Query 030505
Match_columns 176
No_of_seqs 117 out of 583
Neff 7.5
Searched_HMMs 29240
Date Tue Mar 26 00:03:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030505.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030505hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zxu_A AT5G01750 protein; PFAM 100.0 1.8E-36 6.1E-41 241.7 18.6 169 4-175 16-194 (217)
2 1zxu_A AT5G01750 protein; PFAM 98.4 1.3E-06 4.3E-11 68.9 9.3 99 22-125 59-162 (217)
3 3c5n_A Tubby-related protein 1 73.0 32 0.0011 27.0 10.1 81 76-161 16-117 (246)
4 2fim_A Tubby related protein 1 64.8 52 0.0018 26.3 10.9 85 72-161 36-141 (276)
5 2v2f_A Penicillin binding prot 59.7 5.6 0.00019 19.9 1.9 14 42-55 7-20 (26)
6 4h3o_A Lectin; cadmium, plant 57.9 19 0.00064 24.1 4.9 9 38-46 27-35 (105)
7 4he6_A Peptidase family U32; u 47.2 23 0.00079 22.9 3.8 34 45-79 15-50 (89)
8 2vnl_A Bifunctional tail prote 38.3 66 0.0022 23.4 5.3 68 4-81 35-104 (151)
9 1hzt_A Isopentenyl diphosphate 36.6 32 0.0011 24.9 3.6 53 40-92 4-64 (190)
10 3dzw_A Agglutinin; lectin, man 33.8 1E+02 0.0035 20.3 5.8 38 38-77 27-64 (109)
11 3c12_A FLGD, flagellar protein 30.3 21 0.00072 25.2 1.6 16 65-80 42-57 (138)
12 3r0e_B Lectin; carbohydrate bi 30.2 1.2E+02 0.0041 20.1 5.5 10 38-47 32-41 (110)
13 2dho_A Isopentenyl-diphosphate 29.8 86 0.003 23.9 5.2 56 39-94 26-93 (235)
14 2csp_A RIM-BP2, RIM binding pr 29.4 32 0.0011 24.4 2.3 26 147-172 57-82 (130)
15 3mez_B Mannose-specific lectin 29.1 1.2E+02 0.0041 20.2 5.4 41 38-78 32-72 (113)
16 1xg0_B Phycoerythrin alpha-2 c 28.5 14 0.00046 23.3 0.2 22 9-30 7-28 (67)
17 1xg0_A Phycoerythrin alpha-3 c 26.9 16 0.00055 23.5 0.4 22 9-30 7-28 (76)
18 2fkb_A Putative nudix hydrolas 25.7 1.1E+02 0.0038 21.4 4.9 54 38-92 8-69 (180)
19 2h1z_A Hybrid atracotoxin; bet 24.9 55 0.0019 18.1 2.3 13 45-57 27-39 (39)
20 2pny_A Isopentenyl-diphosphate 24.9 93 0.0032 24.0 4.6 56 39-94 37-104 (246)
21 3oe3_A Putative periplasmic pr 23.9 1.7E+02 0.0057 19.6 5.1 46 26-78 39-84 (98)
22 2z4i_A Copper homeostasis prot 23.0 1.7E+02 0.0058 22.7 5.7 12 65-76 96-107 (233)
23 3r0e_A Lectin; carbohydrate bi 22.7 1.7E+02 0.0058 19.3 5.3 9 69-77 55-63 (109)
24 3mez_A Mannose-specific lectin 21.8 1.2E+02 0.0042 20.1 4.2 38 38-78 28-65 (111)
25 2ln7_A LPXTG-SITE transpeptida 21.5 18 0.00063 25.8 -0.1 18 63-80 79-96 (147)
26 1q27_A Putative nudix hydrolas 20.5 1.1E+02 0.0036 21.3 3.9 52 39-91 6-65 (171)
27 3my2_A Lipopolysaccharide expo 20.4 93 0.0032 22.6 3.6 40 43-82 34-83 (175)
No 1
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=100.00 E-value=1.8e-36 Score=241.71 Aligned_cols=169 Identities=30% Similarity=0.582 Sum_probs=127.1
Q ss_pred CCCCCCCCeeeEEcccccCCcceEEEEEEEeeeecCCceEEEcCCCCEEEEEEccCCCCCCeEEEECCCCCeEEEEEecc
Q 030505 4 SGWDYGVPIINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLTMRQKS 83 (176)
Q Consensus 4 ~~~~~~~~~~~vv~~~~~~~~~~~l~vkqk~~s~~~~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~~I~~k~ 83 (176)
|.+.+.++|++||+++||++++++|+||||++++++++|+|+|++|+++|+|+++.++++.+++|+|++|++|++|++|.
T Consensus 16 ~~~~~~~~~~~vv~~~~~~~~~~~l~vkqk~~~~~~~~f~V~D~~G~~vf~V~~~~~~~~~~~~l~D~~G~~l~~i~rk~ 95 (217)
T 1zxu_A 16 SGAPTPQAGGVVVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGTPVVTLREKM 95 (217)
T ss_dssp --------CCCSSCGGGBCSSCEEEEEECC-----CCCEEEEETTSCEEEEEECSSTTCCSEEEEECTTSCEEEEEEC--
T ss_pred CCCCCCCCcEEEECccccCCCCcEEEEEEEEeEeeCCCEEEEeCCCCEEEEEEccccCCCCEEEEECCCCCEEEEEEccc
Confidence 44556667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccEEEEEeCCCCCCCCCeEEEEEcCCCcccccEEEEEccCCccCCCCCCcEEEEeeeCCCceEEEEC--CEEEEEEE
Q 030505 84 FKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRAPDFYVTGSFTSLSFKVYRG--KTVLCQVV 161 (176)
Q Consensus 84 ~s~~~~~~i~~~~~~~~~~~~l~tv~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~i~G~~~~~~f~I~~~--~~~VA~i~ 161 (176)
++++++|+++++++.+. ++++|+||+++...++.+++|+..+.. ++..++|+|+|+|++++|+|+++ |++||+|+
T Consensus 96 ~~~~~~~~v~~~~~~~~-~~~i~~vrk~~~~~~~~~~~V~~~~~~--~~~~~~~~I~G~~~~~~f~I~~~~~~~~Va~I~ 172 (217)
T 1zxu_A 96 VSMHDRWQVFRGGSTDQ-RDLLYTVKRSSMLQLKTKLDVFLGHNK--DEKRCDFRVKGSWLERSCVVYAGESDAIVAQMH 172 (217)
T ss_dssp ----CEEEEEETTCCCG-GGEEEEEEC-------CCEEEEETTCC--C-CCCSEEEESCTTTTCCEEEETTTCCEEEEEE
T ss_pred cccCcEEEEEcCCCCCC-CcEEEEEEEeccccCCCeEEEEECCCC--CCCceEEEEEEeEeCCEEEEEECCCCEEEEEEE
Confidence 99999999999886432 468999999753347888999987643 22236899999999999999999 79999999
Q ss_pred --eccc------ceEEEeecCC
Q 030505 162 --VPWA------VAFTTSNSPG 175 (176)
Q Consensus 162 --~~~~------dty~~~~~~~ 175 (176)
++++ |+|.+.+.||
T Consensus 173 kk~~~~~~~~~~D~y~l~V~p~ 194 (217)
T 1zxu_A 173 RKHTVQSVFLGKDNFSVTVYPN 194 (217)
T ss_dssp EC--------CBCSEEEEECTT
T ss_pred eeeeccccccCCcEEEEEECCC
Confidence 5555 9999999997
No 2
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=98.41 E-value=1.3e-06 Score=68.87 Aligned_cols=99 Identities=16% Similarity=0.250 Sum_probs=68.1
Q ss_pred CCcceEEEEEEEeeeecCCceEEEcCCCCEEEEEEccCCCCCCeEEEECCCCC----eEEEEEecc-cccccEEEEEeCC
Q 030505 22 VPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGI----PLLTMRQKS-FKWRKEWTVHPGE 96 (176)
Q Consensus 22 ~~~~~~l~vkqk~~s~~~~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~----~L~~I~~k~-~s~~~~~~i~~~~ 96 (176)
......|+++.+.+++++ .+.|+|.+|+++++++.+.++++.++.++++++. +|++|+++. +++++.|+|+.++
T Consensus 59 ~~G~~vf~V~~~~~~~~~-~~~l~D~~G~~l~~i~rk~~~~~~~~~v~~~~~~~~~~~i~~vrk~~~~~~~~~~~V~~~~ 137 (217)
T 1zxu_A 59 VNGNLLFKVKEPVFGLHD-KRVLLDGSGTPVVTLREKMVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLGH 137 (217)
T ss_dssp TTSCEEEEEECSSTTCCS-EEEEECTTSCEEEEEEC------CEEEEEETTCCCGGGEEEEEEC-------CCEEEEETT
T ss_pred CCCCEEEEEEccccCCCC-EEEEECCCCCEEEEEEccccccCcEEEEEcCCCCCCCcEEEEEEEeccccCCCeEEEEECC
Confidence 447789999999888888 9999999999999999999999999999998765 799999983 4589999999976
Q ss_pred CCCCCCCeEEEEEcCCCcccccEEEEEcc
Q 030505 97 SSEDNNDILFRVEQPSPLHIKTKLEVFLP 125 (176)
Q Consensus 97 ~~~~~~~~l~tv~~~~~~~~k~~~~v~~~ 125 (176)
.+.. +...++|+-. + ....++|+..
T Consensus 138 ~~~~-~~~~~~I~G~-~--~~~~f~I~~~ 162 (217)
T 1zxu_A 138 NKDE-KRCDFRVKGS-W--LERSCVVYAG 162 (217)
T ss_dssp CCC--CCCSEEEESC-T--TTTCCEEEET
T ss_pred CCCC-CceEEEEEEe-E--eCCEEEEEEC
Confidence 4321 3456677642 2 2445666654
No 3
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A
Probab=72.96 E-value=32 Score=27.03 Aligned_cols=81 Identities=10% Similarity=0.181 Sum_probs=43.9
Q ss_pred EEEEEecc--c--ccccEEEEEeCCCCCCCCCeEEEEEcCCCcccccEEEEEccCCccCCCCCCcE--EEEeeeCCCceE
Q 030505 76 LLTMRQKS--F--KWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRAPDF--YVTGSFTSLSFK 149 (176)
Q Consensus 76 L~~I~~k~--~--s~~~~~~i~~~~~~~~~~~~l~tv~~~~~~~~k~~~~v~~~~~~~~~~~~~~~--~i~G~~~~~~f~ 149 (176)
-+.|+|.. + .+.++|.++..++. +..|...||..-. -..+.-|.+..... .+....+ +|+.|+++..|+
T Consensus 16 qC~I~R~k~g~~~~~yp~y~l~~~~~~---~~fLlaark~~~~-~~s~YiIS~d~~dl-sr~s~~yvGKLrsNf~Gt~F~ 90 (246)
T 3c5n_A 16 RCRLTRDKKGMDRGMYPSYFLHLDTEK---KVFLLAGRKRKRS-KTANYLISIDPTNL-SRGGENFIGKLRSNLLGNRFT 90 (246)
T ss_dssp EEEEEECC------CCCEEEEEESSSS---CCEEEEEEECTTC-SSCEEEEESCTTC-------CEEEEEEECSSSSEEE
T ss_pred EEEEEEeCCCCCCCCceEEEEEEeCCC---cEEEEeeeeccCC-CCceEEEEeCcccc-ccCCceEEEEEEEccCCCEEE
Confidence 45566532 2 24578888876431 2345555543222 13445455433222 1111222 367899999999
Q ss_pred EEECC---------------EEEEEEE
Q 030505 150 VYRGK---------------TVLCQVV 161 (176)
Q Consensus 150 I~~~~---------------~~VA~i~ 161 (176)
|+|+| +.+|.|.
T Consensus 91 iyD~g~~p~~~~s~~~~~~r~el~~v~ 117 (246)
T 3c5n_A 91 VFDNGQNPQRGYSTNVASLRQELAAVI 117 (246)
T ss_dssp EECSCBCGGGCTTSCGGGBCCEEEEEE
T ss_pred EECCCCCcccccCcccccccEEEEEEE
Confidence 99885 7899998
No 4
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*
Probab=64.83 E-value=52 Score=26.30 Aligned_cols=85 Identities=9% Similarity=0.163 Sum_probs=47.5
Q ss_pred CCCeEEEEEecc--c--ccccEEEEEeCCCCCCCCCeEEEEEcCCCcccccEEEEEccCCccCCCCCCcE--EEEeeeCC
Q 030505 72 AGIPLLTMRQKS--F--KWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRAPDF--YVTGSFTS 145 (176)
Q Consensus 72 ~G~~L~~I~~k~--~--s~~~~~~i~~~~~~~~~~~~l~tv~~~~~~~~k~~~~v~~~~~~~~~~~~~~~--~i~G~~~~ 145 (176)
++..-+.|+|.. + ++.++|.+|..++ . +..|...||..-. ...++-|.+..... .+....| +|+.|+++
T Consensus 36 ~~~iqC~I~R~k~g~~~g~yp~y~L~l~~~--~-~~fLLaarK~k~~-~ts~YiIS~d~~dl-sr~s~~yvGKLrSNflG 110 (276)
T 2fim_A 36 GRTVRCRLTRDKKGMDRGMYPSYFLHLDTE--K-KVFLLAGRKRKRS-KTANYLISIDPTNL-SRGGENFIGKLRSNLLG 110 (276)
T ss_dssp TCCEEEEEEEEC-------CCEEEEEECSS--S-CEEEEEEEECTTC-SSCEEEEESCTTC-------CEEEEEEECSSS
T ss_pred CCeEEEEEEEeCCCCCCCCceEEEEEEeCC--C-CEEEEEEEeccCC-CCceEEEEecchhc-ccCCceEEEEEEEccCC
Confidence 344556776532 2 3568899888643 1 3455555553322 23455555433222 1111233 36889999
Q ss_pred CceEEEECC---------------EEEEEEE
Q 030505 146 LSFKVYRGK---------------TVLCQVV 161 (176)
Q Consensus 146 ~~f~I~~~~---------------~~VA~i~ 161 (176)
..|+|||+| +.+|.|.
T Consensus 111 tkF~iyD~G~~p~~~~s~~~~~~r~el~~V~ 141 (276)
T 2fim_A 111 NRFTVFDNGQNPQRGYSTNVASLRQELAAVI 141 (276)
T ss_dssp SEEEEECSSBCGGGCTTSCGGGBCCEEEEEE
T ss_pred CEEEEECCCCCcccccCcccccccEEEEEEE
Confidence 999999885 7888888
No 5
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=59.70 E-value=5.6 Score=19.88 Aligned_cols=14 Identities=14% Similarity=0.434 Sum_probs=10.9
Q ss_pred eEEEcCCCCEEEEE
Q 030505 42 YDVFDISGNLLLQV 55 (176)
Q Consensus 42 f~V~D~~G~~v~~V 55 (176)
-.|||.+|+.+..+
T Consensus 7 s~IYD~~g~~i~~l 20 (26)
T 2v2f_A 7 SKIYDNKNQLIADL 20 (26)
T ss_pred CEEEeCCCCEeeec
Confidence 37888888888776
No 6
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=57.86 E-value=19 Score=24.13 Aligned_cols=9 Identities=11% Similarity=0.486 Sum_probs=5.1
Q ss_pred cCCceEEEc
Q 030505 38 SNAHYDVFD 46 (176)
Q Consensus 38 ~~~~f~V~D 46 (176)
.|+.+.+|+
T Consensus 27 ~DgNLvly~ 35 (105)
T 4h3o_A 27 DDCNLVLYD 35 (105)
T ss_dssp TTSCEEEEE
T ss_pred CCCeEEEEE
Confidence 444666665
No 7
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=47.20 E-value=23 Score=22.93 Aligned_cols=34 Identities=12% Similarity=0.086 Sum_probs=24.7
Q ss_pred EcCC-CCEEEEEEccCCCCCCeEEEECCCCCe-EEEE
Q 030505 45 FDIS-GNLLLQVDGSLWKFQKKRVMRDPAGIP-LLTM 79 (176)
Q Consensus 45 ~D~~-G~~v~~V~g~~~s~~~~~~l~D~~G~~-L~~I 79 (176)
+|.+ |.....++++ |+.++.+.|+-+.|.. -++|
T Consensus 15 ~~~~~g~~~ie~rN~-f~~GD~iEi~~P~g~~~~~~v 50 (89)
T 4he6_A 15 YDPETGIATVQQRNH-FRPGDEVEFFGPEIENFTQVI 50 (89)
T ss_dssp EETTTTEEEEEESSC-BCTTCEEEEESTTSCCEEEEC
T ss_pred EeCCCCEEEEEEcCC-cCCCCEEEEEcCCCCcEEEEe
Confidence 3454 7677777777 7789999999999943 3444
No 8
>2vnl_A Bifunctional tail protein, PIIGCN4; chimera, hydrolase, late protein, viral protein, phage P22 tailspike protein, mutant Y108WDEL; 1.80A {Enterobacteria phage P22} PDB: 2vky_B
Probab=38.30 E-value=66 Score=23.39 Aligned_cols=68 Identities=15% Similarity=0.030 Sum_probs=38.7
Q ss_pred CCCCCCCC--eeeEEcccccCCcceEEEEEEEeeeecCCceEEEcCCCCEEEEEEccCCCCCCeEEEECCCCCeEEEEEe
Q 030505 4 SGWDYGVP--IINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLTMRQ 81 (176)
Q Consensus 4 ~~~~~~~~--~~~vv~~~~~~~~~~~l~vkqk~~s~~~~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~~I~~ 81 (176)
.|-|+.+| .++| |..++.....-..+-..+..++|-| .+|+++-.+... +....++|..|..++.|-.
T Consensus 35 ~dtDp~~~~Nqi~v----y~~n~~g~~~qv~qPivin~ag~fv--~ng~l~~~vt~~----ghsmavYd~~Gaq~f~iP~ 104 (151)
T 2vnl_A 35 IDTDPVNPANQIPV----YIENEDGSHVQITQPLIINAAGKIV--YNGQLVKIVTVQ----GHSMAIYDANGSQVDYIAN 104 (151)
T ss_dssp TTSCTTSGGGBCCE----EEECTTSCEEEECSSEEECTTSCEE--ETTEECCEECCS----SCEEEEECTTSCEEEEESC
T ss_pred CCCCCCCcccccce----EEecCCCceeeeecceeeecCCcee--eCCEEEEEeccC----CCcceEEecCCCceeeecc
Confidence 35566666 4443 4444544444444455666556666 356664444322 4567788888887777643
No 9
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*
Probab=36.56 E-value=32 Score=24.91 Aligned_cols=53 Identities=19% Similarity=0.179 Sum_probs=16.9
Q ss_pred CceEEEcCCCCEEEEEEccCCCC-------CCeEEEECCCCCeEEEEEecc-cccccEEEE
Q 030505 40 AHYDVFDISGNLLLQVDGSLWKF-------QKKRVMRDPAGIPLLTMRQKS-FKWRKEWTV 92 (176)
Q Consensus 40 ~~f~V~D~~G~~v~~V~g~~~s~-------~~~~~l~D~~G~~L~~I~~k~-~s~~~~~~i 92 (176)
+-+.|+|++|+++..+....... .-...|++.+|+.|+.-+... ..+...|.+
T Consensus 4 E~~~v~d~~~~~~g~~~r~~~~~~~~~~~~~v~~~i~~~~g~vLl~~R~~~~~~~~g~w~~ 64 (190)
T 1hzt_A 4 EHVILLNAQGVPTGTLEKYAAHTADTRLHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTN 64 (190)
T ss_dssp ---------------------------CEECEEEEEECTTCCEEEEEECTTCSSSTTCEEE
T ss_pred eEEEEECCCCCEeeeEEHhhhcccCCceEEEEEEEEEcCCCEEEEEEeCCCCCCCCCcccC
Confidence 36789999999998776654331 124467787887666433222 234677887
No 10
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A*
Probab=33.84 E-value=1e+02 Score=20.32 Aligned_cols=38 Identities=5% Similarity=0.051 Sum_probs=18.2
Q ss_pred cCCceEEEcCCCCEEEEEEccCCCCCCeEEEECCCCCeEE
Q 030505 38 SNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLL 77 (176)
Q Consensus 38 ~~~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~ 77 (176)
.++.+.++|. + .++.+.+...........++.+|+.++
T Consensus 27 ~dGnLvly~~-~-~~vW~snt~~~~~~~~l~l~~dGNLvl 64 (109)
T 3dzw_A 27 EDCNLVLYDV-D-KPIWATNTGGLDRRCHLSMQSDGNLVV 64 (109)
T ss_dssp TTSCEEEEET-T-EEEEECCCTTSSSSCEEEECTTSCEEE
T ss_pred CCCcEEEEeC-C-EEEEECCcccCCCCEEEEEeCCCCEEE
Confidence 5567778776 3 455554442211122333444555444
No 11
>3c12_A FLGD, flagellar protein; HOOK capping, IG-like domain, FN-III domain, tudor-like domain, flagellar biogenesis, flagellum; 2.51A {Xanthomonas campestris PV}
Probab=30.34 E-value=21 Score=25.17 Aligned_cols=16 Identities=13% Similarity=0.152 Sum_probs=9.5
Q ss_pred eEEEECCCCCeEEEEE
Q 030505 65 KRVMRDPAGIPLLTMR 80 (176)
Q Consensus 65 ~~~l~D~~G~~L~~I~ 80 (176)
.+.|+|++|+.+-+|.
T Consensus 42 ~v~I~d~~G~~V~t~~ 57 (138)
T 3c12_A 42 NFEITDANGTFVKQLS 57 (138)
T ss_dssp EEEEECSSCCEEEEEE
T ss_pred EEEEEeCCCCEEEEEE
Confidence 4556666666665554
No 12
>3r0e_B Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara}
Probab=30.16 E-value=1.2e+02 Score=20.07 Aligned_cols=10 Identities=0% Similarity=0.132 Sum_probs=5.3
Q ss_pred cCCceEEEcC
Q 030505 38 SNAHYDVFDI 47 (176)
Q Consensus 38 ~~~~f~V~D~ 47 (176)
.++.+.++|.
T Consensus 32 ~dGnLvl~~~ 41 (110)
T 3r0e_B 32 GDCNLVLYGG 41 (110)
T ss_dssp TTSCEEEECS
T ss_pred CCCeEEEECC
Confidence 3445666654
No 13
>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*
Probab=29.80 E-value=86 Score=23.91 Aligned_cols=56 Identities=11% Similarity=0.057 Sum_probs=35.4
Q ss_pred CCceEEEcCCCCEEEEEEccCCC---------CCC--eEEEECCCCCeEEEEEecc-cccccEEEEEe
Q 030505 39 NAHYDVFDISGNLLLQVDGSLWK---------FQK--KRVMRDPAGIPLLTMRQKS-FKWRKEWTVHP 94 (176)
Q Consensus 39 ~~~f~V~D~~G~~v~~V~g~~~s---------~~~--~~~l~D~~G~~L~~I~~k~-~s~~~~~~i~~ 94 (176)
++-+.|+|++|+++..+..+... ++. .+.|.|.+|+.|+.-|... ..+...|++-.
T Consensus 26 ~E~~~lvd~~~~~~G~~~r~~~h~~~~~~~g~~h~av~v~v~~~~g~lLLq~R~~~k~~~pg~W~~p~ 93 (235)
T 2dho_A 26 AEMCILIDENDNKIGAETKKNCHLNENIEKGLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTC 93 (235)
T ss_dssp CCEEEEECTTCCEEEEEEHHHHTBHHHHTTTCCEEEEEEEEECTTCCEEEEEECTTCSSSTTCEESSE
T ss_pred CcEEEEEcCCCCEEEEEEhHHhccccccCCCceEEEEEEEEEcCCCEEEEEEecCcCCCCCCcEEecc
Confidence 44799999999999998654211 222 3356788898776433221 23456788554
No 14
>2csp_A RIM-BP2, RIM binding protein 2; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=29.42 E-value=32 Score=24.43 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=21.2
Q ss_pred ceEEEECCEEEEEEEecccceEEEee
Q 030505 147 SFKVYRGKTVLCQVVVPWAVAFTTSN 172 (176)
Q Consensus 147 ~f~I~~~~~~VA~i~~~~~dty~~~~ 172 (176)
.|.||.+|+.||+|....+|.-.|+.
T Consensus 57 GY~VYadGqkV~eV~~PTad~~lv~l 82 (130)
T 2csp_A 57 GYGVYAKGQRVAEVIFPTADSTAVEL 82 (130)
T ss_dssp EEEEESSSSEEEEECCTTCSEEEEES
T ss_pred EEEEEeCCcEEEEecCCCCCcEEEEH
Confidence 48999999999999977777666654
No 15
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=29.14 E-value=1.2e+02 Score=20.16 Aligned_cols=41 Identities=12% Similarity=-0.049 Sum_probs=20.6
Q ss_pred cCCceEEEcCCCCEEEEEEccCCCCCCeEEEECCCCCeEEE
Q 030505 38 SNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLT 78 (176)
Q Consensus 38 ~~~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~~ 78 (176)
.|+.+.++|.+...++...+...........++.+|+.++.
T Consensus 32 ~dGNLvL~~~~~~~~vWssnt~~~~~~~~l~l~~dGNLVl~ 72 (113)
T 3mez_B 32 DDCNLVLTKGSKTNIVWESGTSGRGQHCFMRLGHSGELDIT 72 (113)
T ss_dssp TTSCEEEEETTTTEEEEECCCTTSCSSCEEEECTTSCEEEE
T ss_pred CCCEEEEEECCCCEEEEECCcccCCcCEEEEEeCCCcEEEE
Confidence 56688888874334455544322112233334446655543
No 16
>1xg0_B Phycoerythrin alpha-2 chain; light-harvesting protein, cryptophyte, photosynthesis; HET: LYZ DBV PEB; 0.97A {Rhodomonas SP} SCOP: d.184.1.1 PDB: 1qgw_B* 1xf6_B*
Probab=28.53 E-value=14 Score=23.28 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=18.3
Q ss_pred CCCeeeEEcccccCCcceEEEE
Q 030505 9 GVPIINIVGENFCVPYTMEMLV 30 (176)
Q Consensus 9 ~~~~~~vv~~~~~~~~~~~l~v 30 (176)
-+|.|.|.+++.|+..+..|.-
T Consensus 7 ~APvItiFDhRGC~r~~kEYtG 28 (67)
T 1xg0_B 7 KAPVITIFDHRGCSRAPKEYTG 28 (67)
T ss_dssp EEEEEEEEECTTCSSCCCSCCS
T ss_pred CCCeEEEecccccCCccccccC
Confidence 4789999999999988877654
No 17
>1xg0_A Phycoerythrin alpha-3 chain; light-harvesting protein, cryptophyte, photosynthesis; HET: LYZ DBV PEB; 0.97A {Rhodomonas SP} SCOP: d.184.1.1 PDB: 1qgw_A* 1xf6_A*
Probab=26.87 E-value=16 Score=23.49 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=18.4
Q ss_pred CCCeeeEEcccccCCcceEEEE
Q 030505 9 GVPIINIVGENFCVPYTMEMLV 30 (176)
Q Consensus 9 ~~~~~~vv~~~~~~~~~~~l~v 30 (176)
-+|.|.|.+++-|++.+..|+-
T Consensus 7 ~APvITIFDhRGC~r~~kEYtG 28 (76)
T 1xg0_A 7 KAPQITIFDHRGCSRAPKESTG 28 (76)
T ss_dssp EEEEEEEEECTTCSSCCCCCCS
T ss_pred CCCeEEEecccccCCccccccC
Confidence 4789999999999988877654
No 18
>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2
Probab=25.74 E-value=1.1e+02 Score=21.43 Aligned_cols=54 Identities=15% Similarity=0.102 Sum_probs=34.0
Q ss_pred cCCceEEEcCCCCEEEEEEccCC------CCCCeEEEECCCCCeEEEEEeccc--ccccEEEE
Q 030505 38 SNAHYDVFDISGNLLLQVDGSLW------KFQKKRVMRDPAGIPLLTMRQKSF--KWRKEWTV 92 (176)
Q Consensus 38 ~~~~f~V~D~~G~~v~~V~g~~~------s~~~~~~l~D~~G~~L~~I~~k~~--s~~~~~~i 92 (176)
.+.-+.|+|.+|+.+.....+.. ...-...+.|.+|+.|+ .+|... .+...|.+
T Consensus 8 ~~E~~~i~d~~~~~~g~~~r~~~~~~~~~~~~~~v~i~~~~~~vLl-~~R~~~~~~~~g~w~l 69 (180)
T 2fkb_A 8 STEWVDIVNEENEVIAQASREQMRAQCLRHRATYIVVHDGMGKILV-QRRTETKDFLPGMLDA 69 (180)
T ss_dssp CCCEEEEECTTSCEEEEEEHHHHHHHTCCEEEEEEEEECSSSCEEE-EEECSSCSSSTTCEES
T ss_pred CCeeEEEECCCCCEeeEEEHHHhhccCceeeEEEEEEECCCCEEEE-EECCCCCccCCCcEEe
Confidence 34478999999999998875421 11224466788898776 444322 12456876
No 19
>2h1z_A Hybrid atracotoxin; beta-hairpin, cystine knot; NMR {Hadronyche versuta}
Probab=24.94 E-value=55 Score=18.10 Aligned_cols=13 Identities=8% Similarity=0.105 Sum_probs=10.1
Q ss_pred EcCCCCEEEEEEc
Q 030505 45 FDISGNLLLQVDG 57 (176)
Q Consensus 45 ~D~~G~~v~~V~g 57 (176)
.+++|+.|++.++
T Consensus 27 ~NeNGntV~rC~~ 39 (39)
T 2h1z_A 27 RNENGHTVYYCRA 39 (39)
T ss_dssp ECSSCCEEEEEEC
T ss_pred eccCCCEEEeecC
Confidence 4688999998763
No 20
>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}
Probab=24.88 E-value=93 Score=23.97 Aligned_cols=56 Identities=11% Similarity=0.071 Sum_probs=34.8
Q ss_pred CCceEEEcCCCCEEEEEEccCCC---------CCC--eEEEECCCCCeEEEEEecc-cccccEEEEEe
Q 030505 39 NAHYDVFDISGNLLLQVDGSLWK---------FQK--KRVMRDPAGIPLLTMRQKS-FKWRKEWTVHP 94 (176)
Q Consensus 39 ~~~f~V~D~~G~~v~~V~g~~~s---------~~~--~~~l~D~~G~~L~~I~~k~-~s~~~~~~i~~ 94 (176)
++-+.|+|++|+++..+...... ++. .+.|.|.+|+.|+.-|... ..+...|++-.
T Consensus 37 ~E~~~lvd~~~~~iG~~~r~~~h~~~~~~~g~~h~av~v~v~~~~g~lLLqrRs~~K~~~pG~W~~p~ 104 (246)
T 2pny_A 37 EEMLIVVDENDKVIGADTKRNCHLNENIEKGLLHRAFSVVLFNTKNRILIQQRSDTKVTFPGYFTDSC 104 (246)
T ss_dssp TCEEEEECTTCCEEEEEEHHHHTBHHHHTTTCCEEEEEEEEECTTCCEEEEEECTTCSSSTTCBCCSE
T ss_pred cceEEEEcCCCCEEEEEEhHHhccccccCCCcEEEEEEEEEEeCCCEEEEEEecCCCCCCCCceEecc
Confidence 34799999999999998654211 222 3357788898766433221 23456787544
No 21
>3oe3_A Putative periplasmic protein; beta barrel, hydrolase inhibitor; 1.51A {Salmonella enterica}
Probab=23.85 E-value=1.7e+02 Score=19.58 Aligned_cols=46 Identities=17% Similarity=0.259 Sum_probs=29.3
Q ss_pred eEEEEEEEeeeecCCceEEEcCCCCEEEEEEccCCCCCCeEEEECCCCCeEEE
Q 030505 26 MEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLT 78 (176)
Q Consensus 26 ~~l~vkqk~~s~~~~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~~ 78 (176)
..+.+++ ..+-|+-.|.--|.++..++.-+|. +..|.|..|++++.
T Consensus 39 ~~i~l~q-v~SASGarY~~~~~~~~y~lwtKG~------eA~L~~~~g~~i~~ 84 (98)
T 3oe3_A 39 EMIPMRL-MKMASGANYEAIDKNYTYKLYTKGK------TAELVEGDDKPVLS 84 (98)
T ss_dssp EEEEEEE-EEC--CEEEEESSTTCCCEEEEETT------EEEEEETTTEEEEE
T ss_pred cEEEEEE-EEecCcceEEccCCCCcEEEEEeCC------cEEEEECCCCEEEc
Confidence 3444444 4555665676666677777777664 77788888887763
No 22
>2z4i_A Copper homeostasis protein CUTF; outer memblane lipoprotein, beta barrel, OB-fold, 3D domain swapping, signaling protein activator; HET: P6G; 2.60A {Escherichia coli} PDB: 2z4h_A*
Probab=23.01 E-value=1.7e+02 Score=22.73 Aligned_cols=12 Identities=33% Similarity=0.434 Sum_probs=7.5
Q ss_pred eEEEECCCCCeE
Q 030505 65 KRVMRDPAGIPL 76 (176)
Q Consensus 65 ~~~l~D~~G~~L 76 (176)
.+.++|.+|+++
T Consensus 96 ~L~mLD~~G~~i 107 (233)
T 2z4i_A 96 ALEMLDREGNPI 107 (233)
T ss_dssp EEEEECTTSCBC
T ss_pred EEEEECCCCCcC
Confidence 466666666665
No 23
>3r0e_A Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara}
Probab=22.70 E-value=1.7e+02 Score=19.26 Aligned_cols=9 Identities=11% Similarity=0.043 Sum_probs=3.8
Q ss_pred ECCCCCeEE
Q 030505 69 RDPAGIPLL 77 (176)
Q Consensus 69 ~D~~G~~L~ 77 (176)
++.+|+.++
T Consensus 55 l~~dGnLvl 63 (109)
T 3r0e_A 55 LTDYGELVI 63 (109)
T ss_dssp ECTTSCEEE
T ss_pred EcCCCeEEE
Confidence 344444433
No 24
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=21.83 E-value=1.2e+02 Score=20.08 Aligned_cols=38 Identities=5% Similarity=-0.018 Sum_probs=18.5
Q ss_pred cCCceEEEcCCCCEEEEEEccCCCCCCeEEEECCCCCeEEE
Q 030505 38 SNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLT 78 (176)
Q Consensus 38 ~~~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~~ 78 (176)
.++.+.++|.++ +...+...........+..+|+.++.
T Consensus 28 ~dGnLvl~~~~~---vW~snt~~~~~~~~l~l~~dGNLVl~ 65 (111)
T 3mez_A 28 GDCNLVLYNEAG---GFQSNTHGRGVDCTLRLNNRGQLEIH 65 (111)
T ss_dssp TTSCEEEECSSC---CEECCCTTSCSSCEEEECTTSCEEEE
T ss_pred cCCeEEEECCCC---EEECCcccCCcCEEEEEcCCCcEEEE
Confidence 455777777665 33333322112233344556665543
No 25
>2ln7_A LPXTG-SITE transpeptidase family protein; sortase, sortase family D, enzyme, protein binding; NMR {Bacillus anthracis}
Probab=21.55 E-value=18 Score=25.84 Aligned_cols=18 Identities=6% Similarity=0.012 Sum_probs=8.3
Q ss_pred CCeEEEECCCCCeEEEEE
Q 030505 63 QKKRVMRDPAGIPLLTMR 80 (176)
Q Consensus 63 ~~~~~l~D~~G~~L~~I~ 80 (176)
++++.|.+..+...+++.
T Consensus 79 GD~i~v~~~~~~~~Y~V~ 96 (147)
T 2ln7_A 79 KDTLVLEYDNKTYTYEIQ 96 (147)
T ss_dssp TCEEEEEETTEEEEEEEE
T ss_pred CCEEEEEECCcEEEEEEE
Confidence 445555544444444443
No 26
>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A
Probab=20.52 E-value=1.1e+02 Score=21.31 Aligned_cols=52 Identities=10% Similarity=0.070 Sum_probs=30.9
Q ss_pred CCceEEEcCCCCEEEEEEccCC------CCCCeEEEECCCCCeEEEEEecc-c-ccccEEE
Q 030505 39 NAHYDVFDISGNLLLQVDGSLW------KFQKKRVMRDPAGIPLLTMRQKS-F-KWRKEWT 91 (176)
Q Consensus 39 ~~~f~V~D~~G~~v~~V~g~~~------s~~~~~~l~D~~G~~L~~I~~k~-~-s~~~~~~ 91 (176)
++-+.|+|.+|+++..+..... ...-...|++.+|+.|+ ++|.. . .+...|.
T Consensus 6 ~E~~~~~d~~~~~~g~~~r~~~~l~~~~~~~v~v~i~~~~~~vLl-~~r~~~~~~~~g~w~ 65 (171)
T 1q27_A 6 DERLDLVNERDEVVGQILRTDPALRWERVRVVNAFLRNSQGQLWI-PRRSPSKSLFPNALD 65 (171)
T ss_dssp SSEEEEESSSSCEEEEEESSCTTSCTTSCEEEEEEEEETTTEEEE-CCSCCSSSCCCCSCC
T ss_pred ceeeeeecCCCCEeceEEhhhhccccccceEEEEEEECCCCeEEE-EEecCCCCCCCCccc
Confidence 3468999999999998776543 11113446777775544 44422 1 1345575
No 27
>3my2_A Lipopolysaccharide export system protein LPTC; lipopolysaccharide export pathway, structural genomics scottish structural proteomics facility; 2.20A {Escherichia coli} PDB: 4b54_A
Probab=20.38 E-value=93 Score=22.60 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=20.7
Q ss_pred EEEcCCCCEEEEEEccCCC----------CCCeEEEECCCCCeEEEEEec
Q 030505 43 DVFDISGNLLLQVDGSLWK----------FQKKRVMRDPAGIPLLTMRQK 82 (176)
Q Consensus 43 ~V~D~~G~~v~~V~g~~~s----------~~~~~~l~D~~G~~L~~I~~k 82 (176)
..+|++|++.|++.+.-+. -...+.++|..|.+..+|+-+
T Consensus 34 ~~~d~~G~l~~~l~A~~~~hy~~~~~t~~~~P~~~~y~~~~~~~w~i~A~ 83 (175)
T 3my2_A 34 LVYNPEGALSYRLIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKAD 83 (175)
T ss_dssp ---------CEEEECSSEEEETTTTEEEEESCEEEEECTTCCEEEEEECS
T ss_pred EEECCCCCEEEEEEeeeEEEecCCCCEEEeccEEEEECCCCceeEEEEeC
Confidence 5789999999999987421 145667777777677777554
Done!