BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030508
         (176 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1Q6U|A Chain A, Crystal Structure Of Fkpa From Escherichia Coli
          Length = 245

 Score = 30.0 bits (66), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 8/60 (13%)

Query: 99  RMQKENSAPEGFPNFIREGF--EVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVFL 156
           +M+K+ +  E      RE F  E  V TS       +GL+Y+  E GKG+ PKD   V +
Sbjct: 91  KMEKDAADNEAKGKEYREKFAKEKGVKTSS------TGLVYQVVEAGKGEAPKDSDTVVV 144


>pdb|1Q6H|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
           Escherichia Coli
 pdb|1Q6H|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
           Escherichia Coli
 pdb|1Q6I|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
           Escherichia Coli, In Complex With Immunosuppressant
           Fk506
 pdb|1Q6I|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
           Escherichia Coli, In Complex With Immunosuppressant
           Fk506
          Length = 224

 Score = 29.6 bits (65), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 11/24 (45%), Positives = 16/24 (66%)

Query: 133 SGLIYRDFEVGKGDCPKDGQQVFL 156
           +GL+Y+  E GKG+ PKD   V +
Sbjct: 121 TGLVYQVVEAGKGEAPKDSDTVVV 144


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.136    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,875,613
Number of Sequences: 62578
Number of extensions: 197934
Number of successful extensions: 311
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 307
Number of HSP's gapped (non-prelim): 5
length of query: 176
length of database: 14,973,337
effective HSP length: 92
effective length of query: 84
effective length of database: 9,216,161
effective search space: 774157524
effective search space used: 774157524
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)