Query 030508
Match_columns 176
No_of_seqs 117 out of 282
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 14:47:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030508.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030508hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0545 FkpA FKBP-type peptidy 99.6 7.7E-15 1.7E-19 124.0 7.5 53 121-174 89-141 (205)
2 PRK11570 peptidyl-prolyl cis-t 99.3 3.2E-12 6.9E-17 106.3 6.6 50 124-174 93-142 (206)
3 PRK10902 FKBP-type peptidyl-pr 99.2 1E-10 2.2E-15 101.3 8.4 58 116-174 129-186 (269)
4 KOG0544 FKBP-type peptidyl-pro 99.2 4.1E-11 8.8E-16 92.8 5.2 40 134-174 2-42 (108)
5 KOG0552 FKBP-type peptidyl-pro 99.0 2.9E-10 6.2E-15 97.4 5.8 47 128-174 115-161 (226)
6 TIGR03516 ppisom_GldI peptidyl 98.9 2.1E-09 4.6E-14 87.7 6.5 48 126-174 62-111 (177)
7 KOG0549 FKBP-type peptidyl-pro 98.2 1.9E-06 4.1E-11 72.7 5.6 42 132-174 67-110 (188)
8 PF00254 FKBP_C: FKBP-type pep 97.7 5.8E-05 1.3E-09 53.3 4.0 26 147-173 4-29 (94)
9 KOG0543 FKBP-type peptidyl-pro 97.1 0.0011 2.3E-08 61.5 6.4 61 102-172 61-123 (397)
10 PF01346 FKBP_N: Domain amino 85.4 0.48 1E-05 35.4 1.5 17 123-139 108-124 (124)
11 TIGR00115 tig trigger factor. 78.9 1.7 3.7E-05 38.7 2.7 27 145-173 144-170 (408)
12 PRK01490 tig trigger factor; P 74.9 3.2 6.9E-05 37.4 3.3 24 147-172 157-180 (435)
13 PF07172 GRP: Glycine rich pro 61.3 3.9 8.4E-05 31.0 0.8 39 59-108 4-42 (95)
14 PRK13165 cytochrome c-type bio 52.9 30 0.00065 28.8 4.8 11 152-162 89-99 (160)
15 PTZ00414 10 kDa heat shock pro 50.3 40 0.00086 26.0 4.8 33 137-169 47-86 (100)
16 COG0403 GcvP Glycine cleavage 45.4 15 0.00033 35.2 2.2 31 86-119 55-85 (450)
17 COG0544 Tig FKBP-type peptidyl 44.8 22 0.00047 33.5 3.1 23 148-172 158-180 (441)
18 PF11717 Tudor-knot: RNA bindi 38.0 17 0.00038 24.2 1.0 11 152-162 31-41 (55)
19 PF13670 PepSY_2: Peptidase pr 36.5 1.5E+02 0.0033 20.8 6.4 34 115-160 40-74 (83)
20 PRK13150 cytochrome c-type bio 32.3 52 0.0011 27.4 3.2 12 153-165 90-101 (159)
21 PF10877 DUF2671: Protein of u 29.6 71 0.0015 24.2 3.2 12 113-124 40-51 (90)
22 PF14510 ABC_trans_N: ABC-tran 28.5 74 0.0016 22.6 3.1 46 87-154 33-79 (85)
23 COG3019 Predicted metal-bindin 28.0 29 0.00063 28.9 1.0 63 59-131 2-64 (149)
24 PRK14533 groES co-chaperonin G 26.8 71 0.0015 24.0 2.8 32 138-169 39-77 (91)
25 PF10399 UCR_Fe-S_N: Ubiquitin 26.4 10 0.00023 24.9 -1.5 11 56-66 8-18 (41)
26 PF07076 DUF1344: Protein of u 26.3 1.7E+02 0.0038 21.0 4.6 42 128-172 18-59 (61)
27 PF13224 DUF4032: Domain of un 25.9 71 0.0015 26.8 2.9 31 89-134 16-46 (165)
28 PF10907 DUF2749: Protein of u 25.8 71 0.0015 23.4 2.6 15 59-73 2-16 (66)
29 COG3211 PhoX Predicted phospha 24.9 60 0.0013 32.4 2.6 37 115-152 73-109 (616)
30 PF10018 Med4: Vitamin-D-recep 23.8 96 0.0021 25.4 3.3 33 80-112 73-105 (188)
31 PRK13159 cytochrome c-type bio 23.7 1.4E+02 0.0029 24.9 4.1 44 112-165 52-95 (155)
32 PF04083 Abhydro_lipase: Parti 23.5 1.1E+02 0.0023 21.4 3.1 43 115-161 7-52 (63)
33 COG3168 PilP Tfp pilus assembl 22.7 2.8E+02 0.0062 23.6 5.9 80 79-169 53-137 (170)
34 PRK13254 cytochrome c-type bio 21.8 1.8E+02 0.0038 23.7 4.4 12 151-162 81-92 (148)
35 PLN00042 photosystem II oxygen 21.5 1.1E+02 0.0023 27.5 3.4 40 34-80 33-77 (260)
36 PHA02122 hypothetical protein 21.2 1.3E+02 0.0028 21.9 3.1 18 150-169 40-57 (65)
37 PRK00364 groES co-chaperonin G 20.7 1E+02 0.0022 23.0 2.7 25 138-162 39-74 (95)
38 cd00320 cpn10 Chaperonin 10 Kd 20.6 1.1E+02 0.0024 22.7 2.8 31 138-168 38-80 (93)
39 cd04486 YhcR_OBF_like YhcR_OBF 20.2 2.2E+02 0.0047 20.3 4.2 41 117-162 17-57 (78)
No 1
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=7.7e-15 Score=123.96 Aligned_cols=53 Identities=25% Similarity=0.354 Sum_probs=48.0
Q ss_pred eEeecCCcccCCCCceEEEeeeccCCCCCCCCeEEEEEEEEeCCCCceeeeccc
Q 030508 121 KVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVFLLSSLEAISSCSCYDISIR 174 (176)
Q Consensus 121 kvv~~~g~~tt~SGL~YkDik~GtG~~P~~GqtVtVHYtG~L~~dG~vFDSS~~ 174 (176)
+.-...+..+++|||+|+++++|+|+.|++|++|.|||+|+| +||++||||++
T Consensus 89 ~~~k~~~v~~~~sgl~y~~~~~G~G~~~~~~~~V~vhY~G~l-~~G~vFDsS~~ 141 (205)
T COG0545 89 KNAKEKGVKTLPSGLQYKVLKAGDGAAPKKGDTVTVHYTGTL-IDGTVFDSSYD 141 (205)
T ss_pred hhcccCCceECCCCcEEEEEeccCCCCCCCCCEEEEEEEEec-CCCCccccccc
Confidence 333347789999999999999999999999999999999998 89999999975
No 2
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.31 E-value=3.2e-12 Score=106.33 Aligned_cols=50 Identities=22% Similarity=0.347 Sum_probs=47.1
Q ss_pred ecCCcccCCCCceEEEeeeccCCCCCCCCeEEEEEEEEeCCCCceeeeccc
Q 030508 124 TSENYTKRDSGLIYRDFEVGKGDCPKDGQQVFLLSSLEAISSCSCYDISIR 174 (176)
Q Consensus 124 ~~~g~~tt~SGL~YkDik~GtG~~P~~GqtVtVHYtG~L~~dG~vFDSS~~ 174 (176)
+.+++++|+|||+|++++.|+|+.|++|++|.|||+|++ .||++||||++
T Consensus 93 k~~gv~~t~sGl~y~vi~~G~G~~p~~~d~V~v~Y~g~l-~dG~vfdss~~ 142 (206)
T PRK11570 93 KKEGVNSTESGLQFRVLTQGEGAIPARTDRVRVHYTGKL-IDGTVFDSSVA 142 (206)
T ss_pred hcCCcEECCCCcEEEEEeCCCCCCCCCCCEEEEEEEEEE-CCCCEEEeccC
Confidence 447899999999999999999999999999999999999 79999999984
No 3
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.16 E-value=1e-10 Score=101.26 Aligned_cols=58 Identities=21% Similarity=0.326 Sum_probs=51.5
Q ss_pred ccceeeEeecCCcccCCCCceEEEeeeccCCCCCCCCeEEEEEEEEeCCCCceeeeccc
Q 030508 116 EGFEVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVFLLSSLEAISSCSCYDISIR 174 (176)
Q Consensus 116 eg~~vkvv~~~g~~tt~SGL~YkDik~GtG~~P~~GqtVtVHYtG~L~~dG~vFDSS~~ 174 (176)
+.|--+.-..+|+++++|||+|+++++|+|+.|+.|++|.|||+|++ .||++||||+.
T Consensus 129 ~~fl~~~~k~~gv~~t~sGl~y~Vi~~G~G~~p~~gD~V~V~Y~g~l-~dG~vfdss~~ 186 (269)
T PRK10902 129 KKYREKFAKEKGVKTTSTGLLYKVEKEGTGEAPKDSDTVVVNYKGTL-IDGKEFDNSYT 186 (269)
T ss_pred HHHHHHhccCCCcEECCCccEEEEEeCCCCCCCCCCCEEEEEEEEEe-CCCCEeecccc
Confidence 34555555668899999999999999999999999999999999998 79999999974
No 4
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=4.1e-11 Score=92.79 Aligned_cols=40 Identities=25% Similarity=0.282 Sum_probs=36.7
Q ss_pred CceEEEeeeccC-CCCCCCCeEEEEEEEEeCCCCceeeeccc
Q 030508 134 GLIYRDFEVGKG-DCPKDGQQVFLLSSLEAISSCSCYDISIR 174 (176)
Q Consensus 134 GL~YkDik~GtG-~~P~~GqtVtVHYtG~L~~dG~vFDSS~~ 174 (176)
|...+.|..|+| ..|++||+|+|||||+| .||++||||++
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L-~dG~kfDSs~d 42 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTL-QDGKKFDSSRD 42 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEe-cCCcEeecccc
Confidence 567788999999 67999999999999999 99999999976
No 5
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=2.9e-10 Score=97.36 Aligned_cols=47 Identities=23% Similarity=0.335 Sum_probs=43.3
Q ss_pred cccCCCCceEEEeeeccCCCCCCCCeEEEEEEEEeCCCCceeeeccc
Q 030508 128 YTKRDSGLIYRDFEVGKGDCPKDGQQVFLLSSLEAISSCSCYDISIR 174 (176)
Q Consensus 128 ~~tt~SGL~YkDik~GtG~~P~~GqtVtVHYtG~L~~dG~vFDSS~~ 174 (176)
..++++||+|+|+++|+|+.|++|++|.|||+|+|.-+|++||+.+.
T Consensus 115 ~~tl~~Gl~y~D~~vG~G~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~ 161 (226)
T KOG0552|consen 115 SRTLPGGLRYEDLRVGSGPSAKKGKRVSVRYIGKLKGNGKVFDSNFG 161 (226)
T ss_pred ceecCCCcEEEEEEecCCCCCCCCCEEEEEEEEEecCCCeEeecccC
Confidence 36889999999999999999999999999999999449999999864
No 6
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=98.93 E-value=2.1e-09 Score=87.69 Aligned_cols=48 Identities=19% Similarity=0.234 Sum_probs=43.6
Q ss_pred CCcccCCCCceEEEeee--ccCCCCCCCCeEEEEEEEEeCCCCceeeeccc
Q 030508 126 ENYTKRDSGLIYRDFEV--GKGDCPKDGQQVFLLSSLEAISSCSCYDISIR 174 (176)
Q Consensus 126 ~g~~tt~SGL~YkDik~--GtG~~P~~GqtVtVHYtG~L~~dG~vFDSS~~ 174 (176)
.+|.++++||+|+++++ |+|..|+.|++|++||+|++ .||++||||+.
T Consensus 62 ~~~~~t~sGl~Y~v~~~~~g~g~~p~~gd~V~v~Y~~~~-~dG~v~~ss~~ 111 (177)
T TIGR03516 62 VKYETSQNGFWYYYNQKDTGEGTTPEFGDLVTFEYDIRA-LDGDVIYSEEE 111 (177)
T ss_pred CCceECCCccEEEEEEecCCCCCcCCCCCEEEEEEEEEe-CCCCEEEeCCC
Confidence 34899999999999977 77888999999999999999 89999999974
No 7
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=1.9e-06 Score=72.68 Aligned_cols=42 Identities=14% Similarity=0.096 Sum_probs=34.1
Q ss_pred CCCceEEEeee--ccCCCCCCCCeEEEEEEEEeCCCCceeeeccc
Q 030508 132 DSGLIYRDFEV--GKGDCPKDGQQVFLLSSLEAISSCSCYDISIR 174 (176)
Q Consensus 132 ~SGL~YkDik~--GtG~~P~~GqtVtVHYtG~L~~dG~vFDSS~~ 174 (176)
.++|+++.++. .-..++++||+|.+||+|.| +||++|||||.
T Consensus 67 ~~~l~I~v~~~p~~C~~kak~GD~l~~HY~g~l-eDGt~fdSS~~ 110 (188)
T KOG0549|consen 67 DEELQIGVLKKPEECPEKAKKGDTLHVHYTGSL-EDGTKFDSSYS 110 (188)
T ss_pred CCceeEEEEECCccccccccCCCEEEEEEEEEe-cCCCEEeeecc
Confidence 45677766654 24566899999999999987 99999999985
No 8
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=97.67 E-value=5.8e-05 Score=53.35 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=24.1
Q ss_pred CCCCCCeEEEEEEEEeCCCCceeeecc
Q 030508 147 CPKDGQQVFLLSSLEAISSCSCYDISI 173 (176)
Q Consensus 147 ~P~~GqtVtVHYtG~L~~dG~vFDSS~ 173 (176)
+|+.|++|++||+|++ .||++||+|+
T Consensus 4 ~~~~gd~V~i~y~~~~-~~g~~~~~~~ 29 (94)
T PF00254_consen 4 TPKEGDTVTIHYTGRL-EDGKVFDSSY 29 (94)
T ss_dssp SBSTTSEEEEEEEEEE-TTSEEEEETT
T ss_pred cCCCCCEEEEEEEEEE-CCCcEEEEee
Confidence 3999999999999999 6999999994
No 9
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0011 Score=61.48 Aligned_cols=61 Identities=28% Similarity=0.397 Sum_probs=49.1
Q ss_pred hhcCCCCCCcccccccceeeEeecCCcccCCCCceEEEeeeccC--CCCCCCCeEEEEEEEEeCCCCceeeec
Q 030508 102 KENSAPEGFPNFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKG--DCPKDGQQVFLLSSLEAISSCSCYDIS 172 (176)
Q Consensus 102 ~~n~~P~dfp~fireg~~vkvv~~~g~~tt~SGL~YkDik~GtG--~~P~~GqtVtVHYtG~L~~dG~vFDSS 172 (176)
-+-+.|+.+|.+--.=|+|+-+ +-||+-++|++|.| ..|.+|..|+|||.|++ .|| +||.+
T Consensus 61 g~~~~pp~ip~~a~l~fe~el~--------Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~-~~~-~f~~~ 123 (397)
T KOG0543|consen 61 GEAGSPPKIPSNATLLFEVELL--------DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGEL-EDG-VFDQR 123 (397)
T ss_pred cccCCCCCCCCCcceeeeeccc--------CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEE-CCc-ceecc
Confidence 3446888888887777776665 45666678899999 77999999999999998 666 99876
No 10
>PF01346 FKBP_N: Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; InterPro: IPR000774 Peptidyl-prolyl cis-trans isomerase (PPIase) catalyses the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides [, ]. This alpha helical domain is found at the N terminus of proteins belonging to the FKBP-type peptidyl-prolyl cis-trans isomerase(IPR001179 from INTERPRO) family. Peptidyl-prolyl cis-trans isomerase has been shown to accelerate the refolding of several proteins in vitro [, , ]; the FKPB-type enzymes probably act in the folding of extracytoplasmic proteins.; GO: 0006457 protein folding; PDB: 1FD9_A 2VCD_A 3OE2_A 2UZ5_A 3B09_A 1Q6H_B 1Q6I_B 1Q6U_A.
Probab=85.41 E-value=0.48 Score=35.40 Aligned_cols=17 Identities=29% Similarity=0.479 Sum_probs=12.3
Q ss_pred eecCCcccCCCCceEEE
Q 030508 123 VTSENYTKRDSGLIYRD 139 (176)
Q Consensus 123 v~~~g~~tt~SGL~YkD 139 (176)
-..+|+++|+|||+|++
T Consensus 108 ~k~~GV~~t~SGLqY~V 124 (124)
T PF01346_consen 108 AKKEGVKTTESGLQYKV 124 (124)
T ss_dssp HTSTTEEE-TTS-EEEE
T ss_pred cCCCCCEECCCCCeeeC
Confidence 34488999999999985
No 11
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=78.91 E-value=1.7 Score=38.74 Aligned_cols=27 Identities=7% Similarity=-0.006 Sum_probs=22.5
Q ss_pred CCCCCCCCeEEEEEEEEeCCCCceeeecc
Q 030508 145 GDCPKDGQQVFLLSSLEAISSCSCYDISI 173 (176)
Q Consensus 145 G~~P~~GqtVtVHYtG~L~~dG~vFDSS~ 173 (176)
...++.|+.|+|||+|.. +|+.||++.
T Consensus 144 ~~~~~~gD~V~v~~~~~~--dg~~~~~~~ 170 (408)
T TIGR00115 144 RRAAEKGDRVTIDFEGFI--DGEAFEGGK 170 (408)
T ss_pred ccccCCCCEEEEEEEEEE--CCEECcCCC
Confidence 335789999999999965 999999863
No 12
>PRK01490 tig trigger factor; Provisional
Probab=74.90 E-value=3.2 Score=37.45 Aligned_cols=24 Identities=8% Similarity=0.005 Sum_probs=21.4
Q ss_pred CCCCCCeEEEEEEEEeCCCCceeeec
Q 030508 147 CPKDGQQVFLLSSLEAISSCSCYDIS 172 (176)
Q Consensus 147 ~P~~GqtVtVHYtG~L~~dG~vFDSS 172 (176)
.++.|+.|+|||+|.. ||+.||+.
T Consensus 157 ~~~~gD~V~vd~~~~~--~g~~~~~~ 180 (435)
T PRK01490 157 PAENGDRVTIDFVGSI--DGEEFEGG 180 (435)
T ss_pred cCCCCCEEEEEEEEEE--CCEECcCC
Confidence 4799999999999986 99999875
No 13
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=61.26 E-value=3.9 Score=31.02 Aligned_cols=39 Identities=23% Similarity=0.281 Sum_probs=21.0
Q ss_pred hhhhhHHHHhhcccccccccccCCCCCCCchhHHHHHHhHHHhhhcCCCC
Q 030508 59 KRRVVPFLLFSSGLFPTLSASGKTKSKNPYDEKRLLEQNKRMQKENSAPE 108 (176)
Q Consensus 59 rRr~~~~~~~~~~~~~~~~~~~k~~~~~p~~e~~~l~~n~riq~~n~~P~ 108 (176)
+.-+||.|++|+.|+++... ..+-++++.+.++.|++.+
T Consensus 4 K~~llL~l~LA~lLlisSev-----------aa~~~~~~~~~~~~~~v~~ 42 (95)
T PF07172_consen 4 KAFLLLGLLLAALLLISSEV-----------AARELEETEKEEEENEVQD 42 (95)
T ss_pred hHHHHHHHHHHHHHHHHhhh-----------hhHHhhhccccccCCCCCc
Confidence 33456666677655533221 1222356667777777664
No 14
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=52.93 E-value=30 Score=28.76 Aligned_cols=11 Identities=9% Similarity=-0.272 Sum_probs=8.0
Q ss_pred CeEEEEEEEEe
Q 030508 152 QQVFLLSSLEA 162 (176)
Q Consensus 152 qtVtVHYtG~L 162 (176)
.+|.|+|+|-+
T Consensus 89 ~~v~V~Y~Gil 99 (160)
T PRK13165 89 GSVTVTYEGIL 99 (160)
T ss_pred eEEEEEEcccC
Confidence 46888888854
No 15
>PTZ00414 10 kDa heat shock protein; Provisional
Probab=50.29 E-value=40 Score=26.01 Aligned_cols=33 Identities=15% Similarity=0.058 Sum_probs=23.6
Q ss_pred EEEeeeccCCC-----CCCCCeEEEE-EEEEeCC-CCcee
Q 030508 137 YRDFEVGKGDC-----PKDGQQVFLL-SSLEAIS-SCSCY 169 (176)
Q Consensus 137 YkDik~GtG~~-----P~~GqtVtVH-YtG~L~~-dG~vF 169 (176)
=+.+.+|.|.. .+.||+|.+. |.|+-+. ||+.|
T Consensus 47 g~VvAVG~G~~~~~~~Vk~GD~Vl~~~y~Gtevk~dg~ey 86 (100)
T PTZ00414 47 GTVVAVAAATKDWTPTVKVGDTVLLPEFGGSSVKVEGEEF 86 (100)
T ss_pred eEEEEECCCCccccceecCCCEEEEcCCCCcEEEECCEEE
Confidence 35778899853 6999999987 8886422 56554
No 16
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=45.38 E-value=15 Score=35.19 Aligned_cols=31 Identities=29% Similarity=0.507 Sum_probs=27.9
Q ss_pred CCchhHHHHHHhHHHhhhcCCCCCCcccccccce
Q 030508 86 NPYDEKRLLEQNKRMQKENSAPEGFPNFIREGFE 119 (176)
Q Consensus 86 ~p~~e~~~l~~n~riq~~n~~P~dfp~fireg~~ 119 (176)
.|..|..+|..-++|-..|. +|++||..||=
T Consensus 55 ~~~sE~e~l~~l~~ia~kN~---~~~sfiG~GyY 85 (450)
T COG0403 55 KPLSEYEALAELKEIASKNK---VFTSFIGAGYY 85 (450)
T ss_pred CCCCHHHHHHHHHHHHhcCc---hhhhhccCccc
Confidence 45689999999999999998 99999999983
No 17
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=44.78 E-value=22 Score=33.45 Aligned_cols=23 Identities=9% Similarity=0.065 Sum_probs=20.1
Q ss_pred CCCCCeEEEEEEEEeCCCCceeeec
Q 030508 148 PKDGQQVFLLSSLEAISSCSCYDIS 172 (176)
Q Consensus 148 P~~GqtVtVHYtG~L~~dG~vFDSS 172 (176)
++.|++|+++|.|. .||..|+.-
T Consensus 158 a~~gD~v~IDf~g~--iDg~~fegg 180 (441)
T COG0544 158 AENGDRVTIDFEGS--VDGEEFEGG 180 (441)
T ss_pred cccCCEEEEEEEEE--EcCeeccCc
Confidence 89999999999995 499998753
No 18
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=38.02 E-value=17 Score=24.24 Aligned_cols=11 Identities=0% Similarity=-0.157 Sum_probs=9.7
Q ss_pred CeEEEEEEEEe
Q 030508 152 QQVFLLSSLEA 162 (176)
Q Consensus 152 qtVtVHYtG~L 162 (176)
...-|||.||.
T Consensus 31 ~~YyVHY~g~n 41 (55)
T PF11717_consen 31 PEYYVHYQGWN 41 (55)
T ss_dssp EEEEEEETTST
T ss_pred EEEEEEcCCCC
Confidence 68999999975
No 19
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=36.49 E-value=1.5e+02 Score=20.78 Aligned_cols=34 Identities=26% Similarity=0.391 Sum_probs=20.2
Q ss_pred cccceeeEeecCCcccCCCCceEEEe-eeccCCCCCCCCeEEEEEEE
Q 030508 115 REGFEVKVVTSENYTKRDSGLIYRDF-EVGKGDCPKDGQQVFLLSSL 160 (176)
Q Consensus 115 reg~~vkvv~~~g~~tt~SGL~YkDi-k~GtG~~P~~GqtVtVHYtG 160 (176)
.+||+|+.+.- .++|. |+.. ... .|+.|.|++..
T Consensus 40 ~~G~~v~~ve~-----~~~g~-yev~~~~~------dG~~~ev~vD~ 74 (83)
T PF13670_consen 40 AQGYQVREVEF-----DDDGC-YEVEARDK------DGKKVEVYVDP 74 (83)
T ss_pred hcCCceEEEEE-----cCCCE-EEEEEEEC------CCCEEEEEEcC
Confidence 46888888872 12333 4443 222 36688888876
No 20
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=32.33 E-value=52 Score=27.38 Aligned_cols=12 Identities=8% Similarity=-0.219 Sum_probs=8.9
Q ss_pred eEEEEEEEEeCCC
Q 030508 153 QVFLLSSLEAISS 165 (176)
Q Consensus 153 tVtVHYtG~L~~d 165 (176)
+|.|+|+|-+ .|
T Consensus 90 ~v~V~Y~Gil-PD 101 (159)
T PRK13150 90 SVTVSYEGIL-PD 101 (159)
T ss_pred EEEEEEeccC-Cc
Confidence 6888888865 43
No 21
>PF10877 DUF2671: Protein of unknown function (DUF2671); InterPro: IPR022715 This family of proteins with unknown function appears to be restricted to Rickettsia spp.
Probab=29.58 E-value=71 Score=24.23 Aligned_cols=12 Identities=33% Similarity=0.706 Sum_probs=9.0
Q ss_pred cccccceeeEee
Q 030508 113 FIREGFEVKVVT 124 (176)
Q Consensus 113 fireg~~vkvv~ 124 (176)
-||+||||..+.
T Consensus 40 sirkgydvtql~ 51 (90)
T PF10877_consen 40 SIRKGYDVTQLP 51 (90)
T ss_pred hhhcccceeecc
Confidence 378888887775
No 22
>PF14510 ABC_trans_N: ABC-transporter extracellular N-terminal
Probab=28.50 E-value=74 Score=22.65 Aligned_cols=46 Identities=22% Similarity=0.380 Sum_probs=33.4
Q ss_pred CchhHHHHHHhHHHhhhcCCCCCCcccccccceeeEeecCCcccCCCCceEEEe-eeccCCCCCCCCeE
Q 030508 87 PYDEKRLLEQNKRMQKENSAPEGFPNFIREGFEVKVVTSENYTKRDSGLIYRDF-EVGKGDCPKDGQQV 154 (176)
Q Consensus 87 p~~e~~~l~~n~riq~~n~~P~dfp~fireg~~vkvv~~~g~~tt~SGL~YkDi-k~GtG~~P~~GqtV 154 (176)
-||-++.|+.-.+...+..++ ....|+.|+++ ..|.|....-..||
T Consensus 33 ~Fdl~~~lr~~~~~~~~~g~~----------------------~r~~GV~fknLtV~G~g~~~~~q~Tv 79 (85)
T PF14510_consen 33 DFDLRRWLRNFVRRAEEQGIK----------------------PRKAGVSFKNLTVYGVGAGAQYQPTV 79 (85)
T ss_pred cccHHHHHHHHHHHHHhCCCC----------------------CCeEEEEEeCCeEEEEecCccccCch
Confidence 378888898877777776555 25678999998 67888766655554
No 23
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=27.97 E-value=29 Score=28.89 Aligned_cols=63 Identities=25% Similarity=0.257 Sum_probs=32.1
Q ss_pred hhhhhHHHHhhcccccccccccCCCCCCCchhHHHHHHhHHHhhhcCCCCCCcccccccceeeEeecCCcccC
Q 030508 59 KRRVVPFLLFSSGLFPTLSASGKTKSKNPYDEKRLLEQNKRMQKENSAPEGFPNFIREGFEVKVVTSENYTKR 131 (176)
Q Consensus 59 rRr~~~~~~~~~~~~~~~~~~~k~~~~~p~~e~~~l~~n~riq~~n~~P~dfp~fireg~~vkvv~~~g~~tt 131 (176)
||+.++..+++.+|..++.+.+.+..+--|...--=+=+.=+|..- ..||+|+++..+++.+.
T Consensus 2 rr~~~l~~l~a~~l~~~~~~~a~~~~~~vyksPnCGCC~~w~~~mk----------~~Gf~Vk~~~~~d~~al 64 (149)
T COG3019 2 RRRAFLRSLAALGLGSTGPAQAQATEMVVYKSPNCGCCDEWAQHMK----------ANGFEVKVVETDDFLAL 64 (149)
T ss_pred chhHHHHHHHHHHhhcccchhcceeeEEEEeCCCCccHHHHHHHHH----------hCCcEEEEeecCcHHHH
Confidence 6777777777766666666554333332221110001111122211 34899998887766544
No 24
>PRK14533 groES co-chaperonin GroES; Provisional
Probab=26.78 E-value=71 Score=24.00 Aligned_cols=32 Identities=28% Similarity=0.208 Sum_probs=22.0
Q ss_pred EEeeeccCC-----CCCCCCeEEEE-EEEEeCC-CCcee
Q 030508 138 RDFEVGKGD-----CPKDGQQVFLL-SSLEAIS-SCSCY 169 (176)
Q Consensus 138 kDik~GtG~-----~P~~GqtVtVH-YtG~L~~-dG~vF 169 (176)
+.+.+|.|. +.+.||+|.++ |.|+-+. +|+.|
T Consensus 39 ~VvavG~g~~~~~~~Vk~GD~Vl~~~y~g~ev~~~~~~y 77 (91)
T PRK14533 39 EVVAVGKLDDEEDFDIKVGDKVIFSKYAGTEIKIDDEDY 77 (91)
T ss_pred EEEEECCCCccccccccCCCEEEEccCCCeEEEECCEEE
Confidence 566778775 37899999988 8886432 55443
No 25
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=26.36 E-value=10 Score=24.92 Aligned_cols=11 Identities=9% Similarity=0.126 Sum_probs=5.6
Q ss_pred ccchhhhhHHH
Q 030508 56 VKLKRRVVPFL 66 (176)
Q Consensus 56 ~~~rRr~~~~~ 66 (176)
...|||+|...
T Consensus 8 ~~~RRdFL~~a 18 (41)
T PF10399_consen 8 DPTRRDFLTIA 18 (41)
T ss_dssp --HHHHHHHHH
T ss_pred CchHHHHHHHH
Confidence 35677777433
No 26
>PF07076 DUF1344: Protein of unknown function (DUF1344); InterPro: IPR009780 This family consists of several short, hypothetical bacterial proteins of around 80 residues in length. Members of this family are found in Rhizobium, Agrobacterium and Brucella species. The function of this family is unknown.
Probab=26.35 E-value=1.7e+02 Score=20.98 Aligned_cols=42 Identities=19% Similarity=0.013 Sum_probs=30.1
Q ss_pred cccCCCCceEEEeeeccCCCCCCCCeEEEEEEEEeCCCCceeeec
Q 030508 128 YTKRDSGLIYRDFEVGKGDCPKDGQQVFLLSSLEAISSCSCYDIS 172 (176)
Q Consensus 128 ~~tt~SGL~YkDik~GtG~~P~~GqtVtVHYtG~L~~dG~vFDSS 172 (176)
.++.++|=.|.--.+=+=+..++|..|.|+|+= .+|+.+=++
T Consensus 18 titLdDGksy~lp~ef~~~~L~~G~kV~V~yd~---~~gk~vitd 59 (61)
T PF07076_consen 18 TITLDDGKSYKLPEEFDFDGLKPGMKVVVFYDE---VDGKRVITD 59 (61)
T ss_pred EEEecCCCEEECCCcccccccCCCCEEEEEEEc---cCCcEEeee
Confidence 566788877765555555568999999999986 467665443
No 27
>PF13224 DUF4032: Domain of unknown function (DUF4032)
Probab=25.88 E-value=71 Score=26.82 Aligned_cols=31 Identities=32% Similarity=0.567 Sum_probs=24.6
Q ss_pred hhHHHHHHhHHHhhhcCCCCCCcccccccceeeEeecCCcccCCCC
Q 030508 89 DEKRLLEQNKRMQKENSAPEGFPNFIREGFEVKVVTSENYTKRDSG 134 (176)
Q Consensus 89 ~e~~~l~~n~riq~~n~~P~dfp~fireg~~vkvv~~~g~~tt~SG 134 (176)
+|+ -.=.+||.+.| .-||||..+. ..+.++|
T Consensus 16 ~e~--~ri~~ri~rLN----------~LGFdV~El~---~~~~~~g 46 (165)
T PF13224_consen 16 DER--WRIEERIRRLN----------ELGFDVGELE---ITTDDDG 46 (165)
T ss_pred hHH--HHHHHHHHHHH----------hcCCceeeeE---eEEcCCC
Confidence 455 33458999999 5799999999 8888888
No 28
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=25.83 E-value=71 Score=23.42 Aligned_cols=15 Identities=27% Similarity=0.315 Sum_probs=10.2
Q ss_pred hhhhhHHHHhhcccc
Q 030508 59 KRRVVPFLLFSSGLF 73 (176)
Q Consensus 59 rRr~~~~~~~~~~~~ 73 (176)
+|+++++|+++++.+
T Consensus 2 s~~viIaL~~avaa~ 16 (66)
T PF10907_consen 2 SRRVIIALVVAVAAA 16 (66)
T ss_pred CcchhHHHHHHHHhh
Confidence 577888888665333
No 29
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=24.86 E-value=60 Score=32.42 Aligned_cols=37 Identities=24% Similarity=0.298 Sum_probs=30.4
Q ss_pred cccceeeEeecCCcccCCCCceEEEeeeccCCCCCCCC
Q 030508 115 REGFEVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQ 152 (176)
Q Consensus 115 reg~~vkvv~~~g~~tt~SGL~YkDik~GtG~~P~~Gq 152 (176)
-|||+-+++.+-|...-+.+..|.+++ +.|+...++|
T Consensus 73 ~~GY~a~v~~~wGdp~~p~~~~~~~~~-~~g~~~q~~~ 109 (616)
T COG3211 73 PEGYGATVLDPWGDPLFPAGPEYDVIK-RVGAKAQDGQ 109 (616)
T ss_pred cCCcCceeeccCCCcccCCCccccccc-ccchhhcccC
Confidence 379999999999999999999998886 4556666676
No 30
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=23.80 E-value=96 Score=25.38 Aligned_cols=33 Identities=36% Similarity=0.491 Sum_probs=27.8
Q ss_pred cCCCCCCCchhHHHHHHhHHHhhhcCCCCCCcc
Q 030508 80 GKTKSKNPYDEKRLLEQNKRMQKENSAPEGFPN 112 (176)
Q Consensus 80 ~k~~~~~p~~e~~~l~~n~riq~~n~~P~dfp~ 112 (176)
...+...+.+-..+|..-+||-+.+.+|+.||+
T Consensus 73 ~~~~~~~~v~~~eLL~YA~rISk~t~~p~~~~~ 105 (188)
T PF10018_consen 73 IPKAEKRPVDYEELLSYAHRISKFTSAPPTFPS 105 (188)
T ss_pred ccccccCCCCHHHHHHHHHHHHHhcCCCCCCCC
Confidence 445667888999999999999999999877754
No 31
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=23.67 E-value=1.4e+02 Score=24.86 Aligned_cols=44 Identities=16% Similarity=0.021 Sum_probs=24.0
Q ss_pred ccccccceeeEeecCCcccCCCCceEEEeeeccCCCCCCCCeEEEEEEEEeCCC
Q 030508 112 NFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVFLLSSLEAISS 165 (176)
Q Consensus 112 ~fireg~~vkvv~~~g~~tt~SGL~YkDik~GtG~~P~~GqtVtVHYtG~L~~d 165 (176)
.-||-|=-|+.=+ ....+.++.+ .+.+-+| ..+|.|+|+|-+ .|
T Consensus 52 ~~~RlGG~V~~GS---v~r~~~~~~v-~F~vtD~-----~~~v~V~Y~Gil-PD 95 (155)
T PRK13159 52 QQFRLGGMVKAGS---IQRAADSLKV-SFTVIDK-----NAATQVEYTGIL-PD 95 (155)
T ss_pred CeEEEccEEecCc---EEEcCCCcEE-EEEEEcC-----CcEEEEEEccCC-Cc
Confidence 5566665555332 3333454422 2333444 458899999965 54
No 32
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=23.54 E-value=1.1e+02 Score=21.35 Aligned_cols=43 Identities=16% Similarity=0.243 Sum_probs=21.8
Q ss_pred cccceeeEeecCCcccCCCCceEEEeee--cc-CCCCCCCCeEEEEEEEE
Q 030508 115 REGFEVKVVTSENYTKRDSGLIYRDFEV--GK-GDCPKDGQQVFLLSSLE 161 (176)
Q Consensus 115 reg~~vkvv~~~g~~tt~SGL~YkDik~--Gt-G~~P~~GqtVtVHYtG~ 161 (176)
+.||.+++- .++|++|-+....+. +. .........+.+=..|-
T Consensus 7 ~~GY~~E~h----~V~T~DGYiL~l~RIp~~~~~~~~~~~k~pVll~HGL 52 (63)
T PF04083_consen 7 KHGYPCEEH----EVTTEDGYILTLHRIPPGKNSSNQNKKKPPVLLQHGL 52 (63)
T ss_dssp HTT---EEE----EEE-TTSEEEEEEEE-SBTTCTTTTTT--EEEEE--T
T ss_pred HcCCCcEEE----EEEeCCCcEEEEEEccCCCCCcccCCCCCcEEEECCc
Confidence 458888887 488999955544443 43 33456666777777773
No 33
>COG3168 PilP Tfp pilus assembly protein PilP [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=22.72 E-value=2.8e+02 Score=23.63 Aligned_cols=80 Identities=18% Similarity=0.137 Sum_probs=39.4
Q ss_pred ccCCCCCCCchhHHHHHHhHHHhhhcC-CCCCCccccc---ccceeeEeecCCcccCCCCceEEEeeeccCCCCCCCCeE
Q 030508 79 SGKTKSKNPYDEKRLLEQNKRMQKENS-APEGFPNFIR---EGFEVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQV 154 (176)
Q Consensus 79 ~~k~~~~~p~~e~~~l~~n~riq~~n~-~P~dfp~fir---eg~~vkvv~~~g~~tt~SGL~YkDik~GtG~~P~~GqtV 154 (176)
|...+...||.....-+- .+-|..|. +|+ |.-++ |+|-++.+.--|.+ .+|=...-+.++.|.. .+|
T Consensus 53 Ys~~k~r~PF~~~~~a~l-t~~q~~n~~~Pd--p~r~kepLE~fpLe~~rlvGtm--~~g~~~~A~i~~~~~v----~~V 123 (170)
T COG3168 53 YSAPKLRDPFSFPKRAML-TDPQGENDWAPD--PKRRKEPLEKFPLETFRLVGTL--KSGQGVSALIEAPGGV----YRV 123 (170)
T ss_pred cccccccCCCcchhhhhh-ccccccCCCCCC--cccccCchhhCChhheeeEEEe--cCCCceEEEEEcCCce----EEE
Confidence 444556667655443322 23344442 354 44443 67888887743333 3333334443333331 233
Q ss_pred EE-EEEEEeCCCCcee
Q 030508 155 FL-LSSLEAISSCSCY 169 (176)
Q Consensus 155 tV-HYtG~L~~dG~vF 169 (176)
.| +|.|.. +|++-
T Consensus 124 ~vG~YlGqN--~GrV~ 137 (170)
T COG3168 124 RVGQYLGQN--YGRVV 137 (170)
T ss_pred eeccEeecc--CceEE
Confidence 32 488865 78764
No 34
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=21.83 E-value=1.8e+02 Score=23.70 Aligned_cols=12 Identities=8% Similarity=-0.144 Sum_probs=7.9
Q ss_pred CCeEEEEEEEEe
Q 030508 151 GQQVFLLSSLEA 162 (176)
Q Consensus 151 GqtVtVHYtG~L 162 (176)
+.+|.|+|+|-+
T Consensus 81 ~~~i~V~Y~G~l 92 (148)
T PRK13254 81 NATVPVVYTGIL 92 (148)
T ss_pred CeEEEEEECCCC
Confidence 456777777754
No 35
>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional
Probab=21.51 E-value=1.1e+02 Score=27.55 Aligned_cols=40 Identities=23% Similarity=0.317 Sum_probs=21.7
Q ss_pred CCcceEEeecCCCcccCCccccccchhhhhHHHHhhc-c----ccccccccc
Q 030508 34 QKKHIVRCSSSHNLKDNGFHCKVKLKRRVVPFLLFSS-G----LFPTLSASG 80 (176)
Q Consensus 34 ~~~~~~~c~~~~~~~~~~~~~~~~~rRr~~~~~~~~~-~----~~~~~~~~~ 80 (176)
.+...+.|..+... .....||.++.++++. + +.++-++||
T Consensus 33 ~~~~~~~~~~~~~~-------~~~~srr~~l~~~~ga~a~~~~~~pa~aay~ 77 (260)
T PLN00042 33 SRPSQVVCRAQEED-------NSAVSRRAALALLAGAAAAGAKVSPANAAYG 77 (260)
T ss_pred CCCcceeeeccccc-------cccccHHHHHHHHHHHHHhhcccCchhhhhc
Confidence 44557889886442 2334555555555554 3 235555665
No 36
>PHA02122 hypothetical protein
Probab=21.21 E-value=1.3e+02 Score=21.89 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=15.0
Q ss_pred CCCeEEEEEEEEeCCCCcee
Q 030508 150 DGQQVFLLSSLEAISSCSCY 169 (176)
Q Consensus 150 ~GqtVtVHYtG~L~~dG~vF 169 (176)
.|+.|.|+|.-.. ||+.|
T Consensus 40 ~gd~v~vn~e~~~--ng~l~ 57 (65)
T PHA02122 40 DGDEVIVNFELVV--NGKLI 57 (65)
T ss_pred CCCEEEEEEEEEE--CCEEE
Confidence 5789999999865 88877
No 37
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=20.69 E-value=1e+02 Score=22.97 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=18.2
Q ss_pred EEeeeccCC----------CCCCCCeEEEE-EEEEe
Q 030508 138 RDFEVGKGD----------CPKDGQQVFLL-SSLEA 162 (176)
Q Consensus 138 kDik~GtG~----------~P~~GqtVtVH-YtG~L 162 (176)
+.+.+|.|. +.+.||+|.++ |.|+-
T Consensus 39 ~VvaVG~G~~~~~G~~~~~~vk~GD~Vlf~~~~g~e 74 (95)
T PRK00364 39 EVVAVGPGRRLDNGERVPLDVKVGDKVLFGKYAGTE 74 (95)
T ss_pred EEEEECCCeECCCCCEeecccCCCCEEEEcCCCCeE
Confidence 566777765 47889999886 77754
No 38
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=20.64 E-value=1.1e+02 Score=22.71 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=21.3
Q ss_pred EEeeeccCC----------CCCCCCeEEEE-EEEEeCC-CCce
Q 030508 138 RDFEVGKGD----------CPKDGQQVFLL-SSLEAIS-SCSC 168 (176)
Q Consensus 138 kDik~GtG~----------~P~~GqtVtVH-YtG~L~~-dG~v 168 (176)
+.+.+|.|. ..+.||+|.++ |.|+-+. +|+.
T Consensus 38 ~VvAVG~g~~~~~g~~~~~~vk~GD~Vl~~~~~g~~v~~~~~~ 80 (93)
T cd00320 38 KVVAVGPGRRNENGERVPLSVKVGDKVLFPKYAGTEVKLDGEE 80 (93)
T ss_pred EEEEECCCeECCCCCCccccccCCCEEEECCCCceEEEECCEE
Confidence 577788884 37999999876 7776432 4444
No 39
>cd04486 YhcR_OBF_like YhcR_OBF_like: A subfamily of OB-fold domains similar to the OB folds of Bacillus subtilis YhcR. YhcR is a sugar-nonspecific nuclease, which is active in the presence of Ca2+ and Mn2+. It cleaves RNA endonucleolytically, producing 3'-monophosphate nucleosides. YhcR appears to be the major Ca2+ activated nuclease of B. subtilis. YhcR may be localized in the cell wall.
Probab=20.15 E-value=2.2e+02 Score=20.33 Aligned_cols=41 Identities=15% Similarity=0.118 Sum_probs=25.7
Q ss_pred cceeeEeecCCcccCCCCceEEEeeeccCCCCCCCCeEEEEEEEEe
Q 030508 117 GFEVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVFLLSSLEA 162 (176)
Q Consensus 117 g~~vkvv~~~g~~tt~SGL~YkDik~GtG~~P~~GqtVtVHYtG~L 162 (176)
||=|.....++-..+..|+-+.--+ ...++.||.|.|. |+.
T Consensus 17 GffiQd~~~d~~~~ts~gifV~~~~---~~~~~~Gd~V~vt--G~v 57 (78)
T cd04486 17 GFYIQDEDGDGDPATSEGIFVYTGS---GADVAVGDLVRVT--GTV 57 (78)
T ss_pred EEEEEcCCCCCCCcccceEEEecCC---CCCCCCCCEEEEE--EEE
Confidence 5555554444455666675444322 6778999999984 765
Done!