Consensus 80 ~~~~~~i~v~D~~~~~~---~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~~ 154 (165)
T 2wji_A 80 EKPDLVVNIVDATALER---NLYLTLQLMEM--GANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEE 154 (165)
T ss_dssp HCCSEEEEEEETTCHHH---HHHHHHHHHHT--TCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHH
T ss_pred CCCCEEEEEecCCchhH---hHHHHHHHHhc--CCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHHH
Confidence 7999999999988543 34466665543 8999999999998653 233345677788899999999999999999
Q ss_pred HHHHHHHHHh
Q 030504 163 PFLYLARKLA 172 (176)
Q Consensus 163 ~~~~l~~~i~ 172 (176)
+|+++++.+.
T Consensus 155 l~~~l~~~~~ 164 (165)
T 2wji_A 155 LKKAISIAVK 164 (165)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 104
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.97 E-value=4.7e-31 Score=178.26 Aligned_cols=158 Identities=18% Similarity=0.188 Sum_probs=113.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCc-EEEEEEEeCCCcccccc-ccccccccccE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFGG-LRDGYYIHGQC 88 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~~-~~~~~~~~~~~ 88 (176)
.+.+||+++|.+|||||||++++..+.+...+.++. ..... +..++. .+.+.+|||||++.+.. .+..+++.+|+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT-DSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCS-CEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcc-eeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 467999999999999999999999998877765443 23332 444443 68899999999999887 78888999999
Q ss_pred EEEEEeCCChh-hhhhHHHHHH-HHhhh---cCCCCEEEEEeCCCCCccccCHHHHHH----------------------
Q 030504 89 AIIMFDVTARL-TYKNVPTWHR-DLCRV---CENIPIVLCGNKVDVKNRQVKAKQVTF---------------------- 141 (176)
Q Consensus 89 ~i~v~d~~~~~-s~~~~~~~~~-~~~~~---~~~~p~liv~nK~Dl~~~~~~~~~~~~---------------------- 141 (176)
+++|||+++.. ++.....++. .+... ..+.|+++|+||+|+..........+.
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~ 161 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS 161 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence 99999999854 4555554433 33321 247899999999999764322211111
Q ss_pred --------------HH-Hc--CCeEEEeccCCC------CChHHHHHHHHHHH
Q 030504 142 --------------HR-KK--NLQYYEISAKSN------YNFEKPFLYLARKL 171 (176)
Q Consensus 142 --------------~~-~~--~~~~~~~S~~~~------~~v~~~~~~l~~~i 171 (176)
+. .. ++.|++|||++| .|++++|+||++.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 01 11 678999999999 99999999998753
No 105
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.97 E-value=1.1e-30 Score=196.13 Aligned_cols=160 Identities=20% Similarity=0.288 Sum_probs=128.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
...+||+++|.+|||||||++++..+.+.. +.+|.+.+..... ...+.+.+|||+|++.+...+..+++++|++|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~~~~~----~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVETVT----YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEEEEE----SSSCEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccceeEEEEE----eCCEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 467999999999999999999999888654 4567776655432 35678999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHH-----HHHcCCeEEEeccCCCCChHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
+|||++++.+++.+..|+..+... ..++|+++|+||+|+.......+.... +...++++++|||++|.|++++
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 474 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEG 474 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHH
T ss_pred EEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHH
Confidence 999999999999999888877553 258999999999999764433322221 1223467999999999999999
Q ss_pred HHHHHHHHhcCC
Q 030504 164 FLYLARKLAGST 175 (176)
Q Consensus 164 ~~~l~~~i~~~~ 175 (176)
|++|.+.+.+.+
T Consensus 475 ~~~l~~~~~~~~ 486 (497)
T 3lvq_E 475 LTWLTSNYKSKL 486 (497)
T ss_dssp HHHHHHHCC---
T ss_pred HHHHHHHHHhcC
Confidence 999999876543
No 106
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.97 E-value=1.1e-30 Score=171.50 Aligned_cols=159 Identities=16% Similarity=0.136 Sum_probs=118.0
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
...+.++|+++|.+|||||||++++..+.+...+.++.+.+.....+..++ ..+.+|||||++.+...+..++..+|+
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 81 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDI 81 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCE
Confidence 445789999999999999999999998888766555554444444444544 457799999999999999999999999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHH-------cC--CeEEEeccCCCCC
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK-------KN--LQYYEISAKSNYN 159 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~-------~~--~~~~~~S~~~~~~ 159 (176)
+++|+|++++...+.. .++..+.. .+.|+++|+||+|+..... .+....... .+ ++++++||++|.|
T Consensus 82 ~i~v~d~~~~~~~~~~-~~l~~~~~--~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (178)
T 2lkc_A 82 VILVVAADDGVMPQTV-EAINHAKA--ANVPIIVAINKMDKPEANP-DRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEG 157 (178)
T ss_dssp EEEEEETTCCCCHHHH-HHHHHHGG--GSCCEEEEEETTTSSCSCH-HHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHH
T ss_pred EEEEEECCCCCcHHHH-HHHHHHHh--CCCCEEEEEECccCCcCCH-HHHHHHHHhcCcChhHcCCcccEEEEecCCCCC
Confidence 9999999885322222 22233332 3899999999999976421 122222222 12 5899999999999
Q ss_pred hHHHHHHHHHHHhc
Q 030504 160 FEKPFLYLARKLAG 173 (176)
Q Consensus 160 v~~~~~~l~~~i~~ 173 (176)
++++|++|++.+..
T Consensus 158 v~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 158 LDHLLEMILLVSEM 171 (178)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhh
Confidence 99999999987654
No 107
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.97 E-value=2e-30 Score=176.89 Aligned_cols=164 Identities=12% Similarity=0.085 Sum_probs=113.8
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccc---------cc
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG---------GL 78 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~---------~~ 78 (176)
..+...++|+++|.+|||||||+++++.+.+... +..+.+..............+.+|||||+.... ..
T Consensus 24 ~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 101 (228)
T 2qu8_A 24 SINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQ--SYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTT 101 (228)
T ss_dssp SCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEE--CC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccC--CCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHH
Confidence 3445789999999999999999999988776422 222222222222222234689999999983211 11
Q ss_pred cccccccccEEEEEEeCCChhhhhh--HHHHHHHHhhhcCCCCEEEEEeCCCCCccc-cCH----HHHHHHHHcC--CeE
Q 030504 79 RDGYYIHGQCAIIMFDVTARLTYKN--VPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKA----KQVTFHRKKN--LQY 149 (176)
Q Consensus 79 ~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~-~~~----~~~~~~~~~~--~~~ 149 (176)
+..++..+|++++|||++++.+++. ...|+..+....++.|+++|+||+|+.... ... ....++...+ +++
T Consensus 102 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (228)
T 2qu8_A 102 ITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKF 181 (228)
T ss_dssp HHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEE
T ss_pred HHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceE
Confidence 2334677899999999999887752 234555555544689999999999997533 222 2345666666 899
Q ss_pred EEeccCCCCChHHHHHHHHHHHhc
Q 030504 150 YEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 150 ~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
+++||++|.|++++|++|++.+.+
T Consensus 182 ~~~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 182 SSFSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEecccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999998764
No 108
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.97 E-value=1.9e-31 Score=187.83 Aligned_cols=154 Identities=14% Similarity=0.128 Sum_probs=114.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC---ccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc---ccccccccccE
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEK---KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---LRDGYYIHGQC 88 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~~~ 88 (176)
||+++|..|||||||++++..+.... .+.+|.|.+.... +..+++++|||+|++++.. .+..+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v-----~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF-----STLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE-----CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE-----ccEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 79999999999999999866554322 2456777665432 2457899999999999974 36889999999
Q ss_pred EEEEEeCCCh--hhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc--------cCH-HHHHHHHH----cCCeEEEec
Q 030504 89 AIIMFDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--------VKA-KQVTFHRK----KNLQYYEIS 153 (176)
Q Consensus 89 ~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~--------~~~-~~~~~~~~----~~~~~~~~S 153 (176)
+|+|||++++ ...+....|+..+.+..++.|+++++||+|+.... +.. +..++++. .++.|++||
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTS 155 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTS 155 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEec
Confidence 9999999998 22233333444444456799999999999997532 111 23355554 578999999
Q ss_pred cCCCCChHHHHHHHHHHHhcC
Q 030504 154 AKSNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 154 ~~~~~~v~~~~~~l~~~i~~~ 174 (176)
|++ .+|.++|..+++.+..+
T Consensus 156 Akd-~nV~eAFs~iv~~li~~ 175 (331)
T 3r7w_B 156 IFD-HSIYEAFSRIVQKLIPE 175 (331)
T ss_dssp SSS-SHHHHHHHHHHTTSSTT
T ss_pred cCC-CcHHHHHHHHHHHHHhh
Confidence 998 59999999999887643
No 109
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.97 E-value=5.3e-30 Score=169.78 Aligned_cols=160 Identities=16% Similarity=0.186 Sum_probs=121.1
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccc------cccccc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG------GLRDGY 82 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~ 82 (176)
.+++.++|+++|++|||||||++++..+.+.....++.+.+.....+..+ +..+.+|||||++.+. ..+..+
T Consensus 3 ~~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 80 (188)
T 2wjg_A 3 SHMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN--GEKFKVVDLPGVYSLTANSIDEIIARDY 80 (188)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--TEEEEEEECCCCSCCSSSSHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeC--CcEEEEEECCCcCccccccHHHHHHHHH
Confidence 34578999999999999999999988766544444444444444444443 4778999999998774 234555
Q ss_pred cc--cccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcc-ccCHHHHHHHHHcCCeEEEeccCCCCC
Q 030504 83 YI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYN 159 (176)
Q Consensus 83 ~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~S~~~~~~ 159 (176)
+. .++++++|+|.++ ++....|+..+.. .+.|+++|+||+|+... ....+...+++..+++++++||+++.|
T Consensus 81 ~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 155 (188)
T 2wjg_A 81 IINEKPDLVVNIVDATA---LERNLYLTLQLME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMG 155 (188)
T ss_dssp HHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBS
T ss_pred HhccCCCEEEEEecchh---HHHHHHHHHHHHh--cCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCC
Confidence 54 4899999999875 4455566666655 38999999999998753 333456677888899999999999999
Q ss_pred hHHHHHHHHHHHhcCC
Q 030504 160 FEKPFLYLARKLAGST 175 (176)
Q Consensus 160 v~~~~~~l~~~i~~~~ 175 (176)
++++|+++++.+.+..
T Consensus 156 v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 156 IEELKKAISIAVKDKK 171 (188)
T ss_dssp HHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999887653
No 110
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.97 E-value=8.4e-30 Score=180.58 Aligned_cols=158 Identities=20% Similarity=0.278 Sum_probs=125.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCC---CccccceeEEEeEEEEEecCcEEEEEEEeCCCcccc-----cccccccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE---KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-----GGLRDGYY 83 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-----~~~~~~~~ 83 (176)
..+||+++|.+|||||||+++++.+... ..+.+|.+....... .. ..+.+.+|||||++.+ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~--~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLR--FL-GNMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEE--ET-TTEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEE--eC-CceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 5689999999999999999998877332 235556665554433 33 3678999999999988 77888889
Q ss_pred ccccEEEEEEeCCChhhhhhHHHHHHHH---hhhcCCCCEEEEEeCCCCCcc--c------cCHHHHHHHHHcC---CeE
Q 030504 84 IHGQCAIIMFDVTARLTYKNVPTWHRDL---CRVCENIPIVLCGNKVDVKNR--Q------VKAKQVTFHRKKN---LQY 149 (176)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~---~~~~~~~p~liv~nK~Dl~~~--~------~~~~~~~~~~~~~---~~~ 149 (176)
+++|++++|||++++.+++.+..|...+ ....++.|+++|+||+|+... . ...+...+++.++ +++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 9999999999999999999887665444 444578999999999999762 1 2244567788886 799
Q ss_pred EEeccCCCCChHHHHHHHHHHHhc
Q 030504 150 YEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 150 ~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
+++||++ .++.++|..+++.+..
T Consensus 159 ~~tSa~~-~~i~e~~~~iv~~li~ 181 (307)
T 3r7w_A 159 FPTSIWD-ESLYKAWSQIVCSLIP 181 (307)
T ss_dssp EECCTTS-SHHHHHHHHHHHTTCS
T ss_pred EEeeecC-ChHHHHHHHHHHHHcC
Confidence 9999999 8999999999886543
No 111
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.97 E-value=1.1e-29 Score=169.11 Aligned_cols=157 Identities=13% Similarity=0.180 Sum_probs=108.9
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCC----------cccccccc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG----------QEKFGGLR 79 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~ 79 (176)
....++|+++|.+|+|||||+++++.+.+...+.++.+.+........+. .+.+||||| ++.+...+
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence 34679999999999999999999988876666677777666655544433 589999999 66666667
Q ss_pred ccccccc---cEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHH-HH----HHHHcCCeEEE
Q 030504 80 DGYYIHG---QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-VT----FHRKKNLQYYE 151 (176)
Q Consensus 80 ~~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~-~~----~~~~~~~~~~~ 151 (176)
..+++.+ |++++|+|++++.++.... +...+.. .+.|+++|+||+|+......... .. +....++++++
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY--YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELIL 173 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEE
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEE
Confidence 7777766 9999999999876665432 2223333 48999999999999764432221 12 22234679999
Q ss_pred eccCCCCChHHHHHHHHHHHh
Q 030504 152 ISAKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 152 ~S~~~~~~v~~~~~~l~~~i~ 172 (176)
+||+++.|++++|++|.+.+.
T Consensus 174 ~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 174 FSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp CCTTTCTTHHHHHHHHHHHHT
T ss_pred EEccCCCCHHHHHHHHHHHhc
Confidence 999999999999999998875
No 112
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.96 E-value=2.9e-29 Score=177.84 Aligned_cols=166 Identities=17% Similarity=0.166 Sum_probs=126.4
Q ss_pred CCCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCc-EEEEEEEeCCCccccc---------
Q 030504 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFG--------- 76 (176)
Q Consensus 7 ~~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~--------- 76 (176)
.+.+++.-.|+++|.+|||||||+|++++..+.. ..+..+++........... ...+.+|||||+....
T Consensus 4 ~~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i-~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~ 82 (308)
T 3iev_A 4 HHHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSI-ISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSM 82 (308)
T ss_dssp ---CCEEEEEEEECSTTSSHHHHHHHHHTSCCSC-CCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHH
T ss_pred CCCCCCCCEEEEECCCCCcHHHHHHHHhCCCccc-cCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHH
Confidence 4566788999999999999999999988776542 2344444555444444334 6789999999986544
Q ss_pred -cccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCC-ccccCH-HHHHHHHHcC--CeEEE
Q 030504 77 -GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK-NRQVKA-KQVTFHRKKN--LQYYE 151 (176)
Q Consensus 77 -~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~-~~~~~~-~~~~~~~~~~--~~~~~ 151 (176)
.....++..+|++++|+|++++.+.+....|+..+... +.|+++|+||+|+. +..... ....+....+ ..+++
T Consensus 83 ~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~--~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~ 160 (308)
T 3iev_A 83 VEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL--NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVP 160 (308)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG--CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEE
T ss_pred HHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc--CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEE
Confidence 45566788999999999999988887777777777664 89999999999997 443333 3445566665 78999
Q ss_pred eccCCCCChHHHHHHHHHHHhcCC
Q 030504 152 ISAKSNYNFEKPFLYLARKLAGST 175 (176)
Q Consensus 152 ~S~~~~~~v~~~~~~l~~~i~~~~ 175 (176)
+||++|.|++++|+++.+.+.+.+
T Consensus 161 vSA~~g~gv~~L~~~l~~~l~~~~ 184 (308)
T 3iev_A 161 ISALKGANLDELVKTILKYLPEGE 184 (308)
T ss_dssp CBTTTTBSHHHHHHHHHHHSCBCC
T ss_pred EeCCCCCCHHHHHHHHHHhCccCC
Confidence 999999999999999999887654
No 113
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.96 E-value=1.6e-29 Score=163.42 Aligned_cols=149 Identities=21% Similarity=0.176 Sum_probs=102.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEE--eEEEEEecCcEEEEEEEeCCCcccc-------ccccccccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEV--HPLDFFTNCGKIRFYCWDTAGQEKF-------GGLRDGYYI 84 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~ 84 (176)
.||+++|.+|+|||||++++..+.+.. ..+..+.+. .......+ +..+.+|||||++.+ ...+..+++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 78 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAV-VADVPGVTRDLKEGVVETD--RGRFLLVDTGGLWSGDKWEKKIQEKVDRALE 78 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEEET--TEEEEEEECGGGCSSSSCCHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeee-ccCCCCceecceEEEEEeC--CceEEEEECCCCCCccchHHHHHHHHHHHHH
Confidence 589999999999999999988776431 122222222 23333333 347889999998873 334556788
Q ss_pred cccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCC-eEEEeccCCCCChHHH
Q 030504 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKP 163 (176)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~ 163 (176)
.+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+.+.. .+..+++ ..++ +++++||++|.|++++
T Consensus 79 ~~~~~i~v~d~~~~~~~~~-~~~~~~~~~--~~~p~ilv~nK~Dl~~~~--~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l 152 (161)
T 2dyk_A 79 DAEVVLFAVDGRAELTQAD-YEVAEYLRR--KGKPVILVATKVDDPKHE--LYLGPLY-GLGFGDPIPTSSEHARGLEEL 152 (161)
T ss_dssp TCSEEEEEEESSSCCCHHH-HHHHHHHHH--HTCCEEEEEECCCSGGGG--GGCGGGG-GGSSCSCEECBTTTTBSHHHH
T ss_pred hCCEEEEEEECCCcccHhH-HHHHHHHHh--cCCCEEEEEECcccccch--HhHHHHH-hCCCCCeEEEecccCCChHHH
Confidence 9999999999998643321 122222223 389999999999997652 2233444 5677 8999999999999999
Q ss_pred HHHHHHHH
Q 030504 164 FLYLARKL 171 (176)
Q Consensus 164 ~~~l~~~i 171 (176)
|+++++.+
T Consensus 153 ~~~l~~~l 160 (161)
T 2dyk_A 153 LEAIWERL 160 (161)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 99999875
No 114
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.96 E-value=3e-29 Score=173.58 Aligned_cols=155 Identities=13% Similarity=0.098 Sum_probs=118.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccc------cccc-
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR------DGYY- 83 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~------~~~~- 83 (176)
.+.++|+++|.+|||||||++++.++.+.....+ |.+.......+......+.+|||||+..+...+ +.++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~p--g~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWP--GVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECT--TSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCC--CceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 4679999999999999999999887665433333 334444444444445789999999998776533 4555
Q ss_pred -ccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcc-ccCHHHHHHHHHcCCeEEEeccCCCCChH
Q 030504 84 -IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (176)
Q Consensus 84 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~S~~~~~~v~ 161 (176)
..+|++++|+|+++..+. ..|...+.+. +.|+++|+||+|+... ....+...+++.++++++++||++|.|++
T Consensus 81 ~~~~d~ii~V~D~t~~~~~---~~~~~~l~~~--~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~ 155 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQS---LYLLLEILEM--EKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLE 155 (258)
T ss_dssp HSCCSEEEEEEETTSCHHH---HHHHHHHHTT--TCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHH
T ss_pred hcCCCEEEEEeCCCchhhH---HHHHHHHHhc--CCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHH
Confidence 479999999999986543 3455555554 8999999999998653 33344677888899999999999999999
Q ss_pred HHHHHHHHHHh
Q 030504 162 KPFLYLARKLA 172 (176)
Q Consensus 162 ~~~~~l~~~i~ 172 (176)
++|+++.+.+.
T Consensus 156 el~~~i~~~~~ 166 (258)
T 3a1s_A 156 ELKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999998765
No 115
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.96 E-value=6.8e-30 Score=193.20 Aligned_cols=164 Identities=21% Similarity=0.295 Sum_probs=122.3
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEE------E--EecCcEEEEEEEeCCCccccccccc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLD------F--FTNCGKIRFYCWDTAGQEKFGGLRD 80 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~~~D~~g~~~~~~~~~ 80 (176)
.....+||+++|.+|||||||++++..+.+...+.++.|.+..... + ..++..+.+.+|||||++.+.....
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 3567899999999999999999999998888788888887666442 1 2234468899999999999999999
Q ss_pred cccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc--CHHHHHHHHHcCCeEEEeccCCCC
Q 030504 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNY 158 (176)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~ 158 (176)
.+++.+|++++|+|+++. +....|+..+....++.|+++|+||+|+..... ..+..+++...+++++++||++|.
T Consensus 117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~ 193 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGD 193 (535)
T ss_dssp HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC----
T ss_pred HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCccc
Confidence 999999999999998754 666778888887767899999999999975332 234557777788999999999999
Q ss_pred ChHHHHHHHHHHHhcCC
Q 030504 159 NFEKPFLYLARKLAGST 175 (176)
Q Consensus 159 ~v~~~~~~l~~~i~~~~ 175 (176)
|++++|+++++.+.+.+
T Consensus 194 gi~eL~~~l~~~~~~~~ 210 (535)
T 3dpu_A 194 GVESIAKSLKSAVLHPD 210 (535)
T ss_dssp -CTTHHHHHHHHHTCTT
T ss_pred CHHHHHHHHHHHHhccc
Confidence 99999999999887653
No 116
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.96 E-value=4.9e-30 Score=170.12 Aligned_cols=155 Identities=15% Similarity=0.184 Sum_probs=113.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCC-----------ccccccccccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG-----------QEKFGGLRDGY 82 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~~~~ 82 (176)
+||+++|.+|||||||++++..+.+...+.++.. ......... .+.+||||| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t--~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVT--RKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCT--TSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcc--ceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 6899999999999999999998887766555433 333333332 588999999 56666667777
Q ss_pred ccc-ccEEEEEEeCCChhhhhhH-HHHHHH--------Hhhh--cCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCe--
Q 030504 83 YIH-GQCAIIMFDVTARLTYKNV-PTWHRD--------LCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ-- 148 (176)
Q Consensus 83 ~~~-~~~~i~v~d~~~~~s~~~~-~~~~~~--------~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~-- 148 (176)
++. ++++++|+++.+..++..+ ..|... +... ..+.|+++|+||+|+.... ......+++..+++
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~ 154 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-QEVINFLAEKFEVPLS 154 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-HHHHHHHHHHHTCCGG
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-HHHHHHHHHHhhhhhh
Confidence 776 7777777777777777665 344431 1111 2589999999999997655 33455677777764
Q ss_pred -----EEEeccCCCCChHHHHHHHHHHHhcCC
Q 030504 149 -----YYEISAKSNYNFEKPFLYLARKLAGST 175 (176)
Q Consensus 149 -----~~~~S~~~~~~v~~~~~~l~~~i~~~~ 175 (176)
++++||++|.|++++|+++++.+.+..
T Consensus 155 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 155 EIDKVFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp GHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred ccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 799999999999999999999887654
No 117
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.96 E-value=1.5e-28 Score=163.54 Aligned_cols=157 Identities=15% Similarity=0.204 Sum_probs=111.8
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCC----------ccccccc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG----------QEKFGGL 78 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~ 78 (176)
+....+||+++|.+|+|||||+++++.+.. ..+.++.+.+........+. .+.+||||| ++.+...
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (195)
T 3pqc_A 19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKI-AFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRL 94 (195)
T ss_dssp CCCTTCEEEEEEBTTSSHHHHHHHHHTSCC-SCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcCcc-ccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHH
Confidence 445678999999999999999999887763 34455655555444333332 467999999 5556666
Q ss_pred cccccccc---cEEEEEEeCCChhhh--hhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCH----HHHHHHHH-cCCe
Q 030504 79 RDGYYIHG---QCAIIMFDVTARLTY--KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----KQVTFHRK-KNLQ 148 (176)
Q Consensus 79 ~~~~~~~~---~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~----~~~~~~~~-~~~~ 148 (176)
+..+++.+ +++++|+|+++..+. ..+..|+ ... +.|+++|+||+|+.+..... +...++.. ..++
T Consensus 95 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~---~~~--~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 169 (195)
T 3pqc_A 95 VEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWM---KSL--NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYT 169 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---HHT--TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSC
T ss_pred HHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHH---HHc--CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCc
Confidence 66666655 999999999875432 2223333 332 89999999999997543222 23344444 3479
Q ss_pred EEEeccCCCCChHHHHHHHHHHHhcC
Q 030504 149 YYEISAKSNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 149 ~~~~S~~~~~~v~~~~~~l~~~i~~~ 174 (176)
++++||++|.|++++|+++.+.+.++
T Consensus 170 ~~~~Sa~~~~gv~~l~~~l~~~l~~~ 195 (195)
T 3pqc_A 170 IIPTSSVTGEGISELLDLISTLLKEN 195 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHC--
T ss_pred eEEEecCCCCCHHHHHHHHHHHhhcC
Confidence 99999999999999999999988753
No 118
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.96 E-value=1e-29 Score=166.35 Aligned_cols=155 Identities=15% Similarity=0.125 Sum_probs=108.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCC-ccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccc--------cccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGY 82 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~ 82 (176)
+.+||+++|.+|+|||||++++....... ...+..+.+.....+..++ ..+.+|||||++.+... ...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 45899999999999999999987665321 1122222233334444443 35789999998754321 1135
Q ss_pred cccccEEEEEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChH
Q 030504 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (176)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~ 161 (176)
++.+|++++|+|++++.+++ ...|+..+.+.. .+.|+++|+||+|+..... .++...+++++++||++|.|++
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-----~~~~~~~~~~~~~SA~~g~gv~ 154 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETL-----GMSEVNGHALIRLSARTGEGVD 154 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-----EEEEETTEEEEECCTTTCTTHH
T ss_pred HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchh-----hhhhccCCceEEEeCCCCCCHH
Confidence 78999999999999988776 345666665543 4799999999999864321 1222356789999999999999
Q ss_pred HHHHHHHHHHhcC
Q 030504 162 KPFLYLARKLAGS 174 (176)
Q Consensus 162 ~~~~~l~~~i~~~ 174 (176)
++|++|.+.+...
T Consensus 155 ~l~~~l~~~~~~~ 167 (172)
T 2gj8_A 155 VLRNHLKQSMGFD 167 (172)
T ss_dssp HHHHHHHHHC---
T ss_pred HHHHHHHHHhhhc
Confidence 9999999887544
No 119
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.96 E-value=6.8e-29 Score=172.76 Aligned_cols=152 Identities=14% Similarity=0.122 Sum_probs=116.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccc------cccccccc--
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG------GLRDGYYI-- 84 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~-- 84 (176)
.++|+++|.+|||||||++++.+....... ..|.++......+.. ...+.+|||||++.+. ...+.++.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~--~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 79 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGN--WPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ 79 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCS--SSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccC--CCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence 579999999999999999998876533222 235555555555555 6679999999998775 34455555
Q ss_pred cccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcc-ccCHHHHHHHHHcCCeEEEeccCCCCChHHH
Q 030504 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
.+|++++|+|+++..+. ..|...+.+. +.|+++++||+|+... ....+...+++.++++++++||++|.|++++
T Consensus 80 ~~d~vi~V~D~t~~e~~---~~~~~~l~~~--~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el 154 (272)
T 3b1v_A 80 RADSILNVVDATNLERN---LYLTTQLIET--GIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQV 154 (272)
T ss_dssp CCSEEEEEEEGGGHHHH---HHHHHHHHHT--CSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSHHHH
T ss_pred CCCEEEEEecCCchHhH---HHHHHHHHhc--CCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCHHHH
Confidence 59999999999886543 3455555553 8999999999998653 3344556788888999999999999999999
Q ss_pred HHHHHHHHh
Q 030504 164 FLYLARKLA 172 (176)
Q Consensus 164 ~~~l~~~i~ 172 (176)
|+++++.+.
T Consensus 155 ~~~i~~~~~ 163 (272)
T 3b1v_A 155 VKKAAHTTT 163 (272)
T ss_dssp HHHHHHSCT
T ss_pred HHHHHHHHh
Confidence 999988654
No 120
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.95 E-value=2.1e-28 Score=166.16 Aligned_cols=163 Identities=17% Similarity=0.044 Sum_probs=112.2
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEec-CcEEEEEEEeCCCcc----------cccc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQE----------KFGG 77 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~----------~~~~ 77 (176)
+....++|+++|.+|+|||||+++++.+........+.+.+......... .....+.+|||||.. .+..
T Consensus 25 ~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 104 (223)
T 4dhe_A 25 PPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQ 104 (223)
T ss_dssp CCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHH
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHH
Confidence 34467899999999999999999988776333334444444444444444 455678999999953 2334
Q ss_pred cccccccc---ccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCH----HHHHHHHH------
Q 030504 78 LRDGYYIH---GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----KQVTFHRK------ 144 (176)
Q Consensus 78 ~~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~----~~~~~~~~------ 144 (176)
....++.. +|++++|+|++++.+. ....++..+... +.|+++|+||+|+....... ...+....
T Consensus 105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~~--~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~ 181 (223)
T 4dhe_A 105 LLSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAPT--GKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGY 181 (223)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGGG--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHhc--CCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhccc
Confidence 44455554 7889999999875432 223344555443 89999999999997643321 12222222
Q ss_pred -cCCeEEEeccCCCCChHHHHHHHHHHHhcC
Q 030504 145 -KNLQYYEISAKSNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 145 -~~~~~~~~S~~~~~~v~~~~~~l~~~i~~~ 174 (176)
.+++++++||++|.|++++|++|.+.+.+.
T Consensus 182 ~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 182 AGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp CSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred CCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 567899999999999999999999987653
No 121
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.95 E-value=2.3e-28 Score=168.92 Aligned_cols=150 Identities=15% Similarity=0.149 Sum_probs=112.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc----------cccccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG----------LRDGYY 83 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~~~~~ 83 (176)
.+|+++|.+|||||||+|++.+........+..+.+.....+...+ ..+.+|||||+..+.. ..+.++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 3899999999999999999887765444444443344444444443 4789999999887654 445566
Q ss_pred --ccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc-cCHHHHHHHHHcCCeEEEeccCCCCCh
Q 030504 84 --IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKNLQYYEISAKSNYNF 160 (176)
Q Consensus 84 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~S~~~~~~v 160 (176)
..+|++++|+|+++..+...+ ...+.+. +.|+++|+||+|+.... .......+.+..+++++++||++|.|+
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l---~~~l~~~--~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi 154 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYL---TSQLFEL--GKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGI 154 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHH---HHHHTTS--CSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSH
T ss_pred hhCCCCEEEEEeeCCCchhHHHH---HHHHHHc--CCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCH
Confidence 789999999999986544433 3334443 89999999999987543 333455677888999999999999999
Q ss_pred HHHHHHHHHH
Q 030504 161 EKPFLYLARK 170 (176)
Q Consensus 161 ~~~~~~l~~~ 170 (176)
+++|+++.+.
T Consensus 155 ~el~~~i~~~ 164 (256)
T 3iby_A 155 PALQQSLLHC 164 (256)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhh
Confidence 9999999876
No 122
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.95 E-value=1.6e-27 Score=166.33 Aligned_cols=157 Identities=17% Similarity=0.131 Sum_probs=117.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc------cccccc--
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------LRDGYY-- 83 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~-- 83 (176)
+.+||+++|++|||||||++++.+..+.....++.+.+......... +..+.+|||||+..+.. ..+.++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYR--EKEFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEET--TEEEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEEC--CceEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 46899999999999999999988776644444444444444444443 34589999999987765 455555
Q ss_pred ccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc-cccCHHHHHHHHHcCCeEEEeccCCCCChHH
Q 030504 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
.++|++++|+|+++.. ....+...+.+. ...|+++|+||+|+.. +........+.+..+++++++|+++|.|+++
T Consensus 80 ~~~d~vi~v~D~~~~~---~~~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~ 155 (271)
T 3k53_A 80 GNADVIVDIVDSTCLM---RNLFLTLELFEM-EVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVEE 155 (271)
T ss_dssp TCCSEEEEEEEGGGHH---HHHHHHHHHHHT-TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTHHH
T ss_pred cCCcEEEEEecCCcch---hhHHHHHHHHhc-CCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCHHH
Confidence 6799999999998863 233344444443 1399999999999864 3333346677888899999999999999999
Q ss_pred HHHHHHHHHhcC
Q 030504 163 PFLYLARKLAGS 174 (176)
Q Consensus 163 ~~~~l~~~i~~~ 174 (176)
+|+++.+.+.+.
T Consensus 156 l~~~i~~~~~~~ 167 (271)
T 3k53_A 156 LKRMIALMAEGK 167 (271)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHhcc
Confidence 999999887643
No 123
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.95 E-value=2.1e-28 Score=170.83 Aligned_cols=156 Identities=15% Similarity=0.150 Sum_probs=113.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccc----------ccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL----------RDG 81 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~----------~~~ 81 (176)
+.++|+++|.+|+|||||+|++.+..+.....++...+.....+.. ....+.+|||||+..+... ...
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~--~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFST--TDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEEC--SSCEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEe--CCCceEEEECcCCCccccccccCCHHHHHHHH
Confidence 5689999999999999999998877654333333333333333333 3456789999998876632 222
Q ss_pred cc--ccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc-cCHHHHHHHHHcCCeEEEeccCCCC
Q 030504 82 YY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKNLQYYEISAKSNY 158 (176)
Q Consensus 82 ~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~S~~~~~ 158 (176)
++ ..+|++++|+|+++..... .+...+.+. +.|+++|+||+|+.... .......+.+..+++++++||++|.
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~---~~~~~l~~~--~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g~ 154 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNL---YLTLQLLEL--GIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGR 154 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHH---HHHHHHHHH--TCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGGH
T ss_pred HHhhcCCCEEEEEecCCChHHHH---HHHHHHHhc--CCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCCC
Confidence 22 6899999999999865443 334444444 89999999999987533 3334567778889999999999999
Q ss_pred ChHHHHHHHHHHHhcC
Q 030504 159 NFEKPFLYLARKLAGS 174 (176)
Q Consensus 159 ~v~~~~~~l~~~i~~~ 174 (176)
|++++|+++.+.+.+.
T Consensus 155 gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 155 GIEALKLAIDRYKANE 170 (274)
T ss_dssp HHHHHHHHHHTCCCCC
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999999998876543
No 124
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.95 E-value=2.1e-27 Score=167.54 Aligned_cols=159 Identities=18% Similarity=0.124 Sum_probs=110.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccc--------ccccccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF--------GGLRDGY 82 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~ 82 (176)
.+..+|+++|.+|||||||+|++++...... .+..+++..............+.+|||||.... ......+
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~iv-s~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~ 83 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPI-SPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEA 83 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCC-CSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeee-cCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHH
Confidence 4567899999999999999999887765421 122222333332223335678999999998763 3345567
Q ss_pred cccccEEEEEEeCCChhhhhhHHHHH-HHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHH-c-CCeEEEeccCCCCC
Q 030504 83 YIHGQCAIIMFDVTARLTYKNVPTWH-RDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK-K-NLQYYEISAKSNYN 159 (176)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~-~-~~~~~~~S~~~~~~ 159 (176)
++.+|++++|+|++++.+.. ..|+ ..+....++.|+++|+||+|+...... ..+..+. . ...++++||++|.|
T Consensus 84 l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA~~g~g 159 (301)
T 1wf3_A 84 LADVNAVVWVVDLRHPPTPE--DELVARALKPLVGKVPILLVGNKLDAAKYPEE--AMKAYHELLPEAEPRMLSALDERQ 159 (301)
T ss_dssp TSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGTTTSCEEEEEECGGGCSSHHH--HHHHHHHTSTTSEEEECCTTCHHH
T ss_pred HhcCCEEEEEEECCCCCChH--HHHHHHHHHhhcCCCCEEEEEECcccCCchHH--HHHHHHHhcCcCcEEEEeCCCCCC
Confidence 88999999999998764333 3343 445444458999999999999753320 1222222 2 35789999999999
Q ss_pred hHHHHHHHHHHHhcC
Q 030504 160 FEKPFLYLARKLAGS 174 (176)
Q Consensus 160 v~~~~~~l~~~i~~~ 174 (176)
++++++++.+.+.+.
T Consensus 160 v~~l~~~l~~~l~~~ 174 (301)
T 1wf3_A 160 VAELKADLLALMPEG 174 (301)
T ss_dssp HHHHHHHHHTTCCBC
T ss_pred HHHHHHHHHHhcccC
Confidence 999999999876543
No 125
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.94 E-value=9.9e-27 Score=172.74 Aligned_cols=158 Identities=15% Similarity=0.071 Sum_probs=98.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccc--------cccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR--------DGYY 83 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~~ 83 (176)
..++|+++|.+|+|||||+|+++..... ...+..+++.......+...++.+.+|||||++.+...+ ..++
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a-~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERA-IVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC-------------------CEEEEETTEEEEEEC--------------------CCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-ccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 3578999999999999999997765421 112233444444333333345679999999987765433 4467
Q ss_pred ccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChHHH
Q 030504 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
..+|++++|+|++++.+++.+..+...+.. ..+.|+++|+||+|+........ ..+.....++++++||++|.|++++
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~-l~~~piIvV~NK~Dl~~~~~~~~-~~l~~~~~~~~i~vSAktg~GI~eL 388 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEIRELKAA-HPAAKFLTVANKLDRAANADALI-RAIADGTGTEVIGISALNGDGIDTL 388 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHHHHHHHH-CTTSEEEEEEECTTSCTTTHHHH-HHHHHHHTSCEEECBTTTTBSHHHH
T ss_pred ccCCEEEEEEECCCCcchhhhHHHHHHHHh-cCCCCEEEEEECcCCCCccchhH-HHHHhcCCCceEEEEECCCCCHHHH
Confidence 899999999999998887654444333322 34899999999999976543222 2333333478999999999999999
Q ss_pred HHHHHHHHh
Q 030504 164 FLYLARKLA 172 (176)
Q Consensus 164 ~~~l~~~i~ 172 (176)
|++|.+.+.
T Consensus 389 ~~~i~~~~~ 397 (476)
T 3gee_A 389 KQHMGDLVK 397 (476)
T ss_dssp HHHHTHHHH
T ss_pred HHHHHHHHh
Confidence 999999886
No 126
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.94 E-value=1.4e-27 Score=174.69 Aligned_cols=158 Identities=16% Similarity=0.175 Sum_probs=112.8
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEe--EEEEEecCcEEEEEEEeCCCcccccccc-------
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH--PLDFFTNCGKIRFYCWDTAGQEKFGGLR------- 79 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~D~~g~~~~~~~~------- 79 (176)
+....++|+++|..++|||||+++++...+... ....+++.. ......... ..+.+|||||++.+....
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~-~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~ 107 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIV-SDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKA 107 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCcc-CCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHH
Confidence 445679999999999999999999887665311 222233333 333344433 278999999998776553
Q ss_pred ccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCC
Q 030504 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYN 159 (176)
Q Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 159 (176)
..++..+|++++|+|++.. .....|+..+.+. +.|+++|+||+|+...........+.+..+++++++||++|.|
T Consensus 108 ~~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~--~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg~g 182 (423)
T 3qq5_A 108 RRVFYRADCGILVTDSAPT---PYEDDVVNLFKEM--EIPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKG 182 (423)
T ss_dssp HHHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT--TCCEEEECCCCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCTTS
T ss_pred HHHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc--CCCEEEEEeCcCCCCccHHHHHHHHHHHcCCCEEEEECCCCCC
Confidence 3467889999999998333 2334566666665 8999999999999876666555666677889999999999999
Q ss_pred hHHHHHHHHHHHhc
Q 030504 160 FEKPFLYLARKLAG 173 (176)
Q Consensus 160 v~~~~~~l~~~i~~ 173 (176)
++++|++|.+.+.+
T Consensus 183 I~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 183 FDDIGKTISEILPG 196 (423)
T ss_dssp TTTHHHHHHHHSCC
T ss_pred HHHHHHHHHHhhhh
Confidence 99999999998844
No 127
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.94 E-value=9.9e-26 Score=162.82 Aligned_cols=161 Identities=19% Similarity=0.147 Sum_probs=117.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc---------cccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---------LRDG 81 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---------~~~~ 81 (176)
...++|+++|.+|||||||++++..........+.. +..............+.+|||||...... ....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFT--TRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTC--SSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCe--eeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 467899999999999999999987665322111111 11111112222356789999999754321 1113
Q ss_pred ccccccEEEEEEeCCChh--hhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCC
Q 030504 82 YYIHGQCAIIMFDVTARL--TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYN 159 (176)
Q Consensus 82 ~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 159 (176)
+...+|++++|+|++++. +++....|+..+.....+.|+++|+||+|+.......+...++...+++++++||++|+|
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~g 322 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTG 322 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTBT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCcC
Confidence 445689999999998876 667777888877765558999999999999865444455566777889999999999999
Q ss_pred hHHHHHHHHHHHhc
Q 030504 160 FEKPFLYLARKLAG 173 (176)
Q Consensus 160 v~~~~~~l~~~i~~ 173 (176)
++++++++.+.+.+
T Consensus 323 i~~l~~~i~~~l~~ 336 (357)
T 2e87_A 323 IDLVKEEIIKTLRP 336 (357)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988753
No 128
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.94 E-value=1.4e-27 Score=161.69 Aligned_cols=140 Identities=17% Similarity=0.178 Sum_probs=100.3
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCc---cccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccccccccc-
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK---YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH- 85 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~- 85 (176)
....++|+++|++|+|||||++++..+.+... +.++.+.++ ....+.+|||||++.++..+..+++.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence 45679999999999999999999988876542 333333211 45578999999999998888888877
Q ss_pred ---ccEEEEEEeCC-ChhhhhhHHHHHHHHhhh-----cCCCCEEEEEeCCCCCccccC--------HHHHHHHHHcCCe
Q 030504 86 ---GQCAIIMFDVT-ARLTYKNVPTWHRDLCRV-----CENIPIVLCGNKVDVKNRQVK--------AKQVTFHRKKNLQ 148 (176)
Q Consensus 86 ---~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~-----~~~~p~liv~nK~Dl~~~~~~--------~~~~~~~~~~~~~ 148 (176)
++++++|+|++ ++.++.....|+..+... ..+.|+++|+||+|+...... .+...++...++.
T Consensus 80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 159 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS 159 (218)
T ss_dssp GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 89999999999 888888888887777543 258999999999999764432 2233444444556
Q ss_pred EEEeccCCCC
Q 030504 149 YYEISAKSNY 158 (176)
Q Consensus 149 ~~~~S~~~~~ 158 (176)
++++|++++.
T Consensus 160 ~~~~Sa~~~~ 169 (218)
T 1nrj_B 160 LNEVERKINE 169 (218)
T ss_dssp HHC-------
T ss_pred cccccccccc
Confidence 6666666554
No 129
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.93 E-value=2.7e-25 Score=162.85 Aligned_cols=164 Identities=16% Similarity=0.098 Sum_probs=114.8
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEE-------E---------Ee---cCcEEEEEEEe
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLD-------F---------FT---NCGKIRFYCWD 68 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~-------~---------~~---~~~~~~~~~~D 68 (176)
+...+.+||+++|++++|||||++++........ ......+..... . .. ......+.+||
T Consensus 3 ~~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiD 81 (403)
T 3sjy_A 3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKK-LGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFID 81 (403)
T ss_dssp CCCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSS-SEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEE
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCcccccc-cCccccceeeccccccccceecccccccccccccccccceEEEEE
Confidence 3456789999999999999999999775432221 000010100000 0 00 11236899999
Q ss_pred CCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHH----HHHHHHH
Q 030504 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK----QVTFHRK 144 (176)
Q Consensus 69 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~----~~~~~~~ 144 (176)
|||++.+...+...+..+|++++|+|++++.++.....++..+... ...|+++++||+|+.+.....+ ..++...
T Consensus 82 tPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~ 160 (403)
T 3sjy_A 82 APGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG 160 (403)
T ss_dssp CCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CCCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999887566666666555443 2468999999999976432222 2222222
Q ss_pred c---CCeEEEeccCCCCChHHHHHHHHHHHhc
Q 030504 145 K---NLQYYEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 145 ~---~~~~~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
. +++++++||++|.|+++++++|.+.+..
T Consensus 161 ~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 161 TWAENVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp STTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred hCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 2 5789999999999999999999987653
No 130
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.93 E-value=2e-26 Score=170.40 Aligned_cols=159 Identities=14% Similarity=0.137 Sum_probs=107.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcc----------ccccccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE----------KFGGLRD 80 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~~ 80 (176)
...+||+++|.+|||||||+|+++...... ..+..|++...........+..+.+|||||+. .+.....
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~-~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 251 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVI-VSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 251 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEE-EC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCcee-ecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHH
Confidence 456999999999999999999988765421 12233334443322222233458999999973 3332222
Q ss_pred -cccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccC--HHHH-HHHH----HcCCeEEEe
Q 030504 81 -GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK--AKQV-TFHR----KKNLQYYEI 152 (176)
Q Consensus 81 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~--~~~~-~~~~----~~~~~~~~~ 152 (176)
.+++.+|++++|+|++++.+++.. .|...+.. .+.|+++|+||+|+...... .+.. .+.+ ..+++++++
T Consensus 252 ~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 328 (436)
T 2hjg_A 252 LKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFM 328 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH--cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEE
Confidence 367889999999999998877765 45555554 38999999999999764332 1221 2222 236899999
Q ss_pred ccCCCCChHHHHHHHHHHHhc
Q 030504 153 SAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 153 S~~~~~~v~~~~~~l~~~i~~ 173 (176)
||++|.|++++|.++.+.+.+
T Consensus 329 SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 329 SALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp CTTTCTTGGGHHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHHH
Confidence 999999999999999887653
No 131
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.93 E-value=6.3e-26 Score=167.84 Aligned_cols=151 Identities=17% Similarity=0.190 Sum_probs=100.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccc---------cccccccccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF---------GGLRDGYYIH 85 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~~~ 85 (176)
+|+++|.+|||||||+|++.+++.. ....+.|++...........+..+.+|||||.+.. ...+..+++.
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~-~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKA-IVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCc-eecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 7999999999999999998876642 12344555555444333333456899999997642 2345567899
Q ss_pred ccEEEEEEeCCChhhhhh--HHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHH-HHHHHHcCC-eEEEeccCCCCChH
Q 030504 86 GQCAIIMFDVTARLTYKN--VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNL-QYYEISAKSNYNFE 161 (176)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~-~~~~~~~~~-~~~~~S~~~~~~v~ 161 (176)
+|++++|+|++++.+... +..|+ ... ++|+++|+||+|+.... ..+. .+++ ..++ .++++||++|.|++
T Consensus 82 ad~il~V~D~~~~~~~~d~~i~~~l---~~~--~~p~ilv~NK~D~~~~~-~~~~~~~~~-~lg~~~~~~iSA~~g~gv~ 154 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKEDESLADFL---RKS--TVDTILVANKAENLREF-EREVKPELY-SLGFGEPIPVSAEHNINLD 154 (439)
T ss_dssp CSEEEEEEETTTCCCHHHHHHHHHH---HHH--TCCEEEEEESCCSHHHH-HHHTHHHHG-GGSSCSCEECBTTTTBSHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHH---HHc--CCCEEEEEeCCCCcccc-HHHHHHHHH-hcCCCCEEEEeccCCCCHH
Confidence 999999999987644322 22332 222 89999999999986431 1222 3333 5666 78999999999999
Q ss_pred HHHHHHHHHHhc
Q 030504 162 KPFLYLARKLAG 173 (176)
Q Consensus 162 ~~~~~l~~~i~~ 173 (176)
++++++++.+.+
T Consensus 155 ~L~~~i~~~l~~ 166 (439)
T 1mky_A 155 TMLETIIKKLEE 166 (439)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhccc
Confidence 999999988764
No 132
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.93 E-value=2.4e-25 Score=159.68 Aligned_cols=115 Identities=13% Similarity=0.125 Sum_probs=94.7
Q ss_pred cEEEEEEEeCCCccccccccccccccccEEEEEEeCCC----------hhhhhhHHHHHHHHhhh--cCCCCEEEEEeCC
Q 030504 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA----------RLTYKNVPTWHRDLCRV--CENIPIVLCGNKV 127 (176)
Q Consensus 60 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~ 127 (176)
..+.+.+|||+|++.++..|..++++++++|+|||+++ ..+++....|+..+... ..+.|+++++||+
T Consensus 191 ~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~ 270 (353)
T 1cip_A 191 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKK 270 (353)
T ss_dssp TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECc
Confidence 46789999999999999999999999999999999998 45677777787777653 4689999999999
Q ss_pred CCCcc-----------------ccCHHHHHHHH-----------HcCCeEEEeccCCCCChHHHHHHHHHHHhcC
Q 030504 128 DVKNR-----------------QVKAKQVTFHR-----------KKNLQYYEISAKSNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 128 Dl~~~-----------------~~~~~~~~~~~-----------~~~~~~~~~S~~~~~~v~~~~~~l~~~i~~~ 174 (176)
|+..+ ....+...++. ..++.+++|||+++.||+++|.++++.+.+.
T Consensus 271 DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~ 345 (353)
T 1cip_A 271 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN 345 (353)
T ss_dssp HHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHH
Confidence 98532 12234455554 3568899999999999999999999987653
No 133
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.93 E-value=2.4e-25 Score=168.94 Aligned_cols=159 Identities=14% Similarity=0.155 Sum_probs=113.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcC--CCCC-----c------cccceeEEEeEEEEEe-----cCcEEEEEEEeCCCcc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTG--EFEK-----K------YEPTIGVEVHPLDFFT-----NCGKIRFYCWDTAGQE 73 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~--~~~~-----~------~~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~g~~ 73 (176)
...||+|+|+.++|||||+++++.. .... . .....|.+........ ++..+.+.+|||||++
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 4579999999999999999998752 2111 0 1112344444333322 4457899999999999
Q ss_pred ccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCC---eEE
Q 030504 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYY 150 (176)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~ 150 (176)
.+...+...+..+|++++|+|++++.+.+....|..... .+.|+++++||+|+..........++....++ .++
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~---~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi 159 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME---MDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAV 159 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH---TTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCTTCE
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEeeeccCcccccHHHHHHHHHHHhCCCcceEE
Confidence 999888899999999999999999887777777765543 28899999999999875543334455556665 499
Q ss_pred EeccCCCCChHHHHHHHHHHHhc
Q 030504 151 EISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 151 ~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
++||++|.|++++++++++.+..
T Consensus 160 ~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 160 RCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp EECTTTCTTHHHHHHHHHHHSCC
T ss_pred EeecccCCCchhHHHHHhhcCCC
Confidence 99999999999999999988764
No 134
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.93 E-value=1.2e-25 Score=167.10 Aligned_cols=160 Identities=16% Similarity=0.142 Sum_probs=108.5
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCC----------cccccccc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG----------QEKFGGLR 79 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~ 79 (176)
....+||+++|.+++|||||+++++..... ...+..|++.......+...+..+.+||||| ++.+....
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~-~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERV-IVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTE-EECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCcc-ccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHH
Confidence 346799999999999999999998754321 1223334444433222222334789999999 45555443
Q ss_pred c-cccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccC--HHHHHHHHHc-----CCeEEE
Q 030504 80 D-GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK--AKQVTFHRKK-----NLQYYE 151 (176)
Q Consensus 80 ~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~--~~~~~~~~~~-----~~~~~~ 151 (176)
. .+++.+|++++|+|++++...+ ...|...+.+ .++|+++|+||+|+...... .+..+.++.. ++++++
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 347 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH--TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHH--cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 3 3678899999999998754322 2344444444 38999999999999764332 3334444443 589999
Q ss_pred eccCCCCChHHHHHHHHHHHhc
Q 030504 152 ISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 152 ~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
+||++|.|++++|+++.+.+.+
T Consensus 348 ~SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 348 MSALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHH
T ss_pred EcCCCCcCHHHHHHHHHHHHHH
Confidence 9999999999999999987653
No 135
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.93 E-value=4.5e-26 Score=168.49 Aligned_cols=154 Identities=20% Similarity=0.195 Sum_probs=102.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcc--------ccccccccccc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE--------KFGGLRDGYYI 84 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~~~~ 84 (176)
..+|+++|.+|||||||+|++.+.+.. ...++.|+++..........+..+.+|||||++ .+...+..+++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~-~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 368999999999999999998766553 345677777777777666666789999999986 45556677889
Q ss_pred cccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCC-eEEEeccCCCCChHHH
Q 030504 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKP 163 (176)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~ 163 (176)
.+|++++|+|+.++.+.... .+...+.. .++|+++|+||+|+..... +..+++ ..++ .++++||++|.|++++
T Consensus 82 ~ad~il~vvD~~~~~~~~d~-~~~~~l~~--~~~pvilv~NK~D~~~~~~--~~~~~~-~lg~~~~~~iSA~~g~gv~~L 155 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAADE-EVAKILYR--TKKPVVLAVNKLDNTEMRA--NIYDFY-SLGFGEPYPISGTHGLGLGDL 155 (436)
T ss_dssp HCSEEEEEEETTTCSCHHHH-HHHHHHTT--CCSCEEEEEECCCC-------CCCSSG-GGSSCCCEECBTTTTBTHHHH
T ss_pred hCCEEEEEEeCCCCCCHHHH-HHHHHHHH--cCCCEEEEEECccCccchh--hHHHHH-HcCCCCeEEEeCcCCCChHHH
Confidence 99999999999887554332 22223333 4899999999999875421 111222 3455 7899999999999999
Q ss_pred HHHHHHHHhc
Q 030504 164 FLYLARKLAG 173 (176)
Q Consensus 164 ~~~l~~~i~~ 173 (176)
++++.+.+.+
T Consensus 156 ~~~i~~~l~~ 165 (436)
T 2hjg_A 156 LDAVAEHFKN 165 (436)
T ss_dssp HHHHHHTGGG
T ss_pred HHHHHHhcCc
Confidence 9999998864
No 136
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.93 E-value=1.6e-25 Score=160.10 Aligned_cols=158 Identities=17% Similarity=0.181 Sum_probs=112.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccc----cccccccccc---ccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----FGGLRDGYYI---HGQ 87 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~~~~~~~---~~~ 87 (176)
+|+++|.++||||||++++...+......+....+.....+..++ ...+.+|||||+.. +..+...+++ +++
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 688999999999999999876543211111111111112233332 24789999999643 3334444444 599
Q ss_pred EEEEEEeCCC---hhhhhhHHHHHHHHhhhc---CCCCEEEEEeCCCCCccccCHHHHHHHHHcC--CeEEEeccCCCCC
Q 030504 88 CAIIMFDVTA---RLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSNYN 159 (176)
Q Consensus 88 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~---~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~S~~~~~~ 159 (176)
++++|+|+++ +.+++.+..|...+.... .++|+++|+||+|+.... .....+.+... ++++++||+++.|
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~--e~~~~l~~~l~~~~~v~~iSA~tg~g 316 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA--ENLEAFKEKLTDDYPVFPISAVTREG 316 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH--HHHHHHHHHCCSCCCBCCCSSCCSST
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH--HHHHHHHHHhhcCCCEEEEECCCCcC
Confidence 9999999998 778888888888777653 489999999999997543 23345555555 7899999999999
Q ss_pred hHHHHHHHHHHHhcCC
Q 030504 160 FEKPFLYLARKLAGST 175 (176)
Q Consensus 160 v~~~~~~l~~~i~~~~ 175 (176)
+++++.+|.+.+.+.+
T Consensus 317 i~eL~~~l~~~l~~~~ 332 (342)
T 1lnz_A 317 LRELLFEVANQLENTP 332 (342)
T ss_dssp THHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHhhCc
Confidence 9999999999987654
No 137
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.93 E-value=4.7e-25 Score=156.08 Aligned_cols=115 Identities=13% Similarity=0.087 Sum_probs=91.9
Q ss_pred cEEEEEEEeCCCccccccccccccccccEEEEEEeCC----------ChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCC
Q 030504 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT----------ARLTYKNVPTWHRDLCRV--CENIPIVLCGNKV 127 (176)
Q Consensus 60 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~ 127 (176)
+.+.+++|||+|+++++..|..++++++++|+|||++ +..+++....|+..+... ..+.|+++++||+
T Consensus 165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~ 244 (327)
T 3ohm_A 165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK 244 (327)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECH
T ss_pred eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECc
Confidence 5688999999999999999999999999999999765 455666666777766543 3689999999999
Q ss_pred CCCccc------------------cCHHHHHHH----------HHcCCeEEEeccCCCCChHHHHHHHHHHHhcC
Q 030504 128 DVKNRQ------------------VKAKQVTFH----------RKKNLQYYEISAKSNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 128 Dl~~~~------------------~~~~~~~~~----------~~~~~~~~~~S~~~~~~v~~~~~~l~~~i~~~ 174 (176)
|+..+. ...++.++. ...++.+++|||+++.||+++|..+.+.|.++
T Consensus 245 DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~ 319 (327)
T 3ohm_A 245 DLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL 319 (327)
T ss_dssp HHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHH
Confidence 986532 222344442 34567899999999999999999999988764
No 138
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.92 E-value=8e-26 Score=168.01 Aligned_cols=152 Identities=21% Similarity=0.205 Sum_probs=106.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeEEEeEEEEEecCcEEEEEEEeCCCcc-ccccc--------cccc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE-KFGGL--------RDGY 82 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-~~~~~--------~~~~ 82 (176)
.++|+++|.+|+|||||+|++...... ....+....+.....+.. .+..+.+|||||.. .+... ...+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~--~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVI--RGILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEE--TTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEec--CCeEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 489999999999999999998876432 111222222222333333 34578999999987 55421 2456
Q ss_pred cccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChHH
Q 030504 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
+..+|++++|+|++++.+++... +++.+ .+.|+++|+||+|+.......+...++ ..+++++++||++|.|+++
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l----~~~piivV~NK~DL~~~~~~~~~~~~~-~~~~~~i~iSAktg~Gi~e 394 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-ILERI----KNKRYLVVINKVDVVEKINEEEIKNKL-GTDRHMVKISALKGEGLEK 394 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HHHHH----TTSSEEEEEEECSSCCCCCHHHHHHHH-TCSTTEEEEEGGGTCCHHH
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HHHHh----cCCCEEEEEECcccccccCHHHHHHHh-cCCCcEEEEECCCCCCHHH
Confidence 78999999999999887665432 22222 488999999999997542222222322 2447899999999999999
Q ss_pred HHHHHHHHHh
Q 030504 163 PFLYLARKLA 172 (176)
Q Consensus 163 ~~~~l~~~i~ 172 (176)
++++|.+.+.
T Consensus 395 L~~~l~~~~~ 404 (482)
T 1xzp_A 395 LEESIYRETQ 404 (482)
T ss_dssp HHHHHHHHTH
T ss_pred HHHHHHHHHh
Confidence 9999998754
No 139
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.92 E-value=3.6e-25 Score=153.62 Aligned_cols=167 Identities=10% Similarity=0.059 Sum_probs=103.5
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcCC-CCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccc------
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGE-FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD------ 80 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~------ 80 (176)
.+....++|+|+|.+|||||||+++++... +.....++ +++...........+..+.+|||||+..+.....
T Consensus 17 ~~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i 95 (260)
T 2xtp_A 17 CASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQ-TLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEV 95 (260)
T ss_dssp ----CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSC-CCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCC-ceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHH
Confidence 345567999999999999999999988766 33333332 1222222222222446789999999876543222
Q ss_pred -----cccccccEEEEEEeCCChhh-hhhHHHHHHHHhhhcCCCCEEEEEe-CCCCCccccCH--------HHHHHHHHc
Q 030504 81 -----GYYIHGQCAIIMFDVTARLT-YKNVPTWHRDLCRVCENIPIVLCGN-KVDVKNRQVKA--------KQVTFHRKK 145 (176)
Q Consensus 81 -----~~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~p~liv~n-K~Dl~~~~~~~--------~~~~~~~~~ 145 (176)
.+++.+|++++|+|+++... ...+..++..........|.++++| |+|+....... +...+....
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~ 175 (260)
T 2xtp_A 96 QRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAAC 175 (260)
T ss_dssp HHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHT
T ss_pred HHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHHHh
Confidence 25678999999999986221 1122233332221111456666666 99997543221 122355555
Q ss_pred CCe---E--EEeccCCCCChHHHHHHHHHHHhcCC
Q 030504 146 NLQ---Y--YEISAKSNYNFEKPFLYLARKLAGST 175 (176)
Q Consensus 146 ~~~---~--~~~S~~~~~~v~~~~~~l~~~i~~~~ 175 (176)
+.. + +++||+++.|++++|+++.+.+.+.+
T Consensus 176 ~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 176 GGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence 432 2 78999999999999999999887643
No 140
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.92 E-value=8.5e-25 Score=165.73 Aligned_cols=159 Identities=17% Similarity=0.238 Sum_probs=115.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc--CCCCCc-----c------ccceeEEEeEEEEEe-----cCcEEEEEEEeCCCcc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK-----Y------EPTIGVEVHPLDFFT-----NCGKIRFYCWDTAGQE 73 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~--~~~~~~-----~------~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~g~~ 73 (176)
...||+++|+.++|||||+++++. +..... . ....|++........ ++..+.+.+|||||++
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 467999999999999999999875 222110 0 111233332221111 4456899999999999
Q ss_pred ccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCC---eEE
Q 030504 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYY 150 (176)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~ 150 (176)
.|...+...+..+|++++|+|++++.+.+....|..... .+.|+++++||+|+..........++....++ .++
T Consensus 85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~---~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~~~vi 161 (600)
T 2ywe_A 85 DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE---QDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEAI 161 (600)
T ss_dssp GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH---TTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCCGGGCE
T ss_pred hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH---CCCCEEEEEeccCccccCHHHHHHHHHHhhCCCcccEE
Confidence 998888888999999999999999888887777765543 38899999999999875543334455555665 489
Q ss_pred EeccCCCCChHHHHHHHHHHHhc
Q 030504 151 EISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 151 ~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
++||++|.|++++|+++++.+..
T Consensus 162 ~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 162 LASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp ECBTTTTBSHHHHHHHHHHHSCC
T ss_pred EEEeecCCCchHHHHHHHHhccc
Confidence 99999999999999999988754
No 141
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.92 E-value=1.8e-26 Score=172.87 Aligned_cols=157 Identities=17% Similarity=0.146 Sum_probs=112.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
+..+|+++|++++|||||++++....+.....++.+.+.....+..+ ....+.+|||||++.|..++..++..+|++++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 46789999999999999999988766544433333322222222221 23368899999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccC---HHHHHH---HHHc--CCeEEEeccCCCCChHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK---AKQVTF---HRKK--NLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~---~~~~~~---~~~~--~~~~~~~S~~~~~~v~~~ 163 (176)
|+|++++...+....| ..+.. .+.|+++++||+|+...... .+.... +... .++++++||++|.|++++
T Consensus 82 VVDa~dg~~~qt~e~l-~~~~~--~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eL 158 (537)
T 3izy_P 82 VVAADDGVMKQTVESI-QHAKD--AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMAL 158 (537)
T ss_dssp ECBSSSCCCHHHHHHH-HHHHT--TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHH
T ss_pred EEECCCCccHHHHHHH-HHHHH--cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhH
Confidence 9999987655555433 23333 37899999999999753322 111111 1111 358999999999999999
Q ss_pred HHHHHHHHh
Q 030504 164 FLYLARKLA 172 (176)
Q Consensus 164 ~~~l~~~i~ 172 (176)
|+++...+.
T Consensus 159 le~I~~l~~ 167 (537)
T 3izy_P 159 AEATIALAE 167 (537)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhhh
Confidence 999998754
No 142
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.92 E-value=6.2e-24 Score=155.89 Aligned_cols=162 Identities=15% Similarity=0.094 Sum_probs=102.5
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcC---CCCCcccc--ceeEEEeEEEEEe-------------c--C----cEEEEE
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTG---EFEKKYEP--TIGVEVHPLDFFT-------------N--C----GKIRFY 65 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~ 65 (176)
..+.+||+++|+.++|||||++++.+. .+..+..+ |....+....... + + ....+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 356799999999999999999997632 22223223 3333333222211 1 1 137899
Q ss_pred EEeCCCccccccccccccccccEEEEEEeCCChh-hhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc----CHHHHH
Q 030504 66 CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVT 140 (176)
Q Consensus 66 ~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~----~~~~~~ 140 (176)
+|||||++.+...+...+..+|++++|+|++++. ..+...+ +..+. .....|+++++||+|+.+... ..+..+
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~-l~~~~-~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~ 162 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEH-LMALE-ILGIDKIIIVQNKIDLVDEKQAEENYEQIKE 162 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHH-HHHHH-HTTCCCEEEEEECTTSSCTTTTTTHHHHHHH
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHH-HHHHH-HcCCCeEEEEEEccCCCCHHHHHHHHHHHHH
Confidence 9999999998877777788899999999999653 1222222 22222 223458999999999976432 123344
Q ss_pred HHHH---cCCeEEEeccCCCCChHHHHHHHHHHHhc
Q 030504 141 FHRK---KNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 141 ~~~~---~~~~~~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
+++. .+++++++||++|+|+++++++|.+.+..
T Consensus 163 ~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 163 FVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp HHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred HHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 5444 36789999999999999999999987653
No 143
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.92 E-value=4.1e-25 Score=158.41 Aligned_cols=114 Identities=15% Similarity=0.160 Sum_probs=90.3
Q ss_pred cEEEEEEEeCCCccccccccccccccccEEEEEEeCC----------ChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCC
Q 030504 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT----------ARLTYKNVPTWHRDLCRV--CENIPIVLCGNKV 127 (176)
Q Consensus 60 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~ 127 (176)
+.+.+.+|||+|++.++..|..++++++++|+|||++ +..+++....|+..+... .++.|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5789999999999999999999999999999999998 677888888888877653 4689999999999
Q ss_pred CCCcccc-----------------------CHHHHHHHHH----------------cCCeEEEeccCCCCChHHHHHHHH
Q 030504 128 DVKNRQV-----------------------KAKQVTFHRK----------------KNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 128 Dl~~~~~-----------------------~~~~~~~~~~----------------~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
|+..+.. ..+..+++.. ..+.+++|||+++.||+++|.+++
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9854211 1233344322 234579999999999999999999
Q ss_pred HHHhc
Q 030504 169 RKLAG 173 (176)
Q Consensus 169 ~~i~~ 173 (176)
+.+.+
T Consensus 341 ~~I~~ 345 (354)
T 2xtz_A 341 ETLRR 345 (354)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 144
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.92 E-value=1.8e-24 Score=152.72 Aligned_cols=159 Identities=17% Similarity=0.148 Sum_probs=109.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcc---------cccccccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE---------KFGGLRDG 81 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~---------~~~~~~~~ 81 (176)
.+..+|+++|++|+|||||+|++++..... ..+..+++..............+.+|||||+. .+......
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i-~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISI-TSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEE-CCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccc-cCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence 456689999999999999999988765421 11222223332222233345678999999987 33445567
Q ss_pred ccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc-cc-cCHHHHHHHHHcCC-eEEEeccCCCC
Q 030504 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQ-VKAKQVTFHRKKNL-QYYEISAKSNY 158 (176)
Q Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~-~~-~~~~~~~~~~~~~~-~~~~~S~~~~~ 158 (176)
++..+|++++|+|+++ +.....++..... ..+.|+++++||+|+.. .. .......+....++ .++++||+++.
T Consensus 85 ~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~-~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~ 160 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR---WTPDDEMVLNKLR-EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL 160 (301)
T ss_dssp CCCCEEEEEEEEETTC---CCHHHHHHHHHHH-SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT
T ss_pred HHhcCCEEEEEEeCCC---CCHHHHHHHHHHH-hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC
Confidence 7889999999999976 3333333322222 13789999999999986 22 22223345555665 79999999999
Q ss_pred ChHHHHHHHHHHHhcC
Q 030504 159 NFEKPFLYLARKLAGS 174 (176)
Q Consensus 159 ~v~~~~~~l~~~i~~~ 174 (176)
|++++++++.+.+.+.
T Consensus 161 ~v~~l~~~i~~~l~~~ 176 (301)
T 1ega_A 161 NVDTIAAIVRKHLPEA 176 (301)
T ss_dssp THHHHHHHHHTTCCBC
T ss_pred CHHHHHHHHHHhCCcC
Confidence 9999999999876543
No 145
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.92 E-value=1.9e-24 Score=161.25 Aligned_cols=157 Identities=19% Similarity=0.159 Sum_probs=108.9
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCC-------CCCccccceeEEEeE--EEEEecCcEEEEEEEeCCCcccccccc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGE-------FEKKYEPTIGVEVHP--LDFFTNCGKIRFYCWDTAGQEKFGGLR 79 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~-------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~g~~~~~~~~ 79 (176)
..++.++|+++|+.++|||||++++.... +..+.. .|.+... ..+.. ....+.+|||||++.+...+
T Consensus 15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~--~GiTi~~~~~~~~~--~~~~i~iiDtPGh~~~~~~~ 90 (482)
T 1wb1_A 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQK--RGITIDIGFSAFKL--ENYRITLVDAPGHADLIRAV 90 (482)
T ss_dssp CCCEEEEEEEEECTTSSHHHHHHHHHTTC----------------------CCCEEEE--TTEEEEECCCSSHHHHHHHH
T ss_pred hcCCCCEEEEECCCCChHHHHHHHHHCCCccccccccccccc--CccEEecceEEEEE--CCEEEEEEECCChHHHHHHH
Confidence 44568999999999999999999987655 111111 2222222 22222 34689999999999988888
Q ss_pred ccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc----CHHHHHHHHHc----CCeEEE
Q 030504 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKK----NLQYYE 151 (176)
Q Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~----~~~~~~~~~~~----~~~~~~ 151 (176)
...+..+|++++|+|+++...-+.... +..+... +.|.++++||+|+.+... ..+..+++... ++++++
T Consensus 91 ~~~~~~aD~~ilVvda~~g~~~qt~e~-l~~~~~~--~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~ 167 (482)
T 1wb1_A 91 VSAADIIDLALIVVDAKEGPKTQTGEH-MLILDHF--NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIP 167 (482)
T ss_dssp HHHTTSCCEEEEEEETTTCSCHHHHHH-HHHHHHT--TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEE
T ss_pred HHHHhhCCEEEEEEecCCCccHHHHHH-HHHHHHc--CCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEE
Confidence 888999999999999998432222222 2223332 788999999999976321 22333455544 578999
Q ss_pred eccCCCCChHHHHHHHHHHHh
Q 030504 152 ISAKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 152 ~S~~~~~~v~~~~~~l~~~i~ 172 (176)
+||++|+|+++++++|.+.+.
T Consensus 168 vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 168 ISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp CCTTTCTTHHHHHHHHHHHHH
T ss_pred EECcCCCCHHHHHHHHHHhhc
Confidence 999999999999999998764
No 146
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.92 E-value=1.8e-25 Score=165.47 Aligned_cols=154 Identities=16% Similarity=0.168 Sum_probs=99.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccc--------cccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGY 82 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~ 82 (176)
..++|+++|.+|+|||||+|+++..... ....++.+.+........ .+..+.+|||||+..+... ...+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~--~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVV--GGIPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEE--TTEEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEE--CCEEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 4578999999999999999998865432 111222222222223333 3456899999998665432 2336
Q ss_pred cccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChHH
Q 030504 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
+..+|++++|+|++++.+... ..++..+ ...|+++|+||+|+...........+. .+.+++++||++|.|+++
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l----~~~piivV~NK~Dl~~~~~~~~~~~~~--~~~~~i~iSAktg~Gi~e 373 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQV----KHRPLILVMNKIDLVEKQLITSLEYPE--NITQIVHTAAAQKQGIDS 373 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHH----TTSCEEEEEECTTSSCGGGSTTCCCCT--TCCCEEEEBTTTTBSHHH
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhc----cCCcEEEEEECCCCCcchhhHHHHHhc--cCCcEEEEECCCCCCHHH
Confidence 788999999999998765443 2333333 357999999999997654332211111 457899999999999999
Q ss_pred HHHHHHHHHhcC
Q 030504 163 PFLYLARKLAGS 174 (176)
Q Consensus 163 ~~~~l~~~i~~~ 174 (176)
++++|.+.+...
T Consensus 374 L~~~i~~~~~~~ 385 (462)
T 3geh_A 374 LETAILEIVQTG 385 (462)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHHhcc
Confidence 999999987654
No 147
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.92 E-value=2.5e-24 Score=147.69 Aligned_cols=164 Identities=9% Similarity=0.008 Sum_probs=105.3
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcc-----------cccc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE-----------KFGG 77 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-----------~~~~ 77 (176)
.....+||+++|.+|+|||||++++++........+..+.+...........+..+.+|||||.. .+..
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHH
Confidence 44578999999999999999999988877755544433444444433333344578999999943 2333
Q ss_pred ccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhh---cCCCCEEEEEeCCCCCccccC--------HHHHHHHHHcC
Q 030504 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKNRQVK--------AKQVTFHRKKN 146 (176)
Q Consensus 78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~p~liv~nK~Dl~~~~~~--------~~~~~~~~~~~ 146 (176)
....+++.+|++++|+|+++... ....++..+... ....|+++|+||+|+...... .....+.+.++
T Consensus 105 ~~~~~~~~~~~~l~v~d~~~~~~--~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~ 182 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLGRYTE--EEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFG 182 (239)
T ss_dssp HHHHTTTCCSEEEEEEETTCCSS--HHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHS
T ss_pred HHHhcCCCCcEEEEEeeCCCCCH--HHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcC
Confidence 34445667899999999875432 112223333221 125699999999998653221 24567788888
Q ss_pred CeEEEeccCCC-----CChHHHHHHHHHHHhcC
Q 030504 147 LQYYEISAKSN-----YNFEKPFLYLARKLAGS 174 (176)
Q Consensus 147 ~~~~~~S~~~~-----~~v~~~~~~l~~~i~~~ 174 (176)
..++.++...+ .++.++|..+.+.+.++
T Consensus 183 ~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~ 215 (239)
T 3lxx_A 183 DRYCALNNKATGAEQEAQRAQLLGLIQRVVREN 215 (239)
T ss_dssp SSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence 88888877644 68999999988877553
No 148
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.92 E-value=1.8e-24 Score=162.46 Aligned_cols=118 Identities=19% Similarity=0.197 Sum_probs=86.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc--CC---------------CCCcc---ccceeEEEeEEEEEecCcEEEEEEEeCCC
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT--GE---------------FEKKY---EPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~--~~---------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 71 (176)
...+|+|+|++++|||||+++++. +. ....+ ....|.+.......+....+.+.+|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 467999999999999999999861 10 00000 00123333334444444567899999999
Q ss_pred ccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcc
Q 030504 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132 (176)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~ 132 (176)
++.+...+..+++.+|++++|+|++++.+.+....| ..+... +.|+++|+||+|+...
T Consensus 92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~~--~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRLR--HTPIMTFINKMDRDTR 149 (528)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHTT--TCCEEEEEECTTSCCS
T ss_pred chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHHc--CCCEEEEEeCCCCccc
Confidence 999999999999999999999999987766665544 333333 8999999999999753
No 149
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.91 E-value=3.5e-24 Score=147.47 Aligned_cols=165 Identities=11% Similarity=0.006 Sum_probs=106.1
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcc--------cccccccc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE--------KFGGLRDG 81 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~ 81 (176)
..+.+||+++|.+|||||||+|+++.........+..+.+...........+..+.+|||||.. .+......
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 3578999999999999999999988776544333333444444444444456678999999963 22222222
Q ss_pred cc----ccccEEEEEEeCCChhh-hhhHHHHHHHHh-hhcCCCCEEEEEeCCCCCccccC--------HHHHHHHHHcCC
Q 030504 82 YY----IHGQCAIIMFDVTARLT-YKNVPTWHRDLC-RVCENIPIVLCGNKVDVKNRQVK--------AKQVTFHRKKNL 147 (176)
Q Consensus 82 ~~----~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~-~~~~~~p~liv~nK~Dl~~~~~~--------~~~~~~~~~~~~ 147 (176)
++ ..+|++++|+|+++... ...+..++..+. ....+.|+++++||.|+.+.... .....+.+.++.
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~ 177 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGG 177 (247)
T ss_dssp HHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTT
T ss_pred HHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCC
Confidence 23 88999999999985221 112222332221 11237899999999999764321 334577777888
Q ss_pred eEEEeccCC-----CCChHHHHHHHHHHHhcC
Q 030504 148 QYYEISAKS-----NYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 148 ~~~~~S~~~-----~~~v~~~~~~l~~~i~~~ 174 (176)
.++.++... +.|++++++.+.+.+.++
T Consensus 178 ~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 178 RVCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp CEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 887777654 579999999998887753
No 150
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.91 E-value=1.1e-23 Score=155.61 Aligned_cols=155 Identities=17% Similarity=0.166 Sum_probs=106.4
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcC--CCCCc---------------------------cccceeEEEeEEEEEecC
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKK---------------------------YEPTIGVEVHPLDFFTNC 59 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~ 59 (176)
...+.+||+++|++++|||||+++++.. ..... .....|++.......+..
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 4567899999999999999999998532 11110 011134455554445555
Q ss_pred cEEEEEEEeCCCccccccccccccccccEEEEEEeCCChhh---hh---hHHHHHHHHhhhcCCCC-EEEEEeCCCCCcc
Q 030504 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT---YK---NVPTWHRDLCRVCENIP-IVLCGNKVDVKNR 132 (176)
Q Consensus 60 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~p-~liv~nK~Dl~~~ 132 (176)
....+.+|||||+++|...+...+.++|++++|+|++++.. ++ .....+..+.. .+.| +++++||+|+...
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~--~~v~~iIvviNK~Dl~~~ 170 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT--AGVKHLIVLINKMDDPTV 170 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH--cCCCeEEEEeecCCCccc
Confidence 66789999999999999888888999999999999998642 21 11222222222 2666 9999999999642
Q ss_pred c--------cCHHHHHHHHHcC------CeEEEeccCCCCChHHHHH
Q 030504 133 Q--------VKAKQVTFHRKKN------LQYYEISAKSNYNFEKPFL 165 (176)
Q Consensus 133 ~--------~~~~~~~~~~~~~------~~~~~~S~~~~~~v~~~~~ 165 (176)
. ...+...+++..+ ++++++||++|.|+.++++
T Consensus 171 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 171 NWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred chHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 1 1122334444444 5799999999999999654
No 151
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.91 E-value=1.6e-24 Score=158.37 Aligned_cols=158 Identities=13% Similarity=0.064 Sum_probs=113.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCC-------CCC-------ccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGE-------FEK-------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG 77 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 77 (176)
+.+||+++|++++|||||++++.... +.. ......|.+.......++.....+.+|||||++.|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 57999999999999999999987531 110 0011234444444444555567889999999999888
Q ss_pred ccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCC-EEEEEeCCCCCccc-----cCHHHHHHHHHcC-----
Q 030504 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQ-----VKAKQVTFHRKKN----- 146 (176)
Q Consensus 78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~liv~nK~Dl~~~~-----~~~~~~~~~~~~~----- 146 (176)
.....+..+|++++|+|+++....+....| ..+... +.| +++++||+|+.+.. ...+..++++..+
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~~--~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 158 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQI--GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEE 158 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHHT--TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHHc--CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCccc
Confidence 888888999999999999986544444443 333333 788 78999999997421 1223445666655
Q ss_pred CeEEEeccCCCCC----------hHHHHHHHHHHHh
Q 030504 147 LQYYEISAKSNYN----------FEKPFLYLARKLA 172 (176)
Q Consensus 147 ~~~~~~S~~~~~~----------v~~~~~~l~~~i~ 172 (176)
++++++||++|.| +.++++.+.+.+.
T Consensus 159 ~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 159 TPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp SCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred CcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 5899999999764 8899999988765
No 152
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.91 E-value=2.3e-23 Score=152.97 Aligned_cols=163 Identities=15% Similarity=0.090 Sum_probs=110.3
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcC---CCCCcccc--ceeEEEeEEEEEe-------------c--C----cEEEE
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTG---EFEKKYEP--TIGVEVHPLDFFT-------------N--C----GKIRF 64 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~ 64 (176)
...+.++|+++|+.++|||||++++.+. .+..+..+ |....+....... + + ....+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 3457899999999999999999997732 23333333 3333333322211 0 1 13789
Q ss_pred EEEeCCCccccccccccccccccEEEEEEeCCChh-hhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc----CHHHH
Q 030504 65 YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQV 139 (176)
Q Consensus 65 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~----~~~~~ 139 (176)
.+|||||++.+.......+..+|++++|+|++++. ..+...++ ..+... ...|+++++||+|+.+... ..+..
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~~~~~~-~~~~iivviNK~Dl~~~~~~~~~~~~i~ 163 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL-MALQII-GQKNIIIAQNKIELVDKEKALENYRQIK 163 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH-HHHHHH-TCCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHH-HHHHHc-CCCcEEEEEECccCCCHHHHHHHHHHHH
Confidence 99999999998877777788899999999999653 22222222 222222 2468999999999976432 12233
Q ss_pred HHHHH---cCCeEEEeccCCCCChHHHHHHHHHHHhc
Q 030504 140 TFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 140 ~~~~~---~~~~~~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
+++.. .+++++++||++|.|+++++++|.+.+..
T Consensus 164 ~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 164 EFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp HHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 44443 46799999999999999999999987653
No 153
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.91 E-value=2.6e-24 Score=160.82 Aligned_cols=152 Identities=20% Similarity=0.189 Sum_probs=100.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcC--CCCCc---------------------------cccceeEEEeEEEEEecCcE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKK---------------------------YEPTIGVEVHPLDFFTNCGK 61 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 61 (176)
.+.+||+++|.+++|||||+++++.. .+... .....|++.......++...
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 35799999999999999999998754 11110 01112444444444555567
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhh-----HHHHHHHHhhhcCCCCEEEEEeCCCCCccc--c
Q 030504 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN-----VPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--V 134 (176)
Q Consensus 62 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~--~ 134 (176)
..+.+|||||++++...+..++.++|++++|+|++++..+.. ...+...+.......|+++|+||+|+.+.. .
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~ 190 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR 190 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHH
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHH
Confidence 789999999999999999999999999999999998753321 112222222222345799999999997621 1
Q ss_pred ----CHHHHHHHHHc-----CCeEEEeccCCCCChHH
Q 030504 135 ----KAKQVTFHRKK-----NLQYYEISAKSNYNFEK 162 (176)
Q Consensus 135 ----~~~~~~~~~~~-----~~~~~~~S~~~~~~v~~ 162 (176)
..+...++... +++++++||++|.|+++
T Consensus 191 ~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 191 FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 11222333333 46899999999999975
No 154
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.91 E-value=1.2e-23 Score=151.30 Aligned_cols=114 Identities=14% Similarity=0.104 Sum_probs=85.9
Q ss_pred cEEEEEEEeCCCccccccccccccccccEEEEEEeCCC----------hhhhhhHHHHHHHHhhh--cCCCCEEEEEeCC
Q 030504 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA----------RLTYKNVPTWHRDLCRV--CENIPIVLCGNKV 127 (176)
Q Consensus 60 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~ 127 (176)
..+.+.+|||+|++.++..|..++++++++|+|+|+++ ..++.....|+..+... ..+.|+++++||+
T Consensus 199 ~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~ 278 (362)
T 1zcb_A 199 KNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKT 278 (362)
T ss_dssp TTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEECh
Confidence 35789999999999999999999999999999999998 67888888888877653 4789999999999
Q ss_pred CCCcc------------------ccCHHHHHHH--------H---HcCCeEEEeccCCCCChHHHHHHHHHHHhc
Q 030504 128 DVKNR------------------QVKAKQVTFH--------R---KKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 128 Dl~~~------------------~~~~~~~~~~--------~---~~~~~~~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
|+..+ ....+...++ + ..++.+++|||+++.|++++|.++.+.+.+
T Consensus 279 DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~ 353 (362)
T 1zcb_A 279 DLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH 353 (362)
T ss_dssp HHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHH
Confidence 98632 1222333443 1 346789999999999999999999988764
No 155
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.91 E-value=2.2e-24 Score=153.17 Aligned_cols=115 Identities=13% Similarity=0.189 Sum_probs=91.2
Q ss_pred CcEEEEEEEeCCCccccccccccccccccEEEEEEeCC----------ChhhhhhHHHHHHHHhhh--cCCCCEEEEEeC
Q 030504 59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT----------ARLTYKNVPTWHRDLCRV--CENIPIVLCGNK 126 (176)
Q Consensus 59 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK 126 (176)
.+.+.+++|||+|+++++..|..++++++++|+|||++ +..++.+...|+..+... ..+.|+++++||
T Consensus 158 ~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK 237 (340)
T 4fid_A 158 VKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNK 237 (340)
T ss_dssp SSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEEC
T ss_pred eeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEEC
Confidence 35678999999999999999999999999999999998 567777777777776543 368999999999
Q ss_pred CCCCcccc-----------------CHHHHHHHHH---------------------------cCCeEEEeccCCCCChHH
Q 030504 127 VDVKNRQV-----------------KAKQVTFHRK---------------------------KNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 127 ~Dl~~~~~-----------------~~~~~~~~~~---------------------------~~~~~~~~S~~~~~~v~~ 162 (176)
+|+..+.. ..++..++.. ..+.+++|||++..|++.
T Consensus 238 ~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~ 317 (340)
T 4fid_A 238 MDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKR 317 (340)
T ss_dssp HHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHH
T ss_pred chhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHH
Confidence 99864211 1222222211 247889999999999999
Q ss_pred HHHHHHHHHhc
Q 030504 163 PFLYLARKLAG 173 (176)
Q Consensus 163 ~~~~l~~~i~~ 173 (176)
+|..+.+.|.+
T Consensus 318 vF~~v~~~Il~ 328 (340)
T 4fid_A 318 VFMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 156
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.90 E-value=1.7e-24 Score=160.89 Aligned_cols=156 Identities=19% Similarity=0.160 Sum_probs=103.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCC--------ccccccccccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG--------QEKFGGLRDGY 82 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g--------~~~~~~~~~~~ 82 (176)
+...+|+++|.+|||||||+|++.+.+.. ....+.|++..............+.+||||| ++.+......+
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 99 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA 99 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence 45679999999999999999998876653 3355678888888777777777899999999 56666677788
Q ss_pred cccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCC-eEEEeccCCCCChH
Q 030504 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFE 161 (176)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~ 161 (176)
+..+|++++|+|..++.+ ....++...... .++|+++|+||+|+..... ...++. ..++ ..+++||++|.|+.
T Consensus 100 ~~~ad~il~VvD~~~~~~--~~d~~l~~~l~~-~~~pvilV~NK~D~~~~~~--~~~e~~-~lg~~~~~~iSA~~g~gv~ 173 (456)
T 4dcu_A 100 MDEADVIIFMVNGREGVT--AADEEVAKILYR-TKKPVVLAVNKLDNTEMRA--NIYDFY-SLGFGEPYPISGTHGLGLG 173 (456)
T ss_dssp HHHCSEEEEEEESSSCSC--HHHHHHHHHHTT-CCSCEEEEEECC-----------CCSG-GGSSSSEEECCTTTCTTHH
T ss_pred HhhCCEEEEEEeCCCCCC--hHHHHHHHHHHH-cCCCEEEEEECccchhhhh--hHHHHH-HcCCCceEEeecccccchH
Confidence 899999999999876432 223333333222 4899999999999864321 111222 2232 56799999999999
Q ss_pred HHHHHHHHHHhc
Q 030504 162 KPFLYLARKLAG 173 (176)
Q Consensus 162 ~~~~~l~~~i~~ 173 (176)
++++++.+.+.+
T Consensus 174 ~L~~~i~~~l~~ 185 (456)
T 4dcu_A 174 DLLDAVAEHFKN 185 (456)
T ss_dssp HHHHHHHTTGGG
T ss_pred HHHHHHHhhccc
Confidence 999999887653
No 157
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.90 E-value=2.2e-24 Score=158.16 Aligned_cols=160 Identities=16% Similarity=0.102 Sum_probs=114.9
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcC--------CCCCc-------cccceeEEEeEEEEEecCcEEEEEEEeCCCccc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTG--------EFEKK-------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 74 (176)
..+.+||+++|++++|||||+++++.. .+... .....|.+.......++.....+.+|||||++.
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 457899999999999999999998762 11110 011344455544455555667889999999999
Q ss_pred cccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCC-EEEEEeCCCCCcc-c----cCHHHHHHHHHcC--
Q 030504 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNR-Q----VKAKQVTFHRKKN-- 146 (176)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~liv~nK~Dl~~~-~----~~~~~~~~~~~~~-- 146 (176)
|.......+..+|++++|+|++++...+. ..++..+... +.| +++++||+|+... . ...+..+++...+
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~qt-~~~l~~~~~~--~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQV--GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFP 164 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCHHH-HHHHHHHHHT--TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcHHH-HHHHHHHHHc--CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhccc
Confidence 98888888899999999999998754333 3444444443 778 8899999999742 1 1123445566555
Q ss_pred ---CeEEEeccCCCCC------------------hHHHHHHHHHHHh
Q 030504 147 ---LQYYEISAKSNYN------------------FEKPFLYLARKLA 172 (176)
Q Consensus 147 ---~~~~~~S~~~~~~------------------v~~~~~~l~~~i~ 172 (176)
++++++||++|.| +.++++.+...+.
T Consensus 165 ~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 165 GDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp TTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred ccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 6899999999987 7788888877654
No 158
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.90 E-value=4.1e-24 Score=149.32 Aligned_cols=157 Identities=17% Similarity=0.230 Sum_probs=91.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCC-CCCcc-------ccceeEEEeEEEEEecCcEEEEEEEeCCCcccc-------c
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGE-FEKKY-------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-------G 76 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------~ 76 (176)
..++|+++|.+|+|||||+|+++... +...+ .++.+.+........++..+.+.+|||||.... .
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 57999999999999999999966443 33333 455555555555544555679999999997322 1
Q ss_pred ccc-------cccc-------------ccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccC-
Q 030504 77 GLR-------DGYY-------------IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK- 135 (176)
Q Consensus 77 ~~~-------~~~~-------------~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~- 135 (176)
... ..++ .++|+++++++.+...-...-..++..+.. +.|+++|+||+|+......
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~---~~pvi~V~nK~D~~~~~e~~ 163 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE---KVNIIPLIAKADTLTPEECQ 163 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT---TSCEEEEESSGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc---cCCEEEEEeccCCCCHHHHH
Confidence 111 1122 236799999987653211222234444433 8999999999998653322
Q ss_pred ---HHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHHH
Q 030504 136 ---AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (176)
Q Consensus 136 ---~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~i 171 (176)
....+.+...++.++++|+++++|+++++++|.+.+
T Consensus 164 ~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 164 QFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 223455667789999999999999999999998754
No 159
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.90 E-value=1.4e-24 Score=160.33 Aligned_cols=153 Identities=19% Similarity=0.215 Sum_probs=102.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcC--CCCCcc---------------------------ccceeEEEeEEEEEecCcE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKKY---------------------------EPTIGVEVHPLDFFTNCGK 61 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~ 61 (176)
.+.+||+++|++++|||||+++++.. .+.... ....|.+.......++...
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 46799999999999999999998753 332110 0012334443333445566
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHh------hhcCCCCEEEEEeCCCCCccc--
Q 030504 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC------RVCENIPIVLCGNKVDVKNRQ-- 133 (176)
Q Consensus 62 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~------~~~~~~p~liv~nK~Dl~~~~-- 133 (176)
..+.+|||||++++...+..++..+|++++|+|+++ .+|+....|..+.. ....-.|+++++||+|+.+..
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~ 162 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD 162 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcccc
Confidence 789999999999998888889999999999999998 55554332211111 111234699999999997621
Q ss_pred ------cCHHHHHHHHHcC-----CeEEEeccCCCCChHHHH
Q 030504 134 ------VKAKQVTFHRKKN-----LQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 134 ------~~~~~~~~~~~~~-----~~~~~~S~~~~~~v~~~~ 164 (176)
...+..+++...+ ++++++||++|+|+.+++
T Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 163 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence 1233446666655 689999999999997554
No 160
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.90 E-value=4.6e-24 Score=141.73 Aligned_cols=117 Identities=18% Similarity=0.189 Sum_probs=89.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCc---cccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccccccccc--
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK---YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH-- 85 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~-- 85 (176)
...++|+++|++|||||||++++..+.+... +.++.+. +...+.+.+|||||++.+...+..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 116 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA---------DYDGSGVTLVDFPGHVKLRYKLSDYLKTRA 116 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee---------eecCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence 5678999999999999999999988775431 2222211 1144578899999999988888887776
Q ss_pred --ccEEEEEEeCC-ChhhhhhHHHHHHHHhhh-----cCCCCEEEEEeCCCCCccccCH
Q 030504 86 --GQCAIIMFDVT-ARLTYKNVPTWHRDLCRV-----CENIPIVLCGNKVDVKNRQVKA 136 (176)
Q Consensus 86 --~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~-----~~~~p~liv~nK~Dl~~~~~~~ 136 (176)
+|++++|+|++ +..++..+..|+..+... .++.|+++|+||+|+.......
T Consensus 117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~ 175 (193)
T 2ged_A 117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPS 175 (193)
T ss_dssp GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHH
T ss_pred ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHH
Confidence 89999999999 888998888887766543 2589999999999998654433
No 161
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.90 E-value=2.6e-23 Score=157.93 Aligned_cols=156 Identities=21% Similarity=0.197 Sum_probs=105.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCc----cccceeEEEeEEEE------------EecCcEEEEEEEeCCCccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK----YEPTIGVEVHPLDF------------FTNCGKIRFYCWDTAGQEK 74 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~----~~~~~~~~~~~~~~------------~~~~~~~~~~~~D~~g~~~ 74 (176)
++..+|+++|++++|||||+++++....... ..++.|........ ..+.....+.+|||||++.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 3567999999999999999999876543221 12233322221110 0001122589999999999
Q ss_pred cccccccccccccEEEEEEeCCC---hhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccC--------------H-
Q 030504 75 FGGLRDGYYIHGQCAIIMFDVTA---RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK--------------A- 136 (176)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~--------------~- 136 (176)
|...+...+..+|++++|+|+++ +.+++.+. .+.. .+.|+++++||+|+...... .
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~--~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~ 156 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM--YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ 156 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHHH--TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHHH--cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence 99999999999999999999998 44443332 2223 38999999999999642110 0
Q ss_pred ----------HHHHHHHHc---------------CCeEEEeccCCCCChHHHHHHHHHHHh
Q 030504 137 ----------KQVTFHRKK---------------NLQYYEISAKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 137 ----------~~~~~~~~~---------------~~~~~~~S~~~~~~v~~~~~~l~~~i~ 172 (176)
+........ .++++++||++|.|++++++++...+.
T Consensus 157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 011111222 237999999999999999999987654
No 162
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.90 E-value=8.3e-25 Score=162.66 Aligned_cols=155 Identities=14% Similarity=0.173 Sum_probs=108.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
++..+|+++|++++|||||++++..+.+.....+ |++.......+......+.+|||||++.|...+...+..+|+++
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~--GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAG--GITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBC--CCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCC--CeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 3568999999999999999999887654432222 22222222222223446889999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccC---HHHH---HHHHHc--CCeEEEeccCCCCChHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK---AKQV---TFHRKK--NLQYYEISAKSNYNFEK 162 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~---~~~~---~~~~~~--~~~~~~~S~~~~~~v~~ 162 (176)
+|+|++++...+....+ ..+.. .+.|+++++||+|+...... .+.. .+.... .++++++||++|.|+++
T Consensus 80 LVVda~~g~~~qT~e~l-~~~~~--~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~e 156 (501)
T 1zo1_I 80 LVVAADDGVMPQTIEAI-QHAKA--AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDE 156 (501)
T ss_dssp EEEETTTBSCTTTHHHH-HHHHH--TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTT
T ss_pred EEeecccCccHHHHHHH-HHHHh--cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcch
Confidence 99999986544444333 22222 38899999999999753211 1110 111222 26899999999999999
Q ss_pred HHHHHHHH
Q 030504 163 PFLYLARK 170 (176)
Q Consensus 163 ~~~~l~~~ 170 (176)
+|+++...
T Consensus 157 Lle~I~~~ 164 (501)
T 1zo1_I 157 LLDAILLQ 164 (501)
T ss_dssp HHHHTTTT
T ss_pred hhhhhhhh
Confidence 99998754
No 163
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.90 E-value=2.3e-23 Score=154.18 Aligned_cols=157 Identities=20% Similarity=0.216 Sum_probs=100.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeE--EEEEecCcEEEEEEEeCCCcccccccc---------
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHP--LDFFTNCGKIRFYCWDTAGQEKFGGLR--------- 79 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~g~~~~~~~~--------- 79 (176)
...+||+++|++|||||||+|++++.... ...+..|++... ..+..++. .+.+|||+|..+.....
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~-~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~ 254 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERA-LVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSN 254 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTE-EECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCC
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCccc-ccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHH
Confidence 35689999999999999999997765431 122333333332 33444443 57899999975432211
Q ss_pred ---ccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc-CH-HHH-HHHH----HcCCeE
Q 030504 80 ---DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-KA-KQV-TFHR----KKNLQY 149 (176)
Q Consensus 80 ---~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~-~~-~~~-~~~~----~~~~~~ 149 (176)
..+++.+|++++|+|++++.+.+.. .+...+.. .++|+++++||+|+..... .. +.. .+.+ ..++++
T Consensus 255 ~~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (439)
T 1mky_A 255 YRVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER--RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL 331 (439)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH--cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcE
Confidence 2346678999999999886655432 22233333 3899999999999875332 11 111 2222 235789
Q ss_pred EEeccCCCCChHHHHHHHHHHHhc
Q 030504 150 YEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 150 ~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
+++||++|.|++++|+.+.+.+.+
T Consensus 332 ~~~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 332 IFTSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999887643
No 164
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.90 E-value=1e-23 Score=155.80 Aligned_cols=151 Identities=19% Similarity=0.197 Sum_probs=103.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCC--CCc----------cccc-------------------eeEEEeEEEEEecC
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF--EKK----------YEPT-------------------IGVEVHPLDFFTNC 59 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~--~~~----------~~~~-------------------~~~~~~~~~~~~~~ 59 (176)
.+.+||+++|++++|||||+++++.+.. ... ...+ .|++.......+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 4569999999999999999999875431 100 0011 12333323333444
Q ss_pred cEEEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc------
Q 030504 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ------ 133 (176)
Q Consensus 60 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~------ 133 (176)
....+.+|||||++.|...+..++..+|++++|+|++++...+.. .++..+... ...|+++|+||+|+.+..
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~-~~l~~~~~~-~~~~iIvviNK~Dl~~~~~~~~~~ 179 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR-RHSYIASLL-GIKHIVVAINKMDLNGFDERVFES 179 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH-HHHHHHHHT-TCCEEEEEEECTTTTTSCHHHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHHc-CCCeEEEEEEcCcCCcccHHHHHH
Confidence 567899999999999988888889999999999999986533332 333333332 223699999999997521
Q ss_pred cCHHHHHHHHHcC-----CeEEEeccCCCCChHHH
Q 030504 134 VKAKQVTFHRKKN-----LQYYEISAKSNYNFEKP 163 (176)
Q Consensus 134 ~~~~~~~~~~~~~-----~~~~~~S~~~~~~v~~~ 163 (176)
...+...+++..+ ++++++||++|.|++++
T Consensus 180 i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 180 IKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 1223445666666 78999999999999874
No 165
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.90 E-value=3.5e-23 Score=149.67 Aligned_cols=143 Identities=8% Similarity=-0.013 Sum_probs=104.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 94 (176)
+|+++|++++|||||+++++ ..|.+.......+......+.+|||||+++|.......+..+|++++|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~----------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG----------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS----------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH----------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 99999999999999999977 22333333334445455679999999999988777777899999999999
Q ss_pred CCChhhhhhHHHHHHHHhhhcCCCCE-EEEEe-CCCCCccccC----HHHHHHHHHc---CCeEEE--eccCC---CCCh
Q 030504 95 VTARLTYKNVPTWHRDLCRVCENIPI-VLCGN-KVDVKNRQVK----AKQVTFHRKK---NLQYYE--ISAKS---NYNF 160 (176)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~p~-liv~n-K~Dl~~~~~~----~~~~~~~~~~---~~~~~~--~S~~~---~~~v 160 (176)
+... ......++..+... +.|. ++++| |+|+ +.... .+..++++.. .+++++ +||++ +.|+
T Consensus 93 -~~g~-~~qt~e~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi 167 (370)
T 2elf_A 93 -PQGL-DAHTGECIIALDLL--GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGV 167 (370)
T ss_dssp -TTCC-CHHHHHHHHHHHHT--TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTH
T ss_pred -CCCC-cHHHHHHHHHHHHc--CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCH
Confidence 5432 33344444444443 6787 88999 9999 53221 2233444443 368999 99999 9999
Q ss_pred HHHHHHHHHHHh
Q 030504 161 EKPFLYLARKLA 172 (176)
Q Consensus 161 ~~~~~~l~~~i~ 172 (176)
++++++|.+.+.
T Consensus 168 ~~L~~~l~~~~~ 179 (370)
T 2elf_A 168 DELKARINEVAE 179 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhcc
Confidence 999999988754
No 166
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.90 E-value=1.1e-22 Score=146.62 Aligned_cols=158 Identities=16% Similarity=0.069 Sum_probs=102.8
Q ss_pred eeE-EEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccc---------cccccccc
Q 030504 13 SFK-LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK---------FGGLRDGY 82 (176)
Q Consensus 13 ~~~-i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~ 82 (176)
.++ |+++|.+|+|||||+|++.+........+....+.....+.+++ ..+.+|||+|.-. +.... ..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~ 254 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SE 254 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HH
Confidence 455 99999999999999999876654221111111122333444444 5678999999622 22222 24
Q ss_pred cccccEEEEEEeCCChh--hhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccccCH---HHHHHHHHc---CCeEEEec
Q 030504 83 YIHGQCAIIMFDVTARL--TYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKA---KQVTFHRKK---NLQYYEIS 153 (176)
Q Consensus 83 ~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~~~~---~~~~~~~~~---~~~~~~~S 153 (176)
+..+|++++|+|++++. ..+....|...+.... .+.|+++|+||+|+....... ....+++.. +.+++++|
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~S 334 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPIS 334 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECB
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 67899999999999876 4555555555544432 578999999999987543211 111233444 34789999
Q ss_pred cCCCCChHHHHHHHHHHHhc
Q 030504 154 AKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 154 ~~~~~~v~~~~~~l~~~i~~ 173 (176)
|+++.|+++++++|.+.+.+
T Consensus 335 A~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 335 ALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp TTTTBSHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhcc
Confidence 99999999999999987654
No 167
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.89 E-value=4.8e-24 Score=153.94 Aligned_cols=158 Identities=18% Similarity=0.295 Sum_probs=86.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcC-CCCCcc--------ccceeEEEeEEEEEecCcEEEEEEEeCCCc-------ccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTG-EFEKKY--------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ-------EKF 75 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~-------~~~ 75 (176)
..++|+++|++|+|||||+++++.. .+...+ .++.+...........+..+.+.+|||||+ +.+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 4689999999999999999996543 333222 134444443443444455678999999998 666
Q ss_pred ccccc-------cccccccE-----------EEEEEeCCC-hhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCccccC
Q 030504 76 GGLRD-------GYYIHGQC-----------AIIMFDVTA-RLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVK 135 (176)
Q Consensus 76 ~~~~~-------~~~~~~~~-----------~i~v~d~~~-~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~ 135 (176)
..++. .+++.+++ .+++|++++ ..++..+. .++..+ ..+.|+++|+||+|+......
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl~~~~ev 192 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLKER 192 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECCSSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECCCCCCHHHH
Confidence 66654 44443332 234455443 44555554 333333 258999999999999764322
Q ss_pred ----HHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHHHhc
Q 030504 136 ----AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 136 ----~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
.+..+++...+++++++||+++.+ ++.|.++.+.+.+
T Consensus 193 ~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~ 233 (361)
T 2qag_A 193 ERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKA 233 (361)
T ss_dssp HHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHh
Confidence 234566677789999999999999 8888888887754
No 168
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.89 E-value=1e-23 Score=156.87 Aligned_cols=154 Identities=18% Similarity=0.206 Sum_probs=90.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhc--CCCCCcc---------------------------ccceeEEEeEEEEEecCcE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLT--GEFEKKY---------------------------EPTIGVEVHPLDFFTNCGK 61 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~--~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~ 61 (176)
.+.+||+++|+.++|||||+++++. +.+.... ....|.+.......+....
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 4578999999999999999999864 3321100 0012233322222233345
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEeCCChh---hhhhHHHHHHHHhh-hcCCCC-EEEEEeCCCCCccc---
Q 030504 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYKNVPTWHRDLCR-VCENIP-IVLCGNKVDVKNRQ--- 133 (176)
Q Consensus 62 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~-~~~~~p-~liv~nK~Dl~~~~--- 133 (176)
..+.+|||||++.|...+...+..+|++|+|+|++++. +|+...++.+.+.. ...+.| +++++||+|+....
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~ 200 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSE 200 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCH
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccH
Confidence 68999999999999988888899999999999999863 34322222222111 113777 99999999996422
Q ss_pred -----cCHHHHHHHHHc-------CCeEEEeccCCCCChHHHH
Q 030504 134 -----VKAKQVTFHRKK-------NLQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 134 -----~~~~~~~~~~~~-------~~~~~~~S~~~~~~v~~~~ 164 (176)
...+...+++.. +++++++||++|.|+.+++
T Consensus 201 ~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 201 ERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 112344555554 4679999999999998755
No 169
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.89 E-value=6e-23 Score=163.13 Aligned_cols=161 Identities=15% Similarity=0.068 Sum_probs=113.1
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCC-------CCC-------ccccceeEEEeEEEEEecCcEEEEEEEeCCCccc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGE-------FEK-------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 74 (176)
...+.+||+++|++++|||||++++.... +.. ....+.|++.......++.....+.+|||||++.
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed 371 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD 371 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence 34578999999999999999999987531 100 1123455555554455555667899999999999
Q ss_pred cccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCC-EEEEEeCCCCCccc-----cCHHHHHHHHHcC--
Q 030504 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQ-----VKAKQVTFHRKKN-- 146 (176)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~liv~nK~Dl~~~~-----~~~~~~~~~~~~~-- 146 (176)
|.......+..+|++|+|+|++++...+.. .++..+... +.| +++++||+|+.+.. ...+...++...+
T Consensus 372 F~~~mi~gas~AD~aILVVDAtdGv~~QTr-EhL~ll~~l--gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~ 448 (1289)
T 3avx_A 372 YVKNMITGAAQMDGAILVVAATDGPMPQTR-EHILLGRQV--GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP 448 (1289)
T ss_dssp HHHHHHHTSCCCSEEEEEEETTTCSCTTHH-HHHHHHHHH--TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHhhCCEEEEEEcCCccCcHHHH-HHHHHHHHc--CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence 988888889999999999999987544433 333444443 788 78999999997522 1223445666655
Q ss_pred ---CeEEEeccCCC--------CChHHHHHHHHHHHh
Q 030504 147 ---LQYYEISAKSN--------YNFEKPFLYLARKLA 172 (176)
Q Consensus 147 ---~~~~~~S~~~~--------~~v~~~~~~l~~~i~ 172 (176)
++++++||++| .|+.+++++|.+.+.
T Consensus 449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 68999999999 468999999887654
No 170
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.88 E-value=4.5e-23 Score=157.42 Aligned_cols=153 Identities=18% Similarity=0.167 Sum_probs=103.0
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCcc-----------------------------ccceeEEEeEEEEEecCc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY-----------------------------EPTIGVEVHPLDFFTNCG 60 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 60 (176)
..+.+||+++|++++|||||+++++.....-.. ....|++.......+...
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 356899999999999999999998754221000 001244444444444456
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEeCCChh---hhh---hHHHHHHHHhhhcCCCCEEEEEeCCCCCccc-
Q 030504 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYK---NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ- 133 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~- 133 (176)
...+.+|||||++.+...+...+..+|++|+|+|++++. ++. .....+... ......|+++|+||+|+.+..
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~-~~lgi~~iIVVvNKiDl~~~~~ 322 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLA-SSLGIHNLIIAMNKMDNVDWSQ 322 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHH-HTTTCCEEEEEEECTTTTTTCH
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHH-HHcCCCeEEEEEecccccchhH
Confidence 678999999999999988899999999999999998753 111 111111222 222234599999999997621
Q ss_pred -----cCHHHHHHHHHcC-----CeEEEeccCCCCChHHH
Q 030504 134 -----VKAKQVTFHRKKN-----LQYYEISAKSNYNFEKP 163 (176)
Q Consensus 134 -----~~~~~~~~~~~~~-----~~~~~~S~~~~~~v~~~ 163 (176)
...+...++...+ ++++++||++|.|+.++
T Consensus 323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 1122334444443 58999999999999875
No 171
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.88 E-value=2.1e-23 Score=154.91 Aligned_cols=151 Identities=16% Similarity=0.198 Sum_probs=103.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcC--CCCCc------------------c---------ccceeEEEeEEEEEecCcE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKK------------------Y---------EPTIGVEVHPLDFFTNCGK 61 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~--~~~~~------------------~---------~~~~~~~~~~~~~~~~~~~ 61 (176)
.+.++|+++|++++|||||+++++.. .+... + ....|++.......++...
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 46799999999999999999998753 22110 0 0012333333333444556
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEeCCChh---hhh---hHHHHHHHHhhhcCCCC-EEEEEeCCCCCc--c
Q 030504 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYK---NVPTWHRDLCRVCENIP-IVLCGNKVDVKN--R 132 (176)
Q Consensus 62 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~p-~liv~nK~Dl~~--~ 132 (176)
..+.+|||||++.|...+...+..+|++++|+|++++. +|+ .....+..+.. .+.| +++++||+|+.+ .
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~--~~v~~iivviNK~Dl~~~~~ 162 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT--LGVRQLIVAVNKMDSVKWDE 162 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH--TTCCEEEEEEECGGGGTTCH
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH--cCCCeEEEEEEccccccCCH
Confidence 78999999999999888888899999999999999763 332 22222222222 2665 899999999973 1
Q ss_pred c----cCHHHHHHHHHcC-----CeEEEeccCCCCChHHH
Q 030504 133 Q----VKAKQVTFHRKKN-----LQYYEISAKSNYNFEKP 163 (176)
Q Consensus 133 ~----~~~~~~~~~~~~~-----~~~~~~S~~~~~~v~~~ 163 (176)
. ...+...+++..+ ++++++||++|.|+.++
T Consensus 163 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 163 SRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred HHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 1 1223345555554 68999999999998743
No 172
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.88 E-value=6.6e-22 Score=132.94 Aligned_cols=158 Identities=13% Similarity=0.002 Sum_probs=97.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccc----------ccccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF----------GGLRD 80 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----------~~~~~ 80 (176)
.+..+|+++|++|||||||++++.+..+...+.++.|.+........++ .+.+|||||.... .....
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 3567999999999999999999776654445566666655443333333 4679999997431 11122
Q ss_pred ccc---ccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc----CHHHHHHHHHcC--CeEEE
Q 030504 81 GYY---IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKN--LQYYE 151 (176)
Q Consensus 81 ~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~----~~~~~~~~~~~~--~~~~~ 151 (176)
.++ ..++++++++|++++.+.... .....+.. .+.|+++++||+|+..... ......++...+ +.+++
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~--~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQ-QMIEWAVD--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVET 177 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHH--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEE
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHH-HHHHHHHH--cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEE
Confidence 233 467999999999886543221 11122222 3889999999999875321 223334444443 57899
Q ss_pred eccCCCCChHHHHHHHHHHHhcC
Q 030504 152 ISAKSNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 152 ~S~~~~~~v~~~~~~l~~~i~~~ 174 (176)
+|++++.|+++++++|.+.+.+.
T Consensus 178 ~Sal~~~~~~~l~~~l~~~~~~~ 200 (210)
T 1pui_A 178 FSSLKKQGVDKLRQKLDTWFSEM 200 (210)
T ss_dssp CBTTTTBSHHHHHHHHHHHHC--
T ss_pred EeecCCCCHHHHHHHHHHHHhhc
Confidence 99999999999999999876553
No 173
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.87 E-value=1.6e-22 Score=142.91 Aligned_cols=159 Identities=13% Similarity=0.184 Sum_probs=101.4
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCc------cccce-----------------e---EEEe------------
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK------YEPTI-----------------G---VEVH------------ 51 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~------~~~~~-----------------~---~~~~------------ 51 (176)
.....+|+++|.+|||||||+|++++..+.+. ..|+. | .+..
T Consensus 23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~ 102 (299)
T 2aka_B 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 34668999999999999999999887765321 11210 0 0000
Q ss_pred -----------EEEEEec-CcEEEEEEEeCCCccc-------------cccccccccccccEEE-EEEeCCChhhhhhHH
Q 030504 52 -----------PLDFFTN-CGKIRFYCWDTAGQEK-------------FGGLRDGYYIHGQCAI-IMFDVTARLTYKNVP 105 (176)
Q Consensus 52 -----------~~~~~~~-~~~~~~~~~D~~g~~~-------------~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~ 105 (176)
...+... .....+.+|||||... +......+++.++.++ +|+|+++..+.....
T Consensus 103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~ 182 (299)
T 2aka_B 103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 182 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence 0000000 1135789999999642 3345556777887666 799998765555444
Q ss_pred HHHHHHhhhcCCCCEEEEEeCCCCCcccc-CHHHHH-HHHH--cC-CeEEEeccCCCCChHHHHHHHHHH
Q 030504 106 TWHRDLCRVCENIPIVLCGNKVDVKNRQV-KAKQVT-FHRK--KN-LQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 106 ~~~~~~~~~~~~~p~liv~nK~Dl~~~~~-~~~~~~-~~~~--~~-~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
.+...+.. .+.|+++|+||+|+..... ..+... .... .+ .+++++||+++.|++++++++.+.
T Consensus 183 ~~~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 183 KIAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHHHHCT--TCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHHHhCC--CCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 45555543 3789999999999975432 122111 0001 12 368899999999999999998763
No 174
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.87 E-value=1.1e-21 Score=147.54 Aligned_cols=118 Identities=17% Similarity=0.184 Sum_probs=81.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcC--CCCC------------------ccccceeEEEeEEEEEecCcEEEEEEEeCC
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTG--EFEK------------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTA 70 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~--~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 70 (176)
...++|+++|++++|||||+++++.. .... ....+.|.+.......+....+.+.+||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 35789999999999999999998852 1100 001123334333334444466789999999
Q ss_pred CccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc
Q 030504 71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (176)
Q Consensus 71 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~ 131 (176)
|++.+......++..+|++++|+|++++...+. ..++..+.. .+.|+++++||+|+..
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~~--~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTRL--RDTPILTFMNKLDRDI 148 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHTT--TTCCEEEEEECTTSCC
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHHH--cCCCEEEEEcCcCCcc
Confidence 999998888888999999999999998643222 223333333 3899999999999865
No 175
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.87 E-value=6.5e-23 Score=156.12 Aligned_cols=159 Identities=20% Similarity=0.192 Sum_probs=88.4
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCC--CCCc---------------------------cccceeEEEeEEEEEecCc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGE--FEKK---------------------------YEPTIGVEVHPLDFFTNCG 60 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~ 60 (176)
..+.+||+++|++++|||||+++++... .... .....|++.......+...
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 3467899999999999999999986311 0000 0012344555444445555
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEeCCChh---hh---hhHHHHHHHHhhhcCCCC-EEEEEeCCCCCccc
Q 030504 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TY---KNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQ 133 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~p-~liv~nK~Dl~~~~ 133 (176)
...+.+|||||++.|...+...+..+|++|+|+|++++. ++ ......+..+... +.| +++|+||+|+.+..
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l--gip~iIvviNKiDl~~~~ 331 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL--GISEIVVSVNKLDLMSWS 331 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS--SCCCEEEEEECGGGGTTC
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc--CCCeEEEEEecccccccc
Confidence 678999999999999998889999999999999998753 22 1122222222222 565 99999999997521
Q ss_pred --c----CHHHHHHH-HHcCC-----eEEEeccCCCCChH--------------HHHHHHHHH
Q 030504 134 --V----KAKQVTFH-RKKNL-----QYYEISAKSNYNFE--------------KPFLYLARK 170 (176)
Q Consensus 134 --~----~~~~~~~~-~~~~~-----~~~~~S~~~~~~v~--------------~~~~~l~~~ 170 (176)
. ..+...++ +..++ +++++||++|.|+. .+++.|...
T Consensus 332 ~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~ 394 (592)
T 3mca_A 332 EDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQL 394 (592)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhh
Confidence 1 12233444 44444 79999999999998 677776553
No 176
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.86 E-value=2e-21 Score=149.86 Aligned_cols=117 Identities=20% Similarity=0.178 Sum_probs=83.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCC-------------Ccccc---ceeEEEeEEEEEecCcEEEEEEEeCCCccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFE-------------KKYEP---TIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~-------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 74 (176)
.+..+|+++|+.|+|||||+++++..... ..+.+ ..++++...........+.+.+|||||++.
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 35679999999999999999998732211 00000 112333333344444567899999999999
Q ss_pred cccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCC
Q 030504 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (176)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~ 130 (176)
+......+++.+|++++|+|+++....+.. .++..+... +.|+++++||+|+.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~~--~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAERL--GLPRMVVVTKLDKG 139 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHT--TCCEEEEEECGGGC
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHHc--cCCEEEEecCCchh
Confidence 988888899999999999998876543333 334444443 89999999999987
No 177
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.86 E-value=3.1e-21 Score=149.31 Aligned_cols=119 Identities=20% Similarity=0.187 Sum_probs=84.1
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhc--CCCCCc--------cc------cceeEEEeEEEEEecCcEEEEEEEeCCCcc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK--------YE------PTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~--~~~~~~--------~~------~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 73 (176)
.....||+|+|++++|||||+++++. +..... .. ...+.+............+.+.+|||||+.
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 88 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHV 88 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSST
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCcc
Confidence 34678999999999999999999873 221100 00 011222222223333346789999999999
Q ss_pred ccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc
Q 030504 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (176)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~ 131 (176)
.+...+..+++.+|++++|+|+++..+.+....|.. +... +.|+++|+||+|+..
T Consensus 89 df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~~--~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 89 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEKY--KVPRIAFANKMDKTG 143 (691)
T ss_dssp TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHT--TCCEEEEEECTTSTT
T ss_pred chHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHHc--CCCEEEEEECCCccc
Confidence 998888999999999999999998877766655543 3333 899999999999875
No 178
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.86 E-value=4.1e-22 Score=140.72 Aligned_cols=134 Identities=14% Similarity=0.064 Sum_probs=108.8
Q ss_pred HHHHHHhcCCCC-CccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEEeCCChh-hhhhHH
Q 030504 28 TFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVP 105 (176)
Q Consensus 28 tl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~ 105 (176)
+|+.++..+.|. ..+.||+|..+. ..... .. .+.+||+ +++++.+++.+++++|++++|||++++. +++.+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~--~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDE--TG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCC--SS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcC--CC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 688888999998 888999994443 33222 22 6889999 8999999999999999999999999987 788888
Q ss_pred HHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcC--CeEEEeccCCCCChHHHHHHHHH
Q 030504 106 TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 106 ~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
.|+..+.. .+.|+++|+||+|+.+.....+..+++..++ +.+++|||++|.|++++|.++..
T Consensus 106 ~~l~~~~~--~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 106 KFLVLAEK--NELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHH--CCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 89887665 4899999999999976433334556666666 89999999999999999998754
No 179
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.84 E-value=2.3e-20 Score=136.29 Aligned_cols=158 Identities=15% Similarity=0.119 Sum_probs=104.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeEEEeEEEEEecCcEEEEEEEeCCCcccc----ccccccc---cccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF----GGLRDGY---YIHG 86 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----~~~~~~~---~~~~ 86 (176)
.|+|+|++|||||||++++...... ..+..+ ........+..+. ...+.+||+||.... ..+...+ +..+
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ft-Tl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFT-TLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTC-SSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccc-eecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 4899999999999999997654321 011100 0111111222222 246889999997432 2222222 3468
Q ss_pred cEEEEEEeCCChhhhhhHHHHHHHHhhh---cCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChHHH
Q 030504 87 QCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
+.++.++|++ ...+..+..+...+... ..+.|.++++||+|+............+...++.++.+||++++|++++
T Consensus 237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL 315 (416)
T 1udx_A 237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPAL 315 (416)
T ss_dssp SEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHH
T ss_pred HhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEEEECCCccCHHHH
Confidence 9999999998 54555565555554433 2368999999999998653223334555566889999999999999999
Q ss_pred HHHHHHHHhcCC
Q 030504 164 FLYLARKLAGST 175 (176)
Q Consensus 164 ~~~l~~~i~~~~ 175 (176)
+++|.+.+.+.+
T Consensus 316 ~~~i~~~l~~~~ 327 (416)
T 1udx_A 316 KEALHALVRSTP 327 (416)
T ss_dssp HHHHHHHHHTSC
T ss_pred HHHHHHHHHhcc
Confidence 999999887653
No 180
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.84 E-value=2.1e-21 Score=136.98 Aligned_cols=161 Identities=19% Similarity=0.286 Sum_probs=84.7
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcC-CCCCcc--------ccceeEEEeEEEEEecCcEEEEEEEeCCCc-------c
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTG-EFEKKY--------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ-------E 73 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~-------~ 73 (176)
..-.++|+++|++|+|||||++++... .+...+ .++.+.....+.....+....+++||++|. +
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence 345689999999999999999996653 333322 112221111222222334568999999998 4
Q ss_pred ccccccc-------ccccc-------------ccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc
Q 030504 74 KFGGLRD-------GYYIH-------------GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133 (176)
Q Consensus 74 ~~~~~~~-------~~~~~-------------~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~ 133 (176)
.+..... .++.. +++++++.+++. .+++.... ..+.....+.|+++|+||.|+....
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~--~~l~~l~~~~~iilV~~K~Dl~~~~ 171 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV--AFMKAIHNKVNIVPVIAKADTLTLK 171 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH--HHHHHHTTTSCEEEEECCGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH--HHHHHHHhcCCEEEEEEeCCCCCHH
Confidence 4444433 33222 344555555432 23333321 2233333467999999999997532
Q ss_pred c----CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHHHhcC
Q 030504 134 V----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 134 ~----~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~i~~~ 174 (176)
. ..+..++++..+++++++||+++ |++++|.++++.+.+.
T Consensus 172 e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~ 215 (301)
T 2qnr_A 172 ERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKAS 215 (301)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcC
Confidence 2 23456778888999999999999 9999999999987643
No 181
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.84 E-value=2.7e-20 Score=129.15 Aligned_cols=119 Identities=13% Similarity=0.144 Sum_probs=82.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccc------
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI------ 84 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~------ 84 (176)
.+.+||+++|.+|+|||||+++++....... .+..+.+...........+..+.+|||||++.+......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRV-SPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCC-CSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCccc-CCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 4689999999999999999999887664221 222222333333333334568999999999887665554443
Q ss_pred ---cccEEEEEEeCCChhhhhhH-HHHHHHHhhhcC---CCCEEEEEeCCCCCc
Q 030504 85 ---HGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCE---NIPIVLCGNKVDVKN 131 (176)
Q Consensus 85 ---~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~---~~p~liv~nK~Dl~~ 131 (176)
++|++++|++++... +... ..|+..+...+. ..|+++|+||+|+..
T Consensus 113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 789999999988655 4433 356666655432 359999999999853
No 182
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.83 E-value=1.3e-19 Score=140.51 Aligned_cols=119 Identities=18% Similarity=0.145 Sum_probs=83.7
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhc--CCCCCc-----------cc---cceeEEEeEEEEEec-------CcEEEEEE
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK-----------YE---PTIGVEVHPLDFFTN-------CGKIRFYC 66 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~--~~~~~~-----------~~---~~~~~~~~~~~~~~~-------~~~~~~~~ 66 (176)
.....||+|+|+.++|||||+++++. +..... +. ...|.+......... +..+.+.+
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 34568999999999999999999874 222110 00 012223322222222 23488999
Q ss_pred EeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc
Q 030504 67 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (176)
Q Consensus 67 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~ 131 (176)
|||||+..|...+..+++.+|++|+|+|+++....+....|. .... .+.|+++++||+|+..
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~--~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR-QANK--YKVPRIAFVNKMDRMG 148 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHH-HHHH--cCCCEEEEEeCCCccc
Confidence 999999999888888999999999999999876655554443 3333 3899999999999865
No 183
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.83 E-value=1.2e-20 Score=136.95 Aligned_cols=113 Identities=15% Similarity=0.120 Sum_probs=92.5
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEeCCC----------hhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCC
Q 030504 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA----------RLTYKNVPTWHRDLCRV--CENIPIVLCGNKVD 128 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~D 128 (176)
.+.+.+|||+|++.++..|..++++++++|+|||+++ ..+++.+..|+..+... .++.|+++|+||+|
T Consensus 216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~D 295 (402)
T 1azs_C 216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQD 295 (402)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChh
Confidence 4889999999999999999999999999999999998 78899999998888654 46899999999999
Q ss_pred CCcccc--------------------------------CHHHHHHH-----HH--------cCCeEEEeccCCCCChHHH
Q 030504 129 VKNRQV--------------------------------KAKQVTFH-----RK--------KNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 129 l~~~~~--------------------------------~~~~~~~~-----~~--------~~~~~~~~S~~~~~~v~~~ 163 (176)
+..+.. ..++..++ .. ..+.+++|||+++.||+++
T Consensus 296 L~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~v 375 (402)
T 1azs_C 296 LLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV 375 (402)
T ss_dssp HHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHH
T ss_pred hhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHH
Confidence 854211 11222332 21 3567889999999999999
Q ss_pred HHHHHHHHhc
Q 030504 164 FLYLARKLAG 173 (176)
Q Consensus 164 ~~~l~~~i~~ 173 (176)
|.++...+.+
T Consensus 376 F~~v~~~I~~ 385 (402)
T 1azs_C 376 FNDCRDIIQR 385 (402)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999887764
No 184
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.83 E-value=2.6e-20 Score=144.29 Aligned_cols=108 Identities=13% Similarity=0.085 Sum_probs=76.6
Q ss_pred EEEEEeCCCccc---cccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc---cCH
Q 030504 63 RFYCWDTAGQEK---FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ---VKA 136 (176)
Q Consensus 63 ~~~~~D~~g~~~---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~---~~~ 136 (176)
.+.+|||||... .......++..+|++++|+|++++.+......|...+... +.|+++|+||+|+.... ...
T Consensus 175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~--~~~iiiVlNK~Dl~~~~~~~~ee 252 (695)
T 2j69_A 175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGR--GLTVFFLVNAWDQVRESLIDPDD 252 (695)
T ss_dssp TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTS--CCCEEEEEECGGGGGGGCSSTTC
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhh--CCCEEEEEECcccccccccChhh
Confidence 589999999654 3345567788999999999999887666655554444332 77899999999986542 100
Q ss_pred ---------HHHH----HHHH---------cCCeEEEeccC--------------CCCChHHHHHHHHHHHh
Q 030504 137 ---------KQVT----FHRK---------KNLQYYEISAK--------------SNYNFEKPFLYLARKLA 172 (176)
Q Consensus 137 ---------~~~~----~~~~---------~~~~~~~~S~~--------------~~~~v~~~~~~l~~~i~ 172 (176)
.... .... ....++++||+ ++.|+++++.++.+.+.
T Consensus 253 ~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 253 VEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLT 324 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHH
Confidence 0111 1111 12469999999 99999999999988764
No 185
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.83 E-value=8.2e-20 Score=141.47 Aligned_cols=119 Identities=18% Similarity=0.180 Sum_probs=84.3
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhc--CCCCCc--------ccc------ceeEEEeEEEEEecCcEEEEEEEeCCCcc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK--------YEP------TIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~--~~~~~~--------~~~------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 73 (176)
.....+|+|+|.+|+|||||+++++. +..... ... ..+++............+.+.+|||||+.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 86 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV 86 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence 34678999999999999999999874 332110 000 11223322223333345789999999999
Q ss_pred ccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc
Q 030504 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (176)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~ 131 (176)
.+...+..+++.+|++++|+|+++..+.+....|. .+... +.|+++|+||+|+..
T Consensus 87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~~--~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATTY--GVPRIVFVNKMDKLG 141 (693)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHHT--TCCEEEEEECTTSTT
T ss_pred chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHHc--CCCEEEEEECCCccc
Confidence 99888888999999999999999877666655554 34433 899999999999875
No 186
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.83 E-value=4.4e-20 Score=128.68 Aligned_cols=119 Identities=13% Similarity=0.136 Sum_probs=82.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccccc---------
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDG--------- 81 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~--------- 81 (176)
...++|+++|.+|+|||||+|+++...+.. ..++.+.+...........+..+.+|||||++.+......
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVS-ISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSC-CCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccc-ccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 457999999999999999999988766432 1223333444444444445678999999999776543221
Q ss_pred ccccccEEEEEEeCCChhhhhhH-HHHHHHHhhhcCC---CCEEEEEeCCCCCc
Q 030504 82 YYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCEN---IPIVLCGNKVDVKN 131 (176)
Q Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~---~p~liv~nK~Dl~~ 131 (176)
....+|++++|+|++.. ++... ..|+..+...+.. .|+++|+||+|+..
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence 13478999999998753 34433 3566666554332 69999999999864
No 187
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.82 E-value=1.2e-19 Score=128.98 Aligned_cols=109 Identities=8% Similarity=0.083 Sum_probs=70.3
Q ss_pred EEEEEEeCCCccc-------------cccccccccccccEEEEEEeCCChh-hhhhHHHHHHHHhhhcCCCCEEEEEeCC
Q 030504 62 IRFYCWDTAGQEK-------------FGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKV 127 (176)
Q Consensus 62 ~~~~~~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~liv~nK~ 127 (176)
..+.+|||||... +......++..+|++++|+|+++.. .......+...+.. .+.|+++|+||+
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~--~~~~~i~v~NK~ 208 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP--EGKRTIGVITKL 208 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS--SCSSEEEEEECT
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC--CCCcEEEEEcCc
Confidence 4689999999753 3344556788999999999975432 21222233334433 378999999999
Q ss_pred CCCccccCHHHHHHHHH----cCCeEEEeccC---C---CCChHHHHHHHHHHHhcC
Q 030504 128 DVKNRQVKAKQVTFHRK----KNLQYYEISAK---S---NYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 128 Dl~~~~~~~~~~~~~~~----~~~~~~~~S~~---~---~~~v~~~~~~l~~~i~~~ 174 (176)
|+...... .....+. .+..++++|+. + +.|+.++++.+.+.+.+.
T Consensus 209 Dl~~~~~~--~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~ 263 (315)
T 1jwy_B 209 DLMDKGTD--AMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNH 263 (315)
T ss_dssp TSSCSSCC--CHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTC
T ss_pred ccCCcchH--HHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCC
Confidence 99754331 1222222 22566666554 4 789999999988877553
No 188
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.81 E-value=1.2e-20 Score=137.47 Aligned_cols=85 Identities=26% Similarity=0.288 Sum_probs=48.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCC-cc-----ccceeEEEeEEE---------------EEecC-cEEEEEEEeCCC
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEK-KY-----EPTIGVEVHPLD---------------FFTNC-GKIRFYCWDTAG 71 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~-~~-----~~~~~~~~~~~~---------------~~~~~-~~~~~~~~D~~g 71 (176)
++|+++|.+|||||||+|++.+..... .+ .+..|....... ...++ ..+.+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 589999999999999999988765321 11 122222111000 00121 247899999999
Q ss_pred cccc----cccc---ccccccccEEEEEEeCCCh
Q 030504 72 QEKF----GGLR---DGYYIHGQCAIIMFDVTAR 98 (176)
Q Consensus 72 ~~~~----~~~~---~~~~~~~~~~i~v~d~~~~ 98 (176)
.... +.+. ...++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 7542 2222 2457899999999999875
No 189
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.81 E-value=1.8e-19 Score=131.73 Aligned_cols=160 Identities=15% Similarity=0.174 Sum_probs=81.7
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCcc--------ccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc---
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY--------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--- 77 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--- 77 (176)
...-.++|+|+|++|+|||||++.+.+....... .++.+.....+.....+....+++||++|......
T Consensus 27 l~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~ 106 (418)
T 2qag_C 27 KRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN 106 (418)
T ss_dssp C-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC----------
T ss_pred ecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchh
Confidence 3345688999999999999999997765542111 12222222111222223345789999999765311
Q ss_pred ----------------------ccccccccccEEEEEEeCCCh-hhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCccc
Q 030504 78 ----------------------LRDGYYIHGQCAIIMFDVTAR-LTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ 133 (176)
Q Consensus 78 ----------------------~~~~~~~~~~~~i~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~ 133 (176)
+.++++..+++.+++|+.... .++.... .|+..+. .+.|+++|+||+|+....
T Consensus 107 ~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~ 183 (418)
T 2qag_C 107 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPE 183 (418)
T ss_dssp -CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHH
Confidence 234455566655555555432 3454444 4555553 378999999999987532
Q ss_pred cC----HHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHHH
Q 030504 134 VK----AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (176)
Q Consensus 134 ~~----~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~i 171 (176)
.. ......+...+++++++|++++.+++++|..+...+
T Consensus 184 ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 184 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred HHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 21 345567778899999999999999999888877653
No 190
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.79 E-value=1.3e-18 Score=131.53 Aligned_cols=118 Identities=17% Similarity=0.159 Sum_probs=87.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc--CCC---------------C---CccccceeEEEeEEEEEecCcEEEEEEEeCCC
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT--GEF---------------E---KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~--~~~---------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 71 (176)
+..||+|+|+.++|||||+.+++. |.. . .......|++.......+.++.+.++++||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 467999999999999999999863 110 0 01112235555555556666778899999999
Q ss_pred ccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcc
Q 030504 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132 (176)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~ 132 (176)
|..|.......++-+|++|+|+|+..+-..+....| +.+.+. +.|.++++||.|....
T Consensus 110 HvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~~--~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 110 HQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRMR--ATPVMTFVNKMDREAL 167 (548)
T ss_dssp GGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHHT--TCCEEEEEECTTSCCC
T ss_pred cHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHHh--CCceEEEEecccchhc
Confidence 999999999999999999999999988766666666 344444 9999999999998653
No 191
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.78 E-value=6e-20 Score=132.81 Aligned_cols=152 Identities=12% Similarity=0.166 Sum_probs=96.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccee----------------------------------------------
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG---------------------------------------------- 47 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~---------------------------------------------- 47 (176)
.+|+|+|.+|||||||++++.+..+.+....+..
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE 114 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence 3999999999999999999887665322211110
Q ss_pred ------EEEeEEEEEe-cCcEEEEEEEeCCCcccc-------------ccccccccccccEEEEEEeCCChhhh-hhHHH
Q 030504 48 ------VEVHPLDFFT-NCGKIRFYCWDTAGQEKF-------------GGLRDGYYIHGQCAIIMFDVTARLTY-KNVPT 106 (176)
Q Consensus 48 ------~~~~~~~~~~-~~~~~~~~~~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~-~~~~~ 106 (176)
+........+ ......+.+|||||...+ ......++.++|++|+|+|..+.... .....
T Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~ 194 (360)
T 3t34_A 115 TGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 194 (360)
T ss_dssp SCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHH
T ss_pred cCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHH
Confidence 0000001111 112335899999998765 44566778899999999987654322 22223
Q ss_pred HHHHHhhhcCCCCEEEEEeCCCCCccccC-HH-HHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 107 WHRDLCRVCENIPIVLCGNKVDVKNRQVK-AK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 107 ~~~~~~~~~~~~p~liv~nK~Dl~~~~~~-~~-~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
++..+.. .+.|+++|+||+|+.+.... .+ ...+....+.+|+++|+.++.++++.+.++
T Consensus 195 l~~~~~~--~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~ 255 (360)
T 3t34_A 195 ISREVDP--SGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMI 255 (360)
T ss_dssp HHHHSCT--TCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHH
T ss_pred HHHHhcc--cCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHH
Confidence 3333322 37899999999998754322 22 223344567889999999998887765543
No 192
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.78 E-value=9.9e-20 Score=131.31 Aligned_cols=157 Identities=11% Similarity=0.150 Sum_probs=92.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCcc------ccce--------------------------------------
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY------EPTI-------------------------------------- 46 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~------~~~~-------------------------------------- 46 (176)
....+|+|+|.+|||||||+|++++..+.+.. .|+.
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 34579999999999999999998876653211 1110
Q ss_pred -----eEEEeEEEEEec-CcEEEEEEEeCCCccc-------------ccccccccccccc-EEEEEEeCCChhhhhhHHH
Q 030504 47 -----GVEVHPLDFFTN-CGKIRFYCWDTAGQEK-------------FGGLRDGYYIHGQ-CAIIMFDVTARLTYKNVPT 106 (176)
Q Consensus 47 -----~~~~~~~~~~~~-~~~~~~~~~D~~g~~~-------------~~~~~~~~~~~~~-~~i~v~d~~~~~s~~~~~~ 106 (176)
|+........+. .....+.+|||||... +..+...++...+ ++++|.+++....-.....
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 000000001111 1135689999999642 2334455665555 5555666654332222223
Q ss_pred HHHHHhhhcCCCCEEEEEeCCCCCcccc-CHHHHH---HHHHcC-CeEEEeccCCCCChHHHHHHHHH
Q 030504 107 WHRDLCRVCENIPIVLCGNKVDVKNRQV-KAKQVT---FHRKKN-LQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 107 ~~~~~~~~~~~~p~liv~nK~Dl~~~~~-~~~~~~---~~~~~~-~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
++..+.. .+.|+++|+||+|+.+... ..+... +....+ ..++.+||+++.|++++++++.+
T Consensus 189 i~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 189 VAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHCT--TCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHhCc--CCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 4444433 3789999999999975432 111111 011123 35788999999999999999876
No 193
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.77 E-value=1.7e-18 Score=117.15 Aligned_cols=152 Identities=16% Similarity=0.112 Sum_probs=92.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEE--------------eEEEEEe----------------cCcE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEV--------------HPLDFFT----------------NCGK 61 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~----------------~~~~ 61 (176)
...+|+++|.+|||||||+++++..............+. ....... ....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 356899999999999999999875421110001110000 0000000 1123
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc--cCHHHH
Q 030504 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--VKAKQV 139 (176)
Q Consensus 62 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~--~~~~~~ 139 (176)
+.+.+|||+|+-.... .+....+.+++|+|+.+... ....+... . +.|.++|+||+|+.+.. ...+..
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~--~~~~~~~~---~--~~~~iiv~NK~Dl~~~~~~~~~~~~ 178 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDD--VVEKHPEI---F--RVADLIVINKVALAEAVGADVEKMK 178 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTT--HHHHCHHH---H--HTCSEEEEECGGGHHHHTCCHHHHH
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcch--hhhhhhhh---h--hcCCEEEEecccCCcchhhHHHHHH
Confidence 5678999998511111 11125688999999876531 11111111 1 57899999999997532 223344
Q ss_pred HHHHHc--CCeEEEeccCCCCChHHHHHHHHHHHhc
Q 030504 140 TFHRKK--NLQYYEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 140 ~~~~~~--~~~~~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
..++.. +++++++||++|.|++++|+++.+.+.+
T Consensus 179 ~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 179 ADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred HHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 444443 4789999999999999999999988764
No 194
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.76 E-value=1.1e-18 Score=125.88 Aligned_cols=103 Identities=8% Similarity=-0.017 Sum_probs=70.4
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHH-H
Q 030504 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-V 139 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~-~ 139 (176)
++.+.++||||... .....+..+|++++|+|+......+.+.. .....|.++|+||+|+......... .
T Consensus 171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~-------~~~~~p~ivVlNK~Dl~~~~~~~~~~~ 240 (355)
T 3p32_A 171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK-------GVLELADIVVVNKADGEHHKEARLAAR 240 (355)
T ss_dssp TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT-------TSGGGCSEEEEECCCGGGHHHHHHHHH
T ss_pred CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH-------hHhhcCCEEEEECCCCcChhHHHHHHH
Confidence 46789999999432 22234578999999999876654433321 1124699999999999754322211 1
Q ss_pred HHHHH---c-------CCeEEEeccCCCCChHHHHHHHHHHHhc
Q 030504 140 TFHRK---K-------NLQYYEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 140 ~~~~~---~-------~~~~~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
.+... . +.+++.+||++|.|++++++++.+.+.+
T Consensus 241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 241 ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 12111 1 4689999999999999999999887643
No 195
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.75 E-value=6.2e-19 Score=119.72 Aligned_cols=152 Identities=14% Similarity=0.127 Sum_probs=88.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEe------------EEEEEec-CcE-----------------
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH------------PLDFFTN-CGK----------------- 61 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~----------------- 61 (176)
..++|+++|.+|||||||+++++.+.+...+.++.+.+.. ......+ +..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4689999999999999999999877654444444443332 1111111 111
Q ss_pred --EEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc--cCHH
Q 030504 62 --IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--VKAK 137 (176)
Q Consensus 62 --~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~--~~~~ 137 (176)
..+.+.|++|.-.... .+-...+..+.++|......... ..... . +.|.++|+||+|+.... ...+
T Consensus 117 ~~~d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~~~~--~~~~~---~--~~~~iiv~NK~Dl~~~~~~~~~~ 186 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDDTIE--KHPGI---M--KTADLIVINKIDLADAVGADIKK 186 (226)
T ss_dssp GGCSEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTTTTT--TCHHH---H--TTCSEEEEECGGGHHHHTCCHHH
T ss_pred CCCCEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchhhHh--hhhhH---h--hcCCEEEEeccccCchhHHHHHH
Confidence 1344445444210000 01112234456666432211110 00111 1 57889999999997542 2333
Q ss_pred HHHHHHHc--CCeEEEeccCCCCChHHHHHHHHHHHhc
Q 030504 138 QVTFHRKK--NLQYYEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 138 ~~~~~~~~--~~~~~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
...+++.. +++++++||++|.|++++|+++.+.+.+
T Consensus 187 ~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 187 MENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 44555543 6799999999999999999999988764
No 196
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.72 E-value=1.2e-17 Score=131.88 Aligned_cols=118 Identities=18% Similarity=0.142 Sum_probs=85.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCC--CCCc--------------cc--cceeEEEeEEEEE------------ecCc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGE--FEKK--------------YE--PTIGVEVHPLDFF------------TNCG 60 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~--~~~~--------------~~--~~~~~~~~~~~~~------------~~~~ 60 (176)
....||+|+|+.++|||||+++++... .... .. .|++.......+. .++.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 356799999999999999999987531 1100 00 0111111112222 1334
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc
Q 030504 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~ 131 (176)
.+.+.+|||||+.+|...+..+++.+|++|+|+|++++.+++....|.... . .+.|+++++||+|+..
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~--~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G--ERIKPVVVINKVDRAL 164 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H--TTCEEEEEEECHHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H--cCCCeEEEEECCCcch
Confidence 789999999999999999999999999999999999988777766554333 2 3889999999999863
No 197
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.72 E-value=1.9e-16 Score=113.54 Aligned_cols=83 Identities=20% Similarity=0.061 Sum_probs=54.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCcccc--ceeEEEeEEEEEecCc---------------EEEEEEEeCCCcccc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP--TIGVEVHPLDFFTNCG---------------KIRFYCWDTAGQEKF 75 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~ 75 (176)
.++|+++|.+|||||||+|++..........| |.+... ..+.+++. ...+.+|||||..++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~--g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNT--GVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCS--SEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceE--EEEecCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence 37899999999999999999887653221111 221111 12233322 157899999998765
Q ss_pred c----ccc---ccccccccEEEEEEeCCC
Q 030504 76 G----GLR---DGYYIHGQCAIIMFDVTA 97 (176)
Q Consensus 76 ~----~~~---~~~~~~~~~~i~v~d~~~ 97 (176)
. .+. ..+++++|++++|+|+++
T Consensus 80 a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 80 ASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 3 222 234789999999999986
No 198
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.70 E-value=4.5e-18 Score=130.80 Aligned_cols=116 Identities=18% Similarity=0.199 Sum_probs=87.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc--CCCCCc-----------c---ccceeEEEeEEEEEecCcEEEEEEEeCCCccccc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT--GEFEKK-----------Y---EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG 76 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~--~~~~~~-----------~---~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 76 (176)
..||+|+|+.++|||||+.+++. |..... + ....|++.......+..+.+.++++|||||..|.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 36899999999999999999863 221110 0 1112555555555667777889999999999999
Q ss_pred cccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc
Q 030504 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (176)
Q Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~ 131 (176)
......++-+|++++|+|+..+-..+....|. .+.+. +.|.++++||.|...
T Consensus 82 ~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~-~a~~~--~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 82 AEVYRSLSVLDGAILLISAKDGVQAQTRILFH-ALRKM--GIPTIFFINKIDQNG 133 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTTCSHHHHHHH-HHHHH--TCSCEECCEECCSSS
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHH-HHHHc--CCCeEEEEecccccc
Confidence 98889999999999999999876656554443 44444 889999999999765
No 199
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.69 E-value=1.7e-17 Score=119.24 Aligned_cols=101 Identities=9% Similarity=-0.010 Sum_probs=62.1
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc-CHHHH
Q 030504 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-KAKQV 139 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~-~~~~~ 139 (176)
++.+.++||+|.... .......+|++++|+|++.+...+.+.. .+ -..|.++|+||+|+.+... .....
T Consensus 166 ~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i----l~~~~ivVlNK~Dl~~~~~~~~~~~ 235 (349)
T 2www_A 166 GYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI----IEMADLVAVTKSDGDLIVPARRIQA 235 (349)
T ss_dssp TCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC-------------------CCSCSEEEECCCSGGGHHHHHHHHH
T ss_pred CCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH----HhcCCEEEEeeecCCCchhHHHHHH
Confidence 456889999995321 2334568999999999987643222211 11 2568899999999964321 11111
Q ss_pred HHHH----------HcCCeEEEeccCCCCChHHHHHHHHHHH
Q 030504 140 TFHR----------KKNLQYYEISAKSNYNFEKPFLYLARKL 171 (176)
Q Consensus 140 ~~~~----------~~~~~~~~~S~~~~~~v~~~~~~l~~~i 171 (176)
.+.. ....+++.+|++++.|+++++++|.+.+
T Consensus 236 ~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 236 EYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp HHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 1211 1145789999999999999999998765
No 200
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.69 E-value=3.9e-17 Score=123.57 Aligned_cols=118 Identities=19% Similarity=0.129 Sum_probs=78.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCC---CccccceeEEEeEEEEE-------------------------------
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFE---KKYEPTIGVEVHPLDFF------------------------------- 56 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~---~~~~~~~~~~~~~~~~~------------------------------- 56 (176)
....+|+|+|.+|+|||||+|++++..+. ....++. +.......
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T--~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~ 140 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTT--DCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL 140 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCC--CSEEEEECCSSSEEECCC------------------CCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCcc--ceEEEEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence 35689999999999999999998877652 1112211 11000000
Q ss_pred -------ecCc-EEEEEEEeCCCccc-----------cccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCC
Q 030504 57 -------TNCG-KIRFYCWDTAGQEK-----------FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN 117 (176)
Q Consensus 57 -------~~~~-~~~~~~~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 117 (176)
.... ...+.+|||||... +......++..+|++++|+|+++.........++..+... +
T Consensus 141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~--~ 218 (550)
T 2qpt_A 141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH--E 218 (550)
T ss_dssp TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC--G
T ss_pred ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc--C
Confidence 0000 02588999999864 2234455678899999999998754444555565555443 6
Q ss_pred CCEEEEEeCCCCCcc
Q 030504 118 IPIVLCGNKVDVKNR 132 (176)
Q Consensus 118 ~p~liv~nK~Dl~~~ 132 (176)
.|+++|+||+|+...
T Consensus 219 ~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 219 DKIRVVLNKADMVET 233 (550)
T ss_dssp GGEEEEEECGGGSCH
T ss_pred CCEEEEEECCCccCH
Confidence 899999999999754
No 201
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.68 E-value=1.3e-16 Score=110.60 Aligned_cols=113 Identities=13% Similarity=-0.001 Sum_probs=70.2
Q ss_pred EEEEEEeCCCccccccccc------cccccccEEEEEEeCCChhhhhhHHHHHHHH-h-hhcCCCCEEEEEeCCCCCccc
Q 030504 62 IRFYCWDTAGQEKFGGLRD------GYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-C-RVCENIPIVLCGNKVDVKNRQ 133 (176)
Q Consensus 62 ~~~~~~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~-~-~~~~~~p~liv~nK~Dl~~~~ 133 (176)
+.+.+|||||......... ..+.. +++++++|+................ . ....+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 5789999999875432211 13355 8888999876433222221111111 1 111378999999999987543
Q ss_pred cCHHHHH----------------------------HHHHcC--CeEEEeccCCCCChHHHHHHHHHHHhcCC
Q 030504 134 VKAKQVT----------------------------FHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAGST 175 (176)
Q Consensus 134 ~~~~~~~----------------------------~~~~~~--~~~~~~S~~~~~~v~~~~~~l~~~i~~~~ 175 (176)
...+..+ +++..+ ++++++||+++.|++++++++.+.+...+
T Consensus 188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~~ 259 (262)
T 1yrb_A 188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCTCG 259 (262)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcccc
Confidence 1111111 123333 48999999999999999999998876554
No 202
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.66 E-value=4.3e-17 Score=116.99 Aligned_cols=102 Identities=11% Similarity=-0.053 Sum_probs=65.5
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCH----
Q 030504 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---- 136 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~---- 136 (176)
++.+.++||||...... .....+|++++|+|++.....+.+... . .+.|.++|+||+|+.+.....
T Consensus 148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~~--~-----~~~p~ivv~NK~Dl~~~~~~~~~~~ 217 (341)
T 2p67_A 148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKG--L-----MEVADLIVINKDDGDNHTNVAIARH 217 (341)
T ss_dssp TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHH--H-----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHHh--h-----hcccCEEEEECCCCCChHHHHHHHH
Confidence 46789999999654332 235789999999999765433322110 0 145889999999997542211
Q ss_pred HHHHHHHHc-------CCeEEEeccCCCCChHHHHHHHHHHHh
Q 030504 137 KQVTFHRKK-------NLQYYEISAKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 137 ~~~~~~~~~-------~~~~~~~S~~~~~~v~~~~~~l~~~i~ 172 (176)
+........ ..+++++||++|.|+++++++|.+.+.
T Consensus 218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 111111121 357899999999999999999988654
No 203
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.66 E-value=3e-15 Score=116.58 Aligned_cols=118 Identities=21% Similarity=0.251 Sum_probs=81.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhc--------CCCCCc--------cccceeEEEeEEEEEe--c-----CcEEEEEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLT--------GEFEKK--------YEPTIGVEVHPLDFFT--N-----CGKIRFYCW 67 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~--------~~~~~~--------~~~~~~~~~~~~~~~~--~-----~~~~~~~~~ 67 (176)
.+..||+|+|+.++|||||+.+++. |+.... .....|++.....+.. . ...+.++++
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 3457899999999999999999863 111100 0112233443333322 1 236889999
Q ss_pred eCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc
Q 030504 68 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (176)
Q Consensus 68 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~ 131 (176)
|||||..|.......++-+|++|+|+|+..+-..+....|... .+. +.|.++++||.|...
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a-~~~--~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQA-NKY--GVPRIVYVNKMDRQG 151 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHH-HHH--TCCEEEEEECSSSTT
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHH-HHc--CCCeEEEEccccccC
Confidence 9999999999889999999999999999987665555555443 343 899999999999754
No 204
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.64 E-value=3.6e-15 Score=107.51 Aligned_cols=78 Identities=17% Similarity=0.033 Sum_probs=53.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC-C-----ccccceeEEEeEEEEEecC-------------------cEEEEEEEe
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFE-K-----KYEPTIGVEVHPLDFFTNC-------------------GKIRFYCWD 68 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~D 68 (176)
++|+++|.+|+|||||++++...... . ...++.|.. .+++ ....+.+||
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~------~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvD 75 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV------PLEDERLYALQRTFAKGERVPPVVPTHVEFVD 75 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEE------ECCCHHHHHHHHHHCBTTBCCCEECCEEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeE------ecChHHHHHHHHHhcccccccccCCceEEEEE
Confidence 68999999999999999998764321 1 223444422 1111 235789999
Q ss_pred CCCcccccc----c---cccccccccEEEEEEeCCC
Q 030504 69 TAGQEKFGG----L---RDGYYIHGQCAIIMFDVTA 97 (176)
Q Consensus 69 ~~g~~~~~~----~---~~~~~~~~~~~i~v~d~~~ 97 (176)
|||...... + ....++++|++++|+|+++
T Consensus 76 tpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 76 IAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 999876532 2 2234789999999999985
No 205
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.63 E-value=3.1e-16 Score=103.14 Aligned_cols=105 Identities=6% Similarity=-0.100 Sum_probs=71.3
Q ss_pred CCCccccccccccccccccEEEEEEeCCChhhhhhHHHHH---HHH-hhh--cCCCCEEEEEeCC-CCCccccCHHHHHH
Q 030504 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWH---RDL-CRV--CENIPIVLCGNKV-DVKNRQVKAKQVTF 141 (176)
Q Consensus 69 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~---~~~-~~~--~~~~p~liv~nK~-Dl~~~~~~~~~~~~ 141 (176)
.+|++..+.+|+.|+.++|++|||+|++|...++ ....+ ..+ .+. ..+.|++|++||. |++......+..+.
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~ 187 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 187 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHH
Confidence 3488999999999999999999999999886544 44333 222 222 2578999999995 78654433332211
Q ss_pred H----HHcCCeEEEeccCCCCChHHHHHHHHHHHhcC
Q 030504 142 H----RKKNLQYYEISAKSNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 142 ~----~~~~~~~~~~S~~~~~~v~~~~~~l~~~i~~~ 174 (176)
. ....|.+..|||++|+|+.|.++||++.+..+
T Consensus 188 L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 188 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp TTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred cCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 1 12568899999999999999999999887654
No 206
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.60 E-value=6.4e-15 Score=103.98 Aligned_cols=96 Identities=16% Similarity=0.083 Sum_probs=80.1
Q ss_pred ccccccccccccccccEEEEEEeCCChh-hhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc---CHHHHHHHHHcCC
Q 030504 72 QEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQVTFHRKKNL 147 (176)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~---~~~~~~~~~~~~~ 147 (176)
++++..+.+.++.++|++++|+|++++. ++..+..|+..+.. .+.|+++|+||+|+.+... ..+..++++..++
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~--~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~ 143 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY--FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGY 143 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTC
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh--CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCC
Confidence 6788888889999999999999999886 88888888887665 4899999999999976431 2344566777889
Q ss_pred eEEEeccCCCCChHHHHHHHHH
Q 030504 148 QYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 148 ~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
+++++||++|.|+++++..+..
T Consensus 144 ~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 144 DVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp EEEECCTTTCTTHHHHHHHTTT
T ss_pred eEEEEECCCCCCHHHHHhhccC
Confidence 9999999999999999987653
No 207
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.57 E-value=8.8e-15 Score=113.46 Aligned_cols=105 Identities=11% Similarity=0.047 Sum_probs=68.4
Q ss_pred EEEEEeCCCcccc-------------cccccccc-ccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCC
Q 030504 63 RFYCWDTAGQEKF-------------GGLRDGYY-IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 128 (176)
Q Consensus 63 ~~~~~D~~g~~~~-------------~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~D 128 (176)
.+.++||||.... ......++ ..+|++++|+|++..........++..+... +.|+++|+||+|
T Consensus 151 qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~--g~pvIlVlNKiD 228 (772)
T 3zvr_A 151 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQ--GQRTIGVITKLD 228 (772)
T ss_dssp SEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTT--CSSEEEEEECTT
T ss_pred ceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhc--CCCEEEEEeCcc
Confidence 5789999995431 11222233 4689999999998764444433444455443 789999999999
Q ss_pred CCccccCHHHHHHHHH----cC-CeEEEeccCCCCChHHHHHHHHH
Q 030504 129 VKNRQVKAKQVTFHRK----KN-LQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 129 l~~~~~~~~~~~~~~~----~~-~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
+.+...........+. .+ ..++.+||++|.|++++++.+.+
T Consensus 229 lv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 229 LMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp SSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred cCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 9754332111111111 12 35678999999999999998886
No 208
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.55 E-value=8.5e-15 Score=100.85 Aligned_cols=105 Identities=6% Similarity=-0.119 Sum_probs=76.0
Q ss_pred CCCccccccccccccccccEEEEEEeCCChhhhhhHHHHH----HHHhhh--cCCCCEEEEEeC-CCCCccccCHHHHHH
Q 030504 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWH----RDLCRV--CENIPIVLCGNK-VDVKNRQVKAKQVTF 141 (176)
Q Consensus 69 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~----~~~~~~--~~~~p~liv~nK-~Dl~~~~~~~~~~~~ 141 (176)
.+|++..+.+|+.|+.++|++|||+|++|.+.++ ....+ ..+.+. ..+.|++|++|| .|++......+..+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 4688999999999999999999999999987654 33222 233232 368999999996 688765443332211
Q ss_pred H----HHcCCeEEEeccCCCCChHHHHHHHHHHHhcC
Q 030504 142 H----RKKNLQYYEISAKSNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 142 ~----~~~~~~~~~~S~~~~~~v~~~~~~l~~~i~~~ 174 (176)
. ....+.+..|||.+|+|+.|.++||++.+..+
T Consensus 273 L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 273 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp TTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred cCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 1 12467899999999999999999999988654
No 209
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.53 E-value=8.5e-14 Score=100.41 Aligned_cols=118 Identities=13% Similarity=-0.021 Sum_probs=76.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccc-------cccccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL-------RDGYYI 84 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-------~~~~~~ 84 (176)
...+|+++|.|+||||||+|++.+.+... ....++|.......+...+..+.+.||||.-..... ....++
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v--~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~ 148 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEA--AEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVAR 148 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCG--GGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcc--cCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence 35689999999999999999977644322 223334444444333335567889999996432211 223467
Q ss_pred cccEEEEEEeCCChhh-hhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc
Q 030504 85 HGQCAIIMFDVTARLT-YKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (176)
Q Consensus 85 ~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~ 131 (176)
.+|++++|+|++++.. .+.+...+..........|.+++.||.|...
T Consensus 149 ~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~g 196 (376)
T 4a9a_A 149 TCNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKGG 196 (376)
T ss_dssp HCSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSSC
T ss_pred hcCccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhhh
Confidence 8999999999998743 2333333333333335778889999999643
No 210
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.45 E-value=4.9e-14 Score=100.87 Aligned_cols=102 Identities=9% Similarity=0.047 Sum_probs=61.5
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc-cccC-HHH
Q 030504 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVK-AKQ 138 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~-~~~~-~~~ 138 (176)
++.+.++||+|..... ......+|.+++|+|+......+.+... +. ..|.++++||+|+.. .... ...
T Consensus 147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~----~~~~ivvlNK~Dl~~~~~~s~~~~ 216 (337)
T 2qm8_A 147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF----ELADMIAVNKADDGDGERRASAAA 216 (337)
T ss_dssp TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH----HHCSEEEEECCSTTCCHHHHHHHH
T ss_pred CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh----ccccEEEEEchhccCchhHHHHHH
Confidence 5678999999965321 1234688999999998654322111111 11 235677789999753 2111 111
Q ss_pred HHHHHH----c------CCeEEEeccCCCCChHHHHHHHHHHHh
Q 030504 139 VTFHRK----K------NLQYYEISAKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 139 ~~~~~~----~------~~~~~~~S~~~~~~v~~~~~~l~~~i~ 172 (176)
..+... . ..+++.+|++++.|++++++.|.+...
T Consensus 217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 217 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 122111 1 357899999999999999999887643
No 211
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.42 E-value=1.5e-13 Score=99.60 Aligned_cols=88 Identities=16% Similarity=0.005 Sum_probs=49.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCc---------------EEEEEEEeCCCcccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG---------------KIRFYCWDTAGQEKF 75 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~ 75 (176)
....+|+++|.+|+|||||+|++.+........|..+.+.....+.+++. ...+.+|||||....
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 35689999999999999999998766542222222222222233333321 235899999998765
Q ss_pred cc-------ccccccccccEEEEEEeCCCh
Q 030504 76 GG-------LRDGYYIHGQCAIIMFDVTAR 98 (176)
Q Consensus 76 ~~-------~~~~~~~~~~~~i~v~d~~~~ 98 (176)
.+ .+..+++++|++++|+|+.+.
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC---
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 43 345667899999999999854
No 212
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.35 E-value=3.5e-11 Score=87.35 Aligned_cols=86 Identities=16% Similarity=0.083 Sum_probs=55.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeEEEeEEEEEecCc---------------EEEEEEEeCCCcccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCG---------------KIRFYCWDTAGQEKF 75 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~ 75 (176)
+..+++++|++|||||||+|.+.+... .....|....+.....+.+.+. ...+.+||+||....
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 467999999999999999999876543 2222222212222223333321 135889999995432
Q ss_pred -------ccccccccccccEEEEEEeCCC
Q 030504 76 -------GGLRDGYYIHGQCAIIMFDVTA 97 (176)
Q Consensus 76 -------~~~~~~~~~~~~~~i~v~d~~~ 97 (176)
.......++.+|++++|+|+.+
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2233445678999999999864
No 213
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.25 E-value=1.1e-11 Score=89.80 Aligned_cols=96 Identities=20% Similarity=0.209 Sum_probs=73.2
Q ss_pred CccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCH-HH----HHHHHHc
Q 030504 71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-KQ----VTFHRKK 145 (176)
Q Consensus 71 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~-~~----~~~~~~~ 145 (176)
..+.|......+++.++++++|+|++++. ..|...+.+...+.|+++|+||+|+.+..... .. ...++..
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~ 129 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQL 129 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHc
Confidence 35778888888888999999999999864 34444555555689999999999997644322 22 2345667
Q ss_pred CC---eEEEeccCCCCChHHHHHHHHHHH
Q 030504 146 NL---QYYEISAKSNYNFEKPFLYLARKL 171 (176)
Q Consensus 146 ~~---~~~~~S~~~~~~v~~~~~~l~~~i 171 (176)
++ .++.+||++|.|++++++++.+..
T Consensus 130 g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 130 GLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp TCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 77 799999999999999999987654
No 214
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.19 E-value=5e-11 Score=83.25 Aligned_cols=100 Identities=12% Similarity=0.050 Sum_probs=71.3
Q ss_pred EEeCCCcc-ccccccccccccccEEEEEEeCCChhhhhh--HHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHH
Q 030504 66 CWDTAGQE-KFGGLRDGYYIHGQCAIIMFDVTARLTYKN--VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFH 142 (176)
Q Consensus 66 ~~D~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~ 142 (176)
+-..|||. .........+.++|+++.|+|+.++.+... +..+ ..++|.++|+||+|+.+........+++
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~-------l~~kp~ilVlNK~DL~~~~~~~~~~~~~ 75 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDI-------LKNKPRIMLLNKADKADAAVTQQWKEHF 75 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHH-------CSSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHH-------HCCCCEEEEEECcccCCHHHHHHHHHHH
Confidence 34578876 334455666889999999999999876653 2222 2589999999999998743333344566
Q ss_pred HHcCCeEEEeccCCCCChHHHHHHHHHHHh
Q 030504 143 RKKNLQYYEISAKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 143 ~~~~~~~~~~S~~~~~~v~~~~~~l~~~i~ 172 (176)
+..+++++.+||+++.|++++++.+.+.+.
T Consensus 76 ~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 76 ENQGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp HTTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred HhcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 667889999999999999999998877654
No 215
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.16 E-value=4.3e-12 Score=91.87 Aligned_cols=139 Identities=12% Similarity=0.035 Sum_probs=81.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCC----CCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccc-------cc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGE----FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR-------DG 81 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~-------~~ 81 (176)
..+++++|.+|+|||||+|+++... ......+..|++........... +.++||||........ ..
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 238 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDLK 238 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHHH
Confidence 3579999999999999999977541 11112223344444444444433 6899999964322111 11
Q ss_pred cc---ccccEEEEEEeCCCh---hhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHH-HHHHHcCCeEEEecc
Q 030504 82 YY---IHGQCAIIMFDVTAR---LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISA 154 (176)
Q Consensus 82 ~~---~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~S~ 154 (176)
.+ ...+.+++++++... ..+..+ ..+.. .+.|+++++||.|........... .+.+..+..+...++
T Consensus 239 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~l----~~l~~--~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~~l~p~~~ 312 (369)
T 3ec1_A 239 IITPKREIHPRVYQLNEGQTLFFGGLARL----DYIKG--GRRSFVCYMANELTVHRTKLEKADSLYANQLGELLSPPSK 312 (369)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTEEE----EEEES--SSEEEEEEECTTSCEEEEEGGGHHHHHHHHBTTTBCSSCG
T ss_pred HHhcccccCceEEEEcCCceEEECCEEEE----EEccC--CCceEEEEecCCcccccccHHHHHHHHHHhcCCccCCCCc
Confidence 12 567999999998533 111111 11111 368999999999987655444444 444445665555555
Q ss_pred CCCCCh
Q 030504 155 KSNYNF 160 (176)
Q Consensus 155 ~~~~~v 160 (176)
....++
T Consensus 313 ~~~~~~ 318 (369)
T 3ec1_A 313 RYAAEF 318 (369)
T ss_dssp GGTTTC
T ss_pred hhhhhc
Confidence 544443
No 216
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.14 E-value=4.1e-11 Score=86.79 Aligned_cols=97 Identities=21% Similarity=0.208 Sum_probs=71.8
Q ss_pred CccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCH-HH----HHHHHHc
Q 030504 71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-KQ----VTFHRKK 145 (176)
Q Consensus 71 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~-~~----~~~~~~~ 145 (176)
.++.|.+....++..++++++|+|++++.+ .|...+.+...+.|+++|+||+|+.+..... .. ...++..
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~ 131 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEEL 131 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHc
Confidence 477888888888899999999999998763 2333333334588999999999997654322 22 2335666
Q ss_pred CC---eEEEeccCCCCChHHHHHHHHHHHh
Q 030504 146 NL---QYYEISAKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 146 ~~---~~~~~S~~~~~~v~~~~~~l~~~i~ 172 (176)
++ .++.+||++|.|++++++.+.+...
T Consensus 132 g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 132 GLCPVDVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp TCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred CCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 76 7899999999999999999876543
No 217
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.14 E-value=1.1e-11 Score=89.68 Aligned_cols=135 Identities=11% Similarity=0.027 Sum_probs=76.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCC-----CCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccc-------
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEF-----EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD------- 80 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~------- 80 (176)
..+++++|.+|+|||||+|+++.... .....+..|++........... +.++||||.........
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 236 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSL 236 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHH
Confidence 35899999999999999999775421 1123444566666655555433 78999999643321111
Q ss_pred -cc--cccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHH-HHcCCeEEEec
Q 030504 81 -GY--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFH-RKKNLQYYEIS 153 (176)
Q Consensus 81 -~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~-~~~~~~~~~~S 153 (176)
.+ ....+.+++++++........+.. +..+.. .+.|+++++||.|...........++. +..+..+...+
T Consensus 237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-~d~l~~--~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g~~l~p~~ 310 (368)
T 3h2y_A 237 KLITPTKEIKPMVFQLNEEQTLFFSGLAR-FDYVSG--GRRAFTCHFSNRLTIHRTKLEKADELYKNHAGDLLSPPT 310 (368)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEES--SSEEEEEEECTTSCEEEEEHHHHHHHHHHHBTTTBCSSC
T ss_pred HHhccccccCceEEEEcCCCEEEEcceEE-EEEecC--CCceEEEEecCccccccccHHHHHHHHHHHhCCccCCCc
Confidence 11 246788899998743211111100 111111 378999999999987655555544443 33454444333
No 218
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.10 E-value=8.7e-11 Score=87.88 Aligned_cols=152 Identities=13% Similarity=0.057 Sum_probs=85.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhc-----CCCC-----Cccccc-----------eeEEEeEEEEE-------------
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLT-----GEFE-----KKYEPT-----------IGVEVHPLDFF------------- 56 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~-----~~~~-----~~~~~~-----------~~~~~~~~~~~------------- 56 (176)
.+...|+++|.+||||||+++++.. |.-. ..+.+. .++........
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 3467899999999999999999762 2210 000000 00111110000
Q ss_pred ecCcEEEEEEEeCCCccccc-cccccc-----cccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCE-EEEEeCCCC
Q 030504 57 TNCGKIRFYCWDTAGQEKFG-GLRDGY-----YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDV 129 (176)
Q Consensus 57 ~~~~~~~~~~~D~~g~~~~~-~~~~~~-----~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~-liv~nK~Dl 129 (176)
.....+.+.++||||..... ..+... +..+|.+++|+|+..... .......+.+ ..|+ .+|+||.|.
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~---~~~~a~~~~~---~~~i~gvVlNK~D~ 252 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA---CEAQAKAFKD---KVDVASVIVTKLDG 252 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT---HHHHHHHHHH---HHCCCCEEEECTTS
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc---HHHHHHHHHh---hcCceEEEEeCCcc
Confidence 00134678999999965321 111111 226899999999987532 2222223322 2575 888999998
Q ss_pred CccccCHHHHHHHHHcCCeE------------------EEeccCCCCC-hHHHHHHHHHH
Q 030504 130 KNRQVKAKQVTFHRKKNLQY------------------YEISAKSNYN-FEKPFLYLARK 170 (176)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~------------------~~~S~~~~~~-v~~~~~~l~~~ 170 (176)
..+.. .........+.++ +.+|+..|.| +.++++++.+.
T Consensus 253 ~~~~g--~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 253 HAKGG--GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCCCT--HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccchH--HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 74321 2233333444433 3378899999 99999998765
No 219
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.05 E-value=8.6e-10 Score=76.55 Aligned_cols=135 Identities=17% Similarity=0.274 Sum_probs=68.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccc------cceeEE-EeEEEEEecCc--EEEEEEEeCCCcccccc---c--
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYE------PTIGVE-VHPLDFFTNCG--KIRFYCWDTAGQEKFGG---L-- 78 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~--~~~~~~~D~~g~~~~~~---~-- 78 (176)
.++++++|++|+|||||++.+.+-....... +..... .....+..... ...++++|++|...... .
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 5899999999999999999866422111100 000000 01111111112 23678999987421100 0
Q ss_pred -----------------------cccccccccEEEEEEeCCC-hhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc
Q 030504 79 -----------------------RDGYYIHGQCAIIMFDVTA-RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (176)
Q Consensus 79 -----------------------~~~~~~~~~~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~ 134 (176)
.+..+..+++.++++|... +-.-.. ...+..+.+ ..++++|.+|.|......
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~---~~~vI~Vi~K~D~lt~~e 157 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSK---VVNIIPVIAKADTMTLEE 157 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHT---TSEEEEEETTGGGSCHHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHh---cCcEEEEEeccccCCHHH
Confidence 0111234688888888652 211111 223333333 489999999999765332
Q ss_pred CH----HHHHHHHHcCCeEEE
Q 030504 135 KA----KQVTFHRKKNLQYYE 151 (176)
Q Consensus 135 ~~----~~~~~~~~~~~~~~~ 151 (176)
.. .........++.++.
T Consensus 158 ~~~~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 158 KSEFKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp HHHHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHHHcCccccC
Confidence 22 223344556666554
No 220
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.03 E-value=1.1e-09 Score=80.20 Aligned_cols=139 Identities=16% Similarity=0.191 Sum_probs=67.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCc--cccceeEEEeEEEEEecC--cEEEEEEEeCCCcccccc-----------
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKK--YEPTIGVEVHPLDFFTNC--GKIRFYCWDTAGQEKFGG----------- 77 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~g~~~~~~----------- 77 (176)
.++++|+|++|+|||||++.+.+-..... .....+.......+.... -...+.++|++|......
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 35799999999999999998665432111 000111122222222222 224688999987532100
Q ss_pred ---cccc-------------cccc--ccE-EEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHH
Q 030504 78 ---LRDG-------------YYIH--GQC-AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ 138 (176)
Q Consensus 78 ---~~~~-------------~~~~--~~~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~ 138 (176)
.+.. .... +|+ ++++.|...+-+... ...+..+. .+.|+++|.||+|..........
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-ieilk~L~---~~~~vI~Vi~KtD~Lt~~E~~~l 197 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-LVTMKKLD---SKVNIIPIIAKADAISKSELTKF 197 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-HHHHHHTC---SCSEEEEEESCGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-HHHHHHHh---hCCCEEEEEcchhccchHHHHHH
Confidence 0000 1112 233 444555543322111 12222222 48899999999997653322222
Q ss_pred ----HHHHHHcCCeEEEeccC
Q 030504 139 ----VTFHRKKNLQYYEISAK 155 (176)
Q Consensus 139 ----~~~~~~~~~~~~~~S~~ 155 (176)
.......|++++.+|.-
T Consensus 198 ~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 198 KIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HHHHHHHHBTTBCCCCCCC--
T ss_pred HHHHHHHHHHcCCcEEecCCC
Confidence 22234467777777753
No 221
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.01 E-value=5.5e-09 Score=76.42 Aligned_cols=156 Identities=19% Similarity=0.185 Sum_probs=82.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccce-e--EEEeEEEEEecCcEEEEEEEeCCCccccccccccc-----cc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI-G--VEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGY-----YI 84 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~-----~~ 84 (176)
...++++|++|+|||||+|.+.+-.......-+. + .+....... ......+.++|++|..........+ +.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q-~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc-ccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 3479999999999999999866422111111111 1 111111111 1111247889999854221111111 23
Q ss_pred cccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCC--cc-------ccCHHH----HHHH----HHcC-
Q 030504 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK--NR-------QVKAKQ----VTFH----RKKN- 146 (176)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~--~~-------~~~~~~----~~~~----~~~~- 146 (176)
..+..++ ++..... +.-......+... +.|+++|.||.|+. ++ ....+. ..+. .+.+
T Consensus 148 ~~~~~~~-lS~G~~~--kqrv~la~aL~~~--~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~ 222 (413)
T 1tq4_A 148 EYDFFII-ISATRFK--KNDIDIAKAISMM--KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGI 222 (413)
T ss_dssp GCSEEEE-EESSCCC--HHHHHHHHHHHHT--TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccCCeEE-eCCCCcc--HHHHHHHHHHHhc--CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3355554 6665211 1111233333333 78999999999964 11 111111 2222 1222
Q ss_pred --CeEEEecc--CCCCChHHHHHHHHHHHhcC
Q 030504 147 --LQYYEISA--KSNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 147 --~~~~~~S~--~~~~~v~~~~~~l~~~i~~~ 174 (176)
...+.+|+ ..+.|++++.+.+.+.+.+.
T Consensus 223 ~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 223 AEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp SSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred CCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 36788999 56667999999998876543
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.82 E-value=5.3e-09 Score=73.05 Aligned_cols=60 Identities=18% Similarity=0.164 Sum_probs=35.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 74 (176)
...++++++|.+|+|||||+|++.+... ....+..|+|.....+.... .+.++||||...
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~-~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 177 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNI-AKTGDRPGITTSQQWVKVGK---ELELLDTPGILW 177 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCC-C------------CCEEETT---TEEEEECCCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCce-eecCCCCCeeeeeEEEEeCC---CEEEEECcCcCC
Confidence 4568999999999999999999775442 23344445554443333322 478999999643
No 223
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.81 E-value=2.1e-09 Score=74.25 Aligned_cols=92 Identities=13% Similarity=0.025 Sum_probs=63.6
Q ss_pred CCCcccc-ccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCC
Q 030504 69 TAGQEKF-GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL 147 (176)
Q Consensus 69 ~~g~~~~-~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~ 147 (176)
.|||... .......+.++|+++.|+|+.++.+..... +. + . ++|.++|+||+|+.+........+++++.+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l---l-~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~ 76 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F---S-RKETIILLNKVDIADEKTTKKWVEFFKKQGK 76 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C---T-TSEEEEEEECGGGSCHHHHHHHHHHHHHTTC
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h---c-CCCcEEEEECccCCCHHHHHHHHHHHHHcCC
Confidence 4676532 234556678999999999999887654321 11 1 1 7899999999999875433344556666788
Q ss_pred eEEEeccCCCCChHHHHHHHH
Q 030504 148 QYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 148 ~~~~~S~~~~~~v~~~~~~l~ 168 (176)
++ .+||+++.|++++++++.
T Consensus 77 ~v-~iSa~~~~gi~~L~~~l~ 96 (262)
T 3cnl_A 77 RV-ITTHKGEPRKVLLKKLSF 96 (262)
T ss_dssp CE-EECCTTSCHHHHHHHHCC
T ss_pred eE-EEECCCCcCHHHHHHHHH
Confidence 88 999999999999887764
No 224
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.78 E-value=2.8e-09 Score=73.68 Aligned_cols=57 Identities=21% Similarity=0.156 Sum_probs=35.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 74 (176)
++++++|.+|+|||||+|++...... ...++.|++.....+..+ ..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~-~~~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRAS-SVGAQPGITKGIQWFSLE---NGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECT---TSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccc-ccCCCCCCccceEEEEeC---CCEEEEECCCccc
Confidence 69999999999999999997754432 334555655544333332 2578999999764
No 225
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.76 E-value=6.8e-08 Score=71.12 Aligned_cols=142 Identities=19% Similarity=0.125 Sum_probs=79.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc-----CCCC-----Ccccc-----------ceeEEEeEEEEE-------------e
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT-----GEFE-----KKYEP-----------TIGVEVHPLDFF-------------T 57 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~-----~~~~-----~~~~~-----------~~~~~~~~~~~~-------------~ 57 (176)
++..|+++|++|+||||++..+.. |.-. ..+.+ ..+......... .
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 468899999999999999988653 1100 00000 011111100000 0
Q ss_pred cCcEEEEEEEeCCCcccccc-ccc-----cccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc
Q 030504 58 NCGKIRFYCWDTAGQEKFGG-LRD-----GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (176)
Q Consensus 58 ~~~~~~~~~~D~~g~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~ 131 (176)
....+.+.++||+|...... ... .....+|.+++|+|+.... ........+.+. -.+..+|+||.|...
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq---~a~~~a~~f~~~--~~i~gVIlTKlD~~~ 253 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ---QAYNQALAFKEA--TPIGSIIVTKLDGSA 253 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHHS--CTTEEEEEECCSSCS
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch---hHHHHHHHHHhh--CCCeEEEEECCCCcc
Confidence 01226788999999543211 100 1123578999999988643 233333333332 345678899999865
Q ss_pred cccCHHHHHHHHHcCCeEEEeccCCCCChHH
Q 030504 132 RQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
+.- .........+.++..++. |+++++
T Consensus 254 ~gG--~~ls~~~~~g~PI~fig~--Ge~vdd 280 (443)
T 3dm5_A 254 KGG--GALSAVAATGAPIKFIGT--GEKIDD 280 (443)
T ss_dssp SHH--HHHHHHHTTCCCEEEEEC--SSSTTC
T ss_pred ccc--HHHHHHHHHCCCEEEEEc--CCChHH
Confidence 432 344555567888887775 777654
No 226
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.75 E-value=8.9e-09 Score=72.53 Aligned_cols=91 Identities=13% Similarity=0.073 Sum_probs=65.6
Q ss_pred ccccccccccccccEEEEEEeCCChhh-hhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc----CHHHHHHHHHcCCe
Q 030504 74 KFGGLRDGYYIHGQCAIIMFDVTARLT-YKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQ 148 (176)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~----~~~~~~~~~~~~~~ 148 (176)
+...+.+..+.++|.+++|+|+.+|.. ...+..++..... .++|.++|+||+||.+... ..+..+.++..+.+
T Consensus 75 R~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~--~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~ 152 (307)
T 1t9h_A 75 RTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA--NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYD 152 (307)
T ss_dssp CSCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT--TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred hhhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCe
Confidence 444566667889999999999997753 3333344333333 3889999999999987543 23445666677899
Q ss_pred EEEeccCCCCChHHHHHH
Q 030504 149 YYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 149 ~~~~S~~~~~~v~~~~~~ 166 (176)
++.+|+.++.|+++++..
T Consensus 153 v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 153 VYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp EEECCHHHHTTCTTTGGG
T ss_pred EEEEecCCCCCHHHHHhh
Confidence 999999999998876654
No 227
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.67 E-value=4.2e-09 Score=77.66 Aligned_cols=85 Identities=16% Similarity=0.052 Sum_probs=49.5
Q ss_pred cEEEEEEEeCCCcccccc-cc-----ccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCC-C-EEEEEeCCCCCc
Q 030504 60 GKIRFYCWDTAGQEKFGG-LR-----DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI-P-IVLCGNKVDVKN 131 (176)
Q Consensus 60 ~~~~~~~~D~~g~~~~~~-~~-----~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-p-~liv~nK~Dl~~ 131 (176)
..+.+.++||||...... .. ...+..+|.+++|+|+.... ........+. ... | ..+|+||.|...
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~---~~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGIQAKAFK---EAVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHHHHHHHH---TTSCSCEEEEEECSSSCS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHHHHHHHh---hcccCCeEEEEeCCCCcc
Confidence 345688999999653211 11 11123689999999987553 2222222222 245 6 889999999864
Q ss_pred cccCHHHHHHHHHcCCeEEEe
Q 030504 132 RQVKAKQVTFHRKKNLQYYEI 152 (176)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~ 152 (176)
.. ..........+.++..+
T Consensus 253 ~~--g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 253 KG--GGALSAVAETKAPIKFI 271 (432)
T ss_dssp TT--HHHHHHHHHSSCCEEEE
T ss_pred ch--HHHHHHHHHHCCCEEEe
Confidence 32 23345556666665554
No 228
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.52 E-value=5.7e-07 Score=64.61 Aligned_cols=83 Identities=10% Similarity=0.067 Sum_probs=57.6
Q ss_pred ccccccEEEEEEeCCChh-hhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc---CHHHHHHHHHcCCeEEEeccCCC
Q 030504 82 YYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQVTFHRKKNLQYYEISAKSN 157 (176)
Q Consensus 82 ~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~S~~~~ 157 (176)
...++|.+++|.+. .|. +...+..++...... ++|.++|+||+||.+... ..+....+...|++++.+|+.++
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~--~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~ 203 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL--QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQ 203 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH--TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTT
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc--CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 36788999988664 453 333344444333333 788899999999986543 22234556677899999999999
Q ss_pred CChHHHHHHH
Q 030504 158 YNFEKPFLYL 167 (176)
Q Consensus 158 ~~v~~~~~~l 167 (176)
.|++++...+
T Consensus 204 ~gl~~L~~~~ 213 (358)
T 2rcn_A 204 DGLKPLEEAL 213 (358)
T ss_dssp BTHHHHHHHH
T ss_pred cCHHHHHHhc
Confidence 9999877653
No 229
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.51 E-value=1.9e-07 Score=68.73 Aligned_cols=92 Identities=12% Similarity=0.048 Sum_probs=56.2
Q ss_pred EEEEEEEeCCCccc--ccc-cccc-----ccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcc
Q 030504 61 KIRFYCWDTAGQEK--FGG-LRDG-----YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132 (176)
Q Consensus 61 ~~~~~~~D~~g~~~--~~~-~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~ 132 (176)
.+.+.++||+|... ... .... .....+.+++|+|+..... .......+.+. -.+..+|+||.|...+
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~---a~~~a~~f~~~--~~~~gVIlTKlD~~a~ 253 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQK---AYDLASRFHQA--SPIGSVIITKMDGTAK 253 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---GHHHHHHHHHH--CSSEEEEEECGGGCSC
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchH---HHHHHHHHhcc--cCCcEEEEeccccccc
Confidence 45678999999543 111 1111 1124689999999986532 22333344433 3567889999998643
Q ss_pred ccCHHHHHHHHHcCCeEEEeccCCCCChH
Q 030504 133 QVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (176)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~S~~~~~~v~ 161 (176)
. ..........+.|+..++. |++++
T Consensus 254 ~--G~als~~~~~g~Pi~fig~--Ge~v~ 278 (433)
T 3kl4_A 254 G--GGALSAVVATGATIKFIGT--GEKID 278 (433)
T ss_dssp H--HHHHHHHHHHTCEEEEEEC--CSSSS
T ss_pred c--hHHHHHHHHHCCCEEEEEC--CCChH
Confidence 2 2345566667889888775 77663
No 230
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.46 E-value=3.5e-07 Score=64.30 Aligned_cols=92 Identities=12% Similarity=0.069 Sum_probs=57.3
Q ss_pred EEEEEEEeCCCccc--cc-cccc-----cccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCC-EEEEEeCCCCCc
Q 030504 61 KIRFYCWDTAGQEK--FG-GLRD-----GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKN 131 (176)
Q Consensus 61 ~~~~~~~D~~g~~~--~~-~~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~liv~nK~Dl~~ 131 (176)
.+.+.++||||... .. .... .....+|.+++|+|+... +........+.+ ..| ..+|.||.|...
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~---~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ---ASKIGTIIITKMDGTA 253 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH---TCTTEEEEEECGGGCT
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh---hCCCCEEEEeCCCCCc
Confidence 45688999999765 21 1111 123468999999998643 333333333332 456 778899999754
Q ss_pred cccCHHHHHHHHHcCCeEEEeccCCCCChHH
Q 030504 132 RQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
+. ..........+.++..++ .|+++++
T Consensus 254 ~~--g~~~~~~~~~~~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 254 KG--GGALSAVAATGATIKFIG--TGEKIDE 280 (297)
T ss_dssp TH--HHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred ch--HHHHHHHHHHCcCEEEEe--CCCChhh
Confidence 22 234566777888887776 5666654
No 231
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.41 E-value=3.7e-07 Score=69.67 Aligned_cols=65 Identities=15% Similarity=0.027 Sum_probs=39.2
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCcccc-ceeEEEeEEEE--Ee-cCcEEEEEEEeCCCccc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP-TIGVEVHPLDF--FT-NCGKIRFYCWDTAGQEK 74 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~-~~~~~~~~~~D~~g~~~ 74 (176)
..+..+|+|+|.+|+|||||+|++++....-.... +.+.+...+.. .. ......+.++||||...
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 45678999999999999999999776542111111 11222222211 11 12345688999999653
No 232
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.39 E-value=1e-08 Score=76.60 Aligned_cols=110 Identities=15% Similarity=-0.025 Sum_probs=61.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccc--ccccc--------c
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--FGGLR--------D 80 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--~~~~~--------~ 80 (176)
....+|+++|.+|+||||+.+++..... ....++.++..........+......+||..|.+. ....+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~-~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLN-FIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHh-ccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4567999999999999999999764321 11122222111111111111112346788888632 23332 4
Q ss_pred cccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEE
Q 030504 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG 124 (176)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~ 124 (176)
.++....+.++|+|.++. ..+....|...+.+. ..+++.+-
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~--~~~vv~l~ 156 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN--GYKTFFVE 156 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH--TCEEEEEE
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc--CCcEEEEE
Confidence 455567888999999987 344455565555444 44444443
No 233
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.31 E-value=2.5e-06 Score=60.77 Aligned_cols=91 Identities=13% Similarity=0.077 Sum_probs=53.5
Q ss_pred EEEEEeCCCcccccc-ccccc-----cccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCH
Q 030504 63 RFYCWDTAGQEKFGG-LRDGY-----YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA 136 (176)
Q Consensus 63 ~~~~~D~~g~~~~~~-~~~~~-----~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~ 136 (176)
.+.++|++|...... ....+ ....|-.+++.|+... +.+......+.+. -....+++||.|... ...
T Consensus 213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~---~~~~~~~~~~~~~--~~it~iilTKlD~~a--~~G 285 (328)
T 3e70_C 213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG---NAIVEQARQFNEA--VKIDGIILTKLDADA--RGG 285 (328)
T ss_dssp SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHHHHHHHHHH--SCCCEEEEECGGGCS--CCH
T ss_pred hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH---HHHHHHHHHHHHh--cCCCEEEEeCcCCcc--chh
Confidence 456789999643222 11111 1246888999997654 3333333444332 223467789998633 234
Q ss_pred HHHHHHHHcCCeEEEeccCCCCChHH
Q 030504 137 KQVTFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 137 ~~~~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
.........+.++..++ +|+++++
T Consensus 286 ~~l~~~~~~~~pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 286 AALSISYVIDAPILFVG--VGQGYDD 309 (328)
T ss_dssp HHHHHHHHHTCCEEEEE--CSSSTTC
T ss_pred HHHHHHHHHCCCEEEEe--CCCCccc
Confidence 45677777888888876 7777654
No 234
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.26 E-value=1.6e-06 Score=66.78 Aligned_cols=20 Identities=20% Similarity=0.526 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 030504 16 LVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~ 35 (176)
++|+|++|||||||++.+.+
T Consensus 48 iaIvG~nGsGKSTLL~~I~G 67 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSG 67 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHS
T ss_pred EEEECCCCChHHHHHHHHhC
Confidence 99999999999999998554
No 235
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.93 E-value=1.7e-05 Score=58.63 Aligned_cols=82 Identities=15% Similarity=0.145 Sum_probs=46.2
Q ss_pred EEEEEEEeCCCccccc-cccc-----cccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCC-EEEEEeCCCCCccc
Q 030504 61 KIRFYCWDTAGQEKFG-GLRD-----GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQ 133 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~-~~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~liv~nK~Dl~~~~ 133 (176)
.+.+.++||||..... .... .....++.+++|+|+... +........+.. ..+ .-+|+||.|...+.
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g---~~~~~~~~~f~~---~l~i~gvVlnK~D~~~~~ 256 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTG---QDAANTAKAFNE---ALPLTGVVLTKVDGDARG 256 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBC---TTHHHHHHHHHH---HSCCCCEEEECTTSSSCC
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchh---HHHHHHHHHHhc---cCCCeEEEEecCCCCccH
Confidence 4578899999964322 1111 113367899999998754 233333333332 344 34688999986433
Q ss_pred cCHHHHHHHHHcCCeEE
Q 030504 134 VKAKQVTFHRKKNLQYY 150 (176)
Q Consensus 134 ~~~~~~~~~~~~~~~~~ 150 (176)
..........+.++.
T Consensus 257 --g~~l~i~~~~~~Pi~ 271 (433)
T 2xxa_A 257 --GAALSIRHITGKPIK 271 (433)
T ss_dssp --THHHHHHHHHCCCEE
T ss_pred --HHHHHHHHHHCCCeE
Confidence 234455555565533
No 236
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.84 E-value=5.5e-06 Score=54.81 Aligned_cols=85 Identities=7% Similarity=-0.043 Sum_probs=54.2
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhh---cCCCCEEEEEeCCCCCccccCHH
Q 030504 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKNRQVKAK 137 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~p~liv~nK~Dl~~~~~~~~ 137 (176)
.+.+.++|+|+.. .......+..+|.++++...+... ..+...+..+.+. .++.++.+|.|+.|.... ...+
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~-~~~~ 149 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT-MLNV 149 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE-EEHH
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch-HHHH
Confidence 3678899999865 334455667789999999887544 5555555555433 346778999999996543 2233
Q ss_pred HHHHHHHcCCeEE
Q 030504 138 QVTFHRKKNLQYY 150 (176)
Q Consensus 138 ~~~~~~~~~~~~~ 150 (176)
..+..+..+.+++
T Consensus 150 ~~~~l~~~~~~vl 162 (206)
T 4dzz_A 150 LKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHTCCBC
T ss_pred HHHHHHHcCCcee
Confidence 4444455554443
No 237
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.81 E-value=3.3e-05 Score=57.17 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=22.2
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
+.+-.-|.|+|++++|||||+|++++
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhh
Confidence 34566799999999999999999874
No 238
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.75 E-value=1.7e-05 Score=51.53 Aligned_cols=20 Identities=50% Similarity=0.885 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
+++++|++|+|||||++.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~ 21 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIV 21 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999754
No 239
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.73 E-value=6.8e-06 Score=53.74 Aligned_cols=20 Identities=45% Similarity=0.813 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 030504 16 LVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~ 35 (176)
|+|+|++|||||||+++++.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999764
No 240
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.73 E-value=8.6e-05 Score=54.65 Aligned_cols=86 Identities=14% Similarity=0.075 Sum_probs=48.5
Q ss_pred EEEEEEEeCCCcccccc-ccc-----cccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc
Q 030504 61 KIRFYCWDTAGQEKFGG-LRD-----GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~ 134 (176)
.+.+.++||||...... ... .....++.+++|+|+... +........+... -...-+|.||.|...+.
T Consensus 180 ~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg---q~av~~a~~f~~~--l~i~GVIlTKlD~~~~~- 253 (425)
T 2ffh_A 180 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG---QEALSVARAFDEK--VGVTGLVLTKLDGDARG- 253 (425)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHHHHHHHHHH--TCCCEEEEESGGGCSSC-
T ss_pred CCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch---HHHHHHHHHHHhc--CCceEEEEeCcCCcccH-
Confidence 45688999999643211 111 112257889999998643 3333333333332 11245678999875432
Q ss_pred CHHHHHHHHHcCCeEEEec
Q 030504 135 KAKQVTFHRKKNLQYYEIS 153 (176)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~S 153 (176)
..........+.++..+.
T Consensus 254 -g~alsi~~~~g~PI~flg 271 (425)
T 2ffh_A 254 -GAALSARHVTGKPIYFAG 271 (425)
T ss_dssp -HHHHHHHHHHCCCEEEEE
T ss_pred -HHHHHHHHHHCCCEEEEe
Confidence 234556666788766654
No 241
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.70 E-value=2.1e-05 Score=51.14 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
--++|+|++|||||||++.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999998654
No 242
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.70 E-value=4.4e-05 Score=50.84 Aligned_cols=85 Identities=11% Similarity=0.002 Sum_probs=53.8
Q ss_pred EEEEEEEeCCCc-cccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc-cccCHHH
Q 030504 61 KIRFYCWDTAGQ-EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQ 138 (176)
Q Consensus 61 ~~~~~~~D~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~-~~~~~~~ 138 (176)
.+.+.++|+|+. .. ......+..+|.++++...+ ..+...+...++.+.+.. +.++.+|.|+.|... .. ..+.
T Consensus 67 ~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~-~~~~~vv~N~~~~~~~~~-~~~~ 141 (209)
T 3cwq_A 67 KYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG-NNRFRILLTIIPPYPSKD-GDEA 141 (209)
T ss_dssp GCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC-SSSEEEEECSBCCTTSCH-HHHH
T ss_pred cCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc-CCCEEEEEEecCCccchH-HHHH
Confidence 456889999986 32 23445567889999988865 445555555555555422 567889999998764 22 2334
Q ss_pred HHHHHHcCCeEE
Q 030504 139 VTFHRKKNLQYY 150 (176)
Q Consensus 139 ~~~~~~~~~~~~ 150 (176)
.+..++.+.+++
T Consensus 142 ~~~l~~~g~~v~ 153 (209)
T 3cwq_A 142 RQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHTTCCBC
T ss_pred HHHHHHcCCchh
Confidence 444445555443
No 243
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.66 E-value=2.4e-05 Score=50.45 Aligned_cols=20 Identities=45% Similarity=0.989 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999754
No 244
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.65 E-value=2.7e-05 Score=51.43 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
-.++|+|++|||||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999998654
No 245
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.56 E-value=4.3e-05 Score=49.89 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
-.++++|++|||||||++.+..
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999998654
No 246
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.55 E-value=4.2e-05 Score=49.92 Aligned_cols=20 Identities=45% Similarity=0.813 Sum_probs=17.8
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 030504 16 LVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~ 35 (176)
++|+|++|||||||++.+..
T Consensus 4 i~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999998653
No 247
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.54 E-value=2e-05 Score=55.53 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
-.++++|++|||||||+|.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHhcc
Confidence 4789999999999999998553
No 248
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.54 E-value=4.6e-05 Score=50.33 Aligned_cols=21 Identities=29% Similarity=0.551 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
-++++|++|||||||++.+..
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 589999999999999998654
No 249
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.50 E-value=5.3e-05 Score=50.29 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
-++|+|++|||||||++.+.+
T Consensus 22 i~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 488999999999999998543
No 250
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.50 E-value=5.5e-05 Score=50.79 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
--++|+|++|||||||++.+..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3588999999999999998554
No 251
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.50 E-value=7.5e-05 Score=49.60 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=20.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHh
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
.+...|+|+|++|||||||++.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~ 43 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLA 43 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 455789999999999999999754
No 252
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.50 E-value=8.1e-05 Score=49.04 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=20.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
+.--|+|+|++|||||||++++..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 444688999999999999999764
No 253
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.48 E-value=5.8e-05 Score=50.60 Aligned_cols=22 Identities=45% Similarity=0.812 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
-.++|+|++|||||||++.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999998554
No 254
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.48 E-value=9.6e-05 Score=48.73 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=21.8
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
+.....|+|+|.+||||||+.+.+..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999998653
No 255
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.45 E-value=9.5e-05 Score=49.13 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=20.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcC
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~ 36 (176)
+.--|+|+|++|||||||++.+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3346899999999999999986643
No 256
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.43 E-value=0.00011 Score=47.42 Aligned_cols=22 Identities=23% Similarity=0.538 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
..|++.|++||||||+.+++..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999765
No 257
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.43 E-value=8.1e-05 Score=49.26 Aligned_cols=22 Identities=41% Similarity=0.677 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.-|+|+|++|||||||++++..
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998654
No 258
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.42 E-value=9.6e-05 Score=50.38 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~ 34 (176)
.-.|+|+|++|||||||++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999865
No 259
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.40 E-value=9e-05 Score=47.55 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
..|+++|++||||||+.+.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La 25 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLA 25 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999854
No 260
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.40 E-value=8.8e-05 Score=50.33 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++|+|++|||||||++. +.|-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~-l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNI-IGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHH-HTTSS
T ss_pred EEEEECCCCCcHHHHHHH-HhcCC
Confidence 489999999999999997 54544
No 261
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.39 E-value=9.5e-05 Score=46.99 Aligned_cols=22 Identities=41% Similarity=0.634 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~ 36 (176)
.++++|+.|+|||||++.+...
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999986543
No 262
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.39 E-value=9.6e-05 Score=47.33 Aligned_cols=20 Identities=35% Similarity=0.519 Sum_probs=18.2
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 030504 14 FKLVIVGDGGTGKTTFVKRH 33 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~ 33 (176)
..|+++|++||||||+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999986
No 263
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.38 E-value=0.00016 Score=46.50 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~ 34 (176)
.-.|+++|++||||||+.+.+.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~ 29 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVA 29 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHH
Confidence 4579999999999999999854
No 264
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.38 E-value=0.00011 Score=47.05 Aligned_cols=20 Identities=15% Similarity=0.147 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
.|+|+|++||||||+.+.+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLS 22 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999865
No 265
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.37 E-value=0.00013 Score=46.99 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.-|+++|++||||||+.+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998654
No 266
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.37 E-value=9.9e-05 Score=48.14 Aligned_cols=20 Identities=40% Similarity=0.574 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
-++++|++||||||+++.+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~ 23 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLA 23 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 47899999999999999865
No 267
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.37 E-value=0.00011 Score=48.50 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=19.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~ 34 (176)
...|+|+|.+||||||+++.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~ 39 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIA 39 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999865
No 268
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.35 E-value=0.00013 Score=48.10 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
..|+|+|++||||||+++.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998654
No 269
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.34 E-value=0.00011 Score=49.43 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++++|++|||||||++. +.|-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~-l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYI-LGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHH-HTTSS
T ss_pred EEEEECCCCCCHHHHHHH-HhcCC
Confidence 478999999999999997 44544
No 270
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.34 E-value=0.00014 Score=48.30 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=20.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
+...|+|+|++|||||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999997543
No 271
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.34 E-value=0.00012 Score=48.72 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
++|+|+|++||||||+.+.+.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999999864
No 272
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.34 E-value=0.00018 Score=47.69 Aligned_cols=23 Identities=26% Similarity=0.187 Sum_probs=20.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHh
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
+...|+|.|.+||||||+.+.+.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~ 31 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLV 31 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHH
Confidence 45689999999999999999865
No 273
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.34 E-value=0.00012 Score=48.34 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=19.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~ 34 (176)
.-.|+|+|++||||||+++.+.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~ 50 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVA 50 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3569999999999999999864
No 274
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.33 E-value=0.00022 Score=46.97 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHh
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
....|+|.|.+||||||+.+.+.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 44679999999999999998865
No 275
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.33 E-value=0.00013 Score=47.41 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
..|+|.|++||||||+.+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998653
No 276
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.32 E-value=0.00014 Score=48.55 Aligned_cols=21 Identities=38% Similarity=0.528 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
++|+|+|++||||||+.+.+.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999999864
No 277
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.32 E-value=0.00015 Score=47.25 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~ 34 (176)
...|++.|.+||||||+.+.+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999865
No 278
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.32 E-value=0.00014 Score=47.94 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
-.|+++|++||||||+.+.+.
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 479999999999999999865
No 279
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.31 E-value=0.00012 Score=47.89 Aligned_cols=21 Identities=29% Similarity=0.578 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
+++++|++|+|||||++.+..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 589999999999999998553
No 280
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.31 E-value=0.00014 Score=49.56 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++++|++|||||||++. +.|-.
T Consensus 26 ~~~liG~nGsGKSTLl~~-l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLEL-IAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHH-HHTSS
T ss_pred EEEEECCCCCCHHHHHHH-HhCCC
Confidence 478999999999999997 44543
No 281
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.30 E-value=0.0002 Score=46.61 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=20.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
...+|+++|.+||||||+.+.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998654
No 282
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.30 E-value=0.00016 Score=46.97 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=19.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~ 34 (176)
...|+++|++||||||+.+.+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3479999999999999999865
No 283
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.30 E-value=0.00018 Score=46.91 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~ 34 (176)
...|+++|.+||||||+.+.+.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALA 26 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999865
No 284
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.30 E-value=0.0002 Score=46.51 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=20.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHh
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
....|+++|.+||||||+.+.+.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999999865
No 285
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.29 E-value=0.00019 Score=47.25 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=21.8
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
++.....|+|+|.+||||||+.+.+..
T Consensus 4 ~~~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 4 EAKHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp --CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cccCceEEEEECCCCCCHHHHHHHHHH
Confidence 344567899999999999999998664
No 286
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.29 E-value=0.00014 Score=50.52 Aligned_cols=23 Identities=30% Similarity=0.619 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++|+|++|||||||++. +.|-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~-l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQN-FNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHH-HTTSS
T ss_pred EEEEECCCCCCHHHHHHH-HHcCC
Confidence 389999999999999997 44543
No 287
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.28 E-value=0.00015 Score=50.07 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++|+|++|||||||++. +.|-.
T Consensus 34 ~~~liG~nGsGKSTLlk~-l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRC-INFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHH-HTTSS
T ss_pred EEEEECCCCCCHHHHHHH-HhcCC
Confidence 478999999999999997 44543
No 288
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.28 E-value=0.00017 Score=48.22 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
..+|+++|.+||||||+.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998643
No 289
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.28 E-value=0.00021 Score=48.69 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
+..+|+|.|++||||||+.+++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999998753
No 290
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.28 E-value=0.00015 Score=48.42 Aligned_cols=23 Identities=30% Similarity=0.483 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++++|++|+|||||++. +.|-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~-l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKT-ISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHH-HTTSS
T ss_pred EEEEECCCCCCHHHHHHH-HhcCC
Confidence 478999999999999997 44544
No 291
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.28 E-value=0.00014 Score=52.25 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~ 36 (176)
.++++|++|||||||+|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcc
Confidence 6899999999999999986643
No 292
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.27 E-value=0.00016 Score=46.71 Aligned_cols=22 Identities=36% Similarity=0.450 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.-++++|++|+|||||+++++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 3588999999999999999764
No 293
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.27 E-value=0.00015 Score=50.10 Aligned_cols=23 Identities=35% Similarity=0.663 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++++|++|||||||++.+ .|-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l-~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLL-TGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHH-TSSS
T ss_pred EEEEECCCCCcHHHHHHHH-hcCC
Confidence 3889999999999999974 4443
No 294
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.27 E-value=0.00017 Score=47.61 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.+|+|+|.+||||||+.+.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999998654
No 295
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.26 E-value=0.00017 Score=48.93 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++|+|++|||||||++. +.|-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~-l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSA-LLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHH-HTTCS
T ss_pred EEEEECCCCCCHHHHHHH-HhcCC
Confidence 589999999999999997 44443
No 296
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.26 E-value=0.00022 Score=47.23 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
...|+|.|.+||||||+++.+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999998653
No 297
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.26 E-value=0.00015 Score=49.92 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
=.++|+|++|||||||++.+..
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHH
Confidence 3689999999999999998553
No 298
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.26 E-value=0.00018 Score=47.85 Aligned_cols=22 Identities=41% Similarity=0.528 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.+|+++|+|||||+|...++..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998653
No 299
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.26 E-value=0.00017 Score=46.92 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.|+|.|.+||||||+++.+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998653
No 300
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.26 E-value=0.00016 Score=49.75 Aligned_cols=23 Identities=35% Similarity=0.696 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++++|++|||||||++. +.|-.
T Consensus 35 ~~~liG~nGsGKSTLlk~-l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINV-ITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHH-HTTSS
T ss_pred EEEEECCCCCCHHHHHHH-HhCCC
Confidence 488999999999999997 44443
No 301
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.25 E-value=0.00029 Score=45.82 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=21.1
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHh
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
..+...|+++|.+||||||+++.+.
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~ 34 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLA 34 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHH
Confidence 3456789999999999999999854
No 302
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.24 E-value=0.00019 Score=49.11 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++|+|++|||||||++. +.|-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~-l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKL-IQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHH-HTTSS
T ss_pred EEEEECCCCCCHHHHHHH-HhcCC
Confidence 488999999999999997 44443
No 303
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.24 E-value=0.00019 Score=48.92 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++|+|++|+|||||++.+ .|-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l-~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLL-ERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHH-TTSS
T ss_pred EEEEECCCCCCHHHHHHHH-hcCC
Confidence 5899999999999999974 4443
No 304
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.24 E-value=0.00025 Score=49.58 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=21.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
....-|++.|++||||||+.+++..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999753
No 305
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.24 E-value=0.00017 Score=48.66 Aligned_cols=23 Identities=35% Similarity=0.686 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++|+|++|+|||||++. +.|-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~-l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMM-IMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHH-HTTSS
T ss_pred EEEEECCCCCCHHHHHHH-HhCCC
Confidence 488999999999999997 44544
No 306
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.24 E-value=0.00017 Score=49.00 Aligned_cols=20 Identities=40% Similarity=0.782 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
-++++|++|||||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 48899999999999999866
No 307
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.24 E-value=0.00019 Score=47.18 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.|+|.|.+||||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998653
No 308
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.24 E-value=0.00017 Score=47.52 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=19.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHh
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
+.-.|+++|++||||||+.+.+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La 46 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALN 46 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999854
No 309
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.23 E-value=0.00018 Score=50.69 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
=.++|+|++|+|||||++.+.
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~ 147 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLI 147 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 368999999999999999855
No 310
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.23 E-value=0.00014 Score=46.99 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=19.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~ 34 (176)
.-.++++|++|+|||||++.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~ 59 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATL 59 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999999854
No 311
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.23 E-value=0.00018 Score=49.67 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++|+|++|||||||++. +.|-.
T Consensus 52 i~~liG~NGsGKSTLlk~-l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRC-LNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHH-HTTSS
T ss_pred EEEEEcCCCCcHHHHHHH-HHcCC
Confidence 478999999999999997 44544
No 312
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.23 E-value=0.0002 Score=48.04 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
..|+|+|++||||||+.+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998653
No 313
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.22 E-value=0.00024 Score=45.87 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=19.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHh
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
....|+++|.+|+||||+.+.+.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 34579999999999999999865
No 314
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.22 E-value=0.0002 Score=47.76 Aligned_cols=22 Identities=18% Similarity=0.370 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.+|+|.|.+||||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998653
No 315
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.22 E-value=0.00019 Score=48.88 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++++|++|+|||||++. +.|-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~-l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSA-IAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHH-HTTSS
T ss_pred EEEEECCCCCCHHHHHHH-HhCCC
Confidence 488999999999999997 44543
No 316
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.21 E-value=0.00015 Score=48.26 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.++++|++|+|||||++.+.+
T Consensus 24 ~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998553
No 317
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.21 E-value=0.0002 Score=49.06 Aligned_cols=23 Identities=39% Similarity=0.686 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++++|++|+|||||++. +.|-.
T Consensus 28 ~~~liG~NGsGKSTLlk~-l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLAR-MAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHH-HTTSS
T ss_pred EEEEECCCCCcHHHHHHH-HhCCC
Confidence 478999999999999997 55544
No 318
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.21 E-value=0.0002 Score=49.26 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++|+|++|+|||||++. +.|-.
T Consensus 43 i~~l~G~NGsGKSTLlk~-l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRI-ISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHH-HTTSS
T ss_pred EEEEECCCCCCHHHHHHH-HhcCC
Confidence 488999999999999997 44443
No 319
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.20 E-value=0.00024 Score=46.94 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
+.|+++|++||||||+.+.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998654
No 320
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.19 E-value=0.00022 Score=49.10 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++|+|++|+|||||++.+ .|-.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l-~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLL-YRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHH-TTSS
T ss_pred EEEEECCCCCCHHHHHHHH-hccC
Confidence 5899999999999999974 4443
No 321
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.19 E-value=0.00021 Score=48.98 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
.++|+|++|+|||||++.+.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~ 50 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILA 50 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48899999999999999744
No 322
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.18 E-value=0.00022 Score=49.34 Aligned_cols=20 Identities=30% Similarity=0.461 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
.++|+|++|+|||||++.+.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~ 67 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLA 67 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48899999999999999744
No 323
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.18 E-value=0.0002 Score=48.01 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
-++|+|++|+|||||++.+..
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999998654
No 324
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.18 E-value=0.00021 Score=45.99 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
+|+|+|++||||||+.+.+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 69999999999999999864
No 325
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.18 E-value=0.00022 Score=49.48 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++|+|++|+|||||++. +.|-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~-l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAAL-LQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHH-HTTSS
T ss_pred EEEEECCCCCCHHHHHHH-HhcCC
Confidence 488999999999999997 44443
No 326
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.17 E-value=0.00024 Score=49.41 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++|+|++|+|||||++. +.|-.
T Consensus 49 ~~~liG~NGsGKSTLlk~-l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNI-LNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHH-HTTSS
T ss_pred EEEEECCCCCcHHHHHHH-HhCCC
Confidence 488999999999999997 44443
No 327
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.17 E-value=0.00038 Score=48.75 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=21.0
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHh
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
..+...|+|+|++|||||||++.+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3456789999999999999998754
No 328
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.17 E-value=0.00043 Score=45.78 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=20.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
+...|+|+|.+||||||+++.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999998654
No 329
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.16 E-value=0.00023 Score=48.82 Aligned_cols=23 Identities=35% Similarity=0.628 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++++|++|+|||||++. +.|-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~-l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDL-LLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHH-HTTSS
T ss_pred EEEEECCCCCCHHHHHHH-HhCCC
Confidence 478999999999999997 54544
No 330
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.16 E-value=0.00026 Score=47.57 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~ 34 (176)
...|+|+|.+||||||+.+.+.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3679999999999999999865
No 331
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.16 E-value=0.00011 Score=47.29 Aligned_cols=20 Identities=45% Similarity=0.718 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
.++|+|++|||||||++.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~ 23 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMM 23 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999855
No 332
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.15 E-value=0.00023 Score=50.15 Aligned_cols=21 Identities=29% Similarity=0.627 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
-.++++|++|+|||||+|.+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 458999999999999999977
No 333
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.15 E-value=0.00014 Score=49.11 Aligned_cols=20 Identities=40% Similarity=0.566 Sum_probs=14.3
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
-++|+|++|||||||++.+.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EEEEECSCC----CHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999866
No 334
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.14 E-value=0.00024 Score=49.06 Aligned_cols=23 Identities=30% Similarity=0.665 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++++|++|+|||||++. +.|-.
T Consensus 35 ~~~liG~nGsGKSTLl~~-i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQI-VAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHH-HTTSS
T ss_pred EEEEECCCCCcHHHHHHH-HhCCC
Confidence 488999999999999997 44443
No 335
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.14 E-value=0.00025 Score=47.49 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
..|+|+|++||||||+.+.+.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999865
No 336
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.14 E-value=0.00032 Score=45.85 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=19.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHh
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
+...|+++|.+||||||+.+.+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999999865
No 337
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.14 E-value=0.00023 Score=50.09 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.++++|++|+|||||+|.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHST
T ss_pred eEEEECCCCCcHHHHHHHhcc
Confidence 588999999999999998553
No 338
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.13 E-value=0.00034 Score=49.50 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=20.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHh
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
.+..-|+|+|++|||||||++.+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~ 111 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQ 111 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHH
Confidence 455789999999999999999754
No 339
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.12 E-value=0.00019 Score=46.38 Aligned_cols=22 Identities=32% Similarity=0.185 Sum_probs=15.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~ 34 (176)
...|++.|.+||||||+.+.+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CCEEEEECCC----CHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999864
No 340
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.12 E-value=0.00035 Score=46.00 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
...|+|.|.+||||||+++.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999998654
No 341
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.12 E-value=0.00031 Score=44.72 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
+|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998653
No 342
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.11 E-value=0.00024 Score=51.39 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~ 34 (176)
.-+++|+|++|+|||||++.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~ 191 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLA 191 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999744
No 343
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.10 E-value=0.00032 Score=48.39 Aligned_cols=22 Identities=41% Similarity=0.789 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGE 37 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~ 37 (176)
.++++|++|+|||||++.+ .|-
T Consensus 32 ~~~i~G~NGsGKSTLlk~l-~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAI-SGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHH-TTS
T ss_pred EEEEECCCCCCHHHHHHHH-hCC
Confidence 5789999999999999974 444
No 344
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.10 E-value=0.00067 Score=47.25 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHh
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
...+.|+|.|.+||||||+.+.+.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999865
No 345
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.10 E-value=0.00037 Score=47.48 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
...|+|+|+.|||||||++.+..
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999998654
No 346
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.09 E-value=0.00042 Score=47.44 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHh
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
+...|+|+|++||||||+++.+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999999865
No 347
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.08 E-value=0.00036 Score=47.81 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=20.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHh
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
.....|+++|++||||||+.+.+.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~ 53 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQ 53 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999864
No 348
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.08 E-value=0.00035 Score=44.84 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
..+.++|.+|||||||+.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999663
No 349
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.07 E-value=0.00036 Score=46.83 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
.|+|.|.+||||||+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999865
No 350
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.07 E-value=0.0004 Score=46.05 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHh
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
+...|+|.|.+||||||+++.+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~ 30 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLV 30 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999865
No 351
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.07 E-value=0.00037 Score=45.05 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.-.+++.|++|+|||+|++.+..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998654
No 352
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.06 E-value=0.00022 Score=50.28 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++|+|++|+|||||++. +.|-+
T Consensus 82 ~vaivG~sGsGKSTLl~l-l~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRL-LFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHH-HTTSS
T ss_pred EEEEECCCCchHHHHHHH-HHcCC
Confidence 589999999999999997 44443
No 353
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.06 E-value=0.00042 Score=46.81 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHh
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
...+|+|+|.+||||||+.+.+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 44689999999999999999865
No 354
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.06 E-value=0.0005 Score=48.79 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=20.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHh
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
..++-|+|+|++|||||||++.+.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999998753
No 355
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.05 E-value=0.00055 Score=44.48 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
..|++.|.+||||||+.+.+..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998653
No 356
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.04 E-value=0.00035 Score=47.91 Aligned_cols=20 Identities=25% Similarity=0.252 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
-|+|+|++|||||||...+.
T Consensus 3 li~I~G~~GSGKSTla~~La 22 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIA 22 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 47899999999999999865
No 357
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.04 E-value=0.00034 Score=50.36 Aligned_cols=23 Identities=43% Similarity=0.644 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
-++++|++|||||||++. +.|-.
T Consensus 32 ~~~llGpsGsGKSTLLr~-iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRC-LAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHH-HHTSS
T ss_pred EEEEECCCCchHHHHHHH-HhcCC
Confidence 378999999999999997 44443
No 358
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.02 E-value=0.00027 Score=44.40 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
-.++++|++|+|||+|++.+..
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999998553
No 359
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.02 E-value=0.00035 Score=48.47 Aligned_cols=19 Identities=32% Similarity=0.517 Sum_probs=17.7
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 030504 16 LVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~ 34 (176)
++++|++|+|||||++.+.
T Consensus 47 vlL~Gp~GtGKTtLakala 65 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVA 65 (274)
T ss_dssp EEEESSTTSCHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 9999999999999999854
No 360
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.02 E-value=0.0004 Score=48.61 Aligned_cols=23 Identities=35% Similarity=0.686 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++|+|++|+|||||++. +.|-.
T Consensus 66 ~~~i~G~NGsGKSTLlk~-l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMM-IMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHH-HTTSS
T ss_pred EEEEECCCCCcHHHHHHH-HhcCC
Confidence 488999999999999997 44443
No 361
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.02 E-value=0.00035 Score=50.33 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.++|+|++|||||||++.++.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999998653
No 362
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.02 E-value=0.00047 Score=47.16 Aligned_cols=24 Identities=17% Similarity=0.401 Sum_probs=20.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
..+.|+|.|.+||||||+.+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998654
No 363
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.01 E-value=0.00055 Score=45.13 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=19.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHh
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
+..-|+|+|++||||||+++.+.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~ 43 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLS 43 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 44679999999999999999864
No 364
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.01 E-value=0.00039 Score=50.13 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
-++|+|++|||||||++. +.|-.
T Consensus 56 i~~IiGpnGaGKSTLlr~-i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRC-VNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHH-HHTSS
T ss_pred EEEEEcCCCchHHHHHHH-HhcCC
Confidence 378999999999999997 44443
No 365
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.01 E-value=0.00045 Score=46.72 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=20.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHh
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
...+.|+|.|++||||||+.+.+.
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 356789999999999999999864
No 366
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.00 E-value=0.00043 Score=46.20 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
.+|+++|.+||||||+.+.+.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999864
No 367
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.00 E-value=0.00057 Score=48.15 Aligned_cols=84 Identities=10% Similarity=0.044 Sum_probs=46.6
Q ss_pred EEEEEeCCCcccccc------------ccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCC
Q 030504 63 RFYCWDTAGQEKFGG------------LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (176)
Q Consensus 63 ~~~~~D~~g~~~~~~------------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~ 130 (176)
...+.||+|...... ..++.....+.++++.|+..... +...+..+.+.. +. .++++||.|..
T Consensus 186 d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~---~~~~~~~~~~~~-~~-t~iivTh~d~~ 260 (304)
T 1rj9_A 186 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN---GLEQAKKFHEAV-GL-TGVIVTKLDGT 260 (304)
T ss_dssp SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH---HHHHHHHHHHHH-CC-SEEEEECTTSS
T ss_pred CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH---HHHHHHHHHHHc-CC-cEEEEECCccc
Confidence 356889999532211 11223345777888999876532 223333333221 33 45667998865
Q ss_pred ccccCHHHHHHHHHcCCeEEEec
Q 030504 131 NRQVKAKQVTFHRKKNLQYYEIS 153 (176)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~S 153 (176)
.+ ...........+.++..++
T Consensus 261 a~--gg~~l~i~~~~~~pi~~ig 281 (304)
T 1rj9_A 261 AK--GGVLIPIVRTLKVPIKFVG 281 (304)
T ss_dssp CC--CTTHHHHHHHHCCCEEEEE
T ss_pred cc--ccHHHHHHHHHCCCeEEEe
Confidence 32 2344566666777776664
No 368
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.99 E-value=0.00045 Score=45.20 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
...|++.|.+||||||+.+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998653
No 369
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.99 E-value=0.0019 Score=47.89 Aligned_cols=64 Identities=19% Similarity=0.235 Sum_probs=39.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhc------------------CCCC---CccccceeEEEeEEEEEe---cCcEEEEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLT------------------GEFE---KKYEPTIGVEVHPLDFFT---NCGKIRFYC 66 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~------------------~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 66 (176)
.+-.=|.|+|+.++|||+|+|.++. ..|. ....-|.|+-.....+.. ++....+.+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vll 144 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEE
T ss_pred CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEE
Confidence 3555677999999999999996541 1121 112224454433322222 456788999
Q ss_pred EeCCCccc
Q 030504 67 WDTAGQEK 74 (176)
Q Consensus 67 ~D~~g~~~ 74 (176)
+||.|...
T Consensus 145 lDTEG~~d 152 (457)
T 4ido_A 145 MDTQGTFD 152 (457)
T ss_dssp EEECCBTC
T ss_pred EeccCCCC
Confidence 99999643
No 370
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.97 E-value=0.00043 Score=49.79 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
-++++|++|||||||++.+ .|-.
T Consensus 43 ~~~llGpnGsGKSTLLr~i-aGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLI-AGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHH-HTSS
T ss_pred EEEEECCCCCcHHHHHHHH-hCCC
Confidence 3789999999999999974 4443
No 371
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.97 E-value=0.00043 Score=47.28 Aligned_cols=19 Identities=32% Similarity=0.592 Sum_probs=17.7
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 030504 16 LVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~ 34 (176)
++++|++|+|||||++.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~ 70 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVA 70 (254)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 9999999999999999855
No 372
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.97 E-value=0.00043 Score=48.74 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=19.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
+.--++++|++||||||+++.+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345789999999999999998543
No 373
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.97 E-value=0.0005 Score=44.79 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998654
No 374
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.96 E-value=0.00045 Score=50.13 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
-++++|++|||||||++.+ .|-.
T Consensus 31 ~~~llGpsGsGKSTLLr~i-aGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMI-AGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHH-HTSS
T ss_pred EEEEEcCCCchHHHHHHHH-HcCC
Confidence 3789999999999999974 4443
No 375
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.96 E-value=0.00045 Score=49.25 Aligned_cols=20 Identities=35% Similarity=0.818 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
.++|+|++|+|||||++.+.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~ 192 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIM 192 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999854
No 376
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.95 E-value=0.00063 Score=43.88 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=20.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
+...|+++|.+||||||+.+.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998543
No 377
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.95 E-value=0.0005 Score=43.98 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.|++.|.+||||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998653
No 378
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.95 E-value=0.00043 Score=49.98 Aligned_cols=21 Identities=38% Similarity=0.729 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.++|+|++|+|||||++.+..
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999998543
No 379
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.95 E-value=0.00046 Score=49.71 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
-++++|++|||||||++.+ .|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~i-aGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLML-AGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHH-HTSS
T ss_pred EEEEEcCCCchHHHHHHHH-HCCC
Confidence 4789999999999999974 4443
No 380
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.95 E-value=0.00049 Score=44.58 Aligned_cols=21 Identities=43% Similarity=0.582 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.|+|+|.+||||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998653
No 381
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.94 E-value=0.00048 Score=49.71 Aligned_cols=23 Identities=26% Similarity=0.599 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
-++++|++|||||||++.+ .|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~i-aGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTI-AGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHH-HTSS
T ss_pred EEEEECCCCchHHHHHHHH-hcCC
Confidence 4789999999999999974 4443
No 382
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.94 E-value=0.0007 Score=47.77 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=20.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
+..-|+|+|++|||||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999997543
No 383
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.94 E-value=0.00017 Score=47.85 Aligned_cols=20 Identities=35% Similarity=0.522 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
-|+|.|.+||||||+++.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~ 21 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLS 21 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 48999999999999999864
No 384
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.94 E-value=0.00063 Score=46.77 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
..|+++|.+||||||+.+.+..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998653
No 385
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.94 E-value=0.00049 Score=44.95 Aligned_cols=21 Identities=24% Similarity=0.321 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
-|++.|.+||||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998653
No 386
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.93 E-value=0.00053 Score=45.87 Aligned_cols=20 Identities=25% Similarity=0.557 Sum_probs=16.9
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 030504 16 LVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~ 35 (176)
|+|+|+|||||+|...++..
T Consensus 32 I~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56789999999999988553
No 387
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.93 E-value=0.0005 Score=49.86 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
-.++|+|++||||||+++.+..
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3699999999999999998653
No 388
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.92 E-value=0.00051 Score=46.00 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
-++++|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999998763
No 389
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.92 E-value=0.00061 Score=43.46 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.|+|.|.+||||||+.+.+..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998653
No 390
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.92 E-value=0.00072 Score=45.08 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.+.|+|.|.+||||||+.+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998654
No 391
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.91 E-value=0.00053 Score=49.66 Aligned_cols=20 Identities=40% Similarity=0.552 Sum_probs=17.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
-++++|++|||||||++.+.
T Consensus 39 ~~~llGpnGsGKSTLLr~ia 58 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIA 58 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHH
Confidence 47899999999999999744
No 392
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.91 E-value=0.00052 Score=49.72 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
-++++|++|||||||++.+ .|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~i-aGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMI-AGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHH-HTSS
T ss_pred EEEEECCCCcHHHHHHHHH-HcCC
Confidence 3789999999999999974 4443
No 393
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.87 E-value=0.00045 Score=44.49 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=19.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.-.+++.|++|+|||+|++.+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998654
No 394
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.85 E-value=0.00058 Score=51.56 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.++|+|++||||||+++.++.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 599999999999999998553
No 395
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.85 E-value=0.00058 Score=50.26 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
-++|+|++|||||||++.++.
T Consensus 169 ii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998654
No 396
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.85 E-value=0.00059 Score=48.68 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.++++|++|+|||||++.+.+
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 489999999999999998553
No 397
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.84 E-value=0.00064 Score=47.14 Aligned_cols=19 Identities=32% Similarity=0.592 Sum_probs=17.7
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 030504 16 LVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~ 34 (176)
++++|++|+|||||++.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~ 94 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVA 94 (278)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHH
Confidence 9999999999999999855
No 398
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.83 E-value=0.00072 Score=45.44 Aligned_cols=23 Identities=13% Similarity=0.231 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.-.+++.|++|+|||+|++.+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998653
No 399
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.83 E-value=0.00071 Score=43.70 Aligned_cols=20 Identities=35% Similarity=0.483 Sum_probs=17.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
-.+|+|+.|+|||||+..+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~ 47 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAIL 47 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999864
No 400
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.83 E-value=0.00094 Score=45.00 Aligned_cols=25 Identities=32% Similarity=0.585 Sum_probs=20.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.+..-|+|.|+.||||||+++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3456799999999999999998543
No 401
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.82 E-value=0.00063 Score=47.60 Aligned_cols=21 Identities=29% Similarity=0.632 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
-++|+|++|+|||||+..+..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 488999999999999998654
No 402
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.82 E-value=0.00044 Score=49.64 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
-++++|++|||||||++.+ .|-.
T Consensus 28 ~~~llGpnGsGKSTLLr~i-aGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELI-AGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHH-HTSS
T ss_pred EEEEECCCCccHHHHHHHH-HcCC
Confidence 4789999999999999974 4443
No 403
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.82 E-value=0.00092 Score=43.86 Aligned_cols=24 Identities=25% Similarity=0.309 Sum_probs=21.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
-++.|.++|..||||||+.+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 468899999999999999998654
No 404
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.81 E-value=0.00066 Score=46.47 Aligned_cols=21 Identities=38% Similarity=0.365 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
-+|+|+|++|+||||+.+.+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La 69 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMA 69 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999864
No 405
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.81 E-value=0.00068 Score=49.42 Aligned_cols=20 Identities=30% Similarity=0.669 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
.++++|++|||||||++.+.
T Consensus 49 ~~~llGpsGsGKSTLLr~ia 68 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFL 68 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHh
Confidence 48999999999999999754
No 406
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.81 E-value=0.00089 Score=45.79 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
-.+++.|++|+|||+|++.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la 66 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIA 66 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHH
Confidence 459999999999999999865
No 407
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.80 E-value=0.00075 Score=44.84 Aligned_cols=21 Identities=24% Similarity=0.181 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999775
No 408
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.80 E-value=0.00071 Score=48.77 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=20.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
+.--++++|++||||||++..+..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 345799999999999999998543
No 409
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.77 E-value=0.00089 Score=44.01 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
-.+++.|++|+|||+|+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998653
No 410
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.76 E-value=0.00084 Score=45.33 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~ 36 (176)
-++|+|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5889999999999999987653
No 411
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.76 E-value=0.00061 Score=48.31 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~ 36 (176)
-++|+|..|||||||++.++..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 4678999999999999997754
No 412
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.76 E-value=0.0011 Score=43.96 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=19.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHh
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
+...|+++|.+|+||||+.+.+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~ 46 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELE 46 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999854
No 413
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.75 E-value=0.00079 Score=50.45 Aligned_cols=92 Identities=13% Similarity=0.041 Sum_probs=50.1
Q ss_pred EEEEEEeCCCcccccc-cc------cc----c-cccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCC
Q 030504 62 IRFYCWDTAGQEKFGG-LR------DG----Y-YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129 (176)
Q Consensus 62 ~~~~~~D~~g~~~~~~-~~------~~----~-~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl 129 (176)
+.+.++||+|...... .. .. . ....+-+++|.|+.... +.......+... .+.. .+|+||.|-
T Consensus 376 ~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq---~al~~ak~f~~~-~~it-gvIlTKLD~ 450 (503)
T 2yhs_A 376 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ---NAVSQAKLFHEA-VGLT-GITLTKLDG 450 (503)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH---HHHHHHHHHHHH-TCCS-EEEEECGGG
T ss_pred CCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccH---HHHHHHHHHHhh-cCCC-EEEEEcCCC
Confidence 4577899999642211 10 00 1 11256788899977542 222333333332 1333 456899985
Q ss_pred CccccCHHHHHHHHHcCCeEEEeccCCCCChHH
Q 030504 130 KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
. ........+....+.++.++ -+|+++++
T Consensus 451 t--akgG~~lsi~~~~~~PI~fi--g~Ge~vdD 479 (503)
T 2yhs_A 451 T--AKGGVIFSVADQFGIPIRYI--GVGERIED 479 (503)
T ss_dssp C--SCCTHHHHHHHHHCCCEEEE--ECSSSGGG
T ss_pred c--ccccHHHHHHHHHCCCEEEE--ecCCChhh
Confidence 3 23334567777778877764 45555544
No 414
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.74 E-value=0.0014 Score=44.23 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHh
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
+..-|++.|++||||||+++.+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~ 47 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVY 47 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Confidence 45679999999999999999855
No 415
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.73 E-value=0.0011 Score=46.36 Aligned_cols=22 Identities=23% Similarity=0.538 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
..|+++|.+||||||+.+++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998764
No 416
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.72 E-value=0.0013 Score=46.08 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=19.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHh
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
.+..+++.|+||+|||+|++.+.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA 57 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVF 57 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34678888999999999999855
No 417
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.71 E-value=0.0013 Score=46.15 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=20.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHh
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
.....+++.|++|+|||++++.+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHH
Confidence 345679999999999999998644
No 418
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.70 E-value=0.00043 Score=49.80 Aligned_cols=23 Identities=39% Similarity=0.683 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
-++++|++|||||||++. +.|-.
T Consensus 33 ~~~llGpnGsGKSTLLr~-iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRI-IAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHH-HHTSS
T ss_pred EEEEECCCCCcHHHHHHH-HhCCC
Confidence 478999999999999997 44543
No 419
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.70 E-value=0.0018 Score=47.73 Aligned_cols=24 Identities=42% Similarity=0.628 Sum_probs=20.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
...-|+++|.+||||||+.+++..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 445689999999999999999654
No 420
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.68 E-value=0.001 Score=47.72 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~ 36 (176)
+++|+|++|+|||||++.+.+.
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999986544
No 421
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.68 E-value=0.0013 Score=46.57 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
..|+|+|++|||||||...+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988653
No 422
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.00084 Score=50.03 Aligned_cols=21 Identities=38% Similarity=0.624 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.++|+|++|||||||++.+.+
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999997543
No 423
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.66 E-value=0.0012 Score=41.10 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
...|++.|++|+|||++++.+..
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999998553
No 424
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.63 E-value=0.0011 Score=44.37 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.++|.|++|+|||+|++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998653
No 425
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.63 E-value=0.0018 Score=45.49 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=20.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
+.-.+++.|++|+|||++++.+..
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHH
T ss_pred CceEEEEECCCCcCHHHHHHHHHH
Confidence 445799999999999999998654
No 426
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.61 E-value=0.0012 Score=45.90 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999998764
No 427
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.61 E-value=0.0015 Score=44.64 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.-.+++.|++|+|||++++.+..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999998653
No 428
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.61 E-value=0.0014 Score=45.51 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.-.+++.|++|+|||+|++.+..
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 45699999999999999998653
No 429
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.61 E-value=0.0012 Score=43.66 Aligned_cols=20 Identities=35% Similarity=0.401 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 030504 16 LVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~ 35 (176)
+++.|++|+|||+++..+..
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998654
No 430
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.60 E-value=0.0013 Score=41.32 Aligned_cols=19 Identities=32% Similarity=0.705 Sum_probs=16.7
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 030504 16 LVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~ 34 (176)
.+|+|+.|+|||||+.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4789999999999999854
No 431
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.59 E-value=0.0016 Score=44.05 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=21.2
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
..+...|+|+|.+|+||||+.+.+..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34556899999999999999998653
No 432
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.59 E-value=0.0021 Score=44.39 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=21.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.....+++.|++|+|||+++..+..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 4556899999999999999998654
No 433
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.59 E-value=0.0013 Score=45.28 Aligned_cols=24 Identities=33% Similarity=0.324 Sum_probs=20.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHh
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
.+...|+|.|..||||||+++.+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~ 45 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILK 45 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTG
T ss_pred cCceEEEEECCCCCCHHHHHHHHH
Confidence 355789999999999999999854
No 434
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.58 E-value=0.0015 Score=45.67 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=20.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
+.-.+++.|++|+|||++++.+..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 346799999999999999998653
No 435
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.57 E-value=0.0011 Score=43.78 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=18.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
-.+++.|+||+|||+++.++.
T Consensus 59 n~ili~GPPGtGKTt~a~ala 79 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFI 79 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 359999999999999988754
No 436
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.57 E-value=0.0014 Score=43.13 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=20.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcC
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~ 36 (176)
....|+|+|++|+|||+|...+...
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3456999999999999999997643
No 437
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.56 E-value=0.0014 Score=44.35 Aligned_cols=21 Identities=38% Similarity=0.620 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
-++++|++|+|||||+.++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999887654
No 438
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.54 E-value=0.0016 Score=43.85 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=19.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
-++++.++|++||||||+..++..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 357899999999999999998643
No 439
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.52 E-value=0.0017 Score=45.58 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.-.+++.|++|+|||+|++.+..
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHH
Confidence 34699999999999999998653
No 440
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.52 E-value=0.00088 Score=46.89 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=17.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
+.+-|+|.|++||||||+.+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999998654
No 441
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.50 E-value=0.0016 Score=48.29 Aligned_cols=22 Identities=14% Similarity=0.279 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~ 36 (176)
+++|+|++|+|||||++.+.+.
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999975543
No 442
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.49 E-value=0.0017 Score=49.46 Aligned_cols=23 Identities=52% Similarity=0.728 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++++|++|+|||||++. +.|..
T Consensus 49 ~~~LvG~NGaGKSTLlk~-l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKI-LAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHH-HHTSS
T ss_pred EEEEECCCCCCHHHHHHH-HhCCC
Confidence 589999999999999997 44443
No 443
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.48 E-value=0.0013 Score=40.92 Aligned_cols=22 Identities=14% Similarity=0.264 Sum_probs=18.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~ 34 (176)
...|++.|++|+|||++++.+.
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGC
T ss_pred CCcEEEECCCCccHHHHHHHHH
Confidence 3469999999999999999743
No 444
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.48 E-value=0.0016 Score=49.99 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++++|++|+|||||++. +.|-.
T Consensus 371 ~~~ivG~sGsGKSTLl~~-l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASL-ITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHH-HTTTT
T ss_pred EEEEECCCCCCHHHHHHH-Hhhcc
Confidence 589999999999999997 44443
No 445
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.45 E-value=0.0016 Score=48.70 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
=-++|+|++|+|||||++.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 3578999999999999998653
No 446
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.44 E-value=0.0017 Score=49.40 Aligned_cols=21 Identities=38% Similarity=0.474 Sum_probs=18.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
=-++++|++|+|||||++.+.
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~ 46 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILA 46 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 358899999999999999744
No 447
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=96.43 E-value=0.0026 Score=46.51 Aligned_cols=23 Identities=35% Similarity=0.699 Sum_probs=21.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHH
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRH 33 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~ 33 (176)
...+|++++|...|||||++.++
T Consensus 38 ~~~~klLLLG~geSGKSTi~KQm 60 (402)
T 1azs_C 38 RATHRLLLLGAGESGKSTIVKQM 60 (402)
T ss_dssp TTEEEEEEEESTTSSHHHHHHHH
T ss_pred hccceEEEecCCCCchhhHHHHH
Confidence 46899999999999999999985
No 448
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.43 E-value=0.0017 Score=46.03 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
-.+++.|++|+|||+|++.+..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999999998653
No 449
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.42 E-value=0.0018 Score=45.50 Aligned_cols=86 Identities=10% Similarity=0.055 Sum_probs=47.1
Q ss_pred EEEEEEEeCCCcccccc-cc---ccccc--cccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc
Q 030504 61 KIRFYCWDTAGQEKFGG-LR---DGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~-~~---~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~ 134 (176)
.+.+.++||+|...... .. ...+. ..+..++|+|.+.. .+.+..+...+.. -+ ..-+|.||.|.....
T Consensus 182 ~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~--l~-~~giVltk~D~~~~~- 255 (296)
T 2px0_A 182 EYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS--VP-VNQYIFTKIDETTSL- 255 (296)
T ss_dssp GSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS--SC-CCEEEEECTTTCSCC-
T ss_pred CCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc--CC-CCEEEEeCCCcccch-
Confidence 35688999999654321 11 11122 35778889987643 1223222222211 12 234567999976432
Q ss_pred CHHHHHHHHHcCCeEEEec
Q 030504 135 KAKQVTFHRKKNLQYYEIS 153 (176)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~S 153 (176)
..........+.++..++
T Consensus 256 -g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 256 -GSVFNILAESKIGVGFMT 273 (296)
T ss_dssp -HHHHHHHHTCSCCCSEEC
T ss_pred -hHHHHHHHHHCcCEEEEE
Confidence 355677777787766654
No 450
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.40 E-value=0.0019 Score=49.64 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++++|++|+|||||++.+ .|-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l-~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLF-TRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHH-hcCC
Confidence 5899999999999999974 4443
No 451
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.39 E-value=0.0023 Score=46.44 Aligned_cols=21 Identities=29% Similarity=0.257 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
-.++++|++|+|||||++.+.
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~ 190 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALL 190 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999855
No 452
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.37 E-value=0.002 Score=42.85 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.+.|+++|.+||||||+.+.+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999987643
No 453
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.37 E-value=0.0023 Score=42.08 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.|.|.|.+||||||+.+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998643
No 454
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.37 E-value=0.002 Score=46.35 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~ 36 (176)
-+.|+|++|+|||||+..+...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999986643
No 455
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.37 E-value=0.0019 Score=46.51 Aligned_cols=23 Identities=43% Similarity=0.499 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.-.++|.|++|+|||||++.+..
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998654
No 456
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.37 E-value=0.0025 Score=47.09 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHh
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
++-.|++.|+||+|||+|++++.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA 236 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACA 236 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHH
Confidence 34679999999999999999854
No 457
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.36 E-value=0.0024 Score=45.32 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=20.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
+.-.|++.|++|+|||+|++.+..
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHH
Confidence 346799999999999999998653
No 458
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.34 E-value=0.0023 Score=44.79 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.-.+++.|++|+|||++++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998653
No 459
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.34 E-value=0.0025 Score=45.15 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHh
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
+...+++.|++|+|||+|++.+.
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia 72 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVA 72 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHH
Confidence 34679999999999999999865
No 460
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.34 E-value=0.0022 Score=49.26 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++++|++|+|||||++. +.|-.
T Consensus 369 ~~~ivG~sGsGKSTll~~-l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINL-IPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTT-TTTSS
T ss_pred EEEEECCCCChHHHHHHH-HhcCC
Confidence 589999999999999996 44444
No 461
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.34 E-value=0.0022 Score=45.25 Aligned_cols=92 Identities=15% Similarity=0.066 Sum_probs=50.7
Q ss_pred EEEEEEeCCCcccccc-cc------c-----cccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCC
Q 030504 62 IRFYCWDTAGQEKFGG-LR------D-----GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129 (176)
Q Consensus 62 ~~~~~~D~~g~~~~~~-~~------~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl 129 (176)
+.+.++||||...... .. . ..-...+.+++|+|.... ++.......+.+. .+. .-+|.||.|-
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~---~~~l~~a~~~~~~-~~i-~gvVlTk~D~ 261 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG---QNGLVQAKIFKEA-VNV-TGIILTKLDG 261 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH---HHHHHHHHHHHHH-SCC-CEEEEECGGG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC---HHHHHHHHHHHhc-CCC-CEEEEeCCCC
Confidence 4578999999532111 00 0 011247888999998733 2222222333332 132 3456799996
Q ss_pred CccccCHHHHHHHHHcCCeEEEeccCCCCChHH
Q 030504 130 KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
... ...........+.++..++. |+.+++
T Consensus 262 ~~~--gG~~l~~~~~~~~Pi~~i~~--Ge~~~d 290 (306)
T 1vma_A 262 TAK--GGITLAIARELGIPIKFIGV--GEKAED 290 (306)
T ss_dssp CSC--TTHHHHHHHHHCCCEEEEEC--SSSGGG
T ss_pred ccc--hHHHHHHHHHHCCCEEEEeC--CCChhh
Confidence 432 23467778888888877743 444443
No 462
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.34 E-value=0.0027 Score=40.76 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~ 36 (176)
..-|++.|++|+||||+...+...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 356999999999999999987753
No 463
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.33 E-value=0.0021 Score=49.56 Aligned_cols=20 Identities=40% Similarity=0.488 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
.++++|++|+|||||++.+.
T Consensus 105 i~~LvGpNGaGKSTLLkiL~ 124 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILA 124 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHh
Confidence 58999999999999999744
No 464
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.33 E-value=0.0017 Score=50.02 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++++|++|+|||||++. +.|-.
T Consensus 372 ~~~ivG~sGsGKSTLl~~-l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSL-LLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHH-HTTSS
T ss_pred EEEEECCCCCCHHHHHHH-HhcCc
Confidence 589999999999999997 44443
No 465
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.32 E-value=0.0019 Score=46.19 Aligned_cols=20 Identities=40% Similarity=0.536 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 030504 16 LVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~ 35 (176)
+++.|++|+||||+++.+..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998654
No 466
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.32 E-value=0.0019 Score=49.83 Aligned_cols=23 Identities=43% Similarity=0.661 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++++|++|+|||||++. +.|-.
T Consensus 383 ~~~ivG~sGsGKSTll~~-l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNL-LMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHH-HTTSS
T ss_pred EEEEECCCCCcHHHHHHH-HhcCc
Confidence 589999999999999997 44444
No 467
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.32 E-value=0.0023 Score=46.29 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=16.8
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 030504 16 LVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~ 34 (176)
.+|+|+.|+|||||++.+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5689999999999999854
No 468
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.31 E-value=0.0028 Score=46.74 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=19.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~ 34 (176)
+-.|++.|+||+|||+|++++.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA 227 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVA 227 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 4569999999999999999855
No 469
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.28 E-value=0.0026 Score=46.00 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.++|.|++|+|||||++.+..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998653
No 470
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.28 E-value=0.0025 Score=45.52 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.-|+|+|++|||||||..++..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4699999999999999988653
No 471
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.27 E-value=0.003 Score=46.70 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=20.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHh
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
++-.|++.|+||+|||+|++++.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA 236 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVA 236 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHH
Confidence 44689999999999999999855
No 472
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.25 E-value=0.0021 Score=49.42 Aligned_cols=23 Identities=22% Similarity=0.538 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++++|++|+|||||++. +.|-.
T Consensus 371 ~~~ivG~sGsGKSTll~~-l~g~~ 393 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNL-IPRLI 393 (587)
T ss_dssp EEEEECSSSSSHHHHHHT-TTTSS
T ss_pred EEEEECCCCCCHHHHHHH-HhCCc
Confidence 589999999999999997 44443
No 473
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.25 E-value=0.0029 Score=40.96 Aligned_cols=21 Identities=14% Similarity=0.430 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 030504 16 LVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~~ 36 (176)
++|+|.++||||+|..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999997754
No 474
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.25 E-value=0.0024 Score=45.56 Aligned_cols=20 Identities=35% Similarity=0.471 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 030504 16 LVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~ 35 (176)
+++.|++|+||||+++.+..
T Consensus 49 ~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998654
No 475
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.24 E-value=0.0024 Score=48.43 Aligned_cols=19 Identities=37% Similarity=0.616 Sum_probs=17.6
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 030504 15 KLVIVGDGGTGKTTFVKRH 33 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~ 33 (176)
-++|+|++|+|||||++.|
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 4899999999999999986
No 476
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.23 E-value=0.0036 Score=48.35 Aligned_cols=23 Identities=57% Similarity=0.742 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++++|++|+|||||++. +.|..
T Consensus 119 ~~~LiG~NGsGKSTLlki-L~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKI-LAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHH-HTTSS
T ss_pred EEEEECCCCChHHHHHHH-HhCCC
Confidence 589999999999999997 44433
No 477
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.21 E-value=0.0029 Score=45.12 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
-|+|+|++|||||+|...+..
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998653
No 478
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.21 E-value=0.0027 Score=48.31 Aligned_cols=23 Identities=43% Similarity=0.681 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++|+|++|+|||||++.+ .|-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l-~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARIL-VGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHH-TTSS
T ss_pred EEEEECCCCCCHHHHHHHH-hCCC
Confidence 3789999999999999974 4443
No 479
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.18 E-value=0.0049 Score=46.70 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=20.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHh
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
....-|+++|.+|+||||+.+++.
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La 56 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLT 56 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345679999999999999999864
No 480
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.17 E-value=0.0032 Score=47.92 Aligned_cols=21 Identities=52% Similarity=0.635 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.++|+|+.|+|||||++.+.+
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~G 334 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAG 334 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999998543
No 481
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.17 E-value=0.0041 Score=44.82 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHh
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
+...+++.|++|+|||++++.+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia 72 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLA 72 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999854
No 482
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.15 E-value=0.004 Score=42.15 Aligned_cols=21 Identities=43% Similarity=0.499 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
..|++.|..||||||+++.+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~ 23 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLT 23 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHH
Confidence 569999999999999999865
No 483
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.15 E-value=0.0032 Score=45.32 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
-.+++.|++|+|||++++.+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998653
No 484
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.15 E-value=0.0029 Score=47.27 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=19.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.-+++++|++|+|||++++.+..
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999998653
No 485
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.15 E-value=0.0047 Score=43.52 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.-|+|+|++|||||+|...+..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 4588999999999999998653
No 486
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.14 E-value=0.0035 Score=44.99 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=18.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~ 34 (176)
..+|+++|++|+||||+...+.
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHH
Confidence 3579999999999999998643
No 487
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.14 E-value=0.0031 Score=48.70 Aligned_cols=21 Identities=52% Similarity=0.635 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.++|+|+.|+|||||++.+.+
T Consensus 384 i~~i~G~NGsGKSTLlk~l~G 404 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAG 404 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999997543
No 488
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.12 E-value=0.0034 Score=45.86 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=19.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHh
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
++-.|++.|+||+|||.|+.++.
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA 203 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVA 203 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHH
Confidence 34579999999999999999854
No 489
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.12 E-value=0.0031 Score=46.12 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
-++|+|++|+|||||+..+.
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 48899999999999999865
No 490
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.12 E-value=0.0038 Score=45.16 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=20.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
....+++.|++|+|||++++.+..
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998653
No 491
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.10 E-value=0.0032 Score=44.91 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 030504 16 LVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~ 35 (176)
+++.|++|+|||++++.+..
T Consensus 61 ~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998653
No 492
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.10 E-value=0.0036 Score=50.79 Aligned_cols=24 Identities=29% Similarity=0.567 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++|+|++|+|||||++.+.+|..
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 489999999999999999876643
No 493
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.10 E-value=0.0037 Score=44.11 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.-.+++.|++|+|||+|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988553
No 494
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.09 E-value=0.0036 Score=45.09 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=20.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
+.-.|++.|++|+|||+|++.+..
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHH
Confidence 345699999999999999998653
No 495
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.09 E-value=0.0034 Score=44.62 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
-++|.|+.|+|||||++.+..
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~ 53 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLN 53 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHH
Confidence 589999999999999999764
No 496
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.06 E-value=0.0028 Score=45.71 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.-.++|.|++|+|||++++.+..
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 44799999999999999998653
No 497
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.05 E-value=0.0013 Score=45.16 Aligned_cols=21 Identities=38% Similarity=0.532 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.+++.|++|+|||+|++.+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 489999999999999998654
No 498
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.05 E-value=0.0034 Score=44.66 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
-++|.|++|+|||+|++.+..
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~ 52 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGIN 52 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998764
No 499
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.05 E-value=0.0043 Score=44.69 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHh
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
+...+++.|++|+|||+|++.+.
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia 138 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIA 138 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999865
No 500
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.04 E-value=0.0051 Score=43.44 Aligned_cols=22 Identities=27% Similarity=0.184 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.-|+|+|++|||||+|...+..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHHHHH
Confidence 3588999999999999998654
Done!