Query 030505
Match_columns 176
No_of_seqs 117 out of 583
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 14:44:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030505.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030505hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04525 Tub_2: Tubby C 2; In 100.0 1.2E-37 2.6E-42 244.5 16.2 161 14-175 2-175 (187)
2 COG4894 Uncharacterized conser 100.0 6.2E-32 1.3E-36 200.0 5.7 134 25-176 5-141 (159)
3 PF03803 Scramblase: Scramblas 99.3 8.2E-10 1.8E-14 88.5 17.2 138 25-174 21-197 (221)
4 COG4894 Uncharacterized conser 98.8 1.9E-08 4.2E-13 75.2 7.0 74 20-95 24-97 (159)
5 PF04525 Tub_2: Tubby C 2; In 98.4 2.5E-06 5.5E-11 66.8 9.6 73 22-95 35-113 (187)
6 PF03803 Scramblase: Scramblas 97.1 0.005 1.1E-07 49.1 9.4 65 42-111 78-148 (221)
7 KOG0621 Phospholipid scramblas 95.2 1.1 2.4E-05 37.7 13.8 122 38-171 97-254 (292)
8 PF09008 Head_binding: Head bi 72.2 11 0.00025 27.1 4.9 68 4-81 36-105 (114)
9 KOG0621 Phospholipid scramblas 66.8 26 0.00056 29.6 6.8 42 41-82 189-236 (292)
10 PF02974 Inh: Protease inhibit 63.8 42 0.00092 23.3 6.5 32 63-97 61-92 (99)
11 PF06903 VirK: VirK protein; 62.7 24 0.00052 25.0 5.0 19 6-24 13-31 (100)
12 cd03676 Nudix_hydrolase_3 Memb 61.1 47 0.001 25.2 7.0 63 37-99 2-75 (180)
13 PF13860 FlgD_ig: FlgD Ig-like 58.2 17 0.00037 24.2 3.6 17 65-81 28-44 (81)
14 PRK15393 NUDIX hydrolase YfcD; 51.6 50 0.0011 25.3 5.7 56 41-97 11-74 (180)
15 TIGR02150 IPP_isom_1 isopenten 50.6 47 0.001 24.8 5.3 56 42-97 1-64 (158)
16 KOG3950 Gamma/delta sarcoglyca 50.4 18 0.00039 29.9 3.1 47 27-73 126-173 (292)
17 PF01947 DUF98: Protein of unk 49.9 17 0.00038 27.3 2.8 26 139-164 116-143 (149)
18 PF12396 DUF3659: Protein of u 47.5 73 0.0016 20.6 5.1 41 41-81 12-58 (64)
19 PF04790 Sarcoglycan_1: Sarcog 47.4 43 0.00092 27.8 4.9 21 38-58 116-137 (264)
20 PF01167 Tub: Tub family; Int 47.2 72 0.0016 26.1 6.2 74 76-154 9-88 (246)
21 PF07680 DoxA: TQO small subun 46.1 54 0.0012 24.4 4.8 42 41-88 32-73 (133)
22 PF15529 Toxin_49: Putative to 45.2 25 0.00053 24.4 2.7 21 38-58 28-48 (89)
23 PF09475 Dot_icm_IcmQ: Dot/Icm 43.1 8 0.00017 30.0 0.0 62 17-86 95-156 (179)
24 PRK12813 flgD flagellar basal 42.4 29 0.00063 28.1 3.1 16 65-80 127-142 (223)
25 PRK12816 flgG flagellar basal 41.5 32 0.00069 28.4 3.3 37 41-78 102-138 (264)
26 PF09000 Cytotoxic: Cytotoxic; 40.4 87 0.0019 21.5 4.7 33 44-80 35-67 (85)
27 PF05593 RHS_repeat: RHS Repea 39.5 71 0.0015 17.9 3.8 30 45-77 1-30 (38)
28 PRK12691 flgG flagellar basal 37.6 52 0.0011 27.0 4.0 37 41-78 102-138 (262)
29 cd00028 B_lectin Bulb-type man 37.6 1.3E+02 0.0028 21.1 5.7 12 41-52 66-77 (116)
30 smart00634 BID_1 Bacterial Ig- 37.3 1.1E+02 0.0024 20.6 5.0 9 43-51 25-33 (92)
31 smart00108 B_lectin Bulb-type 36.8 1.4E+02 0.0031 20.7 5.8 12 41-52 65-76 (114)
32 PF08269 Cache_2: Cache domain 35.3 6.7 0.00015 26.7 -1.4 37 41-77 58-94 (95)
33 PLN02552 isopentenyl-diphospha 35.2 1E+02 0.0023 25.2 5.4 57 41-97 24-93 (247)
34 PRK12640 flgF flagellar basal 35.2 39 0.00085 27.6 2.9 38 40-78 86-123 (246)
35 PF06355 Aegerolysin: Aegeroly 35.0 80 0.0017 23.3 4.3 31 145-175 70-114 (131)
36 PRK13211 N-acetylglucosamine-b 35.0 3E+02 0.0066 24.9 8.6 60 35-96 316-375 (478)
37 TIGR02488 flgG_G_neg flagellar 34.7 43 0.00094 27.4 3.1 37 41-78 100-136 (259)
38 TIGR03784 marine_sortase sorta 34.7 64 0.0014 25.0 3.9 35 61-95 110-145 (174)
39 PRK12817 flgG flagellar basal 33.8 51 0.0011 27.1 3.4 39 39-78 96-134 (260)
40 cd05828 Sortase_D_4 Sortase D 33.8 60 0.0013 23.4 3.4 35 62-96 64-98 (127)
41 PRK06655 flgD flagellar basal 33.8 69 0.0015 25.9 4.1 17 64-80 128-144 (225)
42 PF12690 BsuPI: Intracellular 33.4 36 0.00077 23.0 2.0 17 41-57 27-43 (82)
43 PRK12633 flgD flagellar basal 33.3 50 0.0011 26.7 3.2 17 64-80 131-147 (230)
44 cd06166 Sortase_D_5 Sortase D 33.0 68 0.0015 23.1 3.6 19 63-81 68-86 (126)
45 PF11906 DUF3426: Protein of u 32.6 78 0.0017 23.2 4.0 32 48-79 65-104 (149)
46 PF13511 DUF4124: Domain of un 32.3 38 0.00081 20.9 1.9 18 41-58 15-32 (60)
47 PF02972 Phycoerythr_ab: Phyco 31.6 21 0.00046 22.5 0.6 23 10-32 2-24 (57)
48 PRK12694 flgG flagellar basal 31.5 52 0.0011 27.0 3.1 37 41-78 102-138 (260)
49 PRK12693 flgG flagellar basal 30.7 64 0.0014 26.4 3.5 37 41-78 102-138 (261)
50 PRK12818 flgG flagellar basal 30.7 60 0.0013 26.6 3.3 38 40-78 101-138 (256)
51 smart00800 uDENN Domain always 30.5 60 0.0013 21.8 2.8 35 18-53 47-82 (89)
52 PF11141 DUF2914: Protein of u 30.2 75 0.0016 20.5 3.1 18 63-80 45-62 (66)
53 PF10830 DUF2553: Protein of u 28.7 1.5E+02 0.0033 19.9 4.4 32 138-169 9-40 (76)
54 PF04170 NlpE: NlpE N-terminal 28.7 1.9E+02 0.004 19.5 6.5 11 21-31 10-20 (87)
55 PRK10523 lipoprotein involved 28.5 1.2E+02 0.0027 24.7 4.7 36 35-76 91-127 (234)
56 COG2849 Uncharacterized protei 28.5 1.9E+02 0.0042 23.2 5.9 58 39-96 158-215 (230)
57 PRK00122 rimM 16S rRNA-process 27.7 1.7E+02 0.0037 22.2 5.2 27 67-93 109-136 (172)
58 TIGR02527 dot_icm_IcmQ Dot/Icm 27.7 31 0.00068 26.9 1.0 61 17-86 95-156 (182)
59 PF15072 DUF4539: Domain of un 27.6 57 0.0012 22.3 2.3 23 63-85 20-42 (86)
60 PRK12634 flgD flagellar basal 26.4 1E+02 0.0022 24.8 3.9 17 65-81 125-141 (221)
61 TIGR02743 TraW type-F conjugat 25.9 90 0.002 24.9 3.4 48 22-73 80-132 (202)
62 PRK10893 lipopolysaccharide ex 24.6 2.1E+02 0.0045 22.4 5.2 52 24-82 39-100 (192)
63 TIGR02273 16S_RimM 16S rRNA pr 24.1 1.6E+02 0.0035 22.1 4.5 29 66-94 103-132 (165)
64 PF06788 UPF0257: Uncharacteri 23.4 1.7E+02 0.0037 24.0 4.6 37 43-79 52-90 (236)
65 PRK13828 rimM 16S rRNA-process 23.3 2.1E+02 0.0045 21.6 4.9 27 67-93 89-116 (161)
66 PF05171 HemS: Haemin-degradin 22.8 1.9E+02 0.0042 20.8 4.5 71 9-82 34-114 (129)
67 TIGR00156 conserved hypothetic 22.3 1.7E+02 0.0037 21.5 4.1 22 63-84 72-93 (126)
68 PRK12819 flgG flagellar basal 21.8 1.3E+02 0.0029 24.5 3.8 38 40-78 99-136 (257)
69 PF07661 MORN_2: MORN repeat v 21.7 1.1E+02 0.0024 14.4 2.9 16 40-55 3-18 (22)
70 COG1021 EntE Peptide arylation 21.6 51 0.0011 29.6 1.3 40 41-80 345-384 (542)
71 PF01376 Enterotoxin_b: Heat-l 21.6 1.5E+02 0.0033 20.3 3.4 23 153-176 33-55 (102)
72 PRK14591 rimM 16S rRNA-process 21.1 2.3E+02 0.0049 21.6 4.8 15 67-81 109-123 (169)
73 PRK12692 flgG flagellar basal 21.1 92 0.002 25.6 2.7 38 39-77 100-137 (262)
74 COG4564 Signal transduction hi 21.0 46 0.00099 29.1 0.9 40 38-77 93-132 (459)
75 PRK02939 lipoprotein; Reviewed 20.4 2.3E+02 0.005 23.2 4.8 33 43-75 52-86 (236)
76 PRK13239 alkylmercury lyase; P 20.4 1.3E+02 0.0028 24.1 3.3 33 43-79 63-95 (206)
77 COG4786 FlgG Flagellar basal b 20.2 98 0.0021 25.8 2.7 39 39-78 100-138 (265)
78 PRK13738 conjugal transfer pil 20.1 1.4E+02 0.0031 23.9 3.5 49 22-74 78-131 (209)
No 1
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=100.00 E-value=1.2e-37 Score=244.53 Aligned_cols=161 Identities=32% Similarity=0.626 Sum_probs=97.4
Q ss_pred eEEcccccCCcceEEEEEEEeeeecCCceEEEcCCCCEEEEEEc-cCCCCCCeEEEECCCCCeEEEEEecccccccEEEE
Q 030505 14 NIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDG-SLWKFQKKRVMRDPAGIPLLTMRQKSFKWRKEWTV 92 (176)
Q Consensus 14 ~vv~~~~~~~~~~~l~vkqk~~s~~~~~f~V~D~~G~~v~~V~g-~~~s~~~~~~l~D~~G~~L~~I~~k~~s~~~~~~i 92 (176)
+||+++||++++++|+||+|.+++++++|+|+|++|+++|+|+| +.+++++++.|+|++|+||++|++|.++++++|++
T Consensus 2 ~vv~~~~~~~~~~~l~v~~k~~~~~~~~f~V~D~~G~~vf~V~g~~~~s~~~~~~l~D~~G~~L~~i~~k~~~l~~~w~i 81 (187)
T PF04525_consen 2 VVVDAQYCSPQPVTLTVKKKSLSFSGDDFTVYDENGNVVFRVDGGKFFSIGKKRTLMDASGNPLFTIRRKLFSLRPTWEI 81 (187)
T ss_dssp -SS-GGGB-SS-EEEEEE----------EEEEETTS-EEEEEE--SCTTBTTEEEEE-TTS-EEEEEE--------EEEE
T ss_pred cEECHHHcCCCceEEEEEEEEeeecCCCEEEEcCCCCEEEEEEEecccCCCCEEEEECCCCCEEEEEEeeecccceEEEE
Confidence 57899999999999999999988877799999999999999999 89999999999999999999999999999999999
Q ss_pred EeCCCCCCCCCeEEEEEcCCCcccccEEEEEccCCcc---CCCCCCcEEEEeeeCCCceEEE-ECCEEEEEEE-------
Q 030505 93 HPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNI---IGKRAPDFYVTGSFTSLSFKVY-RGKTVLCQVV------- 161 (176)
Q Consensus 93 ~~~~~~~~~~~~l~tv~~~~~~~~k~~~~v~~~~~~~---~~~~~~~~~i~G~~~~~~f~I~-~~~~~VA~i~------- 161 (176)
|++++.+. .+++|+||+++....+.++.+|++.... ..+.+++|+|+|||++++|+|+ .+|++||+|+
T Consensus 82 ~~~~~~~~-~~~i~tvkk~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~G~~~~~~~~I~~~~g~~VA~i~rk~~~k~ 160 (187)
T PF04525_consen 82 YRGGGSEG-KKPIFTVKKKSMLQNKDSFDVFLPPKSNISIDDSEGPDFEIKGNFWDRSFTIYDSGGRVVAEISRKYSSKK 160 (187)
T ss_dssp EETT---G-GGEEEEEE----------EEEEET--T----------SEEEES-TTTT--EEEECC--EEEEEEE------
T ss_pred EECCCCcc-CceEEEEEEecccCCCcceeEEEecccceeecCCCCceEEEEEEecCcEEEEEEcCCCEEEEEecccceee
Confidence 99998544 5689999998777788888888774321 1234479999999999999999 5599999997
Q ss_pred -ecccceEEEeecCC
Q 030505 162 -VPWAVAFTTSNSPG 175 (176)
Q Consensus 162 -~~~~dty~~~~~~~ 175 (176)
+.|+|+|.+.+.||
T Consensus 161 ~~~~~dty~l~V~pg 175 (187)
T PF04525_consen 161 WFSGRDTYTLTVAPG 175 (187)
T ss_dssp ----B-SEEEEE-TT
T ss_pred EEecCcEEEEEEcCC
Confidence 99999999999998
No 2
>COG4894 Uncharacterized conserved protein [Function unknown]
Probab=99.97 E-value=6.2e-32 Score=199.98 Aligned_cols=134 Identities=17% Similarity=0.399 Sum_probs=119.6
Q ss_pred ceEEEEEEEeeeecCCceEEEcCCCCEEEEEEccCCCCCCeEEEECCCCCeEEEEEecccccccEEEEEeCCCCCCCCCe
Q 030505 25 TMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLTMRQKSFKWRKEWTVHPGESSEDNNDI 104 (176)
Q Consensus 25 ~~~l~vkqk~~s~~~~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~~I~~k~~s~~~~~~i~~~~~~~~~~~~ 104 (176)
|.+|.|+||++++++ +|.|+|.+|+.+|+|+|+.|++++.++|.|++|.+|.+|++|+++++|+|+|.++++ .
T Consensus 5 ~~tl~mkQk~~~~gd-~f~I~d~dgE~af~VeGs~f~i~dtlti~Da~G~~l~~i~~kll~l~~~yeI~d~~g------~ 77 (159)
T COG4894 5 MITLFMKQKMFSFGD-AFHIYDRDGEEAFKVEGSFFSIGDTLTITDASGKTLVSIEQKLLSLLPRYEISDGGG------T 77 (159)
T ss_pred hHhHhhhhhhhhccc-ceEEECCCCcEEEEEeeeEEeeCceEEEEecCCCChHHHHHHHhhccceeEEEcCCC------C
Confidence 678999999999999 999999999999999999999999999999999999999999999999999999997 3
Q ss_pred EEEEEcCCCcccccEEEEEccCCccCCCCCCcEEEEeeeCCCceEEEECCEEEEEEE---ecccceEEEeecCCC
Q 030505 105 LFRVEQPSPLHIKTKLEVFLPNNNIIGKRAPDFYVTGSFTSLSFKVYRGKTVLCQVV---VPWAVAFTTSNSPGS 176 (176)
Q Consensus 105 l~tv~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~i~G~~~~~~f~I~~~~~~VA~i~---~~~~dty~~~~~~~~ 176 (176)
++.++| +++++.++..+ +.++|+++||+|+.+|++++|+.++|+|+ ++|+|||+|.++|+.
T Consensus 78 ~~~vrK--------K~tf~Rdk~e~---d~~~~eihGNi~d~efkl~dg~~~~aeVsKkwf~~rdTY~l~vapde 141 (159)
T COG4894 78 VCEVRK--------KVTFSRDKFEI---DGLNWEIHGNIWDDEFKLTDGENVRAEVSKKWFSWRDTYHLQVAPDE 141 (159)
T ss_pred EEEEEE--------EEEEEeeeEEE---cCCCeEEecceeceEEEEecCCceehhheeeeEeccceEEEEEcCch
Confidence 666665 34444444433 33689999999999999999999999999 999999999999973
No 3
>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site. Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].
Probab=99.25 E-value=8.2e-10 Score=88.49 Aligned_cols=138 Identities=18% Similarity=0.261 Sum_probs=104.1
Q ss_pred ceEEEEEEEeeee-------cCCceEEEcCCCCEEEEEEccCC---------CCCCeEEEECCCCCeEEEEEeccccc--
Q 030505 25 TMEMLVKKRIQGM-------SNAHYDVFDISGNLLLQVDGSLW---------KFQKKRVMRDPAGIPLLTMRQKSFKW-- 86 (176)
Q Consensus 25 ~~~l~vkqk~~s~-------~~~~f~V~D~~G~~v~~V~g~~~---------s~~~~~~l~D~~G~~L~~I~~k~~s~-- 86 (176)
.-.++|+|+.-.+ ..+.|.|+|.+|+.+|.+...-- ...-+++|+|..|+++++|+|..--.
T Consensus 21 ~~~l~I~Q~~e~~e~~~~~e~~N~Y~I~n~~g~~i~~~~E~s~~~~R~~~~~~R~f~~~i~D~~g~~vl~i~Rp~~c~~C 100 (221)
T PF03803_consen 21 LDQLLIKQQIEPLEIFTGFETPNRYDIKNPNGQQIYYAVEESDCCSRQCCGSHRPFKMHIYDNYGREVLTIERPFKCCSC 100 (221)
T ss_pred CCEEEEEEEEEEeceecccccCceEEEECCCCCEEEEEEEeCcceeeeecCCCCCEEEEEEecCCCEEEEEEcCCcceec
Confidence 4577888876432 35699999999999999976621 12336799999999999999985422
Q ss_pred ----ccEEEEEeCCCCCCCCCeEEEEEcCCCcccccEEEEEccCCccCCCCCCcEEEEee------eCCCceEEEEC-CE
Q 030505 87 ----RKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRAPDFYVTGS------FTSLSFKVYRG-KT 155 (176)
Q Consensus 87 ----~~~~~i~~~~~~~~~~~~l~tv~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~i~G~------~~~~~f~I~~~-~~ 155 (176)
..+.+|+.+. ++++++|++ .+...+.+++|+.+++. .-+.|+|. +.+++|.|++. |+
T Consensus 101 ~~~~~~~~~V~~p~-----g~~iG~I~q-~~~~~~~~f~I~d~~~~------~~~~I~gp~~~~~~~~~~~F~I~~~~~~ 168 (221)
T PF03803_consen 101 CPCCLQEMEVESPP-----GNLIGSIRQ-PFSCCRPNFDIFDANGN------PIFTIKGPCCCCSCCCDWEFEIKDPNGQ 168 (221)
T ss_pred ccccceeEEEecCC-----CcEEEEEEE-cCcccceEEEEEECCCc------eEEEEeCCcceeccccceeeeeecccCc
Confidence 3567776666 589999998 46667889999977753 35777776 56789999995 99
Q ss_pred EEEEEEecc----------cceEEEeecC
Q 030505 156 VLCQVVVPW----------AVAFTTSNSP 174 (176)
Q Consensus 156 ~VA~i~~~~----------~dty~~~~~~ 174 (176)
.||+|+..| +|.|.++..|
T Consensus 169 ~vg~I~k~w~G~~~e~~t~~d~f~i~Fp~ 197 (221)
T PF03803_consen 169 EVGSITKKWSGFCRELFTDADNFVIEFPP 197 (221)
T ss_pred EEEEEEEecCCcchhhccccceEEEEcCC
Confidence 999999333 5788888755
No 4
>COG4894 Uncharacterized conserved protein [Function unknown]
Probab=98.79 E-value=1.9e-08 Score=75.16 Aligned_cols=74 Identities=15% Similarity=0.211 Sum_probs=66.9
Q ss_pred ccCCcceEEEEEEEeeeecCCceEEEcCCCCEEEEEEccCCCCCCeEEEECCCCCeEEEEEecccccccEEEEEeC
Q 030505 20 FCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLTMRQKSFKWRKEWTVHPG 95 (176)
Q Consensus 20 ~~~~~~~~l~vkqk~~s~~~~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~~I~~k~~s~~~~~~i~~~ 95 (176)
|-......++|+.+.+++.+ .|+|+|+.|..++.++.+++++.+++.|.|.+|+ ++.+++|...++++|++...
T Consensus 24 ~d~dgE~af~VeGs~f~i~d-tlti~Da~G~~l~~i~~kll~l~~~yeI~d~~g~-~~~vrKK~tf~Rdk~e~d~~ 97 (159)
T COG4894 24 YDRDGEEAFKVEGSFFSIGD-TLTITDASGKTLVSIEQKLLSLLPRYEISDGGGT-VCEVRKKVTFSRDKFEIDGL 97 (159)
T ss_pred ECCCCcEEEEEeeeEEeeCc-eEEEEecCCCChHHHHHHHhhccceeEEEcCCCC-EEEEEEEEEEEeeeEEEcCC
Confidence 44556789999999999999 8999999999999999999999999999999999 88888888777999988653
No 5
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=98.40 E-value=2.5e-06 Score=66.79 Aligned_cols=73 Identities=16% Similarity=0.299 Sum_probs=44.4
Q ss_pred CCcceEEEEEE-EeeeecCCceEEEcCCCCEEEEEEccCCCCCCeEEEECCCCC----eEEEEEec-ccccccEEEEEeC
Q 030505 22 VPYTMEMLVKK-RIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGI----PLLTMRQK-SFKWRKEWTVHPG 95 (176)
Q Consensus 22 ~~~~~~l~vkq-k~~s~~~~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~----~L~~I~~k-~~s~~~~~~i~~~ 95 (176)
.+....|+++. +.++++. ...|+|++|+++++++.+.++++++..++++++. ++++|+++ .+..++...+|.+
T Consensus 35 ~~G~~vf~V~g~~~~s~~~-~~~l~D~~G~~L~~i~~k~~~l~~~w~i~~~~~~~~~~~i~tvkk~~~~~~~~~~~~f~~ 113 (187)
T PF04525_consen 35 ENGNVVFRVDGGKFFSIGK-KRTLMDASGNPLFTIRRKLFSLRPTWEIYRGGGSEGKKPIFTVKKKSMLQNKDSFDVFLP 113 (187)
T ss_dssp TTS-EEEEEE--SCTTBTT-EEEEE-TTS-EEEEEE--------EEEEEETT---GGGEEEEEE----------EEEEET
T ss_pred CCCCEEEEEEEecccCCCC-EEEEECCCCCEEEEEEeeecccceEEEEEECCCCccCceEEEEEEecccCCCcceeEEEe
Confidence 45678999999 8899999 9999999999999999999999999999999998 49999999 3344555566654
No 6
>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site. Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].
Probab=97.10 E-value=0.005 Score=49.14 Aligned_cols=65 Identities=15% Similarity=0.311 Sum_probs=53.9
Q ss_pred eEEEcCCCCEEEEEEccCCC------CCCeEEEECCCCCeEEEEEecccccccEEEEEeCCCCCCCCCeEEEEEcC
Q 030505 42 YDVFDISGNLLLQVDGSLWK------FQKKRVMRDPAGIPLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQP 111 (176)
Q Consensus 42 f~V~D~~G~~v~~V~g~~~s------~~~~~~l~D~~G~~L~~I~~k~~s~~~~~~i~~~~~~~~~~~~l~tv~~~ 111 (176)
..|+|..|+.|++++...-= ...+..|.++.|++|++|+++...+.++|+|+++++ +++++|+.+
T Consensus 78 ~~i~D~~g~~vl~i~Rp~~c~~C~~~~~~~~~V~~p~g~~iG~I~q~~~~~~~~f~I~d~~~-----~~~~~I~gp 148 (221)
T PF03803_consen 78 MHIYDNYGREVLTIERPFKCCSCCPCCLQEMEVESPPGNLIGSIRQPFSCCRPNFDIFDANG-----NPIFTIKGP 148 (221)
T ss_pred EEEEecCCCEEEEEEcCCcceecccccceeEEEecCCCcEEEEEEEcCcccceEEEEEECCC-----ceEEEEeCC
Confidence 36799999999999987321 236788889999999999998767899999999984 688999875
No 7
>KOG0621 consensus Phospholipid scramblase [Cell wall/membrane/envelope biogenesis]
Probab=95.20 E-value=1.1 Score=37.72 Aligned_cols=122 Identities=16% Similarity=0.113 Sum_probs=77.8
Q ss_pred cCCceEEEcCCCCEEEEEEccC---------CCCCCeEEEECCCCCeEEEEEecccccc--------cEEEEEeCCCCCC
Q 030505 38 SNAHYDVFDISGNLLLQVDGSL---------WKFQKKRVMRDPAGIPLLTMRQKSFKWR--------KEWTVHPGESSED 100 (176)
Q Consensus 38 ~~~~f~V~D~~G~~v~~V~g~~---------~s~~~~~~l~D~~G~~L~~I~~k~~s~~--------~~~~i~~~~~~~~ 100 (176)
+.+.|.|.|.+|+.+|.+-..- -...-..+|+|.-|+++++++|...-.. ...++..+.
T Consensus 97 t~NRY~v~~~~g~~v~~~~E~S~~~~Rq~~g~~RpF~~~i~D~~g~eVl~~~R~~~c~~~~c~~~~~~~~~v~~p~---- 172 (292)
T KOG0621|consen 97 TANRYVVHDMYGQPLYYAMERSNVFARQYLGTHRPFAMRIMDNFGQEVLTCKRPFPCCSSACALCLAQEIEIQSPP---- 172 (292)
T ss_pred cCcEEEEEcCCcChhHHHHhhchHHHHHhhccCCcceeEeecccCcEEEEEeccccccccccccccccEEEEEcCC----
Confidence 5669999999999999665542 1224478999999999999999864322 334555544
Q ss_pred CCCeEEEEEcCCCcccccEEEEEccCCccCCCCCCcEEEEee-------eCCCceEEEE-C-CEEEEEEE----------
Q 030505 101 NNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRAPDFYVTGS-------FTSLSFKVYR-G-KTVLCQVV---------- 161 (176)
Q Consensus 101 ~~~~l~tv~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~i~G~-------~~~~~f~I~~-~-~~~VA~i~---------- 161 (176)
.-++.+|.+ .+.....+++|...+.. ..+.|+|- +-+..|.|.. + ++.|++|+
T Consensus 173 -~~~lG~v~q-~~~~~~~~f~i~~~~~~------~v~~v~gp~~~~~~~~~d~~f~~~~~d~~~~vg~I~k~w~g~~rE~ 244 (292)
T KOG0621|consen 173 -MGLLGKVLQ-TWGCVNPNFHLWDRDGN------LVFLVEGPRCCTFACCDDTVFFPKTTDNGRIVGSISRKWAGLVREA 244 (292)
T ss_pred -CceEEEEEE-eeccccceEEEEcccce------eEEEEEcCceeEEEeecCcceeEEEcCCCeEEEEEeecccchhhhh
Confidence 347777766 34334556666543221 22344443 3334444444 3 89999999
Q ss_pred ecccceEEEe
Q 030505 162 VPWAVAFTTS 171 (176)
Q Consensus 162 ~~~~dty~~~ 171 (176)
++-.|+|.|.
T Consensus 245 fTDad~f~v~ 254 (292)
T KOG0621|consen 245 FTDADTFVVH 254 (292)
T ss_pred eeccceeeEe
Confidence 5666777775
No 8
>PF09008 Head_binding: Head binding; InterPro: IPR009093 This entry represents the N-terminal domain of the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The tailspike protein of Salmonella bacteriophage P22 is a viral adhesion protein that mediates attachment of the viral protein to host cell-surface lipopolysaccharide. The tailspike protein displays both receptor binding and destroying properties, inactivating the receptor by endoglycosidase activity. The N-terminal, head-binding domain mediates the non-covalent attachment of the six homotrimeric tailspike molecules to the DNA injection apparatus []. The N-terminal domain of the P22 tailspike protein shows significant sequence similarity to the N-terminal domain of the Shigella phage Sf6 tailspike protein [].; GO: 0009405 pathogenesis; PDB: 2XC1_C 1LKT_D 2VFQ_A 2VFO_A 2VFN_A 2VFP_A 2VKY_B 2VFM_A 2VNL_A 2VBK_A ....
Probab=72.21 E-value=11 Score=27.07 Aligned_cols=68 Identities=12% Similarity=0.084 Sum_probs=35.6
Q ss_pred CCCCCCCC--eeeEEcccccCCcceEEEEEEEeeeecCCceEEEcCCCCEEEEEEccCCCCCCeEEEECCCCCeEEEEEe
Q 030505 4 SGWDYGVP--IINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLTMRQ 81 (176)
Q Consensus 4 ~~~~~~~~--~~~vv~~~~~~~~~~~l~vkqk~~s~~~~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~~I~~ 81 (176)
.|-|++.| +++| |..++.-.+..-.+-+.+..++|.+++.+ .+..|... +..+.|+|++|..++.+-.
T Consensus 36 ~~tDP~~p~NqI~V----yl~ne~G~~~~i~QPi~iN~gg~~~y~gq--~a~~vt~~----~hSMAv~d~~g~q~Fy~pn 105 (114)
T PF09008_consen 36 AGTDPTNPGNQIPV----YLENEDGSHVQIAQPIIINKGGFPVYNGQ--IAKFVTVP----GHSMAVYDANGQQQFYFPN 105 (114)
T ss_dssp TTS-TTSGGGB--E----EEE-TTS-EEEE-SSEEE-TTS-EEETTE--E--EEESS----SEEEEEE-TTS-EEEEESE
T ss_pred CCCCCCCCCCcceE----EEEcCCCCEeeccCCEEEccCCceEEccc--eeEEEEcc----CceEEEEeCCCcEEEeecc
Confidence 45567777 5665 33444333333334567766699999866 55555444 2367899999999988743
No 9
>KOG0621 consensus Phospholipid scramblase [Cell wall/membrane/envelope biogenesis]
Probab=66.81 E-value=26 Score=29.60 Aligned_cols=42 Identities=19% Similarity=0.258 Sum_probs=22.0
Q ss_pred ceEEEcCCCCEEEEEEccC------CCCCCeEEEECCCCCeEEEEEec
Q 030505 41 HYDVFDISGNLLLQVDGSL------WKFQKKRVMRDPAGIPLLTMRQK 82 (176)
Q Consensus 41 ~f~V~D~~G~~v~~V~g~~------~s~~~~~~l~D~~G~~L~~I~~k 82 (176)
.|.|.|..++.+|.|+|-. ++......++..+|..+++|-++
T Consensus 189 ~f~i~~~~~~~v~~v~gp~~~~~~~~~d~~f~~~~~d~~~~vg~I~k~ 236 (292)
T KOG0621|consen 189 NFHLWDRDGNLVFLVEGPRCCTFACCDDTVFFPKTTDNGRIVGSISRK 236 (292)
T ss_pred eEEEEcccceeEEEEEcCceeEEEeecCcceeEEEcCCCeEEEEEeec
Confidence 5666666666666666651 11222344444555556666555
No 10
>PF02974 Inh: Protease inhibitor Inh; InterPro: IPR021140 This entry represents the metalloprotease inhibitor I38, as well as the outer membrane lipoprotein Omp19. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family of proteins represent monomeric serralysin inhibitors of about 125 residues, which interact with specific metalloprotease which are synthesised by serralysin secretors and characterised by being plant, insect and animal pathogens. It is probable that the serralysin inhibitors protect the host from proteolysis during export of the protease. The members of this family belong to MEROPS proteinase inhibitor family I38, clan IK. X-ray crystallography of a complex between the Serratia marcescens protease, SmaPI, and the inhibitor of Erwinia chrysanthemi, Inh, reveals that Inh is folded into an eight-stranded b-barrel with an N-terminal trunk of 10 residues. Residues 1-5 occupy part of the extended active site of the proteinase, thereby preventing access of the substrate. Residues 6-10 form a linker that connects the N-terminal proteinase-binding peptide to the body of the b-barrel. The backbone carbonyl of Ser-1 interacts with the catalytic zinc; the Ser-2 side chain occupies the S1'-binding site and also forms a hydrogen bond to the carboxyl end of the catalytic Glu, whereas Leu-3 occupies the S2' recognition site. Penetration of the trunk region further than 5 residues into the substrate binding cleft appears to be prevented by the b-barrel, which itself interacts with the proteinase near its Met turn (19). Peptide mimetics of the trunk at concentrations up to about 100 mM do not inhibit the protease, demonstrating that the barrel is essential for inhibitory activity [, ]. Structurally and functionally these inhibitors are closely related to the lipocalins, fatty acid-binding proteins, avidins and the enigmatic triabin. Together these five protein families constitute the calycin superfamily []. The proteins are characterised by their high specificity for small hydrophobic molecules and by their ability to form complexes with soluble macromolecules either through intramolecular disulphides or protein-protein interactions []. ; PDB: 1JIW_I 2RN4_A 1SMP_I.
Probab=63.77 E-value=42 Score=23.33 Aligned_cols=32 Identities=9% Similarity=0.128 Sum_probs=24.8
Q ss_pred CCeEEEECCCCCeEEEEEecccccccEEEEEeCCC
Q 030505 63 QKKRVMRDPAGIPLLTMRQKSFKWRKEWTVHPGES 97 (176)
Q Consensus 63 ~~~~~l~D~~G~~L~~I~~k~~s~~~~~~i~~~~~ 97 (176)
++.+.|+|.+|+.|+.+.+.. -..|+...+++
T Consensus 61 gd~l~L~d~~G~~v~~f~~~~---~g~~~g~~~~g 92 (99)
T PF02974_consen 61 GDGLVLTDADGSVVAFFYRSG---DGRFEGQTPDG 92 (99)
T ss_dssp TTEEEEE-TTS-EEEEEEEEC---TTEEEEEECCC
T ss_pred CCEEEEECCCCCEEEEEEccC---CeeEEeEcCCC
Confidence 578999999999999998874 35788888775
No 11
>PF06903 VirK: VirK protein; InterPro: IPR010694 This family consists of several bacterial VirK proteins of around 145 residues in length. The function of this family is unknown [].
Probab=62.69 E-value=24 Score=25.02 Aligned_cols=19 Identities=21% Similarity=0.427 Sum_probs=15.1
Q ss_pred CCCCCCeeeEEcccccCCc
Q 030505 6 WDYGVPIINIVGENFCVPY 24 (176)
Q Consensus 6 ~~~~~~~~~vv~~~~~~~~ 24 (176)
+..|-++..+|+...|.++
T Consensus 13 L~~Gk~V~v~iDls~Ct~~ 31 (100)
T PF06903_consen 13 LDAGKNVTVVIDLSQCTPE 31 (100)
T ss_pred HHcCCeEEEEEEHHHCccC
Confidence 3456778888899999887
No 12
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=61.13 E-value=47 Score=25.23 Aligned_cols=63 Identities=16% Similarity=0.179 Sum_probs=38.8
Q ss_pred ecCCceEEEcCCCCEEEEEEccCCC----CCCeEE----EECCCCCeEEEEEeccc---ccccEEEEEeCCCCC
Q 030505 37 MSNAHYDVFDISGNLLLQVDGSLWK----FQKKRV----MRDPAGIPLLTMRQKSF---KWRKEWTVHPGESSE 99 (176)
Q Consensus 37 ~~~~~f~V~D~~G~~v~~V~g~~~s----~~~~~~----l~D~~G~~L~~I~~k~~---s~~~~~~i~~~~~~~ 99 (176)
|.++-|.|+|++|+++..+...... ++.-++ +.|.+|.--+-++|+.. ++...|+..-+|+-+
T Consensus 2 ~~~E~~~v~d~~~~~~~~~~r~~~~~~g~~h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~ 75 (180)
T cd03676 2 WRNELYAVYGPFGEPLFEIERAASRLFGLVTYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLG 75 (180)
T ss_pred CcCcceeeECCCCCEeEEEEecccccCCceEEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCC
Confidence 5566899999999999887665322 234445 33665233444444433 356778888766533
No 13
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=58.16 E-value=17 Score=24.16 Aligned_cols=17 Identities=18% Similarity=0.184 Sum_probs=10.0
Q ss_pred eEEEECCCCCeEEEEEe
Q 030505 65 KRVMRDPAGIPLLTMRQ 81 (176)
Q Consensus 65 ~~~l~D~~G~~L~~I~~ 81 (176)
++.|+|++|+.|.++.-
T Consensus 28 ~v~I~d~~G~~V~t~~~ 44 (81)
T PF13860_consen 28 TVTIYDSNGQVVRTISL 44 (81)
T ss_dssp EEEEEETTS-EEEEEEE
T ss_pred EEEEEcCCCCEEEEEEc
Confidence 56666666666666543
No 14
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=51.57 E-value=50 Score=25.34 Aligned_cols=56 Identities=16% Similarity=0.144 Sum_probs=35.2
Q ss_pred ceEEEcCCCCEEEEEEc------cCCCCCCeEEEECCCCCeEEEEEeccc--ccccEEEEEeCCC
Q 030505 41 HYDVFDISGNLLLQVDG------SLWKFQKKRVMRDPAGIPLLTMRQKSF--KWRKEWTVHPGES 97 (176)
Q Consensus 41 ~f~V~D~~G~~v~~V~g------~~~s~~~~~~l~D~~G~~L~~I~~k~~--s~~~~~~i~~~~~ 97 (176)
-+.|+|++|+++-.+.. ++....-.+.|+|.+|+.|+ .+|... .+...|+..-+|.
T Consensus 11 ~~~~~d~~~~~~g~~~~~~~~~~~~~h~~~~v~v~~~~g~iLL-~~R~~~~~~~pg~~~~~pGG~ 74 (180)
T PRK15393 11 WVDIVNENNEVIAQASREQMRAQCLRHRATYIVVHDGMGKILV-QRRTETKDFLPGMLDATAGGV 74 (180)
T ss_pred EEEEECCCCCEeeEEEHHHHhhCCCceEEEEEEEECCCCeEEE-EEeCCCCCCCCCcccccCCCc
Confidence 58999999999998732 12233346677898888776 344322 2344566665554
No 15
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=50.63 E-value=47 Score=24.82 Aligned_cols=56 Identities=20% Similarity=0.184 Sum_probs=37.4
Q ss_pred eEEEcCCCCEEEEEEccCCCCC-------CeEEEECCCCCeEEEEEecc-cccccEEEEEeCCC
Q 030505 42 YDVFDISGNLLLQVDGSLWKFQ-------KKRVMRDPAGIPLLTMRQKS-FKWRKEWTVHPGES 97 (176)
Q Consensus 42 f~V~D~~G~~v~~V~g~~~s~~-------~~~~l~D~~G~~L~~I~~k~-~s~~~~~~i~~~~~ 97 (176)
+.|+|++|+.+-++..+-...+ -...|+|.+|+.|+.-|... ..+...|++.-+|.
T Consensus 1 ~~~~d~~~~~~g~~~r~~~~~~~g~~h~~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~~gG~ 64 (158)
T TIGR02150 1 VILVDENDNPIGTASKAEVHLQETPLHRAFSVFLFNEEGQLLLQRRALSKITWPGVWTNSCCSH 64 (158)
T ss_pred CEEECCCCCEeeeeeHHHhhhcCCCeEEEEEEEEEcCCCeEEEEeccCCCcCCCCCccccccCC
Confidence 3689999999999887754422 24578898998777533222 24567898754443
No 16
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=50.41 E-value=18 Score=29.86 Aligned_cols=47 Identities=17% Similarity=0.296 Sum_probs=28.4
Q ss_pred EEEEEEEeeeecCCceEEEcCCCCEEEEEEccCCCC-CCeEEEECCCC
Q 030505 27 EMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKF-QKKRVMRDPAG 73 (176)
Q Consensus 27 ~l~vkqk~~s~~~~~f~V~D~~G~~v~~V~g~~~s~-~~~~~l~D~~G 73 (176)
.|.+-.+.....+..|.|.|.+|+++|.++..-..+ .+++.|.-+.|
T Consensus 126 ~l~lgp~~ve~~~~~Fev~~~dgk~LFsad~dEv~vgae~LRv~g~~G 173 (292)
T KOG3950|consen 126 QLILGPKKVEAQCKRFEVNDVDGKLLFSADEDEVVVGAEKLRVLGAEG 173 (292)
T ss_pred eEEechHHHhhhhceeEEecCCCcEEEEeccceeEeeeeeeEeccCCc
Confidence 344434444444448888888888888888874433 34555444444
No 17
>PF01947 DUF98: Protein of unknown function (DUF98); InterPro: IPR002800 This entry represents a group of proteins with no known function.; PDB: 2NWI_A.
Probab=49.87 E-value=17 Score=27.32 Aligned_cols=26 Identities=19% Similarity=0.356 Sum_probs=21.8
Q ss_pred EEeeeCCCceEEEECCEEEEEEE--ecc
Q 030505 139 VTGSFTSLSFKVYRGKTVLCQVV--VPW 164 (176)
Q Consensus 139 i~G~~~~~~f~I~~~~~~VA~i~--~~~ 164 (176)
..|.+|.+.|.|+++|+.++-|. |+.
T Consensus 116 ~~~~~~~R~Y~i~~~~~pl~~I~E~F~~ 143 (149)
T PF01947_consen 116 CEGPFWSRTYRIIHNGKPLMVITEVFPP 143 (149)
T ss_dssp SS-EEEEEEEEEEETTEEEEEEEEEEEG
T ss_pred CCCCcCccEEEEEECCEEEEEEEEECCc
Confidence 36789999999999999999998 554
No 18
>PF12396 DUF3659: Protein of unknown function (DUF3659) ; InterPro: IPR022124 This domain family is found in bacteria and eukaryotes, and is approximately 70 amino acids in length.
Probab=47.53 E-value=73 Score=20.59 Aligned_cols=41 Identities=20% Similarity=0.124 Sum_probs=28.0
Q ss_pred ceEEEcCCCCEEEEEEcc-CC-----CCCCeEEEECCCCCeEEEEEe
Q 030505 41 HYDVFDISGNLLLQVDGS-LW-----KFQKKRVMRDPAGIPLLTMRQ 81 (176)
Q Consensus 41 ~f~V~D~~G~~v~~V~g~-~~-----s~~~~~~l~D~~G~~L~~I~~ 81 (176)
.=.|.|.+|+++-+|... .- ..-.+=.|.|.+|+.|.+...
T Consensus 12 ~G~V~d~~G~~vG~vveGd~k~L~G~~vd~~G~I~d~~G~viGkae~ 58 (64)
T PF12396_consen 12 DGNVVDDDGNVVGRVVEGDPKKLVGKKVDEDGDILDKDGNVIGKAEP 58 (64)
T ss_pred CCeEECCCCCEEEEEecCCHHHhcCCcCCCCCCEECCCCCEEEEEEe
Confidence 347899999999995543 21 223344678888888877653
No 19
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=47.45 E-value=43 Score=27.84 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=11.2
Q ss_pred cCCceEEEcC-CCCEEEEEEcc
Q 030505 38 SNAHYDVFDI-SGNLLLQVDGS 58 (176)
Q Consensus 38 ~~~~f~V~D~-~G~~v~~V~g~ 58 (176)
..+.|.|+|. +|+.+|.++..
T Consensus 116 ~~~~F~V~d~~~g~~lFsad~~ 137 (264)
T PF04790_consen 116 QSNRFEVKDPRDGKTLFSADRP 137 (264)
T ss_pred ecCeEEEEcCCCCceEEEecCC
Confidence 3335555555 55555555554
No 20
>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function. This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.
Probab=47.19 E-value=72 Score=26.08 Aligned_cols=74 Identities=8% Similarity=0.210 Sum_probs=38.0
Q ss_pred EEEEEecc--c--ccccEEEEEeCCCCCCCCCeEEEEEcCCCcccccEEEEEccCCccCCCCCCcE--EEEeeeCCCceE
Q 030505 76 LLTMRQKS--F--KWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRAPDF--YVTGSFTSLSFK 149 (176)
Q Consensus 76 L~~I~~k~--~--s~~~~~~i~~~~~~~~~~~~l~tv~~~~~~~~k~~~~v~~~~~~~~~~~~~~~--~i~G~~~~~~f~ 149 (176)
-+.|+|.. + .+.+.|..+..+.. ++.|...||..-. ...+.-|.+..... .+...+| +|+.|+++.+|+
T Consensus 9 qC~I~R~k~g~~~~lyp~y~l~l~~~~---~kfLLaArK~~~s-~~s~YiIS~~~~dl-sr~s~~yvGKLrsNf~GT~F~ 83 (246)
T PF01167_consen 9 QCFIRRDKSGLTRGLYPGYYLYLEGEN---GKFLLAARKRKRS-KTSNYIISLDPDDL-SRSSNNYVGKLRSNFLGTEFT 83 (246)
T ss_dssp EEEEEEESTTCCCT---EEEEEEESTT---SEEEEEEEEECSS-SSEEEEEESSHHHH-CTT---ESEEEEE-TTSSEEE
T ss_pred EEEEEEECCCCCcccCcEeEeccccCC---CcEEEeeeecccC-CCcceEEecCCCcc-ccCCCceeeeeccccceeEEE
Confidence 45665542 2 25778888875321 5577777663222 23455554433221 1111122 478999999999
Q ss_pred EEECC
Q 030505 150 VYRGK 154 (176)
Q Consensus 150 I~~~~ 154 (176)
|||.|
T Consensus 84 iyD~g 88 (246)
T PF01167_consen 84 IYDNG 88 (246)
T ss_dssp EEESS
T ss_pred EECCC
Confidence 99984
No 21
>PF07680 DoxA: TQO small subunit DoxA; InterPro: IPR011636 Thiosulphate:quinone oxidoreductase (TQO) catalyses one of the early steps in elemental sulphur oxidation. A novel TQO enzyme was purified from the thermo-acidophilic archaeon Acidianus ambivalens and shown to consist of a large subunit (DoxD) and a smaller subunit (DoxA). The DoxD- and DoxA-like two subunits are fused together in a single polypeptide in Q8AAF0 from SWISSPROT.
Probab=46.09 E-value=54 Score=24.43 Aligned_cols=42 Identities=17% Similarity=0.267 Sum_probs=29.1
Q ss_pred ceEEEcCCCCEEEEEEccCCCCCCeEEEECCCCCeEEEEEeccccccc
Q 030505 41 HYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLTMRQKSFKWRK 88 (176)
Q Consensus 41 ~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~~I~~k~~s~~~ 88 (176)
.|.|++.+|-.+| .++--.+.|+|.+|+.+++-.++.++-.|
T Consensus 32 ~f~vyr~~G~D~Y------gsfl~~i~l~d~~g~vv~~~~~~~L~~lP 73 (133)
T PF07680_consen 32 SFHVYRVEGPDVY------GSFLIGIQLKDSTGHVVLNWDQEKLSSLP 73 (133)
T ss_pred EEEEEEcCCCccC------CceeeEEEEECCCCCEEEEeCHHHhhhCC
Confidence 3444554444433 46777999999999999999887665333
No 22
>PF15529 Toxin_49: Putative toxin 49
Probab=45.21 E-value=25 Score=24.42 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=16.6
Q ss_pred cCCceEEEcCCCCEEEEEEcc
Q 030505 38 SNAHYDVFDISGNLLLQVDGS 58 (176)
Q Consensus 38 ~~~~f~V~D~~G~~v~~V~g~ 58 (176)
...+|++||++|.++-++++.
T Consensus 28 ~vt~Y~tY~~~G~~~kr~r~~ 48 (89)
T PF15529_consen 28 RVTSYTTYDEDGMIVKRYRGS 48 (89)
T ss_pred cccceeEEcCCCcEeEEeecc
Confidence 445899999999977776665
No 23
>PF09475 Dot_icm_IcmQ: Dot/Icm secretion system protein (dot_icm_IcmQ); InterPro: IPR013365 Proteins in this entry are the IcmQ component of Dot/Icm secretion systems, as found in the obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the literature now seems to favor calling this the Dot/Icm system. This protein was shown to be essential for translocation ().; PDB: 3FXE_A 3FXD_C.
Probab=43.11 E-value=8 Score=30.03 Aligned_cols=62 Identities=13% Similarity=0.305 Sum_probs=0.0
Q ss_pred cccccCCcceEEEEEEEeeeecCCceEEEcCCCCEEEEEEccCCCCCCeEEEECCCCCeEEEEEeccccc
Q 030505 17 GENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLTMRQKSFKW 86 (176)
Q Consensus 17 ~~~~~~~~~~~l~vkqk~~s~~~~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~~I~~k~~s~ 86 (176)
+|.|...+.++-.+|.|-=.+.. .|.+ +|-=....++.......+|.-|+||++++.+.+.+
T Consensus 95 RPIY~nE~dvk~~IksKenk~NE-AYVa-------iyInq~dIl~~~~dk~~~Dk~GkpLltLkdrai~l 156 (179)
T PF09475_consen 95 RPIYANEEDVKAAIKSKENKLNE-AYVA-------IYINQSDILSLSPDKIPTDKLGKPLLTLKDRAINL 156 (179)
T ss_dssp ----------------------------------------------------------------------
T ss_pred CCCcCCHHHHHHHHHhhhcccce-eEEE-------EEEchHhcccCCcccccccccCCcccccchhhcch
Confidence 78887777788888877555544 4432 22223346777888899999999999999998765
No 24
>PRK12813 flgD flagellar basal body rod modification protein; Reviewed
Probab=42.43 E-value=29 Score=28.10 Aligned_cols=16 Identities=31% Similarity=0.410 Sum_probs=9.3
Q ss_pred eEEEECCCCCeEEEEE
Q 030505 65 KRVMRDPAGIPLLTMR 80 (176)
Q Consensus 65 ~~~l~D~~G~~L~~I~ 80 (176)
.+.|+|++|+.+-++.
T Consensus 127 ~v~I~D~~G~vV~t~~ 142 (223)
T PRK12813 127 ELVVRDAAGAEVARET 142 (223)
T ss_pred EEEEEcCCCCEEEEEe
Confidence 5566666666665553
No 25
>PRK12816 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=41.50 E-value=32 Score=28.39 Aligned_cols=37 Identities=22% Similarity=0.393 Sum_probs=29.4
Q ss_pred ceEEEcCCCCEEEEEEccCCCCCCeEEEECCCCCeEEE
Q 030505 41 HYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLT 78 (176)
Q Consensus 41 ~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~~ 78 (176)
=|.|.+.+|..+|+=+|. |.+...-.|.+++|.+|+.
T Consensus 102 FF~V~~~~G~~~YTR~G~-F~~d~~G~Lvt~~G~~vl~ 138 (264)
T PRK12816 102 FFKILMPDGTYAYTRDGS-FKIDANGQLVTSNGYRLLP 138 (264)
T ss_pred EEEEEcCCCCeEEeeCCC-eeECCCCCEECCCCCEecc
Confidence 467788889888987777 6666677789999999885
No 26
>PF09000 Cytotoxic: Cytotoxic; InterPro: IPR009105 Colicins are plasmid-encoded protein antibiotics, or bacteriocins, produced by strains of Escherichia coli that kill closely related bacteria. Colicins are classified according to the cell-surface receptor they bind to, colicin E3 binding to the BtuB receptor involved in vitamin B12 uptake. The lethal action of colicin E3 arises from its ability to inactivate the ribosome by site-specific RNase cleavage of the 16S ribosomal RNA, which is carried out by the catalytic, or ribonuclease domain. Colicin E3 is comprised of three domains, each domain being involved in a different stage of infection: receptor binding, translocation and cytotoxicity. Colicin E3 is a Y-shaped molecule with the receptor-binding middle domain forming the stalk, the N-terminal translocation domain forming the two globular heads (IPR003058 from INTERPRO), and the C-terminal catalytic domain forming the two globular arms. To neutralise the toxic effects of colicin E3, the host cell produces an immunity protein, which binds to the C-terminal end of the ribonuclease domain and effectively suppresses its activity. This entry represents the ribonuclease domain (also called catalytic or cytotoxic domain) found in various colicins. This domain confers cytotoxic activity to proteins, enabling the formation of nucleolytic breaks in 16S ribosomal RNA. The structure of the domain reveals a highly twisted central beta-sheet elaborated with a short N-terminal alpha-helix [, ]. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0043022 ribosome binding, 0009405 pathogenesis; PDB: 2B5U_C 1JCH_A 1E44_B 2XFZ_Y.
Probab=40.38 E-value=87 Score=21.51 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=20.8
Q ss_pred EEcCCCCEEEEEEccCCCCCCeEEEECCCCCeEEEEE
Q 030505 44 VFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLTMR 80 (176)
Q Consensus 44 V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~~I~ 80 (176)
=+|..|.-+|.-|.. +.++.++|..|+-|.++-
T Consensus 35 w~~~kG~kiYewDsq----HG~lEvy~~~GkHLGe~D 67 (85)
T PF09000_consen 35 WKDKKGRKIYEWDSQ----HGELEVYNKRGKHLGEFD 67 (85)
T ss_dssp EEETTTTEEEEEETT----TTEEEEEETT-BEEEEE-
T ss_pred eEcCCCCEEEEEcCC----CCeEEEEcCCCcCccccc
Confidence 366677777776643 567777777777776654
No 27
>PF05593 RHS_repeat: RHS Repeat; InterPro: IPR006530 These sequences contain two tandem copies of a 21-residue extracellular repeat that is found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin [, , ].
Probab=39.55 E-value=71 Score=17.89 Aligned_cols=30 Identities=27% Similarity=0.233 Sum_probs=14.8
Q ss_pred EcCCCCEEEEEEccCCCCCCeEEEECCCCCeEE
Q 030505 45 FDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLL 77 (176)
Q Consensus 45 ~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~ 77 (176)
||++|+++-.++..-. ....-+|+.|+++.
T Consensus 1 YD~~G~l~~~~d~~G~---~~~y~YD~~g~l~~ 30 (38)
T PF05593_consen 1 YDANGRLTSVTDPDGR---TTRYTYDAAGRLTS 30 (38)
T ss_pred CCCCCCEEEEEcCCCC---EEEEEECCCCCEEE
Confidence 4666666666643311 11233666666443
No 28
>PRK12691 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=37.61 E-value=52 Score=27.01 Aligned_cols=37 Identities=11% Similarity=0.200 Sum_probs=29.0
Q ss_pred ceEEEcCCCCEEEEEEccCCCCCCeEEEECCCCCeEEE
Q 030505 41 HYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLT 78 (176)
Q Consensus 41 ~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~~ 78 (176)
=|.|.+.+|..+|+=+|. |.+...-.|.+++|.+|+.
T Consensus 102 fF~V~~~~G~~~yTR~G~-F~~d~~G~Lvt~~G~~vl~ 138 (262)
T PRK12691 102 YFQIQLPDGETAYTRAGA-FNRSADGQIVTSDGYPVQP 138 (262)
T ss_pred EEEEEcCCCCEEEeeCCC-eeECCCCCEECCCCCEeEe
Confidence 457777889888987776 6666666789999999885
No 29
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=37.61 E-value=1.3e+02 Score=21.05 Aligned_cols=12 Identities=25% Similarity=0.545 Sum_probs=5.6
Q ss_pred ceEEEcCCCCEE
Q 030505 41 HYDVFDISGNLL 52 (176)
Q Consensus 41 ~f~V~D~~G~~v 52 (176)
.+.++|.+|.++
T Consensus 66 nLvl~~~~g~~v 77 (116)
T cd00028 66 NLVIYDGSGTVV 77 (116)
T ss_pred CeEEEcCCCcEE
Confidence 444455444443
No 30
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=37.29 E-value=1.1e+02 Score=20.55 Aligned_cols=9 Identities=44% Similarity=0.523 Sum_probs=5.0
Q ss_pred EEEcCCCCE
Q 030505 43 DVFDISGNL 51 (176)
Q Consensus 43 ~V~D~~G~~ 51 (176)
+|+|++|++
T Consensus 25 ~v~D~~Gnp 33 (92)
T smart00634 25 TVTDANGNP 33 (92)
T ss_pred EEECCCCCC
Confidence 455666553
No 31
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=36.83 E-value=1.4e+02 Score=20.69 Aligned_cols=12 Identities=17% Similarity=0.456 Sum_probs=5.4
Q ss_pred ceEEEcCCCCEE
Q 030505 41 HYDVFDISGNLL 52 (176)
Q Consensus 41 ~f~V~D~~G~~v 52 (176)
.+.|+|.+|.++
T Consensus 65 nLvl~~~~g~~v 76 (114)
T smart00108 65 NLVLYDGDGRVV 76 (114)
T ss_pred CEEEEeCCCCEE
Confidence 444444444443
No 32
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=35.32 E-value=6.7 Score=26.68 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=18.3
Q ss_pred ceEEEcCCCCEEEEEEccCCCCCCeEEEECCCCCeEE
Q 030505 41 HYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLL 77 (176)
Q Consensus 41 ~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~ 77 (176)
=|-|+|.+|..++.-...-+-..+-..+.|++|.+++
T Consensus 58 Y~fi~d~~g~~l~hp~~p~~~G~n~~~~~D~~G~~~i 94 (95)
T PF08269_consen 58 YFFIYDMDGVVLAHPSNPELEGKNLSDLKDPNGKYLI 94 (95)
T ss_dssp --EEE-TTSBEEEESS-GGGTT-B-TT-B-TT--BHH
T ss_pred eEEEEeCCCeEEEcCCCcccCCcccccCCCCCCCEEe
Confidence 4778999998877754333334455567888888764
No 33
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=35.24 E-value=1e+02 Score=25.24 Aligned_cols=57 Identities=12% Similarity=0.025 Sum_probs=40.5
Q ss_pred ceEEEcCCCCEEEEEEccCC----------CCC--CeEEEECCCCCeEEEEEec-ccccccEEEEEeCCC
Q 030505 41 HYDVFDISGNLLLQVDGSLW----------KFQ--KKRVMRDPAGIPLLTMRQK-SFKWRKEWTVHPGES 97 (176)
Q Consensus 41 ~f~V~D~~G~~v~~V~g~~~----------s~~--~~~~l~D~~G~~L~~I~~k-~~s~~~~~~i~~~~~ 97 (176)
...|+|++++++-....+.. -++ -.+.|+|.+|+.|++-|.. ...+...|++.-++.
T Consensus 24 ~v~lvDe~d~~~G~~~r~~~H~~~~~~~~gl~Hra~~v~i~n~~g~lLLQkRs~~K~~~Pg~Wd~s~~GH 93 (247)
T PLN02552 24 ECILVDENDNVVGHDSKYNCHLFEKIEPRGLLHRAFSVFLFNSKYELLLQQRAATKVTFPLVWTNTCCSH 93 (247)
T ss_pred eEEEEcCCCCEEeeeEHhhhhccccccCCCceEEEEEEEEEcCCCeEEEEEecCCCCCCCcceecccCCc
Confidence 88999999999998865321 112 2557889999888777654 234567898887653
No 34
>PRK12640 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=35.17 E-value=39 Score=27.64 Aligned_cols=38 Identities=21% Similarity=0.345 Sum_probs=28.5
Q ss_pred CceEEEcCCCCEEEEEEccCCCCCCeEEEECCCCCeEEE
Q 030505 40 AHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLT 78 (176)
Q Consensus 40 ~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~~ 78 (176)
+=|.|.+.+|+..|+=+|. |.+...-.|.+.+|.+|+.
T Consensus 86 GFF~V~~~~G~~~yTR~G~-F~~d~~G~Lvt~~G~~vlg 123 (246)
T PRK12640 86 GWLAVQAPDGSEAYTRNGS-LQVDANGQLRTANGLPVLG 123 (246)
T ss_pred cEEEEEcCCCCEEEEeCCC-eeECCCCCEEcCCCCCccC
Confidence 3577788889888887666 6666666788888888773
No 35
>PF06355 Aegerolysin: Aegerolysin; InterPro: IPR009413 This family consists of several bacterial and eukaryotic Aegerolysin-like proteins. Aegerolysin and ostreolysin are expressed during formation of primordia and fruiting bodies, and these haemolysins may play an important role in initial phase of fungal fruiting. The bacterial members of this family are expressed during sporulation []. Ostreolysin was found cytolytic to various erythrocytes and tumour cells []. It forms transmembrane pores 4 nm in diameter. Its activity is inhibited by total membrane lipids, and modulated by lysophosphatides.; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0030582 fruiting body development
Probab=35.00 E-value=80 Score=23.33 Aligned_cols=31 Identities=29% Similarity=0.614 Sum_probs=20.9
Q ss_pred CCceEEEECCEEEEEEE--ecccc------------eEEEeecCC
Q 030505 145 SLSFKVYRGKTVLCQVV--VPWAV------------AFTTSNSPG 175 (176)
Q Consensus 145 ~~~f~I~~~~~~VA~i~--~~~~d------------ty~~~~~~~ 175 (176)
...|.++++++.|+.+. ..|+. .|.|+.+|+
T Consensus 70 EGsfdl~dg~~kI~~lyWd~P~~~~~N~~~~~~~~~~Y~V~~~~~ 114 (131)
T PF06355_consen 70 EGSFDLYDGDTKICTLYWDCPWGSKSNKFKVSDSDSKYMVEISGW 114 (131)
T ss_pred eEEEEEEeCCEEEEEEEEeCCCCCCCceEEEecCCCCeEEEeCCc
Confidence 45677888888888888 44443 566666654
No 36
>PRK13211 N-acetylglucosamine-binding protein A; Reviewed
Probab=34.96 E-value=3e+02 Score=24.94 Aligned_cols=60 Identities=13% Similarity=0.151 Sum_probs=41.8
Q ss_pred eeecCCceEEEcCCCCEEEEEEccCCCCCCeEEEECCCCCeEEEEEecccccccEEEEEeCC
Q 030505 35 QGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLTMRQKSFKWRKEWTVHPGE 96 (176)
Q Consensus 35 ~s~~~~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~~I~~k~~s~~~~~~i~~~~ 96 (176)
..+.. .|.|.|...++=|+|... ..+.=...|+|.+|+.+...+..+-.-.-.+.+...+
T Consensus 316 sGL~~-eY~I~dG~~~i~ftv~a~-g~~~vta~V~d~~g~~~~~~~~~v~d~s~~vtL~Ls~ 375 (478)
T PRK13211 316 SGLAK-EYKIGDGAATLDFTVTAT-GDMNVEATVYNHDGEALGSKSQTVNDGSQSVSLDLSK 375 (478)
T ss_pred ecCcc-eeEEcCCcEEEEEEEEec-cceEEEEEEEcCCCCeeeeeeEEecCCceeEEEeccc
Confidence 34566 899998888888888766 3455688999999999999876643212234444433
No 37
>TIGR02488 flgG_G_neg flagellar basal-body rod protein FlgG, Gram-negative bacteria. This family consists of the FlgG protein of the flagellar apparatus in the Proteobacteria and spirochetes.
Probab=34.74 E-value=43 Score=27.41 Aligned_cols=37 Identities=22% Similarity=0.406 Sum_probs=28.6
Q ss_pred ceEEEcCCCCEEEEEEccCCCCCCeEEEECCCCCeEEE
Q 030505 41 HYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLT 78 (176)
Q Consensus 41 ~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~~ 78 (176)
=|.|.+.+|..+|+=+|. |.+...-.|.+.+|.+|+.
T Consensus 100 fF~V~~~~g~~~yTR~G~-F~~d~~G~Lvt~~G~~Vl~ 136 (259)
T TIGR02488 100 FFQVLMPDGTTAYTRDGA-FKINAEGQLVTSNGYPLQP 136 (259)
T ss_pred EEEEEcCCCCeEEeeCCc-eEECCCCCEECCCCCEecC
Confidence 457777888888886666 6666666789999999884
No 38
>TIGR03784 marine_sortase sortase, marine proteobacterial type. Members of this protein family are sortase enzymes, cysteine transpeptidases involved in protein sorting activities. Members of this family tend to be found in proteobacteria, rather than in Gram-positive bacteria where sortases attach proteins to the Gram-positive cell wall or participate in pilin cross-linking. Many species with this sortase appear to contain a signal target sequence, a protein with a Vault protein inter-alpha-trypsin domain (pfam08487) and a von Willebrand factor type A domain (pfam00092), encoded by an adjacent gene. These sortases are designated subfamily 6 according to Comfort and Clubb (2004).
Probab=34.68 E-value=64 Score=24.96 Aligned_cols=35 Identities=9% Similarity=-0.058 Sum_probs=21.3
Q ss_pred CCCCeEEEECCCCCe-EEEEEecccccccEEEEEeC
Q 030505 61 KFQKKRVMRDPAGIP-LLTMRQKSFKWRKEWTVHPG 95 (176)
Q Consensus 61 s~~~~~~l~D~~G~~-L~~I~~k~~s~~~~~~i~~~ 95 (176)
..++++.|.+.+|+. .+++.....--.....+..+
T Consensus 110 ~~GD~I~v~~~~g~~~~Y~V~~~~iV~~~d~~v~~~ 145 (174)
T TIGR03784 110 RPGDVIRLQTPDGQWQSYQVTATRVVDESETGLDLP 145 (174)
T ss_pred CCCCEEEEEECCCeEEEEEEeEEEEECCccceeccC
Confidence 347788888888876 47776654322333444443
No 39
>PRK12817 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=33.82 E-value=51 Score=27.07 Aligned_cols=39 Identities=15% Similarity=0.293 Sum_probs=29.5
Q ss_pred CCceEEEcCCCCEEEEEEccCCCCCCeEEEECCCCCeEEE
Q 030505 39 NAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLT 78 (176)
Q Consensus 39 ~~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~~ 78 (176)
++=|.|.+.+|..+|+=+|. |.+...-.|.+++|.+|+.
T Consensus 96 ~GfF~V~~~~G~~~yTR~G~-F~~d~~G~Lvt~~G~~vl~ 134 (260)
T PRK12817 96 EGFFRVIMADGTYAYTRAGN-FNIDSNGMLVDDNGNRLEI 134 (260)
T ss_pred CcEEEEEcCCCCeEEEeCCc-eeECCCCCEEcCCCCEEEe
Confidence 34567788889888887777 5565666688999998884
No 40
>cd05828 Sortase_D_4 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-4. These sortases recognize a unique sorting signal (LPXTA) and they constitute a specialized sorting pathway found in bacilli. Their substrates are predicted to be predominantly enzymes such as 5'-nucleotidases, glycosyl hydrolase, and subtilase.
Probab=33.78 E-value=60 Score=23.38 Aligned_cols=35 Identities=6% Similarity=-0.076 Sum_probs=19.2
Q ss_pred CCCeEEEECCCCCeEEEEEecccccccEEEEEeCC
Q 030505 62 FQKKRVMRDPAGIPLLTMRQKSFKWRKEWTVHPGE 96 (176)
Q Consensus 62 ~~~~~~l~D~~G~~L~~I~~k~~s~~~~~~i~~~~ 96 (176)
.++++.|.+..+.-.+++.++..--...+++..+.
T Consensus 64 ~Gd~i~v~~~~~~~~Y~V~~~~~v~~~~~~~~~~~ 98 (127)
T cd05828 64 PGDIITLQTLGGTYTYRVTSTRIVDADDTSVLAPS 98 (127)
T ss_pred CCCEEEEEECCEEEEEEEeeEEEECccccEEccCC
Confidence 46677777775555666655543223445555443
No 41
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=33.76 E-value=69 Score=25.87 Aligned_cols=17 Identities=24% Similarity=0.264 Sum_probs=11.0
Q ss_pred CeEEEECCCCCeEEEEE
Q 030505 64 KKRVMRDPAGIPLLTMR 80 (176)
Q Consensus 64 ~~~~l~D~~G~~L~~I~ 80 (176)
-.+.|+|++|+.+.++.
T Consensus 128 vti~I~D~~G~~Vrt~~ 144 (225)
T PRK06655 128 VTVTITDSAGQVVRTID 144 (225)
T ss_pred EEEEEEcCCCCEEEEEe
Confidence 35677777777766553
No 42
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=33.40 E-value=36 Score=22.95 Aligned_cols=17 Identities=18% Similarity=0.212 Sum_probs=11.2
Q ss_pred ceEEEcCCCCEEEEEEc
Q 030505 41 HYDVFDISGNLLLQVDG 57 (176)
Q Consensus 41 ~f~V~D~~G~~v~~V~g 57 (176)
+|.|+|.+|+.|++=..
T Consensus 27 D~~v~d~~g~~vwrwS~ 43 (82)
T PF12690_consen 27 DFVVKDKEGKEVWRWSD 43 (82)
T ss_dssp EEEEE-TT--EEEETTT
T ss_pred EEEEECCCCCEEEEecC
Confidence 78889999999987543
No 43
>PRK12633 flgD flagellar basal body rod modification protein; Provisional
Probab=33.30 E-value=50 Score=26.74 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=12.0
Q ss_pred CeEEEECCCCCeEEEEE
Q 030505 64 KKRVMRDPAGIPLLTMR 80 (176)
Q Consensus 64 ~~~~l~D~~G~~L~~I~ 80 (176)
-++.|+|++|+.+-++.
T Consensus 131 v~v~I~D~~G~vV~t~~ 147 (230)
T PRK12633 131 VTVKVLDPSGAVVRTME 147 (230)
T ss_pred EEEEEEeCCCCEEEEEe
Confidence 36777777777776664
No 44
>cd06166 Sortase_D_5 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-5, represented by Clostridium perfringens CPE2315. Subfamily-5 sortases recognize a nonstandard sorting signal (LAXTG) and have replaced Sortase A in some gram-postive bacteria. They may play a housekeeping role in the cell.
Probab=32.96 E-value=68 Score=23.07 Aligned_cols=19 Identities=5% Similarity=0.011 Sum_probs=9.8
Q ss_pred CCeEEEECCCCCeEEEEEe
Q 030505 63 QKKRVMRDPAGIPLLTMRQ 81 (176)
Q Consensus 63 ~~~~~l~D~~G~~L~~I~~ 81 (176)
++.+.|.+..+.-.+++..
T Consensus 68 Gd~v~v~~~~~~~~Y~V~~ 86 (126)
T cd06166 68 GDEIKVTTKNGTYKYKITS 86 (126)
T ss_pred CCEEEEEECCEEEEEEEEE
Confidence 4555555554444445533
No 45
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=32.62 E-value=78 Score=23.21 Aligned_cols=32 Identities=25% Similarity=0.327 Sum_probs=24.1
Q ss_pred CCCEEEEEEccCCCCC--------CeEEEECCCCCeEEEE
Q 030505 48 SGNLLLQVDGSLWKFQ--------KKRVMRDPAGIPLLTM 79 (176)
Q Consensus 48 ~G~~v~~V~g~~~s~~--------~~~~l~D~~G~~L~~I 79 (176)
+|..++.|+|.+.... =+++|+|.+|++|++-
T Consensus 65 ~~~~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r 104 (149)
T PF11906_consen 65 DGPGVLVVSGTIRNRADFPQALPALELSLLDAQGQPLARR 104 (149)
T ss_pred CCCCEEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEE
Confidence 6888899988753221 2789999999999643
No 46
>PF13511 DUF4124: Domain of unknown function (DUF4124)
Probab=32.27 E-value=38 Score=20.89 Aligned_cols=18 Identities=17% Similarity=0.134 Sum_probs=13.6
Q ss_pred ceEEEcCCCCEEEEEEcc
Q 030505 41 HYDVFDISGNLLLQVDGS 58 (176)
Q Consensus 41 ~f~V~D~~G~~v~~V~g~ 58 (176)
-|.=.|++|+++|.=.-.
T Consensus 15 vYk~~D~~G~v~ysd~P~ 32 (60)
T PF13511_consen 15 VYKWVDENGVVHYSDTPP 32 (60)
T ss_pred EEEEECCCCCEEECccCC
Confidence 577788999999875533
No 47
>PF02972 Phycoerythr_ab: Phycoerythrin, alpha/beta chain; InterPro: IPR004228 Cryptophytes are unicellular photosynthetic algae that use a lumenally located light-harvesting system, which is distinct from the phycobilisome structure found in cyanobacteria and red algae. One of the key components of this system is water-soluble phycoerythrin (PE) 545 whose expression is enhanced by low light levels []. Phycoerythrin (PE) 545 is a heterodimeric of alpha(1)alpha(2)betabeta subunits. Each alpha subunit carries a covalently linked 15,16-dihydrobiliverdin chromophore that probably acts as the final energy acceptor. The architecture of the heterodimer suggests that PE 545 may dock to an acceptor protein via a deep cleft and that energy may be transferred via this intermediary protein to the reaction centre [].; GO: 0030089 phycobilisome; PDB: 1XG0_B 1QGW_B 1XF6_B.
Probab=31.56 E-value=21 Score=22.51 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=12.0
Q ss_pred CCeeeEEcccccCCcceEEEEEE
Q 030505 10 VPIINIVGENFCVPYTMEMLVKK 32 (176)
Q Consensus 10 ~~~~~vv~~~~~~~~~~~l~vkq 32 (176)
+|.|.|.+++.|+..+..|.-.+
T Consensus 2 APvItiFDhRGC~r~~kEytG~k 24 (57)
T PF02972_consen 2 APVITIFDHRGCDRAPKEYTGPK 24 (57)
T ss_dssp EEEEEEEE-TT-SS---S--S--
T ss_pred CCEEEEecccccCCCcccccCCC
Confidence 58899999999998888876533
No 48
>PRK12694 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=31.54 E-value=52 Score=27.02 Aligned_cols=37 Identities=22% Similarity=0.387 Sum_probs=28.6
Q ss_pred ceEEEcCCCCEEEEEEccCCCCCCeEEEECCCCCeEEE
Q 030505 41 HYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLT 78 (176)
Q Consensus 41 ~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~~ 78 (176)
=|.|.+.+|...|+=+|. |.+...-.|.+++|.+|+.
T Consensus 102 fF~V~~~~G~~~yTR~G~-F~~d~~G~Lvt~~G~~Vl~ 138 (260)
T PRK12694 102 FFQVLMPDGTTAYTRDGS-FQTNAQGQLVTSSGYPLQP 138 (260)
T ss_pred EEEEEcCCCCeEEeeCCC-ceECCCCCEECCCCCEecc
Confidence 457778888888886666 6666666788999998885
No 49
>PRK12693 flgG flagellar basal body rod protein FlgG; Provisional
Probab=30.71 E-value=64 Score=26.37 Aligned_cols=37 Identities=24% Similarity=0.431 Sum_probs=28.5
Q ss_pred ceEEEcCCCCEEEEEEccCCCCCCeEEEECCCCCeEEE
Q 030505 41 HYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLT 78 (176)
Q Consensus 41 ~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~~ 78 (176)
=|.|.+.+|...|+=+|. |.+-..-.|.+++|.+|+.
T Consensus 102 fF~v~~~~G~~~yTR~G~-F~~d~~G~Lvt~~G~~vl~ 138 (261)
T PRK12693 102 FFQVQLPDGTIAYTRDGS-FKLDQDGQLVTSGGYPLQP 138 (261)
T ss_pred EEEEEcCCCCeEEeeCCC-eeECCCCCEECCCCCEEee
Confidence 356777889888886666 6666666789999999885
No 50
>PRK12818 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=30.70 E-value=60 Score=26.60 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=27.9
Q ss_pred CceEEEcCCCCEEEEEEccCCCCCCeEEEECCCCCeEEE
Q 030505 40 AHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLT 78 (176)
Q Consensus 40 ~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~~ 78 (176)
+=|.|.+.+|+..|+=+|. |.+...-.|.+++|.+|+-
T Consensus 101 GFF~V~~~~G~~~YTR~G~-F~~d~~G~Lvt~~G~~vlg 138 (256)
T PRK12818 101 GFFTVERNAGNNYYTRDGH-FHVDTQGYLVNDSGYYVLG 138 (256)
T ss_pred ceEEEEcCCCCeEEeeCCC-eeECCCCCEEcCCCCEEec
Confidence 3577788888878887776 5555555688889988874
No 51
>smart00800 uDENN Domain always found upstream of DENN domain, found in a variety of signalling proteins. The uDENN domain is part of the tripartite DENN domain. It is always found upstream of the DENN domain itself, which is found in a variety of signalling proteins involved in Rab-mediated processes or regulation of MAPKs signalling pathways. The DENN domain is always encircled on both sides by more divergent domains, called uDENN (for upstream DENN) and dDENN (for downstream DENN). The function of the DENN domain remains to date unclear, although it appears to represent a good candidate for a GTP/GDP exchange activity.
Probab=30.47 E-value=60 Score=21.81 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=19.2
Q ss_pred ccccCCcceEEEEEEEe-eeecCCceEEEcCCCCEEE
Q 030505 18 ENFCVPYTMEMLVKKRI-QGMSNAHYDVFDISGNLLL 53 (176)
Q Consensus 18 ~~~~~~~~~~l~vkqk~-~s~~~~~f~V~D~~G~~v~ 53 (176)
+.||-+.-..+...... .+-.= .|.++|++|+..|
T Consensus 47 ~~FCfP~G~~~~~~~~~~~~~~f-~FvLT~~dG~r~y 82 (89)
T smart00800 47 PLFCFPEGLLFVTQKSSKDPQFF-SFVLTDIDGSRRY 82 (89)
T ss_pred CeeECCCCeEeecccCCCCCcEE-EEEEECCCCCEEE
Confidence 67887766655531111 11111 4677888887665
No 52
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=30.24 E-value=75 Score=20.45 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=14.4
Q ss_pred CCeEEEECCCCCeEEEEE
Q 030505 63 QKKRVMRDPAGIPLLTMR 80 (176)
Q Consensus 63 ~~~~~l~D~~G~~L~~I~ 80 (176)
.-++.|+|.+|++|..++
T Consensus 45 ~WrV~V~~~~G~~l~~~~ 62 (66)
T PF11141_consen 45 DWRVEVVDEDGQVLGSLR 62 (66)
T ss_pred CEEEEEEcCCCCEEEEEE
Confidence 348889999999888765
No 53
>PF10830 DUF2553: Protein of unknown function (DUF2553); InterPro: IPR020140 This entry contains proteins with no known function.
Probab=28.70 E-value=1.5e+02 Score=19.87 Aligned_cols=32 Identities=16% Similarity=0.364 Sum_probs=23.8
Q ss_pred EEEeeeCCCceEEEECCEEEEEEEecccceEE
Q 030505 138 YVTGSFTSLSFKVYRGKTVLCQVVVPWAVAFT 169 (176)
Q Consensus 138 ~i~G~~~~~~f~I~~~~~~VA~i~~~~~dty~ 169 (176)
.|.|.|-+.....|.++..|+++.+.-.+.|.
T Consensus 9 ~V~gkf~ng~l~LY~~~e~IG~~~~~~~~~y~ 40 (76)
T PF10830_consen 9 KVTGKFKNGGLELYHDNEMIGEIYMTEENQYE 40 (76)
T ss_pred ceEEEecCCcEEEEeccceeeeEccCCCceEE
Confidence 46888888999999998899998733333443
No 54
>PF04170 NlpE: NlpE N-terminal domain; InterPro: IPR007298 This family represents a bacterial outer membrane lipoprotein that is necessary for signalling by the Cpx pathway []. This pathway responds to cell envelope disturbances and increases the expression of periplasmic protein folding and degradation factors. While the molecular function of the NlpE protein is unknown, it may be involved in detecting bacterial adhesion to abiotic surfaces. NlpE from Escherichia coli and Salmonella typhi is also known to confer copper tolerance in copper-sensitive strains of E. coli, and may be involved in copper efflux and delivery of copper to copper-dependent enzymes [].; PDB: 3LHN_A 2Z4I_B 2Z4H_A.
Probab=28.68 E-value=1.9e+02 Score=19.47 Aligned_cols=11 Identities=9% Similarity=0.332 Sum_probs=5.1
Q ss_pred cCCcceEEEEE
Q 030505 21 CVPYTMEMLVK 31 (176)
Q Consensus 21 ~~~~~~~l~vk 31 (176)
|....++|.++
T Consensus 10 C~GI~t~L~L~ 20 (87)
T PF04170_consen 10 CPGIKTTLTLN 20 (87)
T ss_dssp SSEEEEEEEE-
T ss_pred CCCeEEEEEEC
Confidence 44445555553
No 55
>PRK10523 lipoprotein involved with copper homeostasis and adhesion; Provisional
Probab=28.51 E-value=1.2e+02 Score=24.70 Aligned_cols=36 Identities=19% Similarity=0.256 Sum_probs=0.0
Q ss_pred eeecCCceEEEcCCCCE-EEEEEccCCCCCCeEEEECCCCCeE
Q 030505 35 QGMSNAHYDVFDISGNL-LLQVDGSLWKFQKKRVMRDPAGIPL 76 (176)
Q Consensus 35 ~s~~~~~f~V~D~~G~~-v~~V~g~~~s~~~~~~l~D~~G~~L 76 (176)
|...++.++.+|++|+. -|+|.+. .+.++|.+|+++
T Consensus 91 w~~~~~~i~L~~~~g~~~yF~v~e~------~L~mLD~~G~~i 127 (234)
T PRK10523 91 WARTADKLVLTDSKGEKSYYRAKGD------ALEMLDREGNPI 127 (234)
T ss_pred EEecCCEEEEecCCCCEeEEEECCC------EEEEecCCCCcc
No 56
>COG2849 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.49 E-value=1.9e+02 Score=23.17 Aligned_cols=58 Identities=14% Similarity=-0.073 Sum_probs=42.8
Q ss_pred CCceEEEcCCCCEEEEEEccCCCCCCeEEEECCCCCeEEEEEecccccccEEEEEeCC
Q 030505 39 NAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLTMRQKSFKWRKEWTVHPGE 96 (176)
Q Consensus 39 ~~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~~I~~k~~s~~~~~~i~~~~ 96 (176)
.+....+.++|++...+.-+-...-.....++.+|....++..+--.....+..|+..
T Consensus 158 ~g~~k~yy~nGkl~~e~~~knG~~~G~~k~Y~enGkl~~e~~~kng~~~G~~~~yde~ 215 (230)
T COG2849 158 EGIAKTYYENGKLLSEVPYKNGKKNGVVKIYYENGKLVEEVTYKNGKLDGVVKEYDEA 215 (230)
T ss_pred cccEEEEcCCCcEEEeecccCCcccceEEEEccCCCEeEEEEecCCcccccEEEEecC
Confidence 4578889999999988888776666778888999988888877753334555666544
No 57
>PRK00122 rimM 16S rRNA-processing protein RimM; Provisional
Probab=27.70 E-value=1.7e+02 Score=22.23 Aligned_cols=27 Identities=15% Similarity=-0.072 Sum_probs=14.9
Q ss_pred EEECCCCCeEEEEEeccc-ccccEEEEE
Q 030505 67 VMRDPAGIPLLTMRQKSF-KWRKEWTVH 93 (176)
Q Consensus 67 ~l~D~~G~~L~~I~~k~~-s~~~~~~i~ 93 (176)
.++|.+|+.|.+|..=.- .-.+-|.|.
T Consensus 109 ~V~d~~g~~lG~V~~v~~~~a~dll~I~ 136 (172)
T PRK00122 109 EVVDEDGEELGKVTDILETGANDVLVVL 136 (172)
T ss_pred EEEeCCCcEEEEEEEEccCCCceEEEEE
Confidence 456666777777765422 234445554
No 58
>TIGR02527 dot_icm_IcmQ Dot/Icm secretion system protein IcmQ. Members of this protein family are the IcmQ component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the literature now seems to favor calling this the Dot/Icm system. This protein was shown to be essential for translocation (PubMed:15661013).
Probab=27.68 E-value=31 Score=26.86 Aligned_cols=61 Identities=15% Similarity=0.262 Sum_probs=40.9
Q ss_pred cccccCCcceEEEEEEEeeeecCCceEEEcCCCCEEEEEEc-cCCCCCCeEEEECCCCCeEEEEEeccccc
Q 030505 17 GENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDG-SLWKFQKKRVMRDPAGIPLLTMRQKSFKW 86 (176)
Q Consensus 17 ~~~~~~~~~~~l~vkqk~~s~~~~~f~V~D~~G~~v~~V~g-~~~s~~~~~~l~D~~G~~L~~I~~k~~s~ 86 (176)
+|.|...+.++..+|.|-=.+.. .|. +..|+. ..++.......+|.-|+||++++.+.+.+
T Consensus 95 RPIYanE~dvk~~IksKenk~NE-AYV--------aiyI~q~dIl~~~~dk~p~Dk~GkpLltLKdkai~L 156 (182)
T TIGR02527 95 RPIYADEADAKAAIKQKENKLNE-ACV--------AIAIDQSDIIHLSADKAPKDKLGKLLLTLKDKAIKL 156 (182)
T ss_pred CCCcCCHHHHHHHHHhhhccccc-eEE--------EEEEchHhcccCCcccCcccccCCcccccchhhhch
Confidence 56665555555556555434443 443 334444 36788888888999999999999998754
No 59
>PF15072 DUF4539: Domain of unknown function (DUF4539)
Probab=27.61 E-value=57 Score=22.33 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=19.8
Q ss_pred CCeEEEECCCCCeEEEEEecccc
Q 030505 63 QKKRVMRDPAGIPLLTMRQKSFK 85 (176)
Q Consensus 63 ~~~~~l~D~~G~~L~~I~~k~~s 85 (176)
--.+.+.|++|+--++||++.+.
T Consensus 20 D~~v~l~DpTG~i~~tiH~~v~~ 42 (86)
T PF15072_consen 20 DAFVVLKDPTGEIRGTIHRKVLE 42 (86)
T ss_pred CeEEEEECCCCcEEEEEeHHHHh
Confidence 34778999999999999999874
No 60
>PRK12634 flgD flagellar basal body rod modification protein; Reviewed
Probab=26.42 E-value=1e+02 Score=24.81 Aligned_cols=17 Identities=12% Similarity=0.104 Sum_probs=12.6
Q ss_pred eEEEECCCCCeEEEEEe
Q 030505 65 KRVMRDPAGIPLLTMRQ 81 (176)
Q Consensus 65 ~~~l~D~~G~~L~~I~~ 81 (176)
.+.|+|.+|+.+.++.-
T Consensus 125 ~i~I~d~~G~~V~t~~l 141 (221)
T PRK12634 125 NFEITDANGAFVKQISV 141 (221)
T ss_pred EEEEEcCCCCEEEEEec
Confidence 57788888888877653
No 61
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=25.87 E-value=90 Score=24.88 Aligned_cols=48 Identities=13% Similarity=0.148 Sum_probs=31.9
Q ss_pred CCcceEEEEEEEeeeecCCceEEEcCCCCEEEEEEcc-----CCCCCCeEEEECCCC
Q 030505 22 VPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGS-----LWKFQKKRVMRDPAG 73 (176)
Q Consensus 22 ~~~~~~l~vkqk~~s~~~~~f~V~D~~G~~v~~V~g~-----~~s~~~~~~l~D~~G 73 (176)
+....++++-. .+.+.. +|+|.+|+++|.-=-+ ..++...+.+.|++.
T Consensus 80 a~~~~t~~~DP-s~tl~~---DI~d~~G~vi~~kGt~vNPLd~v~~~~~LvfiDg~D 132 (202)
T TIGR02743 80 TETPKTWYFDP-SITLAQ---DILDEKGQVLAKKGTRINPLDRVSLSKTLLFFDADD 132 (202)
T ss_pred cccCceEEeCC-cEEecC---cccCCCCCEEECCCCEECCcccccCCceEEEEeCCC
Confidence 55666777766 345544 8999999998864222 245667777777655
No 62
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=24.62 E-value=2.1e+02 Score=22.45 Aligned_cols=52 Identities=13% Similarity=0.107 Sum_probs=36.1
Q ss_pred cceEEEEEEEeeeecCCceEEEcCCCCEEEEEEccCCC----------CCCeEEEECCCCCeEEEEEec
Q 030505 24 YTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWK----------FQKKRVMRDPAGIPLLTMRQK 82 (176)
Q Consensus 24 ~~~~l~vkqk~~s~~~~~f~V~D~~G~~v~~V~g~~~s----------~~~~~~l~D~~G~~L~~I~~k 82 (176)
..-.|++.. + ..+++|++|.+-|++.+.-+. -.+.+.+++.+|.+..+++-+
T Consensus 39 ~~Pdy~~~~----~---~~~~yd~~G~l~y~l~a~~~~Hy~~~~~t~f~~P~l~~y~~~~~~~W~v~A~ 100 (192)
T PRK10893 39 NDPTYQSQH----T---DTVVYNPEGALSYKLVAQHVEYYSDQAVSWFTQPVLTTFDKNKVPTWSVRAD 100 (192)
T ss_pred CCCCEEEec----c---EEEEECCCCCEEEEEEecceEEcCCCCCEEEeCCeEEEECCCCcceEEEEeC
Confidence 334666644 2 448899999999999998421 256778888887776666443
No 63
>TIGR02273 16S_RimM 16S rRNA processing protein RimM. This family consists of the bacterial protein RimM (YfjA, 21K), a 30S ribosomal subunit-binding protein implicated in 16S ribsomal RNA processing. It has been partially characterized in Escherichia coli, is found with other translation-associated genes such as trmD. It is broadly distributed among bacteria, including some minimal genomes such the aphid endosymbiont Buchnera aphidicola. The protein contains a PRC-barrel domain that it shares with other protein families (pfam05239) and a unique domain (pfam01782). This model describes the full-length protein. A member from Arabidopsis (plant) has additional N-terminal sequence likely to represent a chloroplast transit peptide.
Probab=24.15 E-value=1.6e+02 Score=22.15 Aligned_cols=29 Identities=10% Similarity=-0.121 Sum_probs=17.6
Q ss_pred EEEECCCCCeEEEEEeccc-ccccEEEEEe
Q 030505 66 RVMRDPAGIPLLTMRQKSF-KWRKEWTVHP 94 (176)
Q Consensus 66 ~~l~D~~G~~L~~I~~k~~-s~~~~~~i~~ 94 (176)
+.++|.+|+.|.+|..=.- .-.+-|.|..
T Consensus 103 ~~V~d~~~~~lG~V~~v~~~~a~dll~V~~ 132 (165)
T TIGR02273 103 LEVVTEEGEELGKVVEILETGANDVLVVRS 132 (165)
T ss_pred cEEEcCCCcEEEEEEEEecCCCccEEEEEE
Confidence 3566777777777766532 2345566664
No 64
>PF06788 UPF0257: Uncharacterised protein family (UPF0257); InterPro: IPR010646 This is a group of proteins of unknown function.; GO: 0005886 plasma membrane
Probab=23.37 E-value=1.7e+02 Score=23.98 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=23.4
Q ss_pred EEEcCCCCEEEEEEccCCC--CCCeEEEECCCCCeEEEE
Q 030505 43 DVFDISGNLLLQVDGSLWK--FQKKRVMRDPAGIPLLTM 79 (176)
Q Consensus 43 ~V~D~~G~~v~~V~g~~~s--~~~~~~l~D~~G~~L~~I 79 (176)
+++|++|.+.++|.+++-. .-+.+.+.|..-+.-+.+
T Consensus 52 t~~de~g~v~~~v~~~l~~eGCfd~l~~~~~~~n~~~~L 90 (236)
T PF06788_consen 52 TLYDEDGEVTKRVSLTLSREGCFDTLELYDKENNTHLAL 90 (236)
T ss_pred EEEcCCCcEEEEEEEEECCccceeeeeecccccccceEE
Confidence 8999999999999998532 123444455433333333
No 65
>PRK13828 rimM 16S rRNA-processing protein RimM; Provisional
Probab=23.30 E-value=2.1e+02 Score=21.59 Aligned_cols=27 Identities=11% Similarity=-0.018 Sum_probs=14.5
Q ss_pred EEECCCCCeEEEEEeccc-ccccEEEEE
Q 030505 67 VMRDPAGIPLLTMRQKSF-KWRKEWTVH 93 (176)
Q Consensus 67 ~l~D~~G~~L~~I~~k~~-s~~~~~~i~ 93 (176)
.+.|.+|+.|.+|..=.- .-.+-|.|.
T Consensus 89 ~V~d~~g~~lG~V~~V~~~ga~dvlvV~ 116 (161)
T PRK13828 89 AAVDTGGALLGRVKAVHNFGAGDILEIA 116 (161)
T ss_pred EEEeCCCCEEEEEEEEccCCCccEEEEE
Confidence 445666666666655432 224455555
No 66
>PF05171 HemS: Haemin-degrading HemS.ChuX domain; InterPro: IPR007845 The Yersinia enterocolitica O:8 periplasmic binding protein-dependent transport system consisted of four proteins: the periplasmic haemin-binding protein HemT, the haemin permease protein HemU, the ATP-binding hydrophilic protein HemV and the haemin-degrading protein HemS. The structure for HemS has been solved and consists of a tandem repeat of the domain represented in this entry[].; GO: 0006826 iron ion transport; PDB: 2HQ2_A 2J0R_A 2J0P_A 1U9T_A.
Probab=22.78 E-value=1.9e+02 Score=20.84 Aligned_cols=71 Identities=13% Similarity=0.052 Sum_probs=35.9
Q ss_pred CCCeeeEEcccccCCcceEEEEEEEeeeecCCceEEEcCC---------CCEEEEEEccC-CCCCCeEEEECCCCCeEEE
Q 030505 9 GVPIINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDIS---------GNLLLQVDGSL-WKFQKKRVMRDPAGIPLLT 78 (176)
Q Consensus 9 ~~~~~~vv~~~~~~~~~~~l~vkqk~~s~~~~~f~V~D~~---------G~~v~~V~g~~-~s~~~~~~l~D~~G~~L~~ 78 (176)
+.|++..|+.+.|.+..+=-+= + +...+.-+.|.|++ =.-+|-|+... -.....+.++|.+|+.+.+
T Consensus 34 g~~vm~~vrN~g~vq~~~G~~~--~-~~~~g~~~~vl~~~~~L~l~~~~~~~~w~v~~~~~~g~~~Slq~fD~~G~~i~k 110 (129)
T PF05171_consen 34 GLPVMAFVRNPGAVQEHTGPYE--N-LRRMGPWLNVLDPGFDLRLFFSHWASAWAVREPTRDGVRTSLQFFDAQGEAIHK 110 (129)
T ss_dssp T-SEEEEEEESSEEEEEEE-----S-EEECTTEEEEE-TTEEEEEEGGGEEEEEEEEEEETTSEEEEEEEEETTS-EEEE
T ss_pred CCcEEEEECCCceeEEEecccc--C-eeccCCEEEEECCCceEEEehhheeEEEEEEecCCCCcEEEEEEECCCCCEEEE
Confidence 3477778888877775432211 1 12222244444443 12233333321 1234578899999999988
Q ss_pred EEec
Q 030505 79 MRQK 82 (176)
Q Consensus 79 I~~k 82 (176)
|..+
T Consensus 111 i~~~ 114 (129)
T PF05171_consen 111 IFGT 114 (129)
T ss_dssp EEES
T ss_pred EECC
Confidence 8665
No 67
>TIGR00156 conserved hypothetical protein TIGR00156. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae.
Probab=22.26 E-value=1.7e+02 Score=21.54 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=15.9
Q ss_pred CCeEEEECCCCCeEEEEEeccc
Q 030505 63 QKKRVMRDPAGIPLLTMRQKSF 84 (176)
Q Consensus 63 ~~~~~l~D~~G~~L~~I~~k~~ 84 (176)
.+++.+.|.+|+..++|.++.+
T Consensus 72 ~d~Y~F~D~TG~I~VeId~~~w 93 (126)
T TIGR00156 72 DDRYVFRDKSGEINVVIPAAVW 93 (126)
T ss_pred CceEEEECCCCCEEEEECHHHc
Confidence 3567788888887778877654
No 68
>PRK12819 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=21.80 E-value=1.3e+02 Score=24.54 Aligned_cols=38 Identities=21% Similarity=0.418 Sum_probs=26.7
Q ss_pred CceEEEcCCCCEEEEEEccCCCCCCeEEEECCCCCeEEE
Q 030505 40 AHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLT 78 (176)
Q Consensus 40 ~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~~ 78 (176)
+.|-+.+.+|...|+=+|. |.+...-.|.+++|.+|+-
T Consensus 99 ~gFf~v~~~G~~~yTR~G~-F~~d~~G~Lvt~~G~~vlg 136 (257)
T PRK12819 99 SSFFVTSKNGETFLTRDGS-FTLNSDRYLQTASGAFVMG 136 (257)
T ss_pred CEEEEEcCCCCeeEeeCCC-eeECCCCCEEcCCCCEEec
Confidence 3566667788878886666 5565666678888887773
No 69
>PF07661 MORN_2: MORN repeat variant; InterPro: IPR011652 This entry represents an apparent variant of the IPR003409 from INTERPRO repeat.
Probab=21.73 E-value=1.1e+02 Score=14.35 Aligned_cols=16 Identities=13% Similarity=0.245 Sum_probs=12.1
Q ss_pred CceEEEcCCCCEEEEE
Q 030505 40 AHYDVFDISGNLLLQV 55 (176)
Q Consensus 40 ~~f~V~D~~G~~v~~V 55 (176)
|.+..++++|++....
T Consensus 3 G~~~~yy~nG~l~~~~ 18 (22)
T PF07661_consen 3 GEWKFYYENGKLKSEG 18 (22)
T ss_pred ceEEEEeCCCCEEEEE
Confidence 4678888888887654
No 70
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.59 E-value=51 Score=29.60 Aligned_cols=40 Identities=15% Similarity=0.266 Sum_probs=34.8
Q ss_pred ceEEEcCCCCEEEEEEccCCCCCCeEEEECCCCCeEEEEE
Q 030505 41 HYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLTMR 80 (176)
Q Consensus 41 ~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~~I~ 80 (176)
+|+=.|..-..|..-.|+.++-.+++.|.|++|+|+..=.
T Consensus 345 nyTRLDDp~E~i~~TQGrPlsP~DEvrvvD~dg~pv~pGE 384 (542)
T COG1021 345 NYTRLDDPPEIIIHTQGRPLSPDDEVRVVDADGNPVAPGE 384 (542)
T ss_pred cccccCCchHheeecCCCcCCCcceeEEecCCCCCCCCCC
Confidence 5677788889999999999999999999999999986433
No 71
>PF01376 Enterotoxin_b: Heat-labile enterotoxin beta chain; InterPro: IPR001835 Escherichia coli heat-labile enterotoxin is a bacterial protein toxin with an AB5 multimer structure, in which the B pentamer has a membrane-binding function and the A chain (IPR001144 from INTERPRO) is needed for enzymatic activity []. The B subunits are arranged as a donut-shaped pentamer, each subunit participating in ~30 hydrogen bonds and 6 salt bridges with its two neighbours []. The A subunit has a less well-defined secondary structure. It predominantly interacts with the pentamer via the C-terminal A2 fragment, which runs through the charged central pore of the B subunits. A putative catalytic residue in the A1 fragment (Glu112) lies close to a hydrophobic region, which packs two loops together. It is thought that this region might be important for catalysis and membrane translocation [].; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1LTA_D 2XRS_O 1LTS_E 1LTT_H 1TET_P 1JQY_Y 1PZI_D 1DJR_E 1EEF_D 1LTB_E ....
Probab=21.58 E-value=1.5e+02 Score=20.29 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=14.7
Q ss_pred CCEEEEEEEecccceEEEeecCCC
Q 030505 153 GKTVLCQVVVPWAVAFTTSNSPGS 176 (176)
Q Consensus 153 ~~~~VA~i~~~~~dty~~~~~~~~ 176 (176)
|.+..+-|+|+=+-||.|++ |||
T Consensus 33 gkrem~iitf~ngatfqvev-pgs 55 (102)
T PF01376_consen 33 GKREMVIITFKNGATFQVEV-PGS 55 (102)
T ss_dssp TTEEEEEEEETTS-EEEE---SST
T ss_pred CceeEEEEEecCCcEEEEec-CCc
Confidence 35666677788888999986 665
No 72
>PRK14591 rimM 16S rRNA-processing protein RimM; Provisional
Probab=21.13 E-value=2.3e+02 Score=21.60 Aligned_cols=15 Identities=0% Similarity=-0.048 Sum_probs=8.4
Q ss_pred EEECCCCCeEEEEEe
Q 030505 67 VMRDPAGIPLLTMRQ 81 (176)
Q Consensus 67 ~l~D~~G~~L~~I~~ 81 (176)
.++|.+|++|.+|..
T Consensus 109 ~V~d~~g~~lG~V~~ 123 (169)
T PRK14591 109 SVKNINNDSFGVVVD 123 (169)
T ss_pred EEEeCCCCEEEEEEE
Confidence 345556666665554
No 73
>PRK12692 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=21.05 E-value=92 Score=25.64 Aligned_cols=38 Identities=13% Similarity=0.183 Sum_probs=28.2
Q ss_pred CCceEEEcCCCCEEEEEEccCCCCCCeEEEECCCCCeEE
Q 030505 39 NAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLL 77 (176)
Q Consensus 39 ~~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~ 77 (176)
++=|.|.+.+|...|+=+|. |.+...-.|.+++|.+|+
T Consensus 100 ~GFF~V~~~~G~~~yTR~G~-F~~d~~G~Lvt~~G~~Vl 137 (262)
T PRK12692 100 RGYFQVTSPNGEIQYTRAGS-FNKNAAGQLVTMEGYAVD 137 (262)
T ss_pred CceEEEECCCCCeEEEeCCC-ceECCCCCEEcCCCCCcc
Confidence 33466778889878886666 666666678899998886
No 74
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=21.05 E-value=46 Score=29.06 Aligned_cols=40 Identities=23% Similarity=0.277 Sum_probs=28.2
Q ss_pred cCCceEEEcCCCCEEEEEEccCCCCCCeEEEECCCCCeEE
Q 030505 38 SNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLL 77 (176)
Q Consensus 38 ~~~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~ 77 (176)
+||=|-+||.+|+-+..=.+...-.++=+.++|+.|.++.
T Consensus 93 ~DGYFF~YD~~G~NlvHPrQpelvG~nlw~L~D~rGd~~I 132 (459)
T COG4564 93 SDGYFFVYDYQGTNLVHPRQPELVGQNLWQLTDPRGDRVI 132 (459)
T ss_pred CCceEEEEecCCccccCCCCccccccchhhccCCCcChHH
Confidence 5667788888887776666554545566678888887754
No 75
>PRK02939 lipoprotein; Reviewed
Probab=20.44 E-value=2.3e+02 Score=23.24 Aligned_cols=33 Identities=18% Similarity=0.211 Sum_probs=22.4
Q ss_pred EEEcCCCCEEEEEEccCCC--CCCeEEEECCCCCe
Q 030505 43 DVFDISGNLLLQVDGSLWK--FQKKRVMRDPAGIP 75 (176)
Q Consensus 43 ~V~D~~G~~v~~V~g~~~s--~~~~~~l~D~~G~~ 75 (176)
+++|++|.+.++|.+.+.. .-+.+.+.|.+.+.
T Consensus 52 t~~ne~g~v~~~v~~~~~~eGCfdtl~~~~~~~n~ 86 (236)
T PRK02939 52 TLMDEQGEVTKRVSGTLSEEGCFDTLELLDLENNT 86 (236)
T ss_pred EEEcCCCcEEEEEEEEEcCCCceeeeEeccccccc
Confidence 8999999999999998532 12355555554433
No 76
>PRK13239 alkylmercury lyase; Provisional
Probab=20.43 E-value=1.3e+02 Score=24.14 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=23.9
Q ss_pred EEEcCCCCEEEEEEccCCCCCCeEEEECCCCCeEEEE
Q 030505 43 DVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLTM 79 (176)
Q Consensus 43 ~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~~I 79 (176)
+++|++|+++. +-||..+.-+..-.+|+.|+..
T Consensus 63 ~~~d~~g~iv~----~plS~~pT~H~v~v~Gr~lyt~ 95 (206)
T PRK13239 63 TEYDEDGRIIG----YGLTLRPTPHRFEVDGRQLYTW 95 (206)
T ss_pred eEECCCCCEEe----ccccCCCcCcEEEECCEEEEee
Confidence 68999999954 5678766555555588888766
No 77
>COG4786 FlgG Flagellar basal body rod protein [Cell motility and secretion]
Probab=20.19 E-value=98 Score=25.80 Aligned_cols=39 Identities=18% Similarity=0.446 Sum_probs=30.2
Q ss_pred CCceEEEcCCCCEEEEEEccCCCCCCeEEEECCCCCeEEE
Q 030505 39 NAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLT 78 (176)
Q Consensus 39 ~~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~~ 78 (176)
++=|.|...+|+..|+=+|. |++...-.|+..+|-+|+-
T Consensus 100 ~gfF~I~~~dG~~~YTR~G~-F~~d~~G~LVT~~G~~vl~ 138 (265)
T COG4786 100 DGFFQIQTPDGTIAYTRDGS-FTVDEEGQLVTSNGYPVLD 138 (265)
T ss_pred CceEEEEcCCCCEEEeeCCc-eeECCCCCEEeCCCCCccC
Confidence 44678888999999999988 6666666777777777665
No 78
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=20.14 E-value=1.4e+02 Score=23.91 Aligned_cols=49 Identities=10% Similarity=0.070 Sum_probs=32.7
Q ss_pred CCcceEEEEEEEeeeecCCceEEEcCCCCEEEEEEcc-----CCCCCCeEEEECCCCC
Q 030505 22 VPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGS-----LWKFQKKRVMRDPAGI 74 (176)
Q Consensus 22 ~~~~~~l~vkqk~~s~~~~~f~V~D~~G~~v~~V~g~-----~~s~~~~~~l~D~~G~ 74 (176)
+....++++-. .+.+.. +|+|.+|+++|.-=-+ ...+...+.+.|++..
T Consensus 78 a~~~rt~~~DP-s~tl~~---DI~d~~G~vi~~~G~~vNPLd~v~~~~~LvfiDgdD~ 131 (209)
T PRK13738 78 AEKYRSRLFDP-SVRLAA---DIRDNEGRVFARQGEVVNPLQYVPFNQTLYFINGDDP 131 (209)
T ss_pred cccCceEEeCC-cEEecC---ccCCCCCCEEEcCCCeECcccccCCCceEEEEeCCCH
Confidence 55667777766 345544 8999999999864222 2456777777776553
Done!