BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030508
(176 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0WRJ7|FK202_ARATH Peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic
OS=Arabidopsis thaliana GN=FKBP20-2 PE=1 SV=1
Length = 242
Score = 128 bits (322), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/116 (63%), Positives = 89/116 (76%), Gaps = 8/116 (6%)
Query: 41 CSSSHNLKDNGFHCKVKLKRRVVPFLLFSSG--LFPTLSASGKTKSKNPYDEKRLLEQNK 98
CS S KD C L RR + ++L +S L P LS+S KTKSK+PYDE+RLLEQNK
Sbjct: 32 CSLSEEPKD---QC---LSRRSLVYVLVASPCLLLPALSSSAKTKSKSPYDERRLLEQNK 85
Query: 99 RMQKENSAPEGFPNFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQV 154
R+Q+EN+AP+ FPNF+REGFEVKV+ S+NY K DSGLIYRDF VG+GD PKDGQQV
Sbjct: 86 RIQRENNAPDEFPNFVREGFEVKVLASDNYIKADSGLIYRDFNVGQGDFPKDGQQV 141
>sp|Q7MB17|TRUA_PHOLL tRNA pseudouridine synthase A OS=Photorhabdus luminescens subsp.
laumondii (strain TT01) GN=truA PE=3 SV=2
Length = 264
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 49 DNGFHCKVKLKRRVVPFLLFSSGLFPTLSASGKTKSKNPYDEKRLLEQNKRMQKENS 105
D GFH + R +++F+ P + A+G T P DEKR+ + + + EN
Sbjct: 95 DEGFHARFSATARRYRYIIFNHRYRPAVLANGVTHFHYPLDEKRMHQAAQCILGEND 151
>sp|O22870|FK163_ARATH Peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic
OS=Arabidopsis thaliana GN=FKBP16-3 PE=1 SV=2
Length = 223
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 21/96 (21%)
Query: 59 KRRVVPFLLFSSGLFPTLSASGKTKSKNPYDEKRLLEQNKRMQKENSAPEGFPNFIREGF 118
+R + +L SG S + P D+ RL E + EN
Sbjct: 53 RREAMLLVLGVSGGLSMSSLAAYAAGLPPEDKPRLCEAECEKELEN-------------- 98
Query: 119 EVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQV 154
V +VT+E SGL Y+D +VG+G P G QV
Sbjct: 99 -VPMVTTE------SGLQYKDIKVGRGPSPPVGFQV 127
>sp|P65764|FKBA_ECOL6 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA OS=Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=fkpA
PE=3 SV=1
Length = 270
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 99 RMQKENSAPEGFPNFIREGF--EVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVFL 156
+M+K+ + E RE F E V TS +GL+Y+ E GKG+ PKD V +
Sbjct: 116 KMEKDAADNEAKGKEYREKFAKEKGVKTSS------TGLVYQVVEAGKGEAPKDSDTVVV 169
>sp|P65765|FKBA_ECO57 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA OS=Escherichia
coli O157:H7 GN=fkpA PE=3 SV=1
Length = 270
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 99 RMQKENSAPEGFPNFIREGF--EVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVFL 156
+M+K+ + E RE F E V TS +GL+Y+ E GKG+ PKD V +
Sbjct: 116 KMEKDAADNEAKGKEYREKFAKEKGVKTSS------TGLVYQVVEAGKGEAPKDSDTVVV 169
>sp|P45523|FKBA_ECOLI FKBP-type peptidyl-prolyl cis-trans isomerase FkpA OS=Escherichia
coli (strain K12) GN=fkpA PE=1 SV=1
Length = 270
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 99 RMQKENSAPEGFPNFIREGF--EVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVFL 156
+M+K+ + E RE F E V TS +GL+Y+ E GKG+ PKD V +
Sbjct: 116 KMEKDAADNEAKGKEYREKFAKEKGVKTSS------TGLVYQVVEAGKGEAPKDSDTVVV 169
>sp|B9KDG5|SELA_CAMLR L-seryl-tRNA(Sec) selenium transferase OS=Campylobacter lari
(strain RM2100 / D67 / ATCC BAA-1060) GN=selA PE=3 SV=1
Length = 443
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 63 VPFLLFSSGLFPTLSASGKTKSKNPYDEKRLLEQNKRMQKENSAPEGFPNFIREGFEVKV 122
+P ++ ++G+ L G T + YD ++ + +N +M + NF +GF +V
Sbjct: 177 IPEVMLAAGV--RLKEIGTTNKTHLYDYEKAINENTKMILKTHRS----NFAFKGFFEEV 230
Query: 123 VTSENYTKRDSGLIYRDFEVGKGDCPKDGQQV 154
SE +T I +++G G C K +Q+
Sbjct: 231 SLSEIHTLTKKKKIISYYDLGSGWCEKINKQL 262
>sp|Q7Y1I7|DNM1A_ORYSJ DNA (cytosine-5)-methyltransferase 1A OS=Oryza sativa subsp. japonica
GN=MET1A PE=2 SV=1
Length = 1527
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 129 TKRDSGLIYRDFEVGKGDCPKDGQQVFLLSSLEAISSCS 167
+K++ G D E+G D PKDGQ L++L+ + C
Sbjct: 1064 SKKNKGKQICDIELGGSDKPKDGQSENCLATLDIFAGCG 1102
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,234,755
Number of Sequences: 539616
Number of extensions: 2734528
Number of successful extensions: 5925
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 5919
Number of HSP's gapped (non-prelim): 12
length of query: 176
length of database: 191,569,459
effective HSP length: 110
effective length of query: 66
effective length of database: 132,211,699
effective search space: 8725972134
effective search space used: 8725972134
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)