BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030509
(176 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224053911|ref|XP_002298037.1| predicted protein [Populus trichocarpa]
gi|222845295|gb|EEE82842.1| predicted protein [Populus trichocarpa]
Length = 170
Score = 241 bits (616), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 116/168 (69%), Positives = 140/168 (83%)
Query: 1 MKYVKPLRLFEQMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTID 60
MKYV+PL LF ++LK +GRFLGLDVGDKYVGL++SDP NKIASPLSVLLRKK+ I+
Sbjct: 1 MKYVRPLSLFHELLKTSAINQGRFLGLDVGDKYVGLAVSDPLNKIASPLSVLLRKKSNIE 60
Query: 61 LMAEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEG 120
LMA DF+SLISE +L GFIVGYPF+RQ+ A DAV+VKLF+DDL T KLE +K+ YW+E
Sbjct: 61 LMATDFQSLISELSLGGFIVGYPFDRQRGAPDAVRVKLFVDDLCKTGKLEGVKFTYWDEC 120
Query: 121 FTSKGVELLLNPLDLHPVEYKTILDKFAAVGILQEYLDNANRKVNLKA 168
FTSK VELL+ PLDLHPV K+I+DKFAAVGILQ YLD N+K+ L++
Sbjct: 121 FTSKNVELLVKPLDLHPVHAKSIMDKFAAVGILQGYLDYVNKKMKLES 168
>gi|297742527|emb|CBI34676.3| unnamed protein product [Vitis vinifera]
Length = 224
Score = 241 bits (615), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 116/162 (71%), Positives = 136/162 (83%)
Query: 1 MKYVKPLRLFEQMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTID 60
MKYVKP+ LF +LK K ++RGR LGLDVGDKYVGL++SD NKIASPLSVLLRKK+ ID
Sbjct: 56 MKYVKPVNLFHDLLKMKATERGRLLGLDVGDKYVGLAVSDLHNKIASPLSVLLRKKSNID 115
Query: 61 LMAEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEG 120
LMA DF+SLIS+ +L GFIVGYPFNRQ+++ AV VK+FIDDL T KLE ++Y YW+E
Sbjct: 116 LMATDFQSLISDLSLAGFIVGYPFNRQRSSPTAVNVKVFIDDLCKTGKLEGVRYTYWDEC 175
Query: 121 FTSKGVELLLNPLDLHPVEYKTILDKFAAVGILQEYLDNANR 162
FTSK VELLL PL+LHPV+ KTILDKFAAVGILQ YLD+ NR
Sbjct: 176 FTSKNVELLLKPLNLHPVQSKTILDKFAAVGILQGYLDHVNR 217
>gi|225426409|ref|XP_002269986.1| PREDICTED: putative Holliday junction resolvase [Vitis vinifera]
Length = 169
Score = 240 bits (613), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 116/162 (71%), Positives = 136/162 (83%)
Query: 1 MKYVKPLRLFEQMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTID 60
MKYVKP+ LF +LK K ++RGR LGLDVGDKYVGL++SD NKIASPLSVLLRKK+ ID
Sbjct: 1 MKYVKPVNLFHDLLKMKATERGRLLGLDVGDKYVGLAVSDLHNKIASPLSVLLRKKSNID 60
Query: 61 LMAEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEG 120
LMA DF+SLIS+ +L GFIVGYPFNRQ+++ AV VK+FIDDL T KLE ++Y YW+E
Sbjct: 61 LMATDFQSLISDLSLAGFIVGYPFNRQRSSPTAVNVKVFIDDLCKTGKLEGVRYTYWDEC 120
Query: 121 FTSKGVELLLNPLDLHPVEYKTILDKFAAVGILQEYLDNANR 162
FTSK VELLL PL+LHPV+ KTILDKFAAVGILQ YLD+ NR
Sbjct: 121 FTSKNVELLLKPLNLHPVQSKTILDKFAAVGILQGYLDHVNR 162
>gi|255537457|ref|XP_002509795.1| conserved hypothetical protein [Ricinus communis]
gi|223549694|gb|EEF51182.1| conserved hypothetical protein [Ricinus communis]
Length = 168
Score = 231 bits (589), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 115/168 (68%), Positives = 136/168 (80%), Gaps = 2/168 (1%)
Query: 1 MKYVKPLRLFEQMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTID 60
MKY+KP+ LF ++K K GR LGLDVGDKYVGL+ISD NKIASPLSVLLRKK+ ID
Sbjct: 1 MKYMKPIALFNDLMKSK--SNGRLLGLDVGDKYVGLAISDRHNKIASPLSVLLRKKSNID 58
Query: 61 LMAEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEG 120
L+A DF+SLISE +L GF+VGYPF+RQ++ DA+ VKLFIDDL KLE +KY +W+E
Sbjct: 59 LVATDFQSLISELSLAGFVVGYPFDRQRSTPDALHVKLFIDDLRKIGKLEGLKYTFWDEC 118
Query: 121 FTSKGVELLLNPLDLHPVEYKTILDKFAAVGILQEYLDNANRKVNLKA 168
FTSK VELL+ PLDLHPVE KTI+DKFAAVGILQ YLD NRK+ L+A
Sbjct: 119 FTSKNVELLVQPLDLHPVEAKTIMDKFAAVGILQGYLDYVNRKLKLEA 166
>gi|449452328|ref|XP_004143911.1| PREDICTED: putative Holliday junction resolvase-like isoform 2
[Cucumis sativus]
gi|449495809|ref|XP_004159951.1| PREDICTED: putative Holliday junction resolvase-like isoform 2
[Cucumis sativus]
Length = 169
Score = 227 bits (579), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 111/166 (66%), Positives = 132/166 (79%)
Query: 1 MKYVKPLRLFEQMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTID 60
MKYV+PL LF + KR + GR LGLDVGDKYVGL++SDP NKIA PLSVLLRKK T+D
Sbjct: 1 MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD 60
Query: 61 LMAEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEG 120
LMA+DF+ +ISEF+L GFIVGYPF+R +N DA+QVK+FIDDL T KLE +KY +W+E
Sbjct: 61 LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC 120
Query: 121 FTSKGVELLLNPLDLHPVEYKTILDKFAAVGILQEYLDNANRKVNL 166
FTSK VELL+ PL+L P KTI+DKFAAVGILQ YLD NR+ L
Sbjct: 121 FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPEL 166
>gi|7529715|emb|CAB86895.1| putative protein [Arabidopsis thaliana]
Length = 548
Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats.
Identities = 108/165 (65%), Positives = 129/165 (78%)
Query: 1 MKYVKPLRLFEQMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTID 60
MKYVKPL L LK KVS GRFLGLDVGDKYVGL+ISDP N +ASPLSVLLRKK+ ID
Sbjct: 379 MKYVKPLSLLGNALKTKVSVPGRFLGLDVGDKYVGLAISDPSNMVASPLSVLLRKKSNID 438
Query: 61 LMAEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEG 120
LMA DF++L+ F++ G +VGYPF + N D V V LFI++L T+KL+D+KY YW+E
Sbjct: 439 LMATDFQNLVKAFSVSGLVVGYPFGKLNNVEDVVTVNLFIEELRKTEKLKDVKYTYWDER 498
Query: 121 FTSKGVELLLNPLDLHPVEYKTILDKFAAVGILQEYLDNANRKVN 165
+SK VEL+L PL+LHPV+ KT+LDK AAV ILQEYLD ANR VN
Sbjct: 499 LSSKTVELMLKPLNLHPVQEKTMLDKLAAVVILQEYLDYANRYVN 543
>gi|297820018|ref|XP_002877892.1| hypothetical protein ARALYDRAFT_323835 [Arabidopsis lyrata subsp.
lyrata]
gi|297323730|gb|EFH54151.1| hypothetical protein ARALYDRAFT_323835 [Arabidopsis lyrata subsp.
lyrata]
Length = 542
Score = 221 bits (564), Expect = 6e-56, Method: Composition-based stats.
Identities = 107/165 (64%), Positives = 128/165 (77%)
Query: 1 MKYVKPLRLFEQMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTID 60
MKYVKPL L LK KVS GRFLGLDVGDKYVGL+ISDP N +ASPLSVLLRKK ID
Sbjct: 373 MKYVKPLSLLGNALKTKVSVPGRFLGLDVGDKYVGLAISDPSNMVASPLSVLLRKKTNID 432
Query: 61 LMAEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEG 120
LMA DF++L+ F++ G +VGYPF + N D V V LFI++L T+KL+D+KY YW+E
Sbjct: 433 LMATDFQNLVKAFSVSGLVVGYPFGKLNNVEDVVTVNLFIEELRKTEKLKDVKYTYWDER 492
Query: 121 FTSKGVELLLNPLDLHPVEYKTILDKFAAVGILQEYLDNANRKVN 165
+SK VEL+L PL+LHPV+ KT+LDK AAV ILQEYLD ANR +N
Sbjct: 493 LSSKTVELMLKPLNLHPVQEKTMLDKLAAVVILQEYLDYANRYLN 537
>gi|302398811|gb|ADL36700.1| GRF domain class transcription factor [Malus x domestica]
Length = 170
Score = 221 bits (564), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 120/172 (69%), Positives = 142/172 (82%), Gaps = 2/172 (1%)
Query: 1 MKYVKPLRLFEQMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTID 60
M+YVKPL LF+ +LK +RGR LGLDVGDKYVG+++SD NKIASPLSVLLRKK+ I
Sbjct: 1 MRYVKPLNLFQDLLKANTLERGRLLGLDVGDKYVGVAVSDLHNKIASPLSVLLRKKSNIG 60
Query: 61 LMAEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEG 120
LMA DF+SLISE +L GFIVGYPF+RQ+ DAVQVKLFIDDLS T+KLE +KY YW+EG
Sbjct: 61 LMAADFQSLISELSLVGFIVGYPFDRQKGTPDAVQVKLFIDDLSKTRKLEGLKYTYWDEG 120
Query: 121 FTSKGVELLLNPLDLHPVEYKTILDKFAAVGILQEYLDNANRKVNLKANVLR 172
FTSK VELLL PL+L PV+ KTI+DKFAAVGILQ YLD NR+ LK++V +
Sbjct: 121 FTSKNVELLLKPLNLPPVQSKTIMDKFAAVGILQGYLDYVNRE--LKSDVTQ 170
>gi|145332817|ref|NP_001078274.1| Polynucleotidyl transferase/ ribonuclease H-like protein
[Arabidopsis thaliana]
gi|26449955|dbj|BAC42098.1| unknown protein [Arabidopsis thaliana]
gi|332645487|gb|AEE79008.1| Polynucleotidyl transferase/ ribonuclease H-like protein
[Arabidopsis thaliana]
Length = 170
Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 108/165 (65%), Positives = 129/165 (78%)
Query: 1 MKYVKPLRLFEQMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTID 60
MKYVKPL L LK KVS GRFLGLDVGDKYVGL+ISDP N +ASPLSVLLRKK+ ID
Sbjct: 1 MKYVKPLSLLGNALKTKVSVPGRFLGLDVGDKYVGLAISDPSNMVASPLSVLLRKKSNID 60
Query: 61 LMAEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEG 120
LMA DF++L+ F++ G +VGYPF + N D V V LFI++L T+KL+D+KY YW+E
Sbjct: 61 LMATDFQNLVKAFSVSGLVVGYPFGKLNNVEDVVTVNLFIEELRKTEKLKDVKYTYWDER 120
Query: 121 FTSKGVELLLNPLDLHPVEYKTILDKFAAVGILQEYLDNANRKVN 165
+SK VEL+L PL+LHPV+ KT+LDK AAV ILQEYLD ANR VN
Sbjct: 121 LSSKTVELMLKPLNLHPVQEKTMLDKLAAVVILQEYLDYANRYVN 165
>gi|449452326|ref|XP_004143910.1| PREDICTED: putative Holliday junction resolvase-like isoform 1
[Cucumis sativus]
gi|449495806|ref|XP_004159950.1| PREDICTED: putative Holliday junction resolvase-like isoform 1
[Cucumis sativus]
Length = 177
Score = 219 bits (558), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 105/156 (67%), Positives = 126/156 (80%)
Query: 1 MKYVKPLRLFEQMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTID 60
MKYV+PL LF + KR + GR LGLDVGDKYVGL++SDP NKIA PLSVLLRKK T+D
Sbjct: 1 MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD 60
Query: 61 LMAEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEG 120
LMA+DF+ +ISEF+L GFIVGYPF+R +N DA+QVK+FIDDL T KLE +KY +W+E
Sbjct: 61 LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC 120
Query: 121 FTSKGVELLLNPLDLHPVEYKTILDKFAAVGILQEY 156
FTSK VELL+ PL+L P KTI+DKFAAVGILQ +
Sbjct: 121 FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQTF 156
>gi|7635496|emb|CAB88667.1| hypothetical 19.6 kDa protein [Cicer arietinum]
Length = 171
Score = 205 bits (522), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 100/169 (59%), Positives = 131/169 (77%), Gaps = 1/169 (0%)
Query: 1 MKYVKPLRLFEQMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTID 60
M+ +KPL+LF ++K +RGR +GLDVGDKYVGL++SD NKIASP SVL+RKK I+
Sbjct: 1 MRQMKPLQLFHDLVKTTQKERGRLIGLDVGDKYVGLALSDFDNKIASPFSVLVRKKTNIN 60
Query: 61 LMAEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEG 120
LMA DF+SL+S+++L+GF++G PF+R ++DAV+VK+FID+L T + +KY YWNE
Sbjct: 61 LMAADFKSLVSKYSLKGFVIGLPFDRHLVSSDAVKVKVFIDNLRRTNMFDGLKYTYWNEC 120
Query: 121 FTSKGVELLLNPLDL-HPVEYKTILDKFAAVGILQEYLDNANRKVNLKA 168
FTSK VE+L+ PL+L HPV KT+LDKFAAVGILQ YLD RK L A
Sbjct: 121 FTSKNVEILIKPLNLNHPVHSKTMLDKFAAVGILQGYLDYVYRKARLIA 169
>gi|388518895|gb|AFK47509.1| unknown [Medicago truncatula]
Length = 171
Score = 195 bits (495), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 97/169 (57%), Positives = 126/169 (74%), Gaps = 1/169 (0%)
Query: 1 MKYVKPLRLFEQMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTID 60
M+ +KPL LF ++K ++RGR +GLDVGDKYVGL++SD NK+ASP SVL+RKK+
Sbjct: 1 MRQMKPLELFHDLVKTTKNERGRLMGLDVGDKYVGLALSDFDNKVASPFSVLVRKKSNAS 60
Query: 61 LMAEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEG 120
LMA DF+SLIS+++L+G ++G PF + DAVQVK+ ID+L T LE +KY YWNE
Sbjct: 61 LMAADFKSLISKYSLKGLVIGVPFEYNLVSPDAVQVKVLIDNLRRTNMLEGLKYTYWNEC 120
Query: 121 FTSKGVELLLNPLDL-HPVEYKTILDKFAAVGILQEYLDNANRKVNLKA 168
FTSK VEL L PL+ + V+ KT+LDKFAAVGILQ Y+D ANRK +A
Sbjct: 121 FTSKNVELFLKPLNFKNAVQSKTMLDKFAAVGILQGYMDYANRKAKQRA 169
>gi|357481619|ref|XP_003611095.1| Hypothetical protein MTR_5g010310 [Medicago truncatula]
gi|355512430|gb|AES94053.1| Hypothetical protein MTR_5g010310 [Medicago truncatula]
Length = 176
Score = 195 bits (495), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 97/169 (57%), Positives = 126/169 (74%), Gaps = 1/169 (0%)
Query: 1 MKYVKPLRLFEQMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTID 60
M+ +KPL LF ++K ++RGR +GLDVGDKYVGL++SD NK+ASP SVL+RKK+
Sbjct: 6 MRQMKPLELFHDLVKTTKNERGRLMGLDVGDKYVGLALSDFDNKVASPFSVLVRKKSNAS 65
Query: 61 LMAEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEG 120
LMA DF+SLIS+++L+G ++G PF + DAVQVK+ ID+L T LE +KY YWNE
Sbjct: 66 LMAADFKSLISKYSLKGLVIGVPFEYNLVSPDAVQVKVLIDNLRRTNMLEGLKYTYWNEC 125
Query: 121 FTSKGVELLLNPLDL-HPVEYKTILDKFAAVGILQEYLDNANRKVNLKA 168
FTSK VEL L PL+ + V+ KT+LDKFAAVGILQ Y+D ANRK +A
Sbjct: 126 FTSKNVELFLKPLNFKNAVQSKTMLDKFAAVGILQGYMDYANRKAKQRA 174
>gi|115440129|ref|NP_001044344.1| Os01g0764700 [Oryza sativa Japonica Group]
gi|57899566|dbj|BAD87145.1| unknown protein [Oryza sativa Japonica Group]
gi|113533875|dbj|BAF06258.1| Os01g0764700 [Oryza sativa Japonica Group]
gi|215701312|dbj|BAG92736.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 178
Score = 190 bits (482), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 95/166 (57%), Positives = 125/166 (75%), Gaps = 2/166 (1%)
Query: 1 MKYVKPLRLFEQMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTID 60
M+ +K +LF +++ K+ R LGLDVG KYVGL++SD KN+IA PLSVL R K I
Sbjct: 1 MRLLKADQLFRKVIDGGWRKQSRLLGLDVGSKYVGLAVSDDKNRIALPLSVLSRTKTNIS 60
Query: 61 LMAEDFRSLISEFNLEGFIVGYPFNRQ-QNAADAVQVKLFIDDLSATKKLEDMKYAYWNE 119
LMA+DF +L+S+++L GF+VGYPFN Q Q++ +A+QV+L + +L T KL+DM Y YW+E
Sbjct: 61 LMADDFVTLVSKYSLAGFVVGYPFNLQGQSSPNALQVRLLVGELCKTGKLDDMSYTYWDE 120
Query: 120 GFTSKGVELLLNPLDLH-PVEYKTILDKFAAVGILQEYLDNANRKV 164
FTSK VE LL+PL LH PVE KT+ DKFAAV ILQ YLDN NR++
Sbjct: 121 NFTSKCVEALLHPLKLHDPVETKTMTDKFAAVCILQRYLDNMNREL 166
>gi|356540446|ref|XP_003538700.1| PREDICTED: LOW QUALITY PROTEIN: putative Holliday junction
resolvase-like [Glycine max]
Length = 170
Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 98/171 (57%), Positives = 122/171 (71%), Gaps = 6/171 (3%)
Query: 1 MKYVKPLRLFEQMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTID 60
M+Y+KPL+LF + K +RGR LGLDVGDKYVGL++SD N IASP SVL+RKK I
Sbjct: 1 MRYMKPLQLFHDL---KNQQRGRLLGLDVGDKYVGLALSDFDNNIASPFSVLVRKKTNIT 57
Query: 61 LMAEDFRSLISEFN--LEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWN 118
L+A DF SL S+ + ++G F++ Q ++DA+QVK+F D L TK LE +KY WN
Sbjct: 58 LVASDFESLCSDLSNKTSKHVIGISFDKHQVSSDAMQVKVFTDHLCKTKMLEGVKYTXWN 117
Query: 119 EGFTSKGVELLLNPLDL-HPVEYKTILDKFAAVGILQEYLDNANRKVNLKA 168
E FTSK VELLL PL+L H V KT+LDKFAAVGILQ Y+D NRK+ L A
Sbjct: 118 ESFTSKNVELLLKPLNLNHSVLSKTMLDKFAAVGILQGYMDFVNRKMKLTA 168
>gi|357136595|ref|XP_003569889.1| PREDICTED: putative Holliday junction resolvase-like [Brachypodium
distachyon]
Length = 175
Score = 186 bits (473), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 95/173 (54%), Positives = 122/173 (70%), Gaps = 3/173 (1%)
Query: 1 MKYVKPLRLFEQMLKRKVSK-RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTI 59
M+ +K LF ++L+ K + R LGLDVG KYVGL++SD +N+IA PLSVL R K I
Sbjct: 1 MRLIKAEELFRKVLESGAKKQKNRLLGLDVGSKYVGLAVSDHQNRIALPLSVLGRTKTNI 60
Query: 60 DLMAEDFRSLISEFNLEGFIVGYPFNRQ-QNAADAVQVKLFIDDLSATKKLEDMKYAYWN 118
LMA+DF++L+ +++L G +VGYPFN Q Q + DA+QV L + +L T KL+D+ Y YW+
Sbjct: 61 TLMADDFKTLVKKYSLAGLVVGYPFNLQGQCSPDAIQVSLLVGELCKTGKLDDLSYTYWD 120
Query: 119 EGFTSKGVELLLNPLDLH-PVEYKTILDKFAAVGILQEYLDNANRKVNLKANV 170
E FTSK VE LLNPL LH PVE KT+ DKFAAV ILQ YLDN NR + N
Sbjct: 121 ENFTSKCVEALLNPLKLHDPVETKTMTDKFAAVCILQGYLDNMNRALRSTDNC 173
>gi|326531638|dbj|BAJ97823.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 187
Score = 186 bits (471), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 94/172 (54%), Positives = 124/172 (72%), Gaps = 2/172 (1%)
Query: 1 MKYVKPLRLFEQMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTID 60
M+ +K LF ++L+ K+ R LGLDVG KYVGL++SD +N+IA PLSVL R K I+
Sbjct: 1 MRLLKAEELFRKLLEGGSKKKARLLGLDVGSKYVGLAVSDQQNRIALPLSVLGRTKTNIN 60
Query: 61 LMAEDFRSLISEFNLEGFIVGYPFNRQ-QNAADAVQVKLFIDDLSATKKLEDMKYAYWNE 119
LMA+DF++L++ ++L G +VGYPFN Q Q++ DA QV L + +L T KL+D+ Y YW+E
Sbjct: 61 LMADDFKTLVNNYSLAGLVVGYPFNLQGQSSPDASQVSLLVGELCKTGKLDDLSYTYWDE 120
Query: 120 GFTSKGVELLLNPLDLHP-VEYKTILDKFAAVGILQEYLDNANRKVNLKANV 170
FTSK VE LLNPL+L+ VE KT+ DKFAAV ILQ YLDN NR + NV
Sbjct: 121 NFTSKCVEALLNPLNLNDRVETKTMTDKFAAVCILQGYLDNMNRALTSADNV 172
>gi|125527821|gb|EAY75935.1| hypothetical protein OsI_03854 [Oryza sativa Indica Group]
Length = 180
Score = 186 bits (471), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 95/168 (56%), Positives = 125/168 (74%), Gaps = 4/168 (2%)
Query: 1 MKYVKPLRLFEQMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTID 60
M+ +K +LF +++ K+ R LGLDVG KYVGL++SD KN+IA PLSVL R K I
Sbjct: 1 MRLLKADQLFRKVIDGGSRKQSRLLGLDVGSKYVGLAVSDDKNRIALPLSVLSRTKTNIS 60
Query: 61 LMAEDFRSLISEFNLEGFIVGYPFNRQ-QNAADAVQVKLFIDDLSATKKLEDMKYAYWNE 119
LMA+DF +L+S+++L GF+VGYPFN Q Q++ +A+QV+L + +L T KL+DM Y YW+E
Sbjct: 61 LMADDFVTLVSKYSLAGFVVGYPFNLQGQSSPNALQVRLLVGELCKTGKLDDMSYTYWDE 120
Query: 120 GFTSK--GVELLLNPLDLH-PVEYKTILDKFAAVGILQEYLDNANRKV 164
FTSK VE LL+PL LH PVE KT+ DKFAAV ILQ YLDN NR++
Sbjct: 121 NFTSKVMCVEALLHPLKLHDPVETKTMTDKFAAVCILQRYLDNMNREL 168
>gi|326514774|dbj|BAJ99748.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 199
Score = 186 bits (471), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 94/172 (54%), Positives = 124/172 (72%), Gaps = 2/172 (1%)
Query: 1 MKYVKPLRLFEQMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTID 60
M+ +K LF ++L+ K+ R LGLDVG KYVGL++SD +N+IA PLSVL R K I+
Sbjct: 13 MRLLKAEELFRKLLEGGSKKKARLLGLDVGSKYVGLAVSDQQNRIALPLSVLGRTKTNIN 72
Query: 61 LMAEDFRSLISEFNLEGFIVGYPFNRQ-QNAADAVQVKLFIDDLSATKKLEDMKYAYWNE 119
LMA+DF++L++ ++L G +VGYPFN Q Q++ DA QV L + +L T KL+D+ Y YW+E
Sbjct: 73 LMADDFKTLVNNYSLAGLVVGYPFNLQGQSSPDASQVSLLVGELCKTGKLDDLSYTYWDE 132
Query: 120 GFTSKGVELLLNPLDLHP-VEYKTILDKFAAVGILQEYLDNANRKVNLKANV 170
FTSK VE LLNPL+L+ VE KT+ DKFAAV ILQ YLDN NR + NV
Sbjct: 133 NFTSKCVEALLNPLNLNDRVETKTMTDKFAAVCILQGYLDNMNRALTSADNV 184
>gi|125572132|gb|EAZ13647.1| hypothetical protein OsJ_03564 [Oryza sativa Japonica Group]
Length = 180
Score = 185 bits (469), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 95/168 (56%), Positives = 125/168 (74%), Gaps = 4/168 (2%)
Query: 1 MKYVKPLRLFEQMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTID 60
M+ +K +LF +++ K+ R LGLDVG KYVGL++SD KN+IA PLSVL R K I
Sbjct: 1 MRLLKADQLFRKVIDGGWRKQSRLLGLDVGSKYVGLAVSDDKNRIALPLSVLSRTKTNIS 60
Query: 61 LMAEDFRSLISEFNLEGFIVGYPFNRQ-QNAADAVQVKLFIDDLSATKKLEDMKYAYWNE 119
LMA+DF +L+S+++L GF+VGYPFN Q Q++ +A+QV+L + +L T KL+DM Y YW+E
Sbjct: 61 LMADDFVTLVSKYSLAGFVVGYPFNLQGQSSPNALQVRLLVGELCKTGKLDDMSYTYWDE 120
Query: 120 GFTSK--GVELLLNPLDLH-PVEYKTILDKFAAVGILQEYLDNANRKV 164
FTSK VE LL+PL LH PVE KT+ DKFAAV ILQ YLDN NR++
Sbjct: 121 NFTSKVMCVEALLHPLKLHDPVETKTMTDKFAAVCILQRYLDNMNREL 168
>gi|148909523|gb|ABR17857.1| unknown [Picea sitchensis]
Length = 178
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/182 (45%), Positives = 122/182 (67%), Gaps = 11/182 (6%)
Query: 1 MKYVKPLRLFEQMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTID 60
MKYVK L LF+ + K GR LG+DVGD+YVGL++S+ N+IASP SVL+RK++ ID
Sbjct: 1 MKYVKQLELFQILFKNGKLGTGRLLGMDVGDRYVGLAVSNHLNEIASPHSVLIRKQSNID 60
Query: 61 LMAEDFRSLISEFNLEGFIVGYP-----FNRQQNAADAVQVKLFIDDLSATKKLEDMKYA 115
+ + + L+ F+L GF++GYP F R Q A+QVK+F++ L T + + Y
Sbjct: 61 SITDKLQELVRRFSLVGFVIGYPLPLYHFQRSQ----AMQVKMFVEQLQKTGRFGCLNYT 116
Query: 116 YWNEGFTSKGVELLLNPLDLHPVEYKTILDKFAAVGILQEYLDNANR--KVNLKANVLRP 173
YW+E T++ VE +L PL +HP++ K ++DKFAAVGILQ++LDN K ++++ LRP
Sbjct: 117 YWDERLTTRAVESMLKPLKIHPLQMKHMMDKFAAVGILQDFLDNLQHQAKSCVQSDSLRP 176
Query: 174 II 175
I
Sbjct: 177 TI 178
>gi|219362555|ref|NP_001136992.1| hypothetical protein [Zea mays]
gi|194697900|gb|ACF83034.1| unknown [Zea mays]
gi|414880350|tpg|DAA57481.1| TPA: hypothetical protein ZEAMMB73_010877 [Zea mays]
Length = 174
Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 89/167 (53%), Positives = 120/167 (71%), Gaps = 4/167 (2%)
Query: 1 MKYVKPLRLFEQMLK-RKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTI 59
M+ ++ LF ++L+ +K R LGLDVG KYVG++ISD KN++A PLSVL R K I
Sbjct: 1 MRLLQAEELFRKVLEVGSKNKAARLLGLDVGSKYVGVAISDEKNRVAMPLSVLCRTKTNI 60
Query: 60 DLMAEDFRSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWN 118
+LMA+DF++L+S +++ GF+VGYPF Q A A+QV L +L T KL+D+ YAYW+
Sbjct: 61 NLMADDFKTLVSMYSIAGFVVGYPFKIYGQPCASAIQVSL-AGELCKTGKLDDLPYAYWD 119
Query: 119 EGFTSKGVELLLNPLDLHPV-EYKTILDKFAAVGILQEYLDNANRKV 164
E FTSK VE LL+PL+L + + KT+ DKFAAV ILQ YLDN NRK+
Sbjct: 120 ENFTSKCVEALLHPLNLKDLDDAKTMTDKFAAVCILQGYLDNMNRKL 166
>gi|351725407|ref|NP_001237859.1| uncharacterized protein LOC100305864 [Glycine max]
gi|255626817|gb|ACU13753.1| unknown [Glycine max]
Length = 110
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 70/109 (64%), Positives = 88/109 (80%), Gaps = 1/109 (0%)
Query: 62 MAEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGF 121
MA D SLI++++L+GF++G PF++ Q ++DA+QVK+FID+L TK LE +KYAYWNE F
Sbjct: 1 MASDLESLIAKYSLKGFVIGIPFDKHQVSSDAMQVKVFIDNLCRTKMLEGVKYAYWNESF 60
Query: 122 TSKGVELLLNPLDL-HPVEYKTILDKFAAVGILQEYLDNANRKVNLKAN 169
TSK VELLL PL+L HPV KT+LDKFAAVGILQ YLD NRK+ LKA
Sbjct: 61 TSKNVELLLKPLNLNHPVLSKTMLDKFAAVGILQGYLDFVNRKMKLKAT 109
>gi|224032587|gb|ACN35369.1| unknown [Zea mays]
gi|414880349|tpg|DAA57480.1| TPA: hypothetical protein ZEAMMB73_010877 [Zea mays]
Length = 146
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/118 (55%), Positives = 85/118 (72%), Gaps = 3/118 (2%)
Query: 49 LSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATK 107
SVL R K I+LMA+DF++L+S +++ GF+VGYPF Q A A+QV L +L T
Sbjct: 22 CSVLCRTKTNINLMADDFKTLVSMYSIAGFVVGYPFKIYGQPCASAIQVSL-AGELCKTG 80
Query: 108 KLEDMKYAYWNEGFTSKGVELLLNPLDLHPV-EYKTILDKFAAVGILQEYLDNANRKV 164
KL+D+ YAYW+E FTSK VE LL+PL+L + + KT+ DKFAAV ILQ YLDN NRK+
Sbjct: 81 KLDDLPYAYWDENFTSKCVEALLHPLNLKDLDDAKTMTDKFAAVCILQGYLDNMNRKL 138
>gi|168054242|ref|XP_001779541.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669022|gb|EDQ55617.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 171
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 94/167 (56%), Gaps = 14/167 (8%)
Query: 1 MKYVKPLRLFEQMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTID 60
M+ V +LF+ ++S GR LGLDVG + +GL++SDPK +IASP SV+ R T
Sbjct: 1 MELVSLKQLFQ-----RLSSGGRLLGLDVGSRNIGLAVSDPKCRIASPHSVMYRSNTTTL 55
Query: 61 LMAEDFRSLISEFNLEGFIVGYP-----FNRQQNAADAVQVKLFIDDLSATKKLEDMKYA 115
SL+ E N+ G ++GYP F +Q A QVKLF +L + + ++ Y
Sbjct: 56 KNISRLESLVQEMNITGLVIGYPLELTGFQGKQGA----QVKLFAKELQMSGRFPNLAYV 111
Query: 116 YWNEGFTSKGVELLLNPLDLHPVEYKTILDKFAAVGILQEYLDNANR 162
YW+E TS V ++ +D+ K I+DK +A+ ILQ LD+ +R
Sbjct: 112 YWDERLTSVAVTNVIGSMDITGRRRKNIVDKMSALCILQGCLDSLSR 158
>gi|296445897|ref|ZP_06887848.1| Holliday junction resolvase YqgF [Methylosinus trichosporium OB3b]
gi|296256565|gb|EFH03641.1| Holliday junction resolvase YqgF [Methylosinus trichosporium OB3b]
Length = 160
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 78/143 (54%), Gaps = 6/143 (4%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV 80
+GR +GLDVG K +GL++SD + ++ASPL + R K T D AE +L+++F++ IV
Sbjct: 18 KGRLMGLDVGTKTIGLALSDVERRLASPLETIRRGKFTSD--AERLGALVAQFDIAALIV 75
Query: 81 GYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
G P N + Q + F+ +L A L +YA+W+E ++ V L D +
Sbjct: 76 GLPLNMDGSEGPRAQATRAFMRNLGARFAL---RYAFWDERLSTAAVTRELLAQDASRAK 132
Query: 140 YKTILDKFAAVGILQEYLDNANR 162
++D+ AA ILQ LD R
Sbjct: 133 RAAVVDRMAAAYILQGALDRLRR 155
>gi|262277133|ref|ZP_06054926.1| conserved hypothetical protein [alpha proteobacterium HIMB114]
gi|262224236|gb|EEY74695.1| conserved hypothetical protein [alpha proteobacterium HIMB114]
Length = 156
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 79/147 (53%), Gaps = 6/147 (4%)
Query: 17 KVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLE 76
KV K R LG+D G K +GLS+SDP KIA+P +++ KK E+ ++I E+ ++
Sbjct: 15 KVGKNSRILGIDPGKKNIGLSVSDPNQKIATPFKIIVMKK--FKQFLEELNNIIREYEIK 72
Query: 77 GFIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDL 135
G ++G P N + Q + F ++S KL W+E +S+G L+ LD+
Sbjct: 73 GIVIGNPINMDGTSGPRSQSARDFAQNISKNTKLP---ITLWDERLSSEGAFNLMGDLDI 129
Query: 136 HPVEYKTILDKFAAVGILQEYLDNANR 162
+ + LD+ AA ILQ YLD N+
Sbjct: 130 NSSKKSKNLDQHAAAFILQGYLDFLNK 156
>gi|406989714|gb|EKE09459.1| hypothetical protein ACD_16C00166G0006 [uncultured bacterium]
Length = 158
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 84/162 (51%), Gaps = 12/162 (7%)
Query: 6 PLRLFEQMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAED 65
PL +F+ K KRGR LG D+G+K +GL++SD KIASP VL R K ED
Sbjct: 2 PLLIFDDFTKVSFEKRGRLLGCDLGEKTIGLALSDVGLKIASPFQVLQRTK-----WRED 56
Query: 66 FRSLISEFN---LEGFIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGF 121
++L+ F+ + G +VG P N + Q V+ F ++ + L D+ W+E
Sbjct: 57 SKALLKIFDDYLIMGIVVGLPLNMDGSEGPRCQSVRQFSQNILS---LRDLPLCLWDERL 113
Query: 122 TSKGVELLLNPLDLHPVEYKTILDKFAAVGILQEYLDNANRK 163
++ V +L DL + I+DK AA ILQ +LD N K
Sbjct: 114 STVAVTRILLEADLSRKKRSKIIDKLAASYILQGFLDAFNWK 155
>gi|182678862|ref|YP_001833008.1| Holliday junction resolvase-like protein [Beijerinckia indica
subsp. indica ATCC 9039]
gi|226725489|sp|B2IEC1.1|RUVX_BEII9 RecName: Full=Putative Holliday junction resolvase
gi|182634745|gb|ACB95519.1| Holliday junction resolvase YqgF [Beijerinckia indica subsp. indica
ATCC 9039]
Length = 165
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 77/147 (52%), Gaps = 6/147 (4%)
Query: 14 LKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEF 73
LK + R R +G+D+G K +GLS+SD + +IA+PL + R K T D AE +L +F
Sbjct: 11 LKPLLGPRQRLIGIDLGTKTIGLSLSDVERRIATPLETIRRTKFTKD--AERLLALADQF 68
Query: 74 NLEGFIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNP 132
++ F++G P N +A VQ + F+ LS L + YW+E ++ V L
Sbjct: 69 DVAAFVIGLPLNMDGSAGPRVQATEAFVRSLSG---LTSRPFCYWDERLSTAAVTRDLIA 125
Query: 133 LDLHPVEYKTILDKFAAVGILQEYLDN 159
D + ++DK AA ILQ LD
Sbjct: 126 QDASRAKRAAVVDKLAAAFILQGALDR 152
>gi|359407683|ref|ZP_09200158.1| conserved hypothetical protein TIGR00250 [SAR116 cluster alpha
proteobacterium HIMB100]
gi|356677316|gb|EHI49662.1| conserved hypothetical protein TIGR00250 [SAR116 cluster alpha
proteobacterium HIMB100]
Length = 139
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 75/139 (53%), Gaps = 10/139 (7%)
Query: 24 FLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYP 83
LGLD+G K +GL+I+DP+ +ASP VL RKK T D AE LI E N+ G ++G+P
Sbjct: 1 MLGLDIGKKTIGLAIADPRTNVASPQPVLWRKKFTPD--AEHLIHLIQEQNVGGLVLGWP 58
Query: 84 FNRQQNA---ADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
N A D+V+ D A +L D+ ++ +E +++ VE + D+ +
Sbjct: 59 LNMDGTAGPRCDSVR-----DFAHAFLRLHDIAISFQDERMSTQAVERNMIAADMTRAKR 113
Query: 141 KTILDKFAAVGILQEYLDN 159
D AAV ILQ LD+
Sbjct: 114 AVRRDSLAAVWILQSALDS 132
>gi|118597226|sp|Q5NPF1.2|RUVX_ZYMMO RecName: Full=Putative Holliday junction resolvase
Length = 163
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 83/160 (51%), Gaps = 11/160 (6%)
Query: 1 MKYVKPLRLFEQMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTID 60
+K + LRLF++ L RK GR GLDVG K +GL++ D + IASP + RKK T+D
Sbjct: 10 LKKQEELRLFQEALPRK----GRLAGLDVGTKTIGLALCDSQWIIASPAETIRRKKFTLD 65
Query: 61 LMAEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNE 119
L E R + + ++G ++G P N + + Q V+ F +++ + W+E
Sbjct: 66 L--ELLRQFVEKQQVKGLVIGLPLNLDGSDSPRTQSVRAFAKNVAPL----SLPVLMWDE 119
Query: 120 GFTSKGVELLLNPLDLHPVEYKTILDKFAAVGILQEYLDN 159
+++K V L D ++DK AA ILQ +D+
Sbjct: 120 RWSTKAVTRTLLEADASRARRSEVVDKMAAAYILQGAIDS 159
>gi|414173915|ref|ZP_11428542.1| RNAse H-fold protein YqgF [Afipia broomeae ATCC 49717]
gi|410890549|gb|EKS38348.1| RNAse H-fold protein YqgF [Afipia broomeae ATCC 49717]
Length = 163
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 6/139 (4%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV 80
RG +GLD+G K +G+++SDP K+A+ + + RK T D A+ SL +E N+ GFI+
Sbjct: 18 RGALIGLDLGTKTIGVAVSDPDRKLATGIETIQRKTFTAD--AKRLLSLSAERNVVGFIL 75
Query: 81 GYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
G P N + Q + F + + KL D+ W+E ++ VE L +D+ +
Sbjct: 76 GLPINMDGSEGPRAQSTRAFARNFA---KLTDLAIGLWDERLSTVAVERELIDMDMSRAK 132
Query: 140 YKTILDKFAAVGILQEYLD 158
++D+ AA+ ILQ LD
Sbjct: 133 RAKVIDEHAAIFILQGALD 151
>gi|56551681|ref|YP_162520.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis
ZM4]
gi|260752737|ref|YP_003225630.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|384411438|ref|YP_005620803.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|397676390|ref|YP_006517928.1| Holliday junction resolvase [Zymomonas mobilis subsp. mobilis ATCC
29191]
gi|56543255|gb|AAV89409.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis
ZM4]
gi|258552100|gb|ACV75046.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|335931812|gb|AEH62352.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|395397079|gb|AFN56406.1| Holliday junction resolvase [Zymomonas mobilis subsp. mobilis ATCC
29191]
Length = 179
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 83/160 (51%), Gaps = 11/160 (6%)
Query: 1 MKYVKPLRLFEQMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTID 60
+K + LRLF++ L RK GR GLDVG K +GL++ D + IASP + RKK T+D
Sbjct: 26 LKKQEELRLFQEALPRK----GRLAGLDVGTKTIGLALCDSQWIIASPAETIRRKKFTLD 81
Query: 61 LMAEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNE 119
L E R + + ++G ++G P N + + Q V+ F +++ + W+E
Sbjct: 82 L--ELLRQFVEKQQVKGLVIGLPLNLDGSDSPRTQSVRAFAKNVAPLS----LPVLMWDE 135
Query: 120 GFTSKGVELLLNPLDLHPVEYKTILDKFAAVGILQEYLDN 159
+++K V L D ++DK AA ILQ +D+
Sbjct: 136 RWSTKAVTRTLLEADASRARRSEVVDKMAAAYILQGAIDS 175
>gi|407769482|ref|ZP_11116857.1| putative Holliday junction resolvase [Thalassospira xiamenensis M-5
= DSM 17429]
gi|407287404|gb|EKF12885.1| putative Holliday junction resolvase [Thalassospira xiamenensis M-5
= DSM 17429]
Length = 176
Score = 79.0 bits (193), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 87/160 (54%), Gaps = 7/160 (4%)
Query: 12 QMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLIS 71
Q L R +S R LGLD+G K +G+++SD +IASP S++ RKK T D+ + ++++
Sbjct: 7 QELLRFLSPAARVLGLDLGTKTIGVALSDVGLQIASPYSLISRKKFTRDI--AELSAIVT 64
Query: 72 EFNLEGFIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LL 129
+ N+ G I+G+P A V F+D++ + D+ W+E ++ VE +L
Sbjct: 65 KQNVGGIIIGFPRELDGMIGKACHRVYAFVDEM---QNYIDLPILLWDERLSTNAVERIL 121
Query: 130 LNPLDLHPVEYKTILDKFAAVGILQEYLDNANRKVNLKAN 169
+ +D+ ++DK AA ILQ LDN N + AN
Sbjct: 122 IEDVDMTRKRRAQVVDKTAAAYILQGALDNLNLHTDPGAN 161
>gi|407774695|ref|ZP_11121992.1| Holliday junction resolvase YqgF [Thalassospira profundimaris
WP0211]
gi|407282177|gb|EKF07736.1| Holliday junction resolvase YqgF [Thalassospira profundimaris
WP0211]
Length = 174
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 85/160 (53%), Gaps = 7/160 (4%)
Query: 12 QMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLIS 71
Q L R + R LGLD+G K +G+++SD +IASP ++ RKK T D+ S+I
Sbjct: 7 QELLRFLPPAARVLGLDLGTKTIGVALSDVGLQIASPYELISRKKFTRDIA--QLSSIID 64
Query: 72 EFNLEGFIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LL 129
+ N+ G I+G+P + A V FID++ +K D+ W+E ++ VE +L
Sbjct: 65 KQNVGGIIIGFPRELDGSIGKACHRVYAFIDEM---EKYIDLPVLMWDERLSTNAVERIL 121
Query: 130 LNPLDLHPVEYKTILDKFAAVGILQEYLDNANRKVNLKAN 169
+ +D+ ++DK AA ILQ LD+ NR + N
Sbjct: 122 IEEVDMTRKRRAEVVDKTAAAYILQGALDHLNRHTDPGEN 161
>gi|118590189|ref|ZP_01547592.1| Putative Holliday junction resolvase [Stappia aggregata IAM 12614]
gi|118437161|gb|EAV43799.1| Putative Holliday junction resolvase [Stappia aggregata IAM 12614]
Length = 162
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 75/142 (52%), Gaps = 6/142 (4%)
Query: 18 VSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEG 77
V R R +GLD+G K +GL++SD IASP+ + RKK T+D AE ++ ++ + G
Sbjct: 16 VPARTRLIGLDLGTKTIGLALSDLGLGIASPMETIRRKKFTLD--AEQLLTICAKQGVGG 73
Query: 78 FIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH 136
++G P N + Q + F+ +LS + D+ YW+E ++ V L D
Sbjct: 74 IVLGLPLNMDGSEGPRAQATRAFVRNLS---QKTDLPITYWDERLSTAAVTRTLLEADTS 130
Query: 137 PVEYKTILDKFAAVGILQEYLD 158
+ ++DK AA ILQ +LD
Sbjct: 131 RAKRADVVDKMAAAYILQGFLD 152
>gi|92117802|ref|YP_577531.1| Holliday junction resolvase-like protein [Nitrobacter hamburgensis
X14]
gi|91800696|gb|ABE63071.1| Holliday junction resolvase YqgF [Nitrobacter hamburgensis X14]
Length = 168
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 75/140 (53%), Gaps = 6/140 (4%)
Query: 20 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFI 79
+RG +GLD+G K +G+++SDP ++A+ + L RK T D A ++ E N GF+
Sbjct: 22 ERGALVGLDLGTKTIGVAVSDPDRRLATGVETLQRKTFTAD--AARLLAIAGERNAAGFV 79
Query: 80 VGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
+G P N + Q + F +L+ +L D+ W+E ++ VE L +D+
Sbjct: 80 LGLPINMDGSEGPRAQSTRAFARNLA---RLTDLAIGLWDERLSTVAVERELIGMDMSRA 136
Query: 139 EYKTILDKFAAVGILQEYLD 158
+ ++D+ AA+ ILQ LD
Sbjct: 137 KRAKVIDEHAAIFILQGALD 156
>gi|118597217|sp|Q1QL26.2|RUVX_NITHX RecName: Full=Putative Holliday junction resolvase
Length = 163
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 75/140 (53%), Gaps = 6/140 (4%)
Query: 20 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFI 79
+RG +GLD+G K +G+++SDP ++A+ + L RK T D A ++ E N GF+
Sbjct: 17 ERGALVGLDLGTKTIGVAVSDPDRRLATGVETLQRKTFTAD--AARLLAIAGERNAAGFV 74
Query: 80 VGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
+G P N + Q + F +L+ +L D+ W+E ++ VE L +D+
Sbjct: 75 LGLPINMDGSEGPRAQSTRAFARNLA---RLTDLAIGLWDERLSTVAVERELIGMDMSRA 131
Query: 139 EYKTILDKFAAVGILQEYLD 158
+ ++D+ AA+ ILQ LD
Sbjct: 132 KRAKVIDEHAAIFILQGALD 151
>gi|334341673|ref|YP_004546653.1| Holliday junction resolvase YqgF [Desulfotomaculum ruminis DSM
2154]
gi|334093027|gb|AEG61367.1| Holliday junction resolvase YqgF [Desulfotomaculum ruminis DSM
2154]
Length = 138
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 78/144 (54%), Gaps = 11/144 (7%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSL---ISEFNLEGFI 79
R +GLDVGDK +G+++SDP A L V +R+KN I EDF+ L I E+ +E +
Sbjct: 2 RIMGLDVGDKTIGVALSDPMGWTAQGLEV-IRRKNDIQ---EDFQRLLEIIREYGVESIL 57
Query: 80 VGYPFNRQQN-AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
VG P N +V+ F++ L KK ++ W+E ++ E +L D+
Sbjct: 58 VGLPKNMNGTIGPQGEKVQAFVEQL---KKEINLPVKTWDERLSTVAAEKVLLQADVSRS 114
Query: 139 EYKTILDKFAAVGILQEYLDNANR 162
+ K ++DK AA ILQ YLD+ +
Sbjct: 115 KRKKVIDKMAAAVILQGYLDSGAK 138
>gi|402852003|ref|ZP_10900114.1| Putative Holliday junction resolvase [Rhodovulum sp. PH10]
gi|402497722|gb|EJW09523.1| Putative Holliday junction resolvase [Rhodovulum sp. PH10]
Length = 170
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 76/142 (53%), Gaps = 6/142 (4%)
Query: 14 LKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEF 73
L + +RG +GLD+GDK +G+++SDP ++A+ + ++RK+ T D A L +E
Sbjct: 11 LSPHLPQRGALIGLDLGDKTIGVAVSDPDRRLATGVETVMRKRFTED--AARVLKLAAER 68
Query: 74 NLEGFIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNP 132
N+ GF++G P N Q + F +L+ KL + W+E ++ VE L
Sbjct: 69 NVVGFVLGLPLNMNGTEGPRAQSTRAFARNLA---KLTALPIGLWDERLSTAAVERELIA 125
Query: 133 LDLHPVEYKTILDKFAAVGILQ 154
D + K ++D+ AA+ ILQ
Sbjct: 126 ADASRAKRKAVIDQHAAIFILQ 147
>gi|75676194|ref|YP_318615.1| Holliday junction resolvase-like protein [Nitrobacter winogradskyi
Nb-255]
gi|146325584|sp|Q3SR28.1|RUVX_NITWN RecName: Full=Putative Holliday junction resolvase
gi|74421064|gb|ABA05263.1| Holliday junction resolvase YqgF [Nitrobacter winogradskyi Nb-255]
Length = 163
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 72/140 (51%), Gaps = 6/140 (4%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV 80
RG +GLD+G K +G+++SDP ++A+ + + RK T D A ++ E EGFI+
Sbjct: 18 RGALVGLDLGTKTIGVAVSDPDRRLATGVETIRRKTFTAD--AARLLAIAGERRAEGFIL 75
Query: 81 GYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
G P N + Q + F +L+ +L D W+E ++ VE L LD+
Sbjct: 76 GLPINMDGSEGPRAQSTRAFARNLA---RLTDFAIGLWDERLSTAAVERELIGLDMSRAR 132
Query: 140 YKTILDKFAAVGILQEYLDN 159
++D+ AA+ ILQ LD
Sbjct: 133 RAKVIDEHAAIFILQGALDR 152
>gi|254504549|ref|ZP_05116700.1| conserved hypothetical protein TIGR00250 [Labrenzia alexandrii
DFL-11]
gi|222440620|gb|EEE47299.1| conserved hypothetical protein TIGR00250 [Labrenzia alexandrii
DFL-11]
Length = 161
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 72/142 (50%), Gaps = 6/142 (4%)
Query: 18 VSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEG 77
V R R +GLD+G K +GL++SD IASP+ + RKK T+D AE + +E + G
Sbjct: 16 VPDRTRLIGLDLGTKTIGLALSDLGRGIASPMETIRRKKFTLD--AEQLLKICNEQGVGG 73
Query: 78 FIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH 136
++G P N VQ + F +L+ D+ +W+E ++ V L D
Sbjct: 74 LVLGLPLNMDGTEGPRVQATRAFTRNLAPKT---DLPMTFWDERLSTAAVTRTLLEADSS 130
Query: 137 PVEYKTILDKFAAVGILQEYLD 158
+ ++DK AA ILQ +LD
Sbjct: 131 RAKRAEVVDKMAAAYILQGFLD 152
>gi|390935076|ref|YP_006392581.1| Holliday junction resolvase [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
gi|389570577|gb|AFK86982.1| Holliday junction resolvase [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
Length = 140
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 74/137 (54%), Gaps = 5/137 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVGDK +G+++SDP IA + + R+ D++ + + +I F +E ++G+
Sbjct: 2 RTIGLDVGDKTIGIAVSDPSGLIAQGIKTIRRESLDNDIV--EIKKIIDAFKVEEIVIGF 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGV-ELLLNPLDLHPVEYK 141
P N N Q + ID + KK D+ W+E T+ V +L+ D+ + K
Sbjct: 60 PKN--MNGTIGTQGQKVIDFVEHLKKEIDLPIMLWDERLTTVEVNRMLVESADMRRDKRK 117
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 118 KVIDKLAATIILQGYLD 134
>gi|404370847|ref|ZP_10976164.1| putative Holliday junction resolvase [Clostridium sp. 7_2_43FAA]
gi|226913029|gb|EEH98230.1| putative Holliday junction resolvase [Clostridium sp. 7_2_43FAA]
Length = 138
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 73/141 (51%), Gaps = 4/141 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K +G++ISDP A ++ + R K D+ E+ + L E+++E ++G
Sbjct: 2 RILGLDVGSKTIGVAISDPLGWTAQGITTIRRSKKEQDI--EEIKKLCKEYSVETIVIGL 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N ++ + L + ++ K+ +K W+E T+ + DL + K
Sbjct: 60 PKNMNGTIGESGERVLELSEI--IKEATGIKVEMWDERLTTVAAHKAMLEADLSRGKRKK 117
Query: 143 ILDKFAAVGILQEYLDNANRK 163
I+DK AA ILQ YLD + K
Sbjct: 118 IVDKIAATYILQGYLDRLSMK 138
>gi|85716409|ref|ZP_01047381.1| Holliday junction resolvase YqgF [Nitrobacter sp. Nb-311A]
gi|85696766|gb|EAQ34652.1| Holliday junction resolvase YqgF [Nitrobacter sp. Nb-311A]
Length = 166
Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 75/141 (53%), Gaps = 6/141 (4%)
Query: 20 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFI 79
+RG +GLD+G + +G+++SDP ++A+ + + RK T D A ++ E + +GFI
Sbjct: 17 ERGALVGLDLGTRTIGVAVSDPDRRLATGVETIRRKAFTAD--AARLLAIAGERHAKGFI 74
Query: 80 VGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
+G P N + Q + F +L+ +L D+ W+E ++ VE L LD+
Sbjct: 75 LGLPINMDGSEGPRAQSTRAFARNLA---RLTDLAIGLWDERLSTAAVERELIGLDMSRA 131
Query: 139 EYKTILDKFAAVGILQEYLDN 159
++D+ AA+ ILQ LD
Sbjct: 132 RRARVIDEHAAIFILQGALDR 152
>gi|414154590|ref|ZP_11410908.1| Holliday junction resolvase [Desulfotomaculum hydrothermale Lam5 =
DSM 18033]
gi|411453987|emb|CCO08812.1| Holliday junction resolvase [Desulfotomaculum hydrothermale Lam5 =
DSM 18033]
Length = 137
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 71/137 (51%), Gaps = 6/137 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG+K +G+++SDP A L V+ R+ N D + +I E+ +E +VG
Sbjct: 2 RIMGLDVGEKNIGVALSDPMGWTAQGLEVIRRQHNDKDFAR--LQEIIKEYGVEKILVGL 59
Query: 83 PFNRQQN-AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N +V FI++L A D+ W+E +S E LL D+ + K
Sbjct: 60 PKNMNDTLGPQGEKVLAFIEELKARV---DLPIQTWDERLSSVAAEKLLIQADVSRKKRK 116
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 117 QVIDKLAAAVILQCYLD 133
>gi|328543472|ref|YP_004303581.1| endonuclease [Polymorphum gilvum SL003B-26A1]
gi|326413216|gb|ADZ70279.1| Predicted endonuclease involved in recombination [Polymorphum
gilvum SL003B-26A1]
Length = 166
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 71/138 (51%), Gaps = 6/138 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLD+G + +GL++SD IASPL + R+K T+D AE + +E + G ++G
Sbjct: 21 RLIGLDLGTRTIGLALSDLGRGIASPLETIRRRKFTLD--AEQLLKICAEHRVGGLVLGL 78
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + VQ + F +L+ + D+ YW+E ++ V L D
Sbjct: 79 PLNMDGSEGPRVQATRAFARNLA---EKTDLPITYWDERLSTAAVTRTLIEADRSRARRA 135
Query: 142 TILDKFAAVGILQEYLDN 159
++DK AA ILQ +LD
Sbjct: 136 ELVDKMAAAYILQGFLDR 153
>gi|254456227|ref|ZP_05069656.1| conserved hypothetical protein TIGR00250 [Candidatus Pelagibacter
sp. HTCC7211]
gi|207083229|gb|EDZ60655.1| conserved hypothetical protein TIGR00250 [Candidatus Pelagibacter
sp. HTCC7211]
Length = 151
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 81/146 (55%), Gaps = 6/146 (4%)
Query: 14 LKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEF 73
LK+K S+ R +GLD+G K +G+SI D K IA+P + K NT +L+ E + +I E+
Sbjct: 7 LKKKQSETSRLIGLDLGSKRIGVSICDEKQSIATPFKT-INKTNTNELINE-LKKIIEEY 64
Query: 74 NLEGFIVGYPFNRQQNAADAVQVKLFIDDLSAT-KKLEDMKYAYWNEGFTSKGVELLLNP 132
+++G +VG P N + Q ++D+S K D+ W+E ++ G L +
Sbjct: 65 DIKGIVVGNPINMDGTLGRSSQ---SVNDVSDNIDKAIDIDVCLWDERLSTVGAFNLSSQ 121
Query: 133 LDLHPVEYKTILDKFAAVGILQEYLD 158
LD++ + + +D+ AA ILQ +D
Sbjct: 122 LDVNVSKREKNIDQNAAAFILQGAID 147
>gi|288958770|ref|YP_003449111.1| holliday junction resolvase [Azospirillum sp. B510]
gi|288911078|dbj|BAI72567.1| holliday junction resolvase [Azospirillum sp. B510]
Length = 178
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 77/149 (51%), Gaps = 6/149 (4%)
Query: 14 LKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEF 73
L ++ + R LGLDVG K VGL+++DP +ASP+ L R K T D A + I ++
Sbjct: 8 LAARLGRNQRLLGLDVGTKTVGLAVADPGLIVASPIGTLKRTKFTQD--ARELGKTIRDY 65
Query: 74 NLEGFIVGYPFNRQQNAA-DAVQVKLFIDDLSATKKL--EDMKYAYWNEGFTSKGVE-LL 129
+ G +VG P N + A V+ F ++L L + + A+W+E ++ VE +
Sbjct: 66 GIGGLVVGLPLNMDGSEGPRAESVRAFANNLLERSDLLGWEAEIAFWDERLSTSAVERFM 125
Query: 130 LNPLDLHPVEYKTILDKFAAVGILQEYLD 158
+ D+ ++DK AA ILQ LD
Sbjct: 126 IGEADMTRKRRDEVVDKMAAAYILQGALD 154
>gi|344925145|ref|ZP_08778606.1| Holliday junction resolvase YqgF [Candidatus Odyssella
thessalonicensis L13]
Length = 156
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 79/154 (51%), Gaps = 7/154 (4%)
Query: 6 PLRLFEQMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAED 65
P+ E+ K K SKR R LGLDVG+K VG+++SD IASPL++L R T D ++
Sbjct: 2 PIIFQEEFFKLK-SKRKRALGLDVGNKTVGMAVSDATWLIASPLTLLKRSNLTAD--SKS 58
Query: 66 FRSLISEFNLEGFIVGYPFNRQ-QNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSK 124
S+ ++++ + G P N A V FID L K++D+ W+E ++
Sbjct: 59 LFSIYQQYDVCCIVAGLPLNMNGTQGPQAEVVHTFIDFL---LKIQDIPVFLWDERLSTV 115
Query: 125 GVELLLNPLDLHPVEYKTILDKFAAVGILQEYLD 158
V L DL ++DK AA ILQ LD
Sbjct: 116 AVTRTLLDADLSRKRRSEVIDKMAATYILQGSLD 149
>gi|217976928|ref|YP_002361075.1| Holliday junction resolvase-like protein [Methylocella silvestris
BL2]
gi|254767519|sp|B8EPC5.1|RUVX_METSB RecName: Full=Putative Holliday junction resolvase
gi|217502304|gb|ACK49713.1| Holliday junction resolvase YqgF [Methylocella silvestris BL2]
Length = 161
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 76/150 (50%), Gaps = 6/150 (4%)
Query: 14 LKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEF 73
L +V R R +G+D+G K +GL++SD + +IA+PL + R K + D A L +F
Sbjct: 11 LPARVGPRQRLIGIDLGTKTIGLALSDVERRIATPLETIQRIKFSKD--AVRLIELAEKF 68
Query: 74 NLEGFIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNP 132
+ I+G P N + VQ + F+ LSA L + YW+E ++ V L
Sbjct: 69 DAGALIIGLPLNMDGSQGPRVQATRAFVRSLSA---LVSKPFVYWDERLSTAAVTRSLID 125
Query: 133 LDLHPVEYKTILDKFAAVGILQEYLDNANR 162
D+ ++ ++DK AA ILQ LD R
Sbjct: 126 QDVSRLKRAEVVDKMAAAYILQGVLDRLRR 155
>gi|289578245|ref|YP_003476872.1| Holliday junction resolvase YqgF [Thermoanaerobacter italicus Ab9]
gi|289527958|gb|ADD02310.1| Holliday junction resolvase YqgF [Thermoanaerobacter italicus Ab9]
Length = 139
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 74/143 (51%), Gaps = 7/143 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVGDK +G++ISD IA L+ + R N D E + +I+E+ + IVG
Sbjct: 2 RIMGLDVGDKTIGIAISDLSGTIAQGLTTIKRSSNKKDF--ERIKQIINEYEVGMIIVGL 59
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEY 140
P N Q V F++ L KK + W+E T+ E +L+ D+ +
Sbjct: 60 PKNMNGTLGPQGQKVVRFVEHL---KKAFSIPIILWDERLTTVEAERVLIEKADISRAKR 116
Query: 141 KTILDKFAAVGILQEYLDNANRK 163
K ++DK AAV ILQ YLD+ K
Sbjct: 117 KEVIDKLAAVLILQNYLDSQKNK 139
>gi|156743642|ref|YP_001433771.1| Holliday junction resolvase YqgF [Roseiflexus castenholzii DSM
13941]
gi|156234970|gb|ABU59753.1| Holliday junction resolvase YqgF [Roseiflexus castenholzii DSM
13941]
Length = 146
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 82/150 (54%), Gaps = 7/150 (4%)
Query: 17 KVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLE 76
K+ + GR + LDVG++ +G+++SDP +A+PL+ + K L + SLI E ++
Sbjct: 2 KIDEPGRVMALDVGEQRIGVALSDPTRTLATPLTTIRAKPRATAL--KRIASLIREHDVA 59
Query: 77 GFIVGYPFNRQQNAA-DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDL 135
+VG P + A V+ F+++L ++ + + +E T+ E ++ L L
Sbjct: 60 ALVVGLPLTMSGDVGPQAALVQQFVEEL---RRAIAIPLTFVDERLTTVAAERMMIDLKL 116
Query: 136 HPVEYKTILDKFAAVGILQEYLDNANRKVN 165
P + K +D+ AA ILQ++LD A+R+ +
Sbjct: 117 KPEQRKARIDEVAASIILQDFLD-AHRQAS 145
>gi|23015713|ref|ZP_00055482.1| COG0816: Predicted endonuclease involved in recombination (possible
Holliday junction resolvase in Mycoplasmas and B.
subtilis) [Magnetospirillum magnetotacticum MS-1]
Length = 159
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 78/160 (48%), Gaps = 11/160 (6%)
Query: 1 MKYVKPLRLFEQMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTID 60
M + P+ L + S+ R LGLD+G K +GL++SD IA+P + R K T D
Sbjct: 5 MPILSPVELLGSL-----SRDQRLLGLDLGSKTIGLALSDVSRTIATPFDTIRRTKFTKD 59
Query: 61 LMAEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNE 119
AE +++ + ++ G ++G P Q V+ F +L+ +L DM AYW+E
Sbjct: 60 --AEQLLAIVDKQDVGGLVLGLPVEMDGFEGPRCQSVRSFAANLA---RLRDMPIAYWDE 114
Query: 120 GFTSKGVELLLNPLDLHPVEYKTILDKFAAVGILQEYLDN 159
++ V L D ++DK AA ILQ LDN
Sbjct: 115 RLSTSAVTRTLLEADSSRKRRAEVVDKMAAAYILQGLLDN 154
>gi|134298642|ref|YP_001112138.1| Holliday junction resolvase YqgF [Desulfotomaculum reducens MI-1]
gi|172044263|sp|A4J2L0.1|RUVX_DESRM RecName: Full=Putative Holliday junction resolvase
gi|134051342|gb|ABO49313.1| Holliday junction resolvase YqgF [Desulfotomaculum reducens MI-1]
Length = 137
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 75/140 (53%), Gaps = 4/140 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVGDK +G+++SDP A L V+ +++TI+ +ISE+++E +VG
Sbjct: 2 RIMGLDVGDKTIGVALSDPLGWTAQGLEVI--RRDTIEKDMNRLAQIISEYSVERILVGM 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N N Q + + + K+ D+ W+E ++ E +L D+ + K
Sbjct: 60 PKN--MNGTVGSQGEKVLAFIEKVKEKIDLPIKTWDERLSTVAAEKMLIQADVSRGKRKK 117
Query: 143 ILDKFAAVGILQEYLDNANR 162
++DK AA ILQ YLD+ +
Sbjct: 118 VIDKMAAAVILQGYLDSGAK 137
>gi|374292327|ref|YP_005039362.1| putative Holliday junction resolvase [Azospirillum lipoferum 4B]
gi|357424266|emb|CBS87133.1| putative Holliday junction resolvase [Azospirillum lipoferum 4B]
Length = 187
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 75/149 (50%), Gaps = 6/149 (4%)
Query: 14 LKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEF 73
L ++ K R LGLDVG K VGL+++DP +ASP+ L R K T D A + I ++
Sbjct: 8 LAARLGKNQRLLGLDVGTKTVGLAVADPGLIVASPIGTLKRTKFTQD--ARELGKTIRDY 65
Query: 74 NLEGFIVGYPFNRQ-QNAADAVQVKLFIDDLSATKKL--EDMKYAYWNEGFTSKGVE-LL 129
+ G +VG P N A V+ F +L L + + A+W+E ++ VE +
Sbjct: 66 GIGGLVVGLPLNMDGTEGPRAESVRAFAKNLLERPDLLGWEAEIAFWDERLSTSAVERFM 125
Query: 130 LNPLDLHPVEYKTILDKFAAVGILQEYLD 158
+ D+ ++DK AA ILQ LD
Sbjct: 126 IGEADMTRKRRDEVVDKMAAAYILQGALD 154
>gi|297544525|ref|YP_003676827.1| Holliday junction resolvase YqgF [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296842300|gb|ADH60816.1| Holliday junction resolvase YqgF [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 139
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 74/143 (51%), Gaps = 7/143 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVGDK +G++ISD IA L+ + R N D E + +I+E+ + IVG
Sbjct: 2 RIMGLDVGDKTIGIAISDLSGTIAQGLTTIKRSSNKKDF--ERIKQIINEYEVGMIIVGL 59
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEY 140
P N Q V F++ L KK + W+E T+ E +L+ D+ +
Sbjct: 60 PKNMNGTLGPQGQKVVRFVEHL---KKAFSIPIILWDERLTTVEAERVLIEKADISRAKR 116
Query: 141 KTILDKFAAVGILQEYLDNANRK 163
K ++DK AA+ ILQ YLD+ K
Sbjct: 117 KEVIDKLAAILILQNYLDSQKNK 139
>gi|312115158|ref|YP_004012754.1| Holliday junction resolvase YqgF [Rhodomicrobium vannielii ATCC
17100]
gi|311220287|gb|ADP71655.1| Holliday junction resolvase YqgF [Rhodomicrobium vannielii ATCC
17100]
Length = 156
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 66/140 (47%), Gaps = 6/140 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VGL++SD +IA+P + R K T D A + + G +VG
Sbjct: 20 RLMGLDVGTKTVGLALSDVMRQIATPFDTIRRTKFTAD--AVKLLAHCKAQGVGGLVVGL 77
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N Q + F+ L A L DM A+W+E ++ E +L D
Sbjct: 78 PVNLDGTEGPRAQSTRAFVRSLGA---LTDMPMAFWDERLSTAAAERVLLEADASRKRRA 134
Query: 142 TILDKFAAVGILQEYLDNAN 161
++DK AA ILQ LD N
Sbjct: 135 EVIDKMAAAYILQGALDRVN 154
>gi|392378546|ref|YP_004985706.1| putative Holliday junction resolvase [Azospirillum brasilense
Sp245]
gi|356880028|emb|CCD00971.1| putative Holliday junction resolvase [Azospirillum brasilense
Sp245]
Length = 191
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 75/149 (50%), Gaps = 6/149 (4%)
Query: 14 LKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEF 73
L ++ + R LGLDVG K VG+++SDP +ASP+ L R K T D A + + ++
Sbjct: 8 LAARLGRGQRLLGLDVGTKTVGMAVSDPNFVVASPIGTLKRTKFTQD--ARELSRTLRDY 65
Query: 74 NLEGFIVGYPFNRQQNAAD-AVQVKLFIDDLSATKKL--EDMKYAYWNEGFTSKGVE-LL 129
+ G ++G P N + A + F +L L D + A+W+E ++ VE +
Sbjct: 66 GIGGLVIGLPLNMDGSEGPRAESTRAFAKNLMERSDLLGWDAEIAFWDERLSTSAVERFM 125
Query: 130 LNPLDLHPVEYKTILDKFAAVGILQEYLD 158
+ D+ ++DK AA ILQ LD
Sbjct: 126 IGEADMTRKRRDEVVDKMAAAYILQGALD 154
>gi|114566022|ref|YP_753176.1| Holliday junction resolvase YqgF [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
gi|122318867|sp|Q0AZP9.1|RUVX_SYNWW RecName: Full=Putative Holliday junction resolvase
gi|114336957|gb|ABI67805.1| Holliday junction resolvase YqgF [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
Length = 141
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 70/140 (50%), Gaps = 6/140 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLD+G+K +G++ SDP A S+L RK DL + L EF +E ++G
Sbjct: 2 RIMGLDLGEKRIGIAFSDPMGWTAQGHSILQRKGLKKDLSY--LQELCQEFQVEKIVLGL 59
Query: 83 PFNRQQNAA-DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N A++ + F L K+ +W+E +SK E +L DL K
Sbjct: 60 PLNMNGTMGPKALETQEFARALQEALKI---PVDFWDERLSSKSAERVLLEADLSRKRRK 116
Query: 142 TILDKFAAVGILQEYLDNAN 161
++DK AAV ILQ YLD +
Sbjct: 117 ELIDKIAAVHILQAYLDGGS 136
>gi|435854731|ref|YP_007316050.1| RNAse H-fold protein YqgF [Halobacteroides halobius DSM 5150]
gi|433671142|gb|AGB41957.1| RNAse H-fold protein YqgF [Halobacteroides halobius DSM 5150]
Length = 135
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 74/140 (52%), Gaps = 10/140 (7%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRK--KNTIDLMAEDFRSLISEFNLEGFIV 80
R +GLDVGDK G+++SDP A +++ + + +D +A SLI ++N+E +V
Sbjct: 2 RIMGLDVGDKRTGVAVSDPLGWTAQGKTIVEEESSQEKLDYIA----SLIDKYNVEKVVV 57
Query: 81 GYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
G P N Q V F+D L T D+ W+E ++K E L DL +
Sbjct: 58 GLPKNMNGTIGPRAQKVLSFVDKLKETI---DLPVITWDERLSTKAAEKTLIDADLSRKK 114
Query: 140 YKTILDKFAAVGILQEYLDN 159
K ++DK AAV ILQ YLD+
Sbjct: 115 RKKVIDKMAAVVILQNYLDS 134
>gi|326390159|ref|ZP_08211720.1| Holliday junction resolvase YqgF [Thermoanaerobacter ethanolicus JW
200]
gi|392941102|ref|ZP_10306746.1| RNAse H-fold protein YqgF [Thermoanaerobacter siderophilus SR4]
gi|325993807|gb|EGD52238.1| Holliday junction resolvase YqgF [Thermoanaerobacter ethanolicus JW
200]
gi|392292852|gb|EIW01296.1| RNAse H-fold protein YqgF [Thermoanaerobacter siderophilus SR4]
Length = 139
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 75/143 (52%), Gaps = 7/143 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVGDK +G++ISD IA L+ + R N D E + +I+E+ + IVG
Sbjct: 2 RIMGLDVGDKTIGVAISDLSGTIAQGLTTIKRSSNKKDF--ERIKQIINEYEVGMIIVGL 59
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEY 140
P N Q V F++ L K+ ++ W+E T+ E +L+ D+ +
Sbjct: 60 PKNMNGTLGPQGQKVVRFVEHL---KEAINIPIILWDERLTTVEAERVLIEKADISRAKR 116
Query: 141 KTILDKFAAVGILQEYLDNANRK 163
K ++DK AAV ILQ YLD+ K
Sbjct: 117 KEVIDKLAAVLILQNYLDSQKNK 139
>gi|433654862|ref|YP_007298570.1| RNAse H-fold protein YqgF [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433293051|gb|AGB18873.1| RNAse H-fold protein YqgF [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 140
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 5/141 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVGDK +G++ISDP IA + + K++ +D ++ +I+ F E +VG+
Sbjct: 2 RTIGLDVGDKTIGVAISDPSGLIAQGIKTI--KRSNLDEDIQEINKIINSFKAEEIVVGF 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTS-KGVELLLNPLDLHPVEYK 141
P N N Q + I+ + KK D+ W+E T+ + +L+ D+ + K
Sbjct: 60 PKN--MNGTIGPQGQKVINFVEILKKEIDLPILLWDERLTTVEANRMLIEGADMRRDKRK 117
Query: 142 TILDKFAAVGILQEYLDNANR 162
++DK AA ILQ YLD+ +
Sbjct: 118 KVIDKLAATIILQGYLDHKRK 138
>gi|149174656|ref|ZP_01853281.1| Holliday junction resolvase YqgF [Planctomyces maris DSM 8797]
gi|148846350|gb|EDL60688.1| Holliday junction resolvase YqgF [Planctomyces maris DSM 8797]
Length = 162
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 79/155 (50%), Gaps = 12/155 (7%)
Query: 12 QMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLIS 71
Q + + GR LGLD G K VG++IS + IASPL R+ D + S+I+
Sbjct: 9 QPFEAEFPAEGRLLGLDYGTKRVGIAISTFEQNIASPLDNYNRQSLPQD--QKHLLSIIT 66
Query: 72 EFNLEGFIVGYPFN----RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE 127
E+ +G +VG P + Q A +A Q ++ + ++ YW+E ++S E
Sbjct: 67 EYRCKGLVVGLPVHMSGDEGQKAKEARQFGNWVSQFA------EIPVRYWDERYSSATAE 120
Query: 128 LLLNPLDLHPVEYKTILDKFAAVGILQEYLDNANR 162
+L L++ + K LDK AA ILQ +LD+ NR
Sbjct: 121 EILVNLNMSRNKRKAYLDKLAAQIILQSFLDSPNR 155
>gi|365882702|ref|ZP_09421898.1| putative Holliday junction resolvase [Bradyrhizobium sp. ORS 375]
gi|365288936|emb|CCD94429.1| putative Holliday junction resolvase [Bradyrhizobium sp. ORS 375]
Length = 161
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 73/141 (51%), Gaps = 6/141 (4%)
Query: 20 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFI 79
+RG +GLD+G K +G+++SDP K+A+ + + RK D A S+ SE + GF+
Sbjct: 17 ERGALVGLDLGTKTIGVAVSDPDRKLATGVETIQRKAFKAD--AARLLSICSERKVVGFV 74
Query: 80 VGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
+G P N + Q + F +L+ L D+ W+E ++ VE L +D+
Sbjct: 75 LGLPINMDGSEGPRAQSTRAFARNLAG---LTDLPIGLWDERLSTAAVERELIGMDVSRA 131
Query: 139 EYKTILDKFAAVGILQEYLDN 159
+ ++D AA+ ILQ LD
Sbjct: 132 KRAEVIDTHAAIFILQGALDR 152
>gi|227499548|ref|ZP_03929655.1| crossover junction endodeoxyribonuclease [Anaerococcus tetradius
ATCC 35098]
gi|227218307|gb|EEI83561.1| crossover junction endodeoxyribonuclease [Anaerococcus tetradius
ATCC 35098]
Length = 139
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 76/138 (55%), Gaps = 6/138 (4%)
Query: 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 81
R +GLDVG+K +G+++SDP +A+ L + RK + D+ E R +I++ ++E +VG
Sbjct: 2 SRIMGLDVGNKTIGVALSDPMFLLANGLETIKRKNASSDI--ERLREIINDNDVELIVVG 59
Query: 82 YPFNRQQNAA-DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
P N A++V F+D KK D++ Y +E T+ E +L +D+
Sbjct: 60 LPKNMNNTIGPQAMRVMSFVD---LIKKQVDIEIVYQDERMTTIQSEAVLIDMDVRRENR 116
Query: 141 KTILDKFAAVGILQEYLD 158
K +DK AA ILQ YLD
Sbjct: 117 KKYIDKIAATFILQTYLD 134
>gi|312793390|ref|YP_004026313.1| holliday junction resolvase yqgf [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|344995885|ref|YP_004798228.1| Holliday junction resolvase [Caldicellulosiruptor lactoaceticus 6A]
gi|312180530|gb|ADQ40700.1| Holliday junction resolvase YqgF [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|343964104|gb|AEM73251.1| Holliday junction resolvase [Caldicellulosiruptor lactoaceticus 6A]
Length = 138
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 82/141 (58%), Gaps = 8/141 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASP-LSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 81
R L LD+G+ VG++ISDP A P +++ LR K+ + E+ S+ F++E ++G
Sbjct: 2 RILCLDIGNSRVGVAISDPLKITAQPVMTIELRNKD----LFEELDSIFQRFSIEKVVIG 57
Query: 82 YPFNRQQNAADAVQVKLFIDDLSA-TKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
YP ++ ++K ID++S K +++ W+E F++K VE ++N +L+
Sbjct: 58 YPLSKLHPDQKDEKLKK-IDEISEKIKSRYNVEIVKWDERFSTKAVERVMNE-ELNWKRK 115
Query: 141 KTILDKFAAVGILQEYLDNAN 161
K ++DK AAV ILQ YLD N
Sbjct: 116 KKVIDKVAAVYILQGYLDFYN 136
>gi|374332118|ref|YP_005082302.1| Resolvase, holliday junction-type, YqgF-like protein [Pseudovibrio
sp. FO-BEG1]
gi|359344906|gb|AEV38280.1| Resolvase, holliday junction-type, YqgF-like protein [Pseudovibrio
sp. FO-BEG1]
Length = 165
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 71/140 (50%), Gaps = 6/140 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +G+D+G K +GL+++D +IASPL + RKK T D+ E L E + G ++G
Sbjct: 21 RLIGIDLGTKTIGLALTDSGRQIASPLETIKRKKFTQDV--ERLLDLCHEHGVYGLVIGL 78
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N Q + F+ +L+ +K E + YW+E ++ V L D
Sbjct: 79 PLNMDGTEGPRCQATRAFVRNLA--QKTE-IPITYWDERLSTAAVTRTLIEADRSRARRA 135
Query: 142 TILDKFAAVGILQEYLDNAN 161
++DK AA ILQ +LD N
Sbjct: 136 ELVDKMAATYILQGFLDRVN 155
>gi|167040129|ref|YP_001663114.1| Holliday junction resolvase-like protein [Thermoanaerobacter sp.
X514]
gi|256752542|ref|ZP_05493398.1| Holliday junction resolvase YqgF [Thermoanaerobacter ethanolicus
CCSD1]
gi|300914213|ref|ZP_07131529.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X561]
gi|307724552|ref|YP_003904303.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X513]
gi|226695312|sp|B0K0Q3.1|RUVX_THEPX RecName: Full=Putative Holliday junction resolvase
gi|166854369|gb|ABY92778.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X514]
gi|256748608|gb|EEU61656.1| Holliday junction resolvase YqgF [Thermoanaerobacter ethanolicus
CCSD1]
gi|300889148|gb|EFK84294.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X561]
gi|307581613|gb|ADN55012.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X513]
Length = 139
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 75/143 (52%), Gaps = 7/143 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVGDK +G++ISD IA L+ + R N D E + +I+E+ + IVG
Sbjct: 2 RIMGLDVGDKTIGIAISDLSGTIAQGLTTIKRSSNKKDF--ERIKQIINEYEVGMIIVGL 59
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEY 140
P N Q V F++ L K+ ++ W+E T+ E +L+ D+ +
Sbjct: 60 PKNLNGTLGPQGQKVVRFVEHL---KEAINIPIILWDERLTTVEAERVLIEKADISRAKR 116
Query: 141 KTILDKFAAVGILQEYLDNANRK 163
K ++DK AAV ILQ YLD+ K
Sbjct: 117 KEVIDKLAAVLILQNYLDSQKNK 139
>gi|323136211|ref|ZP_08071293.1| Holliday junction resolvase YqgF [Methylocystis sp. ATCC 49242]
gi|322398285|gb|EFY00805.1| Holliday junction resolvase YqgF [Methylocystis sp. ATCC 49242]
Length = 157
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 79/150 (52%), Gaps = 6/150 (4%)
Query: 14 LKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEF 73
+ R + +GR +GLD+G K +GL++SD + ++ASPL + R K + D A R+ +F
Sbjct: 11 VARVLPAKGRLMGLDLGTKTIGLALSDVERRLASPLDTIKRVKFSQDAGALLQRA--QDF 68
Query: 74 NLEGFIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNP 132
+++ + G P N A Q + F+ +L +KL + + +W+E ++ V L
Sbjct: 69 DVQALVFGLPLNMDGTAGPRAQATRAFMRNL---RKLTPIPFVFWDERLSTAAVTRELIA 125
Query: 133 LDLHPVEYKTILDKFAAVGILQEYLDNANR 162
D + ++D+ AA ILQ LD +R
Sbjct: 126 QDASRAKRAEVVDRMAAAYILQGALDRLSR 155
>gi|304440513|ref|ZP_07400400.1| crossover junction endodeoxyribonuclease [Peptoniphilus duerdenii
ATCC BAA-1640]
gi|304370991|gb|EFM24610.1| crossover junction endodeoxyribonuclease [Peptoniphilus duerdenii
ATCC BAA-1640]
Length = 141
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 75/142 (52%), Gaps = 10/142 (7%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
RFLGLDVGDKY+G+SISD IAS L + R N D E+ +++++N+ +VG
Sbjct: 3 RFLGLDVGDKYIGVSISDTTCTIASNLVTIRRTSN--DKAYEEIEGILNDYNIGTVVVGV 60
Query: 83 PFNRQQNAADAV---QVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
P N + +D V +++ F L+ +E + +E FTS E L ++
Sbjct: 61 PIN--MDGSDTVMSKRIRKFARKLTPKFGVE---VIFQDERFTSIEAERTLIQSNVRREN 115
Query: 140 YKTILDKFAAVGILQEYLDNAN 161
K +D+ AA ILQ Y+D N
Sbjct: 116 RKKYIDQLAASIILQTYIDRMN 137
>gi|402774118|ref|YP_006593655.1| Holliday junction resolvase [Methylocystis sp. SC2]
gi|401776138|emb|CCJ09004.1| Putative Holliday junction resolvase [Methylocystis sp. SC2]
Length = 154
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 76/143 (53%), Gaps = 6/143 (4%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV 80
+GR +GLD+G K +GL++SD + ++ASPL + R K + D A R+ ++F++ +V
Sbjct: 16 KGRLMGLDLGTKTIGLALSDVERRLASPLDTIGRVKFSQDAAALLNRA--ADFDICALVV 73
Query: 81 GYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
G P N Q + F+ +LS KL + +A+W+E ++ V L + +
Sbjct: 74 GLPLNMDGTEGPRAQATRAFMRNLS---KLASLPFAFWDERLSTAAVTRELIAQNASRAK 130
Query: 140 YKTILDKFAAVGILQEYLDNANR 162
++D+ AA ILQ LD R
Sbjct: 131 RAEVVDRMAAAYILQGALDRLKR 153
>gi|86749549|ref|YP_486045.1| Holliday junction resolvase-like protein [Rhodopseudomonas
palustris HaA2]
gi|146325600|sp|Q2IXC6.1|RUVX_RHOP2 RecName: Full=Putative Holliday junction resolvase
gi|86572577|gb|ABD07134.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris HaA2]
Length = 160
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 6/139 (4%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV 80
RG LGLD+G K +G+++SDP ++A+ + + RK T D A+ +L + N GF++
Sbjct: 18 RGSLLGLDLGTKTIGVAVSDPDRRLATGIETVARKAFTAD--AQRLLALAAGRNACGFVL 75
Query: 81 GYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
G P N + VQ + F + + +L ++ W+E ++ VE L D+ +
Sbjct: 76 GLPLNMDGSEGPRVQSTRAFARNFA---RLTELPIGLWDERLSTAAVERELIANDVSRAK 132
Query: 140 YKTILDKFAAVGILQEYLD 158
I+D+ AA+ ILQ LD
Sbjct: 133 RAKIIDEHAAIYILQGALD 151
>gi|257066431|ref|YP_003152687.1| Holliday junction resolvase YqgF [Anaerococcus prevotii DSM 20548]
gi|256798311|gb|ACV28966.1| Holliday junction resolvase YqgF [Anaerococcus prevotii DSM 20548]
Length = 139
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 77/138 (55%), Gaps = 6/138 (4%)
Query: 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 81
R +GLDVG+K +G+++SDP +++ L + RKK ++D+ E + L+ E ++ +VG
Sbjct: 2 SRIMGLDVGNKTIGVALSDPMFLLSNALETIKRKKASVDI--ERIKQLVEENDVNLIVVG 59
Query: 82 YPFNRQQNAA-DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
P N A++V F+D L KK D++ Y +E T+ E +L +++
Sbjct: 60 LPKNMNNTIGPQAMRVISFVDLL---KKQVDVEVVYEDERMTTIQSEAVLMDMEVRRENR 116
Query: 141 KTILDKFAAVGILQEYLD 158
K +DK AA ILQ YLD
Sbjct: 117 KKYIDKIAATFILQTYLD 134
>gi|254474193|ref|ZP_05087584.1| conserved hypothetical protein TIGR00250 [Pseudovibrio sp. JE062]
gi|211956723|gb|EEA91932.1| conserved hypothetical protein TIGR00250 [Pseudovibrio sp. JE062]
Length = 165
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 71/140 (50%), Gaps = 6/140 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +G+D+G K +GL+++D +IASPL + RKK T D+ E L E + G ++G
Sbjct: 21 RLIGIDLGTKTIGLALTDSGRQIASPLETIKRKKFTQDV--ERLLDLCHEHGVFGLVIGL 78
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N Q + F+ +L+ +K E + YW+E ++ V L D
Sbjct: 79 PLNMDGTEGPRCQATRAFVRNLA--QKTE-IPITYWDERLSTAAVTRTLIEADRSRARRA 135
Query: 142 TILDKFAAVGILQEYLDNAN 161
++DK AA ILQ +LD N
Sbjct: 136 ELVDKMAATYILQGFLDRVN 155
>gi|379010850|ref|YP_005268662.1| resolvase holliday junction-type [Acetobacterium woodii DSM 1030]
gi|375301639|gb|AFA47773.1| resolvase holliday junction-type [Acetobacterium woodii DSM 1030]
Length = 138
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 73/138 (52%), Gaps = 4/138 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LG+DVGDK++G++++DP A + L RK DL A FR LI ++ ++ + G
Sbjct: 3 RILGIDVGDKWIGVAVTDPLQITAQGVMTLKRKTRDDDLQA--FRDLIEKYEIKKVVAGL 60
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N N +++ Q + ++ KK +++ Y +E TS E +L ++ K
Sbjct: 61 PLN--MNGSESAQTRKTVNFCQFIKKRLNVEIIYIDERLTSAWSEKILIEGNVSRENRKE 118
Query: 143 ILDKFAAVGILQEYLDNA 160
+D AA ILQ Y+D A
Sbjct: 119 YIDMLAAQIILQSYMDRA 136
>gi|154253281|ref|YP_001414105.1| Holliday junction resolvase YqgF [Parvibaculum lavamentivorans
DS-1]
gi|154157231|gb|ABS64448.1| Holliday junction resolvase YqgF [Parvibaculum lavamentivorans
DS-1]
Length = 182
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 71/146 (48%), Gaps = 6/146 (4%)
Query: 14 LKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEF 73
LK + + R +G+D+G K +GL++SD IASPL + R K T D AE +L E
Sbjct: 37 LKVGLGRNRRLIGVDLGSKTIGLALSDVSLSIASPLETIRRTKFTAD--AERLIALAKEH 94
Query: 74 NLEGFIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNP 132
+ + G P N Q + FI +L +KL D+ A+W+E ++ V L
Sbjct: 95 DAGALVFGLPLNMDGTEGPRCQSTRAFIRNL---EKLTDLPIAFWDERLSTMAVTRTLLD 151
Query: 133 LDLHPVEYKTILDKFAAVGILQEYLD 158
D ++DK AA ILQ LD
Sbjct: 152 ADASRARRAELVDKMAAAYILQGALD 177
>gi|414162273|ref|ZP_11418520.1| RNAse H-fold protein YqgF [Afipia felis ATCC 53690]
gi|410880053|gb|EKS27893.1| RNAse H-fold protein YqgF [Afipia felis ATCC 53690]
Length = 167
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 74/141 (52%), Gaps = 6/141 (4%)
Query: 19 SKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGF 78
+ RG +GLD+G K +G+++SDP ++A+ ++ + R+ T D A + + +E GF
Sbjct: 21 TPRGALIGLDLGTKTIGVAVSDPDRRLATGVTTIQRRNFTKD--AAELLRISAERACAGF 78
Query: 79 IVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHP 137
++G P N + Q + F + + KL D+ W+E ++ VE L +D+
Sbjct: 79 VLGLPINMDGSEGPRAQSTRAFARNFA---KLTDLAIGLWDERLSTAAVERELISIDVSR 135
Query: 138 VEYKTILDKFAAVGILQEYLD 158
++D+ AA+ ILQ LD
Sbjct: 136 ARRAEVIDEHAAIFILQGALD 156
>gi|209964820|ref|YP_002297735.1| hypothetical protein RC1_1518 [Rhodospirillum centenum SW]
gi|226731644|sp|B6IN25.1|RUVX_RHOCS RecName: Full=Putative Holliday junction resolvase
gi|209958286|gb|ACI98922.1| conserved hypothetical protein [Rhodospirillum centenum SW]
Length = 188
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 5/148 (3%)
Query: 14 LKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEF 73
LK + + GR +GLD+G+K +GL++SDP +ASP+ + R K T D A++ + +
Sbjct: 9 LKASLPRNGRLMGLDLGEKTIGLAVSDPGLSVASPVGTIRRTKFTQD--AQELARAMRDR 66
Query: 74 NLEGFIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKL--EDMKYAYWNEGFTSKGVELLL 130
++ +VG P N Q V+ F L +L + + A+W+E ++ VE ++
Sbjct: 67 DVRALVVGLPVNMDGTEGPRCQSVREFSRLLLQRPQLFGFEPEIAFWDERLSTSAVERMM 126
Query: 131 NPLDLHPVEYKTILDKFAAVGILQEYLD 158
D+ ++DK AA ILQ LD
Sbjct: 127 IGWDMTRKRRDEVVDKMAAAYILQGALD 154
>gi|167037467|ref|YP_001665045.1| Holliday junction resolvase-like protein [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320115881|ref|YP_004186040.1| Holliday junction resolvase YqgF [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|226695311|sp|B0K996.1|RUVX_THEP3 RecName: Full=Putative Holliday junction resolvase
gi|166856301|gb|ABY94709.1| Holliday junction resolvase YqgF [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319928972|gb|ADV79657.1| Holliday junction resolvase YqgF [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 139
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 74/143 (51%), Gaps = 7/143 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVGDK +G++ISD IA L+ + R N D E + +I+E+ + IVG
Sbjct: 2 RIMGLDVGDKTIGVAISDLSGTIAQGLTTIKRSSNKKDF--ERIKQIINEYEVGMIIVGL 59
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTS-KGVELLLNPLDLHPVEY 140
P N Q V F++ L K+ + W+E T+ + +L+ D+ +
Sbjct: 60 PKNMNGTLGPQGQKVMRFVEHL---KEAFSIPIILWDERLTTVEAQRVLIEKADISRAKR 116
Query: 141 KTILDKFAAVGILQEYLDNANRK 163
K ++DK AAV ILQ YLD+ K
Sbjct: 117 KEVIDKLAAVLILQNYLDSQKNK 139
>gi|83310687|ref|YP_420951.1| putative Holliday junction resolvase [Magnetospirillum magneticum
AMB-1]
gi|82945528|dbj|BAE50392.1| Putative Holliday junction resolvase [Magnetospirillum magneticum
AMB-1]
Length = 159
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 72/144 (50%), Gaps = 6/144 (4%)
Query: 17 KVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLE 76
+S+ R LGLD+G K +GL++SD IA+P + R K T D AE +++ + +
Sbjct: 16 SLSRDQRLLGLDLGSKTIGLALSDVSRTIATPFDTIRRTKFTQD--AELLLAVVDKQGVG 73
Query: 77 GFIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDL 135
G ++G P Q V+ F +L+ +L DM AYW+E ++ V L D
Sbjct: 74 GLVLGLPVEMDGFEGPRCQSVRSFAANLA---RLRDMPIAYWDERLSTSAVTRTLLEADS 130
Query: 136 HPVEYKTILDKFAAVGILQEYLDN 159
++DK AA ILQ LDN
Sbjct: 131 SRKRRAEVVDKMAAAYILQGLLDN 154
>gi|288817797|ref|YP_003432144.1| Holliday junction resolvase [Hydrogenobacter thermophilus TK-6]
gi|384128558|ref|YP_005511171.1| Holliday junction resolvase YqgF [Hydrogenobacter thermophilus
TK-6]
gi|288787196|dbj|BAI68943.1| Holliday junction resolvase [Hydrogenobacter thermophilus TK-6]
gi|308751395|gb|ADO44878.1| Holliday junction resolvase YqgF [Hydrogenobacter thermophilus
TK-6]
Length = 133
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 74/138 (53%), Gaps = 8/138 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
+ L LD G K +GL++ D IASPL V ++ + E R+LISE+ + IVG
Sbjct: 2 KVLALDYGSKRIGLALGDTSLNIASPLGVFENREGVV----EKIRNLISEYRVSLLIVGL 57
Query: 83 PFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P R Q A +V+ F+ L + E+++ W+E +T+K LL DL P + K
Sbjct: 58 PLTPRGQKGQRAKEVEEFVKKLRESLP-EEIELLMWDERYTTKEAYWLLQ--DLPPTKRK 114
Query: 142 TILDKFAAVGILQEYLDN 159
+ D +A IL+EYL++
Sbjct: 115 KLKDSLSAYIILKEYLES 132
>gi|332799383|ref|YP_004460882.1| Holliday junction resolvase [Tepidanaerobacter acetatoxydans Re1]
gi|438002531|ref|YP_007272274.1| putative holliday junction resolvase [Tepidanaerobacter
acetatoxydans Re1]
gi|332697118|gb|AEE91575.1| Holliday junction resolvase [Tepidanaerobacter acetatoxydans Re1]
gi|432179325|emb|CCP26298.1| putative holliday junction resolvase [Tepidanaerobacter
acetatoxydans Re1]
Length = 143
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 77/143 (53%), Gaps = 14/143 (9%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG+K VG++ISD A + V+ RK + + + +IS++N+ IVG
Sbjct: 2 RILGLDVGEKRVGVAISDELGLTAQGIDVIERKNDGKNKDIDRICRIISDYNVTKVIVGL 61
Query: 83 PFNRQQN---AADAVQVKLFIDDLSATKKLE---DMKYAYWNEGFTSKGVELLLNPLDLH 136
P N +++AV+ + TKKL+ + +W+E T+ E +L D+
Sbjct: 62 PKNMNGTLGPSSEAVE--------NYTKKLQKAISIDLEFWDERLTTAAAERILIEADVS 113
Query: 137 PVEYKTILDKFAAVGILQEYLDN 159
+ K ++DK AAV ILQ YLD+
Sbjct: 114 RQKRKGVIDKLAAVLILQSYLDS 136
>gi|325107974|ref|YP_004269042.1| Holliday junction resolvase [Planctomyces brasiliensis DSM 5305]
gi|324968242|gb|ADY59020.1| Holliday junction resolvase [Planctomyces brasiliensis DSM 5305]
Length = 155
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 72/142 (50%), Gaps = 6/142 (4%)
Query: 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 81
G LG+D G K VGL+IS P IASPL ++ R + D ++ + +EF ++G +VG
Sbjct: 9 GTLLGIDFGTKRVGLAISTPDQSIASPLEIIHRSQPAQD--SKKICKICNEFRVKGLVVG 66
Query: 82 YPFNRQ-QNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
P + A + ++F D ++ + YW+E FTS + L + +
Sbjct: 67 LPVHMSGSEGGKAKEARVFGD---WCGEITQLPVIYWDERFTSALADNHLRQSTMSQAKR 123
Query: 141 KTILDKFAAVGILQEYLDNANR 162
K LDK AA +LQ +L+ +R
Sbjct: 124 KKHLDKLAAQVMLQSFLEAPDR 145
>gi|345017552|ref|YP_004819905.1| Holliday junction resolvase [Thermoanaerobacter wiegelii Rt8.B1]
gi|344032895|gb|AEM78621.1| Holliday junction resolvase [Thermoanaerobacter wiegelii Rt8.B1]
Length = 139
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 74/143 (51%), Gaps = 7/143 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVGDK +G++ISD IA L+ + R N D E + +I+E+ + IVG
Sbjct: 2 RIMGLDVGDKTIGVAISDLSGTIAQGLTTIKRSSNKKDF--ERIKQIINEYEVGMIIVGL 59
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTS-KGVELLLNPLDLHPVEY 140
P N Q V F++ L K+ + W+E T+ + +L+ D+ +
Sbjct: 60 PKNMSGTLGPQGQKVVRFVEHL---KEAFSIPIILWDERLTTVEAQRVLIEKADISRAKR 116
Query: 141 KTILDKFAAVGILQEYLDNANRK 163
K ++DK AAV ILQ YLD+ K
Sbjct: 117 KEVIDKLAAVLILQNYLDSQKNK 139
>gi|403386929|ref|ZP_10928986.1| Holliday junction resolvase-like protein [Clostridium sp. JC122]
Length = 135
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 72/138 (52%), Gaps = 6/138 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVGD+ +G++ISDP A ++ + RK D+ + + E+++E + G
Sbjct: 2 RILGLDVGDRTIGVAISDPLGFTAQGITTIKRKGLEYDM--NELMKICDEYSVEKIVSGL 59
Query: 83 PFNRQQNAAD-AVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + +VK F ++L KK D +W+E T+ ++ DL + K
Sbjct: 60 PKNMNGTVGEQGEKVKQFCEEL---KKHTDKPIIFWDERLTTVAAHRVMLEADLSRSKRK 116
Query: 142 TILDKFAAVGILQEYLDN 159
++DK AA ILQ YLD+
Sbjct: 117 KLVDKIAATYILQGYLDS 134
>gi|118597214|sp|Q2W6Y3.2|RUVX_MAGMM RecName: Full=Putative Holliday junction resolvase
Length = 155
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 72/144 (50%), Gaps = 6/144 (4%)
Query: 17 KVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLE 76
+S+ R LGLD+G K +GL++SD IA+P + R K T D AE +++ + +
Sbjct: 12 SLSRDQRLLGLDLGSKTIGLALSDVSRTIATPFDTIRRTKFTQD--AELLLAVVDKQGVG 69
Query: 77 GFIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDL 135
G ++G P Q V+ F +L+ +L DM AYW+E ++ V L D
Sbjct: 70 GLVLGLPVEMDGFEGPRCQSVRSFAANLA---RLRDMPIAYWDERLSTSAVTRTLLEADS 126
Query: 136 HPVEYKTILDKFAAVGILQEYLDN 159
++DK AA ILQ LDN
Sbjct: 127 SRKRRAEVVDKMAAAYILQGLLDN 150
>gi|357384644|ref|YP_004899368.1| putative Holliday junction resolvase [Pelagibacterium halotolerans
B2]
gi|351593281|gb|AEQ51618.1| putative Holliday junction resolvase [Pelagibacterium halotolerans
B2]
Length = 152
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 72/138 (52%), Gaps = 6/138 (4%)
Query: 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 81
G+ +GLD+G K +G++ISD A+P+ + R K T D AE +LI++ N+ G ++G
Sbjct: 15 GKLMGLDLGTKTIGVAISDSLRMAATPVETIKRTKFTAD--AERLLALIAQNNVTGIVMG 72
Query: 82 YPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
P N + Q + F+ + K+ D+ +W+E ++ V + DL +
Sbjct: 73 LPLNMDGSEGPRAQSARAFVRNF---KQKTDLPIVFWDERMSTMAVTRTMLEADLSRAKR 129
Query: 141 KTILDKFAAVGILQEYLD 158
++DK AA ILQ LD
Sbjct: 130 AEVVDKLAASYILQGALD 147
>gi|221632739|ref|YP_002521960.1| hypothetical protein trd_0729 [Thermomicrobium roseum DSM 5159]
gi|221156262|gb|ACM05389.1| conserved hypothetical protein TIGR00250 [Thermomicrobium roseum
DSM 5159]
Length = 161
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 72/138 (52%), Gaps = 8/138 (5%)
Query: 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 81
GR +GLDVG + VG++ISD IASPL+ + ++ ++ + E LIS ++ +VG
Sbjct: 7 GRTMGLDVGGRRVGVAISDEMGMIASPLATIDLDRDGLERLVE----LISRYDPVLIVVG 62
Query: 82 YPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
P R + + AV+ K F L+ + D +W+E TS E LL +
Sbjct: 63 LPVTMRGREGSQAVETKAFAARLA---ERIDRPIVFWDERLTSSAAERLLTDAGVGRKRR 119
Query: 141 KTILDKFAAVGILQEYLD 158
+ ++D AA +LQ YLD
Sbjct: 120 RELVDAVAAALLLQSYLD 137
>gi|429765848|ref|ZP_19298128.1| RNAse H domain protein, YqgF family [Clostridium celatum DSM 1785]
gi|429185701|gb|EKY26675.1| RNAse H domain protein, YqgF family [Clostridium celatum DSM 1785]
Length = 139
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 4/136 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K +G+++SDP A ++ + R K D+ E+ + E+ +E ++G
Sbjct: 2 RILGLDVGSKTIGVALSDPLGWTAQGITTIRRTKKEQDI--EEVHKICKEYGVETIVIGL 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N +A + L + +L K+ + W+E T+ + DL + K
Sbjct: 60 PKNMNNTIGEAGERVLALSEL--IKEKTGLHIEMWDERLTTVAAHRAMLEADLSRNKRKK 117
Query: 143 ILDKFAAVGILQEYLD 158
I+DK AA ILQ YLD
Sbjct: 118 IVDKIAATYILQGYLD 133
>gi|333979434|ref|YP_004517379.1| Holliday junction resolvase [Desulfotomaculum kuznetsovii DSM 6115]
gi|333822915|gb|AEG15578.1| Holliday junction resolvase [Desulfotomaculum kuznetsovii DSM 6115]
Length = 147
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 72/142 (50%), Gaps = 5/142 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG+K +G+++SDP A + V+ R + + + + LI ++ +E +VG
Sbjct: 4 RILGLDVGEKTIGVAVSDPLGWTAQGVGVIRRDRPKEQITGQ-LKKLIQDYQVERIVVGL 62
Query: 83 PFNRQQN-AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + +V F L A L W+E ++ E +L D+ + K
Sbjct: 63 PRNMNGTLGSQGQKVLAFARQLGAELGLP---VETWDERLSTVSAEKVLLAADVSRAKRK 119
Query: 142 TILDKFAAVGILQEYLDNANRK 163
I+DK AA ILQ YLD+ N+K
Sbjct: 120 KIIDKMAAAVILQNYLDSRNKK 141
>gi|148657331|ref|YP_001277536.1| Holliday junction resolvase YqgF [Roseiflexus sp. RS-1]
gi|226731646|sp|A5UY83.1|RUVX_ROSS1 RecName: Full=Putative Holliday junction resolvase
gi|148569441|gb|ABQ91586.1| Holliday junction resolvase YqgF [Roseiflexus sp. RS-1]
Length = 141
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 78/142 (54%), Gaps = 6/142 (4%)
Query: 19 SKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGF 78
S+ GR + LDVG++ +G+++SDP +ASPL+ + + L + +LI ++ +
Sbjct: 3 SEPGRVMALDVGERRIGVALSDPTRMLASPLTTIRAVPRSTAL--KRILTLIRDYQVTAL 60
Query: 79 IVGYPFNRQQN-AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHP 137
+VG P + A V+ F+D+L + L D+ + +E T+ E ++ L + P
Sbjct: 61 VVGLPLTMNGDIGPQATLVQQFVDEL---RPLIDIPIFFVDERLTTVAAERMMIDLKIKP 117
Query: 138 VEYKTILDKFAAVGILQEYLDN 159
+ + +D+ AA ILQ++LD+
Sbjct: 118 EQRRARIDEVAASIILQDFLDS 139
>gi|452962634|gb|EME67751.1| putative Holliday junction resolvase [Magnetospirillum sp. SO-1]
Length = 155
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 76/160 (47%), Gaps = 11/160 (6%)
Query: 1 MKYVKPLRLFEQMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTID 60
M + P L + + + R LGLD+G K +GL++SD IA+P + R K T D
Sbjct: 1 MPILSPAELLASLARDQ-----RLLGLDLGSKTIGLALSDVSRTIATPFDTIRRIKFTKD 55
Query: 61 LMAEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNE 119
AE +++ ++ G ++G P Q V+ F +L+ +L DM AYW+E
Sbjct: 56 --AEQLLAVVDRQDVGGLVLGLPVEMDGFEGPRCQSVRSFAANLA---RLRDMPIAYWDE 110
Query: 120 GFTSKGVELLLNPLDLHPVEYKTILDKFAAVGILQEYLDN 159
++ V L D ++DK AA ILQ LDN
Sbjct: 111 RLSTSAVTRTLLEADSSRKRRAEVVDKMAAAYILQGLLDN 150
>gi|299135137|ref|ZP_07028328.1| Holliday junction resolvase YqgF [Afipia sp. 1NLS2]
gi|298590114|gb|EFI50318.1| Holliday junction resolvase YqgF [Afipia sp. 1NLS2]
Length = 165
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 72/141 (51%), Gaps = 6/141 (4%)
Query: 19 SKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGF 78
+ RG +GLD+G K +G+++SDP ++A+ ++ + RK T D A + + E GF
Sbjct: 21 TPRGALIGLDLGTKTIGVAVSDPDRRLATGVTTIQRKTFTKD--AAELLRIAGERASSGF 78
Query: 79 IVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHP 137
++G P N + Q + F + S KL D+ W+E ++ VE L D+
Sbjct: 79 VLGLPINMDGSEGPRAQSTRAFARNFS---KLTDLAIGLWDERLSTAAVERELIANDVSR 135
Query: 138 VEYKTILDKFAAVGILQEYLD 158
++D+ AA+ ILQ LD
Sbjct: 136 ARRAEVIDEHAAIFILQGALD 156
>gi|146296781|ref|YP_001180552.1| Holliday junction resolvase YqgF [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|167012707|sp|A4XKC6.1|RUVX_CALS8 RecName: Full=Putative Holliday junction resolvase
gi|145410357|gb|ABP67361.1| Holliday junction resolvase YqgF [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 138
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 73/143 (51%), Gaps = 11/143 (7%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLI----SEFNLEGF 78
R L LD+G + +G++ISDP A P VL DL ED S + +E +E
Sbjct: 2 RILCLDIGSRRIGVAISDPLKIAAQPFCVL-------DLQKEDLYSCLDKIFNEHQIEKI 54
Query: 79 IVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
++GYP ++ +++ + S ++ + W+E F++K VE +L ++
Sbjct: 55 VIGYPVSKFHPDKATEKLQKIDEICSELERRYKVGIIKWDERFSTKAVERILREENVSWQ 114
Query: 139 EYKTILDKFAAVGILQEYLDNAN 161
+ K ++DK AAV ILQ YLD N
Sbjct: 115 KRKKVVDKLAAVYILQGYLDFIN 137
>gi|338737975|ref|YP_004674937.1| Holliday junction resolvase [Hyphomicrobium sp. MC1]
gi|337758538|emb|CCB64363.1| putative Holliday junction resolvase [Hyphomicrobium sp. MC1]
Length = 166
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 68/138 (49%), Gaps = 6/138 (4%)
Query: 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 81
GR +G+D G K +GL++SD + IASPL + R K T D A ++++E + GF++G
Sbjct: 28 GRLIGIDAGTKTLGLALSDVRRTIASPLETIRRTKFTAD--AARLFAIVAEHGVSGFVLG 85
Query: 82 YPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
P N Q + +L+ KL + W+E T+ E +L D
Sbjct: 86 LPRNLDGTEGPRAQATRALARNLN---KLSPLPILLWDERLTTAEAERMLIDADQTRKRR 142
Query: 141 KTILDKFAAVGILQEYLD 158
++DK AA ILQ LD
Sbjct: 143 AAVIDKLAATIILQSALD 160
>gi|219847050|ref|YP_002461483.1| Holliday junction resolvase YqgF [Chloroflexus aggregans DSM 9485]
gi|254767505|sp|B8GC73.1|RUVX_CHLAD RecName: Full=Putative Holliday junction resolvase
gi|219541309|gb|ACL23047.1| Holliday junction resolvase YqgF [Chloroflexus aggregans DSM 9485]
Length = 142
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 74/136 (54%), Gaps = 6/136 (4%)
Query: 24 FLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYP 83
LGLDVG++ +G++ISD + +IA+PL+ + + + L++E + +VG P
Sbjct: 6 ILGLDVGERRIGVAISDVEARIAAPLTTI--PAHPPERAIAQIARLVAERGVRRVVVGLP 63
Query: 84 FN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
R ++ A ++ F+D L+A + + ++E TS E +L L + P + K
Sbjct: 64 LTMRGEHGPQAAAIQRFVDALAA---VLNCPVEMFDERLTSVAAEQMLRNLGVKPAKIKE 120
Query: 143 ILDKFAAVGILQEYLD 158
+D+ AA ILQ+YLD
Sbjct: 121 QIDQVAASIILQDYLD 136
>gi|91977491|ref|YP_570150.1| Holliday junction resolvase-like protein [Rhodopseudomonas
palustris BisB5]
gi|123735326|sp|Q135J0.1|RUVX_RHOPS RecName: Full=Putative Holliday junction resolvase
gi|91683947|gb|ABE40249.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris BisB5]
Length = 160
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 73/139 (52%), Gaps = 6/139 (4%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV 80
RG LGLD+G K +G+++SDP K+A+ + + R T D A+ +L +E + GF++
Sbjct: 18 RGALLGLDLGTKTIGVAVSDPDRKLATGIETVARTAFTAD--AKRVLALAAERSACGFVL 75
Query: 81 GYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
G P N + Q + F + + +L ++ W+E ++ VE L D+ +
Sbjct: 76 GLPLNMDGSEGPRAQSTRAFARNFA---RLTELPIGLWDERLSTAAVERALIANDVSRAK 132
Query: 140 YKTILDKFAAVGILQEYLD 158
I+D+ AA+ ILQ LD
Sbjct: 133 RAKIIDEHAAIYILQGALD 151
>gi|399888355|ref|ZP_10774232.1| Holliday junction resolvase-like protein [Clostridium arbusti
SL206]
Length = 135
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 70/137 (51%), Gaps = 4/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD+GD+ +G+++SDP A ++ + RK + D+ ++ L E+N++ + G
Sbjct: 2 RILGLDIGDRTIGVAVSDPLGYTAQGITTIRRKNESKDI--DELIKLCKEYNVDTIVSGL 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N + L ++ TK D+ W+E T+ E + DL + K
Sbjct: 60 PKNMNGTIGPQSEKVLGFCEILKTKI--DIPIKMWDERLTTVAAERAMLEADLSRAKRKK 117
Query: 143 ILDKFAAVGILQEYLDN 159
I+DK AA ILQ YLD+
Sbjct: 118 IVDKMAATYILQGYLDS 134
>gi|304316717|ref|YP_003851862.1| Holliday junction resolvase YqgF [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778219|gb|ADL68778.1| Holliday junction resolvase YqgF [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 140
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 75/143 (52%), Gaps = 5/143 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVGDK +G++ISDP IA + + R D++ + + + + F E +VG+
Sbjct: 2 RTIGLDVGDKTIGVAISDPSGLIAQGIKTIKRSNLDDDIL--EIKRIANSFKAEEIVVGF 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTS-KGVELLLNPLDLHPVEYK 141
P N N Q + I+ + KK ++ W+E T+ + +L+ D+ + K
Sbjct: 60 PKN--MNGTIGSQGQKVINFVEVLKKEINLPIMLWDERLTTVEASRMLIEGADMRRDKRK 117
Query: 142 TILDKFAAVGILQEYLDNANRKV 164
++DK AA ILQ YLD+ + +
Sbjct: 118 KVIDKLAATIILQGYLDHKRKSI 140
>gi|309791342|ref|ZP_07685865.1| Holliday junction resolvase YqgF [Oscillochloris trichoides DG-6]
gi|308226652|gb|EFO80357.1| Holliday junction resolvase YqgF [Oscillochloris trichoides DG6]
Length = 148
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 75/140 (53%), Gaps = 10/140 (7%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLR--KKNTIDLMAEDFRSLISEFNLEGFIV 80
R LGLDVGD+ +G+++SD +ASPL+ + + I ++A L+ E ++G +V
Sbjct: 5 RLLGLDVGDRRIGVALSDALGMLASPLTTINANPRSQAITMIAR----LVREHEVQGIVV 60
Query: 81 GYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
G P R + A Q + F +L L M ++E +T+ E LL + + P +
Sbjct: 61 GLPLTLRGEIGPQAEQTRSFAQELERQVGLPVM---LFDERYTTTVAEQLLREMGVKPEK 117
Query: 140 YKTILDKFAAVGILQEYLDN 159
K +D+ AA ILQ+YLD+
Sbjct: 118 RKQQIDQVAASIILQDYLDH 137
>gi|255527853|ref|ZP_05394701.1| Holliday junction resolvase YqgF [Clostridium carboxidivorans P7]
gi|296185454|ref|ZP_06853864.1| RNAse H-fold protein YqgF [Clostridium carboxidivorans P7]
gi|255508464|gb|EET84856.1| Holliday junction resolvase YqgF [Clostridium carboxidivorans P7]
gi|296050288|gb|EFG89712.1| RNAse H-fold protein YqgF [Clostridium carboxidivorans P7]
Length = 138
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 72/141 (51%), Gaps = 4/141 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVGD+ +G+++SDP A ++ + RK D+ ++ +++ E+N+E + G
Sbjct: 2 RILGLDVGDRTIGVAVSDPLGFTAQGITTIRRKSQDADI--KELKNICDEYNVETIVSGL 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N N Q + + K+ + W+E T+ + DL + K
Sbjct: 60 PKN--MNGTLGPQSEKVLKFCEVIKEKIGLPIKMWDERLTTVAAHRAMLEADLSRNKRKK 117
Query: 143 ILDKFAAVGILQEYLDNANRK 163
I+DK AA+ ILQ YLD+ + K
Sbjct: 118 IVDKMAAIYILQGYLDSISNK 138
>gi|367473869|ref|ZP_09473411.1| putative Holliday junction resolvase [Bradyrhizobium sp. ORS 285]
gi|365273781|emb|CCD85879.1| putative Holliday junction resolvase [Bradyrhizobium sp. ORS 285]
Length = 161
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 73/141 (51%), Gaps = 6/141 (4%)
Query: 20 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFI 79
+RG +GLD+G K +G+++SDP ++A+ + + RK D A ++ +E + GF+
Sbjct: 17 ERGALVGLDLGTKTIGVAVSDPDRRLATGVETIQRKAFKAD--AARLLAICAERKVVGFV 74
Query: 80 VGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
+G P N + Q + F +L++ L D+ W+E ++ VE L +D+
Sbjct: 75 LGLPINMDGSEGPRAQSTRAFARNLAS---LTDLPIGLWDERLSTAAVERELIGMDVSRA 131
Query: 139 EYKTILDKFAAVGILQEYLDN 159
++D AA+ ILQ LD
Sbjct: 132 RRAEVIDTHAAIFILQGALDR 152
>gi|377567934|ref|ZP_09797135.1| putative Holliday junction resolvase [Gordonia terrae NBRC 100016]
gi|377534876|dbj|GAB42300.1| putative Holliday junction resolvase [Gordonia terrae NBRC 100016]
Length = 153
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 75/139 (53%), Gaps = 4/139 (2%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV 80
RGR LG+DVG +G+++ DP +A+P+ + R + D + + +L++E+ G +V
Sbjct: 15 RGRLLGIDVGSVRIGVAVCDPDGILATPVETVRRTPSRTDDL-DRIAALVTEYEAVGVVV 73
Query: 81 GYPFNRQQNAADAVQV-KLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
G P + A A + + F D L++ +++ + + +E FT+ + L+
Sbjct: 74 GLPKTLKNTAGTAAETARAFGDRLAS--RIDPVAVHWHDERFTTVTAQQALHASGRTVKS 131
Query: 140 YKTILDKFAAVGILQEYLD 158
+ ++D+ AAV ILQ +LD
Sbjct: 132 SRAVIDQAAAVAILQGWLD 150
>gi|146341407|ref|YP_001206455.1| Holliday junction resolvase-like protein [Bradyrhizobium sp. ORS
278]
gi|167012698|sp|A4YWF9.1|RUVX_BRASO RecName: Full=Putative Holliday junction resolvase
gi|146194213|emb|CAL78235.1| putative Holliday junction resolvase [Bradyrhizobium sp. ORS 278]
Length = 161
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 73/141 (51%), Gaps = 6/141 (4%)
Query: 20 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFI 79
+RG +GLD+G K +G+++SDP ++A+ + + RK D A ++ +E + GF+
Sbjct: 17 ERGALVGLDLGTKTIGVAVSDPDRRLATGVETIQRKAFKAD--AARLLAICAERKVVGFV 74
Query: 80 VGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
+G P N + Q + F +L+ L D+ W+E ++ VE L +D+
Sbjct: 75 LGLPINMDGSEGPRAQSTRAFARNLAG---LTDLPIGLWDERLSTAAVERELIGMDVSRA 131
Query: 139 EYKTILDKFAAVGILQEYLDN 159
+ ++D AA+ ILQ LD
Sbjct: 132 KRAEVIDTHAAIFILQGALDR 152
>gi|440780838|ref|ZP_20959309.1| Holliday junction resolvase-like protein [Clostridium pasteurianum
DSM 525]
gi|440221426|gb|ELP60631.1| Holliday junction resolvase-like protein [Clostridium pasteurianum
DSM 525]
Length = 135
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 4/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD+GD+ +G+++SDP A ++ + RK D+ E+ L ++N+E I G
Sbjct: 2 RILGLDIGDRTIGVAVSDPLGYTAQGITTIRRKNEEKDI--EELIKLCKQYNVETIISGL 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N N Q + + K+ D+ W+E T+ + DL + K
Sbjct: 60 PKN--MNGTMGPQSEKVLQFCEILKEKIDIPIKMWDERLTTVAAHKAMLEADLSRSKRKK 117
Query: 143 ILDKFAAVGILQEYLDN 159
I+DK AA ILQ YLD+
Sbjct: 118 IVDKIAATYILQGYLDS 134
>gi|225181970|ref|ZP_03735403.1| Holliday junction resolvase YqgF [Dethiobacter alkaliphilus AHT 1]
gi|225167332|gb|EEG76150.1| Holliday junction resolvase YqgF [Dethiobacter alkaliphilus AHT 1]
Length = 138
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 68/136 (50%), Gaps = 6/136 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVGD+ +G++ SD A L V+ R DL + R L++E+ + +VGY
Sbjct: 2 RILGLDVGDRTIGVAASDALGWTAQGLEVIRRTTWENDL--KRIRELVAEYEVSLIVVGY 59
Query: 83 PFNRQQNAADAVQV-KLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N ++ + F D LSA L W+E T+ E L D+ + K
Sbjct: 60 PKNMNNTVGPRAKLSEEFADKLSAELNL---PVKLWDERLTTMEAERTLLSADMSRAKRK 116
Query: 142 TILDKFAAVGILQEYL 157
++DK AAV ILQ YL
Sbjct: 117 KVIDKMAAVLILQNYL 132
>gi|365888902|ref|ZP_09427634.1| putative Holliday junction resolvase [Bradyrhizobium sp. STM 3809]
gi|365335381|emb|CCE00165.1| putative Holliday junction resolvase [Bradyrhizobium sp. STM 3809]
Length = 161
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 72/141 (51%), Gaps = 6/141 (4%)
Query: 20 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFI 79
+RG +GLD+G K +G+++SDP ++A+ + + RK D A ++ +E + GF+
Sbjct: 17 ERGALVGLDLGTKTIGVAVSDPDRRLATGVETIQRKAFKAD--AARLLAICAERKVVGFV 74
Query: 80 VGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
+G P N + Q + F +L+ L D+ W+E ++ VE L +D+
Sbjct: 75 LGLPINMDGSEGPRAQSTRAFARNLAG---LTDLPIGLWDERLSTAAVERELIGMDVSRA 131
Query: 139 EYKTILDKFAAVGILQEYLDN 159
++D AA+ ILQ LD
Sbjct: 132 RRAEVIDTHAAIFILQGALDR 152
>gi|307946447|ref|ZP_07661782.1| putative Holliday junction resolvase [Roseibium sp. TrichSKD4]
gi|307770111|gb|EFO29337.1| putative Holliday junction resolvase [Roseibium sp. TrichSKD4]
Length = 160
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 6/137 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLD+G K +GL++SD IA+P+ + RKK T D AE + ++ + G ++G
Sbjct: 21 RLIGLDLGTKTIGLALSDLGRGIATPMETIRRKKFTQD--AEKLLDICAKQEVSGLVLGL 78
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + Q + F +LS +L YW+E ++ V L D +
Sbjct: 79 PLNMDGSEGPRAQATRAFCRNLSQKTEL---PITYWDERLSTAAVTRTLLEADSSRAKRA 135
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ +LD
Sbjct: 136 EVVDKMAAAFILQGFLD 152
>gi|294084181|ref|YP_003550939.1| Holliday junction resolvase [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292663754|gb|ADE38855.1| Putative Holliday junction resolvase [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 159
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 78/146 (53%), Gaps = 4/146 (2%)
Query: 14 LKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEF 73
+K+ +S R LGLD+G K +GL++SD KIA+P+ +L R K T D+ AE F+ L+ E
Sbjct: 9 VKQSISDGQRLLGLDIGKKTIGLALSDAGLKIATPVKILYRTKFTPDV-AELFK-LVDEQ 66
Query: 74 NLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPL 133
N+ G ++G+P N + + + D A ++ D+ + +E +++ VE +
Sbjct: 67 NVGGLVLGWPVN--MDGSTGPRCDSTRDFAYALMRIRDVPVFFQDERLSTQAVESAMIAA 124
Query: 134 DLHPVEYKTILDKFAAVGILQEYLDN 159
D+ + D AA ILQ LD
Sbjct: 125 DMTRAKRAVRRDALAAGWILQSALDT 150
>gi|398818110|ref|ZP_10576709.1| RNAse H-fold protein YqgF [Brevibacillus sp. BC25]
gi|398028908|gb|EJL22411.1| RNAse H-fold protein YqgF [Brevibacillus sp. BC25]
Length = 138
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 4/140 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVGDK +G+++SD A + + R+ DL L+S++ + F+VG
Sbjct: 3 RLMGLDVGDKTIGVAVSDELGWTAQGVETIKRQSKEKDL--ARLSELVSQYQIGAFVVGL 60
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N ++ L ++ + W+E T+ E +L D+ + KT
Sbjct: 61 PKNMNGTIGPRAEMCQAFGKL--LEERTSLPVHMWDERLTTMAAERMLISADVSRQKRKT 118
Query: 143 ILDKFAAVGILQEYLDNANR 162
++DK AA+ ILQ YLD +R
Sbjct: 119 VIDKMAAILILQGYLDAKSR 138
>gi|333896974|ref|YP_004470848.1| Holliday junction resolvase [Thermoanaerobacterium xylanolyticum
LX-11]
gi|333112239|gb|AEF17176.1| Holliday junction resolvase [Thermoanaerobacterium xylanolyticum
LX-11]
Length = 140
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 74/137 (54%), Gaps = 5/137 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVGDK +G+++SDP IA + + R+ ++D + + +I F +E +VG+
Sbjct: 2 RTIGLDVGDKTIGIAVSDPSGLIAQGIKTIRRE--SLDNDVFEIKKIIDAFKVEEIVVGF 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTS-KGVELLLNPLDLHPVEYK 141
P N N Q + I+ + K+ D+ W+E T+ + +L+ D+ + K
Sbjct: 60 PKN--MNGTIGAQGQKVINFVEYLKEEIDLPIMLWDERLTTVEANRMLVENADMRRDKRK 117
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 118 KVIDKLAATIILQGYLD 134
>gi|16803542|ref|NP_465027.1| Holliday junction resolvase-like protein [Listeria monocytogenes
EGD-e]
gi|254828264|ref|ZP_05232951.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
gi|254912176|ref|ZP_05262188.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|254936504|ref|ZP_05268201.1| conserved hypothetical protein [Listeria monocytogenes F6900]
gi|255018845|ref|ZP_05290971.1| Holliday junction resolvase-like protein [Listeria monocytogenes
FSL F2-515]
gi|290893861|ref|ZP_06556839.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
gi|315282410|ref|ZP_07870829.1| putative Holliday junction resolvase [Listeria marthii FSL S4-120]
gi|386026875|ref|YP_005947651.1| putative Holliday junction resolvase [Listeria monocytogenes M7]
gi|386043813|ref|YP_005962618.1| hypothetical protein [Listeria monocytogenes 10403S]
gi|386047154|ref|YP_005965486.1| hypothetical protein [Listeria monocytogenes J0161]
gi|386050478|ref|YP_005968469.1| hypothetical protein [Listeria monocytogenes FSL R2-561]
gi|386053755|ref|YP_005971313.1| hypothetical protein [Listeria monocytogenes Finland 1998]
gi|422409731|ref|ZP_16486692.1| putative Holliday junction resolvase [Listeria monocytogenes FSL
F2-208]
gi|32130047|sp|Q8Y723.1|RUVX_LISMO RecName: Full=Putative Holliday junction resolvase
gi|16410931|emb|CAC99580.1| lmo1502 [Listeria monocytogenes EGD-e]
gi|258600652|gb|EEW13977.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
gi|258609098|gb|EEW21706.1| conserved hypothetical protein [Listeria monocytogenes F6900]
gi|290556578|gb|EFD90114.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
gi|293590149|gb|EFF98483.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|313608700|gb|EFR84531.1| putative Holliday junction resolvase [Listeria monocytogenes FSL
F2-208]
gi|313613944|gb|EFR87669.1| putative Holliday junction resolvase [Listeria marthii FSL S4-120]
gi|336023456|gb|AEH92593.1| putative Holliday junction resolvase [Listeria monocytogenes M7]
gi|345534145|gb|AEO03586.1| hypothetical protein LMOG_00196 [Listeria monocytogenes J0161]
gi|345537047|gb|AEO06487.1| hypothetical protein LMRG_01468 [Listeria monocytogenes 10403S]
gi|346424324|gb|AEO25849.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-561]
gi|346646406|gb|AEO39031.1| conserved hypothetical protein [Listeria monocytogenes Finland
1998]
Length = 138
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 67/140 (47%), Gaps = 4/140 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A + + +N + + L+ E+ +E +VG
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGL 61
Query: 83 PFNRQQN-AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N A K++ + L A L W+E T+ E L D+ + K
Sbjct: 62 PKNMNNTIGPRAESSKIYAEVLEARIGL---PVVLWDERLTTSAAERTLIEADVSRKKRK 118
Query: 142 TILDKFAAVGILQEYLDNAN 161
++DK AAV ILQ YLD N
Sbjct: 119 EVIDKLAAVMILQSYLDTTN 138
>gi|414167198|ref|ZP_11423427.1| RNAse H-fold protein YqgF [Afipia clevelandensis ATCC 49720]
gi|410891015|gb|EKS38813.1| RNAse H-fold protein YqgF [Afipia clevelandensis ATCC 49720]
Length = 163
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 73/140 (52%), Gaps = 6/140 (4%)
Query: 20 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFI 79
+RG +GLD+G K +G+++SDP K+A+ + + RK T D A +L E + GFI
Sbjct: 17 ERGALIGLDLGTKTIGVAVSDPDRKLATGIETIQRKTFTAD--AARLLALSGERQVVGFI 74
Query: 80 VGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
+G P N + Q + F + + + ++ W+E ++ VE L +D+
Sbjct: 75 LGLPINMDGSEGPRAQSTRAFARNFA---RQTELAIGLWDERLSTVAVERELIGMDMSRA 131
Query: 139 EYKTILDKFAAVGILQEYLD 158
+ ++D+ AA+ ILQ LD
Sbjct: 132 KRAKVIDEHAAIFILQGALD 151
>gi|238916712|ref|YP_002930229.1| Holliday junction resolvase [Eubacterium eligens ATCC 27750]
gi|259495704|sp|C4Z578.1|RUVX_EUBE2 RecName: Full=Putative Holliday junction resolvase
gi|238872072|gb|ACR71782.1| putative Holliday junction resolvase [Eubacterium eligens ATCC
27750]
Length = 140
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 72/141 (51%), Gaps = 3/141 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNT-IDLMAEDFRSLISEFNLEGFIVG 81
R +GLDVG K VG+++SDP A P + RK+N + +ISE+++ +VG
Sbjct: 2 RIIGLDVGTKTVGVALSDPLGITAQPFETITRKENNKLRRTYARIEQIISEYDVTEIVVG 61
Query: 82 YPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
YP N + + K + +A ++ + W+E T+ + +L + K
Sbjct: 62 YPKNMDDTIGE--RAKACEEFAAALERRTGLPVTLWDERLTTVEADEVLEECGMRRENRK 119
Query: 142 TILDKFAAVGILQEYLDNANR 162
T++D+ AAV IL+ Y+++ +
Sbjct: 120 TVIDQLAAVFILRGYMESKQK 140
>gi|323483777|ref|ZP_08089157.1| hypothetical protein HMPREF9474_00906 [Clostridium symbiosum
WAL-14163]
gi|323692750|ref|ZP_08106978.1| hypothetical protein HMPREF9475_01841 [Clostridium symbiosum
WAL-14673]
gi|355622555|ref|ZP_09046701.1| hypothetical protein HMPREF1020_00780 [Clostridium sp. 7_3_54FAA]
gi|323402968|gb|EGA95286.1| hypothetical protein HMPREF9474_00906 [Clostridium symbiosum
WAL-14163]
gi|323503192|gb|EGB19026.1| hypothetical protein HMPREF9475_01841 [Clostridium symbiosum
WAL-14673]
gi|354822910|gb|EHF07257.1| hypothetical protein HMPREF1020_00780 [Clostridium sp. 7_3_54FAA]
Length = 163
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 72/147 (48%), Gaps = 4/147 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRK-KNTIDLMAEDFRSLISEFNLEGFIVG 81
R LGLD G K G+++SDP A L + R+ +N + LI E+ +E ++G
Sbjct: 16 RVLGLDFGSKTTGVAVSDPLGFTAQGLETITREDENKLRRTCARIEELIREYQIETIVLG 75
Query: 82 YPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
YP N + + V+ L ++ ++ + W+E T+ E +L + K
Sbjct: 76 YPKNMNNTSGERVEKTLAFKEM--LERRTGLSVILWDERLTTTAAEQILIESGVRRENRK 133
Query: 142 TILDKFAAVGILQEYLDN-ANRKVNLK 167
++DK AA ILQ YLD+ A KVN +
Sbjct: 134 AVIDKVAASLILQGYLDSLAISKVNTQ 160
>gi|148256069|ref|YP_001240654.1| Holliday junction resolvase-like protein [Bradyrhizobium sp. BTAi1]
gi|167012697|sp|A5EKQ4.1|RUVX_BRASB RecName: Full=Putative Holliday junction resolvase
gi|146408242|gb|ABQ36748.1| putative Holliday junction resolvase [Bradyrhizobium sp. BTAi1]
Length = 161
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 72/140 (51%), Gaps = 6/140 (4%)
Query: 20 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFI 79
+RG +GLD+G K +G+++SDP ++A+ + + RK D A ++ SE + GF+
Sbjct: 17 ERGALVGLDLGTKTIGVAVSDPDRRLATGVETIQRKAFKAD--AARLLAISSERKVVGFV 74
Query: 80 VGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
+G P N + Q + F +L+ L D+ W+E ++ VE L +D+
Sbjct: 75 LGLPINMDGSEGPRAQSTRAFARNLA---NLTDLPIGLWDERLSTAAVERELIGMDVSRA 131
Query: 139 EYKTILDKFAAVGILQEYLD 158
++D AA+ ILQ LD
Sbjct: 132 RRAEVIDTHAAIFILQGALD 151
>gi|347757821|ref|YP_004865383.1| hypothetical protein MICA_1053 [Micavibrio aeruginosavorus ARL-13]
gi|347590339|gb|AEP09381.1| conserved hypothetical protein [Micavibrio aeruginosavorus ARL-13]
Length = 162
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 79/144 (54%), Gaps = 14/144 (9%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLD+G K +G++ISD + IA+P+ V+ R K T D++ + +I ++++ G+++GY
Sbjct: 18 RLMGLDLGTKTIGVAISDSAHSIATPVRVVQRTKFTRDIV--ELGKIIRDYDIGGYVLGY 75
Query: 83 PFNRQQNA---ADAVQV----KLFIDDLSATKKLEDMKYAYWNEGFTSKGV-ELLLNPLD 134
P N DAVQ L D+ K A W+E ++ + + L++ +D
Sbjct: 76 PLNMDGTMGPRCDAVQSFAAEMLNHPDIFGPKPW----IALWDERLSTAAMTDFLIDTVD 131
Query: 135 LHPVEYKTILDKFAAVGILQEYLD 158
+ + K ++DK AA ILQ LD
Sbjct: 132 ISRTKRKQVIDKLAAQYILQGALD 155
>gi|158424464|ref|YP_001525756.1| holliday junction resolvase [Azorhizobium caulinodans ORS 571]
gi|158331353|dbj|BAF88838.1| holliday junction resolvase [Azorhizobium caulinodans ORS 571]
Length = 185
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 71/140 (50%), Gaps = 6/140 (4%)
Query: 20 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFI 79
+RG LGLD+G K +G++ DP ++A+ + + R K T D AE L SE F+
Sbjct: 44 ERGSLLGLDLGTKTIGVATCDPDRRLATVVETVKRTKFTQD--AERLMVLASERKAVAFV 101
Query: 80 VGYPFNRQQNAADAVQV-KLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
+G P N + VQ + F + + +L + A+W+E ++ VE L D+
Sbjct: 102 LGLPLNMDGSEGPRVQASRAFARNFA---RLSGLPIAFWDERLSTVAVERALISADVSRA 158
Query: 139 EYKTILDKFAAVGILQEYLD 158
+ ++D+ AA ILQ +D
Sbjct: 159 KRANVIDQHAAAFILQGAID 178
>gi|338974884|ref|ZP_08630240.1| putative Holliday junction resolvase [Bradyrhizobiaceae bacterium
SG-6C]
gi|338231979|gb|EGP07113.1| putative Holliday junction resolvase [Bradyrhizobiaceae bacterium
SG-6C]
Length = 163
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 72/140 (51%), Gaps = 6/140 (4%)
Query: 20 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFI 79
+RG +GLD+G K +G+++SDP K+A+ + + RK T D A +L E + GFI
Sbjct: 17 ERGALIGLDLGTKTIGVAVSDPDRKLATGIETIQRKTFTAD--AARLLALSGERQVVGFI 74
Query: 80 VGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
+G P N + Q + F + + + ++ W+E ++ VE L +D+
Sbjct: 75 LGLPINMDGSEGPRAQSTRAFARNFA---RQTELAIGLWDERLSTVAVERELIGMDMSRA 131
Query: 139 EYKTILDKFAAVGILQEYLD 158
++D+ AA+ ILQ LD
Sbjct: 132 RRAKVIDEHAAIFILQGALD 151
>gi|404446976|ref|ZP_11012067.1| Holliday junction resolvase-like protein [Mycobacterium vaccae ATCC
25954]
gi|403649594|gb|EJZ04949.1| Holliday junction resolvase-like protein [Mycobacterium vaccae ATCC
25954]
Length = 175
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 78/149 (52%), Gaps = 4/149 (2%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV 80
RGR LG+DVG +G+++SDP +A+P+ + R+K D +L+ E+++ +V
Sbjct: 25 RGRRLGVDVGTVRIGVAVSDPDAVLATPVETVRREKRG-DRHVRRLVALVGEYDVVEVVV 83
Query: 81 GYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
G P A + Q + + D A +++ + +E FT+ + L +
Sbjct: 84 GLPRTLADRAGTSAQDAVDVADTLA-RRIAPVPVRLSDERFTTVTAQRALREAGVRSRGQ 142
Query: 141 KTILDKFAAVGILQEYLDNANRKVNLKAN 169
++++D+ AAVGILQ +LD R+ L A+
Sbjct: 143 RSVIDQAAAVGILQNWLD--QRRAALPAH 169
>gi|342216621|ref|ZP_08709268.1| RNAse H domain protein, YqgF family [Peptoniphilus sp. oral taxon
375 str. F0436]
gi|341587511|gb|EGS30911.1| RNAse H domain protein, YqgF family [Peptoniphilus sp. oral taxon
375 str. F0436]
Length = 139
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 6/137 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVGD +G+++SDP +AS L+R D+ E+ RS+I + ++ +VG
Sbjct: 2 RVLGLDVGDVRIGIAVSDPTALVASAYKTLVRTSKWKDV--EEIRSIIEDLKVDRVVVGL 59
Query: 83 PFNRQQN-AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N +V+ F++ L L+ Y +E T+ E +L D+ K
Sbjct: 60 PKNMNNTLGPQGKKVQKFVNALKHNYPLD---LVYIDERLTTVSAERILIEADVSRKNRK 116
Query: 142 TILDKFAAVGILQEYLD 158
++D+ AA ILQ+YLD
Sbjct: 117 KVVDQVAATYILQQYLD 133
>gi|300854403|ref|YP_003779387.1| Holliday junction resolvase [Clostridium ljungdahlii DSM 13528]
gi|300434518|gb|ADK14285.1| predicted Holliday junction resolvase [Clostridium ljungdahlii DSM
13528]
Length = 137
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 72/140 (51%), Gaps = 4/140 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD+GD+ +G+++SDP A ++ + RK D+ E+ +S+ ++ +E + G
Sbjct: 2 RILGLDIGDRTIGVALSDPLGITAQGITTVRRKNQEKDI--EELKSICEKYGVECIVSGL 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N N +Q + + ++ + W+E T+ + DL + K
Sbjct: 60 PKN--MNGTLGLQSEKVLSFCKVIEQSIKVPIKMWDERLTTVAAHRAMIEGDLSRAKRKK 117
Query: 143 ILDKFAAVGILQEYLDNANR 162
I+DK AA+ ILQ YLD+ ++
Sbjct: 118 IVDKMAAIYILQGYLDSISK 137
>gi|116629094|ref|YP_814266.1| Holliday junction resolvase-like protein [Lactobacillus gasseri
ATCC 33323]
gi|238853837|ref|ZP_04644202.1| conserved hypothetical protein [Lactobacillus gasseri 202-4]
gi|282852131|ref|ZP_06261488.1| RNAse YqgF [Lactobacillus gasseri 224-1]
gi|311111120|ref|ZP_07712517.1| putative Holliday junction resolvase [Lactobacillus gasseri MV-22]
gi|420147610|ref|ZP_14654885.1| Putative Holliday junction resolvase [Lactobacillus gasseri CECT
5714]
gi|122273908|sp|Q045P4.1|RUVX_LACGA RecName: Full=Putative Holliday junction resolvase
gi|116094676|gb|ABJ59828.1| RNase H-like ribonuclease [Lactobacillus gasseri ATCC 33323]
gi|238833532|gb|EEQ25804.1| conserved hypothetical protein [Lactobacillus gasseri 202-4]
gi|282556695|gb|EFB62300.1| RNAse YqgF [Lactobacillus gasseri 224-1]
gi|311066274|gb|EFQ46614.1| putative Holliday junction resolvase [Lactobacillus gasseri MV-22]
gi|398400757|gb|EJN54288.1| Putative Holliday junction resolvase [Lactobacillus gasseri CECT
5714]
Length = 143
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 79/144 (54%), Gaps = 7/144 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K VG++ISDP A L + ++ R L+ ++++EGF++G
Sbjct: 2 RLLGLDVGSKTVGVAISDPLGITAQELETIKIDESKFSFGMRQIRKLVRKYDVEGFVLGL 61
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTS-KGVELLLNPLDLHP-VE 139
P N ++ +V+ K + + L K+ D+ Y +E T+ + +L+ +H VE
Sbjct: 62 PKNMDGSSGHSVERSKQYGERL---KEKFDLPVHYMDERLTTVQADRILVQEAGVHDRVE 118
Query: 140 YKTILDKFAAVGILQEYLDNANRK 163
K ++D+ AAV ILQ YL+ A RK
Sbjct: 119 RKKVIDQMAAVLILQSYLE-ATRK 141
>gi|424835606|ref|ZP_18260269.1| Holliday junction resolvase-like protein [Clostridium sporogenes PA
3679]
gi|365977989|gb|EHN14085.1| Holliday junction resolvase-like protein [Clostridium sporogenes PA
3679]
Length = 137
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 72/140 (51%), Gaps = 4/140 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD+GD+ +G++ISDP A ++ + RK DL E+ + + E+ ++ + G
Sbjct: 2 RILGLDIGDRTIGVAISDPLGFTAQGITTIRRKSEAYDL--EEIKKICDEYEVDTIVSGL 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N N Q + ++ K+ +++ W+E T+ + DL + K
Sbjct: 60 PKN--MNGTLGPQSEKVLEFCDLIKEHVNIEIKMWDERLTTVAATRAMLEADLSRSKRKK 117
Query: 143 ILDKFAAVGILQEYLDNANR 162
I+DK AA ILQ YLD+ ++
Sbjct: 118 IVDKIAATYILQGYLDSLSK 137
>gi|291548156|emb|CBL21264.1| conserved hypothetical protein TIGR00250 [Ruminococcus sp. SR1/5]
Length = 150
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 67/139 (48%), Gaps = 3/139 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKK-NTIDLMAEDFRSLISEFNLEGFIVG 81
R LGLD G K VG+++SDP A + + RK+ N + +ISE+ + ++G
Sbjct: 2 RVLGLDYGSKTVGVAVSDPLGLTAQGVETVWRKQENKLRRTLARIEEIISEYQVTEIVLG 61
Query: 82 YPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
YP N + + L ++ +K + W+E T+ + L +H + K
Sbjct: 62 YPKNMNNTVGERAEKSLEFKEM--LEKRTGLPVVMWDERLTTMAADRTLEETGVHKEDRK 119
Query: 142 TILDKFAAVGILQEYLDNA 160
LD+ AAV ILQ YLD A
Sbjct: 120 QYLDQVAAVFILQGYLDAA 138
>gi|163816752|ref|ZP_02208115.1| hypothetical protein COPEUT_02942 [Coprococcus eutactus ATCC 27759]
gi|158448009|gb|EDP25004.1| RNAse H domain protein, YqgF family [Coprococcus eutactus ATCC
27759]
Length = 149
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 69/146 (47%), Gaps = 12/146 (8%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNT--------IDLMAEDFRSLISEFN 74
R LGLD G K VG+++SDP A PL + RK I+ + E++ + +
Sbjct: 2 RVLGLDYGTKTVGVAVSDPLEITAQPLETIERKSAGKLRQTLARIEAIIEEYGAAGQQEK 61
Query: 75 LEGFIVGYPFNRQQNAADAVQVKL-FIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPL 133
+E ++GYP N D + + F +DL LE W+E T+ E +L
Sbjct: 62 IEKIVLGYPKNMNNTEGDRCEATVSFKNDLERRTGLE---VVLWDERLTTVEAERILMDS 118
Query: 134 DLHPVEYKTILDKFAAVGILQEYLDN 159
+ KT +DK AA ILQ YLD+
Sbjct: 119 GVRRENRKTYIDKMAAAVILQNYLDS 144
>gi|456354799|dbj|BAM89244.1| putative holliday junction resolvase [Agromonas oligotrophica S58]
Length = 161
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 72/140 (51%), Gaps = 6/140 (4%)
Query: 20 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFI 79
+RG +GLD+G K +G+++SDP ++A+ + + RK D A ++ +E N+ GF+
Sbjct: 17 ERGALVGLDLGTKTIGVAVSDPDRRLATGVETIQRKAFKAD--AARLLAISAERNVVGFV 74
Query: 80 VGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
+G P N + Q + F +L+ L + W+E ++ VE L LD+
Sbjct: 75 LGLPINMDGSEGPRAQSTRAFARNLA---NLTTLPIGLWDERLSTAAVERELIGLDVSRA 131
Query: 139 EYKTILDKFAAVGILQEYLD 158
++D AA+ ILQ LD
Sbjct: 132 RRAEVIDTHAAIFILQGALD 151
>gi|115525369|ref|YP_782280.1| Holliday junction resolvase-like protein [Rhodopseudomonas
palustris BisA53]
gi|122295574|sp|Q07L84.1|RUVX_RHOP5 RecName: Full=Putative Holliday junction resolvase
gi|115519316|gb|ABJ07300.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris
BisA53]
Length = 163
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 72/138 (52%), Gaps = 6/138 (4%)
Query: 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 81
G +GLD+G K +G+++SDP ++A+ + +LRK T D A +L +E G ++G
Sbjct: 19 GALIGLDLGTKTIGVAVSDPARRLATGVETILRKTFTTD--AARLLALATERKAVGLVLG 76
Query: 82 YPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
P N + Q + F +L+ +L ++ W+E ++ VE L D+ +
Sbjct: 77 LPINMDASEGPRAQSTRAFARNLA---RLTELPIGLWDERLSTAAVERELIANDVSRAKR 133
Query: 141 KTILDKFAAVGILQEYLD 158
++D+ AA+ ILQ LD
Sbjct: 134 AKVIDEHAAIFILQGALD 151
>gi|20807699|ref|NP_622870.1| Holliday junction resolvase-like protein [Thermoanaerobacter
tengcongensis MB4]
gi|32130041|sp|Q8R5S9.1|RUVX_THETN RecName: Full=Putative Holliday junction resolvase
gi|20516249|gb|AAM24474.1| predicted endonuclease involved in recombination
[Thermoanaerobacter tengcongensis MB4]
Length = 139
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 75/138 (54%), Gaps = 5/138 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVGDK +G++ISD + IA ++ + RK D+ A ++ ++++E +VG
Sbjct: 2 RVLGLDVGDKTIGVAISDVSSTIAQGITTIRRKSFVEDVKA--IEEIVKKYSVEKVVVGL 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N N + Q + I +++ + +W+E T+ E L+ +D+ + K
Sbjct: 60 PKN--MNGSIGPQGEKVIKFGEKLREVLRIPVVFWDERLTTLQAERFLIEGVDMSRGKRK 117
Query: 142 TILDKFAAVGILQEYLDN 159
++DK AA ILQ YLD+
Sbjct: 118 KVIDKLAATIILQSYLDS 135
>gi|188587786|ref|YP_001920521.1| Holliday junction resolvase-like protein [Clostridium botulinum E3
str. Alaska E43]
gi|251780381|ref|ZP_04823301.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
E Beluga']
gi|226725502|sp|B2V3W4.1|RUVX_CLOBA RecName: Full=Putative Holliday junction resolvase
gi|188498067|gb|ACD51203.1| conserved hypothetical protein [Clostridium botulinum E3 str.
Alaska E43]
gi|243084696|gb|EES50586.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
E Beluga']
Length = 137
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 72/140 (51%), Gaps = 4/140 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD+G K +G++ISDP A ++ + R D+ E+ R + E+ +E ++G
Sbjct: 2 RILGLDLGKKTIGVAISDPLGFTAQGITTIRRANKEKDM--EELRKICDEYKVETIVIGL 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N + ++ + + L ++ ++K +W+E T+ + DL + K
Sbjct: 60 PKNMNGTIGPSGEIAMEMGKL--VEEALNIKVEFWDERLTTVAAHKAMLEADLSRSKRKK 117
Query: 143 ILDKFAAVGILQEYLDNANR 162
I+DK A+ ILQ YLD ++
Sbjct: 118 IVDKVASTYILQGYLDRISK 137
>gi|346314619|ref|ZP_08856137.1| hypothetical protein HMPREF9022_01794 [Erysipelotrichaceae
bacterium 2_2_44A]
gi|345906143|gb|EGX75874.1| hypothetical protein HMPREF9022_01794 [Erysipelotrichaceae
bacterium 2_2_44A]
Length = 137
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 72/141 (51%), Gaps = 7/141 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD+G K +G+S+SD IA P+ + + + + E + I EF ++ ++G
Sbjct: 2 RILGLDLGSKTLGVSVSDALGMIARPVETIRFESDDYEAACEQVQPYIKEFQVKTAVLGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLE--DMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
P + + ++ L + KLE ++ W+E T+ E +L D+ +
Sbjct: 62 PKHMNGDVGIRGEISLMFKE-----KLEALGLEVVLWDERLTTVAAEKILISADVSRKKR 116
Query: 141 KTILDKFAAVGILQEYLDNAN 161
K I+D+ AAV ILQ YLD+ N
Sbjct: 117 KKIIDQMAAVQILQSYLDSKN 137
>gi|424890592|ref|ZP_18314191.1| RNAse H-fold protein YqgF [Rhizobium leguminosarum bv. trifolii
WSM2012]
gi|393172810|gb|EJC72855.1| RNAse H-fold protein YqgF [Rhizobium leguminosarum bv. trifolii
WSM2012]
Length = 164
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 75/148 (50%), Gaps = 8/148 (5%)
Query: 14 LKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMA-EDFRSLISE 72
+ ++ R GLD+G K +GLS+SD + A+P V+ R K TID A DF I+E
Sbjct: 9 MAETLAPRQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRIKFTIDAQALMDF--AIAE 66
Query: 73 FNLEGFIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLN 131
+ GF++G P N +A VQ + F+ ++ L +AYW+E ++ E L
Sbjct: 67 -KVAGFVIGLPMNMDGSAGPRVQATRAFVRNMEQKTAL---PFAYWDERLSTVAAERTLL 122
Query: 132 PLDLHPVEYKTILDKFAAVGILQEYLDN 159
+D+ + +D AA ILQ LD
Sbjct: 123 EMDVSRAKRAERIDSAAASFILQGALDR 150
>gi|333924397|ref|YP_004497977.1| Holliday junction resolvase [Desulfotomaculum carboxydivorans
CO-1-SRB]
gi|333749958|gb|AEF95065.1| Holliday junction resolvase [Desulfotomaculum carboxydivorans
CO-1-SRB]
Length = 140
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 71/139 (51%), Gaps = 5/139 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVGDK +G+++SDP A L V +R+ + +D ++ E+ +E +VG
Sbjct: 2 RVMGLDVGDKTIGVALSDPLGWTAQALEV-IRRGDNLDKDLNRLAEIVQEYQVEQILVGL 60
Query: 83 PFNRQQN-AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N +V FI+ L K+ D+ W+E ++ E L D+ + K
Sbjct: 61 PKNMNGTLGPQGEKVLAFIERL---KERIDLPVKTWDERLSTVAAERALLEADVSRSKRK 117
Query: 142 TILDKFAAVGILQEYLDNA 160
++DK AA ILQ YLD+
Sbjct: 118 KVIDKMAAAVILQGYLDSG 136
>gi|315303254|ref|ZP_07873898.1| putative Holliday junction resolvase [Listeria ivanovii FSL F6-596]
gi|313628366|gb|EFR96855.1| putative Holliday junction resolvase [Listeria ivanovii FSL F6-596]
Length = 138
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 66/140 (47%), Gaps = 4/140 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A + + + E + L+ E+ +E +VG
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGWTAQGVETIQIDEKRKQFGYERVKELVLEYEVEKVVVGL 61
Query: 83 PFNRQQN-AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N A K++ + L A L W+E T+ E L D+ + K
Sbjct: 62 PKNMNNTIGPRAESSKIYAEVLEARIGL---PVVLWDERLTTTAAERTLIEADVSRKKRK 118
Query: 142 TILDKFAAVGILQEYLDNAN 161
++DK AAV ILQ YLD N
Sbjct: 119 EVIDKLAAVMILQSYLDTTN 138
>gi|312622551|ref|YP_004024164.1| holliday junction resolvase yqgf [Caldicellulosiruptor
kronotskyensis 2002]
gi|312203018|gb|ADQ46345.1| Holliday junction resolvase YqgF [Caldicellulosiruptor
kronotskyensis 2002]
Length = 138
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 84/143 (58%), Gaps = 12/143 (8%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASP-LSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 81
R L LD+G+ VG++ISDP A P +++ LR K+ + E+ + +N+E ++G
Sbjct: 2 RILCLDIGNSRVGVAISDPLKITAQPVMTIELRNKD----LFEELDKIFQGYNIEKVVIG 57
Query: 82 YPFNRQQNAADAVQVKLFIDDLSATKKLE---DMKYAYWNEGFTSKGVELLLNPLDLHPV 138
YP ++ ++K ID++S +K+E +++ W+E F++K VE +++ +L+
Sbjct: 58 YPLSKLHPDQKDEKLKK-IDEIS--EKIESRYNVEIVKWDERFSTKAVERVIDE-ELNWK 113
Query: 139 EYKTILDKFAAVGILQEYLDNAN 161
K I+DK AAV ILQ YLD N
Sbjct: 114 RKKKIIDKVAAVYILQGYLDFYN 136
>gi|387818855|ref|YP_005679202.1| putative Holliday junction resolvase [Clostridium botulinum H04402
065]
gi|322806899|emb|CBZ04469.1| putative Holliday junction resolvase [Clostridium botulinum H04402
065]
Length = 137
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 72/140 (51%), Gaps = 4/140 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD+GD+ +G++ISDP A ++ + RK DL E+ + + ++ ++ + G
Sbjct: 2 RILGLDIGDRTIGIAISDPLGFTAQGITTIRRKSEAYDL--EEIKKICDKYEVDTIVSGL 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N N Q + ++ K+ +++ W+E T+ + DL + K
Sbjct: 60 PKN--MNGTLGPQSEKVLEFCDLIKEHLNIEIKMWDERLTTVAATRAMLEADLSRSKRKK 117
Query: 143 ILDKFAAVGILQEYLDNANR 162
I+DK AA ILQ YLD+ +R
Sbjct: 118 IVDKVAATYILQGYLDSLSR 137
>gi|154247845|ref|YP_001418803.1| Holliday junction resolvase YqgF [Xanthobacter autotrophicus Py2]
gi|154161930|gb|ABS69146.1| Holliday junction resolvase YqgF [Xanthobacter autotrophicus Py2]
Length = 176
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 12/157 (7%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV 80
RG LGLD+G K +G++ DP ++A+ + + R K T D A+ +L +E GF++
Sbjct: 23 RGALLGLDLGTKTIGVASCDPDRRVATVVETVQRTKFTAD--AQRLLALAAERRAVGFVL 80
Query: 81 GYPFNRQQNAADAVQV-KLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
G P N + Q + F +L+ +L + A W+E ++ VE L D+
Sbjct: 81 GLPLNMDASEGPRAQASRAFARNLA---RLTALPIALWDERLSTAAVERALISADVSRAR 137
Query: 140 YKTILDKFAAVGILQEYLDNANRKVNLKANVLRPIIN 176
++D+ AA IL+ L +R +VLRP N
Sbjct: 138 RAAVVDQHAAAFILEGALGFLSR------HVLRPAGN 168
>gi|291087071|ref|ZP_06345320.2| putative Holliday junction resolvase [Clostridium sp. M62/1]
gi|291076386|gb|EFE13750.1| RNAse H domain protein, YqgF family [Clostridium sp. M62/1]
Length = 175
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 68/139 (48%), Gaps = 5/139 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRK-KNTIDLMAEDFRSLISEFNLEGFIVG 81
R +GLD G K G+++SDP A L ++RK +N + LI E+ +E ++G
Sbjct: 37 RIMGLDFGSKTTGVAVSDPLGLTAQGLETIVRKDENKLRQTCARIEELIEEYQIEAIVLG 96
Query: 82 YPFNRQQNAAD-AVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
YP N A + A + + F + L ++ W+E T+ E +L +
Sbjct: 97 YPKNMNNTAGERAEKTESFKEML---ERRTGKPVILWDERLTTIAAERMLMESGVRRENR 153
Query: 141 KTILDKFAAVGILQEYLDN 159
K ++DK AA ILQ YLD+
Sbjct: 154 KAVIDKVAAALILQGYLDS 172
>gi|309775358|ref|ZP_07670363.1| putative Holliday junction resolvase [Erysipelotrichaceae bacterium
3_1_53]
gi|308916875|gb|EFP62610.1| putative Holliday junction resolvase [Erysipelotrichaceae bacterium
3_1_53]
Length = 137
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 69/139 (49%), Gaps = 3/139 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD+G K +G+S+SD IA P+ + + + D E + I EF + ++G
Sbjct: 2 RILGLDLGSKTLGVSVSDALGMIARPVETIRFESDDYDAAFEQVQKYIKEFQVTTAVLGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P + + ++ + + T LE W+E T+ E +L D+ + K
Sbjct: 62 PKHMNGDVGIRGEISVMFKEKLETLGLE---VVLWDERLTTVAAEKILISADVSRKKRKK 118
Query: 143 ILDKFAAVGILQEYLDNAN 161
I+D+ AAV ILQ YLD+ N
Sbjct: 119 IIDQMAAVQILQSYLDSKN 137
>gi|300362249|ref|ZP_07058425.1| crossover junction endodeoxyribonuclease [Lactobacillus gasseri
JV-V03]
gi|300353240|gb|EFJ69112.1| crossover junction endodeoxyribonuclease [Lactobacillus gasseri
JV-V03]
Length = 143
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 79/144 (54%), Gaps = 7/144 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K VG++ISDP A L + ++ R ++ ++++EGF++G
Sbjct: 2 RLLGLDVGSKTVGVAISDPLGITAQELETIKIDESKFSFGMRQIRKIVRKYDVEGFVLGL 61
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTS-KGVELLLNPLDLHP-VE 139
P N ++ +V+ K + + L K+ D+ Y +E T+ + +L+ +H VE
Sbjct: 62 PKNMDGSSGHSVERSKQYGERL---KEKFDLPVHYMDERLTTVQADRILVQEAGVHDRVE 118
Query: 140 YKTILDKFAAVGILQEYLDNANRK 163
K ++D+ AAV ILQ YL+ A RK
Sbjct: 119 RKKVIDQMAAVLILQSYLE-ATRK 141
>gi|187933084|ref|YP_001885374.1| Holliday junction resolvase-like protein [Clostridium botulinum B
str. Eklund 17B]
gi|226725503|sp|B2THN2.1|RUVX_CLOBB RecName: Full=Putative Holliday junction resolvase
gi|187721237|gb|ACD22458.1| conserved hypothetical protein [Clostridium botulinum B str. Eklund
17B]
Length = 137
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 72/140 (51%), Gaps = 4/140 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD+G K +G+++SDP A ++ + R D+ E+ R + E+ +E ++G
Sbjct: 2 RILGLDLGKKTIGVAVSDPLGFTAQGITTIRRANKEKDM--EELRKICDEYKVETIVIGL 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N + ++ + + L ++ ++K +W+E T+ + DL + K
Sbjct: 60 PKNMNGTIGPSGEIAMEMGKL--VEEALNIKVEFWDERLTTVAAHKAMLEADLSRSKRKK 117
Query: 143 ILDKFAAVGILQEYLDNANR 162
I+DK A+ ILQ YLD ++
Sbjct: 118 IVDKVASTYILQGYLDRISK 137
>gi|372278916|ref|ZP_09514952.1| Holliday junction resolvase-like protein [Oceanicola sp. S124]
Length = 156
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 6/135 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD G+K +G+++SD +A+PL + RKK T+D AE ++I+ +L G ++G P N
Sbjct: 21 GLDFGEKTIGVAVSDGLLSVATPLETIRRKKFTLD--AEALLAIIARRDLCGIVLGLPRN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
+ Q + F +L+ +L D+ +YW+E ++ E L D ++
Sbjct: 79 MDGSEGPRCQKTRAFARNLT---RLTDLPISYWDERLSTVAAERALLEADTSRRRRAEVI 135
Query: 145 DKFAAVGILQEYLDN 159
D AA ILQ LD
Sbjct: 136 DHVAASYILQGALDR 150
>gi|46907730|ref|YP_014119.1| Holliday junction resolvase-like protein [Listeria monocytogenes
serotype 4b str. F2365]
gi|47093424|ref|ZP_00231189.1| conserved hypothetical protein TIGR00250 [Listeria monocytogenes
str. 4b H7858]
gi|226224103|ref|YP_002758210.1| hypothetical protein Lm4b_01512 [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|254824439|ref|ZP_05229440.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
gi|254852126|ref|ZP_05241474.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
gi|254931437|ref|ZP_05264796.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
gi|255521191|ref|ZP_05388428.1| Holliday junction resolvase-like protein [Listeria monocytogenes
FSL J1-175]
gi|300764832|ref|ZP_07074822.1| conserved hypothetical protein [Listeria monocytogenes FSL N1-017]
gi|386732241|ref|YP_006205737.1| Holliday junction resolvase-like protein [Listeria monocytogenes
07PF0776]
gi|417316043|ref|ZP_12102701.1| Holliday junction resolvase-like protein [Listeria monocytogenes
J1816]
gi|424714377|ref|YP_007015092.1| Putative Holliday junction resolvase [Listeria monocytogenes
serotype 4b str. LL195]
gi|62900990|sp|Q71ZG8.1|RUVX_LISMF RecName: Full=Putative Holliday junction resolvase
gi|259495707|sp|C1KVE9.1|RUVX_LISMC RecName: Full=Putative Holliday junction resolvase
gi|46880999|gb|AAT04296.1| conserved hypothetical protein TIGR00250 [Listeria monocytogenes
serotype 4b str. F2365]
gi|47018203|gb|EAL08971.1| conserved hypothetical protein TIGR00250 [Listeria monocytogenes
str. 4b H7858]
gi|225876565|emb|CAS05274.1| Hypothetical protein of unknown function [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|258605429|gb|EEW18037.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
gi|293582988|gb|EFF95020.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
gi|293593675|gb|EFG01436.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
gi|300514508|gb|EFK41565.1| conserved hypothetical protein [Listeria monocytogenes FSL N1-017]
gi|328465540|gb|EGF36769.1| Holliday junction resolvase-like protein [Listeria monocytogenes
J1816]
gi|384390999|gb|AFH80069.1| Holliday junction resolvase-like protein [Listeria monocytogenes
07PF0776]
gi|424013561|emb|CCO64101.1| Putative Holliday junction resolvase [Listeria monocytogenes
serotype 4b str. LL195]
Length = 138
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 4/140 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A + + +N + + L+ E+ +E +VG
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGL 61
Query: 83 PFNRQQN-AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N A K++ + L + L W+E T+ E L D+ + K
Sbjct: 62 PKNMNNTIGPRAESSKIYAEVLESRIGL---PVVLWDERLTTSAAERTLIEADVSRKKRK 118
Query: 142 TILDKFAAVGILQEYLDNAN 161
++DK AAV ILQ YLD N
Sbjct: 119 EVIDKLAAVMILQSYLDTTN 138
>gi|295092925|emb|CBK82016.1| conserved hypothetical protein TIGR00250 [Coprococcus sp. ART55/1]
Length = 149
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 68/145 (46%), Gaps = 12/145 (8%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNT--------IDLMAEDFRSLISEFN 74
R LGLD G K VG+++SDP A PL + RK I+ + E++ +
Sbjct: 2 RILGLDYGTKTVGVAVSDPLKMTAQPLETIERKSANKLRQTLARIEAILEEYGAAGERDR 61
Query: 75 LEGFIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPL 133
+E ++GYP N + D + + F +DL LE W+E T+ E +L
Sbjct: 62 IELIVLGYPKNMNNSEGDRCEATQAFKEDLERRTGLE---VVLWDERLTTVEAERILMDS 118
Query: 134 DLHPVEYKTILDKFAAVGILQEYLD 158
+ KT +DK AA ILQ YLD
Sbjct: 119 GVRRENRKTYIDKMAAAVILQNYLD 143
>gi|385825404|ref|YP_005861746.1| hypothetical protein [Lactobacillus johnsonii DPC 6026]
gi|417837020|ref|ZP_12483260.1| putative Holliday junction resolvase [Lactobacillus johnsonii pf01]
gi|329666848|gb|AEB92796.1| hypothetical protein LJP_0462 [Lactobacillus johnsonii DPC 6026]
gi|338762699|gb|EGP13966.1| putative Holliday junction resolvase [Lactobacillus johnsonii pf01]
Length = 143
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 80/146 (54%), Gaps = 7/146 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K VG++ISDP A L + ++ R ++ ++++EGF++G
Sbjct: 2 RLLGLDVGSKTVGVAISDPLGITAQELETIKIDESKFSFGMRQIRKIVRKYDVEGFVLGL 61
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTS-KGVELLLNPLDLHP-VE 139
P N ++ +V+ K + + L K+ D+ Y +E T+ + +L+ +H VE
Sbjct: 62 PKNMDGSSGHSVERSKQYGERL---KEKFDLPVYYMDERLTTVQADRILVEEAGVHDRVE 118
Query: 140 YKTILDKFAAVGILQEYLDNANRKVN 165
K ++D+ AAV ILQ YL+ A RK N
Sbjct: 119 RKKVIDQMAAVLILQNYLE-ATRKDN 143
>gi|393200233|ref|YP_006462075.1| endonuclease [Solibacillus silvestris StLB046]
gi|406667420|ref|ZP_11075178.1| Putative Holliday junction resolvase [Bacillus isronensis B3W22]
gi|327439564|dbj|BAK15929.1| predicted endonuclease [Solibacillus silvestris StLB046]
gi|405384788|gb|EKB44229.1| Putative Holliday junction resolvase [Bacillus isronensis B3W22]
Length = 138
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 67/144 (46%), Gaps = 12/144 (8%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISD A + + + + E L+ E N+ F+VGY
Sbjct: 2 RIMGLDVGSKTVGVAISDALGWTAQGIETIKIDEAAGEFGIERINELVKEHNVTEFVVGY 61
Query: 83 PFNRQ-----QNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHP 137
P N + A KL D KL W+E T+ E +L D+
Sbjct: 62 PKNMNNTIGPRGEASESYKKLLEDTFGFPVKL-------WDERMTTMAAERMLIEADVSR 114
Query: 138 VEYKTILDKFAAVGILQEYLDNAN 161
+ K ++DK AAV ILQ YLD+ N
Sbjct: 115 KKRKQVIDKMAAVMILQGYLDSKN 138
>gi|312127726|ref|YP_003992600.1| holliday junction resolvase yqgf [Caldicellulosiruptor
hydrothermalis 108]
gi|311777745|gb|ADQ07231.1| Holliday junction resolvase YqgF [Caldicellulosiruptor
hydrothermalis 108]
Length = 138
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 81/141 (57%), Gaps = 8/141 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASP-LSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 81
R L LD+G+ VG++ISDP A P +++ LR K+ + E+ + +++E ++G
Sbjct: 2 RILCLDMGNSRVGVAISDPLKITAQPVMTIELRNKD----LFEELDKIFQRYSIEKVVIG 57
Query: 82 YPFNRQQNAADAVQVKLFIDDLSA-TKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
YP ++ ++K ID++S K +++ W+E F++K VE ++N +L+
Sbjct: 58 YPLSKLHPDQKDEKLKK-IDEISEKIKSRYNVEIVKWDERFSTKAVEKVING-ELNWKRK 115
Query: 141 KTILDKFAAVGILQEYLDNAN 161
K ++DK AAV ILQ YLD N
Sbjct: 116 KKVIDKVAAVYILQGYLDFYN 136
>gi|402821003|ref|ZP_10870563.1| hypothetical protein IMCC14465_17970 [alpha proteobacterium
IMCC14465]
gi|402510235|gb|EJW20504.1| hypothetical protein IMCC14465_17970 [alpha proteobacterium
IMCC14465]
Length = 178
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
+ +GLD+G K +GL++SD KIA+PL + R K T D A R + N+ ++G
Sbjct: 43 KLMGLDLGTKTIGLAVSDTMFKIATPLETIKRTKFTKDTQA--LREFEASHNIGALVIGL 100
Query: 83 PFNRQQNAADAVQV-KLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + VQ + F +L K D +W+E ++ V L D+ +
Sbjct: 101 PLNMDGSEGPRVQASRAFARNLLQQK---DQPIVFWDERLSTSAVTRTLIDADMSRAKRA 157
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ LD
Sbjct: 158 DVVDKMAAAYILQGVLD 174
>gi|209884927|ref|YP_002288784.1| Holliday junction resolvase-like protein [Oligotropha
carboxidovorans OM5]
gi|337741433|ref|YP_004633161.1| holliday junction resolvase [Oligotropha carboxidovorans OM5]
gi|386030449|ref|YP_005951224.1| putative holliday junction resolvase [Oligotropha carboxidovorans
OM4]
gi|209873123|gb|ACI92919.1| holliday junction resolvase YqgF [Oligotropha carboxidovorans OM5]
gi|336095517|gb|AEI03343.1| putative holliday junction resolvase [Oligotropha carboxidovorans
OM4]
gi|336099097|gb|AEI06920.1| putative holliday junction resolvase [Oligotropha carboxidovorans
OM5]
Length = 204
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 72/141 (51%), Gaps = 6/141 (4%)
Query: 19 SKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGF 78
+ RG +GLD+G K +G+++SDP ++A+ ++ + RK T D A + + E GF
Sbjct: 58 APRGALIGLDLGTKTIGVAVSDPDRRLATGVTTIQRKNFTKD--AAELLKISGERACAGF 115
Query: 79 IVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHP 137
++G P N + Q + F + + KL ++ W+E ++ VE L D+
Sbjct: 116 VLGLPINMDGSEGPRAQSTRAFARNFA---KLTELAIGLWDERLSTAAVERELLANDVSR 172
Query: 138 VEYKTILDKFAAVGILQEYLD 158
++D+ AA+ ILQ LD
Sbjct: 173 ARRAEVIDEHAAIFILQGALD 193
>gi|295092198|emb|CBK78305.1| conserved hypothetical protein TIGR00250 [Clostridium cf.
saccharolyticum K10]
Length = 140
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 68/139 (48%), Gaps = 5/139 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRK-KNTIDLMAEDFRSLISEFNLEGFIVG 81
R +GLD G K G+++SDP A L ++RK +N + LI E+ +E ++G
Sbjct: 2 RIMGLDFGSKTTGVAVSDPLGLTAQGLETIVRKDENKLRQTCARIEELIEEYQIEAIVLG 61
Query: 82 YPFNRQQNAAD-AVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
YP N A + A + + F + L ++ W+E T+ E +L +
Sbjct: 62 YPKNMNNTAGERAEKTESFKEML---ERRTGKPVILWDERLTTIAAERMLMESGVRRENR 118
Query: 141 KTILDKFAAVGILQEYLDN 159
K ++DK AA ILQ YLD+
Sbjct: 119 KAVIDKVAAALILQGYLDS 137
>gi|429728166|ref|ZP_19262906.1| RNAse H domain protein, YqgF family [Peptostreptococcus anaerobius
VPI 4330]
gi|429150357|gb|EKX93271.1| RNAse H domain protein, YqgF family [Peptostreptococcus anaerobius
VPI 4330]
Length = 140
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 69/138 (50%), Gaps = 6/138 (4%)
Query: 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 81
GR +GLD+GD +G+++SD A ++ + R+ D+ E + +I E N+ + G
Sbjct: 4 GRIMGLDIGDNTIGVAVSDLMGMTAQGITTIKRESKKKDI--EAIKDIIKEQNVNLIVSG 61
Query: 82 YPFNRQQNAA-DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
P N A +V F + + KLE +W+E T+ E +L D+
Sbjct: 62 LPKNMNGTVGPQAEKVMKFCELIKEETKLE---VEFWDERLTTVSAEKMLISGDVSRKNR 118
Query: 141 KTILDKFAAVGILQEYLD 158
K ++DK AAV ILQ YLD
Sbjct: 119 KKVIDKLAAVLILQNYLD 136
>gi|397906495|ref|ZP_10507295.1| Putative Holliday junction resolvase [Caloramator australicus RC3]
gi|397160452|emb|CCJ34632.1| Putative Holliday junction resolvase [Caloramator australicus RC3]
Length = 137
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 74/142 (52%), Gaps = 7/142 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD+G+K +G+++SDP IA L L RK D+ E+ +I+++ +E +VG
Sbjct: 2 RILGLDIGEKRIGIALSDPLGWIAQSLKTLERKSIKNDV--EEIIKIINDYQVEKVVVGL 59
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N ++ Q V F + L +E Y +E T+ E +L DL + K
Sbjct: 60 PKNMNGTLGESGQKVMNFCEKLLEKINIE---LIYEDERLTTMAAEKVLIDADLSRKKRK 116
Query: 142 TILDKFAAVGILQEYLDNANRK 163
++D AA ILQ YLD NRK
Sbjct: 117 GVIDSLAATFILQTYLDR-NRK 137
>gi|42518572|ref|NP_964502.1| Holliday junction resolvase-like protein [Lactobacillus johnsonii
NCC 533]
gi|62900996|sp|Q74KV1.1|RUVX_LACJO RecName: Full=Putative Holliday junction resolvase
gi|41582857|gb|AAS08468.1| hypothetical protein LJ_0476 [Lactobacillus johnsonii NCC 533]
Length = 143
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 80/146 (54%), Gaps = 7/146 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K VG++ISDP A L + ++ R ++ ++++EGF++G
Sbjct: 2 RLLGLDVGSKTVGVAISDPLGITAQELETIKIDESKFSFGLRQIRRIVRKYDVEGFVLGL 61
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTS-KGVELLLNPLDLHP-VE 139
P N ++ +V+ K + + L K+ D+ Y +E T+ + +L+ +H VE
Sbjct: 62 PKNMDGSSGHSVERSKQYGERL---KEKFDLPVYYMDERLTTVQADRILVEEAGVHDRVE 118
Query: 140 YKTILDKFAAVGILQEYLDNANRKVN 165
K ++D+ AAV ILQ YL+ A RK N
Sbjct: 119 RKKVIDQMAAVLILQNYLE-ATRKDN 143
>gi|86357479|ref|YP_469371.1| Holliday junction resolvase-like protein [Rhizobium etli CFN 42]
gi|146325597|sp|Q2K942.1|RUVX_RHIEC RecName: Full=Putative Holliday junction resolvase
gi|86281581|gb|ABC90644.1| probable holliday junction resolvase protein [Rhizobium etli CFN
42]
Length = 164
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+G K +GLSISD + A+P V+ R K TID A+ S + GF++G P N
Sbjct: 21 GLDLGTKTIGLSISDLGRRFATPRPVIRRIKFTID--AQALLDFASAEKVAGFVIGLPMN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
+A VQ + F+ ++ L + YW+E ++ E +L +D+ + +
Sbjct: 79 MDGSAGPRVQATRAFVRNMEQKTAL---PFIYWDERLSTVAAERVLIEMDVSRAKRAERI 135
Query: 145 DKFAAVGILQEYLDN 159
D AA ILQ LD
Sbjct: 136 DSAAASFILQGALDR 150
>gi|167628659|ref|YP_001679158.1| holliday junction resolvase [Heliobacterium modesticaldum Ice1]
gi|226725525|sp|B0TFZ0.1|RUVX_HELMI RecName: Full=Putative Holliday junction resolvase
gi|167591399|gb|ABZ83147.1| holliday junction resolvase, putative [Heliobacterium modesticaldum
Ice1]
Length = 149
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 4/136 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVGDK +G+++SD A ++ + R + DL E R L+ + +E + G
Sbjct: 2 RIMGLDVGDKTIGVAVSDLMGWTAQGVATIRRSRLAADL--EHLRELVKTYEVERIVCGL 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P R N + + S +K ++ YW+E T+ + L DL + K
Sbjct: 60 P--RNMNGTYGPRAEGIRKFGSLVEKKLNIPVDYWDERLTTVAAQKTLIAGDLSRAKRKQ 117
Query: 143 ILDKFAAVGILQEYLD 158
++DK AAV ILQ Y+D
Sbjct: 118 VVDKLAAVLILQNYMD 133
>gi|452991103|emb|CCQ97586.1| putative Holliday junction resolvase [Clostridium ultunense Esp]
Length = 136
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 72/136 (52%), Gaps = 4/136 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVGDK +G+++SDP A L + R+ N D+ + + +I E+N+ +VG
Sbjct: 3 RIMGLDVGDKTIGVAVSDPLLLTAQGLKTIARESNKKDI--KKIQDIIEEYNISKIVVGL 60
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N N Q + +D + K+ +++ +E T+ E +L D+ + K
Sbjct: 61 PKN--MNNTLGSQGEKVLDFVEKLKRKINIEIILEDERLTTVSAERILLEGDVSRKDRKK 118
Query: 143 ILDKFAAVGILQEYLD 158
I+DK AA ILQ YLD
Sbjct: 119 IIDKVAASYILQNYLD 134
>gi|169343788|ref|ZP_02864787.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens C
str. JGS1495]
gi|169298348|gb|EDS80438.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens C
str. JGS1495]
Length = 137
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 4/140 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD+G K +G+++SDP A ++ + R T D+ E + E+ +E +VG
Sbjct: 2 RILGLDIGSKTIGVAVSDPLGWTAQGVTTIKRDCYTKDV--EAVMKICKEYGVETIVVGM 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N N ++ + +K D K +W+E T+ + DL + K
Sbjct: 60 PKN--MNGTIGPSGEMVKNLCEQIEKSFDGKIEFWDERLTTVAAHRAMLEADLSRAKRKK 117
Query: 143 ILDKFAAVGILQEYLDNANR 162
I+DK AA ILQ YLD ++
Sbjct: 118 IVDKIAATYILQGYLDRISK 137
>gi|227888703|ref|ZP_04006508.1| crossover junction endodeoxyribonuclease [Lactobacillus johnsonii
ATCC 33200]
gi|227850730|gb|EEJ60816.1| crossover junction endodeoxyribonuclease [Lactobacillus johnsonii
ATCC 33200]
Length = 143
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 80/146 (54%), Gaps = 7/146 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K VG++ISDP A L + ++ R ++ ++++EGF++G
Sbjct: 2 RLLGLDVGSKTVGVAISDPLGITAQELETIKIDESKFSFGLRQIRKIVRKYDVEGFVLGL 61
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTS-KGVELLLNPLDLHP-VE 139
P N ++ +V+ K + + L K+ D+ Y +E T+ + +L+ +H VE
Sbjct: 62 PKNMDGSSGRSVERSKQYGERL---KEKFDLPVYYMDERLTTVQADRILVEEAGVHDRVE 118
Query: 140 YKTILDKFAAVGILQEYLDNANRKVN 165
K ++D+ AAV ILQ YL+ A RK N
Sbjct: 119 RKKVIDQMAAVLILQNYLE-ATRKDN 143
>gi|182418929|ref|ZP_02950186.1| conserved hypothetical protein [Clostridium butyricum 5521]
gi|237669098|ref|ZP_04529082.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
E BL5262]
gi|182377212|gb|EDT74780.1| conserved hypothetical protein [Clostridium butyricum 5521]
gi|237657446|gb|EEP55002.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
E BL5262]
Length = 140
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 73/145 (50%), Gaps = 10/145 (6%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD+G K +G++ISDP A L+ + R D+ ED + + E+ +E ++G
Sbjct: 3 RILGLDLGQKTIGVAISDPLGFTAQGLTTIRRGSKEKDI--EDLKKICDEYKVETIVIGL 60
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTSKGVELLLNPLDLHPVE 139
P N + ++ + L LE+ ++ +W+E T+ + DL +
Sbjct: 61 PKNMNGTIGPSGEIAMAFGKL-----LEEEFQIEIKFWDERLTTVAAHKAMLEADLSRNK 115
Query: 140 YKTILDKFAAVGILQEYLDNANRKV 164
K I+DK A+ ILQ YLD +R++
Sbjct: 116 RKKIVDKVASTYILQGYLDMISRQL 140
>gi|407783938|ref|ZP_11131128.1| Holliday junction resolvase YqgF [Oceanibaculum indicum P24]
gi|407198940|gb|EKE68965.1| Holliday junction resolvase YqgF [Oceanibaculum indicum P24]
Length = 166
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 7/143 (4%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV 80
R R LGLDVG +GL+ISD IA+PL + R K D+ E R ++ E + ++
Sbjct: 28 RQRLLGLDVGSTTIGLAISDFSQAIATPLETIARTKLMKDI--EALRKIVKEREVGALVI 85
Query: 81 GYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
G P + Q + F ++ + Y +W+E ++ V L+ D+
Sbjct: 86 GLPVSMDGTEGTRCQSTRQFARNIEPL----GLPYGFWDERLSTAAVTRLMIDADMTRKR 141
Query: 140 YKTILDKFAAVGILQEYLDNANR 162
++DK AA ILQ LD A +
Sbjct: 142 RGELVDKMAAAYILQGALDAARQ 164
>gi|424914287|ref|ZP_18337651.1| RNAse H-fold protein YqgF [Rhizobium leguminosarum bv. trifolii
WSM597]
gi|392850463|gb|EJB02984.1| RNAse H-fold protein YqgF [Rhizobium leguminosarum bv. trifolii
WSM597]
Length = 163
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 6/147 (4%)
Query: 14 LKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEF 73
+ ++ R GLD+G K +GLS+SD + A+P V+ R K TID A+ +
Sbjct: 9 MAETLAPRQAIAGLDLGTKTIGLSMSDLGRRFATPRQVIRRVKFTID--AQALMDFATAE 66
Query: 74 NLEGFIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNP 132
+ GF++G P N +A VQ + F+ ++ L + YW+E ++ E L
Sbjct: 67 KVAGFVIGLPMNMDGSAGPRVQATRAFVRNMEQKTAL---PFVYWDERLSTVAAERTLLE 123
Query: 133 LDLHPVEYKTILDKFAAVGILQEYLDN 159
+D+ + +D AA ILQ LD
Sbjct: 124 MDVSRAKRAERIDSAAASFILQGALDR 150
>gi|389875186|ref|YP_006374541.1| putative endonuclease involved in recombination [Tistrella mobilis
KA081020-065]
gi|388532366|gb|AFK57559.1| putative endonuclease involved in recombination [Tistrella mobilis
KA081020-065]
Length = 202
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 79/157 (50%), Gaps = 5/157 (3%)
Query: 9 LFEQMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRS 68
L L R + +GR +GLDVG K VG+++SD ++A+P+ ++ R K +D A +
Sbjct: 32 LTPWQLARMLPAKGRIMGLDVGTKTVGIAVSDELRRVATPIELIRRTKFRVD--AARMAA 89
Query: 69 LISEFNLEGFIVGYPFNRQQNAADAVQ-VKLFIDDLSA--TKKLEDMKYAYWNEGFTSKG 125
++ E + ++G P N Q ++ F ++L+ T D+ +W+E +++
Sbjct: 90 IVRERGVVAVVLGLPVNMDGTEGPRCQSIRQFRENLAQFLTADGIDLPMMFWDERWSTAA 149
Query: 126 VELLLNPLDLHPVEYKTILDKFAAVGILQEYLDNANR 162
V+ + D+ ++DK AA IL LD NR
Sbjct: 150 VQRYMIDADMSRKRRAELVDKAAAGYILDGALDAMNR 186
>gi|297616549|ref|YP_003701708.1| Holliday junction resolvase YqgF [Syntrophothermus lipocalidus DSM
12680]
gi|297144386|gb|ADI01143.1| Holliday junction resolvase YqgF [Syntrophothermus lipocalidus DSM
12680]
Length = 144
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 74/151 (49%), Gaps = 17/151 (11%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD G+K +G++ISD A PL+ + R D+ E R + + +E ++G
Sbjct: 2 RILGLDPGEKRIGVAISDALGITAQPLTSIQRSSLKADI--EAIRQICETYQVEHIVLGL 59
Query: 83 PFN----RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
P N R + AA + ++ + K+ ++ W+E ++K V+ +L D
Sbjct: 60 PLNLNGSRGEKAAQSAKLAQEL------KEHLSLEVTLWDERLSTKAVQGVLLEADTSRR 113
Query: 139 EYKTILDKFAAVGILQEYLD-----NANRKV 164
+ K ++DK AA ILQ YLD NR V
Sbjct: 114 KRKRVVDKLAAAYILQGYLDRIGGSGTNRSV 144
>gi|422327110|ref|ZP_16408137.1| RNAse H-fold protein YqgF [Erysipelotrichaceae bacterium 6_1_45]
gi|371663804|gb|EHO28988.1| RNAse H-fold protein YqgF [Erysipelotrichaceae bacterium 6_1_45]
Length = 137
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 72/141 (51%), Gaps = 7/141 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD+G K +G+S+SD IA P+ + + + + E + I EF ++ ++G
Sbjct: 2 RILGLDLGSKTLGVSVSDALGMIARPVETIRFESDDYEAACEQVQPYIKEFQVKTAVLGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLE--DMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
P + + ++ L + KLE ++ W+E T+ E +L D+ +
Sbjct: 62 PKHMNGDVGIRGEISLMFKE-----KLEALGLEVVLWDERLTTVAAEKILLSADVSRKKR 116
Query: 141 KTILDKFAAVGILQEYLDNAN 161
K I+D+ AAV ILQ YLD+ +
Sbjct: 117 KKIIDQMAAVQILQSYLDSKH 137
>gi|148380517|ref|YP_001255058.1| Holliday junction resolvase-like protein [Clostridium botulinum A
str. ATCC 3502]
gi|153933531|ref|YP_001384804.1| Holliday junction resolvase-like protein [Clostridium botulinum A
str. ATCC 19397]
gi|153935898|ref|YP_001388274.1| Holliday junction resolvase-like protein [Clostridium botulinum A
str. Hall]
gi|153940927|ref|YP_001391859.1| Holliday junction resolvase-like protein [Clostridium botulinum F
str. Langeland]
gi|168180549|ref|ZP_02615213.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum
NCTC 2916]
gi|168182640|ref|ZP_02617304.1| RNAse H-fold protein YqgF [Clostridium botulinum Bf]
gi|170757368|ref|YP_001782177.1| Holliday junction resolvase-like protein [Clostridium botulinum B1
str. Okra]
gi|170760496|ref|YP_001787880.1| Holliday junction resolvase-like protein [Clostridium botulinum A3
str. Loch Maree]
gi|226949917|ref|YP_002805008.1| Holliday junction resolvase-like protein [Clostridium botulinum A2
str. Kyoto]
gi|237796000|ref|YP_002863552.1| Holliday junction resolvase-like protein [Clostridium botulinum Ba4
str. 657]
gi|384462867|ref|YP_005675462.1| hypothetical protein CBF_2617 [Clostridium botulinum F str. 230613]
gi|167012712|sp|A7FWJ3.1|RUVX_CLOB1 RecName: Full=Putative Holliday junction resolvase
gi|167012713|sp|A5I4Z3.1|RUVX_CLOBH RecName: Full=Putative Holliday junction resolvase
gi|167012714|sp|A7GGE9.1|RUVX_CLOBL RecName: Full=Putative Holliday junction resolvase
gi|226725504|sp|B1IJG5.1|RUVX_CLOBK RecName: Full=Putative Holliday junction resolvase
gi|226725505|sp|B1KXB5.1|RUVX_CLOBM RecName: Full=Putative Holliday junction resolvase
gi|254767507|sp|C1FTB8.1|RUVX_CLOBJ RecName: Full=Putative Holliday junction resolvase
gi|259495699|sp|C3L148.1|RUVX_CLOB6 RecName: Full=Putative Holliday junction resolvase
gi|148290001|emb|CAL84120.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
3502]
gi|152929575|gb|ABS35075.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum A
str. ATCC 19397]
gi|152931812|gb|ABS37311.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum A
str. Hall]
gi|152936823|gb|ABS42321.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum F
str. Langeland]
gi|169122580|gb|ACA46416.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum B1
str. Okra]
gi|169407485|gb|ACA55896.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum A3
str. Loch Maree]
gi|182668482|gb|EDT80461.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum
NCTC 2916]
gi|182674156|gb|EDT86117.1| RNAse H-fold protein YqgF [Clostridium botulinum Bf]
gi|226841351|gb|ACO84017.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum A2
str. Kyoto]
gi|229261948|gb|ACQ52981.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum Ba4
str. 657]
gi|295319884|gb|ADG00262.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum F
str. 230613]
Length = 137
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 72/140 (51%), Gaps = 4/140 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD+GD+ +G++ISDP A ++ + RK DL E+ + + ++ ++ + G
Sbjct: 2 RILGLDIGDRTIGIAISDPLGFTAQGITTIRRKSEAYDL--EEIKKICDKYEVDTIVSGL 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N N Q + ++ K+ +++ W+E T+ + DL + K
Sbjct: 60 PKN--MNGTLGPQSEKVLEFCDLIKEHLNIEIKMWDERLTTVAATRAMLEADLSRSKRKK 117
Query: 143 ILDKFAAVGILQEYLDNANR 162
I+DK AA ILQ YLD+ ++
Sbjct: 118 IVDKVAATYILQGYLDSLSK 137
>gi|359772032|ref|ZP_09275470.1| putative Holliday junction resolvase [Gordonia effusa NBRC 100432]
gi|359310796|dbj|GAB18248.1| putative Holliday junction resolvase [Gordonia effusa NBRC 100432]
Length = 145
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 77/149 (51%), Gaps = 16/149 (10%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKK-----NTIDLMAEDFRSLISEFNL 75
RGR LG+DVG +G+++ DP +A+P+ + R + + +D +AE L+ E+
Sbjct: 5 RGRRLGIDVGTVRIGIAVCDPDGILATPVETVSRSRGKTRGSDLDRIAE----LVDEYEA 60
Query: 76 EGFIVGYPFN---RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNP 132
IVG P N + AADA V+ F ++ A ++ + Y++E T+ L
Sbjct: 61 VAVIVGLPRNLAGEESFAADA--VRAFGTEIEA--RISPVPLEYFDERMTTASASRALRS 116
Query: 133 LDLHPVEYKTILDKFAAVGILQEYLDNAN 161
+ ++++D+ AAV ILQ +LD A
Sbjct: 117 AGVSAKSARSVIDQAAAVAILQGWLDFAR 145
>gi|357975442|ref|ZP_09139413.1| Holliday junction resolvase YqgF [Sphingomonas sp. KC8]
Length = 152
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 7/142 (4%)
Query: 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 81
GR GLDVG K +G+++ D IASP ++ R+K T+DL R + ++ G +VG
Sbjct: 17 GRLAGLDVGTKTIGVAVCDAMWTIASPAELIERRKFTVDL--ARLRQFVDAQSVRGLVVG 74
Query: 82 YPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
P N + + Q V+ F+ +L + W+E +++ V L D
Sbjct: 75 LPLNMDGSDSPRTQSVRAFVRNLDPLG----LPILLWDERWSTAAVTRTLLEADASRARR 130
Query: 141 KTILDKFAAVGILQEYLDNANR 162
++DK AA ILQ +D R
Sbjct: 131 AELVDKMAAAYILQGAIDGLTR 152
>gi|226311491|ref|YP_002771385.1| Holliday junction resolvase [Brevibacillus brevis NBRC 100599]
gi|226094439|dbj|BAH42881.1| putative Holliday junction resolvase [Brevibacillus brevis NBRC
100599]
Length = 138
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 4/140 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVGDK +G+++SD A + + R+ D L+S++ + F+VG
Sbjct: 3 RLMGLDVGDKTIGVAVSDELGWTAQGVETIKRQSKEKDF--ARLSELVSQYQIGAFVVGL 60
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N ++ L ++ + W+E T+ E +L D+ + KT
Sbjct: 61 PKNMNGTIGPRAEMCQAFGKL--LEERTSLPVHMWDERLTTMAAERMLISADVSRQKRKT 118
Query: 143 ILDKFAAVGILQEYLDNANR 162
++DK AA ILQ YLD +R
Sbjct: 119 VIDKMAATLILQGYLDAKSR 138
>gi|209549118|ref|YP_002281035.1| Holliday junction resolvase-like protein [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|226731643|sp|B5ZMI7.1|RUVX_RHILW RecName: Full=Putative Holliday junction resolvase
gi|209534874|gb|ACI54809.1| Holliday junction resolvase YqgF [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 163
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 6/147 (4%)
Query: 14 LKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEF 73
+ ++ R GLD+G K +GLS+SD + A+P V+ R K TID A+ +
Sbjct: 9 MAETLAPRQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRVKFTID--AQALMDFATAE 66
Query: 74 NLEGFIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNP 132
+ GF++G P N +A VQ + F+ ++ L + YW+E ++ E L
Sbjct: 67 KVAGFVIGLPMNMDGSAGPRVQATRAFVRNMEQKTAL---PFVYWDERLSTVAAERTLLE 123
Query: 133 LDLHPVEYKTILDKFAAVGILQEYLDN 159
+D+ + +D AA ILQ LD
Sbjct: 124 MDVSRAKRAERIDSAAASFILQGALDR 150
>gi|254420883|ref|ZP_05034607.1| conserved hypothetical protein TIGR00250 [Brevundimonas sp. BAL3]
gi|196187060|gb|EDX82036.1| conserved hypothetical protein TIGR00250 [Brevundimonas sp. BAL3]
Length = 159
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 74/137 (54%), Gaps = 7/137 (5%)
Query: 24 FLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYP 83
++GLD+G+K +G+++SD IASPL ++ + K T++ A+ L++ + ++G P
Sbjct: 19 WMGLDLGEKTIGVAVSDATRLIASPLELIRKSKFTLE--ADQLFKLMAHRKVSALVIGLP 76
Query: 84 FNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
N Q + F +L ++L + A+W+E ++ VE L+ LDL+
Sbjct: 77 ANMDGTEGPRAQSCRAFARNL---ERLRPVNIAFWDERLSTSAVERFLIEDLDLNRKRRA 133
Query: 142 TILDKFAAVGILQEYLD 158
++D+ AA ILQ LD
Sbjct: 134 QVVDRTAAAWILQGALD 150
>gi|347548885|ref|YP_004855213.1| hypothetical protein LIV_1458 [Listeria ivanovii subsp. ivanovii
PAM 55]
gi|422419104|ref|ZP_16496059.1| putative Holliday junction resolvase [Listeria seeligeri FSL
N1-067]
gi|422422227|ref|ZP_16499180.1| putative Holliday junction resolvase [Listeria seeligeri FSL
S4-171]
gi|313633177|gb|EFS00059.1| putative Holliday junction resolvase [Listeria seeligeri FSL
N1-067]
gi|313637761|gb|EFS03116.1| putative Holliday junction resolvase [Listeria seeligeri FSL
S4-171]
gi|346981956|emb|CBW85941.1| Putative unknown protein [Listeria ivanovii subsp. ivanovii PAM 55]
Length = 138
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 66/140 (47%), Gaps = 4/140 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A + + + + + L+ E+ +E +VG
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGWTAQGVETIQIDEKRKQFGYDRVKELVLEYEVEKVVVGL 61
Query: 83 PFNRQQN-AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N A K++ + L A L W+E T+ E L D+ + K
Sbjct: 62 PKNMNNTIGPRAESSKIYAEVLEARIGL---PVVLWDERLTTTAAERTLIEADVSRKKRK 118
Query: 142 TILDKFAAVGILQEYLDNAN 161
++DK AAV ILQ YLD N
Sbjct: 119 EVIDKLAAVMILQSYLDTTN 138
>gi|323702199|ref|ZP_08113866.1| Holliday junction resolvase YqgF [Desulfotomaculum nigrificans DSM
574]
gi|323532886|gb|EGB22758.1| Holliday junction resolvase YqgF [Desulfotomaculum nigrificans DSM
574]
Length = 140
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 5/139 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVGDK +G+++SDP A L V +R+ + +D ++ E+ +E +VG
Sbjct: 2 RVMGLDVGDKTIGVALSDPLGWTAQALEV-IRRGDNLDKDLNRLAEIVQEYQVEQILVGL 60
Query: 83 PFNRQQN-AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N +V FI+ L K+ ++ W+E ++ E L D+ + K
Sbjct: 61 PKNMNGTLGPQGEKVLAFIERL---KERINLPVKTWDERLSTVAAERALLEADVSRSKRK 117
Query: 142 TILDKFAAVGILQEYLDNA 160
++DK AA ILQ YLD+
Sbjct: 118 KVIDKMAAAVILQGYLDSG 136
>gi|329113628|ref|ZP_08242406.1| Putative Holliday junction resolvase [Acetobacter pomorum DM001]
gi|326697035|gb|EGE48698.1| Putative Holliday junction resolvase [Acetobacter pomorum DM001]
Length = 154
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 68/144 (47%), Gaps = 5/144 (3%)
Query: 20 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFI 79
+ R LG+D G K VGL++SD +ASP + K+ + MA R L +E + G +
Sbjct: 15 RHARLLGIDPGKKQVGLALSDVSRMVASPFQTV--KRGKLGQMASFIRDLATEHEIGGMV 72
Query: 80 VGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGV-ELLLNPLDLHPV 138
VG P + + A Q D A + + W+E +S V +L++ DL
Sbjct: 73 VGIPLSLDGSFGPAAQASR--DWALALSEQTGLPVCQWDERLSSSAVNRMLIDEADLSRA 130
Query: 139 EYKTILDKFAAVGILQEYLDNANR 162
++D+ AA ILQ LD+ R
Sbjct: 131 RRAEMVDRLAAAYILQAALDSLPR 154
>gi|424870319|ref|ZP_18293981.1| RNAse H-fold protein YqgF [Rhizobium leguminosarum bv. viciae
WSM1455]
gi|393166020|gb|EJC66067.1| RNAse H-fold protein YqgF [Rhizobium leguminosarum bv. viciae
WSM1455]
Length = 164
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 6/147 (4%)
Query: 14 LKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEF 73
+ ++ R GLD+G K +GLS+SD + A+P +V+ R K TID A+
Sbjct: 9 MAETLAPRQAIAGLDLGTKTIGLSMSDLGRRFATPRTVIRRVKFTID--AQALLDFAQSE 66
Query: 74 NLEGFIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNP 132
+ GF++G P N +A VQ + F+ ++ L + YW+E ++ E L
Sbjct: 67 KVAGFVIGLPMNMDGSAGPRVQATRAFVRNMEQKTAL---PFVYWDERLSTVAAERTLLE 123
Query: 133 LDLHPVEYKTILDKFAAVGILQEYLDN 159
+D+ + +D AA ILQ LD
Sbjct: 124 MDVSRAKRAERIDSAAASFILQGALDR 150
>gi|222529202|ref|YP_002573084.1| Holliday junction resolvase YqgF [Caldicellulosiruptor bescii DSM
6725]
gi|254767493|sp|B9MRK7.1|RUVX_ANATD RecName: Full=Putative Holliday junction resolvase
gi|222456049|gb|ACM60311.1| Holliday junction resolvase YqgF [Caldicellulosiruptor bescii DSM
6725]
Length = 138
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 80/141 (56%), Gaps = 8/141 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASP-LSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 81
R L LD+G+ VG++ISDP A P +++ LR K+ + E+ + +N+E ++G
Sbjct: 2 RILCLDIGNSRVGVAISDPLKITAQPVMTIELRNKD----LFEELDKIFQGYNIEKVVIG 57
Query: 82 YPFNRQQNAADAVQVKLFIDDLSA-TKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
YP ++ ++K ID++S +++ W+E F++K VE +++ +L+
Sbjct: 58 YPLSKLHPDQKDEKLKK-IDEISEKIGSRYNVEIVKWDERFSTKAVERVIDE-ELNWKRK 115
Query: 141 KTILDKFAAVGILQEYLDNAN 161
K I+DK AAV ILQ YLD N
Sbjct: 116 KKIIDKVAAVYILQGYLDFYN 136
>gi|393767870|ref|ZP_10356414.1| Holliday junction resolvase YqgF [Methylobacterium sp. GXF4]
gi|392726681|gb|EIZ84002.1| Holliday junction resolvase YqgF [Methylobacterium sp. GXF4]
Length = 164
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 78/152 (51%), Gaps = 8/152 (5%)
Query: 10 FEQMLKRKVSKRG--RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFR 67
F+++ + RG R +G+D+G K +GL++SD +IA+PL + R K T D A+
Sbjct: 3 FDEIRTFAAASRGGARLIGVDLGTKTIGLALSDLGRQIATPLETIRRVKFTPD--AQRLA 60
Query: 68 SLISEFNLEGFIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGV 126
+L + + G ++G P N + VQ + F+ +L K + D+ + +++E ++ V
Sbjct: 61 ALCRQHAVGGLVIGLPLNMDGSEGPRVQSTRAFVRNL---KPIIDIPHVFFDERLSTAVV 117
Query: 127 ELLLNPLDLHPVEYKTILDKFAAVGILQEYLD 158
L D ++DK AA ILQ LD
Sbjct: 118 TRALIEADASRARRGQLVDKLAAAYILQGCLD 149
>gi|290968330|ref|ZP_06559871.1| RNAse YqgF [Megasphaera genomosp. type_1 str. 28L]
gi|290781605|gb|EFD94192.1| RNAse YqgF [Megasphaera genomosp. type_1 str. 28L]
Length = 143
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 72/141 (51%), Gaps = 9/141 (6%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV 80
R R LGLD+G K +G++ SD A ++ + RK D + ++L +E + +V
Sbjct: 2 RMRILGLDIGSKTIGVACSDALGITAQGITTIQRKTAQDDW--QRLQALATERRVTRMVV 59
Query: 81 GYPFNRQQNAADAV---QVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHP 137
G P R N D+ Q++ FI L +++ M++ YW+E T+ +L +
Sbjct: 60 GRP--RHMNGEDSENVKQIEAFITYLK--RQMPAMEFVYWDERLTTMMARQVLMAGGVRR 115
Query: 138 VEYKTILDKFAAVGILQEYLD 158
+ K +DK AA+ ILQ YLD
Sbjct: 116 EKRKQFVDKMAAILILQNYLD 136
>gi|398828277|ref|ZP_10586478.1| RNAse H-fold protein YqgF [Phyllobacterium sp. YR531]
gi|398218312|gb|EJN04822.1| RNAse H-fold protein YqgF [Phyllobacterium sp. YR531]
Length = 166
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 75/148 (50%), Gaps = 6/148 (4%)
Query: 12 QMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLIS 71
+ L+ V+ GLD+G K +G++ISD A+P VL R K T D A+D +++
Sbjct: 7 EQLEEHVADGKTIAGLDLGTKTIGIAISDRGFSFANPRPVLRRAKFTHD--AQDLLKMLA 64
Query: 72 EFNLEGFIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLL 130
N+ ++G P N + VQ + F+ ++ +KL D+ + YW+E ++ E L
Sbjct: 65 ADNVGAIVIGLPVNMDGSEGPRVQATRAFVRNM---EKLTDLPFVYWDERLSTVAAERAL 121
Query: 131 NPLDLHPVEYKTILDKFAAVGILQEYLD 158
+D+ + +D AA ILQ LD
Sbjct: 122 IGMDVSRQKRAERIDSAAAAFILQGALD 149
>gi|241204443|ref|YP_002975539.1| Holliday junction resolvase-like protein [Rhizobium leguminosarum
bv. trifolii WSM1325]
gi|240858333|gb|ACS56000.1| Holliday junction resolvase YqgF [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 164
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 74/150 (49%), Gaps = 7/150 (4%)
Query: 10 FEQMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSL 69
E+M + V ++ GLD+G K +GLS+SD + A+P +V+ R K TID A+
Sbjct: 6 IEEMAETLVPRQA-IAGLDLGTKTIGLSMSDLGRRFATPRTVIRRVKFTID--AQALLDF 62
Query: 70 ISEFNLEGFIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVEL 128
+ GF++G P N +A VQ + F+ ++ L + YW+E ++ E
Sbjct: 63 AQSEKVAGFVIGLPMNMDGSAGPRVQATRAFVRNMEQKTAL---PFVYWDERLSTVAAER 119
Query: 129 LLNPLDLHPVEYKTILDKFAAVGILQEYLD 158
L +D+ + +D AA ILQ LD
Sbjct: 120 TLLEMDVSRAKRAERIDSAAASFILQGALD 149
>gi|190891542|ref|YP_001978084.1| Holliday junction resolvase-like protein [Rhizobium etli CIAT 652]
gi|226731642|sp|B3PXX0.1|RUVX_RHIE6 RecName: Full=Putative Holliday junction resolvase
gi|190696821|gb|ACE90906.1| holliday junction resolvase protein [Rhizobium etli CIAT 652]
Length = 164
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+G K +GLS+SD + A+P V+ R K TID A+ ++ + GF++G P N
Sbjct: 21 GLDLGTKTIGLSMSDLGRRFATPRPVIRRAKFTID--AQALLDFAAKERVAGFVIGLPMN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
+A VQ + F+ ++ L + YW+E ++ E L +D+ + +
Sbjct: 79 MDGSAGPRVQATRAFVRNMEEKTAL---PFVYWDERLSTVAAERTLLEMDVSRAKRAERI 135
Query: 145 DKFAAVGILQEYLDN 159
D AA ILQ LD
Sbjct: 136 DSAAASFILQGALDR 150
>gi|291522741|emb|CBK81034.1| conserved hypothetical protein TIGR00250 [Coprococcus catus GD/7]
Length = 155
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRK-KNTIDLMAEDFRSLISEFNLEGFIVG 81
R +GLD G K VG+++SDP A L + RK +N + +LI E+ E ++G
Sbjct: 4 RIIGLDYGSKTVGVAVSDPLGFTAQGLETITRKDENKLRKTYARIEALIREYEAEQIVLG 63
Query: 82 YPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
YP N + V+ L + A ++ ++ W+E ++ E +L ++ + K
Sbjct: 64 YPKNMNDTEGERVEKTLAFKE--ALERRTGLEVILWDERMSTVASERVLMEGNVRREDRK 121
Query: 142 TILDKFAAVGILQEYLD 158
T +DK AA ILQ YLD
Sbjct: 122 TYIDKMAAAFILQGYLD 138
>gi|417100972|ref|ZP_11960312.1| holliday junction resolvase protein [Rhizobium etli CNPAF512]
gi|327192100|gb|EGE59078.1| holliday junction resolvase protein [Rhizobium etli CNPAF512]
Length = 164
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+G K +GLS+SD + A+P V+ R K TID A+ ++ + GF++G P N
Sbjct: 21 GLDLGTKTIGLSMSDLGRRFATPRPVIRRAKFTID--AQALLDFAAKEKVAGFVIGLPMN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
+A VQ + F+ ++ L + YW+E ++ E L +D+ + +
Sbjct: 79 MDGSAGPRVQATRAFVRNMEQKTAL---PFVYWDERLSTVAAERTLLEMDVSRAKRAERI 135
Query: 145 DKFAAVGILQEYLDN 159
D AA ILQ LD
Sbjct: 136 DSAAASFILQGALDR 150
>gi|424894822|ref|ZP_18318396.1| RNAse H-fold protein YqgF [Rhizobium leguminosarum bv. trifolii
WSM2297]
gi|393179049|gb|EJC79088.1| RNAse H-fold protein YqgF [Rhizobium leguminosarum bv. trifolii
WSM2297]
Length = 163
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 76/148 (51%), Gaps = 8/148 (5%)
Query: 14 LKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMA-EDFRSLISE 72
+ ++ R GLD+G K +GLS+SD + A+P V+ R K TID A DF I+E
Sbjct: 9 MAETLAPRQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRVKFTIDAQALMDF--AIAE 66
Query: 73 FNLEGFIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLN 131
+ GF++G P N +A VQ + F+ ++ ++ + + YW+E ++ E L
Sbjct: 67 -KVAGFVIGLPMNMDGSAGPRVQATRAFVRNM---EQKTGLPFVYWDERLSTVAAERTLL 122
Query: 132 PLDLHPVEYKTILDKFAAVGILQEYLDN 159
+D+ + +D AA ILQ LD
Sbjct: 123 EMDVSRAKRAERIDSAAASFILQGALDR 150
>gi|342217863|ref|ZP_08710501.1| RNAse H domain protein, YqgF family [Megasphaera sp. UPII 135-E]
gi|341592850|gb|EGS35710.1| RNAse H domain protein, YqgF family [Megasphaera sp. UPII 135-E]
Length = 137
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 70/139 (50%), Gaps = 9/139 (6%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLD+G K +G++ SD A + + RK D +A +++ +E + +VG
Sbjct: 2 RIIGLDIGSKTIGVACSDALQITAQGVYTIKRKNEKEDWLA--IQAVATERQVTRIVVGR 59
Query: 83 PFNRQQNAADAVQVK---LFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
P R N D VK +F+ L KK+ M++ YW+E T+ E +L + +
Sbjct: 60 P--RHMNGTDGDNVKAIEVFVRYLQ--KKMPQMEFVYWDERLTTIMAEQVLMEGGVRREK 115
Query: 140 YKTILDKFAAVGILQEYLD 158
K LD AAV ILQ YLD
Sbjct: 116 RKQFLDTMAAVLILQNYLD 134
>gi|424881351|ref|ZP_18304983.1| RNAse H-fold protein YqgF [Rhizobium leguminosarum bv. trifolii
WU95]
gi|392517714|gb|EIW42446.1| RNAse H-fold protein YqgF [Rhizobium leguminosarum bv. trifolii
WU95]
Length = 164
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 74/151 (49%), Gaps = 7/151 (4%)
Query: 10 FEQMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSL 69
E+M + V ++ GLD+G K +GLS+SD + A+P +V+ R K TID A+
Sbjct: 6 IEEMAETLVPRQA-IAGLDLGTKTIGLSMSDLGRRFATPRTVIRRVKFTID--AQALLDF 62
Query: 70 ISEFNLEGFIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVEL 128
+ GF++G P N +A VQ + F+ ++ L + YW+E ++ E
Sbjct: 63 AQSEKVAGFVIGLPMNMDGSAGPRVQATRAFVRNMEQKTAL---PFVYWDERLSTVAAER 119
Query: 129 LLNPLDLHPVEYKTILDKFAAVGILQEYLDN 159
L +D+ + +D AA ILQ LD
Sbjct: 120 TLLEMDVSRAKRAERIDSAAASFILQGALDR 150
>gi|150390226|ref|YP_001320275.1| Holliday junction resolvase YqgF [Alkaliphilus metalliredigens
QYMF]
gi|149950088|gb|ABR48616.1| Holliday junction resolvase YqgF [Alkaliphilus metalliredigens
QYMF]
Length = 138
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 72/141 (51%), Gaps = 6/141 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVGD+ +G++ISD A + + R DL + LI+++ ++ +VG
Sbjct: 3 RIIGLDVGDRTIGIAISDLMGWTAQGVETIQRISIKKDL--QRLEELIAQYEVKKILVGL 60
Query: 83 PFNRQQNAA-DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N +V LF++ L KLE W+E ++ E L D+ + K
Sbjct: 61 PKNMNGTIGPQGEKVLLFVERLEKRFKLE---VVTWDERLSTVAAEKFLIGADVSRKKRK 117
Query: 142 TILDKFAAVGILQEYLDNANR 162
++DK AAV ILQ YLD+ ++
Sbjct: 118 QVIDKLAAVHILQGYLDSISK 138
>gi|217964351|ref|YP_002350029.1| Holliday junction resolvase-like protein [Listeria monocytogenes
HCC23]
gi|284801892|ref|YP_003413757.1| hypothetical protein LM5578_1647 [Listeria monocytogenes 08-5578]
gi|284995034|ref|YP_003416802.1| hypothetical protein LM5923_1599 [Listeria monocytogenes 08-5923]
gi|386008273|ref|YP_005926551.1| holliday junction resolvase, putative [Listeria monocytogenes L99]
gi|404283994|ref|YP_006684891.1| holliday junction resolvase [Listeria monocytogenes SLCC2372]
gi|404407940|ref|YP_006690655.1| holliday junction resolvase [Listeria monocytogenes SLCC2376]
gi|404410803|ref|YP_006696391.1| holliday junction resolvase [Listeria monocytogenes SLCC5850]
gi|404413581|ref|YP_006699168.1| holliday junction resolvase [Listeria monocytogenes SLCC7179]
gi|405758550|ref|YP_006687826.1| holliday junction resolvase [Listeria monocytogenes SLCC2479]
gi|422809582|ref|ZP_16857993.1| Putative Holliday junction resolvase [Listeria monocytogenes FSL
J1-208]
gi|217333621|gb|ACK39415.1| conserved hypothetical protein [Listeria monocytogenes HCC23]
gi|284057454|gb|ADB68395.1| hypothetical protein LM5578_1647 [Listeria monocytogenes 08-5578]
gi|284060501|gb|ADB71440.1| hypothetical protein LM5923_1599 [Listeria monocytogenes 08-5923]
gi|307571083|emb|CAR84262.1| holliday junction resolvase, putative [Listeria monocytogenes L99]
gi|378753196|gb|EHY63781.1| Putative Holliday junction resolvase [Listeria monocytogenes FSL
J1-208]
gi|404230629|emb|CBY52033.1| putative holliday junction resolvase [Listeria monocytogenes
SLCC5850]
gi|404233496|emb|CBY54899.1| putative holliday junction resolvase [Listeria monocytogenes
SLCC2372]
gi|404236432|emb|CBY57834.1| putative holliday junction resolvase [Listeria monocytogenes
SLCC2479]
gi|404239280|emb|CBY60681.1| putative holliday junction resolvase [Listeria monocytogenes
SLCC7179]
gi|404242089|emb|CBY63489.1| putative holliday junction resolvase [Listeria monocytogenes
SLCC2376]
gi|441471195|emb|CCQ20950.1| Putative Holliday junction resolvase [Listeria monocytogenes]
gi|441474324|emb|CCQ24078.1| Putative Holliday junction resolvase [Listeria monocytogenes N53-1]
Length = 135
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 66/138 (47%), Gaps = 4/138 (2%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLDVG K VG++ISDP A + + +N + + L+ E+ +E +VG P
Sbjct: 1 MGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGLPK 60
Query: 85 NRQQN-AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143
N A K++ + L A L W+E T+ E L D+ + K +
Sbjct: 61 NMNNTIGPRAESSKIYAEVLEARIGL---PVVLWDERLTTSAAERTLIEADVSRKKRKEV 117
Query: 144 LDKFAAVGILQEYLDNAN 161
+DK AAV ILQ YLD N
Sbjct: 118 IDKLAAVMILQSYLDTTN 135
>gi|268318983|ref|YP_003292639.1| putative Holliday junction resolvase [Lactobacillus johnsonii
FI9785]
gi|262397358|emb|CAX66372.1| putative Holliday junction resolvase [Lactobacillus johnsonii
FI9785]
Length = 143
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 79/146 (54%), Gaps = 7/146 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K VG++ISDP A L + ++ R ++ ++++EGF++G
Sbjct: 2 RLLGLDVGSKTVGVAISDPLGITAQELETIKIDESKFSFGMRQIRKIVRKYDVEGFVLGL 61
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTS-KGVELLLNPLDLHP-VE 139
P N ++ +V+ K + L K+ D+ Y +E T+ + +L+ +H VE
Sbjct: 62 PKNMDGSSGHSVERSKQYGGRL---KEKFDLPVYYVDERLTTVQADRILVEEAGVHDRVE 118
Query: 140 YKTILDKFAAVGILQEYLDNANRKVN 165
K ++D+ AAV ILQ YL+ A RK N
Sbjct: 119 RKKVIDQMAAVLILQNYLE-ATRKDN 143
>gi|262198569|ref|YP_003269778.1| Holliday junction resolvase YqgF [Haliangium ochraceum DSM 14365]
gi|262081916|gb|ACY17885.1| Holliday junction resolvase YqgF [Haliangium ochraceum DSM 14365]
Length = 139
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 4/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K +G++ SD A P+ + R+ D+ +L+SE +VG
Sbjct: 3 RALGLDVGMKTIGVAGSDELGLAAHPVETIARRGTGPDVA--RVCALVSEREATDVVVGL 60
Query: 83 PFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P Q A +V++ ID L A +++ W+E F++ VE +L D+ + K
Sbjct: 61 PLELSGQEGRRARRVRVLIDALRAALP-DEVAVHTWDERFSTAAVERVLIEADMSRRKRK 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ +LD
Sbjct: 120 QVIDKQAAAYILQGWLD 136
>gi|403724433|ref|ZP_10946040.1| putative Holliday junction resolvase [Gordonia rhizosphera NBRC
16068]
gi|403205592|dbj|GAB90371.1| putative Holliday junction resolvase [Gordonia rhizosphera NBRC
16068]
Length = 143
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 72/143 (50%), Gaps = 10/143 (6%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNT---IDLMAEDFRSLISEFNLEG 77
RGR LG+DVG +G+++ DP +A+P+ + R + ID +AE L++E+ G
Sbjct: 5 RGRRLGVDVGSVRIGVAVCDPDGILATPVETVRRTPDGAGDIDRIAE----LVAEYEAVG 60
Query: 78 FIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH 136
+VG P R + A A + F D L+ ++ + Y +E T+ L +
Sbjct: 61 VVVGLPKTLRNEAGAAAQTAREFGDRLA--DRIAPVGVEYHDERLTTVTATQALRASGVK 118
Query: 137 PVEYKTILDKFAAVGILQEYLDN 159
+ ++D+ AAV ILQ +LD
Sbjct: 119 AKSSRGVIDQAAAVAILQGWLDT 141
>gi|418051283|ref|ZP_12689368.1| Holliday junction resolvase [Mycobacterium rhodesiae JS60]
gi|353184940|gb|EHB50464.1| Holliday junction resolvase [Mycobacterium rhodesiae JS60]
Length = 167
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 71/139 (51%), Gaps = 3/139 (2%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV 80
RGR LG+DVG +G+++SDP +A+P+ + R++ L +L+SE ++ IV
Sbjct: 19 RGRRLGIDVGSVRIGVAVSDPDGILATPVETVRRERTGKHL--RRLTALVSELDIVEVIV 76
Query: 81 GYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
G P A + Q + + D A ++ + +E T+ + L +
Sbjct: 77 GLPRTLADRAGTSAQDAVDVADALA-GRIAPVPVRLADERLTTVVAQRSLREAGVRATAA 135
Query: 141 KTILDKFAAVGILQEYLDN 159
++++D+ AAVGILQ +LD
Sbjct: 136 RSVIDQAAAVGILQGWLDQ 154
>gi|1353874|gb|AAB01816.1| unknown [Rhodobacter capsulatus]
Length = 159
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 6/139 (4%)
Query: 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 81
G GLD+G K +G+++SD IA+PL + R+K T+D+ D ++E + GF++G
Sbjct: 17 GALAGLDLGTKTIGVAVSDTLRGIATPLRTIRREKFTLDV--ADLMKTVAERQIAGFVLG 74
Query: 82 YPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
P N + Q + F +L +KL + +W+E ++ E + DL
Sbjct: 75 LPVNMDGSEGPRAQSTRAFARNL---EKLTPLPITFWDERLSTVAAERAMLEADLSRKRR 131
Query: 141 KTILDKFAAVGILQEYLDN 159
++D AA ILQ LD
Sbjct: 132 AELVDHVAAGFILQGALDR 150
>gi|417002084|ref|ZP_11941473.1| RNAse H domain protein, YqgF family [Anaerococcus prevotii
ACS-065-V-Col13]
gi|325479225|gb|EGC82321.1| RNAse H domain protein, YqgF family [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 139
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 73/138 (52%), Gaps = 6/138 (4%)
Query: 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 81
R +GLDVGDK +G+++SDP +A + RKK ++D+ + +I E ++ +VG
Sbjct: 2 SRIMGLDVGDKTIGVALSDPMFLLAQAKETIKRKKASLDI--QRLLEIIDENDVNLIVVG 59
Query: 82 YPFNRQQNAA-DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
P N +++V F+D L KK D++ Y +E T+ E +L + +
Sbjct: 60 LPKNMNNTIGPQSMKVMSFVDLL---KKQTDVEIVYEDERMTTIQSESVLIDMKVRRENR 116
Query: 141 KTILDKFAAVGILQEYLD 158
K +DK AA ILQ YLD
Sbjct: 117 KQYIDKIAATFILQTYLD 134
>gi|325290060|ref|YP_004266241.1| Holliday junction resolvase [Syntrophobotulus glycolicus DSM 8271]
gi|324965461|gb|ADY56240.1| Holliday junction resolvase [Syntrophobotulus glycolicus DSM 8271]
Length = 134
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 73/140 (52%), Gaps = 8/140 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLD+G+K +G+++SD A PL V+ R + E+ +I E+ ++ +VGY
Sbjct: 2 RVMGLDLGEKTIGVAVSDLLMLTAQPLLVIKRSEKE----QEELAGIIKEYEVDTIVVGY 57
Query: 83 PFNRQQNAAD-AVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + A+ + F +L A +L W+E ++ + L D+ + K
Sbjct: 58 PKNMNGTIGERALATEAFAQELQAAFRL---PIKLWDERLSTVAAQKSLIQADVSRAKRK 114
Query: 142 TILDKFAAVGILQEYLDNAN 161
++DK AAV ILQ +LD+ +
Sbjct: 115 KVIDKMAAVFILQGFLDSKH 134
>gi|187778852|ref|ZP_02995325.1| hypothetical protein CLOSPO_02447 [Clostridium sporogenes ATCC
15579]
gi|187772477|gb|EDU36279.1| RNAse H domain protein, YqgF family [Clostridium sporogenes ATCC
15579]
Length = 137
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 72/140 (51%), Gaps = 4/140 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD+GD+ +G+++SDP A ++ + RK DL E+ + + ++ ++ + G
Sbjct: 2 RILGLDIGDRTIGVALSDPLGFTAQGITTIRRKSEAYDL--EEIKKICDKYEVDTIVSGL 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N N Q + ++ K+ +++ W+E T+ + DL + K
Sbjct: 60 PKN--MNGTLGPQSEKVLEFCDLIKEHVNIEIKMWDERLTTVAATRAMLEADLSRSKRKK 117
Query: 143 ILDKFAAVGILQEYLDNANR 162
I+DK AA ILQ YLD+ ++
Sbjct: 118 IVDKMAATYILQGYLDSLSK 137
>gi|390448105|ref|ZP_10233728.1| Holliday junction resolvase YqgF [Nitratireductor aquibiodomus
RA22]
gi|389666744|gb|EIM78188.1| Holliday junction resolvase YqgF [Nitratireductor aquibiodomus
RA22]
Length = 159
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 73/137 (53%), Gaps = 12/137 (8%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEF---NLEGFIVGY 82
GLD+G + +GLS+SD +A+P V++RKK T +D +L++ F N+ G ++G
Sbjct: 19 GLDLGTRTIGLSVSDRGLSLATPRQVIMRKKFT-----QDAEALLAAFKRDNVGGIVIGL 73
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + Q + FI +L ++L ++ A+W+E ++ E L +D+ +
Sbjct: 74 PVNMDGSEGPRAQSTRAFIRNL---ERLTELPVAFWDERMSTVAAERALLEMDVSRRKRA 130
Query: 142 TILDKFAAVGILQEYLD 158
+D AA ILQ LD
Sbjct: 131 ERIDSAAAAFILQGALD 147
>gi|302874707|ref|YP_003843340.1| Holliday junction resolvase YqgF [Clostridium cellulovorans 743B]
gi|307690680|ref|ZP_07633126.1| Holliday junction resolvase-like protein [Clostridium cellulovorans
743B]
gi|302577564|gb|ADL51576.1| Holliday junction resolvase YqgF [Clostridium cellulovorans 743B]
Length = 135
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 70/138 (50%), Gaps = 6/138 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG+K +G+++SDP A ++ + RK D+ E + +E+ ++ +VG
Sbjct: 2 RVLGLDVGNKTIGVAVSDPLGFTAQGITTINRKNIKTDI--ETVVNYCNEYTVDTIVVGL 59
Query: 83 PFNRQQN-AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + +V F++ L KK D+ W+E T+ + DL +
Sbjct: 60 PKNMNGTLGPQSEKVMAFVEKL---KKNTDINIKMWDERLTTVAAHKAMLEADLSRAKRN 116
Query: 142 TILDKFAAVGILQEYLDN 159
I+DK AA ILQ YLD+
Sbjct: 117 KIVDKVAATYILQGYLDS 134
>gi|16800605|ref|NP_470873.1| Holliday junction resolvase-like protein [Listeria innocua
Clip11262]
gi|422412990|ref|ZP_16489949.1| putative Holliday junction resolvase [Listeria innocua FSL S4-378]
gi|422416003|ref|ZP_16492960.1| putative Holliday junction resolvase [Listeria innocua FSL J1-023]
gi|423100584|ref|ZP_17088291.1| RNAse H domain protein, YqgF family [Listeria innocua ATCC 33091]
gi|32130053|sp|Q92BL1.1|RUVX_LISIN RecName: Full=Putative Holliday junction resolvase
gi|16414010|emb|CAC96768.1| lin1537 [Listeria innocua Clip11262]
gi|313618843|gb|EFR90723.1| putative Holliday junction resolvase [Listeria innocua FSL S4-378]
gi|313623694|gb|EFR93845.1| putative Holliday junction resolvase [Listeria innocua FSL J1-023]
gi|370792808|gb|EHN60651.1| RNAse H domain protein, YqgF family [Listeria innocua ATCC 33091]
Length = 138
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 67/140 (47%), Gaps = 4/140 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A + + ++ + + L+ E+ +E +VG
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGWTAQGVETIQIDESRKQFGYDRVKELVLEYEVEKVVVGL 61
Query: 83 PFNRQQN-AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N A K++ + L + L W+E T+ E L D+ + K
Sbjct: 62 PKNMNNTIGPRAESSKIYAEVLESRIGL---PVVLWDERLTTSAAERTLIEADVSRKKRK 118
Query: 142 TILDKFAAVGILQEYLDNAN 161
++DK AAV ILQ YLD N
Sbjct: 119 EVIDKLAAVMILQSYLDTTN 138
>gi|406706316|ref|YP_006756669.1| RNAse H domain-containing protein [alpha proteobacterium HIMB5]
gi|406652092|gb|AFS47492.1| RNAse H domain protein, YqgF family [alpha proteobacterium HIMB5]
Length = 151
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 80/149 (53%), Gaps = 9/149 (6%)
Query: 15 KRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFN 74
K+ K+ R +GLD+G K +G++I D IA+P + +K T + + +D +I E N
Sbjct: 8 KKNNPKKCRLIGLDLGSKRIGVAICDENWSIATPFKTI--QKTTKENLIKDLNEIILENN 65
Query: 75 LEGFIVGYPFNRQQNAADAVQVKLFIDDLSAT-KKLEDMKYAYWNEGFTSKGVELLLNPL 133
+EG ++G P N + + Q + D+S+ +L + W+E ++ G L + L
Sbjct: 66 IEGIVIGNPINMDGSLGRSAQ---SVQDVSSNISELVKIPVCLWDERLSTVGAFNLSSQL 122
Query: 134 DLHPVEYKTILDKFAAVGILQ---EYLDN 159
D++ + + +D+ AA ILQ +YL+N
Sbjct: 123 DINVSKREKNIDQNAAAFILQGAIDYLNN 151
>gi|253580719|ref|ZP_04857983.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251848090|gb|EES76056.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 140
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 3/138 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKK-NTIDLMAEDFRSLISEFNLEGFIVG 81
R LGLD G K VG++ISDP A + + RK+ N + L+SE+++E ++G
Sbjct: 2 RVLGLDYGSKTVGVAISDPLGITAQGVETIWRKQENHLRQTLARIEELVSEYHVEKIVLG 61
Query: 82 YPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
YP N + Q L ++ ++ ++ W+E T+ L + K
Sbjct: 62 YPKNMNNTIGERAQKSLEFKEM--LERRTGLEVIMWDERLTTVEANRTLMEASVRRENRK 119
Query: 142 TILDKFAAVGILQEYLDN 159
LD+ AAV ILQ YLD+
Sbjct: 120 QYLDQLAAVFILQGYLDS 137
>gi|153812697|ref|ZP_01965365.1| hypothetical protein RUMOBE_03104 [Ruminococcus obeum ATCC 29174]
gi|149831213|gb|EDM86302.1| RNAse H domain protein, YqgF family [Ruminococcus obeum ATCC 29174]
Length = 140
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 65/138 (47%), Gaps = 3/138 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKK-NTIDLMAEDFRSLISEFNLEGFIVG 81
R LGLD G K VG+++SDP A L + RK+ N + L+ E+ +E ++G
Sbjct: 2 RILGLDYGSKTVGVAVSDPLGVTAQRLETIWRKQENKLRRTLAQVEELVKEYEIEKIVLG 61
Query: 82 YPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
YP N + + L ++ KK ++ W+E T+ + L + K
Sbjct: 62 YPKNMNNTVGERAEKALEFGEM--LKKRTGLEVIMWDERLTTVSADRALMEAGVRRENRK 119
Query: 142 TILDKFAAVGILQEYLDN 159
LD AAV ILQ YLD+
Sbjct: 120 EYLDGIAAVFILQGYLDS 137
>gi|335039185|ref|ZP_08532365.1| Holliday junction resolvase [Caldalkalibacillus thermarum TA2.A1]
gi|334180919|gb|EGL83504.1| Holliday junction resolvase [Caldalkalibacillus thermarum TA2.A1]
Length = 139
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 68/141 (48%), Gaps = 6/141 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K +G+S+SD A + V+ R DL LI+E+ + IVG
Sbjct: 2 RIMGLDVGQKTIGVSVSDELGWTAQGIEVIKRTDLQRDLAR--LEELIAEYQVGQIIVGL 59
Query: 83 PFNRQQNAAD-AVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + + + F L ++ + W+E ++K E +L D+ + K
Sbjct: 60 PKNMDGTIGETGTRCQAFAQVL---REKTGLPVEMWDERLSTKSAERILLSADMSRKKRK 116
Query: 142 TILDKFAAVGILQEYLDNANR 162
++DK AAV +LQ YLD R
Sbjct: 117 QVIDKMAAVIMLQSYLDAKTR 137
>gi|294677840|ref|YP_003578455.1| holliday junction resolvase YqgF [Rhodobacter capsulatus SB 1003]
gi|338817937|sp|Q52673.2|RUVX_RHOCB RecName: Full=Putative Holliday junction resolvase
gi|294476660|gb|ADE86048.1| holliday junction resolvase YqgF [Rhodobacter capsulatus SB 1003]
Length = 159
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 6/139 (4%)
Query: 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 81
G GLD+G K +G+++SD IA+PL + R+K ++DL D ++E + GF++G
Sbjct: 17 GALAGLDLGTKTIGVAVSDTLRGIATPLRTIRREKFSLDL--ADLMKTVAERQIAGFVLG 74
Query: 82 YPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
P N + Q + F +L +KL + +W+E ++ E + DL
Sbjct: 75 LPVNMDGSEGPRAQSTRAFARNL---EKLTPLPITFWDERLSTVAAERAMLEADLSRKRR 131
Query: 141 KTILDKFAAVGILQEYLDN 159
++D AA ILQ LD
Sbjct: 132 AELVDHVAAGFILQGALDR 150
>gi|407973270|ref|ZP_11154182.1| Holliday junction resolvase YqgF [Nitratireductor indicus C115]
gi|407431111|gb|EKF43783.1| Holliday junction resolvase YqgF [Nitratireductor indicus C115]
Length = 158
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 6/135 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+G K +GL++SD ++A+P V++RKK T D AE + + + G ++G P N
Sbjct: 21 GLDLGTKTIGLAVSDRGLRLATPRPVVMRKKFTQD--AEALLAAFARDTVGGIVIGLPVN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
+ Q + FI + ++L D+ A+W+E ++ E +L +D+ + +
Sbjct: 79 MDGSEGPRAQSTRAFIRNF---ERLSDLPVAFWDERMSTVAAERVLIEMDVSRKKRAERI 135
Query: 145 DKFAAVGILQEYLDN 159
D AA ILQ LD
Sbjct: 136 DSAAAAFILQGALDR 150
>gi|289423537|ref|ZP_06425338.1| conserved hypothetical protein [Peptostreptococcus anaerobius
653-L]
gi|289156039|gb|EFD04703.1| conserved hypothetical protein [Peptostreptococcus anaerobius
653-L]
Length = 140
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 69/138 (50%), Gaps = 6/138 (4%)
Query: 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 81
GR +GLD+G+ +G+++SD A ++ + R+ D+ E + +I E N+ + G
Sbjct: 4 GRIMGLDIGNNTIGVAVSDLMGMTAQGITTIKRESKKKDI--EAIKDIIKEQNVNLIVSG 61
Query: 82 YPFNRQQNAA-DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
P N A +V F + + KLE +W+E T+ E +L D+
Sbjct: 62 LPKNMNGTVGPQAEKVMKFCELIKEETKLE---VEFWDERLTTVSAEKMLISGDVSRKNR 118
Query: 141 KTILDKFAAVGILQEYLD 158
K ++DK AAV ILQ YLD
Sbjct: 119 KKVIDKLAAVLILQNYLD 136
>gi|402487495|ref|ZP_10834313.1| Holliday junction resolvase-like protein [Rhizobium sp. CCGE 510]
gi|401813364|gb|EJT05708.1| Holliday junction resolvase-like protein [Rhizobium sp. CCGE 510]
Length = 162
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 71/147 (48%), Gaps = 6/147 (4%)
Query: 14 LKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEF 73
L + ++ R GLD+G K +GLS+SD + A+P V+ R K TID A+
Sbjct: 9 LAKTLAPRQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRIKFTID--AQALLDFAQSE 66
Query: 74 NLEGFIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNP 132
+ GF++G P N +A VQ + F+ ++ L + YW+E ++ E L
Sbjct: 67 KVCGFVIGLPMNMDGSAGPRVQATRAFVRNMEQKTAL---PFLYWDERLSTVAAERTLLE 123
Query: 133 LDLHPVEYKTILDKFAAVGILQEYLDN 159
+D+ + +D AA ILQ LD
Sbjct: 124 MDVSRAKRAERIDSAAASFILQGALDR 150
>gi|399050732|ref|ZP_10740776.1| RNAse H-fold protein YqgF [Brevibacillus sp. CF112]
gi|398051448|gb|EJL43770.1| RNAse H-fold protein YqgF [Brevibacillus sp. CF112]
Length = 138
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 4/140 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVGDK +G+++SD A + + R+ DL + L++ + + F+VG
Sbjct: 3 RLMGLDVGDKTIGIAVSDELGWTAQGVETIKRQSKEKDL--ARIQELVAHYQVGAFVVGL 60
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N ++ L ++ + W+E T+ E +L D+ + KT
Sbjct: 61 PKNMNGTIGPRAEMCQAFGKL--LEERTSLPVHMWDERLTTMAAERMLISADVSRQKRKT 118
Query: 143 ILDKFAAVGILQEYLDNANR 162
++DK AA ILQ +LD +R
Sbjct: 119 VIDKMAATLILQGFLDAKSR 138
>gi|163849371|ref|YP_001637415.1| Holliday junction resolvase YqgF [Chloroflexus aurantiacus J-10-fl]
gi|222527368|ref|YP_002571839.1| Holliday junction resolvase YqgF [Chloroflexus sp. Y-400-fl]
gi|189046090|sp|A9WCR4.1|RUVX_CHLAA RecName: Full=Putative Holliday junction resolvase
gi|254767506|sp|B9LH40.1|RUVX_CHLSY RecName: Full=Putative Holliday junction resolvase
gi|163670660|gb|ABY37026.1| Holliday junction resolvase YqgF [Chloroflexus aurantiacus J-10-fl]
gi|222451247|gb|ACM55513.1| Holliday junction resolvase YqgF [Chloroflexus sp. Y-400-fl]
Length = 153
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 71/148 (47%), Gaps = 10/148 (6%)
Query: 24 FLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYP 83
L LDVG++ +G++ISD +IA+PL+ + + + L+ E + +VG P
Sbjct: 6 ILALDVGERRIGVAISDADARIAAPLTTI--NAHPPERAIAQIVRLVQERGVSRVVVGLP 63
Query: 84 FN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
R + A V+ F D LS+ ++E TS E +L L L P + K
Sbjct: 64 LTMRGERGPQAEVVQRFADTLSSALSC---PVEMFDERLTSVAAEQMLRNLGLKPAKIKA 120
Query: 143 ILDKFAAVGILQEYLD----NANRKVNL 166
+D+ AA ILQ+YLD N NR L
Sbjct: 121 QIDQVAASIILQDYLDARRSNPNRSHEL 148
>gi|71083767|ref|YP_266487.1| Holliday junction resolvase [Candidatus Pelagibacter ubique
HTCC1062]
gi|91763197|ref|ZP_01265161.1| Putative Holliday junction resolvase [Candidatus Pelagibacter
ubique HTCC1002]
gi|146325587|sp|Q4FLQ5.1|RUVX_PELUB RecName: Full=Putative Holliday junction resolvase
gi|71062880|gb|AAZ21883.1| Putative Holliday junction resolvase [Candidatus Pelagibacter
ubique HTCC1062]
gi|91717610|gb|EAS84261.1| Putative Holliday junction resolvase [Candidatus Pelagibacter
ubique HTCC1002]
Length = 151
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 79/145 (54%), Gaps = 6/145 (4%)
Query: 15 KRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFN 74
K K + + RF+GLD+G K +G+SI D + IA+P + K NT +L+ E + +I + N
Sbjct: 8 KIKHTNKVRFIGLDLGSKRIGVSICDERQSIATPFKT-INKTNTNELIDE-LKIIIKDNN 65
Query: 75 LEGFIVGYPFNRQQNAADAVQVKLFIDDLSAT-KKLEDMKYAYWNEGFTSKGVELLLNPL 133
+ G IVG P N + + Q ++D+++ K D+ W+E ++ G L + L
Sbjct: 66 IGGIIVGNPVNMDGSLGRSAQ---SVNDVASNISKSIDLPVILWDERLSTVGAFNLSSLL 122
Query: 134 DLHPVEYKTILDKFAAVGILQEYLD 158
D++ + +D+ AA ILQ +D
Sbjct: 123 DVNVSKRVKTIDQNAAAFILQGAID 147
>gi|18310760|ref|NP_562694.1| Holliday junction resolvase-like protein [Clostridium perfringens
str. 13]
gi|110799090|ref|YP_696464.1| Holliday junction resolvase-like protein [Clostridium perfringens
ATCC 13124]
gi|110803306|ref|YP_699063.1| Holliday junction resolvase-like protein [Clostridium perfringens
SM101]
gi|168207854|ref|ZP_02633859.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens E
str. JGS1987]
gi|168211403|ref|ZP_02637028.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens B
str. ATCC 3626]
gi|168214255|ref|ZP_02639880.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens
CPE str. F4969]
gi|168218243|ref|ZP_02643868.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens
NCTC 8239]
gi|182625715|ref|ZP_02953484.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens D
str. JGS1721]
gi|422346447|ref|ZP_16427361.1| RNAse H-fold protein YqgF [Clostridium perfringens WAL-14572]
gi|422874698|ref|ZP_16921183.1| Holliday junction resolvase-like protein [Clostridium perfringens
F262]
gi|32130045|sp|Q8XJH8.1|RUVX_CLOPE RecName: Full=Putative Holliday junction resolvase
gi|118597205|sp|Q0TPH6.1|RUVX_CLOP1 RecName: Full=Putative Holliday junction resolvase
gi|118597206|sp|Q0SS44.1|RUVX_CLOPS RecName: Full=Putative Holliday junction resolvase
gi|18145441|dbj|BAB81484.1| conserved hypothetical protein [Clostridium perfringens str. 13]
gi|110673737|gb|ABG82724.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens
ATCC 13124]
gi|110683807|gb|ABG87177.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens
SM101]
gi|170660825|gb|EDT13508.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens E
str. JGS1987]
gi|170710607|gb|EDT22789.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens B
str. ATCC 3626]
gi|170714263|gb|EDT26445.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens
CPE str. F4969]
gi|177909117|gb|EDT71592.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens D
str. JGS1721]
gi|182379748|gb|EDT77227.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens
NCTC 8239]
gi|373225992|gb|EHP48319.1| RNAse H-fold protein YqgF [Clostridium perfringens WAL-14572]
gi|380304339|gb|EIA16628.1| Holliday junction resolvase-like protein [Clostridium perfringens
F262]
Length = 137
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 67/140 (47%), Gaps = 4/140 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD+G K +G+++SDP A ++ + R T D+ E + E+ +E + G
Sbjct: 2 RILGLDIGSKTIGVAVSDPLGWTAQGVTTIKRDCYTKDV--EAVMKICKEYGVETIVAGM 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N N ++ + +K D K +W+E T+ + DL + K
Sbjct: 60 PKN--MNGTIGPSGEMVKNLCEQIEKSFDGKIEFWDERLTTVAAHRAMLEADLSRAKRKK 117
Query: 143 ILDKFAAVGILQEYLDNANR 162
I+DK AA ILQ YLD ++
Sbjct: 118 IVDKIAATYILQGYLDRISK 137
>gi|258543587|ref|YP_003189020.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
3283-01]
gi|384043505|ref|YP_005482249.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
3283-12]
gi|384052022|ref|YP_005479085.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
3283-03]
gi|384055131|ref|YP_005488225.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
3283-07]
gi|384058364|ref|YP_005491031.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
3283-22]
gi|384061005|ref|YP_005500133.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
3283-26]
gi|384064297|ref|YP_005484939.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
3283-32]
gi|384120310|ref|YP_005502934.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
3283-01-42C]
gi|421850738|ref|ZP_16283686.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus NBRC
101655]
gi|256634665|dbj|BAI00641.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
3283-01]
gi|256637721|dbj|BAI03690.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
3283-03]
gi|256640775|dbj|BAI06737.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
3283-07]
gi|256643830|dbj|BAI09785.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
3283-22]
gi|256646885|dbj|BAI12833.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
3283-26]
gi|256649938|dbj|BAI15879.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
3283-32]
gi|256652928|dbj|BAI18862.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256655982|dbj|BAI21909.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
3283-12]
gi|371458439|dbj|GAB28889.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus NBRC
101655]
Length = 154
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 67/144 (46%), Gaps = 5/144 (3%)
Query: 20 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFI 79
+ R LG+D G K VGL++SD +ASP + K+ + MA R L E + G +
Sbjct: 15 RHARLLGIDPGKKQVGLALSDVSRMVASPFQTV--KRGKLGQMASFIRDLAKEHEIGGMV 72
Query: 80 VGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGV-ELLLNPLDLHPV 138
VG P + + A Q D A + + W+E +S V +L++ DL
Sbjct: 73 VGIPLSLDGSFGPAAQASR--DWALALSEQTGLPVCQWDERLSSSAVNRMLIDEADLSRA 130
Query: 139 EYKTILDKFAAVGILQEYLDNANR 162
++D+ AA ILQ LD+ R
Sbjct: 131 RRAEMVDRLAAAYILQAALDSLPR 154
>gi|405376865|ref|ZP_11030816.1| RNAse H-fold protein YqgF [Rhizobium sp. CF142]
gi|397326596|gb|EJJ30910.1| RNAse H-fold protein YqgF [Rhizobium sp. CF142]
Length = 163
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 6/134 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+G K +GL++SD + A+P VL R+K TID AE + ++ + F++G P N
Sbjct: 21 GLDLGTKTIGLAMSDLGRRFATPRPVLKREKFTID--AETLLNFATKEKVAAFVIGLPMN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
+A VQ + F+ ++ ++ + + YW+E ++ E L +D+ + +
Sbjct: 79 MNGSAGPRVQATRAFVRNM---EQKTAIPFVYWDERLSTVAAERALLEMDVSRAKRAERI 135
Query: 145 DKFAAVGILQEYLD 158
D AA ILQ LD
Sbjct: 136 DSAAASFILQGALD 149
>gi|85858514|ref|YP_460716.1| 4-amino-4-deoxychorismate lyase [Syntrophus aciditrophicus SB]
gi|146325615|sp|Q2LR42.1|RUVX_SYNAS RecName: Full=Putative Holliday junction resolvase
gi|85721605|gb|ABC76548.1| 4-amino-4-deoxychorismate lyase [Syntrophus aciditrophicus SB]
Length = 150
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 77/143 (53%), Gaps = 8/143 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRK--KNTIDLMAEDFRSLISEFNLEGFIV 80
R LGLD G+K +G+++ D A L+ ++RK +N + ++A SL+ +++E ++
Sbjct: 2 RILGLDYGEKRIGVALCDELGLTAQALTTVIRKSWRNDVGIIA----SLVRTYDVEKIVI 57
Query: 81 GYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
GYP + + + +Q + + + + W+E T+K E +L+ + P +
Sbjct: 58 GYPL--RLDGTEGIQCEKVVRFARRLEAALGIPVIRWDETLTTKEAEEILSRSGVPPRKR 115
Query: 141 KTILDKFAAVGILQEYLDNANRK 163
+ ++D+ AA ILQ YLD +++
Sbjct: 116 RGVVDRLAASLILQSYLDAISQE 138
>gi|218661529|ref|ZP_03517459.1| holliday junction resolvase protein [Rhizobium etli IE4771]
Length = 166
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 6/135 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+G K +GLS+SD + A+P V+ R K TID A+ + + GF++G P N
Sbjct: 23 GLDLGTKTIGLSMSDLGRRFATPRPVIRRVKFTID--AQALLDFAATEKVAGFVIGLPMN 80
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
+A VQ + F+ ++ L + YW+E ++ E L +D+ + +
Sbjct: 81 MDGSAGPRVQATRAFVRNMEQKTAL---PFVYWDERLSTVAAERTLLEMDVSRAKRAERI 137
Query: 145 DKFAAVGILQEYLDN 159
D AA ILQ LD
Sbjct: 138 DSAAASFILQGALDR 152
>gi|313897358|ref|ZP_07830901.1| RNAse H domain protein, YqgF family [Clostridium sp. HGF2]
gi|373123949|ref|ZP_09537791.1| RNAse H-fold protein YqgF [Erysipelotrichaceae bacterium 21_3]
gi|312957728|gb|EFR39353.1| RNAse H domain protein, YqgF family [Clostridium sp. HGF2]
gi|371659781|gb|EHO25041.1| RNAse H-fold protein YqgF [Erysipelotrichaceae bacterium 21_3]
Length = 137
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 72/141 (51%), Gaps = 7/141 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD+G K +G+S+SD IA P+ + + + + + + I EF ++ ++G
Sbjct: 2 RILGLDLGSKTLGVSVSDALGMIARPVETIRFESDDYEAACKQVQPYIKEFQVKTAVLGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLE--DMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
P + + ++ L + KLE ++ W+E T+ E +L D+ +
Sbjct: 62 PKHMNGDVGIRGEISLMFKE-----KLEALGLEVVLWDERLTTVAAEKILISADVSRKKR 116
Query: 141 KTILDKFAAVGILQEYLDNAN 161
K I+D+ AAV ILQ YLD+ +
Sbjct: 117 KKIIDQMAAVQILQSYLDSKH 137
>gi|374575989|ref|ZP_09649085.1| RNAse H-fold protein YqgF [Bradyrhizobium sp. WSM471]
gi|386402406|ref|ZP_10087184.1| RNAse H-fold protein YqgF [Bradyrhizobium sp. WSM1253]
gi|374424310|gb|EHR03843.1| RNAse H-fold protein YqgF [Bradyrhizobium sp. WSM471]
gi|385743032|gb|EIG63228.1| RNAse H-fold protein YqgF [Bradyrhizobium sp. WSM1253]
Length = 163
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 77/150 (51%), Gaps = 9/150 (6%)
Query: 20 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFI 79
+RG +GLD+G K +G+++S+P ++A+ + + RK D A ++ SE GF+
Sbjct: 17 ERGGLVGLDLGTKTIGVAVSNPDRRLATGVETIQRKAFKQD--AARLLAIASERKAVGFV 74
Query: 80 VGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
+G P N + Q + F +L+ L + W+E ++ VE L +D+
Sbjct: 75 LGLPINMDGSEGPRAQSTRAFARNLAG---LTALPIGLWDERLSTAAVERELIGMDVSRA 131
Query: 139 EYKTILDKFAAVGILQEYLDNANRKVNLKA 168
+ ++D+ AA+ ILQ LD R NL+A
Sbjct: 132 KRAEVIDEHAAIFILQGALD---RLANLRA 158
>gi|310816166|ref|YP_003964130.1| Holliday junction resolvase [Ketogulonicigenium vulgare Y25]
gi|385233669|ref|YP_005795011.1| Holliday junction resolvase YqgF [Ketogulonicigenium vulgare
WSH-001]
gi|308754901|gb|ADO42830.1| Putative Holliday junction resolvase [Ketogulonicigenium vulgare
Y25]
gi|343462580|gb|AEM41015.1| Holliday junction resolvase YqgF [Ketogulonicigenium vulgare
WSH-001]
Length = 156
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 6/135 (4%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
GLD+G +G+++SD +ASPL + RKK ++D AE +I+ N+ G ++G P
Sbjct: 20 CGLDLGTVTIGVAVSDLMLSVASPLETIKRKKFSLD--AEALLKIIAARNIAGIVLGLPL 77
Query: 85 NRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143
N + Q + F +LS +L D+ YW+E ++ E L D +
Sbjct: 78 NMDGSEGPRAQSTRAFARNLS---RLTDLPIVYWDERLSTVAAERALLEADTSRKRRDEV 134
Query: 144 LDKFAAVGILQEYLD 158
+D AA ILQ LD
Sbjct: 135 IDHVAAGFILQGVLD 149
>gi|421853782|ref|ZP_16286440.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus subsp.
pasteurianus LMG 1262 = NBRC 106471]
gi|371477956|dbj|GAB31643.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus subsp.
pasteurianus LMG 1262 = NBRC 106471]
Length = 154
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 67/144 (46%), Gaps = 5/144 (3%)
Query: 20 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFI 79
+ R LG+D G K VGL++SD +ASP + K+ + MA R L E + G +
Sbjct: 15 RHARLLGIDPGKKQVGLALSDVSRMVASPFQTV--KRGKLGQMANFIRDLAKEHEIGGMV 72
Query: 80 VGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGV-ELLLNPLDLHPV 138
VG P + + A Q D A + + W+E +S V +L++ DL
Sbjct: 73 VGIPLSLDGSFGPAAQASR--DWALALSEQTGLPVCQWDERLSSSAVNRMLIDEADLSRA 130
Query: 139 EYKTILDKFAAVGILQEYLDNANR 162
++D+ AA ILQ LD+ R
Sbjct: 131 RRAEMVDRLAAAYILQAALDSLPR 154
>gi|383771377|ref|YP_005450442.1| putative Holliday junction resolvase [Bradyrhizobium sp. S23321]
gi|381359500|dbj|BAL76330.1| putative Holliday junction resolvase [Bradyrhizobium sp. S23321]
Length = 163
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 78/151 (51%), Gaps = 9/151 (5%)
Query: 20 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFI 79
+RG +GLD+G K +G+++S+P ++A+ + + RK D A ++ +E GF+
Sbjct: 17 ERGGLIGLDLGTKTIGVAVSNPDRRLATGVETIQRKAFKQD--AARLLAIAAERKAVGFV 74
Query: 80 VGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
+G P N + Q + F +L+ L + W+E ++ VE L +D+
Sbjct: 75 LGLPINMDGSEGPRAQSTRAFARNLAG---LTALPIGLWDERLSTAAVERELIGMDVSRA 131
Query: 139 EYKTILDKFAAVGILQEYLDNANRKVNLKAN 169
+ ++D+ AA+ ILQ LD R NL+A+
Sbjct: 132 KRAEVIDEHAAIFILQGALD---RLANLRAS 159
>gi|307243223|ref|ZP_07525394.1| RNAse H domain protein, YqgF family [Peptostreptococcus stomatis
DSM 17678]
gi|306493351|gb|EFM65333.1| RNAse H domain protein, YqgF family [Peptostreptococcus stomatis
DSM 17678]
Length = 138
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 8/140 (5%)
Query: 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLR--KKNTIDLMAEDFRSLISEFNLEGFI 79
GR +GLD+GD +G+++SD A ++ + R KKN I E + +I E + +
Sbjct: 4 GRIMGLDIGDNTIGVAVSDLMGMTAQGITTIKRSSKKNDI----EALKKIIEERQVNLIV 59
Query: 80 VGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
G P N N Q + I K+ M+ +W+E T+ E +L D+
Sbjct: 60 SGLPKN--MNGTIGPQAEKVIKFCDLIKEELGMEIKFWDERLTTVSAEKMLIEGDVRRKN 117
Query: 140 YKTILDKFAAVGILQEYLDN 159
K ++DK AAV ILQ YLD+
Sbjct: 118 RKKVIDKLAAVLILQGYLDS 137
>gi|295115537|emb|CBL36384.1| conserved hypothetical protein TIGR00250 [butyrate-producing
bacterium SM4/1]
Length = 140
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 5/139 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRK-KNTIDLMAEDFRSLISEFNLEGFIVG 81
R +G D G K G+++SDP A L ++RK +N + LI E+ +E ++G
Sbjct: 2 RIMGQDFGSKTTGVAVSDPLGLTAQGLETIVRKDENKLRQTCARIEELIEEYQIEAIVLG 61
Query: 82 YPFNRQQNAAD-AVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
YP N A + A + + F + L ++ W+E T+ E +L +
Sbjct: 62 YPKNMNNTAGERAEKTESFKEML---ERRTGKPVILWDERLTTIAAERMLMESGVRRENR 118
Query: 141 KTILDKFAAVGILQEYLDN 159
K ++DK AA ILQ YLD+
Sbjct: 119 KAVIDKVAAALILQGYLDS 137
>gi|338707457|ref|YP_004661658.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. pomaceae
ATCC 29192]
gi|336294261|gb|AEI37368.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. pomaceae
ATCC 29192]
Length = 174
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 15/161 (9%)
Query: 2 KYVKPLRLFEQMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDL 61
K + L+LF + L GR GLDVG K +GL++ D + IASP + RKK T+D
Sbjct: 22 KKQQELKLFREALPSG----GRLAGLDVGTKTIGLAVCDSQWIIASPSETIRRKKFTLDF 77
Query: 62 MAEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYA--YWN 118
E + I++ ++G ++G P + + Q V+ F ++ +E + W+
Sbjct: 78 --ELLKQFITKQQIKGLVIGLPLSLDGTDSPRTQSVRAF------SRNMEPLGLPVLMWD 129
Query: 119 EGFTSKGVELLLNPLDLHPVEYKTILDKFAAVGILQEYLDN 159
E +++K V L D ++DK AA ILQ +D+
Sbjct: 130 ERWSTKAVTRTLLEADASRARRSEVVDKMAAAYILQGAIDS 170
>gi|404281061|ref|YP_006681959.1| holliday junction resolvase [Listeria monocytogenes SLCC2755]
gi|404286924|ref|YP_006693510.1| holliday junction resolvase [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|405749846|ref|YP_006673312.1| holliday junction resolvase [Listeria monocytogenes ATCC 19117]
gi|405752722|ref|YP_006676187.1| holliday junction resolvase [Listeria monocytogenes SLCC2378]
gi|405755660|ref|YP_006679124.1| holliday junction resolvase [Listeria monocytogenes SLCC2540]
gi|406704275|ref|YP_006754629.1| holliday junction resolvase, putative [Listeria monocytogenes L312]
gi|417317617|ref|ZP_12104229.1| Holliday junction resolvase-like protein [Listeria monocytogenes
J1-220]
gi|424823264|ref|ZP_18248277.1| Putative Holliday junction resolvase [Listeria monocytogenes str.
Scott A]
gi|328474865|gb|EGF45665.1| Holliday junction resolvase-like protein [Listeria monocytogenes
J1-220]
gi|332311944|gb|EGJ25039.1| Putative Holliday junction resolvase [Listeria monocytogenes str.
Scott A]
gi|404219046|emb|CBY70410.1| holliday junction resolvase, putative [Listeria monocytogenes ATCC
19117]
gi|404221922|emb|CBY73285.1| putative holliday junction resolvase [Listeria monocytogenes
SLCC2378]
gi|404224860|emb|CBY76222.1| putative holliday junction resolvase [Listeria monocytogenes
SLCC2540]
gi|404227696|emb|CBY49101.1| putative holliday junction resolvase [Listeria monocytogenes
SLCC2755]
gi|404245853|emb|CBY04078.1| holliday junction resolvase, putative [Listeria monocytogenes
serotype 7 str. SLCC2482]
gi|406361305|emb|CBY67578.1| holliday junction resolvase, putative [Listeria monocytogenes L312]
Length = 135
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 66/138 (47%), Gaps = 4/138 (2%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLDVG K VG++ISDP A + + +N + + L+ E+ +E +VG P
Sbjct: 1 MGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGLPK 60
Query: 85 NRQQN-AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143
N A K++ + L + L W+E T+ E L D+ + K +
Sbjct: 61 NMNNTIGPRAESSKIYAEVLESRIGL---PVVLWDERLTTSAAERTLIEADVSRKKRKEV 117
Query: 144 LDKFAAVGILQEYLDNAN 161
+DK AAV ILQ YLD N
Sbjct: 118 IDKLAAVMILQSYLDTTN 135
>gi|254414995|ref|ZP_05028758.1| conserved hypothetical protein TIGR00250 [Coleofasciculus
chthonoplastes PCC 7420]
gi|196178142|gb|EDX73143.1| conserved hypothetical protein TIGR00250 [Coleofasciculus
chthonoplastes PCC 7420]
Length = 136
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 72/136 (52%), Gaps = 6/136 (4%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLDVG K +G++ D IA+ L+ + K+ + + FR L+ + +++ +VG P+
Sbjct: 1 MGLDVGSKRIGVAGCDGTGLIATGLTTI--KRTSFEQDVSQFRELVEQRDVQVLVVGLPY 58
Query: 85 NRQQNAA-DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143
+ A QV+ + LSA +L Y +E TS E LL+ L P +K +
Sbjct: 59 SMNGTLGFQARQVQKYARRLSAALQL---PVEYVDERLTSFEAEQLLHAEKLSPSRHKAL 115
Query: 144 LDKFAAVGILQEYLDN 159
+D+ AA ILQ++LD
Sbjct: 116 IDRKAAAIILQQWLDT 131
>gi|147677400|ref|YP_001211615.1| endonuclease [Pelotomaculum thermopropionicum SI]
gi|189046102|sp|A5D3C3.1|RUVX_PELTS RecName: Full=Putative Holliday junction resolvase
gi|146273497|dbj|BAF59246.1| predicted endonuclease [Pelotomaculum thermopropionicum SI]
Length = 154
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 68/141 (48%), Gaps = 5/141 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLD+GDK +G+++SDP A L V+ K + E L+ ++ + +VG
Sbjct: 2 RIMGLDLGDKKIGVALSDPMGWTAQGLDVIA-VKGPPEASVERISELVRQYGVGKIVVGL 60
Query: 83 PFNRQQN-AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + A + + F L+ L W+E T+ E LL DL +
Sbjct: 61 PRNMNGSFGPRAERARAFAGCLAGALNL---PVELWDERMTTLEAEKLLIEADLSRARRR 117
Query: 142 TILDKFAAVGILQEYLDNANR 162
++DK AAV ILQ +LD+ R
Sbjct: 118 QVIDKMAAVLILQSFLDSQGR 138
>gi|375142445|ref|YP_005003094.1| RNAse H-fold protein YqgF [Mycobacterium rhodesiae NBB3]
gi|359823066|gb|AEV75879.1| RNAse H-fold protein YqgF [Mycobacterium rhodesiae NBB3]
Length = 178
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 4/149 (2%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV 80
RGR LG+D G +G+++SDP +A+P+ + R+K + D +L+ E+ +V
Sbjct: 24 RGRRLGIDAGRVRIGVAVSDPDGILATPVETVDRRKGS-DKHVRRLAALVGEYEAVEAVV 82
Query: 81 GYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
G P + A Q + + D A ++ + +E T+ + L +
Sbjct: 83 GLPRTLADRSGSAAQDAIALADQLAA-RIAPVPVRLADERLTTVAAQRALREAGVRAKGQ 141
Query: 141 KTILDKFAAVGILQEYLDNANRKVNLKAN 169
++++D+ AAVGILQ +LD R+ L A+
Sbjct: 142 RSMIDQVAAVGILQNWLD--QRRAALAAH 168
>gi|302380637|ref|ZP_07269102.1| Holliday junction resolvase-like protein [Finegoldia magna
ACS-171-V-Col3]
gi|303233893|ref|ZP_07320542.1| RNAse H domain protein, YqgF family [Finegoldia magna BVS033A4]
gi|417926564|ref|ZP_12569961.1| RNAse H domain protein, YqgF family [Finegoldia magna
SY403409CC001050417]
gi|302311580|gb|EFK93596.1| Holliday junction resolvase-like protein [Finegoldia magna
ACS-171-V-Col3]
gi|302494818|gb|EFL54575.1| RNAse H domain protein, YqgF family [Finegoldia magna BVS033A4]
gi|341588932|gb|EGS32302.1| RNAse H domain protein, YqgF family [Finegoldia magna
SY403409CC001050417]
Length = 137
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 69/137 (50%), Gaps = 6/137 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R++GLDVGD+ +G++ISDP A L + RK D+ E +I E + IVG
Sbjct: 3 RYIGLDVGDRTIGVAISDPFLLTAQSLMTIKRKSKIEDI--EIINGIIKEKEVSKIIVGL 60
Query: 83 PFNRQQN-AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N A +VK F+ +L +K D+ Y +E T+ +L ++ + K
Sbjct: 61 PKNMNNTIGPQAKKVKTFVKEL---RKHTDLDIEYVDERLTTVSATRVLIEQNVSRKKRK 117
Query: 142 TILDKFAAVGILQEYLD 158
++D AA ILQ YLD
Sbjct: 118 DVIDSVAATYILQTYLD 134
>gi|398821526|ref|ZP_10579977.1| RNAse H-fold protein YqgF [Bradyrhizobium sp. YR681]
gi|398227802|gb|EJN13973.1| RNAse H-fold protein YqgF [Bradyrhizobium sp. YR681]
Length = 163
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 78/149 (52%), Gaps = 9/149 (6%)
Query: 20 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFI 79
+RG +GLD+G K +G+++S+P ++A+ + + RK+ D A ++ +E + GF+
Sbjct: 17 ERGGLIGLDLGTKTIGVAVSNPDRRLATGVETIQRKQFKQD--AARLLAIAAERKVVGFV 74
Query: 80 VGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
+G P N + Q + F +L+ L + W+E ++ VE L +D+
Sbjct: 75 LGLPINMDGSEGPRAQSTRAFARNLAG---LTTLPIGLWDERLSTAAVERELIGMDVSRA 131
Query: 139 EYKTILDKFAAVGILQEYLDNANRKVNLK 167
+ ++D+ AA+ ILQ LD R NL+
Sbjct: 132 KRAEVIDEHAAIFILQGALD---RLANLR 157
>gi|379735772|ref|YP_005329278.1| Holliday junction resolvase [Blastococcus saxobsidens DD2]
gi|378783579|emb|CCG03247.1| Holliday junction resolvase [Blastococcus saxobsidens DD2]
Length = 224
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 74/143 (51%), Gaps = 5/143 (3%)
Query: 18 VSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEG 77
S+RGR LG+DVG VG+++SD +ASPL L R K+ DL + +L++E +
Sbjct: 81 TSRRGRVLGIDVGTVRVGVALSDVTRTLASPLETLRRAKSRTDL--DQLVALVAEHEVTE 138
Query: 78 FIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH 136
+VG P + A + Q + +L+ ++ D+ +E ++ L +
Sbjct: 139 VVVGEPVHLSGAAGTSAQDAADYAQELA--DRIPDVPVNLIDERLSTVTAASQLREGGID 196
Query: 137 PVEYKTILDKFAAVGILQEYLDN 159
+ ++D+ AAV ILQ+YLD+
Sbjct: 197 SRRQRGVIDQAAAVVILQQYLDS 219
>gi|381166734|ref|ZP_09875948.1| putative Holliday junction resolvase [Phaeospirillum molischianum
DSM 120]
gi|380684307|emb|CCG40760.1| putative Holliday junction resolvase [Phaeospirillum molischianum
DSM 120]
Length = 159
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 72/149 (48%), Gaps = 4/149 (2%)
Query: 11 EQMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLI 70
Q L ++ + R LGLD+G K +GL++SD +A+P L R K T D A+ ++I
Sbjct: 6 SQDLLAQLGRDQRLLGLDLGTKTIGLALSDISRTVATPFDTLRRTKFTAD--ADALFAVI 63
Query: 71 SEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLL 130
++ G ++G P + + A+ + + S K D+ A+W+E ++ V L
Sbjct: 64 DRHDVGGLVLGLPV--EMDGAEGARCQSTRAFASNLLKRRDLPIAFWDERLSTAAVTRTL 121
Query: 131 NPLDLHPVEYKTILDKFAAVGILQEYLDN 159
D ++DK AA ILQ LD
Sbjct: 122 LEADSSRRRRAEVVDKMAAAYILQGLLDR 150
>gi|335050194|ref|ZP_08543168.1| RNAse H domain protein, YqgF family [Megasphaera sp. UPII 199-6]
gi|333757525|gb|EGL35085.1| RNAse H domain protein, YqgF family [Megasphaera sp. UPII 199-6]
Length = 143
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 72/141 (51%), Gaps = 9/141 (6%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV 80
R R LGLD+G K +G++ SD A ++ + RK D + ++L +E + +V
Sbjct: 2 RMRILGLDIGSKTIGVACSDALGITAQGITTIQRKTAKDDW--QRLQALATERWVTRMVV 59
Query: 81 GYPFNRQQNAADAV---QVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHP 137
G P R N D+ Q++ FI L +++ M++ YW+E T+ +L +
Sbjct: 60 GRP--RHMNGEDSENVKQIEAFITYLK--RQMPAMEFVYWDERLTTMMARQVLMAGGVRR 115
Query: 138 VEYKTILDKFAAVGILQEYLD 158
+ K +DK AA+ ILQ YLD
Sbjct: 116 EKRKQFVDKMAAILILQNYLD 136
>gi|377560486|ref|ZP_09789989.1| putative Holliday junction resolvase [Gordonia otitidis NBRC
100426]
gi|377522348|dbj|GAB35154.1| putative Holliday junction resolvase [Gordonia otitidis NBRC
100426]
Length = 142
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 72/140 (51%), Gaps = 5/140 (3%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV 80
RGR LG+DVG +G+++SDP + +A+P+ + ID +L+ E+ G IV
Sbjct: 5 RGRRLGVDVGSVRIGVAVSDPDSILATPVETV--PGRDIDGAVRRLCALVEEYEAVGVIV 62
Query: 81 GYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
G P + AV+ + F L+ KLE + Y +E T+ + L+ +
Sbjct: 63 GLPKTLRNTDGPAVEKARDFGTRLA--DKLEGIPVLYSDERLTTVAAQQALHASGRNTKT 120
Query: 140 YKTILDKFAAVGILQEYLDN 159
+ ++D+ AAV ILQ +LD+
Sbjct: 121 SRGVIDQAAAVAILQGWLDS 140
>gi|125972677|ref|YP_001036587.1| Holliday junction resolvase-like protein [Clostridium thermocellum
ATCC 27405]
gi|256004836|ref|ZP_05429810.1| Holliday junction resolvase YqgF [Clostridium thermocellum DSM
2360]
gi|281416864|ref|ZP_06247884.1| Holliday junction resolvase YqgF [Clostridium thermocellum JW20]
gi|385779407|ref|YP_005688572.1| Holliday junction resolvase YqgF [Clostridium thermocellum DSM
1313]
gi|419722571|ref|ZP_14249711.1| Holliday junction resolvase [Clostridium thermocellum AD2]
gi|419725549|ref|ZP_14252590.1| Holliday junction resolvase [Clostridium thermocellum YS]
gi|167012716|sp|A3DBR5.1|RUVX_CLOTH RecName: Full=Putative Holliday junction resolvase
gi|125712902|gb|ABN51394.1| Holliday junction resolvase YqgF [Clostridium thermocellum ATCC
27405]
gi|255991146|gb|EEU01254.1| Holliday junction resolvase YqgF [Clostridium thermocellum DSM
2360]
gi|281408266|gb|EFB38524.1| Holliday junction resolvase YqgF [Clostridium thermocellum JW20]
gi|316941087|gb|ADU75121.1| Holliday junction resolvase YqgF [Clostridium thermocellum DSM
1313]
gi|380771119|gb|EIC04998.1| Holliday junction resolvase [Clostridium thermocellum YS]
gi|380781338|gb|EIC10996.1| Holliday junction resolvase [Clostridium thermocellum AD2]
Length = 141
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 74/141 (52%), Gaps = 4/141 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LG+D GD +G++ISDP A L + + + +++ + L+ E+ ++ IVG+
Sbjct: 2 RVLGIDYGDSRIGIAISDPLGWTAQALETITWRSD-VEVPLKRISELVEEYGVKTVIVGF 60
Query: 83 PFNRQQN-AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N A + FID L ++++D++ W+E T+ + + + + K
Sbjct: 61 PKNMDGTVGARGEKTIEFIDLLQ--QRIKDIEVIKWDERLTTVAANRTMYEMGIKKSKKK 118
Query: 142 TILDKFAAVGILQEYLDNANR 162
++D+ AAV ILQ YLD+ +
Sbjct: 119 LVVDQIAAVYILQGYLDSKGK 139
>gi|260886204|ref|ZP_05897467.1| putative holliday junction resolvase [Selenomonas sputigena ATCC
35185]
gi|330838890|ref|YP_004413470.1| Holliday junction resolvase [Selenomonas sputigena ATCC 35185]
gi|260864067|gb|EEX78567.1| putative holliday junction resolvase [Selenomonas sputigena ATCC
35185]
gi|329746654|gb|AEC00011.1| Holliday junction resolvase [Selenomonas sputigena ATCC 35185]
Length = 149
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 69/146 (47%), Gaps = 5/146 (3%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV 80
R R L LDVGD+ +G++ SD A + + RK D + L+ + + FIV
Sbjct: 2 RKRVLALDVGDRTIGVAASDGLGLTAQGVETIRRKSWDKDFAR--LKELMELYETDTFIV 59
Query: 81 GYPFNRQQNAADAVQV-KLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
G P N + V + F L KK + + +W+E ++ E L D+ +
Sbjct: 60 GLPKNMNGTQGERCDVVRDFAQRLQ--KKFKGSQVVFWDERLSTVAAERSLIAADVSRAK 117
Query: 140 YKTILDKFAAVGILQEYLDNANRKVN 165
+ ++DK AAV ILQ YLDN +V
Sbjct: 118 RRKVIDKMAAVFILQGYLDNLGMRVG 143
>gi|312135027|ref|YP_004002365.1| holliday junction resolvase yqgf [Caldicellulosiruptor owensensis
OL]
gi|311775078|gb|ADQ04565.1| Holliday junction resolvase YqgF [Caldicellulosiruptor owensensis
OL]
Length = 138
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 81/141 (57%), Gaps = 8/141 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASP-LSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 81
R L LD+G+ VG++ISDP A P +++ L+ K+ D + + F+ +++E ++G
Sbjct: 2 RILCLDIGNSRVGVAISDPLKITAQPVMTIELKNKDLFDELDKIFQ----RYSIEKVVIG 57
Query: 82 YPFNRQQNAADAVQVKLFIDDLSA-TKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
YP ++ ++K ID++S +++ W+E F++K VE ++N +L+
Sbjct: 58 YPLSKLHPDLKDEKLKK-IDEISEKIGSRYNVEIVKWDERFSTKAVERVMNE-ELNWKRK 115
Query: 141 KTILDKFAAVGILQEYLDNAN 161
K ++DK AAV ILQ YLD N
Sbjct: 116 KKVIDKVAAVYILQGYLDFYN 136
>gi|363888830|ref|ZP_09316208.1| hypothetical protein HMPREF9628_00118 [Eubacteriaceae bacterium
CM5]
gi|361967451|gb|EHL20273.1| hypothetical protein HMPREF9628_00118 [Eubacteriaceae bacterium
CM5]
Length = 142
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 5/136 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
+ L LDVG K +G++I+D A P S + R KN ++ + ++I E +++ +VG
Sbjct: 3 KILALDVGKKKIGIAITDLLQITAQPHSTI-RSKN-LEEQIDKIIAIIDENSIKTVVVGL 60
Query: 83 PFNRQQNAAD-AVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + D A K F++ +SA K +D++ Y +E TSK L +++ ++ K
Sbjct: 61 PKNMNDSEGDQASWTKTFVERISAKK--QDIEIVYIDERLTSKMALSSLKHMNMKKIKEK 118
Query: 142 TILDKFAAVGILQEYL 157
++D AAV IL+ YL
Sbjct: 119 GLIDTVAAVNILETYL 134
>gi|291549894|emb|CBL26156.1| conserved hypothetical protein TIGR00250 [Ruminococcus torques
L2-14]
Length = 145
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 66/138 (47%), Gaps = 3/138 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRK-KNTIDLMAEDFRSLISEFNLEGFIVG 81
R +GLD G K VG++ISDP A + + RK +N + LI E+ +E ++G
Sbjct: 2 RVMGLDYGTKTVGVAISDPLGLTAQGIETIQRKEENKLRRTCARIEELIKEYQVEKIVLG 61
Query: 82 YPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
+P + + + Q L D+ + ++ W+E T+ E L + K
Sbjct: 62 FPKHMNNDIGERAQKSLEFRDMLVRRT--GLEVIMWDERLTTVAAEQTLIESGVRRENRK 119
Query: 142 TILDKFAAVGILQEYLDN 159
+DK AAV ILQ YLD+
Sbjct: 120 QYVDKIAAVFILQGYLDS 137
>gi|148553525|ref|YP_001261107.1| Holliday junction resolvase YqgF [Sphingomonas wittichii RW1]
gi|167016511|sp|A5V3V3.1|RUVX_SPHWW RecName: Full=Putative Holliday junction resolvase
gi|148498715|gb|ABQ66969.1| Holliday junction resolvase YqgF [Sphingomonas wittichii RW1]
Length = 151
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 71/141 (50%), Gaps = 11/141 (7%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV 80
RGR GLDVG + +G+++ D IASP +LR K ++D A R+L++ ++G ++
Sbjct: 16 RGRLAGLDVGTRTIGVALCDAGWTIASPAETILRAKFSVD--AAKLRALVAAQLVKGLVI 73
Query: 81 GYPFNRQQNAADAVQ-VKLFIDDLSATKKLE--DMKYAYWNEGFTSKGVELLLNPLDLHP 137
G P N + + Q V+ F + +E + W+E ++++ V L D
Sbjct: 74 GLPLNLDGSDSPRTQSVRAF------ARNVEPFGLPILLWDERWSTQAVTRTLLDADASR 127
Query: 138 VEYKTILDKFAAVGILQEYLD 158
++DK AA ILQ +D
Sbjct: 128 ARRAELVDKLAAAYILQGAID 148
>gi|116251833|ref|YP_767671.1| Holliday junction resolvase-like protein [Rhizobium leguminosarum
bv. viciae 3841]
gi|146325598|sp|Q1MHJ8.1|RUVX_RHIL3 RecName: Full=Putative Holliday junction resolvase
gi|115256481|emb|CAK07565.1| putative Holliday junction resolvase [Rhizobium leguminosarum bv.
viciae 3841]
Length = 164
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 6/147 (4%)
Query: 14 LKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEF 73
+ ++ R GLD+G K +GLS+SD + A+P +V+ R K ID A+
Sbjct: 9 MAETLAPRQAIAGLDLGTKTIGLSMSDLGRRFATPRTVIRRVKFAID--AQALLDFAQSE 66
Query: 74 NLEGFIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNP 132
+ GF++G P N +A VQ + F+ ++ L + YW+E ++ E L
Sbjct: 67 KVAGFVIGLPMNMDGSAGPRVQATRAFVRNMEQKTAL---PFVYWDERLSTVAAERTLLE 123
Query: 133 LDLHPVEYKTILDKFAAVGILQEYLDN 159
+D+ + +D AA ILQ LD
Sbjct: 124 MDVSRAKRAERIDSAAASFILQGALDR 150
>gi|339021771|ref|ZP_08645762.1| Holliday junction resolvase YqgF [Acetobacter tropicalis NBRC
101654]
gi|338751234|dbj|GAA09066.1| Holliday junction resolvase YqgF [Acetobacter tropicalis NBRC
101654]
Length = 158
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 5/150 (3%)
Query: 14 LKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEF 73
L +++ R LG+D G K VGL++SD +A+PL + K+ + MA R+L
Sbjct: 9 LTAALARNDRLLGIDPGRKQVGLALSDVSRMVATPLETV--KRGKLGAMATHIRALADRH 66
Query: 74 NLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGV-ELLLNP 132
+ G ++G P + + A Q D A + W+E +S V +L+
Sbjct: 67 GIGGMVIGIPLSLDGSFGPAAQAA--KDWAMALSDQTGLPVCLWDERLSSSAVNRMLIQE 124
Query: 133 LDLHPVEYKTILDKFAAVGILQEYLDNANR 162
DL + + ++D+ AA ILQ LD+ R
Sbjct: 125 ADLSRKKREGVVDQLAAAYILQAALDSIPR 154
>gi|317122056|ref|YP_004102059.1| Holliday junction resolvase YqgF [Thermaerobacter marianensis DSM
12885]
gi|315592036|gb|ADU51332.1| Holliday junction resolvase YqgF [Thermaerobacter marianensis DSM
12885]
Length = 326
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 6/142 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R+LGLD+G + +G++ISDP+ +A PL L R+ + + A L+ G +VG+
Sbjct: 2 RWLGLDLGSRVIGVAISDPEGIVARPLGSLPRRTDAEN--AAQVADLVRRHGAGGVVVGW 59
Query: 83 PFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P +A + F D A ++ + W+E ++ E +L DL K
Sbjct: 60 PRRLDGTRGPEAEAAERFAD---ALREAGVPRVTLWDERLSTVEAERVLIAADLSRRRRK 116
Query: 142 TILDKFAAVGILQEYLDNANRK 163
I+D+ AA ILQ +L + R+
Sbjct: 117 QIIDRMAATVILQAFLQSQRRQ 138
>gi|403379208|ref|ZP_10921265.1| Holliday junction resolvase YqgF [Paenibacillus sp. JC66]
Length = 138
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 68/142 (47%), Gaps = 6/142 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLD GDK +G++ISD A + + R D+ + LI E +E +VG
Sbjct: 2 RLMGLDYGDKTIGVAISDELGWTAQGVETIRRTNRKADM--KRLGELIREHQVEEIVVGL 59
Query: 83 PFNRQQNAADAVQVKL-FIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N ++ + F + L T KL W+E TS E L D+ + K
Sbjct: 60 PKNMNGTIGPRGELSMEFAEQLQNTFKL---PVHLWDERLTSIAAERTLLEADVSRKKRK 116
Query: 142 TILDKFAAVGILQEYLDNANRK 163
++DK AA+ ILQ Y+D+ R+
Sbjct: 117 QVIDKMAAMLILQGYMDSKKRR 138
>gi|402298197|ref|ZP_10817907.1| Holliday junction resolvase-like protein [Bacillus alcalophilus
ATCC 27647]
gi|401726600|gb|EJS99821.1| Holliday junction resolvase-like protein [Bacillus alcalophilus
ATCC 27647]
Length = 138
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 3/138 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K +G+++SD A L L R ++ + + L+ E + +VG
Sbjct: 2 RTLGLDVGTKTIGVALSDELGWTAQGLVTLKRSEDDLQSDIKSVSELVQEHEVTAIVVGL 61
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + + + F L ++E ++ W+E T+ E +L D+ + K
Sbjct: 62 PKNMNGTIGPSGEMCQAFAKQLE--NEIEGIQVKLWDERLTTVAAERMLITADVSRKKRK 119
Query: 142 TILDKFAAVGILQEYLDN 159
++DK AAV ILQ YLD+
Sbjct: 120 QVIDKMAAVLILQGYLDH 137
>gi|220929652|ref|YP_002506561.1| Holliday junction resolvase-like protein [Clostridium
cellulolyticum H10]
gi|254767508|sp|B8I4S7.1|RUVX_CLOCE RecName: Full=Putative Holliday junction resolvase
gi|219999980|gb|ACL76581.1| Holliday junction resolvase YqgF [Clostridium cellulolyticum H10]
Length = 142
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 69/137 (50%), Gaps = 5/137 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LG+D GD +G++ISDP A L +++ K+++ +I+E+++ ++GY
Sbjct: 2 RILGIDYGDSRIGVAISDPMGWTAQGLE-MIKSKDSLKKAVLRLSEIINEYSVTDIVIGY 60
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + + FI +S + +K W+E T+ +N L + + K
Sbjct: 61 PINMNGTKGPRTERTEEFIKKISDLGQFNIIK---WDERLTTVSAHRTMNELGIKASKKK 117
Query: 142 TILDKFAAVGILQEYLD 158
I+D +AV ILQ YLD
Sbjct: 118 GIVDTMSAVLILQGYLD 134
>gi|338732851|ref|YP_004671324.1| putative Holliday junction resolvase [Simkania negevensis Z]
gi|336482234|emb|CCB88833.1| putative Holliday junction resolvase [Simkania negevensis Z]
Length = 137
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 73/142 (51%), Gaps = 11/142 (7%)
Query: 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKN---TIDLMAEDFRSLISEFNLEGF 78
GR L +D G K +GL++SDP IASPL L KN T+DL+ ++ I+ ++E
Sbjct: 2 GRILSIDYGMKRIGLALSDPMKIIASPLKTLQAGKNAQETLDLLLKE----IASHDIETI 57
Query: 79 IVGYPFNRQQNAAD-AVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHP 137
++G P + ++ ++ V+ +DL W+E TSK VE L+ D+
Sbjct: 58 VIGLPLHLSNEESEISLLVRKLKEDLETKI---STPIILWDERLTSKQVERLMIEGDVKR 114
Query: 138 VEYKTILDKFAAVGILQEYLDN 159
+ +D +A ILQ Y+D+
Sbjct: 115 KKRSQHVDTLSATLILQSYMDS 136
>gi|220931424|ref|YP_002508332.1| Holliday junction resolvase YqgF [Halothermothrix orenii H 168]
gi|254767518|sp|B8D2B0.1|RUVX_HALOH RecName: Full=Putative Holliday junction resolvase
gi|219992734|gb|ACL69337.1| Holliday junction resolvase YqgF [Halothermothrix orenii H 168]
Length = 140
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 73/141 (51%), Gaps = 6/141 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLD GD+ +G++ISD A V++RK DL E + LI ++ +E IVG
Sbjct: 2 RIMGLDYGDRRIGVAISDKLGMTAQGQEVIIRKTPEEDL--EVIKGLIDKYEVEEIIVGM 59
Query: 83 PFNRQQN-AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + A + + FID L +K D W+E ++ E +L D+ + K
Sbjct: 60 PKNMDGSLGPRAEKTRDFIDFL---QKSLDTPVKVWDERLSTVEAERVLIEADVSRKKRK 116
Query: 142 TILDKFAAVGILQEYLDNANR 162
++DK AA ILQ YL+ N+
Sbjct: 117 GVIDKVAASIILQGYLNYQNK 137
>gi|327398201|ref|YP_004339070.1| Holliday junction resolvase [Hippea maritima DSM 10411]
gi|327180830|gb|AEA33011.1| Holliday junction resolvase [Hippea maritima DSM 10411]
Length = 136
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 77/139 (55%), Gaps = 8/139 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LG+D G K +G++ISD N IA P V+ +D + E ++ + + +VG
Sbjct: 2 RILGIDYGTKKIGIAISDETNTIALPHGVIDTDGEYLDKIKE----IVKKNKITRIVVGM 57
Query: 83 PFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE-Y 140
P + + A++ + FI++L+ K+E+++ W+E +++ E +LN ++ +
Sbjct: 58 PITLKGEKGKRALETEDFINELAC--KIENIEIVEWDERLSTRFSERILNKANVKGRKNK 115
Query: 141 KTILDKFAAVGILQEYLDN 159
K ++DK AA ILQ YLD+
Sbjct: 116 KKVIDKIAATFILQGYLDS 134
>gi|197104788|ref|YP_002130165.1| Holliday junction resolvase [Phenylobacterium zucineum HLK1]
gi|226731635|sp|B4R966.1|RUVX_PHEZH RecName: Full=Putative Holliday junction resolvase
gi|196478208|gb|ACG77736.1| putative Holliday junction resolvase [Phenylobacterium zucineum
HLK1]
Length = 156
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 6/137 (4%)
Query: 24 FLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYP 83
+GLD+G+K +G+++SD +ASPL ++ + K T D A+ L+ G ++G P
Sbjct: 19 LVGLDLGEKTIGVAVSDATRMVASPLGLIRKTKFTDD--AKALFKLMESRRASGIVIGLP 76
Query: 84 FNRQQNAADAVQV-KLFIDDLSATKKLEDMKYAYWNEGFTSKGV-ELLLNPLDLHPVEYK 141
N Q + F +L + ED+ A+W+E ++ V +L+ D+
Sbjct: 77 VNMDGTEGTRCQSNRAFARNLLRLR--EDLPIAFWDERMSTMAVNRMLVGEADMTRARRA 134
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ LD
Sbjct: 135 DVVDKMAAAWILQGALD 151
>gi|153953951|ref|YP_001394716.1| Holliday junction resolvase-like protein [Clostridium kluyveri DSM
555]
gi|219854565|ref|YP_002471687.1| hypothetical protein CKR_1222 [Clostridium kluyveri NBRC 12016]
gi|189046093|sp|A5N7T7.1|RUVX_CLOK5 RecName: Full=Putative Holliday junction resolvase
gi|254767509|sp|B9E198.1|RUVX_CLOK1 RecName: Full=Putative Holliday junction resolvase
gi|146346832|gb|EDK33368.1| Predicted Holliday junction resolvase [Clostridium kluyveri DSM
555]
gi|219568289|dbj|BAH06273.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 137
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 72/140 (51%), Gaps = 4/140 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD+G+K +G+++SDP A ++ + RK D+ E+ +++ ++ +E + G
Sbjct: 2 RILGLDIGNKTIGVALSDPLGITAQGITTIKRKGEDRDI--EELKAICDKYKVEVIVCGL 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N N Q + + + +++ ++ W+E T+ + DL + K
Sbjct: 60 PKN--MNGTLGPQSEKVLKFCNIIEEVINLPIKMWDERLTTVAANKAMLEADLSRAKRKK 117
Query: 143 ILDKFAAVGILQEYLDNANR 162
I+DK AA ILQ YLD ++
Sbjct: 118 IVDKMAATYILQGYLDRISK 137
>gi|260893291|ref|YP_003239388.1| Holliday junction resolvase YqgF [Ammonifex degensii KC4]
gi|260865432|gb|ACX52538.1| Holliday junction resolvase YqgF [Ammonifex degensii KC4]
Length = 146
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 69/143 (48%), Gaps = 5/143 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R L LDVGDK +G+++SDP A L VL R + D+ + L + +E ++G
Sbjct: 2 RILALDVGDKTIGVAVSDPFGLTAQGLKVLHRGEEAEDV--QHVLELARRYEVEEVVIGL 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P Q L +L A + L K YW+E FT+K E +L D+ + +
Sbjct: 60 PRTLAGEIGPQAQKVLRFGELLAQQGL---KIIYWDERFTTKEAEKVLLAADVSRKKRRR 116
Query: 143 ILDKFAAVGILQEYLDNANRKVN 165
+ D AAV +L+ YL+ ++
Sbjct: 117 VKDILAAVLLLEAYLEKRRKEAE 139
>gi|256545147|ref|ZP_05472513.1| Holliday junction resolvase [Anaerococcus vaginalis ATCC 51170]
gi|256399188|gb|EEU12799.1| Holliday junction resolvase [Anaerococcus vaginalis ATCC 51170]
Length = 139
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
Query: 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 81
R +GLD+GDK +G+++SDP A + RKK ++D+ E +I+E + I+G
Sbjct: 2 SRIMGLDLGDKTIGVALSDPFFITAQAYITIKRKKASLDI--EKLIEIINEKEVNLIIIG 59
Query: 82 YPFNRQQN-AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
P N A++V F+D L KK D++ Y +E T+ + +L ++++ +
Sbjct: 60 LPKNMNNTLGPQAMKVISFVDLL---KKSTDIEIKYQDERMTTIQSDQVLMDMNVNLKDR 116
Query: 141 KTILDKFAAVGILQEYLDNAN 161
K +DK AA ILQ YLD N
Sbjct: 117 KKYVDKIAASFILQTYLDGRN 137
>gi|329851398|ref|ZP_08266155.1| hypothetical UPF0081 family protein [Asticcacaulis biprosthecum
C19]
gi|328840244|gb|EGF89816.1| hypothetical UPF0081 family protein [Asticcacaulis biprosthecum
C19]
Length = 157
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 7/147 (4%)
Query: 14 LKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEF 73
LK + R LGLD+G+K +G+++SD +ASPL ++ + K T + AE L+
Sbjct: 9 LKAGLPARHALLGLDLGEKTIGVAVSDISLTLASPLELIRKTKFTHE--AERLFHLMQAR 66
Query: 74 NLEGFIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGV-ELLLN 131
G ++G P N Q + F +L +L D+ A+W+E ++S + L+
Sbjct: 67 EAAGLVIGLPVNMDGTEGPRAQSCRAFARNL---LRLRDVPIAFWDERWSSAAMNRFLIE 123
Query: 132 PLDLHPVEYKTILDKFAAVGILQEYLD 158
DL + ++D+ AA ILQ LD
Sbjct: 124 EADLSRAKRAEVIDRNAAAYILQGALD 150
>gi|331085955|ref|ZP_08335038.1| Holliday junction resolvase [Lachnospiraceae bacterium 9_1_43BFAA]
gi|330406878|gb|EGG86383.1| Holliday junction resolvase [Lachnospiraceae bacterium 9_1_43BFAA]
Length = 151
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 67/138 (48%), Gaps = 3/138 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRK-KNTIDLMAEDFRSLISEFNLEGFIVG 81
R +GLD G K VG++ISDP A + + RK +N + +L+ E+ +E ++G
Sbjct: 2 RIMGLDYGSKTVGVAISDPLGLTAQGIETICRKEENKLRKTLARIEALVQEYQVEEIVLG 61
Query: 82 YPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
+P N D + L ++ + + W+E T+ E L ++ + K
Sbjct: 62 FPKNMNNTVGDRAEKSLEFKEMLERRTA--LPVTMWDERLTTVEAERTLIENNVRREDRK 119
Query: 142 TILDKFAAVGILQEYLDN 159
+DK AAV ILQ YLD+
Sbjct: 120 KYVDKIAAVFILQGYLDS 137
>gi|374993669|ref|YP_004969168.1| RNAse H-fold protein YqgF [Desulfosporosinus orientis DSM 765]
gi|357212035|gb|AET66653.1| RNAse H-fold protein YqgF [Desulfosporosinus orientis DSM 765]
Length = 139
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 71/141 (50%), Gaps = 8/141 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLD G K +G+++SD A + + R KN + ++ R LI E+ + +VGY
Sbjct: 2 RIMGLDFGTKTIGVAMSDELFWTAQGVKTIRRSKNEL----QELRELIKEYEVREIVVGY 57
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + + F + L A LE + W+E ++ + L D+ + K
Sbjct: 58 PKNMNGTKGPRCEATEEFAEILRAEFGLEVI---LWDERLSTVAAQRSLIEADMSRAKRK 114
Query: 142 TILDKFAAVGILQEYLDNANR 162
++DK AAV ILQ YLD+ ++
Sbjct: 115 NVIDKMAAVFILQGYLDSKSK 135
>gi|167757700|ref|ZP_02429827.1| hypothetical protein CLOSCI_00030 [Clostridium scindens ATCC 35704]
gi|167664582|gb|EDS08712.1| RNAse H domain protein, YqgF family [Clostridium scindens ATCC
35704]
Length = 141
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 67/139 (48%), Gaps = 5/139 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRK-KNTIDLMAEDFRSLISEFNLEGFIVG 81
R +GLD G K VG++ISDP A + + RK +N + +LI E+ +E ++G
Sbjct: 2 RIMGLDYGSKTVGVAISDPLGITAQAIETICRKDENKLRKTCARIETLIEEYKVERIVLG 61
Query: 82 YPFNRQQNAADAVQVKL-FIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
P + + D + L F LS LE W+E T+ E L + +
Sbjct: 62 LPKHMNNDIGDRAERSLEFGKMLSRRTGLE---VVMWDERLTTVEAERTLIENKVRREDR 118
Query: 141 KTILDKFAAVGILQEYLDN 159
K +DK AAV ILQ YLD+
Sbjct: 119 KKYIDKIAAVFILQGYLDS 137
>gi|357050392|ref|ZP_09111592.1| Holliday junction resolvase [Enterococcus saccharolyticus 30_1]
gi|355381477|gb|EHG28601.1| Holliday junction resolvase [Enterococcus saccharolyticus 30_1]
Length = 143
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 3/143 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG + VG+++SDP A + ++ ++ D + L+ E+ + F+VG
Sbjct: 2 RVMGLDVGSRTVGVAVSDPMGWTAQGIEIIRINEDENDFGYDRLGELVKEYEVTRFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + L A ++ D+ Y +E T+ E +L+ + + K
Sbjct: 62 PKNMNNTIGPRAEASLAYG--KAIEERFDLPVDYQDERLTTVQAERMLVEQANTSRAKRK 119
Query: 142 TILDKFAAVGILQEYLDNANRKV 164
++DK AAV ILQ YLD A +++
Sbjct: 120 KVIDKLAAVMILQNYLDGAGKQL 142
>gi|407785606|ref|ZP_11132753.1| Holliday junction resolvase-like protein [Celeribacter baekdonensis
B30]
gi|407202556|gb|EKE72546.1| Holliday junction resolvase-like protein [Celeribacter baekdonensis
B30]
Length = 157
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 6/134 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD GDK +G++ISD +ASP + + RKK T+D AE +L E + G ++G P N
Sbjct: 24 GLDFGDKTIGVAISDRLRSVASPTTTIRRKKFTLD--AEALLALFKEREVGGIVLGLPRN 81
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
+ Q + F +L+ +L ++ +W+E +S + + D+ + +
Sbjct: 82 MDGSEGPRCQKTRAFARNLA---QLTEIPITFWDERLSSVAADRAMLEADMSRAKRAEKI 138
Query: 145 DKFAAVGILQEYLD 158
D+ AA ILQ LD
Sbjct: 139 DQVAAGVILQGALD 152
>gi|160895347|ref|ZP_02076118.1| hypothetical protein CLOL250_02906 [Clostridium sp. L2-50]
gi|156863040|gb|EDO56471.1| RNAse H domain protein, YqgF family [Clostridium sp. L2-50]
Length = 165
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 65/139 (46%), Gaps = 5/139 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKK-NTIDLMAEDFRSLISEFNLEGFIVG 81
R +GLD G K VG+++SD A PL + RK N + S+I E+ E ++G
Sbjct: 22 RIIGLDYGTKTVGVAVSDALMITAQPLETIERKSANKLRQTLARIESIIEEYQAERIVLG 81
Query: 82 YPFNRQQNAAD-AVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
YP N + A + F +DL LE W+E ++ E +L +
Sbjct: 82 YPKNMNNTIGERAEATEQFKEDLERRTGLE---VILWDERLSTVEAERILMDTGVRRENR 138
Query: 141 KTILDKFAAVGILQEYLDN 159
K +DK AA ILQ YLD+
Sbjct: 139 KQYVDKMAAAVILQNYLDS 157
>gi|410453639|ref|ZP_11307585.1| Holliday junction resolvase YqgF [Bacillus bataviensis LMG 21833]
gi|409932936|gb|EKN69888.1| Holliday junction resolvase YqgF [Bacillus bataviensis LMG 21833]
Length = 138
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 4/140 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG+++SD A L L + E+ LISE+ ++ ++G+
Sbjct: 2 RAMGLDVGSKTVGVALSDELGWTAQGLKTLKINEEKQQFGFEEIGQLISEYQVDTVVIGF 61
Query: 83 PFNRQQNAADAVQV-KLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + K F ++ A + + W+E T+ E +L D+ + K
Sbjct: 62 PKNMNGTVGPRGEASKQFAAEIEAQFAVPTV---LWDERLTTMAAERVLLEADVSRKKRK 118
Query: 142 TILDKFAAVGILQEYLDNAN 161
++DK AAV ILQ YLD+ N
Sbjct: 119 KVIDKMAAVMILQGYLDSKN 138
>gi|27380205|ref|NP_771734.1| Holliday junction resolvase-like protein [Bradyrhizobium japonicum
USDA 110]
gi|27353359|dbj|BAC50359.1| blr5094 [Bradyrhizobium japonicum USDA 110]
Length = 167
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 77/149 (51%), Gaps = 9/149 (6%)
Query: 20 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFI 79
+RG +GLD+G K +G+++S+P ++A+ + + RK D A ++ +E + GF+
Sbjct: 23 ERGGLVGLDLGTKTIGVAVSNPDRRLATGVETIQRKAFKQD--AARLLAIAAERKVVGFV 80
Query: 80 VGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
+G P N + Q + F +L+ L + W+E ++ VE L +D+
Sbjct: 81 LGLPINMDGSEGPRAQSTRAFARNLA---NLTTLPIGLWDERLSTAAVERELIGMDVSRA 137
Query: 139 EYKTILDKFAAVGILQEYLDNANRKVNLK 167
+ ++D+ AA+ ILQ LD R NL+
Sbjct: 138 KRAEVIDEHAAIFILQGALD---RLANLR 163
>gi|225568728|ref|ZP_03777753.1| hypothetical protein CLOHYLEM_04807 [Clostridium hylemonae DSM
15053]
gi|225162227|gb|EEG74846.1| hypothetical protein CLOHYLEM_04807 [Clostridium hylemonae DSM
15053]
Length = 145
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 3/138 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRK-KNTIDLMAEDFRSLISEFNLEGFIVG 81
R +GLD G+K VG+++SDP A + + RK +N + LI E+ +E ++G
Sbjct: 4 RIMGLDYGEKTVGVAVSDPLGLTAQGIETIFRKEENKLRQTCARIEELIREYEVERIVLG 63
Query: 82 YPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P + + D + L ++ K+ ++ W+E T+ E L + + K
Sbjct: 64 LPKHMNNDIGDRAEQSLEFGEM--LKRRTGLEVVMWDERLTTVEAERTLIENKVRREDRK 121
Query: 142 TILDKFAAVGILQEYLDN 159
+DK AAV ILQ YLD+
Sbjct: 122 KYIDKIAAVFILQGYLDS 139
>gi|170742466|ref|YP_001771121.1| Holliday junction resolvase YqgF [Methylobacterium sp. 4-46]
gi|168196740|gb|ACA18687.1| Holliday junction resolvase YqgF [Methylobacterium sp. 4-46]
Length = 168
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 6/137 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD+G K +GL++SD +IASPL + R K T D A ++ +E + G +VG+
Sbjct: 19 RLLGLDLGTKTIGLALSDVGRRIASPLETIRRVKFTPD--ARRLAAIAAEHGVGGLVVGH 76
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + Q + F+ +L+ L + ++E ++ V L D
Sbjct: 77 PLNMDGSEGPRAQSTRAFVRNLAPILPLPVL---LFDERLSTAAVTRTLLEADASRARRG 133
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ LD
Sbjct: 134 KLVDKLAAAYILQGCLD 150
>gi|118442957|ref|YP_878351.1| Holliday junction resolvase-like protein [Clostridium novyi NT]
gi|167012715|sp|A0Q149.1|RUVX_CLONN RecName: Full=Putative Holliday junction resolvase
gi|118133413|gb|ABK60457.1| Putative Holliday junction resolvase [Clostridium novyi NT]
Length = 135
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 4/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVGD+ +G+++SDP A ++ + RK D+ ++ + + E+ +E I G
Sbjct: 2 RVLGLDVGDRTIGVAVSDPLGFTAQGITTVHRKSVKEDI--DELKKICKEYAVELIISGL 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N N Q + I+ K M W+E T+ + +L + K
Sbjct: 60 PKN--MNGTVGEQGEKVIEFCELLKSELKMPIKMWDERLTTVAAHRAMLEANLSRAKRKK 117
Query: 143 ILDKFAAVGILQEYLDN 159
I+DK AA ILQ YLD+
Sbjct: 118 IVDKMAATYILQGYLDS 134
>gi|400291062|ref|ZP_10793089.1| Holliday junction resolvase-like protein [Streptococcus ratti FA-1
= DSM 20564]
gi|399921853|gb|EJN94670.1| Holliday junction resolvase-like protein [Streptococcus ratti FA-1
= DSM 20564]
Length = 136
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 69/135 (51%), Gaps = 3/135 (2%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLDVG K VG++ISDP A L ++ + + E +L+ E+ +E F+VG P
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIITINEAHEEFGFERLAALVKEYKVEKFVVGLPK 60
Query: 85 NRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYKTI 143
N + V+ + KKL ++ Y +E T+ E +L+ D+ + K +
Sbjct: 61 NMNNTSGPRVEASRAYGE--KIKKLFELPVDYQDERLTTVQAERMLVEQADVSRGKRKKV 118
Query: 144 LDKFAAVGILQEYLD 158
+DK AA ILQ YLD
Sbjct: 119 IDKLAAQLILQNYLD 133
>gi|116872931|ref|YP_849712.1| Holliday junction resolvase-like protein [Listeria welshimeri
serovar 6b str. SLCC5334]
gi|116741809|emb|CAK20933.1| holliday junction resolvase, putative [Listeria welshimeri serovar
6b str. SLCC5334]
Length = 135
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 65/138 (47%), Gaps = 4/138 (2%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLDVG K VG++ISDP A + + + + + L+ E+ +E +VG P
Sbjct: 1 MGLDVGSKTVGVAISDPLGWTAQGVETIQIDEKRKQFGYDRVKELVLEYEVEKVVVGLPK 60
Query: 85 NRQQN-AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143
N A K++ + L A L W+E T+ E L D+ + K +
Sbjct: 61 NMNNTIGPRAESSKIYAEVLEARIGL---PVVLWDERLTTSAAERTLIEADVSRKKRKEV 117
Query: 144 LDKFAAVGILQEYLDNAN 161
+DK AAV ILQ YLD N
Sbjct: 118 IDKLAAVMILQSYLDTTN 135
>gi|357639683|ref|ZP_09137556.1| RNAse H domain protein, YqgF family [Streptococcus urinalis
2285-97]
gi|418416989|ref|ZP_12990187.1| RNAse H-fold protein YqgF [Streptococcus urinalis FB127-CNA-2]
gi|357588137|gb|EHJ57545.1| RNAse H domain protein, YqgF family [Streptococcus urinalis
2285-97]
gi|410873045|gb|EKS20981.1| RNAse H-fold protein YqgF [Streptococcus urinalis FB127-CNA-2]
Length = 139
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ + D + L+ + +E F+VG
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIKINEEVGDFGFDRLSELVGAYKVEKFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + V+ K+L D+ Y +E T+ E +L+ D+ + K
Sbjct: 62 PKNMNNTSGPRVEASQAYG--KKIKELFDIPVEYQDERLTTVQAERMLIEQADVSRGKRK 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 120 KVIDKLAAQLILQNYLD 136
>gi|144897944|emb|CAM74808.1| Holliday junction resolvase [Magnetospirillum gryphiswaldense
MSR-1]
Length = 163
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 67/146 (45%), Gaps = 6/146 (4%)
Query: 14 LKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEF 73
LK + + R +GLD+G K +GL++SD + IASP + R K T D AE + + +
Sbjct: 9 LKTALPRHARLMGLDLGTKTIGLALSDVRLSIASPFDTIRRTKFTKD--AEALFAALDKH 66
Query: 74 NLEGFIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNP 132
G ++G P Q + F +L L D+ +W+E ++ V L
Sbjct: 67 EAAGIVLGLPVEMDGTEGARCQSTRAFARNLLG---LRDLPIVFWDERLSTAAVTRTLLE 123
Query: 133 LDLHPVEYKTILDKFAAVGILQEYLD 158
D ++DK AA ILQ LD
Sbjct: 124 ADSSRARRAEVVDKMAAAYILQGALD 149
>gi|145224344|ref|YP_001135022.1| Holliday junction resolvase YqgF [Mycobacterium gilvum PYR-GCK]
gi|315444676|ref|YP_004077555.1| hypothetical protein Mspyr1_31030 [Mycobacterium gilvum Spyr1]
gi|145216830|gb|ABP46234.1| Holliday junction resolvase YqgF [Mycobacterium gilvum PYR-GCK]
gi|315262979|gb|ADT99720.1| conserved hypothetical protein TIGR00250 [Mycobacterium gilvum
Spyr1]
Length = 175
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 81/153 (52%), Gaps = 12/153 (7%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV 80
RGR LG+DVG +G+++SDP +A+P+ + R + + + +L+ E+ ++
Sbjct: 25 RGRRLGIDVGSVRIGVAVSDPDAVLATPVETVTRDRRSGRHLRR-LTTLVGEYEAVEVVI 83
Query: 81 GYP---FNRQQNAA-DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH 136
G P NR ++A DA +V D L+A ++ + +E FT+ + L +
Sbjct: 84 GLPRTLGNRAGSSAQDATEVA---DQLAA--RIAPVPVRLADERFTTVTAQRELREAGVR 138
Query: 137 PVEYKTILDKFAAVGILQEYLDNANRKVNLKAN 169
K+++D+ AAVGILQ +LD R+ L A+
Sbjct: 139 ARGQKSMIDQAAAVGILQNWLD--QRRAALPAH 169
>gi|32130021|sp|Q89K24.1|RUVX_BRAJA RecName: Full=Putative Holliday junction resolvase
Length = 161
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 77/151 (50%), Gaps = 9/151 (5%)
Query: 20 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFI 79
+RG +GLD+G K +G+++S+P ++A+ + + RK D A ++ +E + GF+
Sbjct: 17 ERGGLVGLDLGTKTIGVAVSNPDRRLATGVETIQRKAFKQD--AARLLAIAAERKVVGFV 74
Query: 80 VGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
+G P N + Q + F +L+ L + W+E ++ VE L +D+
Sbjct: 75 LGLPINMDGSEGPRAQSTRAFARNLA---NLTTLPIGLWDERLSTAAVERELIGMDVSRA 131
Query: 139 EYKTILDKFAAVGILQEYLDNANRKVNLKAN 169
+ ++D+ AA+ ILQ LD R NL+
Sbjct: 132 KRAEVIDEHAAIFILQGALD---RLANLRTG 159
>gi|158320692|ref|YP_001513199.1| Holliday junction resolvase YqgF [Alkaliphilus oremlandii OhILAs]
gi|158140891|gb|ABW19203.1| Holliday junction resolvase YqgF [Alkaliphilus oremlandii OhILAs]
Length = 139
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 71/141 (50%), Gaps = 5/141 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVGDK +G++ISD A L + R DL + +I E ++ +VG
Sbjct: 3 RSMGLDVGDKTIGVAISDLFGWTAQGLETIQRIGIKKDL--QRLEVIIKEHDINKIVVGL 60
Query: 83 PFNRQQN-AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N +V F + L + +D++ W+E T+ E L D+ + K
Sbjct: 61 PKNMNGTIGPQGEKVLEFNERLKG--RFKDVEIVLWDERLTTVAAERSLIEADVSRKKRK 118
Query: 142 TILDKFAAVGILQEYLDNANR 162
++DK AAV ILQ YLD+A+R
Sbjct: 119 EVIDKMAAVYILQGYLDSASR 139
>gi|383754365|ref|YP_005433268.1| putative Holliday junction resolvase [Selenomonas ruminantium
subsp. lactilytica TAM6421]
gi|381366417|dbj|BAL83245.1| putative Holliday junction resolvase [Selenomonas ruminantium
subsp. lactilytica TAM6421]
Length = 138
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 74/138 (53%), Gaps = 5/138 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R++ LD+GD+ VG+++SD A + + R + DL D LI+++ ++ + GY
Sbjct: 3 RYMSLDIGDRTVGIAVSDLLGLTAQGVETIRRGELEADLNRLD--ELIAQYEVDELVSGY 60
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + Q VK F+ ++S K+ D+ +W+E ++ L D+ + +
Sbjct: 61 PKNMNGTEGERCQIVKDFMAEVS--KRHPDLPVHFWDERLSTVAATRSLIEADVSRKKRR 118
Query: 142 TILDKFAAVGILQEYLDN 159
++DK AAV ILQ +LD+
Sbjct: 119 KVIDKMAAVFILQGWLDS 136
>gi|345023313|ref|ZP_08786926.1| hypothetical protein OTW25_18723 [Ornithinibacillus scapharcae
TW25]
Length = 137
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 4/138 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K +G++ISD A ++ + + I + + +I E N+E I+G
Sbjct: 2 RILGLDVGSKTIGVAISDELGWTAQGITTIKWDETDIKSADSELKQIIDEHNIEKVIIGL 61
Query: 83 PFNRQQNAADAVQV-KLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + + K + + L +E + W+E T+ E +L D+ + K
Sbjct: 62 PKNMNGTIGERGEASKRYAEYLEEVFHVETV---LWDERLTTMAAERVLLEADVSRKKRK 118
Query: 142 TILDKFAAVGILQEYLDN 159
++DK AA+ ILQ YLD
Sbjct: 119 KVIDKMAAMMILQGYLDQ 136
>gi|126729458|ref|ZP_01745272.1| hypothetical protein SSE37_24699 [Sagittula stellata E-37]
gi|126710448|gb|EBA09500.1| hypothetical protein SSE37_24699 [Sagittula stellata E-37]
Length = 156
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 24 FLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYP 83
+GLD+G K +G+++SD +A+PL + RKK +D AE ++LI+ + G I+G P
Sbjct: 19 LMGLDLGTKTIGVAVSDGLRSVATPLETVKRKKFGVD--AERLQALIAGRRIGGLILGLP 76
Query: 84 FNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
N Q + F + +A L D YW+E ++ E L D
Sbjct: 77 RNMDGTEGPRCQSTRAFARNFAA---LWDGPIGYWDERLSTVAAEKALLEADTTRKRRAE 133
Query: 143 ILDKFAAVGILQEYLDN 159
++D AA ILQ LD
Sbjct: 134 VIDHVAASYILQGALDR 150
>gi|392957283|ref|ZP_10322807.1| Holliday junction resolvase-like protein [Bacillus macauensis
ZFHKF-1]
gi|391876690|gb|EIT85286.1| Holliday junction resolvase-like protein [Bacillus macauensis
ZFHKF-1]
Length = 142
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG VG+++SD A + + RK + D + E ++++ +E +VG
Sbjct: 3 RVLGLDVGSHTVGVAVSDSMGWTAQGIETVKRKPHQPDEVFERIGEWVTQYEVEAIVVGL 62
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N N + + + ++ ++ W+E T+ E +L D+ + K
Sbjct: 63 PKN--MNGSIGPSGEACQAFAAQAQERYNVPVVLWDERLTTMAAEKMLISADVSRKKRKQ 120
Query: 143 ILDKFAAVGILQEYLD 158
++DK AAV ILQ YLD
Sbjct: 121 VIDKMAAVLILQGYLD 136
>gi|310829301|ref|YP_003961658.1| RNAse H-fold protein YqgF [Eubacterium limosum KIST612]
gi|308741035|gb|ADO38695.1| RNAse H-fold protein YqgF [Eubacterium limosum KIST612]
Length = 178
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 69/139 (49%), Gaps = 6/139 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVGDKY+G+++SDP A R DL F ++ +FN+ + G
Sbjct: 41 RLLGLDVGDKYIGIAVSDPLGITAQGYRTWKRGTRDDDLAF--FTDVVEQFNVTTLVSGL 98
Query: 83 PFNRQQN-AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P + + N A A + + F L KK +++ Y +E TSK E +L + + K
Sbjct: 99 PKDMEGNETAQARKTRNFCQFL---KKRLNLEVVYIDERLTSKASERVLIEGGVRREKRK 155
Query: 142 TILDKFAAVGILQEYLDNA 160
+D AA ILQ YLD+
Sbjct: 156 EYIDTLAAQMILQVYLDSG 174
>gi|254477517|ref|ZP_05090903.1| conserved hypothetical protein TIGR00250 [Ruegeria sp. R11]
gi|214031760|gb|EEB72595.1| conserved hypothetical protein TIGR00250 [Ruegeria sp. R11]
Length = 157
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 64/135 (47%), Gaps = 6/135 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD GDK VG++ISD +A+PL + RKK T+D AE ++ + ++G P N
Sbjct: 21 GLDFGDKTVGVAISDRMGTVATPLETIRRKKFTLD--AEKLFEIVKAREIGALLLGLPRN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
Q + F +LS +L D+ +W+E ++ E L D ++
Sbjct: 79 MDGTEGPRCQKTRAFARNLS---QLTDLPIGFWDERLSTVAAERALLEADTSRKRRSEVI 135
Query: 145 DKFAAVGILQEYLDN 159
D AA ILQ LD
Sbjct: 136 DHVAASYILQGALDR 150
>gi|310658791|ref|YP_003936512.1| putative Holliday junction resolvase [[Clostridium] sticklandii]
gi|308825569|emb|CBH21607.1| putative Holliday junction resolvase [[Clostridium] sticklandii]
Length = 139
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 78/141 (55%), Gaps = 10/141 (7%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRK--KNTIDLMAEDFRSLISEFNLEGFIV 80
R LGLD+GDK +G+++SD +A PL L RK K I+ +AE +I + +++ +V
Sbjct: 3 RILGLDIGDKRIGIAVSDLLGMMAQPLYTLTRKSTKEAINEIAE----IIQKEDIKQVVV 58
Query: 81 GYPFNRQQNAADAVQVKLFID--DLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
G P N ++++ +Q K D L K +++ Y +E TSK L+ + L
Sbjct: 59 GLPKN--MDSSEGIQAKRTRDFSQLLLEKTNSNIEIIYCDERLTSKMARQSLSHMKLAKA 116
Query: 139 EYKTILDKFAAVGILQEYLDN 159
+ K ++D AAV ILQ YLD+
Sbjct: 117 KEKKLIDTAAAVHILQGYLDS 137
>gi|407473797|ref|YP_006788197.1| holliday junction resolvase [Clostridium acidurici 9a]
gi|407050305|gb|AFS78350.1| holliday junction resolvase [Clostridium acidurici 9a]
Length = 137
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 71/139 (51%), Gaps = 6/139 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVGDK +G+++SDP + ++ + RK D+ E+ +S++ E+ +E ++G
Sbjct: 3 RIMGLDVGDKTIGVAVSDPLGITSQGVTTIRRKGIKSDI--EELKSIVEEYCIEKVVIGL 60
Query: 83 PFNRQQN-AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N +V F + +LE +E T+ E +L D+ + K
Sbjct: 61 PKNMNNTIGPQGEKVLKFSEKFKEKFELE---IILQDERLTTVSAERVLIDADVSRKKRK 117
Query: 142 TILDKFAAVGILQEYLDNA 160
++DK AA ILQ YLD +
Sbjct: 118 DVIDKVAATYILQSYLDRS 136
>gi|427413953|ref|ZP_18904144.1| RNAse H-fold protein YqgF [Veillonella ratti ACS-216-V-Col6b]
gi|425714994|gb|EKU77993.1| RNAse H-fold protein YqgF [Veillonella ratti ACS-216-V-Col6b]
Length = 140
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 74/144 (51%), Gaps = 12/144 (8%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDF---RSLISEFNLEGFI 79
R + LDVG + +G++ SD A + + R + DF + LI+E+ +E +
Sbjct: 2 RIMSLDVGSRTIGVACSDALYMTAQGIETIRRTS-----LERDFSRLQELITEYEVEEIV 56
Query: 80 VGYPFNRQQNAAD-AVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
VG P N D A++ + F+ + +++ D+ +W+E ++ E L D+
Sbjct: 57 VGMPKNMNGTKGDRALKTEEFVAKM---QEVIDVPVTFWDERLSTVMAERSLIAADVSRK 113
Query: 139 EYKTILDKFAAVGILQEYLDNANR 162
+ K ++DK AAV ILQ YLD+ +R
Sbjct: 114 KRKDVIDKMAAVVILQGYLDSRSR 137
>gi|86138500|ref|ZP_01057074.1| hypothetical protein MED193_05331 [Roseobacter sp. MED193]
gi|85825025|gb|EAQ45226.1| hypothetical protein MED193_05331 [Roseobacter sp. MED193]
Length = 157
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 6/134 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD GDK VG++ISD +A+PL + RKK T+D A+ ++ + + G ++G P N
Sbjct: 21 GLDFGDKTVGVAISDRMGTVATPLETIRRKKFTLD--ADHLFEIVKKREIGGLVLGLPRN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
+ Q + F +LS +L ++ +W+E ++ E L D ++
Sbjct: 79 MDGSEGPRCQKTRAFARNLS---RLTELPIGFWDERLSTVAAERALLEADTSRKRRAELI 135
Query: 145 DKFAAVGILQEYLD 158
D AA ILQ LD
Sbjct: 136 DHVAASYILQGALD 149
>gi|298291510|ref|YP_003693449.1| Holliday junction resolvase YqgF [Starkeya novella DSM 506]
gi|296928021|gb|ADH88830.1| Holliday junction resolvase YqgF [Starkeya novella DSM 506]
Length = 160
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 6/140 (4%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV 80
RG +GLD+G K +G++ SDP +IA+ + + RK+ T D A SL + G ++
Sbjct: 18 RGSLIGLDLGTKTIGVASSDPDRRIAAGVETIARKQFTPD--AGRVLSLAAARGAVGLVL 75
Query: 81 GYPFNRQQNAADAVQV-KLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
G P N + Q + F +LS +L ++ W+E ++ VE + D+
Sbjct: 76 GLPVNMDGSEGPRAQASRAFARNLS---RLTELPIMLWDERLSTAAVERDMIATDMSRAR 132
Query: 140 YKTILDKFAAVGILQEYLDN 159
++D+ AA ILQ LD
Sbjct: 133 RAEVVDQQAAAFILQGALDR 152
>gi|289434782|ref|YP_003464654.1| holliday junction resolvase [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289171026|emb|CBH27568.1| holliday junction resolvase, putative [Listeria seeligeri serovar
1/2b str. SLCC3954]
Length = 135
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 65/138 (47%), Gaps = 4/138 (2%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLDVG K VG++ISDP A + + + + + L+ E+ +E +VG P
Sbjct: 1 MGLDVGSKTVGVAISDPLGWTAQGVETIQIDEKRKQFGYDRVKELVLEYEVEKVVVGLPK 60
Query: 85 NRQQN-AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143
N A K++ + L A L W+E T+ E L D+ + K +
Sbjct: 61 NMNNTIGPRAESSKIYAEVLEARIGL---PVVLWDERLTTTAAERTLIEADVSRKKRKEV 117
Query: 144 LDKFAAVGILQEYLDNAN 161
+DK AAV ILQ YLD N
Sbjct: 118 IDKLAAVMILQSYLDTTN 135
>gi|340027802|ref|ZP_08663865.1| Holliday junction resolvase-like protein [Paracoccus sp. TRP]
Length = 155
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 71/141 (50%), Gaps = 6/141 (4%)
Query: 20 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFI 79
+ G +GLD+G K +G+++SD +ASPL+V+ R K T+D A+ ++ E L G +
Sbjct: 15 RSGAIVGLDLGTKTIGVAVSDGLRGVASPLTVIRRTKFTLD--AQALLKIVDERALVGLV 72
Query: 80 VGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
+G P N + Q + F +L ++L + +W+E ++ E L D
Sbjct: 73 LGLPRNMDGSEGPRAQSTRAFARNL---ERLTPLPITFWDERLSTVAAERALLEGDTSRK 129
Query: 139 EYKTILDKFAAVGILQEYLDN 159
++D+ AA ILQ LD
Sbjct: 130 RRAEVIDQVAAGYILQGALDR 150
>gi|352518044|ref|YP_004887361.1| putative Holliday junction resolvase [Tetragenococcus halophilus
NBRC 12172]
gi|348602151|dbj|BAK95197.1| putative Holliday junction resolvase [Tetragenococcus halophilus
NBRC 12172]
Length = 140
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 9/141 (6%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A + ++ + + LI ++ +E F+VG
Sbjct: 2 RTMGLDVGSKTVGVAISDPLGWTAQGIEIVSIDEEEGEFGFARINELIEQYEVEQFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTSKGVE-LLLNPLDLHPV 138
P N + Q +S KKLE+ + Y +E T+ E +L+ D
Sbjct: 62 PKNMNNSIGPRAQA-----SMSYGKKLEEYYQLPVIYQDERLTTVQAERMLVEQADTSRK 116
Query: 139 EYKTILDKFAAVGILQEYLDN 159
+ K ++DK AAV ILQ YLD
Sbjct: 117 KRKKVIDKLAAVVILQNYLDT 137
>gi|417939088|ref|ZP_12582381.1| RNAse H domain protein, YqgF family [Streptococcus infantis SK970]
gi|343390533|gb|EGV03113.1| RNAse H domain protein, YqgF family [Streptococcus infantis SK970]
Length = 139
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 71/140 (50%), Gaps = 9/140 (6%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ ++ + E + L+ + +E F+VG
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGEFGFERLKELVDTYKVERFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTSKGVE-LLLNPLDLHPV 138
P N + V+ + +KLE+ + Y +E T+ E +L+ D+
Sbjct: 62 PKNMNNTSGPRVEA-----SQTYGEKLEELFGLPVEYQDERLTTVAAERMLIEQADISRN 116
Query: 139 EYKTILDKFAAVGILQEYLD 158
+ K ++DK AA ILQ YLD
Sbjct: 117 KRKKVIDKLAAQLILQNYLD 136
>gi|363895051|ref|ZP_09322071.1| hypothetical protein HMPREF9629_00369 [Eubacteriaceae bacterium
ACC19a]
gi|361959808|gb|EHL13069.1| hypothetical protein HMPREF9629_00369 [Eubacteriaceae bacterium
ACC19a]
Length = 142
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 5/136 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
+ L LDVG K +G++I+D A P S + R KN ++ + ++I E +++ +VG
Sbjct: 3 KILALDVGKKKIGIAITDLLQITAQPHSTI-RSKN-LEEQIDKIIAIIDENSIKTVVVGL 60
Query: 83 PFNRQQNAAD-AVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + D A K F++ +SA K +D++ Y +E TSK L +++ ++ K
Sbjct: 61 PKNMNDSEGDQASWTKNFVEKISAKK--QDIEIVYIDERLTSKMALSSLKHMNMKKIKEK 118
Query: 142 TILDKFAAVGILQEYL 157
++D AAV IL+ YL
Sbjct: 119 GLIDTVAAVNILETYL 134
>gi|83952340|ref|ZP_00961071.1| putative endonuclease involved in recombination [Roseovarius
nubinhibens ISM]
gi|83836013|gb|EAP75311.1| putative endonuclease involved in recombination [Roseovarius
nubinhibens ISM]
Length = 158
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 6/138 (4%)
Query: 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 81
G +GLD+G K VG+++SD +A+PL + R+K T+D A + LI+ ++ G ++G
Sbjct: 17 GALMGLDLGTKTVGVAVSDGMRGVATPLETVKRQKFTLD--AARLQELIAARSVVGVVLG 74
Query: 82 YPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
P N + Q + F + + +L D+ +W+E ++ E L D
Sbjct: 75 LPRNMDGSEGPRCQSTRAFARNFA---QLTDLPIGFWDERLSTVAAERALLEADTSRKRR 131
Query: 141 KTILDKFAAVGILQEYLD 158
++D AA ILQ LD
Sbjct: 132 AEVIDHVAASYILQGALD 149
>gi|444910706|ref|ZP_21230886.1| Putative Holliday junction resolvase [Cystobacter fuscus DSM 2262]
gi|444718907|gb|ELW59713.1| Putative Holliday junction resolvase [Cystobacter fuscus DSM 2262]
Length = 153
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 8/150 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K +G+++SDP A ++ + R DL A ++L+ E+ + F+VG
Sbjct: 2 RTLGLDVGTKTIGVAVSDPLGLTAQTVTTIRRSNLKADLAA--LKALVEEYEAQAFVVGL 59
Query: 83 PFNRQ-QNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N A + F+D L+ T L +E ++ + L DL + +
Sbjct: 60 PLNMDGSEGPRAEATRKFVDVLTQTFGL---PVELCDERLSTVAAQRTLLEADLSRAKRR 116
Query: 142 TILDKFAAVGILQEYLD--NANRKVNLKAN 169
++D+ AA ILQ +LD + R N A
Sbjct: 117 EVIDQMAAQFILQGWLDARSIARTTNFHAG 146
>gi|78044200|ref|YP_359400.1| hypothetical protein CHY_0542 [Carboxydothermus hydrogenoformans
Z-2901]
gi|146325559|sp|Q3AEN4.1|RUVX_CARHZ RecName: Full=Putative Holliday junction resolvase
gi|77996315|gb|ABB15214.1| conserved hypothetical protein TIGR00250 [Carboxydothermus
hydrogenoformans Z-2901]
Length = 138
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 6/137 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
+ LGLDVGDK +G+++SD A L+V+ R DL E+ + +I ++ ++GY
Sbjct: 2 KVLGLDVGDKKIGVALSDELGLTAQGLTVIYRTSLKKDL--EEIKKIIDLHHVTEVVIGY 59
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N A + VK F +L K +K +W+E ++ E LL D+ + K
Sbjct: 60 PRNMNGTAGPRAELVKRFARELY---KFTGIKPVFWDERLSTVEAEKLLISGDISRRKRK 116
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA IL YL+
Sbjct: 117 KVIDKLAATLILSGYLN 133
>gi|322390444|ref|ZP_08063964.1| crossover junction endodeoxyribonuclease [Streptococcus
parasanguinis ATCC 903]
gi|321142843|gb|EFX38301.1| crossover junction endodeoxyribonuclease [Streptococcus
parasanguinis ATCC 903]
Length = 139
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG+++SDP A L ++ ++ + E L++++ ++ F+VG
Sbjct: 2 RIMGLDVGSKTVGVAVSDPLGFTAQGLEIIQIDEDKKEFGLERLAELVAQYKVDRFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + V+ + A K M Y +E T+ E +L+ D+ + K
Sbjct: 62 PKNMNNTSGPRVEASQAYGAMIAEKF--GMPVDYQDERLTTVAAERMLIEQADISRSKRK 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 120 KVIDKLAAQLILQNYLD 136
>gi|375084609|ref|ZP_09731471.1| RNAse H-fold protein YqgF [Megamonas funiformis YIT 11815]
gi|374567998|gb|EHR39194.1| RNAse H-fold protein YqgF [Megamonas funiformis YIT 11815]
Length = 137
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 5/138 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R + LD+GD+ VG+++SD A + + RK DL R L ++ + F+VG
Sbjct: 2 RIMSLDIGDRTVGIAVSDELLFTAQGVETIRRKSYKHDLAR--IRELSKQYETKKFVVGL 59
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + VK F D + + + D + +W+E ++ + L D+ + K
Sbjct: 60 PKNMNGTVGERCDIVKHFTDKI--LEDIPDAEIIFWDERLSTVAADRYLLEADVSRAKRK 117
Query: 142 TILDKFAAVGILQEYLDN 159
++DK AAV ILQ YLD+
Sbjct: 118 KVIDKMAAVFILQGYLDS 135
>gi|258645601|ref|ZP_05733070.1| putative Holliday junction resolvase [Dialister invisus DSM 15470]
gi|260402959|gb|EEW96506.1| putative Holliday junction resolvase [Dialister invisus DSM 15470]
Length = 142
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 5/138 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R + LDVG + +G+++SD A + + D + R L E+N+E F++G
Sbjct: 2 RIMSLDVGSQTIGVAVSDLFGWTAQGVETIRHTTREKDFVR--LRHLADEYNVEEFVIGM 59
Query: 83 PFNRQ-QNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N A Q + F + L+A D+ Y +W+E T+ + L D+ + K
Sbjct: 60 PLNMNGTKGMRAEQTEKFAEALAAA--FPDIPYHFWDERLTTVMAQRQLIEADVSRKKRK 117
Query: 142 TILDKFAAVGILQEYLDN 159
++DK AAV IL+ YL +
Sbjct: 118 KVIDKMAAVVILEGYLQH 135
>gi|226324641|ref|ZP_03800159.1| hypothetical protein COPCOM_02426 [Coprococcus comes ATCC 27758]
gi|225207089|gb|EEG89443.1| RNAse H domain protein, YqgF family [Coprococcus comes ATCC 27758]
Length = 143
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 3/138 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRK-KNTIDLMAEDFRSLISEFNLEGFIVG 81
R +GLD G K VG+++SDP A + + RK +N + SL +E+ +E F++G
Sbjct: 3 RIMGLDYGTKTVGVAVSDPLGITAQAVETVTRKDENKLRKTLARIESLATEYGVEKFVIG 62
Query: 82 YPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
+P + + + + L ++ K+ ++ W+E T+ E L + K
Sbjct: 63 FPKHMNNDIGERAEKALEFGEM--LKRRTGIEIVMWDERLTTVEAERTLMESGVRRENRK 120
Query: 142 TILDKFAAVGILQEYLDN 159
+D+ AAV ILQ YLD+
Sbjct: 121 QYVDQIAAVFILQGYLDS 138
>gi|39936176|ref|NP_948452.1| Holliday junction resolvase-like protein [Rhodopseudomonas
palustris CGA009]
gi|192291893|ref|YP_001992498.1| Holliday junction resolvase-like protein [Rhodopseudomonas
palustris TIE-1]
gi|62900984|sp|Q6N569.1|RUVX_RHOPA RecName: Full=Putative Holliday junction resolvase
gi|226731645|sp|B3Q9X0.1|RUVX_RHOPT RecName: Full=Putative Holliday junction resolvase
gi|39650031|emb|CAE28554.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
gi|192285642|gb|ACF02023.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris TIE-1]
Length = 160
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 6/139 (4%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV 80
RG LGLD+G K +G++ SDP K+A+ + + RK T D +L +E GF++
Sbjct: 18 RGALLGLDLGTKTIGVAASDPDRKLATGVETIARKAFTADAARLL--ALAAERTACGFVL 75
Query: 81 GYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
G P N + Q + F +LS +L ++ W+E ++ VE L D+ +
Sbjct: 76 GLPLNMDGSEGPRAQSTRAFARNLS---RLTELPIGLWDERLSTAAVERELIANDVSRAK 132
Query: 140 YKTILDKFAAVGILQEYLD 158
++D+ AA+ ILQ LD
Sbjct: 133 RAKVIDEHAAIFILQGALD 151
>gi|311031560|ref|ZP_07709650.1| Holliday junction resolvase-like protein [Bacillus sp. m3-13]
Length = 138
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 2/137 (1%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K VG++ISD A L + + +L + + +I+E+ E +VG
Sbjct: 2 RILGLDVGSKTVGVAISDEMGWTAQGLETIKIDEAIKNLGFKRLKQIIAEYKPEKVVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N + + ++ K + YW+E ++ E +L D+ + K
Sbjct: 62 PKNMNGSIGPRGEASKHYGEMLTAKT--GLPVIYWDERLSTVAAERILLSADVSRKKRKQ 119
Query: 143 ILDKFAAVGILQEYLDN 159
++DK AAV ILQ YLD+
Sbjct: 120 VIDKMAAVVILQGYLDS 136
>gi|404214839|ref|YP_006669034.1| putative endonuclease involved in recombination [Gordonia sp. KTR9]
gi|403645638|gb|AFR48878.1| putative endonuclease involved in recombination [Gordonia sp. KTR9]
Length = 153
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 71/138 (51%), Gaps = 2/138 (1%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV 80
RGR LG+DVG +G+++ DP +A+P+ + R D + + +L++E+ G +V
Sbjct: 15 RGRLLGIDVGSVRIGVAVCDPDGILATPVETVRRTPTGADDL-DRIAALVAEYEAVGVVV 73
Query: 81 GYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
G P + A A + D AT +++ + + +E FT+ + L+
Sbjct: 74 GLPKTLKNTAGAAAETARAFGDRLAT-RIDPVAVHWHDERFTTVTAQQALHASGRTVKSS 132
Query: 141 KTILDKFAAVGILQEYLD 158
+ ++D+ AAV ILQ +LD
Sbjct: 133 RAVIDQAAAVAILQGWLD 150
>gi|420241702|ref|ZP_14745811.1| RNAse H-fold protein YqgF [Rhizobium sp. CF080]
gi|398069889|gb|EJL61217.1| RNAse H-fold protein YqgF [Rhizobium sp. CF080]
Length = 162
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 67/135 (49%), Gaps = 6/135 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+G K +GL++SD + ASP V+ R K T D AE + + + GF++G P N
Sbjct: 21 GLDLGTKTIGLAMSDLGRRFASPRPVIKRVKFTKD--AEVLLAFAEKEKVAGFVIGLPTN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
+A VQ + F+ +S L + YW+E ++ E L +D+ + +
Sbjct: 79 MDGSAGPRVQATRAFVRSMSEKTAL---PFVYWDERLSTVAAERALLEMDVSRAKRAERI 135
Query: 145 DKFAAVGILQEYLDN 159
D AA ILQ LD
Sbjct: 136 DSAAASFILQGALDR 150
>gi|323490024|ref|ZP_08095245.1| Holliday junction resolvase-like protein [Planococcus donghaensis
MPA1U2]
gi|323396320|gb|EGA89145.1| Holliday junction resolvase-like protein [Planococcus donghaensis
MPA1U2]
Length = 138
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 2/136 (1%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K +G++ISDP A + + + + E LI ++ + +VGY
Sbjct: 2 RIIGLDVGSKTIGVAISDPMGWTAQGIETIKINEAIEEFGMERLGELIKQYEVTEAVVGY 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N + + L K+ + W+E T+ E +L D+ K
Sbjct: 62 PKNMNNSIGPRAEASEKFAAL--LKEAYSIPVVLWDERLTTSAAEKMLISADVSRKNRKK 119
Query: 143 ILDKFAAVGILQEYLD 158
++DK AAV ILQ YLD
Sbjct: 120 VIDKMAAVMILQGYLD 135
>gi|120403626|ref|YP_953455.1| Holliday junction resolvase YqgF [Mycobacterium vanbaalenii PYR-1]
gi|119956444|gb|ABM13449.1| Holliday junction resolvase YqgF [Mycobacterium vanbaalenii PYR-1]
Length = 175
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 75/149 (50%), Gaps = 4/149 (2%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV 80
RGR LG+DVG +G+++SDP +A+P+ + R K + +L+ E+ + +V
Sbjct: 25 RGRRLGVDVGTVRIGVAVSDPDAILATPVETVPRDKRGTKHVRR-LAALVDEYQVVEVVV 83
Query: 81 GYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
G P A + Q + ++ A ++ + +E FT+ + L +
Sbjct: 84 GLPRTLADRAGSSAQDATEVAEVLA-GRIAPVPVRLADERFTTVTAQRALREAGVRARGQ 142
Query: 141 KTILDKFAAVGILQEYLDNANRKVNLKAN 169
++++D+ AAVGILQ +LD R+ L A+
Sbjct: 143 RSVIDQAAAVGILQNWLD--QRRAALPAH 169
>gi|392988840|ref|YP_006487433.1| Holliday junction resolvase-like protein [Enterococcus hirae ATCC
9790]
gi|392336260|gb|AFM70542.1| Holliday junction resolvase-like protein [Enterococcus hirae ATCC
9790]
Length = 143
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 75/148 (50%), Gaps = 13/148 (8%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDF-----RSLISEFNLEG 77
R +GLDVG K VG+++SDP A + ++ ID AE+F + L+ ++ ++
Sbjct: 2 RVMGLDVGSKTVGIAVSDPFGWTAQGVEII-----RIDEEAEEFGFDRLKELVDQYEVDR 56
Query: 78 FIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLH 136
F+VG P N + + + K+L + Y +E T+ E +L+ +
Sbjct: 57 FVVGLPKNMNNTIGPRAESSMAYGE--KIKELFSLPVEYQDERLTTVQAERMLVEQANTS 114
Query: 137 PVEYKTILDKFAAVGILQEYLDNANRKV 164
+ K ++DK AAV ILQ YLD + +K+
Sbjct: 115 RAKRKKVIDKLAAVMILQNYLDGSGKKL 142
>gi|259418877|ref|ZP_05742794.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B]
gi|259345099|gb|EEW56953.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B]
Length = 157
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 6/136 (4%)
Query: 24 FLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYP 83
+GLD G+K +G+++SD +A+PL + RKK T+D + +IS ++ G I+G P
Sbjct: 19 LVGLDFGEKTIGVAVSDRIGAVATPLETIRRKKFTLD--SNRLLEIISGRDINGIILGLP 76
Query: 84 FNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
N + Q + F +LS ++ D+ +W+E ++ E L D
Sbjct: 77 RNMDGSEGPRCQSTRAFARNLS---RVTDLPIGFWDERLSTVAAERALLEADTSRKRRAE 133
Query: 143 ILDKFAAVGILQEYLD 158
++D AA ILQ LD
Sbjct: 134 VIDHVAASYILQGALD 149
>gi|418966157|ref|ZP_13517906.1| RNAse H domain protein, YqgF family [Streptococcus constellatus
subsp. constellatus SK53]
gi|383340811|gb|EID19099.1| RNAse H domain protein, YqgF family [Streptococcus constellatus
subsp. constellatus SK53]
Length = 139
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ + + E LI E+ ++ F+VG
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPINEEQEEFGFERLTELIQEYKVDKFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + V+ + ++L + Y +E T+ E +L+ D+ + K
Sbjct: 62 PKNMNNTSGPRVEASQAYG--TKIEQLFHLPVEYQDERLTTVAAERMLIEQADVSRKKRK 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 120 KVIDKLAAQLILQNYLD 136
>gi|389694786|ref|ZP_10182880.1| RNAse H-fold protein YqgF [Microvirga sp. WSM3557]
gi|388588172|gb|EIM28465.1| RNAse H-fold protein YqgF [Microvirga sp. WSM3557]
Length = 186
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 6/143 (4%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV 80
R R +GLD+G K +GL++SD + +IA+PL + R K T D+ + L++ + + G +
Sbjct: 18 RARLMGLDLGTKTIGLALSDVERRIATPLETIKRVKFTPDV--GRIKDLVARYEVGGLVF 75
Query: 81 GYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
G P N Q + F+ ++ K L + +W+E ++ V L D +
Sbjct: 76 GLPLNMDGTEGPRSQATRAFVRNM---KPLLPLPVLFWDERMSTMVVTRTLLDADASRAK 132
Query: 140 YKTILDKFAAVGILQEYLDNANR 162
+DK AA ILQ LD R
Sbjct: 133 RADAVDKMAAAYILQGALDRYER 155
>gi|389815866|ref|ZP_10207114.1| Holliday junction resolvase-like protein [Planococcus antarcticus
DSM 14505]
gi|388465589|gb|EIM07905.1| Holliday junction resolvase-like protein [Planococcus antarcticus
DSM 14505]
Length = 138
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 2/136 (1%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K +G++ISDP A + + + + LI ++ + +VGY
Sbjct: 2 RIMGLDVGSKTIGVAISDPMGWTAQGIETVKINEAIEEFGMVRLGELIKQYEVTEAVVGY 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N + + DL K+ + W+E T+ E +L D+ K
Sbjct: 62 PKNMNNSIGPRAEASERFADL--LKEAYSIPVVLWDERLTTAAAEKMLISADVSRKNRKK 119
Query: 143 ILDKFAAVGILQEYLD 158
++DK AAV ILQ YLD
Sbjct: 120 VIDKMAAVMILQGYLD 135
>gi|303230717|ref|ZP_07317464.1| RNAse H domain protein, YqgF family [Veillonella atypica
ACS-049-V-Sch6]
gi|302514477|gb|EFL56472.1| RNAse H domain protein, YqgF family [Veillonella atypica
ACS-049-V-Sch6]
Length = 140
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 12/140 (8%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDF---RSLISEFNLEGFI 79
R + LDVG + +G++ SD A + + R + DF R LISE+ + +
Sbjct: 2 RIMALDVGSRTIGIACSDALLMTAQGIETIRRTS-----LENDFNRLRELISEYEVHELV 56
Query: 80 VGYPFNRQQNAAD-AVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
VG P N D A + + F++ + A + D+ +W+E ++ E L D+
Sbjct: 57 VGMPKNMNGTKGDRAEKTEEFVEKMKA---VIDLPVTFWDERLSTVMAERQLIAADVSRK 113
Query: 139 EYKTILDKFAAVGILQEYLD 158
+ K ++DK AAV ILQ YLD
Sbjct: 114 KRKGVIDKMAAVVILQGYLD 133
>gi|168186829|ref|ZP_02621464.1| conserved hypothetical protein [Clostridium botulinum C str.
Eklund]
gi|169295213|gb|EDS77346.1| conserved hypothetical protein [Clostridium botulinum C str.
Eklund]
Length = 135
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 70/138 (50%), Gaps = 6/138 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVGD+ +G+++SDP A ++ + RK D+ ++ + + E+ +E I G
Sbjct: 2 RILGLDVGDRTIGVAVSDPLGFTAQGVTTIHRKNVEEDI--DELKKICKEYAVELIISGL 59
Query: 83 PFNRQQNAAD-AVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + +V F D L KLE + W+E T+ + +L + K
Sbjct: 60 PKNMNGTVGEQGEKVIEFCDILKT--KLE-IPIKMWDERLTTVAAHKAMLEANLSRAKRK 116
Query: 142 TILDKFAAVGILQEYLDN 159
I+DK AA ILQ YLD+
Sbjct: 117 KIVDKMAATYILQGYLDS 134
>gi|410584336|ref|ZP_11321439.1| RNAse H-fold protein YqgF [Thermaerobacter subterraneus DSM 13965]
gi|410504271|gb|EKP93782.1| RNAse H-fold protein YqgF [Thermaerobacter subterraneus DSM 13965]
Length = 330
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 71/141 (50%), Gaps = 4/141 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R+LGLD+G + +G++ISDP+ +A PL+ L R+ + D+ L + EG +VG+
Sbjct: 2 RWLGLDLGSRVIGVAISDPEGILARPLASLPRQGDDRDIAR--VVELARQHGAEGIVVGW 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P R+ + + + + + + W+E ++ E +L DL K
Sbjct: 60 P--RRLDGRRGPEAEAAEAFAAGLQAAGVSRVTLWDERLSTVQAERVLIDADLSRRRRKA 117
Query: 143 ILDKFAAVGILQEYLDNANRK 163
I+D+ AA ILQ +L+ R+
Sbjct: 118 IIDRMAATVILQAFLEAQRRQ 138
>gi|403237599|ref|ZP_10916185.1| Holliday junction resolvase-like protein [Bacillus sp. 10403023]
Length = 138
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 67/149 (44%), Gaps = 22/149 (14%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K VG+++SD A + + + E +I E+ +E ++G
Sbjct: 2 RILGLDVGSKTVGVAVSDEMGWTAQGIETIKINEERQQFGLERLGEIIKEYEVESVVIGL 61
Query: 83 PFN----------RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNP 132
P N Q+ AD VQ K ++ W+E ++ E +L
Sbjct: 62 PKNMNGTIGPRGEASQHYADLVQEKF------------ELPIVLWDERLSTVAAERVLLS 109
Query: 133 LDLHPVEYKTILDKFAAVGILQEYLDNAN 161
D+ + K ++DK AAV ILQ YLD+ N
Sbjct: 110 ADVSRKKRKQVIDKMAAVMILQGYLDSKN 138
>gi|384218314|ref|YP_005609480.1| hypothetical protein BJ6T_46250 [Bradyrhizobium japonicum USDA 6]
gi|354957213|dbj|BAL09892.1| hypothetical protein BJ6T_46250 [Bradyrhizobium japonicum USDA 6]
Length = 159
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 76/149 (51%), Gaps = 9/149 (6%)
Query: 20 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFI 79
+RG +GLD+G K +G+++S+P ++A+ + + RK D A ++ +E GF+
Sbjct: 17 ERGGLVGLDLGTKTIGVAVSNPDRRLATGVETIQRKAFKQD--AARLLAIAAERKAVGFV 74
Query: 80 VGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
+G P N + Q + F +L+ L + W+E ++ VE L +D+
Sbjct: 75 LGLPINMDGSEGPRAQSTRAFARNLAG---LTALPIGLWDERLSTAAVERELIGMDVSRA 131
Query: 139 EYKTILDKFAAVGILQEYLDNANRKVNLK 167
+ ++D+ AA+ ILQ LD R NL+
Sbjct: 132 KRAEVIDEHAAIFILQGALD---RLANLR 157
>gi|354558118|ref|ZP_08977374.1| Holliday junction resolvase [Desulfitobacterium metallireducens DSM
15288]
gi|353548843|gb|EHC18287.1| Holliday junction resolvase [Desulfitobacterium metallireducens DSM
15288]
Length = 137
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 6/142 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLD G++ +G++ISD A + + R K ID +AE LI ++ + ++GY
Sbjct: 2 RIMGLDFGERTIGVAISDELLWTAQGIKTIRRSKAEIDELAE----LIDKYEVREIVLGY 57
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N Q+ +L ++ + W+E ++ + L D+ + K
Sbjct: 58 PKNMNGTLGPRAQLSEEFSEL--LQERFQLPVKLWDERLSTVAAQRSLIEADVSRAKRKK 115
Query: 143 ILDKFAAVGILQEYLDNANRKV 164
++DK AAV ILQ YLD+ R V
Sbjct: 116 VIDKMAAVFILQGYLDHRQRNV 137
>gi|410657049|ref|YP_006909420.1| Putative Holliday junction resolvase [Dehalobacter sp. DCA]
gi|410660086|ref|YP_006912457.1| Putative Holliday junction resolvase [Dehalobacter sp. CF]
gi|409019404|gb|AFV01435.1| Putative Holliday junction resolvase [Dehalobacter sp. DCA]
gi|409022442|gb|AFV04472.1| Putative Holliday junction resolvase [Dehalobacter sp. CF]
Length = 132
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 73/136 (53%), Gaps = 6/136 (4%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLD+G+K +G+++SDP A + V+ R + + E+ LI E+ ++ ++GYP
Sbjct: 1 MGLDLGEKTIGVAMSDPLGITAQGVEVIRRTRKEKE--REELARLIREYEVDEIVLGYPK 58
Query: 85 NRQQNAADAVQV-KLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143
N + ++ ++F ++L L W+E ++ G + L DL + K +
Sbjct: 59 NMNGTLGERAKLTEVFAEELREGYLL---PVKLWDERLSTIGAQRALLEADLSRAKRKKV 115
Query: 144 LDKFAAVGILQEYLDN 159
+DK AAV ILQ YL++
Sbjct: 116 IDKMAAVFILQGYLNS 131
>gi|56697209|ref|YP_167573.1| Holliday junction resolvase-like protein [Ruegeria pomeroyi DSS-3]
gi|62900907|sp|Q5LQY2.1|RUVX_SILPO RecName: Full=Putative Holliday junction resolvase
gi|56678946|gb|AAV95612.1| conserved hypothetical protein TIGR00250 [Ruegeria pomeroyi DSS-3]
Length = 154
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 6/134 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+GDK +G+++SD +A+PL + RKK +D A +++ + + G ++G P N
Sbjct: 21 GLDLGDKTIGVAVSDRMRGVATPLETIRRKKFGLD--ASALLAIVEQREIAGIVLGLPRN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
+ Q + F +LS +L ++ +W+E ++ E L D ++
Sbjct: 79 MDGSEGPRCQSTRAFARNLS---RLTEVAITFWDERLSTVAAEKALLEADTTRKRRSEVI 135
Query: 145 DKFAAVGILQEYLD 158
D AA ILQ LD
Sbjct: 136 DHVAAAYILQGALD 149
>gi|402834027|ref|ZP_10882634.1| RNAse H domain protein, YqgF family [Selenomonas sp. CM52]
gi|402279096|gb|EJU28139.1| RNAse H domain protein, YqgF family [Selenomonas sp. CM52]
Length = 149
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 66/138 (47%), Gaps = 5/138 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R L LDVGD+ +G++ SD A + + RK D + L+ + + FIVG
Sbjct: 4 RVLALDVGDRTIGVAASDALGLTAQGVETIRRKSWDKDFAR--LKELMEIYETDTFIVGL 61
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + V+ F L KK + + +W+E ++ E L D+ + +
Sbjct: 62 PKNMNGTQGERCDIVRDFAQRLQ--KKFKGSQVVFWDERLSTVAAERSLIAADVSRAKRR 119
Query: 142 TILDKFAAVGILQEYLDN 159
++DK AAV ILQ YLDN
Sbjct: 120 KVIDKMAAVFILQGYLDN 137
>gi|430745894|ref|YP_007205023.1| RNAse H-fold protein YqgF [Singulisphaera acidiphila DSM 18658]
gi|430017614|gb|AGA29328.1| RNAse H-fold protein YqgF [Singulisphaera acidiphila DSM 18658]
Length = 159
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 73/150 (48%), Gaps = 6/150 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD G K VG ++SDP+ IA+PL V R D A +++L+SE ++ ++G
Sbjct: 3 RILGLDFGTKRVGAAVSDPRRMIATPLEVHERTDLAQD--ARHYKNLVSEHEVDRIVIGL 60
Query: 83 PFNR-QQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P + + A + + F ++ L + Y++E +TS E L + + + K
Sbjct: 61 PLHTGGREGTSASKARTFGTWIANATGLPVL---YYDERYTSSEAEDALIAIGMKRHKRK 117
Query: 142 TILDKFAAVGILQEYLDNANRKVNLKANVL 171
D AA +LQ YLD + L A L
Sbjct: 118 GYRDMLAAQILLQNYLDAGCPETELPATPL 147
>gi|294501347|ref|YP_003565047.1| putative Holliday junction resolvase [Bacillus megaterium QM B1551]
gi|295706694|ref|YP_003599769.1| Holliday junction resolvase [Bacillus megaterium DSM 319]
gi|294351284|gb|ADE71613.1| putative Holliday junction resolvase [Bacillus megaterium QM B1551]
gi|294804353|gb|ADF41419.1| putative Holliday junction resolvase [Bacillus megaterium DSM 319]
Length = 138
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 4/138 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K +G+++SD A + + ++ + LI E+++E +VG
Sbjct: 2 RVLGLDVGTKTIGVAVSDEMGWTAQGIETIKIADEQMEQSYPRLQQLIDEYSVEKIVVGL 61
Query: 83 PFNRQQNAADAVQVKL-FIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + + F D++ +E M W+E ++ E +L D+ + K
Sbjct: 62 PKNMNGTIGPRGEACIEFADNVKEKLNIETM---MWDERLSTMAAERVLLSADVSRKKRK 118
Query: 142 TILDKFAAVGILQEYLDN 159
++DK AAV ILQ YLD+
Sbjct: 119 KVIDKMAAVMILQGYLDS 136
>gi|299535708|ref|ZP_07049029.1| putative Holliday junction resolvase [Lysinibacillus fusiformis
ZC1]
gi|424739090|ref|ZP_18167512.1| putative Holliday junction resolvase [Lysinibacillus fusiformis
ZB2]
gi|298728908|gb|EFI69462.1| putative Holliday junction resolvase [Lysinibacillus fusiformis
ZC1]
gi|422946955|gb|EKU41357.1| putative Holliday junction resolvase [Lysinibacillus fusiformis
ZB2]
Length = 138
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 73/148 (49%), Gaps = 20/148 (13%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPL-SVLLRKKNT---IDLMAEDFRSLISEFNLEGF 78
R +GLDVG K VG+++SD A + +V + + N ID +AE L+ E+ + F
Sbjct: 2 RIMGLDVGSKTVGVAVSDALGWTAQGIETVKIDEANGEFGIDRIAE----LVKEYTITEF 57
Query: 79 IVGYPFNRQQNAADAVQV-----KLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPL 133
+VG+P N + KL + S KL W+E T+ E +L
Sbjct: 58 VVGFPKNMNNTVGPRGEASENYKKLLEEHFSLPVKL-------WDERLTTMAAERMLIEA 110
Query: 134 DLHPVEYKTILDKFAAVGILQEYLDNAN 161
D+ + K ++DK AAV ILQ YLD+ N
Sbjct: 111 DVSRKKRKQVIDKMAAVMILQGYLDSKN 138
>gi|166031235|ref|ZP_02234064.1| hypothetical protein DORFOR_00922 [Dorea formicigenerans ATCC
27755]
gi|346307126|ref|ZP_08849270.1| Holliday junction resolvase [Dorea formicigenerans 4_6_53AFAA]
gi|166029082|gb|EDR47839.1| RNAse H domain protein, YqgF family [Dorea formicigenerans ATCC
27755]
gi|345906926|gb|EGX76646.1| Holliday junction resolvase [Dorea formicigenerans 4_6_53AFAA]
Length = 144
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 3/140 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRK-KNTIDLMAEDFRSLISEFNLEGFIVG 81
R +GLD G + VG+++SDP A + + RK +N + L++E+ +E ++G
Sbjct: 2 RIMGLDYGSRTVGVAVSDPLGITAQAVETICRKDENKLRKTCARIEELVAEYEVEKIVLG 61
Query: 82 YPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P + + D + + ++ + ++ W+E T+ E L + + K
Sbjct: 62 LPKHMNNDIGDRAEKSMQFGEMIGRRT--GLEVVMWDERLTTVSAERTLIENKVRREDRK 119
Query: 142 TILDKFAAVGILQEYLDNAN 161
+D+ AAV ILQ YLD+A+
Sbjct: 120 KYIDQIAAVFILQGYLDSAH 139
>gi|320547640|ref|ZP_08041925.1| crossover junction endodeoxyribonuclease [Streptococcus equinus
ATCC 9812]
gi|320447715|gb|EFW88473.1| crossover junction endodeoxyribonuclease [Streptococcus equinus
ATCC 9812]
Length = 139
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 5/138 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A + ++ + + E L+ ++N++ F+VG
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGVEIIQIDEEAGEFGFERLGELVKQYNVDKFVVGL 61
Query: 83 PFNRQQNAADAVQV-KLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEY 140
P N V+ K + D + K+L ++ Y +E T+ E +L+ D+ +
Sbjct: 62 PKNMNNTEGPRVEASKAYGDQI---KELFNIPVDYQDERLTTVQAERMLVEQADVSRGKR 118
Query: 141 KTILDKFAAVGILQEYLD 158
K ++DK AA ILQ YLD
Sbjct: 119 KKVIDKLAAQLILQNYLD 136
>gi|339010649|ref|ZP_08643219.1| putative holliday junction resolvase [Brevibacillus laterosporus
LMG 15441]
gi|421875423|ref|ZP_16307015.1| putative Holliday junction resolvase [Brevibacillus laterosporus
GI-9]
gi|338772804|gb|EGP32337.1| putative holliday junction resolvase [Brevibacillus laterosporus
LMG 15441]
gi|372455631|emb|CCF16564.1| putative Holliday junction resolvase [Brevibacillus laterosporus
GI-9]
Length = 137
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 6/141 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG+K +G++ISD A + + R D I+ + ++ F+VG
Sbjct: 2 RILGLDVGEKTIGVAISDELGWTAQGIETIRRSSKENDF--GRIEEWIATYQVQAFVVGL 59
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + + F + L K+ + W+E T+ E +L D+ + K
Sbjct: 60 PKNMNGTIGPKGEYCQAFAEQL---KERTGLPVHLWDERLTTMAAEKMLISADVSRQKRK 116
Query: 142 TILDKFAAVGILQEYLDNANR 162
++DK AAV ILQ YLD +R
Sbjct: 117 KVIDKMAAVLILQGYLDANSR 137
>gi|456011602|gb|EMF45339.1| Putative Holliday junction resolvase YggF [Planococcus
halocryophilus Or1]
Length = 139
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 2/136 (1%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K +G++ISDP A + + + + + LI ++ + +VGY
Sbjct: 3 RIIGLDVGSKTIGVAISDPMGWTAQGIETIKINEAIEEFGMQRLGELIKQYEVTEAVVGY 62
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N + + L K+ ++ W+E T+ E +L D+ K
Sbjct: 63 PKNMNNSIGPRAEASERFAAL--LKEAYNIPVVLWDERLTTSAAEKMLISADVSRKNRKK 120
Query: 143 ILDKFAAVGILQEYLD 158
++DK AAV ILQ YLD
Sbjct: 121 VIDKMAAVMILQGYLD 136
>gi|148543770|ref|YP_001271140.1| Holliday junction resolvase-like protein [Lactobacillus reuteri DSM
20016]
gi|184153176|ref|YP_001841517.1| hypothetical protein LAR_0521 [Lactobacillus reuteri JCM 1112]
gi|194468335|ref|ZP_03074321.1| Holliday junction resolvase YqgF [Lactobacillus reuteri 100-23]
gi|227363250|ref|ZP_03847382.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
MM2-3]
gi|227544202|ref|ZP_03974251.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
CF48-3A]
gi|325682142|ref|ZP_08161660.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
MM4-1A]
gi|338204118|ref|YP_004650263.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
SD2112]
gi|423335903|ref|ZP_17313654.1| conserved hypothetical protein [Lactobacillus reuteri ATCC 53608]
gi|167012733|sp|A5VIX9.1|RUVX_LACRD RecName: Full=Putative Holliday junction resolvase
gi|226731626|sp|B2G6F5.1|RUVX_LACRJ RecName: Full=Putative Holliday junction resolvase
gi|148530804|gb|ABQ82803.1| Holliday junction resolvase YqgF [Lactobacillus reuteri DSM 20016]
gi|154705538|gb|ABS84195.1| holliday junction resolvase-like protein [Lactobacillus reuteri]
gi|183224520|dbj|BAG25037.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112]
gi|194453188|gb|EDX42086.1| Holliday junction resolvase YqgF [Lactobacillus reuteri 100-23]
gi|227071706|gb|EEI09997.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
MM2-3]
gi|227185838|gb|EEI65909.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
CF48-3A]
gi|324978786|gb|EGC15735.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
MM4-1A]
gi|336449358|gb|AEI57973.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
SD2112]
gi|337729106|emb|CCC04229.1| conserved hypothetical protein [Lactobacillus reuteri ATCC 53608]
Length = 147
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 75/148 (50%), Gaps = 10/148 (6%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVL-LRKKNT---IDLMAEDFRSLISEFNLEGF 78
R +GLDVG K VG+S+SDP A + ++ + ++N ID +AE L+ + + GF
Sbjct: 2 RLMGLDVGSKTVGISVSDPLGWTAQAVEIIPIDEENEIFGIDRVAE----LVKKEQVAGF 57
Query: 79 IVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTS-KGVELLLNPLDLHP 137
++G P N V+ L ++ D+ + +E T+ + +L+ D+
Sbjct: 58 VIGLPKNMNNTEGPRVEASQHYGKL-LQQRFPDIPIDFQDERLTTVEAHRMLVEEADISR 116
Query: 138 VEYKTILDKFAAVGILQEYLDNANRKVN 165
+ K ++D+ AA ILQ YLD R VN
Sbjct: 117 AKQKKVIDEVAATFILQSYLDRHGRLVN 144
>gi|384044813|ref|YP_005492830.1| RNase H-like ribonuclease [Bacillus megaterium WSH-002]
gi|345442504|gb|AEN87521.1| RNase H-like ribonuclease [Bacillus megaterium WSH-002]
Length = 138
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 4/138 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K +G+++SD A + + ++ + LI E+++E +VG
Sbjct: 2 RVLGLDVGTKTIGVAVSDEMGWTAQGIETIKIADEQMEQSYPRLQELIDEYSVEKIVVGL 61
Query: 83 PFNRQQNAADAVQVKL-FIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + + F D++ +E M W+E ++ E +L D+ + K
Sbjct: 62 PKNMNGTIGPRGEACIEFADNVKEKLNIETM---MWDERLSTMAAERVLLSADVSRKKRK 118
Query: 142 TILDKFAAVGILQEYLDN 159
++DK AAV ILQ YLD+
Sbjct: 119 KVIDKMAAVMILQGYLDS 136
>gi|297584728|ref|YP_003700508.1| Holliday junction resolvase YqgF [Bacillus selenitireducens MLS10]
gi|297143185|gb|ADH99942.1| Holliday junction resolvase YqgF [Bacillus selenitireducens MLS10]
Length = 138
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 66/138 (47%), Gaps = 4/138 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
+ +GLDVG K +G+++SDP A + RKK + + L+ E E +VG
Sbjct: 2 KIIGLDVGTKTIGIAVSDPFGWTAQGVETHRRKKGKENEDVQRIVDLVEEEGAEQIVVGL 61
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + + + F + L K+ + W+E T+ E L D+ + K
Sbjct: 62 PKNMNGTIGPSGELCQAFAESL---KEATGLPVILWDERLTTAAAEKTLISADVSRKKRK 118
Query: 142 TILDKFAAVGILQEYLDN 159
++DK AAV ILQ YLD+
Sbjct: 119 NVIDKMAAVFILQGYLDS 136
>gi|410459944|ref|ZP_11313632.1| putative Holliday junction resolvase [Bacillus azotoformans LMG
9581]
gi|409927782|gb|EKN64908.1| putative Holliday junction resolvase [Bacillus azotoformans LMG
9581]
Length = 138
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 2/137 (1%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K +G+++SD A + + + D + ++ I+E+N E +VG+
Sbjct: 2 RVIGLDVGTKTIGVAVSDELGWTAQGIETIKIDADQNDYGLDRIKTFINEYNPEKIVVGF 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N + L +L KK ++ W+E ++ E +L D+ + K
Sbjct: 62 PKNMNGTVGPRGEACLEFAEL--LKKKFHIEVVLWDERLSTMAAERILLSGDVSRKKRKK 119
Query: 143 ILDKFAAVGILQEYLDN 159
++DK AAV ILQ YLD+
Sbjct: 120 VIDKMAAVMILQGYLDS 136
>gi|146277916|ref|YP_001168075.1| Holliday junction resolvase-like protein [Rhodobacter sphaeroides
ATCC 17025]
gi|167012753|sp|A4WTQ6.1|RUVX_RHOS5 RecName: Full=Putative Holliday junction resolvase
gi|145556157|gb|ABP70770.1| Holliday junction resolvase YqgF [Rhodobacter sphaeroides ATCC
17025]
Length = 160
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 6/141 (4%)
Query: 20 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFI 79
+ G +GLD+G K +G++++D +IA+PL + R K T D A R++ +E L G +
Sbjct: 15 RSGALIGLDLGTKTIGVAVTDGLRRIATPLLTIRRTKFTED--AARLRAITAERGLVGIV 72
Query: 80 VGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
+G P N + Q + F +LS ++ + YW+E ++ E L D
Sbjct: 73 LGLPRNMDGSEGPRAQSTRAFARNLS---QVLPLPIGYWDERLSTVAAERALIEADTSRK 129
Query: 139 EYKTILDKFAAVGILQEYLDN 159
++D AA ILQ LD
Sbjct: 130 RRAEVIDHVAAGYILQGVLDR 150
>gi|357419711|ref|YP_004932703.1| Holliday junction resolvase YqgF [Thermovirga lienii DSM 17291]
gi|355397177|gb|AER66606.1| Holliday junction resolvase YqgF [Thermovirga lienii DSM 17291]
Length = 140
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 76/141 (53%), Gaps = 7/141 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
RFLGLD+G K +G+S+SDP A ++VL T D MAE L++ + + +VG
Sbjct: 3 RFLGLDIGTKRIGVSVSDPLGSFAQGVAVL---DATRDWMAE-LDKLVAHYKVGVIVVGM 58
Query: 83 PFNRQQNAA-DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P+ + +A+++K + L ++ D+ W+E FT+ E + D+ + +
Sbjct: 59 PYRTDASVGPEALKIKDVVSSLR--QRYPDLDVVLWDERFTTTIAEKAMIEADVKRKKRR 116
Query: 142 TILDKFAAVGILQEYLDNANR 162
+D AA +LQ++L++ ++
Sbjct: 117 QNIDMVAASIMLQDFLEHYSK 137
>gi|417936933|ref|ZP_12580239.1| RNAse H domain protein, YqgF family [Streptococcus infantis X]
gi|419843679|ref|ZP_14366987.1| RNAse H domain protein, YqgF family [Streptococcus infantis ATCC
700779]
gi|343399375|gb|EGV11897.1| RNAse H domain protein, YqgF family [Streptococcus infantis X]
gi|385702576|gb|EIG39718.1| RNAse H domain protein, YqgF family [Streptococcus infantis ATCC
700779]
Length = 139
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 70/140 (50%), Gaps = 9/140 (6%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ ++ + E + L+ + +E F+VG
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGEFGFERLKELVDTYKVERFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTSKGVE-LLLNPLDLHPV 138
P N + V+ + KLE+ + Y +E T+ E +L+ D+
Sbjct: 62 PKNMNNTSGPRVEA-----SQAYGAKLEELFGLPVEYQDERLTTVAAERMLIEQADISRN 116
Query: 139 EYKTILDKFAAVGILQEYLD 158
+ K ++DK AA ILQ YLD
Sbjct: 117 KRKKVIDKLAAQLILQNYLD 136
>gi|433545191|ref|ZP_20501551.1| Holliday junction resolvase [Brevibacillus agri BAB-2500]
gi|432183580|gb|ELK41121.1| Holliday junction resolvase [Brevibacillus agri BAB-2500]
Length = 134
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 4/138 (2%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLDVGDK +G+++SD A + + R+ DL + L++ + + F+VG P
Sbjct: 1 MGLDVGDKTIGIAVSDELGWTAQGVETIKRQSKEKDL--ARIQELVAHYQVGAFVVGLPK 58
Query: 85 NRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
N ++ L ++ + W+E T+ E +L D+ + KT++
Sbjct: 59 NMNGTIGPRAEMCQAFGKL--LEERTSLPVHMWDERLTTMAAERMLISADVSRQKRKTVI 116
Query: 145 DKFAAVGILQEYLDNANR 162
DK AA ILQ +LD +R
Sbjct: 117 DKMAATLILQGFLDAKSR 134
>gi|373456281|ref|ZP_09548048.1| Holliday junction resolvase [Caldithrix abyssi DSM 13497]
gi|371717945|gb|EHO39716.1| Holliday junction resolvase [Caldithrix abyssi DSM 13497]
Length = 137
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 74/141 (52%), Gaps = 10/141 (7%)
Query: 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 81
G+ LGLD+G K VG+++SD +A PL + K L E+ ++LISE ++ +VG
Sbjct: 2 GKILGLDIGSKRVGVAVSDELAFLAHPLKTITWK--GYKLFVEEIQNLISEQSVTKIVVG 59
Query: 82 YPFNRQQNAADAVQVKLFIDDLSATKKLE---DMKYAYWNEGFTSKGVELLLNPLDLHPV 138
P+ + N + + + L KKL + +E ++K +L+ + P
Sbjct: 60 VPYTLEGNVSKKTE-----EVLRLIKKLRKNVSIPIIEVDESLSTKRAHDVLHRVGKKPS 114
Query: 139 EYKTILDKFAAVGILQEYLDN 159
+ + +D+ AAV ILQ+YLD+
Sbjct: 115 KKRQTIDQIAAVFILQDYLDS 135
>gi|343924307|ref|ZP_08763858.1| putative Holliday junction resolvase [Gordonia alkanivorans NBRC
16433]
gi|343765741|dbj|GAA10784.1| putative Holliday junction resolvase [Gordonia alkanivorans NBRC
16433]
Length = 149
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 74/141 (52%), Gaps = 6/141 (4%)
Query: 20 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKN-TIDLMAEDFRSLISEFNLEGF 78
+RGR LG+DVG +G+++ DP +A+P+ + R + T DL + L++E+ G
Sbjct: 10 QRGRRLGIDVGSVRIGVAVCDPDGILATPVETVRRTPSATTDL--DRIVELVAEYGAIGV 67
Query: 79 IVGYPFNRQQNAADAVQV-KLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHP 137
++G P + A + + F D L+ +++ + + +E FT+ + L+
Sbjct: 68 VIGLPKTLKNTTGVAAETARAFGDRLA--ERIAPAEVHWQDERFTTVTAQQALHASGRTV 125
Query: 138 VEYKTILDKFAAVGILQEYLD 158
+ ++D+ AAV ILQ +LD
Sbjct: 126 KSSRGVIDQAAAVAILQGWLD 146
>gi|331269728|ref|YP_004396220.1| Holliday junction resolvase YqgF [Clostridium botulinum BKT015925]
gi|329126278|gb|AEB76223.1| Holliday junction resolvase YqgF [Clostridium botulinum BKT015925]
Length = 135
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 4/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD+G+K +G+++SDP A ++ + RK+ D+ E+ + E+ +E I G
Sbjct: 2 RILGLDIGNKTIGVAVSDPLGFTAQGITTIHRKELEKDI--EEVGKICHEYKIELIISGL 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N N Q + ++ K D+ W+E T+ + +L + K
Sbjct: 60 PKN--MNGTIGEQGEKVLEFCDVLKDKLDIPIKMWDERLTTVAAHRAMLEANLSRAKRKK 117
Query: 143 ILDKFAAVGILQEYLDN 159
I+DK AA ILQ YLD+
Sbjct: 118 IVDKIAATYILQGYLDS 134
>gi|403384214|ref|ZP_10926271.1| Holliday junction resolvase [Kurthia sp. JC30]
Length = 139
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 66/139 (47%), Gaps = 8/139 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISD A + + + + E L+ E+ + F+VG+
Sbjct: 2 RAMGLDVGTKTVGVAISDALGWTAQGIETIKIDEENGEFGLERVAELVKEYKVTEFVVGF 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLE---DMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
P N + ++ +KLE + W+E T+ E LL D+ +
Sbjct: 62 PKNMNNTVGPRGEA-----SIAYKEKLEAQFALPVTLWDERLTTMAAERLLIEADVRRKD 116
Query: 140 YKTILDKFAAVGILQEYLD 158
K ++DK AAV ILQ YLD
Sbjct: 117 RKKVIDKMAAVMILQGYLD 135
>gi|339640085|ref|ZP_08661529.1| RNAse H domain protein, YqgF family [Streptococcus sp. oral taxon
056 str. F0418]
gi|339453354|gb|EGP65969.1| RNAse H domain protein, YqgF family [Streptococcus sp. oral taxon
056 str. F0418]
Length = 139
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ + E +L+SE+ ++ F++G
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIQIDEEQGQFGFERLGALVSEYKVDKFVIGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + V+ + A +L + Y +E T+ E +L+ D+ + K
Sbjct: 62 PKNMNNTSGPRVEASQAYGEKVA--ELFGLPVDYQDERLTTVAAERMLIEQADVSRSKRK 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 120 KVIDKLAAQLILQNYLD 136
>gi|399924175|ref|ZP_10781533.1| Holliday junction resolvase YqgF [Peptoniphilus rhinitidis 1-13]
Length = 138
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 69/140 (49%), Gaps = 6/140 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
+ LGLDVGD ++G++ISDP A PL+ + R+ N I + +I E N+E +VG
Sbjct: 3 KVLGLDVGDVWIGVAISDPLMITAQPLTTIKRESNKI--AYDKIHDIIKENNVEKVVVGL 60
Query: 83 PFNRQQN-AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + +V F + L K++ Y +E T+ E +L + K
Sbjct: 61 PKNMNNTIGPQSEKVIKFAEKLKNKYKVD---IEYVDERMTTLMAEKVLIEGSVRRENRK 117
Query: 142 TILDKFAAVGILQEYLDNAN 161
+DK AA ILQ YLD N
Sbjct: 118 KYIDKIAATYILQSYLDRIN 137
>gi|326803430|ref|YP_004321248.1| RNAse H domain-containing protein [Aerococcus urinae
ACS-120-V-Col10a]
gi|326651353|gb|AEA01536.1| RNAse H domain protein, YqgF family [Aerococcus urinae
ACS-120-V-Col10a]
Length = 140
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 3/141 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A + + + R LI ++ +E ++G
Sbjct: 2 RIMGLDVGSKTVGVAISDPFGWTAQGIETIKIDEEAGKFGFSRLRQLIEDYQVEKIVIGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + D++ +L D+ Y +E T++ E L+ D+ + K
Sbjct: 62 PKNMNNTEGPRAEASRHYGDMAI--ELFDLPVFYQDERLTTQQSERFLIEAADVSRKKRK 119
Query: 142 TILDKFAAVGILQEYLDNANR 162
++DK AAV ILQ YLD+ +
Sbjct: 120 KVIDKLAAVLILQNYLDSHSH 140
>gi|406832299|ref|ZP_11091893.1| Holliday junction resolvase [Schlesneria paludicola DSM 18645]
Length = 159
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 71/146 (48%), Gaps = 8/146 (5%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV 80
G LGLD G K +G+++S+ + P+ + +T L R L +++ + G ++
Sbjct: 14 HGALLGLDYGTKRMGVAVSNSDQTVGVPVETWQVRDSTHTL--RHLRELFADYRVVGLVL 71
Query: 81 GYPF--NRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
G P N ++ A A V+ F D + A K M Y +E ++S ELL+ P
Sbjct: 72 GLPIRTNGEEGTA-AAAVREFGDWIQAQTK---MPLVYIDERYSSAEAELLIWQRGESPS 127
Query: 139 EYKTILDKFAAVGILQEYLDNANRKV 164
+ K LD AA ILQ YLD+ R +
Sbjct: 128 KRKQPLDSLAAKIILQSYLDDPTRAI 153
>gi|424762381|ref|ZP_18189890.1| RNAse H domain protein, YqgF family [Enterococcus faecalis
TX1337RF]
gi|431757267|ref|ZP_19545898.1| YqgF family RNAse H domain-containing protein [Enterococcus faecium
E3083]
gi|402425001|gb|EJV57161.1| RNAse H domain protein, YqgF family [Enterococcus faecium TX1337RF]
gi|430619556|gb|ELB56383.1| YqgF family RNAse H domain-containing protein [Enterococcus faecium
E3083]
Length = 143
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 74/143 (51%), Gaps = 3/143 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG+++SDP A + ++ + + + + L++++ ++ F+VG
Sbjct: 2 RVMGLDVGSKTVGVAVSDPFGWTAQGVEIIRINEAEEEFGFDRLKELVAQYEVDRFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + + L + K+L + Y +E T+ E +L+ + + K
Sbjct: 62 PKNMNNSIGPRAEASLLYGE--KIKELFSLPVDYQDERLTTVQAERMLVEQANTSRAKRK 119
Query: 142 TILDKFAAVGILQEYLDNANRKV 164
++DK AAV ILQ YLD + +++
Sbjct: 120 KVIDKLAAVMILQNYLDGSGKQL 142
>gi|222153870|ref|YP_002563047.1| Holliday junction resolvase [Streptococcus uberis 0140J]
gi|254767528|sp|B9DW62.1|RUVX_STRU0 RecName: Full=Putative Holliday junction resolvase
gi|222114683|emb|CAR43762.1| putative Holliday junction resolvase [Streptococcus uberis 0140J]
Length = 139
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 70/140 (50%), Gaps = 9/140 (6%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ + E L+ ++ ++ F+VG
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIDEEKNSFGFERLSELVKQYQVDKFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKY---AYWNEGFTSKGVE-LLLNPLDLHPV 138
P N + V+ + KK+ED+ + Y +E T+ E +L+ D+
Sbjct: 62 PKNMNNTSGPRVEAS-----QAYGKKIEDLFHIPVVYQDERLTTVQAERMLIEQADISRG 116
Query: 139 EYKTILDKFAAVGILQEYLD 158
+ K ++DK AA ILQ YLD
Sbjct: 117 KRKKVIDKLAAQLILQNYLD 136
>gi|295109588|emb|CBL23541.1| conserved hypothetical protein TIGR00250 [Ruminococcus obeum
A2-162]
Length = 140
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 66/138 (47%), Gaps = 3/138 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKK-NTIDLMAEDFRSLISEFNLEGFIVG 81
R LGLD G K VG+++SDP A + + RK+ N + LI+E+ +E ++G
Sbjct: 2 RILGLDYGSKTVGVAVSDPLGLTAQKVETIWRKQENKLRQTLARIEELIAEYEVEKIVLG 61
Query: 82 YPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
+P N + + L ++ KK ++ W+E T+ + L + K
Sbjct: 62 FPKNMNNTVGERAEKALEFGEM--LKKRTGLEVIMWDERLTTVEADRTLIEAGVRRENRK 119
Query: 142 TILDKFAAVGILQEYLDN 159
LD AAV ILQ YLD+
Sbjct: 120 QYLDGIAAVFILQGYLDS 137
>gi|254780976|ref|YP_003065389.1| Holliday junction resolvase YqgF [Candidatus Liberibacter asiaticus
str. psy62]
gi|254040653|gb|ACT57449.1| Holliday junction resolvase YqgF [Candidatus Liberibacter asiaticus
str. psy62]
Length = 160
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 70/136 (51%), Gaps = 9/136 (6%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
+D+G K +GL+ISDP + A P L+RKK T A + S I+ N+ FI+G P N
Sbjct: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT--QTALELLSFITTENIAAFIIGLPLN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI- 143
+ V + F+ ++ K + + +W+E T+ + +L +D++ K I
Sbjct: 79 MNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVSAQQIL--IDMNVSRKKRIQ 134
Query: 144 -LDKFAAVGILQEYLD 158
+D AA ILQE LD
Sbjct: 135 KVDSIAAALILQEVLD 150
>gi|210622572|ref|ZP_03293254.1| hypothetical protein CLOHIR_01202 [Clostridium hiranonis DSM 13275]
gi|210154155|gb|EEA85161.1| hypothetical protein CLOHIR_01202 [Clostridium hiranonis DSM 13275]
Length = 140
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 68/140 (48%), Gaps = 10/140 (7%)
Query: 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLR--KKNTIDLMAEDFRSLISEFNLEGFI 79
GR +GLD+GDK +G+++SD A + + R KKN I E+ + +I E + +
Sbjct: 4 GRIMGLDIGDKTIGVAVSDLMGMTAQGIKTIKRTSKKNDI----EEIKQIIKEKQVNLIV 59
Query: 80 VGYPFNRQQNAA-DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
G P N +V+ F + + LE +W+E T+ E L D+
Sbjct: 60 SGLPKNMNGTVGPQGEKVQKFCELIKEETGLE---IEFWDERLTTVAAEKTLITADVSRK 116
Query: 139 EYKTILDKFAAVGILQEYLD 158
+ K ++D AAV ILQ YLD
Sbjct: 117 KRKNVIDMMAAVLILQGYLD 136
>gi|409390033|ref|ZP_11241804.1| putative Holliday junction resolvase [Gordonia rubripertincta NBRC
101908]
gi|403199860|dbj|GAB85038.1| putative Holliday junction resolvase [Gordonia rubripertincta NBRC
101908]
Length = 149
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 74/141 (52%), Gaps = 6/141 (4%)
Query: 20 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKN-TIDLMAEDFRSLISEFNLEGF 78
+RGR LG+DVG +G+++ DP +A+P+ + R + T DL + L++E+ G
Sbjct: 10 QRGRRLGIDVGSVRIGVAVCDPDGILATPVETVRRTPSATTDL--DRIVELVAEYEAIGV 67
Query: 79 IVGYPFNRQQNAADAVQV-KLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHP 137
++G P + A + + F D L+ +++ + + +E FT+ + L+
Sbjct: 68 VIGLPKTLKNTTGVAAETARAFGDRLA--ERIAPAEVHWQDERFTTVTAQQALHASGRTV 125
Query: 138 VEYKTILDKFAAVGILQEYLD 158
+ ++D+ AAV ILQ +LD
Sbjct: 126 KSSRGVIDQAAAVAILQGWLD 146
>gi|343526492|ref|ZP_08763442.1| RNAse H domain protein, YqgF family [Streptococcus constellatus
subsp. pharyngis SK1060 = CCUG 46377]
gi|423069752|ref|ZP_17058537.1| Holliday junction resolvase [Streptococcus intermedius F0395]
gi|343394443|gb|EGV06991.1| RNAse H domain protein, YqgF family [Streptococcus constellatus
subsp. pharyngis SK1060 = CCUG 46377]
gi|355363626|gb|EHG11362.1| Holliday junction resolvase [Streptococcus intermedius F0395]
Length = 139
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ + + E L+ E+ ++ F+VG
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPINEEQEEFGFERLTELVQEYKVDKFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + V+ + ++L + Y +E T+ E +L+ D+ + K
Sbjct: 62 PKNMNNTSGPRVEASQAYG--TKIEQLFHLPVEYQDERLTTVAAERMLIEQADVSRKKRK 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 120 KVIDKLAAQLILQNYLD 136
>gi|227498473|ref|ZP_03928619.1| conserved hypothetical protein [Acidaminococcus sp. D21]
gi|226903931|gb|EEH89849.1| conserved hypothetical protein [Acidaminococcus sp. D21]
Length = 138
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 3/140 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLD+G + +G+++SD IA + + R DL L+ + + F++GY
Sbjct: 2 RIMGLDLGTRTIGVAVSDEMGLIARGIETIRRSGTKNDLAR--LHELVQKEEVGAFVLGY 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N + + L T+ D K W+E ++ E +L DL + K
Sbjct: 60 PKNMNGTIGERGKASEAFSKLLQTE-FPDAKITLWDERLSTVAAEKVLIDADLTRKKRKK 118
Query: 143 ILDKFAAVGILQEYLDNANR 162
++D AAV ILQ YLD+ R
Sbjct: 119 VIDMMAAVVILQNYLDSLRR 138
>gi|258515480|ref|YP_003191702.1| Holliday junction resolvase YqgF [Desulfotomaculum acetoxidans DSM
771]
gi|257779185|gb|ACV63079.1| Holliday junction resolvase YqgF [Desulfotomaculum acetoxidans DSM
771]
Length = 139
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 3/136 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R + LD+G+K +G+++SDP A L ++ RK + R +I ++ +E +VG
Sbjct: 2 RIMCLDLGEKTIGIALSDPFGWTAQGLEIINRKGQPKQEL-NRLREIIKQYEVEKVVVGL 60
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N N Q + +D + K+ + W+E ++ E +L D+ + K
Sbjct: 61 PKN--MNGTTGPQAEKALDFIEYLKRKLGLVVEAWDERLSTVAAERILLSADISRGKRKK 118
Query: 143 ILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 119 VIDKMAAAVILQGYLD 134
>gi|335028874|ref|ZP_08522390.1| RNAse H domain protein, YqgF family [Streptococcus infantis SK1076]
gi|334270241|gb|EGL88647.1| RNAse H domain protein, YqgF family [Streptococcus infantis SK1076]
Length = 139
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ + + E + L+ + +E F+VG
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGEFGFERLKELVDTYKVERFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTSKGVE-LLLNPLDLHPV 138
P N + V+ + KLE+ + Y +E T+ E +L+ D+
Sbjct: 62 PKNMNNTSGPRVEA-----SQAYGAKLEELFGLPVEYQDERLTTVAAERMLIEQADISRN 116
Query: 139 EYKTILDKFAAVGILQEYLD 158
+ K ++DK AA ILQ YLD
Sbjct: 117 KRKKVIDKLAAQLILQNYLD 136
>gi|108799314|ref|YP_639511.1| Holliday junction resolvase-like protein [Mycobacterium sp. MCS]
gi|119868430|ref|YP_938382.1| Holliday junction resolvase-like protein [Mycobacterium sp. KMS]
gi|122977019|sp|Q1B9H9.1|RUVX_MYCSS RecName: Full=Putative Holliday junction resolvase
gi|167012737|sp|A1UFI4.1|RUVX_MYCSK RecName: Full=Putative Holliday junction resolvase
gi|108769733|gb|ABG08455.1| Holliday junction resolvase YqgF [Mycobacterium sp. MCS]
gi|119694519|gb|ABL91592.1| Holliday junction resolvase YqgF [Mycobacterium sp. KMS]
Length = 169
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 12/152 (7%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV 80
RGR +G+DVG VG++ SDP +A+P+ + R+K++ D L++E +V
Sbjct: 19 RGRRIGIDVGSVRVGVATSDPDGVLATPVETVRREKSS-DRHVRRLAQLVTELEAVEVVV 77
Query: 81 GYP---FNRQQNAA-DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH 136
G P +R AA DA+ V + +++ + +E T+ + L +
Sbjct: 78 GLPRTLADRTGPAAHDAIDVAEAL-----ARRIAPVPVRMADERLTTVSAQRSLREAGVR 132
Query: 137 PVEYKTILDKFAAVGILQEYLDNANRKVNLKA 168
+ ++D+ AAVGILQ +LD R+ L A
Sbjct: 133 AKGQRAMIDQVAAVGILQSWLD--QRRAALAA 162
>gi|414156440|ref|ZP_11412742.1| RNAse H-fold protein YqgF [Streptococcus sp. F0442]
gi|410870087|gb|EKS18046.1| RNAse H-fold protein YqgF [Streptococcus sp. F0442]
Length = 139
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG+++SDP A L ++ ++ + E L++++ ++ F+VG
Sbjct: 2 RIMGLDVGSKTVGVAVSDPLGFTAQGLEIIQIDEDKKEFGLERLSELVAQYKVDRFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + V+ + A K + Y +E T+ E +L+ D+ + K
Sbjct: 62 PKNMNNTSGPRVEASQVYGAMIAEKF--GLPVDYQDERLTTVAAERMLIEQADVSRSKRK 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 120 KVIDKLAAQLILQNYLD 136
>gi|424910172|ref|ZP_18333549.1| RNAse H-fold protein YqgF [Rhizobium leguminosarum bv. viciae USDA
2370]
gi|392846203|gb|EJA98725.1| RNAse H-fold protein YqgF [Rhizobium leguminosarum bv. viciae USDA
2370]
Length = 159
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 6/135 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+G K +GL++SD + A+P V+ R K T+D AE + + + FI+G P N
Sbjct: 21 GLDLGTKTIGLAMSDLSRRFATPRPVIKRVKFTLD--AEVLMAFAEKEKVAAFIIGLPMN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
+A VQ + F+ + L + YW+E ++ E L +D+ + +
Sbjct: 79 MDGSAGPRVQATRAFVRTMGEKTAL---PFVYWDERLSTVAAERALLEMDVSRAKRAERI 135
Query: 145 DKFAAVGILQEYLDN 159
D AA ILQ LD
Sbjct: 136 DSAAASFILQGALDR 150
>gi|326201373|ref|ZP_08191245.1| Holliday junction resolvase YqgF [Clostridium papyrosolvens DSM
2782]
gi|325988941|gb|EGD49765.1| Holliday junction resolvase YqgF [Clostridium papyrosolvens DSM
2782]
Length = 142
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 5/137 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LG+D GD +G++ISDP A L +++ K ++ +I E+ + ++GY
Sbjct: 2 RILGIDYGDSRIGVAISDPMGWTAQGLE-MIKSKESLKKAVLRLSEIIKEYGVTDIVIGY 60
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + + FI +S + +K W+E T+ +N L + + K
Sbjct: 61 PINMNGTKGPRTERTEEFIKKISDFGEFNIIK---WDERLTTVSAHRTMNELGIKASKKK 117
Query: 142 TILDKFAAVGILQEYLD 158
I+D +AV ILQ YLD
Sbjct: 118 DIVDTMSAVLILQGYLD 134
>gi|238018987|ref|ZP_04599413.1| hypothetical protein VEIDISOL_00849 [Veillonella dispar ATCC 17748]
gi|313892893|ref|ZP_07826470.1| RNAse H domain protein, YqgF family [Veillonella sp. oral taxon 158
str. F0412]
gi|237864471|gb|EEP65761.1| hypothetical protein VEIDISOL_00849 [Veillonella dispar ATCC 17748]
gi|313442246|gb|EFR60661.1| RNAse H domain protein, YqgF family [Veillonella sp. oral taxon 158
str. F0412]
Length = 139
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 73/140 (52%), Gaps = 12/140 (8%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDF---RSLISEFNLEGFI 79
R + LDVG + +G++ SD A + + R + +DF + LI+E+ + +
Sbjct: 2 RIMSLDVGSRTIGIACSDALLMTAQGIETIRRTS-----LEKDFNRLQELIAEYEVHELV 56
Query: 80 VGYPFNRQQNAAD-AVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
VG P N + A + + F++ + K++ D+ +YW+E ++ E L D+
Sbjct: 57 VGMPKNMNGTKGERAEKTEEFVEKM---KEVIDLPVSYWDERLSTVMAERQLIAADVSRK 113
Query: 139 EYKTILDKFAAVGILQEYLD 158
+ K+++DK AAV ILQ YLD
Sbjct: 114 KRKSVIDKMAAVVILQGYLD 133
>gi|253681805|ref|ZP_04862602.1| conserved hypothetical protein [Clostridium botulinum D str. 1873]
gi|416352942|ref|ZP_11681424.1| Holliday junction resolvase-like protein [Clostridium botulinum C
str. Stockholm]
gi|253561517|gb|EES90969.1| conserved hypothetical protein [Clostridium botulinum D str. 1873]
gi|338195673|gb|EGO87925.1| Holliday junction resolvase-like protein [Clostridium botulinum C
str. Stockholm]
Length = 135
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 69/137 (50%), Gaps = 4/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG+K +G+++SDP A ++ + RK+ D+ ++ + E+ +E I G
Sbjct: 2 RILGLDVGNKTIGVAVSDPLGFTAQGITTVHRKELEEDI--QEIDKICHEYKIELIISGL 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N N Q + ++ K+ D+ W+E T+ + +L + K
Sbjct: 60 PKN--MNGTIGEQGEKVLEFCDVLKEKLDIPIKMWDERLTTVAAHKAMLEANLSRAKRKK 117
Query: 143 ILDKFAAVGILQEYLDN 159
I+DK AA ILQ YLD+
Sbjct: 118 IVDKIAATYILQGYLDS 134
>gi|164688537|ref|ZP_02212565.1| hypothetical protein CLOBAR_02182 [Clostridium bartlettii DSM
16795]
gi|164602950|gb|EDQ96415.1| RNAse H domain protein, YqgF family [Clostridium bartlettii DSM
16795]
Length = 141
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 71/141 (50%), Gaps = 4/141 (2%)
Query: 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 81
GR +GLD+GDK +G+++SD A + + R+ D+ E+ +++I E + + G
Sbjct: 4 GRIMGLDIGDKTIGVAVSDIMGITAQGVKTIRRESKKKDI--EELKNIIKERQVNKIVSG 61
Query: 82 YPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N N Q + + K+ ++ +W+E T+ E L D+ + K
Sbjct: 62 LPKN--MNGTLGPQGEKVLKLCELIKEETGLEIDFWDERLTTVAAERSLIEGDVSRKKRK 119
Query: 142 TILDKFAAVGILQEYLDNANR 162
++D AAV ILQ YLD+ ++
Sbjct: 120 KVIDMLAAVIILQGYLDSKSK 140
>gi|395765784|ref|ZP_10446375.1| RNAse H-fold protein YqgF [Bartonella sp. DB5-6]
gi|395410789|gb|EJF77336.1| RNAse H-fold protein YqgF [Bartonella sp. DB5-6]
Length = 159
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 6/139 (4%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV 80
R GLD+G K VG+++SD ++P VL RKK T+D A + N+ I+
Sbjct: 16 RQTIAGLDLGTKTVGIAVSDTGLTFSNPRPVLQRKKFTLD--AHTLIQIFDRENVGAVII 73
Query: 81 GYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
G P N ++ VQ + F+ ++ A ++ + +W+E ++ E L +D+ +
Sbjct: 74 GLPLNMNGSSGPRVQATRTFVSNMEA---YTEIPFVFWDERLSTIAAERFLLEMDVSRAK 130
Query: 140 YKTILDKFAAVGILQEYLD 158
T +D AA ILQ L+
Sbjct: 131 RATRIDSAAAAFILQGALN 149
>gi|355680080|ref|ZP_09061577.1| Holliday junction resolvase [Clostridium citroniae WAL-17108]
gi|354811909|gb|EHE96532.1| Holliday junction resolvase [Clostridium citroniae WAL-17108]
Length = 148
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 5/139 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRK-KNTIDLMAEDFRSLISEFNLEGFIVG 81
R +GLD G K VG+++ DP A + + RK +N + +LI ++ +E ++G
Sbjct: 2 RIMGLDFGSKTVGVAVCDPLGITAQTVETITRKDENKLRQTLARIEALIGQYEIERIVLG 61
Query: 82 YPFNRQQNAAD-AVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
YP N + AV+ + F + A ++ + W+E T+ E +L +
Sbjct: 62 YPKNMNNTLGERAVKTEAFKE---ALERRTGLPVVLWDERLTTVAAERVLIESGVRREHR 118
Query: 141 KTILDKFAAVGILQEYLDN 159
K +D+ AA ILQ YLD+
Sbjct: 119 KESVDQIAAAMILQGYLDS 137
>gi|392375108|ref|YP_003206941.1| Holliday junction resolvase [Candidatus Methylomirabilis oxyfera]
gi|258592801|emb|CBE69110.1| putative Holliday junction resolvase [Candidatus Methylomirabilis
oxyfera]
Length = 144
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 70/144 (48%), Gaps = 10/144 (6%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R+LG+D G K +G++ISD A PL L + +T + R ++ ++ + +VG
Sbjct: 3 RYLGIDFGTKRIGVAISDELGLTAQPLPTL--EPSTDEAAVRAIREIMDQYGILDVVVGL 60
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTSKGVELLLNPLDLHPVE 139
P N + + L +LE+ +K W+E TS E LL DL +
Sbjct: 61 PKNMNGTLGPSAERALAF-----AGQLEEGGSVKVTMWDERLTSLAAERLLIEADLSRAK 115
Query: 140 YKTILDKFAAVGILQEYLDNANRK 163
K +D+ AAV ILQ +LD +R+
Sbjct: 116 RKRRVDQMAAVLILQGFLDRRHRQ 139
>gi|83590476|ref|YP_430485.1| Holliday junction resolvase YqgF [Moorella thermoacetica ATCC
39073]
gi|146325578|sp|Q2RHZ7.1|RUVX_MOOTA RecName: Full=Putative Holliday junction resolvase
gi|83573390|gb|ABC19942.1| Holliday junction resolvase YqgF [Moorella thermoacetica ATCC
39073]
Length = 140
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K +G+++SDP A L+ + R+ DL A + L+ + +E +VG
Sbjct: 2 RIMGLDVGTKTIGVALSDPLGWTAQGLTTIRRRNLAADLAA--LKELVRRYGVEELVVGL 59
Query: 83 PFNRQQN-AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + A V+ F L A L +++E T+ +L DL +
Sbjct: 60 PRNMNGSLGPQAEAVRAFARHLQAEVGL---PVHFFDERLTTVAAGRVLLEADLSRRRRR 116
Query: 142 TILDKFAAVGILQEYLD 158
++D+ AA ILQ YLD
Sbjct: 117 QVIDQVAATYILQGYLD 133
>gi|337282886|ref|YP_004622357.1| crossover junction endodeoxyribonuclease [Streptococcus
parasanguinis ATCC 15912]
gi|387880481|ref|YP_006310784.1| Holliday junction resolvase-like protein [Streptococcus
parasanguinis FW213]
gi|419799237|ref|ZP_14324598.1| RNAse H domain protein, YqgF family [Streptococcus parasanguinis
F0449]
gi|335370479|gb|AEH56429.1| crossover junction endodeoxyribonuclease [Streptococcus
parasanguinis ATCC 15912]
gi|385698440|gb|EIG28801.1| RNAse H domain protein, YqgF family [Streptococcus parasanguinis
F0449]
gi|386793929|gb|AFJ26964.1| Holliday junction resolvase-like protein [Streptococcus
parasanguinis FW213]
Length = 139
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG+++SDP A L ++ ++ + E L++++ ++ F+VG
Sbjct: 2 RIMGLDVGSKTVGVAVSDPLGFTAQGLEIIQIDEDKKEFGLERLAELVAQYKVDRFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + V+ + A K + Y +E T+ E +L+ D+ + K
Sbjct: 62 PKNMNNTSGPRVEASQAYGTMIAEKF--GLPVDYQDERLTTVAAERMLIEQADISRSKRK 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 120 KVIDKLAAQLILQNYLD 136
>gi|392416228|ref|YP_006452833.1| RNAse H-fold protein YqgF [Mycobacterium chubuense NBB4]
gi|390616004|gb|AFM17154.1| RNAse H-fold protein YqgF [Mycobacterium chubuense NBB4]
Length = 175
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 71/139 (51%), Gaps = 2/139 (1%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV 80
RGR LG+DVG +G++ISDP +A+P+ + R + T + +L+ E+ +V
Sbjct: 25 RGRRLGVDVGTVRIGVAISDPDAILATPVETVARDRRTEKHLRR-LVALVDEYQAVEVVV 83
Query: 81 GYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
G P A + + + + D A +++ + +E FT+ + L +
Sbjct: 84 GLPRTLADRAGASARDAVEVADRLA-ERISPVPVRLTDERFTTLTAQRSLREAGVRARGQ 142
Query: 141 KTILDKFAAVGILQEYLDN 159
++++D+ AAVGILQ +LD
Sbjct: 143 RSVIDQAAAVGILQNWLDQ 161
>gi|312866891|ref|ZP_07727104.1| RNAse H domain protein, YqgF family [Streptococcus parasanguinis
F0405]
gi|311097674|gb|EFQ55905.1| RNAse H domain protein, YqgF family [Streptococcus parasanguinis
F0405]
Length = 139
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG+++SDP A L ++ ++ + E L++++ ++ F+VG
Sbjct: 2 RIMGLDVGSKTVGVAVSDPLGFTAQGLEIIQIDEDKREFGLERLAELVAQYKVDRFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + V+ + A K + Y +E T+ E +L+ D+ + K
Sbjct: 62 PKNMNNTSGPRVEASQAYGTMIAEKF--GLPVDYQDERLTTVAAERMLIEQADISRSKRK 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 120 KVIDKLAAQLILQNYLD 136
>gi|429760149|ref|ZP_19292639.1| RNAse H domain protein, YqgF family [Veillonella atypica KON]
gi|429178554|gb|EKY19832.1| RNAse H domain protein, YqgF family [Veillonella atypica KON]
Length = 140
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 12/140 (8%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDF---RSLISEFNLEGFI 79
R + LDVG + +G++ SD A + + R + DF R LISE+ + +
Sbjct: 2 RIMALDVGSRTIGIACSDALLMTAQGIETIRRTS-----LENDFNRLRELISEYEVHELV 56
Query: 80 VGYPFNRQQNAAD-AVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
VG P N + A + + F++ + A + D+ +W+E ++ E L D+
Sbjct: 57 VGMPKNMNGTKGERAEKTEEFVEKMKA---VIDLPVTFWDERLSTVMAERQLIAADVSRK 113
Query: 139 EYKTILDKFAAVGILQEYLD 158
+ K I+DK AAV ILQ YLD
Sbjct: 114 KRKGIIDKMAAVVILQGYLD 133
>gi|319935504|ref|ZP_08009939.1| Holliday junction resolvase [Coprobacillus sp. 29_1]
gi|319809535|gb|EFW05952.1| Holliday junction resolvase [Coprobacillus sp. 29_1]
Length = 140
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 2/140 (1%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
+ LGLD+G + G++ISDP IA + K N A ++++ E N+ ++G
Sbjct: 3 KILGLDLGSRTCGIAISDPLGIIAQGVETYRFKDNHYKSAAYHIKTIVQENNIHTIVLGL 62
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P + + + Q+ ID +K+ D++ +E T+ +E L D+ + K
Sbjct: 63 PKHMNGDLGERAQIS--IDFKERLEKMMDVEVILVDERLTTVMMENQLIFADVSRKKRKE 120
Query: 143 ILDKFAAVGILQEYLDNANR 162
++DK AAV ILQ YLD+ R
Sbjct: 121 VIDKLAAVQILQGYLDSQRR 140
>gi|225871407|ref|YP_002747354.1| Holliday junction resolvase [Streptococcus equi subsp. equi 4047]
gi|254767526|sp|C0MAR3.1|RUVX_STRE4 RecName: Full=Putative Holliday junction resolvase
gi|225700811|emb|CAW95508.1| putative Holliday junction resolvase [Streptococcus equi subsp.
equi 4047]
Length = 139
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ ++ D + L+ ++ ++ F++G
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIRINEDKQDFGFDRLAELVKQYQVDRFVIGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + V+ D ++L + +Y +E T+ E +L+ D+ + K
Sbjct: 62 PKNMNNTSGPRVEASKAYGD--KIEELFHIPVSYQDERLTTVEAERMLIEQADISRGKRK 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 120 KVIDKLAAQLILQNYLD 136
>gi|312143794|ref|YP_003995240.1| Holliday junction resolvase YqgF [Halanaerobium hydrogeniformans]
gi|311904445|gb|ADQ14886.1| Holliday junction resolvase YqgF [Halanaerobium hydrogeniformans]
Length = 136
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 72/137 (52%), Gaps = 6/137 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LG+D G+K VG+++SD A PL+ L++ +L+ E R I ++++E IVG
Sbjct: 2 RILGIDYGNKRVGIAVSDALGWTAQPLTT-LKQHGHQELLVE-LRQYIEKYDVEKIIVGM 59
Query: 83 PFNRQQNAADAVQV-KLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P+N + ++ + FI+ L K ++ +E T+ E +L DL K
Sbjct: 60 PYNMDGSRGKRAEITQAFINFL---KNNLEIPVEIQDERLTTSQAENILLEADLSRSRRK 116
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 117 DVIDKLAAALILQSYLD 133
>gi|290581344|ref|YP_003485736.1| hypothetical protein SmuNN2025_1818 [Streptococcus mutans NN2025]
gi|449969197|ref|ZP_21813072.1| hypothetical protein SMU41_01340 [Streptococcus mutans 2VS1]
gi|450030651|ref|ZP_21833342.1| hypothetical protein SMU61_06871 [Streptococcus mutans G123]
gi|450034411|ref|ZP_21834366.1| hypothetical protein SMU62_02149 [Streptococcus mutans M21]
gi|450058922|ref|ZP_21843285.1| hypothetical protein SMU69_07935 [Streptococcus mutans NLML4]
gi|450068250|ref|ZP_21847061.1| hypothetical protein SMU72_07684 [Streptococcus mutans NLML9]
gi|450092555|ref|ZP_21856060.1| hypothetical protein SMU78_03449 [Streptococcus mutans W6]
gi|450149187|ref|ZP_21876025.1| hypothetical protein SMU92_05261 [Streptococcus mutans 14D]
gi|450164000|ref|ZP_21881071.1| hypothetical protein SMU95_01375 [Streptococcus mutans B]
gi|254998243|dbj|BAH88844.1| hypothetical protein [Streptococcus mutans NN2025]
gi|449174317|gb|EMB76811.1| hypothetical protein SMU41_01340 [Streptococcus mutans 2VS1]
gi|449192603|gb|EMB94018.1| hypothetical protein SMU61_06871 [Streptococcus mutans G123]
gi|449196514|gb|EMB97779.1| hypothetical protein SMU62_02149 [Streptococcus mutans M21]
gi|449203577|gb|EMC04434.1| hypothetical protein SMU69_07935 [Streptococcus mutans NLML4]
gi|449207245|gb|EMC07923.1| hypothetical protein SMU72_07684 [Streptococcus mutans NLML9]
gi|449218108|gb|EMC18130.1| hypothetical protein SMU78_03449 [Streptococcus mutans W6]
gi|449234910|gb|EMC33896.1| hypothetical protein SMU92_05261 [Streptococcus mutans 14D]
gi|449242457|gb|EMC41043.1| hypothetical protein SMU95_01375 [Streptococcus mutans B]
Length = 139
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG+++SDP A L ++ + + E L+ ++ +E F+VG
Sbjct: 2 RIIGLDVGSKTVGVAVSDPLGFTAQGLEIIPINEAKGEFGFERLADLVKDYKVEKFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + V+ K+L D+ Y +E T+ E +L+ D+ + K
Sbjct: 62 PKNMNNTSGPRVEASQAYG--KKIKELFDLPVEYQDERLTTVQAERMLVEQADVSRGKRK 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 120 KVIDKLAAQLILQNYLD 136
>gi|374611210|ref|ZP_09683998.1| Holliday junction resolvase YqgF [Mycobacterium tusciae JS617]
gi|373549720|gb|EHP76383.1| Holliday junction resolvase YqgF [Mycobacterium tusciae JS617]
Length = 180
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 75/151 (49%), Gaps = 6/151 (3%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLR-KKNTIDLMAEDFRSLISEFNLEGFI 79
RGR LG+D G +G+++SDP +A+P+ + R ++ D +L++E+ +
Sbjct: 24 RGRRLGIDAGSVRIGVAVSDPDGILATPVETVARERRKGSDKHVRRLAALVNEYEAVEAV 83
Query: 80 VGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
VG P Q+ + A D L+A ++ + +E T+ + L +
Sbjct: 84 VGLPRTLADQSGSAAADAIGLADQLAA--RIAPVPVRLADERLTTVAAQRSLREAGIRAK 141
Query: 139 EYKTILDKFAAVGILQEYLDNANRKVNLKAN 169
++I+D+ AAVGILQ +LD R+ L A+
Sbjct: 142 GQRSIIDQAAAVGILQNWLD--QRRAVLAAH 170
>gi|357237937|ref|ZP_09125276.1| RNAse H domain protein, YqgF family [Streptococcus ictaluri 707-05]
gi|356753441|gb|EHI70556.1| RNAse H domain protein, YqgF family [Streptococcus ictaluri 707-05]
Length = 139
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ ++ D E L+ ++ ++ F+VG
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIITIDEDKKDFGFERLTELVKQYQVDKFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + V+ ++L + Y +E T+ E +L+ D+ + K
Sbjct: 62 PKNMNNTSGPRVEASQAYG--QKVQELFQLPVYYQDERLTTVEAERMLIEQADVSRGKRK 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 120 KVIDKLAAQLILQNYLD 136
>gi|146317727|ref|YP_001197439.1| Holliday junction resolvase-like protein [Streptococcus suis
05ZYH33]
gi|146319916|ref|YP_001199627.1| Holliday junction resolvase-like protein [Streptococcus suis
98HAH33]
gi|223934259|ref|ZP_03626188.1| Holliday junction resolvase YqgF [Streptococcus suis 89/1591]
gi|253750983|ref|YP_003024124.1| Holliday junction resolvase-like protein [Streptococcus suis SC84]
gi|253752883|ref|YP_003026023.1| Holliday junction resolvase-like protein [Streptococcus suis P1/7]
gi|253754708|ref|YP_003027848.1| Holliday junction resolvase-like protein [Streptococcus suis BM407]
gi|386577064|ref|YP_006073469.1| Resolvase, holliday junction-type, YqgF-like protein [Streptococcus
suis GZ1]
gi|403060764|ref|YP_006648980.1| Holliday junction resolvase-like protein [Streptococcus suis S735]
gi|167016513|sp|A4VYN8.1|RUVX_STRS2 RecName: Full=Putative Holliday junction resolvase
gi|167016515|sp|A4VSF0.1|RUVX_STRSY RecName: Full=Putative Holliday junction resolvase
gi|145688533|gb|ABP89039.1| Unknown protein [Streptococcus suis 05ZYH33]
gi|145690722|gb|ABP91227.1| unknown protein [Streptococcus suis 98HAH33]
gi|223897073|gb|EEF63505.1| Holliday junction resolvase YqgF [Streptococcus suis 89/1591]
gi|251815272|emb|CAZ50837.1| putative Holliday junction resolvase [Streptococcus suis SC84]
gi|251817172|emb|CAZ54893.1| putative Holliday junction resolvase [Streptococcus suis BM407]
gi|251819128|emb|CAR44214.1| putative Holliday junction resolvase [Streptococcus suis P1/7]
gi|292557526|gb|ADE30527.1| Resolvase, holliday junction-type, YqgF-like protein [Streptococcus
suis GZ1]
gi|402808090|gb|AFQ99581.1| Holliday junction resolvase-like protein [Streptococcus suis S735]
Length = 139
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 3/139 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ + + E L+ ++ ++ F+VG
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIDEEKGEFGLERLTELVEQYKVDKFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + V+ DL + + Y +E T+ E +L+ D+ + K
Sbjct: 62 PKNMNNTSGPRVEASQAYGDLLTERY--KLPVDYQDERLTTVAAERMLIEQADISRGKRK 119
Query: 142 TILDKFAAVGILQEYLDNA 160
++DK AA ILQ YLD
Sbjct: 120 KVIDKLAAQLILQNYLDRT 138
>gi|395243122|ref|ZP_10420109.1| Putative Holliday junction resolvase [Lactobacillus hominis CRBIP
24.179]
gi|394484352|emb|CCI81117.1| Putative Holliday junction resolvase [Lactobacillus hominis CRBIP
24.179]
Length = 142
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 77/143 (53%), Gaps = 6/143 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K VG+++SDP A + + ++ + + + L+ E+ ++GF++G
Sbjct: 2 RLLGLDVGSKTVGVAVSDPLGITAQEVETIPIDESKFNFGIKRIKRLVREYEIDGFVLGL 61
Query: 83 PFNRQQNAADAV-QVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHP-VE 139
P N + +V + K + + L TKK + Y +E T+K + LL+ +H +
Sbjct: 62 PKNMDGSDGPSVARSKSYGERL--TKKFS-LPVYYNDERLTTKQADRLLIQEAGIHDRTK 118
Query: 140 YKTILDKFAAVGILQEYLDNANR 162
K ++D+ AAV ILQ YLD +
Sbjct: 119 RKKVIDQMAAVLILQNYLDKTRK 141
>gi|375091758|ref|ZP_09738046.1| RNAse H-fold protein YqgF [Helcococcus kunzii ATCC 51366]
gi|374562645|gb|EHR33972.1| RNAse H-fold protein YqgF [Helcococcus kunzii ATCC 51366]
Length = 136
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 71/137 (51%), Gaps = 6/137 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R++GLD+G K +G++ISDP A+ L + RK D+ E + +I E + I+G
Sbjct: 3 RYIGLDLGTKTIGVAISDPFLMFANGLVTIKRKNVRSDI--EQIKKIIEENEITKVIIGM 60
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P+N + + Q V F+D L KK D + Y +E T+ E +L ++ K
Sbjct: 61 PYNMDGSKGPSAQRVMSFVDLL---KKEIDNEIIYEDERLTTVSAERVLIESNVGRNRRK 117
Query: 142 TILDKFAAVGILQEYLD 158
+DK AA ILQ YLD
Sbjct: 118 DHIDKIAAALILQSYLD 134
>gi|126725473|ref|ZP_01741315.1| hypothetical protein RB2150_04693 [Rhodobacterales bacterium
HTCC2150]
gi|126704677|gb|EBA03768.1| hypothetical protein RB2150_04693 [Rhodobacterales bacterium
HTCC2150]
Length = 156
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 6/135 (4%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
LD GDK +G++ SD IA+PL + R K T D AE L + + GF++G P
Sbjct: 21 FALDFGDKTIGIATSDIFRNIATPLETIRRTKFTAD--AERLLELAKQRQVTGFVLGLPR 78
Query: 85 NRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143
N + Q + F +L ++L ++ A+W+E ++ E L D + I
Sbjct: 79 NMDGSEGVRCQKTRAFARNL---ERLTEINIAFWDERLSTVAAERALIEADTSRAKRAQI 135
Query: 144 LDKFAAVGILQEYLD 158
+D AA ILQ LD
Sbjct: 136 IDHVAAGYILQGALD 150
>gi|312862410|ref|ZP_07722653.1| RNAse H domain protein, YqgF family [Streptococcus vestibularis
F0396]
gi|322515847|ref|ZP_08068791.1| crossover junction endodeoxyribonuclease [Streptococcus
vestibularis ATCC 49124]
gi|311102053|gb|EFQ60253.1| RNAse H domain protein, YqgF family [Streptococcus vestibularis
F0396]
gi|322125733|gb|EFX97055.1| crossover junction endodeoxyribonuclease [Streptococcus
vestibularis ATCC 49124]
Length = 139
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 74/143 (51%), Gaps = 15/143 (10%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDF-----RSLISEFNLEG 77
R +GLDVG K VG++ISDP A + ++ ID AE+F L+ E+ +E
Sbjct: 2 RVMGLDVGSKTVGVAISDPLGFTAQGVEII-----KIDEEAEEFGFDRLGELVKEYKVEK 56
Query: 78 FIVGYPFNRQQNAADAVQV-KLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDL 135
F+VG P N V+ K + D + K++ ++ Y +E T+ E +L+ D+
Sbjct: 57 FVVGLPKNMNNTEGPRVEASKAYGDKI---KEIFEIPVDYQDERLTTVQAERMLVEQADV 113
Query: 136 HPVEYKTILDKFAAVGILQEYLD 158
+ K ++DK AA ILQ YLD
Sbjct: 114 SRGKRKKVIDKLAAQLILQNYLD 136
>gi|402836969|ref|ZP_10885500.1| RNAse H domain protein, YqgF family [Mogibacterium sp. CM50]
gi|402269985|gb|EJU19254.1| RNAse H domain protein, YqgF family [Mogibacterium sp. CM50]
Length = 148
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 78/148 (52%), Gaps = 16/148 (10%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLR---KKNTIDLMAEDFRSLISEFNLEGFI 79
R +GLDVGDK +G+++SD + A ++ + R +K+T ++ L+ E+ + +
Sbjct: 2 RKIGLDVGDKTIGIAVSDLLDITAQGVTTIERVGIRKDTTKVLG-----LVREYECDTIV 56
Query: 80 VGYPFNRQQNAADAVQV------KLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPL 133
VG P + D++Q + +++ + L +K + +E FT+K E +L
Sbjct: 57 VGLPLG--LDGTDSIQTEKVREFRTMLENKLRSSGLAHVKLVWQDERFTTKLAENILIAG 114
Query: 134 DLHPVEYKTILDKFAAVGILQEYLDNAN 161
D+ + K ++DK AA+ ILQ YLD +
Sbjct: 115 DVKRGDRKKVIDKQAAIIILQSYLDRVS 142
>gi|395789808|ref|ZP_10469316.1| RNAse H-fold protein YqgF [Bartonella taylorii 8TBB]
gi|395428030|gb|EJF94112.1| RNAse H-fold protein YqgF [Bartonella taylorii 8TBB]
Length = 159
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 70/142 (49%), Gaps = 12/142 (8%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLE---G 77
R GLD+G K VG+++SD ++P VL RKK T+D A LI FN E
Sbjct: 16 RQTIAGLDLGTKTVGIAVSDMGLTFSNPRPVLQRKKFTLDAHA-----LIQIFNRENVGA 70
Query: 78 FIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH 136
I+G P N ++ Q K F+ ++ A ++ + +W+E ++ E L +D+
Sbjct: 71 VIIGLPLNMNGSSGPRAQATKTFVSNMEAHT---EIPFVFWDERLSTIAAERFLLEMDVS 127
Query: 137 PVEYKTILDKFAAVGILQEYLD 158
+ T +D AA ILQ L+
Sbjct: 128 RAKRATRIDSAAAAFILQGALN 149
>gi|167767372|ref|ZP_02439425.1| hypothetical protein CLOSS21_01891 [Clostridium sp. SS2/1]
gi|167711347|gb|EDS21926.1| RNAse H domain protein, YqgF family [Clostridium sp. SS2/1]
Length = 139
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 66/138 (47%), Gaps = 3/138 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRK-KNTIDLMAEDFRSLISEFNLEGFIVG 81
R LGLD G K VG+++SD + A PL + RK N + L+ E+N+E ++G
Sbjct: 3 RILGLDYGTKTVGVALSDELHITAQPLETITRKDANKLRKTYARIEELVKEYNVEKIVLG 62
Query: 82 YPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + + L D A + ++ W+E T+ E +L + K
Sbjct: 63 LPKNMNNTVGERGEDTLSFRD--ALVRRTGLEVILWDERLTTVASEKVLMESGVRRENRK 120
Query: 142 TILDKFAAVGILQEYLDN 159
++D+ AA ILQ YLD+
Sbjct: 121 KVIDQIAASMILQGYLDS 138
>gi|157151461|ref|YP_001451289.1| Holliday junction resolvase-like protein [Streptococcus gordonii
str. Challis substr. CH1]
gi|189046109|sp|A8AZS9.1|RUVX_STRGC RecName: Full=Putative Holliday junction resolvase
gi|157076255|gb|ABV10938.1| conserved hypothetical protein TIGR00250 [Streptococcus gordonii
str. Challis substr. CH1]
Length = 139
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ ++ + E L++E+ ++ F++G
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQEEFGFERLGELVAEYKVDKFVIGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + V+ + +L + Y +E T+ E +L+ D+ + K
Sbjct: 62 PKNMNNTSGPRVEASQAYG--AKVTELFGLPVEYQDERLTTVAAERMLIEQADVSRNKRK 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 120 KVIDKLAAQLILQNYLD 136
>gi|289550617|ref|YP_003471521.1| Holliday junction resolvase [Staphylococcus lugdunensis HKU09-01]
gi|315658112|ref|ZP_07910984.1| crossover junction endodeoxyribonuclease [Staphylococcus
lugdunensis M23590]
gi|385784245|ref|YP_005760418.1| hypothetical protein SLUG_13000 [Staphylococcus lugdunensis
N920143]
gi|418413921|ref|ZP_12987137.1| RNAse H-fold protein YqgF [Staphylococcus lugdunensis
ACS-027-V-Sch2]
gi|289180149|gb|ADC87394.1| Putative Holliday junction resolvase [Staphylococcus lugdunensis
HKU09-01]
gi|315496441|gb|EFU84764.1| crossover junction endodeoxyribonuclease [Staphylococcus
lugdunensis M23590]
gi|339894501|emb|CCB53780.1| conserved hypothetical protein [Staphylococcus lugdunensis N920143]
gi|410877559|gb|EKS25451.1| RNAse H-fold protein YqgF [Staphylococcus lugdunensis
ACS-027-V-Sch2]
Length = 142
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 1/137 (0%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
+ LGLDVG K VG++ISD A L L + + E ++I N++ ++G
Sbjct: 5 KILGLDVGSKTVGIAISDLMGWTAQGLDTLRINEEQEEYGIEQLTNIIKSNNVDTIVIGL 64
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N + + + +L + + DMK W+E ++ E L D+ + K
Sbjct: 65 PKNMNNSIGFRGEASIHYKEL-ILEAMPDMKVIMWDERLSTMAAERSLLEADVSRQKRKK 123
Query: 143 ILDKFAAVGILQEYLDN 159
++DK AAV ILQ YLD+
Sbjct: 124 VIDKMAAVFILQGYLDS 140
>gi|262283641|ref|ZP_06061406.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
gi|262260698|gb|EEY79399.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
Length = 139
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ ++ + E L++E+ ++ F++G
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQEEFGFERLGELVAEYKVDKFVIGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + V+ + +L + Y +E T+ E +L+ D+ + K
Sbjct: 62 PKNMNNTSGPRVEASRAYG--AKVTELFGLPVEYQDERLTTVAAERMLIEQADVSRNKRK 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 120 KVIDKLAAQLILQNYLD 136
>gi|376261929|ref|YP_005148649.1| RNAse H-fold protein YqgF [Clostridium sp. BNL1100]
gi|373945923|gb|AEY66844.1| RNAse H-fold protein YqgF [Clostridium sp. BNL1100]
Length = 142
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 5/137 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LG+D GD +G++ISDP A L +++ K+ + +I E+ + ++GY
Sbjct: 2 RILGIDYGDSRIGVAISDPMGWTAQGLE-MIKSKDGLKKAILRLSEIIKEYGVTDIVIGY 60
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + + FI +S + +K W+E T+ +N L + + K
Sbjct: 61 PINMNGTKGPRTERTEEFIKKISDLGQFNIIK---WDERLTTVSAHRTMNELGIKASKKK 117
Query: 142 TILDKFAAVGILQEYLD 158
I+D +AV ILQ YLD
Sbjct: 118 DIVDTMSAVLILQGYLD 134
>gi|269798239|ref|YP_003312139.1| Holliday junction resolvase YqgF [Veillonella parvula DSM 2008]
gi|282850477|ref|ZP_06259856.1| RNAse YqgF [Veillonella parvula ATCC 17745]
gi|417001177|ref|ZP_11941091.1| RNAse H domain protein, YqgF family [Veillonella parvula
ACS-068-V-Sch12]
gi|269094868|gb|ACZ24859.1| Holliday junction resolvase YqgF [Veillonella parvula DSM 2008]
gi|282579970|gb|EFB85374.1| RNAse YqgF [Veillonella parvula ATCC 17745]
gi|333975660|gb|EGL76539.1| RNAse H domain protein, YqgF family [Veillonella parvula
ACS-068-V-Sch12]
Length = 139
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 10/139 (7%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDF---RSLISEFNLEGFI 79
R + LDVG + +G++ SD A + + R + +DF + LISE+ + +
Sbjct: 2 RIMSLDVGSRTIGIACSDALLMTAQGIETIRRTS-----LEKDFNRLQELISEYEVHELV 56
Query: 80 VGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
VG P N N + + + ++ K++ D+ YW+E ++ E L D+ +
Sbjct: 57 VGMPKN--MNGTKGERAEKTEEFVAKMKEVIDLPVTYWDERLSTVMAERQLIAADVSRKK 114
Query: 140 YKTILDKFAAVGILQEYLD 158
K+++DK AAV ILQ YLD
Sbjct: 115 RKSVIDKMAAVVILQGYLD 133
>gi|419776842|ref|ZP_14302761.1| RNAse H domain protein, YqgF family [Streptococcus intermedius
SK54]
gi|423071691|ref|ZP_17060464.1| Holliday junction resolvase [Streptococcus intermedius F0413]
gi|424788670|ref|ZP_18215420.1| hypothetical protein D593_1856 [Streptococcus intermedius BA1]
gi|355363465|gb|EHG11202.1| Holliday junction resolvase [Streptococcus intermedius F0413]
gi|383845527|gb|EID82930.1| RNAse H domain protein, YqgF family [Streptococcus intermedius
SK54]
gi|422112450|gb|EKU16237.1| hypothetical protein D593_1856 [Streptococcus intermedius BA1]
Length = 139
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 70/142 (49%), Gaps = 13/142 (9%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDF-----RSLISEFNLEG 77
R +GLDVG K VG++ISDP A L ++ ID E+F L+ E+ +E
Sbjct: 2 RMMGLDVGSKTVGVAISDPLGFTAQGLEII-----PIDEEKEEFGFDRLSELVREYKVEK 56
Query: 78 FIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLH 136
F+VG P N + V+ + ++L + Y +E T+ E +L+ D+
Sbjct: 57 FVVGLPKNMNNTSGPRVEASRAYG--AKIEQLFHLPVEYQDERLTTVAAERMLIEQADVS 114
Query: 137 PVEYKTILDKFAAVGILQEYLD 158
+ K ++DK AA ILQ YLD
Sbjct: 115 RKKRKKVIDKLAAQLILQNYLD 136
>gi|293378151|ref|ZP_06624320.1| RNAse YqgF [Enterococcus faecium PC4.1]
gi|292643015|gb|EFF61156.1| RNAse YqgF [Enterococcus faecium PC4.1]
Length = 143
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 74/143 (51%), Gaps = 3/143 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG+++SDP A + ++ + + + + L++++ ++ F+VG
Sbjct: 2 RVMGLDVGSKTVGVAVSDPFGWTAQGVEIIRINEAEEEFGFDRLKELVAQYEVDRFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + + + + K+L + Y +E T+ E +L+ + + K
Sbjct: 62 PKNMNNSIGPRAEASMLYGE--KIKELFSLPVDYQDERLTTVQAERMLVEQANTSRAKRK 119
Query: 142 TILDKFAAVGILQEYLDNANRKV 164
++DK AAV ILQ YLD + +++
Sbjct: 120 KVIDKLAAVMILQNYLDGSGKQL 142
>gi|384263285|ref|YP_005418473.1| Putative Holliday junction resolvase [Rhodospirillum photometricum
DSM 122]
gi|378404387|emb|CCG09503.1| Putative Holliday junction resolvase [Rhodospirillum photometricum
DSM 122]
Length = 165
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 7/145 (4%)
Query: 20 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFI 79
+RG LG D+G + +G++ D +IA+P++ + R K D A+ ++LI E G +
Sbjct: 15 RRGALLGFDLGTRTIGVAACDVSWRIATPVTTVRRTKFGAD--AKVLQALIDERGAVGLV 72
Query: 80 VGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHP 137
+G P + Q + F + A L D+ W+E ++ VE L+ DL
Sbjct: 73 LGLPVEMDGSQGSRCQSTRAFAQNFLA---LRDLPLVLWDERLSTAAVERFLVGEADLSR 129
Query: 138 VEYKTILDKFAAVGILQEYLDNANR 162
+ ++D+ AA ILQ LD R
Sbjct: 130 AKRAQVVDRAAAAYILQGALDALAR 154
>gi|430750681|ref|YP_007213589.1| RNAse H-fold protein YqgF [Thermobacillus composti KWC4]
gi|430734646|gb|AGA58591.1| RNAse H-fold protein YqgF [Thermobacillus composti KWC4]
Length = 138
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 4/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLD+GD+ +G+++SD A + V+ R ++ +L E+ L+ E + +VG
Sbjct: 2 RIMGLDLGDRRIGVAVSDELGWTAQGVGVVERHRDGREL--EEIERLVREREVSEIVVGL 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N + ++ + D+ K + W+E T+ E L D+ + +
Sbjct: 60 PRNMDGSIGPRGEICIAFADMLRGKL--QLPVHLWDERLTTAAAERTLLEADVSRRKRRQ 117
Query: 143 ILDKFAAVGILQEYLDN 159
++DK AA ILQ YLD+
Sbjct: 118 VVDKLAATLILQHYLDS 134
>gi|408786017|ref|ZP_11197757.1| Holliday junction resolvase-like protein [Rhizobium lupini HPC(L)]
gi|408488206|gb|EKJ96520.1| Holliday junction resolvase-like protein [Rhizobium lupini HPC(L)]
Length = 159
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 6/135 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+G K +GL++SD + A+P V+ R K T+D AE + + + FI+G P N
Sbjct: 21 GLDLGTKTIGLAMSDLSRRFATPRPVIKRVKFTLD--AEVLLAFAEKEKVAAFIIGLPMN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
+A VQ + F+ + L + YW+E ++ E L +D+ + +
Sbjct: 79 MDGSAGPRVQATRAFVRTMGEKTAL---PFVYWDERLSTVAAERALLEMDVSRAKRAERI 135
Query: 145 DKFAAVGILQEYLDN 159
D AA ILQ LD
Sbjct: 136 DSAAASFILQGALDR 150
>gi|359411307|ref|ZP_09203772.1| Holliday junction resolvase [Clostridium sp. DL-VIII]
gi|357170191|gb|EHI98365.1| Holliday junction resolvase [Clostridium sp. DL-VIII]
Length = 137
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 10/143 (6%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K +G+++SDP A L+ + R D+ ++ + E+ E +VG
Sbjct: 2 RIIGLDVGSKTIGVAVSDPLGFTAQGLTTIRRTNKEQDI--KEIKKFCDEYKAEAIVVGL 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTSKGVELLLNPLDLHPVE 139
P N + ++ + K +E+ ++ +W+E T+ + DL +
Sbjct: 60 PKNMNGTIGPSGEITMAFG-----KTVEEELGIRVEFWDERLTTVAAHKAMLEADLSRNK 114
Query: 140 YKTILDKFAAVGILQEYLDNANR 162
K I+DK A+ ILQ YLD ++
Sbjct: 115 RKKIVDKVASTYILQGYLDRISK 137
>gi|319946059|ref|ZP_08020308.1| crossover junction endodeoxyribonuclease [Streptococcus australis
ATCC 700641]
gi|417919270|ref|ZP_12562805.1| RNAse H domain protein, YqgF family [Streptococcus australis ATCC
700641]
gi|319747867|gb|EFW00112.1| crossover junction endodeoxyribonuclease [Streptococcus australis
ATCC 700641]
gi|342833960|gb|EGU68239.1| RNAse H domain protein, YqgF family [Streptococcus australis ATCC
700641]
Length = 139
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 9/140 (6%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ + + + L+ E+ ++ F+VG
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIQIDEEKGEFGLDRLSELVKEYRVDRFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTSKGVE-LLLNPLDLHPV 138
P N + V+ + K+LE+ + Y +E T+ E +L+ D+
Sbjct: 62 PKNMNNTSGPRVEAS-----QAYGKRLEELFNLPVEYQDERLTTVAAERMLIEQADISRN 116
Query: 139 EYKTILDKFAAVGILQEYLD 158
+ K ++DK AA ILQ YLD
Sbjct: 117 KRKKVIDKLAAQLILQNYLD 136
>gi|84684665|ref|ZP_01012565.1| hypothetical protein 1099457000245_RB2654_02114 [Maritimibacter
alkaliphilus HTCC2654]
gi|84667000|gb|EAQ13470.1| hypothetical protein RB2654_02114 [Maritimibacter alkaliphilus
HTCC2654]
Length = 155
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 67/135 (49%), Gaps = 7/135 (5%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLR-KKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
GLD GDK +G+++SD ++A+PL + R KK T D AE +++ E + G ++G P
Sbjct: 21 GLDYGDKTIGVAVSDGMRQVATPLDTIRRGKKFTQD--AEALMAILDERAISGLVLGLPR 78
Query: 85 NRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143
N Q + F +LS +L + +W+E ++ E L D + +
Sbjct: 79 NMDGTEGPRCQKTRAFARNLS---RLTERPITFWDERLSTVAAERALLEADTSRAKRSGV 135
Query: 144 LDKFAAVGILQEYLD 158
+D AA ILQ LD
Sbjct: 136 IDHVAAGYILQGALD 150
>gi|304320050|ref|YP_003853693.1| endonuclease [Parvularcula bermudensis HTCC2503]
gi|303298953|gb|ADM08552.1| putative endonuclease [Parvularcula bermudensis HTCC2503]
Length = 158
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 66/139 (47%), Gaps = 6/139 (4%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV 80
+G LGLD G K +G+++S P+ ++A+P++V+ R K D A +L + G I+
Sbjct: 14 KGPLLGLDPGSKTIGVAVSTPERRLATPVTVIRRTKFGKDAEALF--ALAEARGVVGLII 71
Query: 81 GYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
G P N + Q + F +LS L AYW+E +S E L D
Sbjct: 72 GVPLNMDGSEGPRAQSARTFGRNLSQRGPLP---VAYWDERLSSVAAERALLATDTSRAR 128
Query: 140 YKTILDKFAAVGILQEYLD 158
++D AA ILQ LD
Sbjct: 129 RAEVIDAHAATHILQGALD 147
>gi|293400452|ref|ZP_06644597.1| putative Holliday junction resolvase [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|373452211|ref|ZP_09544127.1| RNAse H-fold protein YqgF [Eubacterium sp. 3_1_31]
gi|291305478|gb|EFE46722.1| putative Holliday junction resolvase [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|371966900|gb|EHO84379.1| RNAse H-fold protein YqgF [Eubacterium sp. 3_1_31]
Length = 140
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 70/140 (50%), Gaps = 3/140 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD+G + +G+S+SD IA P+ + +++ D + I EF ++ ++G
Sbjct: 2 RILGLDLGSRTLGVSVSDALGMIARPVETIRFEQDDYDSALTQIKKYIDEFQVKKAVLGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P + + ++ + + T +E W+E T+ E +L D+ + K
Sbjct: 62 PKHMNGDVGIRGEISIMFKEKLETLGVE---VILWDERLTTVAAERILISADVSRKKRKK 118
Query: 143 ILDKFAAVGILQEYLDNANR 162
++D+ AAV ILQ YLD ++
Sbjct: 119 VIDQMAAVQILQGYLDRNHQ 138
>gi|421147482|ref|ZP_15607169.1| Holliday junction resolvase-like protein [Streptococcus agalactiae
GB00112]
gi|401685836|gb|EJS81829.1| Holliday junction resolvase-like protein [Streptococcus agalactiae
GB00112]
Length = 139
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ + + + + L+ E+ ++ F+VG
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEESGNFGFDRLAELVKEYKVDKFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + V+ D +L ++ Y +E T+ E +L+ D+ + K
Sbjct: 62 PKNMNNTSGPRVEASQVYGD--KITELFNLPVEYQDERLTTVQAERMLVEQADISRGKRK 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 120 KVIDKLAAQLILQNYLD 136
>gi|126434972|ref|YP_001070663.1| Holliday junction resolvase-like protein [Mycobacterium sp. JLS]
gi|167012736|sp|A3PZ45.1|RUVX_MYCSJ RecName: Full=Putative Holliday junction resolvase
gi|126234772|gb|ABN98172.1| Holliday junction resolvase YqgF [Mycobacterium sp. JLS]
Length = 169
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 12/152 (7%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV 80
RGR +G+DVG VG++ SDP +A+P+ + R+K++ D L++E +V
Sbjct: 19 RGRRIGIDVGCVRVGVATSDPDGVLATPVETVRREKSS-DRHVRRLAQLVTELEAVEVVV 77
Query: 81 GYP---FNRQQNAA-DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH 136
G P +R AA DA+ V + +++ + +E T+ + L +
Sbjct: 78 GLPRTLADRTGPAAHDAIDVAEAL-----ARRIAPVPVRMADERLTTVSAQRSLREAGVR 132
Query: 137 PVEYKTILDKFAAVGILQEYLDNANRKVNLKA 168
+ ++D+ AAVGILQ +LD R+ L A
Sbjct: 133 AKGQRAMIDQVAAVGILQSWLD--QRRAALAA 162
>gi|238855617|ref|ZP_04645918.1| conserved hypothetical protein [Lactobacillus jensenii 269-3]
gi|260665323|ref|ZP_05866171.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
jensenii SJ-7A-US]
gi|313473102|ref|ZP_07813586.1| putative Holliday junction resolvase [Lactobacillus jensenii 1153]
gi|238831761|gb|EEQ24097.1| conserved hypothetical protein [Lactobacillus jensenii 269-3]
gi|239528661|gb|EEQ67662.1| putative Holliday junction resolvase [Lactobacillus jensenii 1153]
gi|260560827|gb|EEX26803.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
jensenii SJ-7A-US]
Length = 148
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 78/152 (51%), Gaps = 10/152 (6%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K VG++ISD A L + + + + + L+ E+++ GF++G
Sbjct: 2 RLLGLDVGSKTVGVAISDELGLTAQKLETISIDETRHNFGMKAIKKLVREYDVTGFVLGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTS-KGVELLLNPLDLHPV 138
P N + +D V V + K+LED + AY +E T+ + +L+ ++H
Sbjct: 62 PKN--MDGSDGVSVSR---SKNYGKRLEDKFSLPVAYSDERLTTIEADRVLIEEAEIHDR 116
Query: 139 -EYKTILDKFAAVGILQEYLDNANRKVNLKAN 169
+ K ++D+ AAV ILQ YLD R + N
Sbjct: 117 KKRKEVIDQMAAVLILQNYLDLKRRNTDGSNN 148
>gi|225869409|ref|YP_002745357.1| Holliday junction resolvase [Streptococcus equi subsp.
zooepidemicus]
gi|259495714|sp|C0MGB3.1|RUVX_STRS7 RecName: Full=Putative Holliday junction resolvase
gi|225702685|emb|CAX00789.1| putative Holliday junction resolvase [Streptococcus equi subsp.
zooepidemicus]
Length = 139
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ ++ D + L+ ++ ++ F++G
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIKINEDKQDFGFDRLAELVKQYQVDRFVIGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + V+ D ++L + +Y +E T+ E +L+ D+ + K
Sbjct: 62 PKNMNNTSGPRVEASKAYGD--RIEELFHIPVSYQDERLTTVEAERMLIEQADISRGKRK 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 120 KVIDKLAAQLILQNYLD 136
>gi|257870135|ref|ZP_05649788.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
gi|257804299|gb|EEV33121.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
Length = 140
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 3/141 (2%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLDVG + VG+++SDP A + ++ ++ D + L+ E+ + F+VG P
Sbjct: 1 MGLDVGSRTVGVAVSDPMGWTAQGIEIIRINEDENDFGYDRLGELVKEYEVTRFVVGLPK 60
Query: 85 NRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYKTI 143
N + L A ++ D+ Y +E T+ E +L+ + + K +
Sbjct: 61 NMNNTIGPRAEASLAYG--KAIEERFDLPVDYQDERLTTVQAERMLVEQANTSRAKRKKV 118
Query: 144 LDKFAAVGILQEYLDNANRKV 164
+DK AAV ILQ YLD A +++
Sbjct: 119 IDKLAAVMILQNYLDGAGKQL 139
>gi|374579531|ref|ZP_09652625.1| RNAse H-fold protein YqgF [Desulfosporosinus youngiae DSM 17734]
gi|374415613|gb|EHQ88048.1| RNAse H-fold protein YqgF [Desulfosporosinus youngiae DSM 17734]
Length = 137
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLD G K +G+++SD A + + R K ID + R LI E+ + I+GY
Sbjct: 2 RIMGLDFGSKTIGVAMSDSLFWTAQGVKTIRRSKKEID----ELRELIREYEVMEIIIGY 57
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N N + L + + ++ W+E ++ + L D+ + K
Sbjct: 58 PKN--MNGTLGPRCALTEEFAEVLRSEFGLEVKLWDERLSTVAAQRSLIQADVSRAKRKN 115
Query: 143 ILDKFAAVGILQEYLDN 159
++DK AAV ILQ YLD+
Sbjct: 116 VIDKMAAVFILQGYLDS 132
>gi|363891685|ref|ZP_09318863.1| RNAse H-fold protein YqgF [Eubacteriaceae bacterium CM2]
gi|402837576|ref|ZP_10886095.1| RNAse H domain protein, YqgF family [Eubacteriaceae bacterium
OBRC8]
gi|361965228|gb|EHL18219.1| RNAse H-fold protein YqgF [Eubacteriaceae bacterium CM2]
gi|402274869|gb|EJU24039.1| RNAse H domain protein, YqgF family [Eubacteriaceae bacterium
OBRC8]
Length = 142
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 74/136 (54%), Gaps = 5/136 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
+ L LDVG K +G++I+D A P S + R KN ++ + ++I E +++ +VG
Sbjct: 3 KILALDVGKKKIGIAITDLLQITAQPHSTI-RSKN-LEEQIDKIIAIIDENSIKTVVVGL 60
Query: 83 PFNRQQNAAD-AVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + D A K F++ + A K +D++ Y +E TSK L +++ ++ K
Sbjct: 61 PKNMNDSEGDQASWTKTFVERILAKK--QDIEIVYIDERLTSKMALSSLKHMNMKKIKEK 118
Query: 142 TILDKFAAVGILQEYL 157
++D AAV IL+ YL
Sbjct: 119 GLIDTVAAVNILETYL 134
>gi|325662158|ref|ZP_08150776.1| Holliday junction resolvase [Lachnospiraceae bacterium 4_1_37FAA]
gi|325471607|gb|EGC74827.1| Holliday junction resolvase [Lachnospiraceae bacterium 4_1_37FAA]
Length = 148
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 3/136 (2%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRK-KNTIDLMAEDFRSLISEFNLEGFIVGYP 83
+GLD G K VG++ISDP A + + RK +N + +L+ E+ +E ++G+P
Sbjct: 1 MGLDYGSKTVGVAISDPLGLTAQGIETICRKEENKLRKTLARIEALVQEYQVEEIVLGFP 60
Query: 84 FNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143
N D + L ++ + + W+E T+ E L ++ + K
Sbjct: 61 KNMNNTVGDRAEKSLEFKEMLERRTA--LPVTMWDERLTTVEAERTLIENNVRREDRKKY 118
Query: 144 LDKFAAVGILQEYLDN 159
+DK AAV ILQ YLD+
Sbjct: 119 VDKIAAVFILQGYLDS 134
>gi|337736898|ref|YP_004636345.1| Holliday junction resolvase-like protein [Clostridium
acetobutylicum DSM 1731]
gi|384458405|ref|YP_005670825.1| Holliday junction resolvase-like protein [Clostridium
acetobutylicum EA 2018]
gi|325509094|gb|ADZ20730.1| Holliday junction resolvase-like protein [Clostridium
acetobutylicum EA 2018]
gi|336291906|gb|AEI33040.1| Holliday junction resolvase-like protein [Clostridium
acetobutylicum DSM 1731]
Length = 135
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 4/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LG+DVG+K +G+++SDP A ++ + RK D+ ++ + L ++ ++ + G
Sbjct: 2 RILGIDVGNKTIGVALSDPLGFTAQGITTIRRKNEEEDI--KELKELCEKYEVDTIVCGL 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N N Q + + K+ D+ W+E T+ + DL + K
Sbjct: 60 PKN--MNGTIGFQSEKVLGFCEVIKQNIDVPIKMWDERLTTVAANRAMLEADLSRKKRKK 117
Query: 143 ILDKFAAVGILQEYLDN 159
++DK AA ILQ YLD+
Sbjct: 118 LVDKVAATYILQGYLDS 134
>gi|15613832|ref|NP_242135.1| hypothetical protein BH1269 [Bacillus halodurans C-125]
gi|32130069|sp|Q9KDE4.1|RUVX_BACHD RecName: Full=Putative Holliday junction resolvase
gi|10173885|dbj|BAB04988.1| BH1269 [Bacillus halodurans C-125]
Length = 140
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 4/142 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K +G+++SD A L R E SL+ E + ++G
Sbjct: 2 RTLGLDVGTKTIGIAVSDALGWTAQGLETWRRSDANEQADFEHIASLVKEHEVTTIVIGL 61
Query: 83 PFNRQQN-AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + + + F +L ++ + W+E T+ E +L D+ + K
Sbjct: 62 PKNMDGSIGPSGERSETFAAEL---RRYVPCEIVMWDERLTTTAAERMLISADVSRKKRK 118
Query: 142 TILDKFAAVGILQEYLDNANRK 163
+++DK AAV ILQ YLD K
Sbjct: 119 SVIDKMAAVMILQGYLDRQQLK 140
>gi|325568881|ref|ZP_08145174.1| crossover junction endodeoxyribonuclease [Enterococcus
casseliflavus ATCC 12755]
gi|420263817|ref|ZP_14766453.1| crossover junction endodeoxyribonuclease [Enterococcus sp. C1]
gi|325157919|gb|EGC70075.1| crossover junction endodeoxyribonuclease [Enterococcus
casseliflavus ATCC 12755]
gi|394769259|gb|EJF49122.1| crossover junction endodeoxyribonuclease [Enterococcus sp. C1]
Length = 143
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 71/143 (49%), Gaps = 3/143 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG + VG+++SDP A + ++ ++ + + L+ E+ + F+VG
Sbjct: 2 RIMGLDVGSRTVGVAVSDPMGWTAQGIEIIRINEDEGNFGYDRLAELVKEYEVSRFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + + +A ++ + Y +E T+ E +L+ + + K
Sbjct: 62 PKNMNNTIGPRAEASMAYG--AAIEQQFGLPVVYQDERLTTVQAERMLVEQANTSRAKRK 119
Query: 142 TILDKFAAVGILQEYLDNANRKV 164
++DK AAV ILQ YLD A +++
Sbjct: 120 KVIDKLAAVMILQNYLDGAGKQL 142
>gi|381210441|ref|ZP_09917512.1| hypothetical protein LGrbi_10986 [Lentibacillus sp. Grbi]
Length = 138
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 69/138 (50%), Gaps = 4/138 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
+ +GLDVG K +G+++SDP A L+ + + I E +++I E ++ ++G
Sbjct: 2 KIIGLDVGSKTIGVAVSDPLGLTAQGLTTIKWDEQHIASADEQLKTIIREQSIGKAVIGL 61
Query: 83 PFNRQQNAADAVQV-KLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P + + + + + D + A + + W+E ++ E +L D+ + K
Sbjct: 62 PKHMNGTIGERGEASRRYADHVEA---VHGIAAVLWDERLSTVAAERVLLEADMSRKKRK 118
Query: 142 TILDKFAAVGILQEYLDN 159
++DK AAV ILQ YLD
Sbjct: 119 KVIDKMAAVMILQSYLDQ 136
>gi|70726304|ref|YP_253218.1| Holliday junction resolvase-like protein [Staphylococcus
haemolyticus JCSC1435]
gi|146291068|sp|Q4L6W3.1|RUVX_STAHJ RecName: Full=Putative Holliday junction resolvase
gi|68447028|dbj|BAE04612.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 142
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 1/137 (0%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
+ LGLDVG K VG++ISD A L L + D E ++I E N+ ++G
Sbjct: 5 KILGLDVGSKTVGVAISDLMGWTAQGLDTLRINEELEDYGIEQLVTIIKENNVGSVVIGL 64
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N + + L +L + L D++ W+E ++ E L D+ + K
Sbjct: 65 PKNMNNSIGFRGEASLRYKEL-LKESLPDIEIIMWDERLSTMAAERSLLEADVSRQKRKK 123
Query: 143 ILDKFAAVGILQEYLDN 159
++DK AAV ILQ YLD+
Sbjct: 124 VIDKMAAVFILQGYLDS 140
>gi|383788133|ref|YP_005472701.1| putative Holliday junction resolvase [Caldisericum exile AZM16c01]
gi|381363769|dbj|BAL80598.1| putative Holliday junction resolvase [Caldisericum exile AZM16c01]
Length = 147
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 77/141 (54%), Gaps = 7/141 (4%)
Query: 24 FLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYP 83
L LDVG+ +G++ISD ++ A PL+++ R + ID + +++I E ++E +VG P
Sbjct: 7 ILALDVGNVNIGVAISDKEHIFAMPLAIIKRDGSEIDAI----KNIIEEKSIEEVVVGLP 62
Query: 84 FNRQQNAADAVQVKLFIDDLSATKK-LEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
N N Q + ++ L K+ L ++K+ W+E +TS +L + + +
Sbjct: 63 KN--LNGTIGPQANIVLEFLEKLKEALPNIKFVTWDERYTSVITHKMLKFQGIRSKKERK 120
Query: 143 ILDKFAAVGILQEYLDNANRK 163
I DKF A+ IL+ YL+ R+
Sbjct: 121 IKDKFEALFILESYLEFLRRQ 141
>gi|284048258|ref|YP_003398597.1| Holliday junction resolvase YqgF [Acidaminococcus fermentans DSM
20731]
gi|283952479|gb|ADB47282.1| Holliday junction resolvase YqgF [Acidaminococcus fermentans DSM
20731]
Length = 139
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 3/140 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLD+G + +G+S+SD IA + + RK DL + L+ + + F++GY
Sbjct: 2 RIMGLDLGTRTIGVSVSDETGFIARGVETIRRKGLENDL--KRLGELVEQEEVGQFVLGY 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N + D + + ++ + W+E ++ E +L DL + K
Sbjct: 60 PKNMNGSIGDRARASEEFKTI-LEERFPSIPVVLWDERLSTVAAEKVLIEADLQRKKRKK 118
Query: 143 ILDKFAAVGILQEYLDNANR 162
I+D AAV ILQ YLD+ R
Sbjct: 119 IIDMMAAVVILQNYLDSPRR 138
>gi|319407285|emb|CBI80926.1| putative resolvase [Bartonella sp. 1-1C]
Length = 163
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 12/137 (8%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLE---GFIVGY 82
LD+G K +G++ISD ++P V+ RKK T+D + +LI FN E I+G
Sbjct: 21 SLDLGTKTIGIAISDISLTFSNPRPVIYRKKFTLDAL-----TLIQIFNNENVGAIIIGL 75
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + VQ K F+ +++ ++ + +W+E ++ E LL +D+ + K
Sbjct: 76 PLNMNGSNGPRVQATKTFVSNMAT---YTEIPFVFWDERLSTIAAERLLLEMDMSRSKRK 132
Query: 142 TILDKFAAVGILQEYLD 158
+ +D AA ILQ LD
Sbjct: 133 SRIDSAAAAFILQGALD 149
>gi|409436946|ref|ZP_11264105.1| putative Holliday junction resolvase [Rhizobium mesoamericanum
STM3625]
gi|408751420|emb|CCM75259.1| putative Holliday junction resolvase [Rhizobium mesoamericanum
STM3625]
Length = 164
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+G K +GLS+SD + ++P V+ R+K ID A + + F++G P N
Sbjct: 21 GLDLGTKTIGLSMSDLGRRFSTPRPVIRREKFAID--AVTLLEFAAREKVAAFVIGLPMN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
+A VQ + F+ ++ ++ D+ + YW+E ++ E L +D+ + +
Sbjct: 79 MDGSAGPRVQATRAFVRNM---EQKTDLPFVYWDERLSTVAAERALLEMDVSRRQRAERI 135
Query: 145 DKFAAVGILQEYLDN 159
D AA ILQ LD
Sbjct: 136 DSAAASFILQGALDR 150
>gi|336421926|ref|ZP_08602081.1| Holliday junction resolvase [Lachnospiraceae bacterium 5_1_57FAA]
gi|336009775|gb|EGN39766.1| Holliday junction resolvase [Lachnospiraceae bacterium 5_1_57FAA]
Length = 138
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 66/137 (48%), Gaps = 5/137 (3%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRK-KNTIDLMAEDFRSLISEFNLEGFIVGYP 83
+GLD G K VG++ISDP A + + RK +N + +LI E+ +E ++G P
Sbjct: 1 MGLDYGSKTVGVAISDPLGITAQAIETICRKDENKLRKTCARIETLIEEYKVERIVLGLP 60
Query: 84 FNRQQNAADAVQVKL-FIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
+ + D + L F LS LE W+E T+ E L + + K
Sbjct: 61 KHMNNDIGDRAERSLEFGKMLSRRTGLE---VVMWDERLTTVEAERTLIENKVRREDRKK 117
Query: 143 ILDKFAAVGILQEYLDN 159
+DK AAV ILQ YLD+
Sbjct: 118 YIDKIAAVFILQGYLDS 134
>gi|335429495|ref|ZP_08556393.1| RNase H-like ribonuclease [Haloplasma contractile SSD-17B]
gi|334889505|gb|EGM27790.1| RNase H-like ribonuclease [Haloplasma contractile SSD-17B]
Length = 138
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 67/136 (49%), Gaps = 4/136 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD+G K +G+++SD A L +N + LI E N+ ++GY
Sbjct: 2 RALGLDLGSKTLGIAMSDALGYTAQGLETFRFNENHYVHAIDRVIELIDEHNVSKIVIGY 61
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + + + V+ F++ L K ++ W+E T+ E +L DL + K
Sbjct: 62 PKNMDGSIGERAKIVERFVNKLKGKKPID---VVLWDERMTTMEAEKILIDADLSRKKRK 118
Query: 142 TILDKFAAVGILQEYL 157
++DK AA+ ILQ YL
Sbjct: 119 KVIDKMAAIVILQSYL 134
>gi|121535968|ref|ZP_01667762.1| Holliday junction resolvase YqgF [Thermosinus carboxydivorans Nor1]
gi|121305460|gb|EAX46408.1| Holliday junction resolvase YqgF [Thermosinus carboxydivorans Nor1]
Length = 140
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 66/142 (46%), Gaps = 5/142 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R L LDVG+K +G ++SD A + V+ R D+ R L F IVG
Sbjct: 2 RILALDVGEKTIGAAVSDELLLTAQGVEVIRRMSPEADMA--RIRELAEHFEATVIIVGL 59
Query: 83 PFNRQQN-AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N +VK F +L L ++ W+E ++ E L D+ + +
Sbjct: 60 PKNMNGTIGPQGEKVKAFASELQ--NYLAGIEVRLWDERLSTVAAERSLIAADVRRAKRR 117
Query: 142 TILDKFAAVGILQEYLDNANRK 163
++DK AAV ILQ YLD+ +RK
Sbjct: 118 QVIDKMAAVFILQGYLDSLSRK 139
>gi|358465318|ref|ZP_09175268.1| RNAse H domain protein, YqgF family [Streptococcus sp. oral taxon
058 str. F0407]
gi|357065813|gb|EHI75988.1| RNAse H domain protein, YqgF family [Streptococcus sp. oral taxon
058 str. F0407]
Length = 139
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ ++ + R L+ + +E F+VG
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIQIDEDQGQFGFDRIRKLVDSYKVERFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTSKGVE-LLLNPLDLHPV 138
P N + V+ + KLE+ + Y +E T+ E +L+ D+
Sbjct: 62 PKNMNNTSGPRVEAS-----QAYGAKLEEIFGLPVDYQDERLTTVAAERMLIEQADISRN 116
Query: 139 EYKTILDKFAAVGILQEYLD 158
+ K ++DK AA ILQ YLD
Sbjct: 117 KRKKVIDKLAAQLILQNYLD 136
>gi|431794397|ref|YP_007221302.1| RNAse H-fold protein YqgF [Desulfitobacterium dichloroeliminans LMG
P-21439]
gi|430784623|gb|AGA69906.1| RNAse H-fold protein YqgF [Desulfitobacterium dichloroeliminans LMG
P-21439]
Length = 138
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 8/138 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD G++ +G+++SD A + + R K + E+ R +I ++ ++ I+GY
Sbjct: 2 RILGLDFGERTIGVAVSDALLLTAQGIKTIRRSKKEL----EELRQIIHDYEVDEVILGY 57
Query: 83 PFNRQQN-AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N A + F + L L + W+E ++ G + L DL + K
Sbjct: 58 PKNMNGTLGPRATMTEEFAEILKGEYGLPVL---LWDERLSTIGAQRSLLEADLSRAKRK 114
Query: 142 TILDKFAAVGILQEYLDN 159
++DK AAV ILQ YLD+
Sbjct: 115 KVIDKMAAVFILQGYLDH 132
>gi|303229331|ref|ZP_07316121.1| RNAse H domain protein, YqgF family [Veillonella atypica
ACS-134-V-Col7a]
gi|302515867|gb|EFL57819.1| RNAse H domain protein, YqgF family [Veillonella atypica
ACS-134-V-Col7a]
Length = 140
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 12/140 (8%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDF---RSLISEFNLEGFI 79
R + LDVG + +G++ SD A + + R + DF R LISE+ + +
Sbjct: 2 RIMALDVGSRTIGIACSDALLMTAQGIETIRRTS-----LENDFNRLRELISEYEVHELV 56
Query: 80 VGYPFNRQQNAAD-AVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
VG P N + A + + F++ + A + D+ +W+E ++ E L D+
Sbjct: 57 VGMPKNMNGTKGERAEKTEEFVEKMKA---VIDLPVTFWDERLSTVMAERQLIAADVSRK 113
Query: 139 EYKTILDKFAAVGILQEYLD 158
+ K ++DK AAV ILQ YLD
Sbjct: 114 KRKGVIDKMAAVVILQGYLD 133
>gi|373454695|ref|ZP_09546559.1| RNAse H-fold protein YqgF [Dialister succinatiphilus YIT 11850]
gi|371935558|gb|EHO63303.1| RNAse H-fold protein YqgF [Dialister succinatiphilus YIT 11850]
Length = 142
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 5/142 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R + LDVG +G+++SD A L + D + R L ++ +E F++G
Sbjct: 2 RIMSLDVGSVTIGVAVSDLFGWTAQGLETIRHTTREADF--KRLRQLTDQYQVEEFVIGL 59
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N V+ + F ++L+ K D+ Y +W+E T+ + L D+ + K
Sbjct: 60 PLNMDGTRGIRVERTEAFAEELA--KAFPDIPYHFWDERLTTVMAQKQLIAADVSRKKRK 117
Query: 142 TILDKFAAVGILQEYLDNANRK 163
++DK AAV IL+ YL + + K
Sbjct: 118 KVIDKMAAVAILEGYLQHLSLK 139
>gi|228993125|ref|ZP_04153047.1| Holliday junction resolvase [Bacillus pseudomycoides DSM 12442]
gi|228999173|ref|ZP_04158755.1| Holliday junction resolvase [Bacillus mycoides Rock3-17]
gi|229006721|ref|ZP_04164355.1| Holliday junction resolvase [Bacillus mycoides Rock1-4]
gi|228754582|gb|EEM03993.1| Holliday junction resolvase [Bacillus mycoides Rock1-4]
gi|228760790|gb|EEM09754.1| Holliday junction resolvase [Bacillus mycoides Rock3-17]
gi|228766584|gb|EEM15225.1| Holliday junction resolvase [Bacillus pseudomycoides DSM 12442]
Length = 137
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 2/137 (1%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K VG++ISD A L + + + L+ ++N++ IVG
Sbjct: 2 RILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGQFGFDRISELVKQYNVDKIIVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N N + + + ++L + W+E ++ E LL D+ + K
Sbjct: 62 PKN--MNGTIGPRGEACQQFAQSLRELLQLDVMMWDERLSTMAAERLLISADVSRKKRKQ 119
Query: 143 ILDKFAAVGILQEYLDN 159
++DK AAV ILQ YLD+
Sbjct: 120 VIDKMAAVVILQGYLDS 136
>gi|170746909|ref|YP_001753169.1| Holliday junction resolvase YqgF [Methylobacterium radiotolerans
JCM 2831]
gi|170653431|gb|ACB22486.1| Holliday junction resolvase YqgF [Methylobacterium radiotolerans
JCM 2831]
Length = 170
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 6/137 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +G+D+G K +GL++SD +IA+PL + R K T D A+ +L + + G +VG
Sbjct: 18 RLIGIDLGTKTIGLALSDLGRQIATPLETIRRVKFTPD--AQRLAALCRQHAVGGLVVGL 75
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + VQ + F+ +L+ + + + +++E ++ V L D
Sbjct: 76 PLNMDGSEGPRVQSTRAFMRNLA---PILPLPHVFFDERLSTAVVTRALIEADASRARRG 132
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ LD
Sbjct: 133 QLVDKLAAAYILQGCLD 149
>gi|69245163|ref|ZP_00603287.1| Conserved hypothetical protein 250 [Enterococcus faecium DO]
gi|257879617|ref|ZP_05659270.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
gi|257883923|ref|ZP_05663576.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
gi|257890284|ref|ZP_05669937.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
gi|260559720|ref|ZP_05831900.1| conserved hypothetical protein [Enterococcus faecium C68]
gi|261208764|ref|ZP_05923201.1| conserved hypothetical protein [Enterococcus faecium TC 6]
gi|289565552|ref|ZP_06445999.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
gi|293560123|ref|ZP_06676627.1| conserved hypothetical protein [Enterococcus faecium E1162]
gi|294614420|ref|ZP_06694336.1| hypothetical protein EfmE1636_0526 [Enterococcus faecium E1636]
gi|294617987|ref|ZP_06697592.1| conserved hypothetical protein [Enterococcus faecium E1679]
gi|314939503|ref|ZP_07846735.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133a04]
gi|314944177|ref|ZP_07850822.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133C]
gi|314949753|ref|ZP_07853063.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0082]
gi|314951904|ref|ZP_07854936.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133A]
gi|314994470|ref|ZP_07859749.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133B]
gi|314997874|ref|ZP_07862775.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133a01]
gi|383329483|ref|YP_005355367.1| Holliday junction resolvase-like protein [Enterococcus faecium
Aus0004]
gi|389869330|ref|YP_006376753.1| crossover junction endodeoxyribonuclease [Enterococcus faecium DO]
gi|415895735|ref|ZP_11550656.1| Putative Holliday junction resolvase [Enterococcus faecium E4453]
gi|424790858|ref|ZP_18217363.1| RNAse H domain protein, YqgF family [Enterococcus faecium V689]
gi|424834603|ref|ZP_18259304.1| RNAse H domain protein, YqgF family [Enterococcus faecium R501]
gi|424867103|ref|ZP_18290915.1| RNAse H domain protein, YqgF family [Enterococcus faecium R497]
gi|424954703|ref|ZP_18369590.1| RNAse H domain protein, YqgF family [Enterococcus faecium R494]
gi|424962773|ref|ZP_18377080.1| RNAse H domain protein, YqgF family [Enterococcus faecium P1190]
gi|424970167|ref|ZP_18383697.1| RNAse H domain protein, YqgF family [Enterococcus faecium P1139]
gi|424973544|ref|ZP_18386819.1| RNAse H domain protein, YqgF family [Enterococcus faecium P1137]
gi|424977993|ref|ZP_18390953.1| RNAse H domain protein, YqgF family [Enterococcus faecium P1123]
gi|424979978|ref|ZP_18392800.1| RNAse H domain protein, YqgF family [Enterococcus faecium ERV99]
gi|424984338|ref|ZP_18396875.1| RNAse H domain protein, YqgF family [Enterococcus faecium ERV69]
gi|424986721|ref|ZP_18399127.1| RNAse H domain protein, YqgF family [Enterococcus faecium ERV38]
gi|424991350|ref|ZP_18403508.1| RNAse H domain protein, YqgF family [Enterococcus faecium ERV26]
gi|425006753|ref|ZP_18417914.1| RNAse H domain protein, YqgF family [Enterococcus faecium ERV1]
gi|425014631|ref|ZP_18425299.1| RNAse H domain protein, YqgF family [Enterococcus faecium E417]
gi|425020375|ref|ZP_18430683.1| RNAse H domain protein, YqgF family [Enterococcus faecium C497]
gi|425025345|ref|ZP_18434537.1| RNAse H domain protein, YqgF family [Enterococcus faecium C1904]
gi|425036313|ref|ZP_18441079.1| RNAse H domain protein, YqgF family [Enterococcus faecium 514]
gi|425038073|ref|ZP_18442704.1| RNAse H domain protein, YqgF family [Enterococcus faecium 513]
gi|425043668|ref|ZP_18447882.1| RNAse H domain protein, YqgF family [Enterococcus faecium 511]
gi|425044245|ref|ZP_18448418.1| RNAse H domain protein, YqgF family [Enterococcus faecium 510]
gi|425048330|ref|ZP_18452238.1| RNAse H domain protein, YqgF family [Enterococcus faecium 509]
gi|425052670|ref|ZP_18456262.1| RNAse H domain protein, YqgF family [Enterococcus faecium 506]
gi|425060775|ref|ZP_18464053.1| RNAse H domain protein, YqgF family [Enterococcus faecium 503]
gi|427396599|ref|ZP_18889358.1| RNAse H-fold protein YqgF [Enterococcus durans FB129-CNAB-4]
gi|430822953|ref|ZP_19441528.1| RNAse H-fold protein YqgF [Enterococcus faecium E0120]
gi|430831174|ref|ZP_19449227.1| RNAse H-fold protein YqgF [Enterococcus faecium E0333]
gi|430847938|ref|ZP_19465771.1| YqgF family RNAse H domain-containing protein [Enterococcus faecium
E1133]
gi|430849157|ref|ZP_19466938.1| RNAse H-fold protein YqgF [Enterococcus faecium E1185]
gi|430852115|ref|ZP_19469850.1| RNAse H-fold protein YqgF [Enterococcus faecium E1258]
gi|430855342|ref|ZP_19473051.1| RNAse H-fold protein YqgF [Enterococcus faecium E1392]
gi|430865692|ref|ZP_19481267.1| RNAse H-fold protein YqgF [Enterococcus faecium E1574]
gi|430946170|ref|ZP_19485646.1| RNAse H-fold protein YqgF [Enterococcus faecium E1576]
gi|431002097|ref|ZP_19488688.1| RNAse H-fold protein YqgF [Enterococcus faecium E1578]
gi|431251026|ref|ZP_19503960.1| RNAse H-fold protein YqgF [Enterococcus faecium E1623]
gi|431374624|ref|ZP_19510312.1| RNAse H-fold protein YqgF [Enterococcus faecium E1627]
gi|431415559|ref|ZP_19512362.1| RNAse H-fold protein YqgF [Enterococcus faecium E1630]
gi|431546222|ref|ZP_19518847.1| RNAse H-fold protein YqgF [Enterococcus faecium E1731]
gi|431638699|ref|ZP_19523326.1| RNAse H-fold protein YqgF [Enterococcus faecium E1904]
gi|431742690|ref|ZP_19531575.1| RNAse H-fold protein YqgF [Enterococcus faecium E2071]
gi|431748859|ref|ZP_19537612.1| YqgF family RNAse H domain-containing protein [Enterococcus faecium
E2297]
gi|431755301|ref|ZP_19543955.1| RNAse H-fold protein YqgF [Enterococcus faecium E2883]
gi|431759758|ref|ZP_19548368.1| RNAse H-fold protein YqgF [Enterococcus faecium E3346]
gi|431771279|ref|ZP_19559665.1| RNAse H-fold protein YqgF [Enterococcus faecium E1644]
gi|431772719|ref|ZP_19561057.1| YqgF family RNAse H domain-containing protein [Enterococcus faecium
E2369]
gi|68196006|gb|EAN10439.1| Conserved hypothetical protein 250 [Enterococcus faecium DO]
gi|257813845|gb|EEV42603.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
gi|257819761|gb|EEV46909.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
gi|257826644|gb|EEV53270.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
gi|260074388|gb|EEW62710.1| conserved hypothetical protein [Enterococcus faecium C68]
gi|260077266|gb|EEW64986.1| conserved hypothetical protein [Enterococcus faecium TC 6]
gi|289162634|gb|EFD10487.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
gi|291592728|gb|EFF24321.1| hypothetical protein EfmE1636_0526 [Enterococcus faecium E1636]
gi|291595796|gb|EFF27084.1| conserved hypothetical protein [Enterococcus faecium E1679]
gi|291605990|gb|EFF35420.1| conserved hypothetical protein [Enterococcus faecium E1162]
gi|313588099|gb|EFR66944.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133a01]
gi|313591125|gb|EFR69970.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133B]
gi|313595938|gb|EFR74783.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133A]
gi|313597239|gb|EFR76084.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133C]
gi|313641204|gb|EFS05784.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133a04]
gi|313643826|gb|EFS08406.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0082]
gi|364091456|gb|EHM33921.1| Putative Holliday junction resolvase [Enterococcus faecium E4453]
gi|378939177|gb|AFC64249.1| Holliday junction resolvase-like protein [Enterococcus faecium
Aus0004]
gi|388534579|gb|AFK59771.1| crossover junction endodeoxyribonuclease [Enterococcus faecium DO]
gi|402920340|gb|EJX40861.1| RNAse H domain protein, YqgF family [Enterococcus faecium V689]
gi|402922242|gb|EJX42641.1| RNAse H domain protein, YqgF family [Enterococcus faecium R501]
gi|402935917|gb|EJX55125.1| RNAse H domain protein, YqgF family [Enterococcus faecium R494]
gi|402938154|gb|EJX57181.1| RNAse H domain protein, YqgF family [Enterococcus faecium R497]
gi|402951286|gb|EJX69233.1| RNAse H domain protein, YqgF family [Enterococcus faecium P1190]
gi|402958325|gb|EJX75641.1| RNAse H domain protein, YqgF family [Enterococcus faecium P1137]
gi|402962474|gb|EJX79412.1| RNAse H domain protein, YqgF family [Enterococcus faecium P1139]
gi|402963601|gb|EJX80456.1| RNAse H domain protein, YqgF family [Enterococcus faecium P1123]
gi|402967683|gb|EJX84216.1| RNAse H domain protein, YqgF family [Enterococcus faecium ERV99]
gi|402969163|gb|EJX85599.1| RNAse H domain protein, YqgF family [Enterococcus faecium ERV69]
gi|402975873|gb|EJX91800.1| RNAse H domain protein, YqgF family [Enterococcus faecium ERV38]
gi|402977061|gb|EJX92908.1| RNAse H domain protein, YqgF family [Enterococcus faecium ERV26]
gi|402996511|gb|EJY10891.1| RNAse H domain protein, YqgF family [Enterococcus faecium ERV1]
gi|402998061|gb|EJY12339.1| RNAse H domain protein, YqgF family [Enterococcus faecium E417]
gi|403006769|gb|EJY20389.1| RNAse H domain protein, YqgF family [Enterococcus faecium C1904]
gi|403009367|gb|EJY22820.1| RNAse H domain protein, YqgF family [Enterococcus faecium C497]
gi|403015132|gb|EJY28070.1| RNAse H domain protein, YqgF family [Enterococcus faecium 514]
gi|403018314|gb|EJY31006.1| RNAse H domain protein, YqgF family [Enterococcus faecium 511]
gi|403020220|gb|EJY32772.1| RNAse H domain protein, YqgF family [Enterococcus faecium 513]
gi|403030345|gb|EJY42039.1| RNAse H domain protein, YqgF family [Enterococcus faecium 510]
gi|403030819|gb|EJY42474.1| RNAse H domain protein, YqgF family [Enterococcus faecium 509]
gi|403033447|gb|EJY44949.1| RNAse H domain protein, YqgF family [Enterococcus faecium 506]
gi|403042261|gb|EJY53224.1| RNAse H domain protein, YqgF family [Enterococcus faecium 503]
gi|425723269|gb|EKU86160.1| RNAse H-fold protein YqgF [Enterococcus durans FB129-CNAB-4]
gi|430442882|gb|ELA52903.1| RNAse H-fold protein YqgF [Enterococcus faecium E0120]
gi|430482045|gb|ELA59186.1| RNAse H-fold protein YqgF [Enterococcus faecium E0333]
gi|430536314|gb|ELA76690.1| YqgF family RNAse H domain-containing protein [Enterococcus faecium
E1133]
gi|430538003|gb|ELA78302.1| RNAse H-fold protein YqgF [Enterococcus faecium E1185]
gi|430542697|gb|ELA82805.1| RNAse H-fold protein YqgF [Enterococcus faecium E1258]
gi|430547348|gb|ELA87284.1| RNAse H-fold protein YqgF [Enterococcus faecium E1392]
gi|430552757|gb|ELA92483.1| RNAse H-fold protein YqgF [Enterococcus faecium E1574]
gi|430558642|gb|ELA98054.1| RNAse H-fold protein YqgF [Enterococcus faecium E1576]
gi|430562217|gb|ELB01468.1| RNAse H-fold protein YqgF [Enterococcus faecium E1578]
gi|430578933|gb|ELB17480.1| RNAse H-fold protein YqgF [Enterococcus faecium E1623]
gi|430583248|gb|ELB21637.1| RNAse H-fold protein YqgF [Enterococcus faecium E1627]
gi|430589003|gb|ELB27160.1| RNAse H-fold protein YqgF [Enterococcus faecium E1630]
gi|430591541|gb|ELB29570.1| RNAse H-fold protein YqgF [Enterococcus faecium E1731]
gi|430602178|gb|ELB39757.1| RNAse H-fold protein YqgF [Enterococcus faecium E1904]
gi|430607924|gb|ELB45220.1| RNAse H-fold protein YqgF [Enterococcus faecium E2071]
gi|430612555|gb|ELB49591.1| YqgF family RNAse H domain-containing protein [Enterococcus faecium
E2297]
gi|430617301|gb|ELB54175.1| RNAse H-fold protein YqgF [Enterococcus faecium E2883]
gi|430625660|gb|ELB62275.1| RNAse H-fold protein YqgF [Enterococcus faecium E3346]
gi|430633804|gb|ELB69958.1| RNAse H-fold protein YqgF [Enterococcus faecium E1644]
gi|430637798|gb|ELB73797.1| YqgF family RNAse H domain-containing protein [Enterococcus faecium
E2369]
Length = 143
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 74/143 (51%), Gaps = 3/143 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A + ++ + + + + L++++ ++ F+VG
Sbjct: 2 RVMGLDVGSKTVGVAISDPFGWTAQGVEIIRINEAEEEFGFDRLKELVAQYEVDRFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + + + + K+L + Y +E T+ E +L+ + + K
Sbjct: 62 PKNMNNSIGPRAEASMSYGE--KIKELFSLPVDYQDERLTTVQAERMLVEQANTSRAKRK 119
Query: 142 TILDKFAAVGILQEYLDNANRKV 164
++DK AAV ILQ YLD + +++
Sbjct: 120 KVIDKLAAVMILQNYLDGSGKQL 142
>gi|94967587|ref|YP_589635.1| Holliday junction resolvase YqgF [Candidatus Koribacter versatilis
Ellin345]
gi|124107438|sp|Q1IU89.1|RUVX_ACIBL RecName: Full=Putative Holliday junction resolvase
gi|94549637|gb|ABF39561.1| Holliday junction resolvase YqgF [Candidatus Koribacter versatilis
Ellin345]
Length = 153
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 71/146 (48%), Gaps = 4/146 (2%)
Query: 14 LKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEF 73
+K + GR L LD G + +GL++SDP A L LLRK DL A RS+I +
Sbjct: 1 MKEPSAVHGRILALDFGTRRIGLAVSDPLGITAQGLQTLLRKNKRTDLAA--LRSVIEQN 58
Query: 74 NLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPL 133
+ +VG P + + AD+ + + + +K + W+E FTS +L
Sbjct: 59 EIREIVVGLPL--RLSGADSSSTEKAREFAAWLEKEFALPVHMWDERFTSVEANRVLRES 116
Query: 134 DLHPVEYKTILDKFAAVGILQEYLDN 159
++ + +D+ +AV ILQ +L+
Sbjct: 117 EMSIKKRGEAVDRLSAVLILQAFLER 142
>gi|408379533|ref|ZP_11177127.1| Holliday junction resolvase-like protein [Agrobacterium
albertimagni AOL15]
gi|407747017|gb|EKF58539.1| Holliday junction resolvase-like protein [Agrobacterium
albertimagni AOL15]
Length = 165
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 6/134 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+G K +GLS SD + A+P V+ R K T D AE + ++ + F++G P N
Sbjct: 21 GLDLGTKTIGLSASDLGRRFATPRPVIKRVKFTQD--AEVLLAFAAKEKIAAFVIGLPVN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
++ VQ + F+ +S + D+ + YW+E ++ E L +D+ + +
Sbjct: 79 MDGSSGPRVQATRAFVRSMS---EKTDIPFIYWDERLSTVAAERALLEMDVSRAKRSERI 135
Query: 145 DKFAAVGILQEYLD 158
D AA ILQ LD
Sbjct: 136 DSAAASFILQGALD 149
>gi|28210758|ref|NP_781702.1| Holliday junction resolvase-like protein [Clostridium tetani E88]
gi|32130019|sp|Q896F1.1|RUVX_CLOTE RecName: Full=Putative Holliday junction resolvase
gi|28203196|gb|AAO35639.1| DNA integration/recombination protein [Clostridium tetani E88]
Length = 138
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 71/144 (49%), Gaps = 10/144 (6%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRK--KNTIDLMAEDFRSLISEFNLEGFIV 80
R LGLDVGD+ +G++ISDP A + + R KN I ++ + +E+ ++ +
Sbjct: 2 RILGLDVGDRTIGVAISDPLGWTAQGVKTIKRSNLKNDI----KEIEDICNEYKVDKIVS 57
Query: 81 GYPFNRQQN-AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
G P N + +V F D L KK + + W+E T+ + DL +
Sbjct: 58 GLPKNMNGTLGPQSEKVTEFCDIL---KKELEKEIIMWDERLTTVAAHKAMIEGDLSRAK 114
Query: 140 YKTILDKFAAVGILQEYLDNANRK 163
K I+DK AA+ ILQ YLD+ K
Sbjct: 115 RKKIVDKIAAIYILQGYLDSVYNK 138
>gi|365893817|ref|ZP_09431985.1| putative Holliday junction resolvase [Bradyrhizobium sp. STM 3843]
gi|365425411|emb|CCE04527.1| putative Holliday junction resolvase [Bradyrhizobium sp. STM 3843]
Length = 161
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 6/141 (4%)
Query: 20 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFI 79
+RG +GLD+G K +G+++SDP K+A+ + + RK A +L +E G +
Sbjct: 17 ERGALIGLDLGTKTIGVAVSDPDRKLATGVETIQRK--AFKADAARLLALATERKAVGIV 74
Query: 80 VGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
+G P N + Q + F +L+ L D+ W+E ++ VE L +D+
Sbjct: 75 LGLPINMDGSEGPRAQSTRAFARNLAG---LTDLPIGLWDERLSTAAVERELIGMDVSRA 131
Query: 139 EYKTILDKFAAVGILQEYLDN 159
++D AA+ ILQ LD
Sbjct: 132 RRAEVIDTHAAIFILQGALDR 152
>gi|404258401|ref|ZP_10961721.1| putative Holliday junction resolvase [Gordonia namibiensis NBRC
108229]
gi|403403081|dbj|GAC00131.1| putative Holliday junction resolvase [Gordonia namibiensis NBRC
108229]
Length = 143
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 73/141 (51%), Gaps = 6/141 (4%)
Query: 20 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKN-TIDLMAEDFRSLISEFNLEGF 78
+RGR LG+DVG +G+++ DP +A+P+ + R + T DL + L+ E+ G
Sbjct: 4 QRGRRLGIDVGSVRIGVAVCDPDGILATPVETVRRTPSATTDL--DRIVELVVEYEAIGV 61
Query: 79 IVGYPFNRQQNAADAVQV-KLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHP 137
++G P + A + + F D L+ +++ + + +E FT+ + L+
Sbjct: 62 VIGLPKTLKNTTGVAAETARAFGDRLA--ERIAPAEVHWQDERFTTVTAQQALHASGRTV 119
Query: 138 VEYKTILDKFAAVGILQEYLD 158
+ ++D+ AAV ILQ +LD
Sbjct: 120 KSSRGVIDQAAAVAILQGWLD 140
>gi|227484975|ref|ZP_03915291.1| crossover junction endodeoxyribonuclease [Anaerococcus lactolyticus
ATCC 51172]
gi|227237130|gb|EEI87145.1| crossover junction endodeoxyribonuclease [Anaerococcus lactolyticus
ATCC 51172]
Length = 139
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 68/141 (48%), Gaps = 6/141 (4%)
Query: 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 81
R +GLDVGDK +G+++SDP A P + R K D+ + + E ++ +VG
Sbjct: 2 SRIMGLDVGDKTIGVALSDPLFITAQPYETIKRTKAKFDI--DRIEKIFVENDISLIVVG 59
Query: 82 YPFNRQQNAA-DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
P N ++++ F+D KK D + Y +E T+ E +L + +
Sbjct: 60 LPKNMNNTMGPQSMRIISFVD---LIKKRIDTEIVYQDERLTTIQSESVLIDMSVRRENR 116
Query: 141 KTILDKFAAVGILQEYLDNAN 161
K +DK AA ILQ YLD N
Sbjct: 117 KAHIDKIAASFILQTYLDRRN 137
>gi|357011680|ref|ZP_09076679.1| Putative Holliday junction resolvase [Paenibacillus elgii B69]
Length = 140
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLD GDK +G+++SD A L V+ R D+ R LI+++++ +VG
Sbjct: 2 RLMGLDYGDKTIGVAVSDELGWTAQGLEVIRRTTEERDMTR--LRELIAQYSVTEIVVGL 59
Query: 83 PFNRQQNAADAVQVKL-FIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N ++ + F + + T +L W+E T+ + L D+ + K
Sbjct: 60 PKNMNNTIGPRGEICIAFSEQVHETLQL---PVHLWDERLTTASAQRTLLEADVSRKKRK 116
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ Y+D
Sbjct: 117 QVIDKMAAALILQGYMD 133
>gi|422853265|ref|ZP_16899929.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK160]
gi|325697277|gb|EGD39163.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK160]
Length = 139
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ ++ + E L+ E+ ++ F++G
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEDKGEFGLERLGELVKEYKVDKFVIGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + V+ A +L + Y +E T+ E +L+ D+ + K
Sbjct: 62 PKNMNNTSGPRVEASQAYGQRVA--ELFGLPVDYQDERLTTVAAERMLVEQADISRSKRK 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 120 KVIDKLAAQLILQNYLD 136
>gi|302382947|ref|YP_003818770.1| Holliday junction resolvase YqgF [Brevundimonas subvibrioides ATCC
15264]
gi|302193575|gb|ADL01147.1| Holliday junction resolvase YqgF [Brevundimonas subvibrioides ATCC
15264]
Length = 173
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 7/137 (5%)
Query: 24 FLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYP 83
++GLD+G+ +G++ SD IASPL ++ + K T + A FR L+ + ++G P
Sbjct: 27 WMGLDLGETTIGVATSDTSRMIASPLELIRKSKFTAEAHAL-FR-LMDHRKVSALVIGLP 84
Query: 84 FNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
N Q + F +L ++ + A+W+E ++ VE L++ LDL
Sbjct: 85 VNMDGTEGPRAQSCRAFARNL---DRIRPVNVAFWDERLSTSAVERFLIDELDLSRKRRA 141
Query: 142 TILDKFAAVGILQEYLD 158
++D+ AA ILQ LD
Sbjct: 142 GVVDRTAAAWILQGALD 158
>gi|126739041|ref|ZP_01754735.1| hypothetical protein RSK20926_21614 [Roseobacter sp. SK209-2-6]
gi|126719658|gb|EBA16366.1| hypothetical protein RSK20926_21614 [Roseobacter sp. SK209-2-6]
Length = 157
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 6/135 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD G+K +G++ISD +A+PL + RKK T+D AE + + G ++G P N
Sbjct: 21 GLDFGEKTIGIAISDRIGAVATPLETIRRKKFTLD--AERLFEITKAREIGGLVLGLPRN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
+ Q + F +L +KL ++ +W+E ++ E L D ++
Sbjct: 79 MDGSEGPRCQKTRAFARNL---EKLTELPITFWDERLSTVAAERALLEADTSRKRRAEVI 135
Query: 145 DKFAAVGILQEYLDN 159
D AA ILQ LD
Sbjct: 136 DHVAASYILQGALDR 150
>gi|319404280|emb|CBI77873.1| putative resolvase [Bartonella rochalimae ATCC BAA-1498]
Length = 163
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 12/137 (8%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLE---GFIVGY 82
LD+G K +G++ISD ++P V+ RKK T+D + +LI FN E I+G
Sbjct: 21 SLDLGTKTIGIAISDISLTFSNPRPVIYRKKFTLDAL-----TLIQIFNNENVGAIIIGL 75
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + VQ K F+ +++ ++ + +W+E ++ E LL +D+ + K
Sbjct: 76 PLNMNGSNGPRVQATKTFVSNMAT---YTEIPFVFWDERLSTIAAERLLLEMDMSRSKRK 132
Query: 142 TILDKFAAVGILQEYLD 158
+ +D AA ILQ LD
Sbjct: 133 SRIDSAAAAFILQGALD 149
>gi|262202251|ref|YP_003273459.1| Holliday junction resolvase YqgF [Gordonia bronchialis DSM 43247]
gi|262085598|gb|ACY21566.1| Holliday junction resolvase YqgF [Gordonia bronchialis DSM 43247]
Length = 143
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 72/139 (51%), Gaps = 4/139 (2%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV 80
RGR LG+DVG +G+++ DP +A+P+ + R + D + E +L+ E++ IV
Sbjct: 5 RGRRLGVDVGSVRIGVAVCDPDGILATPVETVARTPHNDDDI-ERIATLVDEYDAAEVIV 63
Query: 81 GYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
G P R + A A + F D L+A ++ + +Y +E T+ + +
Sbjct: 64 GLPKTLRNEAGAAAEAARDFGDRLAA--RIAPVGVSYHDERLTTVTAHQAMRASGRNAKS 121
Query: 140 YKTILDKFAAVGILQEYLD 158
+ ++D+ AAV ILQ +LD
Sbjct: 122 SRAVIDQAAAVAILQGWLD 140
>gi|49474241|ref|YP_032283.1| hypothetical protein BQ06360 [Bartonella quintana str. Toulouse]
gi|62900974|sp|Q6FZS7.1|RUVX_BARQU RecName: Full=Putative Holliday junction resolvase
gi|49239745|emb|CAF26127.1| hypothetical protein BQ06360 [Bartonella quintana str. Toulouse]
Length = 159
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEG---FIVGY 82
GLD+G K +G+++SD ++P SVL RKK T+D R+LI F+ E I+G
Sbjct: 21 GLDLGKKTIGIAVSDRGLTFSNPRSVLQRKKLTVDA-----RTLIQIFDRENVGVVIIGL 75
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N ++ Q + F++++ A ++ + +W+E ++ E L +D+ +
Sbjct: 76 PLNMNGSSGPRAQATRTFVNNMEA---YTEIPFVFWDERLSTIAAERSLLEMDVSRAKRA 132
Query: 142 TILDKFAAVGILQEYLDNANRKVNLK 167
T +D AA ILQ L NR NL
Sbjct: 133 TRIDSAAAAFILQGAL---NRIQNLH 155
>gi|346993933|ref|ZP_08862005.1| Holliday junction resolvase-like protein [Ruegeria sp. TW15]
Length = 154
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 6/137 (4%)
Query: 24 FLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYP 83
+GLD+G+K +G+++SD +A+PL + RKK T+D + ++++ + G ++G P
Sbjct: 19 LMGLDLGEKTIGVAVSDRMRGVATPLETVRRKKFTLD--SARLIEIVTDREIGGIVLGLP 76
Query: 84 FNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
N + Q + F +L+ +L D+ +W+E ++ E L D
Sbjct: 77 RNMDGSEGPRCQSTRAFARNLA---RLTDLPIGFWDERLSTVAAEKALLEADTTRKRRGQ 133
Query: 143 ILDKFAAVGILQEYLDN 159
++D AA ILQ LD
Sbjct: 134 VIDHVAAGYILQGALDR 150
>gi|313888091|ref|ZP_07821765.1| RNAse H domain protein, YqgF family [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312845781|gb|EFR33168.1| RNAse H domain protein, YqgF family [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 138
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 67/140 (47%), Gaps = 6/140 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
+ LGLDVGD ++G++ISD A PL + R+ N I E +I E N+E +VG
Sbjct: 3 KILGLDVGDVWIGVAISDALMLTAQPLMTIKRESNKIAY--EKIHEIIKENNVEKVVVGL 60
Query: 83 PFNRQQNAA-DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + +V F + L K+E Y +E T+ E +L + K
Sbjct: 61 PKNMNNTIGPQSEKVIKFAEKLKNKFKVE---IEYVDERMTTLMAEQVLIEGSVRRENRK 117
Query: 142 TILDKFAAVGILQEYLDNAN 161
+DK AA ILQ YLD N
Sbjct: 118 KYIDKIAATYILQSYLDRIN 137
>gi|25012082|ref|NP_736477.1| Holliday junction resolvase-like protein [Streptococcus agalactiae
NEM316]
gi|421532895|ref|ZP_15979237.1| Holliday junction resolvase-like protein [Streptococcus agalactiae
STIR-CD-17]
gi|424048536|ref|ZP_17786087.1| Holliday junction resolvase-like protein [Streptococcus agalactiae
ZQ0910]
gi|54039588|sp|P67493.1|RUVX_STRA5 RecName: Full=Putative Holliday junction resolvase
gi|54042292|sp|P67492.1|RUVX_STRA3 RecName: Full=Putative Holliday junction resolvase
gi|118597222|sp|Q3JYN4.2|RUVX_STRA1 RecName: Full=Putative Holliday junction resolvase
gi|24413626|emb|CAD47703.1| Unknown [Streptococcus agalactiae NEM316]
gi|389650001|gb|EIM71472.1| Holliday junction resolvase-like protein [Streptococcus agalactiae
ZQ0910]
gi|403641810|gb|EJZ02724.1| Holliday junction resolvase-like protein [Streptococcus agalactiae
STIR-CD-17]
Length = 139
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ + + + + L+ E+ ++ F+VG
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEESGNFGFDRLAELVKEYKVDKFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + V+ D +L ++ Y +E T+ E +L+ D+ + K
Sbjct: 62 PKNMNNTSGPRVEASQAYGD--KITELFNLPVEYQDERLTTVQAERMLVEQADISRGKRK 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 120 KVIDKLAAQLILQNYLD 136
>gi|218680912|ref|ZP_03528809.1| Holliday junction resolvase YqgF [Rhizobium etli CIAT 894]
Length = 144
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 18 VSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEG 77
++ R GLD+G K +GLS+SD + A+P V+ R K TID A+ + + G
Sbjct: 13 LAPRQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRVKFTID--AQALLDFAAAEKVAG 70
Query: 78 FIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH 136
FI+G P N +A VQ + F+ ++ L + YW+E ++ E L +D+
Sbjct: 71 FIIGLPMNMDGSAGPRVQATRAFVRNMEQKTAL---PFVYWDERLSTVAAERTLLEMDVS 127
Query: 137 PVEYKTILDKFAAVGIL 153
+ +D AA IL
Sbjct: 128 RAKRAERIDSAAASFIL 144
>gi|330814160|ref|YP_004358399.1| Holliday junction resolvase [Candidatus Pelagibacter sp. IMCC9063]
gi|327487255|gb|AEA81660.1| putative Holliday junction resolvase [Candidatus Pelagibacter sp.
IMCC9063]
Length = 156
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 72/142 (50%), Gaps = 6/142 (4%)
Query: 18 VSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEG 77
+++ R LG+D G + VG++I DP + IA+P + KK + + E+ +I E N++G
Sbjct: 16 ITEGSRLLGIDPGKRNVGIAICDPSHLIATPYETIQAKK--LKNLLEELDKIIIENNIKG 73
Query: 78 FIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH 136
+VG+P N Q K F+ ++ K + W+E +S G + L ++
Sbjct: 74 IVVGHPINMDGTEGPRSQSTKDFVKNII---KHTHLPVTLWDERLSSVGAFKSMQDLGIN 130
Query: 137 PVEYKTILDKFAAVGILQEYLD 158
K LD+ +A ILQ ++D
Sbjct: 131 SSSKKDKLDENSAAFILQGFID 152
>gi|421589212|ref|ZP_16034392.1| Holliday junction resolvase-like protein [Rhizobium sp. Pop5]
gi|403705919|gb|EJZ21341.1| Holliday junction resolvase-like protein [Rhizobium sp. Pop5]
Length = 164
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 6/134 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+G K +GLS+SD + A+P V+ R K T D A+ + + GF++G P N
Sbjct: 21 GLDLGTKTIGLSMSDLGRRFATPRPVIRRVKFTND--AQALLDFAAAEKIGGFVIGLPMN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
+A VQ + F+ ++ L + YW+E ++ E L +D+ + +
Sbjct: 79 MDGSAGPRVQATRAFVRNMEQKTAL---PFVYWDERLSTVAAERALLEMDVSRAKRAERI 135
Query: 145 DKFAAVGILQEYLD 158
D AA ILQ LD
Sbjct: 136 DSAAASFILQGALD 149
>gi|385260786|ref|ZP_10038927.1| RNAse H domain protein, YqgF family [Streptococcus sp. SK140]
gi|385190731|gb|EIF38170.1| RNAse H domain protein, YqgF family [Streptococcus sp. SK140]
Length = 139
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ ++ E + L+ + ++ FIVG
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGQFGFERLKELVETYKVDRFIVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTSKGVE-LLLNPLDLHPV 138
P N + V+ + KLE+ + Y +E T+ E +L+ D+
Sbjct: 62 PKNMNNTSGPRVEA-----SQAYGAKLEELFGLPVEYQDERLTTVAAERMLIEQADISRN 116
Query: 139 EYKTILDKFAAVGILQEYLD 158
+ K ++DK AA ILQ YLD
Sbjct: 117 KRKKVIDKLAAQLILQNYLD 136
>gi|153854408|ref|ZP_01995686.1| hypothetical protein DORLON_01681 [Dorea longicatena DSM 13814]
gi|149752934|gb|EDM62865.1| RNAse H domain protein, YqgF family [Dorea longicatena DSM 13814]
Length = 146
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 3/138 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRK-KNTIDLMAEDFRSLISEFNLEGFIVG 81
R +GLD G K VG+++SDP A + + RK +N + +LI E+ + ++G
Sbjct: 4 RIMGLDYGSKTVGVAVSDPLGITAQGVETICRKDENKLRKTCARIEALIEEYQVTKIVLG 63
Query: 82 YPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P + + D + + ++ K+ ++ W+E T+ E L + + K
Sbjct: 64 LPKHMNNDIGDRAEKSMAFGEM--LKRRTGLEVVMWDERLTTVEAERTLIENKVRREDRK 121
Query: 142 TILDKFAAVGILQEYLDN 159
+DK AAV ILQ YLD+
Sbjct: 122 KYIDKIAAVFILQGYLDS 139
>gi|441513481|ref|ZP_20995311.1| putative Holliday junction resolvase [Gordonia amicalis NBRC
100051]
gi|441451779|dbj|GAC53272.1| putative Holliday junction resolvase [Gordonia amicalis NBRC
100051]
Length = 149
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 73/141 (51%), Gaps = 6/141 (4%)
Query: 20 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKN-TIDLMAEDFRSLISEFNLEGF 78
+RGR LG+DVG +G+S+ DP +A+P+ + R + DL + L++E+ G
Sbjct: 10 RRGRRLGIDVGSVRIGVSVCDPDGILATPVETVRRTPSAATDL--DRIVDLVNEYEAIGV 67
Query: 79 IVGYPFNRQQNAADAVQV-KLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHP 137
++G P + A + + F D L+ +++ + + +E FT+ + L+
Sbjct: 68 VIGLPKTLKNTTGVAAETARAFGDRLA--ERIAPAEVHWQDERFTTVTAQQALHASGRSV 125
Query: 138 VEYKTILDKFAAVGILQEYLD 158
+ ++D+ AAV ILQ +LD
Sbjct: 126 KSSRGVIDQAAAVAILQGWLD 146
>gi|225574862|ref|ZP_03783472.1| hypothetical protein RUMHYD_02940 [Blautia hydrogenotrophica DSM
10507]
gi|225037936|gb|EEG48182.1| RNAse H domain protein, YqgF family [Blautia hydrogenotrophica DSM
10507]
Length = 152
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 63/137 (45%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRK-KNTIDLMAEDFRSLISEFNLEGFIVG 81
R LGLD G K VG+++SDP A + ++ RK +N + +LI E+ +E ++G
Sbjct: 2 RILGLDFGSKTVGVAVSDPLGLTAQGVEIIRRKSENKLRQTLARIEALIQEYEVETLVLG 61
Query: 82 YPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N D Q L D+ + + W+E T+ L + K
Sbjct: 62 LPKNMNNTMGDRAQKSLEFRDMLVRRT--GLPVVMWDERLTTVEANRTLMESGVRRENRK 119
Query: 142 TILDKFAAVGILQEYLD 158
+D+ AA+ ILQ YLD
Sbjct: 120 DYVDELAAIFILQGYLD 136
>gi|431112309|ref|ZP_19497685.1| RNAse H-fold protein YqgF [Enterococcus faecium E1613]
gi|430569263|gb|ELB08280.1| RNAse H-fold protein YqgF [Enterococcus faecium E1613]
Length = 143
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 74/143 (51%), Gaps = 3/143 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG+++SDP A + ++ + + + + L++++ ++ F+VG
Sbjct: 2 RVMGLDVGSKTVGVAVSDPFGWTAQGVEIIRINEAEEEFGFDRLKELVTQYEVDRFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + + + + K+L + Y +E T+ E +L+ + + K
Sbjct: 62 PKNMNNSIGPRAEASMSYGE--KIKELFSLPVDYQDERLTTVQAERMLVEQANTSRAKRK 119
Query: 142 TILDKFAAVGILQEYLDNANRKV 164
++DK AAV ILQ YLD + +++
Sbjct: 120 KVIDKLAAVMILQNYLDGSGKQL 142
>gi|171778528|ref|ZP_02919655.1| hypothetical protein STRINF_00507 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|374338946|ref|YP_005095666.1| putative Holliday junction resolvase [Streptococcus macedonicus
ACA-DC 198]
gi|171282751|gb|EDT48175.1| RNAse H domain protein, YqgF family [Streptococcus infantarius
subsp. infantarius ATCC BAA-102]
gi|372285066|emb|CCF03400.1| putative Holliday junction resolvase [Streptococcus macedonicus
ACA-DC 198]
Length = 139
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 72/138 (52%), Gaps = 5/138 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A + ++ + + E L+ ++ ++ F+VG
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGVEIIRIDEEAGEFGFERLGELVKQYKVDKFVVGL 61
Query: 83 PFNRQQNAADAVQV-KLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEY 140
P N V+ K++ D ++ KL ++ Y +E T+ E +L+ D+ +
Sbjct: 62 PKNMNNTEGPRVEASKVYGDKIN---KLFNIPVDYQDERLTTVQAERMLVEQADISRGKR 118
Query: 141 KTILDKFAAVGILQEYLD 158
K ++DK AA ILQ YLD
Sbjct: 119 KKVIDKLAAQLILQNYLD 136
>gi|414157723|ref|ZP_11414019.1| RNAse H-fold protein YqgF [Streptococcus sp. F0441]
gi|410871641|gb|EKS19588.1| RNAse H-fold protein YqgF [Streptococcus sp. F0441]
Length = 139
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ ++ + + L+ + +E F+VG
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGQFGFDRIKELVDSYKVERFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + V+ + K+L + Y +E T+ E +L+ D+ + K
Sbjct: 62 PKNMNNTSGPRVEASQAYG--AKLKELFGLPVDYQDERLTTVAAERMLIEQADISRNKRK 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 120 KVIDKLAAQLILQNYLD 136
>gi|228478096|ref|ZP_04062707.1| conserved hypothetical protein [Streptococcus salivarius SK126]
gi|228250276|gb|EEK09529.1| conserved hypothetical protein [Streptococcus salivarius SK126]
Length = 139
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 73/143 (51%), Gaps = 15/143 (10%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDF-----RSLISEFNLEG 77
R +GLDVG K VG++ISDP A + ++ ID AE+F L+ E+ +E
Sbjct: 2 RVMGLDVGSKTVGVAISDPLGFTAQGVEII-----KIDEEAEEFGFDRLGELVKEYKVEK 56
Query: 78 FIVGYPFNRQQNAADAVQV-KLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDL 135
F+VG P N V+ K + D + K++ + Y +E T+ E +L+ D+
Sbjct: 57 FVVGLPKNMNNTEGPRVEASKAYGDKI---KEIFGIPVDYQDERLTTVQAERMLVEQADI 113
Query: 136 HPVEYKTILDKFAAVGILQEYLD 158
+ K ++DK AA ILQ YLD
Sbjct: 114 SRGKRKKVIDKLAAQLILQNYLD 136
>gi|422877505|ref|ZP_16923975.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1056]
gi|332360144|gb|EGJ37958.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1056]
Length = 139
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ + + E L+ E+ ++ F++G
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLSELVKEYKVDKFVIGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + V+ A +L + Y +E T+ E +L+ D+ + K
Sbjct: 62 PKNMNNTSGPRVEASQAYGQRIA--ELFGLPVDYQDERLTTVAAERMLVEQADISRSKRK 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 120 KVIDKLAAQLILQNYLD 136
>gi|422822645|ref|ZP_16870838.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK353]
gi|324989653|gb|EGC21597.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK353]
Length = 139
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ ++ + E L+ E+ ++ F++G
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEDKGEFGLERLGELVKEYKVDKFVIGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + V+ A +L + Y +E T+ E +L+ D+ + K
Sbjct: 62 PKNMNNTSGPRVEASQAYGQRIA--ELFGLPVDYQDERLTTVAAERMLVEQADISRSKRK 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 120 KVIDKLAAQLILQNYLD 136
>gi|99080808|ref|YP_612962.1| Holliday junction resolvase-like protein [Ruegeria sp. TM1040]
gi|124107444|sp|Q1GI16.1|RUVX_SILST RecName: Full=Putative Holliday junction resolvase
gi|99037088|gb|ABF63700.1| Holliday junction resolvase YqgF [Ruegeria sp. TM1040]
Length = 157
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 68/136 (50%), Gaps = 6/136 (4%)
Query: 24 FLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYP 83
+GLD G+K +G+++SD +A+PL + RKK T+D + +I+ ++ G ++G P
Sbjct: 19 LVGLDFGEKTIGVAVSDRIGAVATPLETIRRKKFTLD--SNRLLEIIAGRDINGILLGLP 76
Query: 84 FNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
N + Q + F +LS ++ D+ +W+E ++ E L D
Sbjct: 77 RNMDGSEGPRCQSTRAFARNLS---RVTDLPIGFWDERLSTVAAERALLEADTSRKRRAE 133
Query: 143 ILDKFAAVGILQEYLD 158
++D AA ILQ LD
Sbjct: 134 VIDHVAASYILQGALD 149
>gi|288870608|ref|ZP_06114688.2| putative holliday junction resolvase [Clostridium hathewayi DSM
13479]
gi|288866578|gb|EFC98876.1| putative holliday junction resolvase [Clostridium hathewayi DSM
13479]
Length = 161
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 5/141 (3%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRK-KNTIDLMAEDFRSLISEFNLEGFI 79
R R +GLD G K VG+++SD A L + R+ +N + LI E+ +E +
Sbjct: 15 RMRIMGLDYGSKTVGVAVSDSLGLTAQALETITREDENKLRKTCARIEELIREYEIETIV 74
Query: 80 VGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
+GYP N D V+ + F L ++ + W+E T+ E +L +
Sbjct: 75 LGYPKNMNNTLGDRVEKTESFKAML---ERRTGLPVVLWDERLTTVQSERILQESGVRRE 131
Query: 139 EYKTILDKFAAVGILQEYLDN 159
K ++DK AA ILQ YLD+
Sbjct: 132 NRKAVIDKVAAGLILQGYLDS 152
>gi|331091336|ref|ZP_08340176.1| Holliday junction resolvase [Lachnospiraceae bacterium 2_1_46FAA]
gi|330404497|gb|EGG84041.1| Holliday junction resolvase [Lachnospiraceae bacterium 2_1_46FAA]
Length = 142
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 3/138 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKK-NTIDLMAEDFRSLISEFNLEGFIVG 81
R +GLD G K VG++ISD A + + RK+ N + +LI E+ ++ ++G
Sbjct: 2 RIMGLDYGSKTVGVAISDALCLTAQGIETIQRKEENKLRKTLARIETLIKEYEVDKIVLG 61
Query: 82 YPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
+P + + D + L D+ ++ ++ W+E T+ E L ++ E K
Sbjct: 62 FPKHMNNDIGDRAEKSLAFKDM--LERRTGLEVIMWDERLTTVEAERTLIESNVRREERK 119
Query: 142 TILDKFAAVGILQEYLDN 159
+DK AA+ ILQ YLD+
Sbjct: 120 KYVDKIAAIFILQGYLDS 137
>gi|227552124|ref|ZP_03982173.1| crossover junction endodeoxyribonuclease [Enterococcus faecium
TX1330]
gi|257882634|ref|ZP_05662287.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|257886706|ref|ZP_05666359.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
gi|257894866|ref|ZP_05674519.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
gi|257895281|ref|ZP_05674934.1| conserved hypothetical protein [Enterococcus faecium Com12]
gi|257897895|ref|ZP_05677548.1| conserved hypothetical protein [Enterococcus faecium Com15]
gi|293553141|ref|ZP_06673779.1| conserved hypothetical protein [Enterococcus faecium E1039]
gi|293568771|ref|ZP_06680085.1| conserved hypothetical protein [Enterococcus faecium E1071]
gi|293571039|ref|ZP_06682081.1| conserved hypothetical protein [Enterococcus faecium E980]
gi|406580085|ref|ZP_11055306.1| Holliday junction resolvase-like protein [Enterococcus sp. GMD4E]
gi|406584578|ref|ZP_11059605.1| Holliday junction resolvase-like protein [Enterococcus sp. GMD2E]
gi|406590979|ref|ZP_11065310.1| Holliday junction resolvase-like protein [Enterococcus sp. GMD1E]
gi|410936690|ref|ZP_11368553.1| Holliday junction resolvase-like protein [Enterococcus sp. GMD5E]
gi|424795997|ref|ZP_18221786.1| RNAse H domain protein, YqgF family [Enterococcus faecium S447]
gi|424857232|ref|ZP_18281407.1| RNAse H domain protein, YqgF family [Enterococcus faecium R499]
gi|424945397|ref|ZP_18361094.1| RNAse H domain protein, YqgF family [Enterococcus faecium R496]
gi|424957592|ref|ZP_18372308.1| RNAse H domain protein, YqgF family [Enterococcus faecium R446]
gi|424959818|ref|ZP_18374378.1| RNAse H domain protein, YqgF family [Enterococcus faecium P1986]
gi|424968238|ref|ZP_18381878.1| RNAse H domain protein, YqgF family [Enterococcus faecium P1140]
gi|424993525|ref|ZP_18405513.1| RNAse H domain protein, YqgF family [Enterococcus faecium ERV168]
gi|424997809|ref|ZP_18409541.1| RNAse H domain protein, YqgF family [Enterococcus faecium ERV165]
gi|425002525|ref|ZP_18413949.1| RNAse H domain protein, YqgF family [Enterococcus faecium ERV161]
gi|425005243|ref|ZP_18416506.1| RNAse H domain protein, YqgF family [Enterococcus faecium ERV102]
gi|425009814|ref|ZP_18420806.1| RNAse H domain protein, YqgF family [Enterococcus faecium E422]
gi|425018673|ref|ZP_18429093.1| RNAse H domain protein, YqgF family [Enterococcus faecium C621]
gi|425033726|ref|ZP_18438674.1| RNAse H domain protein, YqgF family [Enterococcus faecium 515]
gi|425055307|ref|ZP_18458787.1| RNAse H domain protein, YqgF family [Enterococcus faecium 505]
gi|425057127|ref|ZP_18460557.1| RNAse H domain protein, YqgF family [Enterococcus faecium 504]
gi|430819474|ref|ZP_19438126.1| RNAse H-fold protein YqgF [Enterococcus faecium E0045]
gi|430825925|ref|ZP_19444123.1| RNAse H-fold protein YqgF [Enterococcus faecium E0164]
gi|430828020|ref|ZP_19446150.1| RNAse H-fold protein YqgF [Enterococcus faecium E0269]
gi|430834341|ref|ZP_19452348.1| YqgF family RNAse H domain-containing protein [Enterococcus faecium
E0679]
gi|430835393|ref|ZP_19453383.1| RNAse H-fold protein YqgF [Enterococcus faecium E0680]
gi|430838536|ref|ZP_19456482.1| YqgF family RNAse H domain-containing protein [Enterococcus faecium
E0688]
gi|430841881|ref|ZP_19459798.1| YqgF family RNAse H domain-containing protein [Enterococcus faecium
E1007]
gi|430843610|ref|ZP_19461509.1| YqgF family RNAse H domain-containing protein [Enterococcus faecium
E1050]
gi|430857709|ref|ZP_19475342.1| RNAse H-fold protein YqgF [Enterococcus faecium E1552]
gi|430860641|ref|ZP_19478240.1| RNAse H-fold protein YqgF [Enterococcus faecium E1573]
gi|430882936|ref|ZP_19484141.1| RNAse H-fold protein YqgF [Enterococcus faecium E1575]
gi|431033443|ref|ZP_19491289.1| RNAse H-fold protein YqgF [Enterococcus faecium E1590]
gi|431077742|ref|ZP_19495207.1| RNAse H-fold protein YqgF [Enterococcus faecium E1604]
gi|431149583|ref|ZP_19499441.1| RNAse H-fold protein YqgF [Enterococcus faecium E1620]
gi|431230258|ref|ZP_19502461.1| RNAse H-fold protein YqgF [Enterococcus faecium E1622]
gi|431301479|ref|ZP_19507798.1| RNAse H-fold protein YqgF [Enterococcus faecium E1626]
gi|431514097|ref|ZP_19516145.1| RNAse H-fold protein YqgF [Enterococcus faecium E1634]
gi|431586459|ref|ZP_19520974.1| RNAse H-fold protein YqgF [Enterococcus faecium E1861]
gi|431736986|ref|ZP_19525942.1| RNAse H-fold protein YqgF [Enterococcus faecium E1972]
gi|431741179|ref|ZP_19530086.1| RNAse H-fold protein YqgF [Enterococcus faecium E2039]
gi|431746653|ref|ZP_19535478.1| RNAse H-fold protein YqgF [Enterococcus faecium E2134]
gi|431752425|ref|ZP_19541108.1| RNAse H-fold protein YqgF [Enterococcus faecium E2620]
gi|431762531|ref|ZP_19551093.1| RNAse H-fold protein YqgF [Enterococcus faecium E3548]
gi|431764596|ref|ZP_19553133.1| RNAse H-fold protein YqgF [Enterococcus faecium E4215]
gi|431767653|ref|ZP_19556100.1| RNAse H-fold protein YqgF [Enterococcus faecium E1321]
gi|431775316|ref|ZP_19563589.1| RNAse H-fold protein YqgF [Enterococcus faecium E2560]
gi|431780229|ref|ZP_19568414.1| YqgF family RNAse H domain-containing protein [Enterococcus faecium
E4389]
gi|431781473|ref|ZP_19569620.1| RNAse H-fold protein YqgF [Enterococcus faecium E6012]
gi|431786152|ref|ZP_19574168.1| RNAse H-fold protein YqgF [Enterococcus faecium E6045]
gi|447912163|ref|YP_007393575.1| Putative Holliday junction resolvase [Enterococcus faecium NRRL
B-2354]
gi|227178706|gb|EEI59678.1| crossover junction endodeoxyribonuclease [Enterococcus faecium
TX1330]
gi|257818292|gb|EEV45620.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|257822760|gb|EEV49692.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
gi|257831245|gb|EEV57852.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
gi|257831846|gb|EEV58267.1| conserved hypothetical protein [Enterococcus faecium Com12]
gi|257835807|gb|EEV60881.1| conserved hypothetical protein [Enterococcus faecium Com15]
gi|291588488|gb|EFF20322.1| conserved hypothetical protein [Enterococcus faecium E1071]
gi|291602732|gb|EFF32946.1| conserved hypothetical protein [Enterococcus faecium E1039]
gi|291608879|gb|EFF38159.1| conserved hypothetical protein [Enterococcus faecium E980]
gi|402923728|gb|EJX43993.1| RNAse H domain protein, YqgF family [Enterococcus faecium S447]
gi|402929266|gb|EJX49043.1| RNAse H domain protein, YqgF family [Enterococcus faecium R499]
gi|402935098|gb|EJX54381.1| RNAse H domain protein, YqgF family [Enterococcus faecium R496]
gi|402943150|gb|EJX61662.1| RNAse H domain protein, YqgF family [Enterococcus faecium R446]
gi|402949452|gb|EJX67511.1| RNAse H domain protein, YqgF family [Enterococcus faecium P1986]
gi|402952445|gb|EJX70259.1| RNAse H domain protein, YqgF family [Enterococcus faecium P1140]
gi|402982271|gb|EJX97745.1| RNAse H domain protein, YqgF family [Enterococcus faecium ERV168]
gi|402983167|gb|EJX98586.1| RNAse H domain protein, YqgF family [Enterococcus faecium ERV161]
gi|402985117|gb|EJY00352.1| RNAse H domain protein, YqgF family [Enterococcus faecium ERV165]
gi|402986973|gb|EJY02070.1| RNAse H domain protein, YqgF family [Enterococcus faecium ERV102]
gi|403000985|gb|EJY15067.1| RNAse H domain protein, YqgF family [Enterococcus faecium C621]
gi|403001838|gb|EJY15858.1| RNAse H domain protein, YqgF family [Enterococcus faecium E422]
gi|403008743|gb|EJY22235.1| RNAse H domain protein, YqgF family [Enterococcus faecium 515]
gi|403034179|gb|EJY45645.1| RNAse H domain protein, YqgF family [Enterococcus faecium 505]
gi|403041039|gb|EJY52079.1| RNAse H domain protein, YqgF family [Enterococcus faecium 504]
gi|404454672|gb|EKA01584.1| Holliday junction resolvase-like protein [Enterococcus sp. GMD4E]
gi|404463930|gb|EKA09505.1| Holliday junction resolvase-like protein [Enterococcus sp. GMD2E]
gi|404468561|gb|EKA13496.1| Holliday junction resolvase-like protein [Enterococcus sp. GMD1E]
gi|410734720|gb|EKQ76638.1| Holliday junction resolvase-like protein [Enterococcus sp. GMD5E]
gi|430440546|gb|ELA50793.1| RNAse H-fold protein YqgF [Enterococcus faecium E0045]
gi|430445633|gb|ELA55363.1| RNAse H-fold protein YqgF [Enterococcus faecium E0164]
gi|430484101|gb|ELA61136.1| RNAse H-fold protein YqgF [Enterococcus faecium E0269]
gi|430485572|gb|ELA62478.1| YqgF family RNAse H domain-containing protein [Enterococcus faecium
E0679]
gi|430489384|gb|ELA65998.1| RNAse H-fold protein YqgF [Enterococcus faecium E0680]
gi|430491778|gb|ELA68230.1| YqgF family RNAse H domain-containing protein [Enterococcus faecium
E0688]
gi|430493699|gb|ELA69990.1| YqgF family RNAse H domain-containing protein [Enterococcus faecium
E1007]
gi|430497469|gb|ELA73506.1| YqgF family RNAse H domain-containing protein [Enterococcus faecium
E1050]
gi|430546919|gb|ELA86861.1| RNAse H-fold protein YqgF [Enterococcus faecium E1552]
gi|430552039|gb|ELA91789.1| RNAse H-fold protein YqgF [Enterococcus faecium E1573]
gi|430556493|gb|ELA95991.1| RNAse H-fold protein YqgF [Enterococcus faecium E1575]
gi|430564544|gb|ELB03728.1| RNAse H-fold protein YqgF [Enterococcus faecium E1590]
gi|430566157|gb|ELB05278.1| RNAse H-fold protein YqgF [Enterococcus faecium E1604]
gi|430574244|gb|ELB13022.1| RNAse H-fold protein YqgF [Enterococcus faecium E1622]
gi|430575472|gb|ELB14188.1| RNAse H-fold protein YqgF [Enterococcus faecium E1620]
gi|430580669|gb|ELB19136.1| RNAse H-fold protein YqgF [Enterococcus faecium E1626]
gi|430586353|gb|ELB24614.1| RNAse H-fold protein YqgF [Enterococcus faecium E1634]
gi|430593637|gb|ELB31623.1| RNAse H-fold protein YqgF [Enterococcus faecium E1861]
gi|430599362|gb|ELB37068.1| RNAse H-fold protein YqgF [Enterococcus faecium E1972]
gi|430602290|gb|ELB39868.1| RNAse H-fold protein YqgF [Enterococcus faecium E2039]
gi|430608555|gb|ELB45801.1| RNAse H-fold protein YqgF [Enterococcus faecium E2134]
gi|430613916|gb|ELB50915.1| RNAse H-fold protein YqgF [Enterococcus faecium E2620]
gi|430625223|gb|ELB61873.1| RNAse H-fold protein YqgF [Enterococcus faecium E3548]
gi|430630606|gb|ELB66961.1| RNAse H-fold protein YqgF [Enterococcus faecium E1321]
gi|430630736|gb|ELB67085.1| RNAse H-fold protein YqgF [Enterococcus faecium E4215]
gi|430640708|gb|ELB76542.1| YqgF family RNAse H domain-containing protein [Enterococcus faecium
E4389]
gi|430643032|gb|ELB78788.1| RNAse H-fold protein YqgF [Enterococcus faecium E2560]
gi|430646225|gb|ELB81719.1| RNAse H-fold protein YqgF [Enterococcus faecium E6045]
gi|430649418|gb|ELB84795.1| RNAse H-fold protein YqgF [Enterococcus faecium E6012]
gi|445187872|gb|AGE29514.1| Putative Holliday junction resolvase [Enterococcus faecium NRRL
B-2354]
Length = 143
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 74/143 (51%), Gaps = 3/143 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG+++SDP A + ++ + + + + L++++ ++ F+VG
Sbjct: 2 RVMGLDVGSKTVGVAVSDPFGWTAQGVEIIRINEAEEEFGFDRLKELVAQYEVDRFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + + + + K+L + Y +E T+ E +L+ + + K
Sbjct: 62 PKNMNNSIGPRAEASMSYGE--KIKELFSLPVDYQDERLTTVQAERMLVEQANTSRAKRK 119
Query: 142 TILDKFAAVGILQEYLDNANRKV 164
++DK AAV ILQ YLD + +++
Sbjct: 120 KVIDKLAAVMILQNYLDGSGKQL 142
>gi|222148317|ref|YP_002549274.1| Holliday junction resolvase-like protein [Agrobacterium vitis S4]
gi|254767491|sp|B9JVI8.1|RUVX_AGRVS RecName: Full=Putative Holliday junction resolvase
gi|221735305|gb|ACM36268.1| holliday junction resolvase protein [Agrobacterium vitis S4]
Length = 158
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+G K +GL++SD + ASP +V+ R K T D AE + ++ + F++G P N
Sbjct: 21 GLDLGTKTIGLAMSDLGRRFASPRTVIKRTKFTKD--AEVLLAFAAKEKVAAFVIGLPIN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
++ VQ + F+ A + D+ + YW+E ++ L +D+ + +
Sbjct: 79 MDGSSGPRVQATRAFV---RAMAEKTDIPFVYWDERLSTVAATRALLEMDVSRAKRAERI 135
Query: 145 DKFAAVGILQEYLDN 159
D AA ILQ LD
Sbjct: 136 DSAAASFILQGALDR 150
>gi|422824588|ref|ZP_16872775.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK405]
gi|422825332|ref|ZP_16873511.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK678]
gi|422850590|ref|ZP_16897260.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK150]
gi|422856681|ref|ZP_16903337.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1]
gi|422857416|ref|ZP_16904066.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1057]
gi|422863609|ref|ZP_16910240.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK408]
gi|422866521|ref|ZP_16913146.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1058]
gi|324992637|gb|EGC24558.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK405]
gi|324995834|gb|EGC27745.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK678]
gi|325695338|gb|EGD37238.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK150]
gi|327460040|gb|EGF06379.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1]
gi|327463467|gb|EGF09786.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1057]
gi|327472186|gb|EGF17623.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK408]
gi|327488630|gb|EGF20430.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1058]
Length = 139
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ + + E L+ E+ ++ F++G
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + V+ A +L + Y +E T+ E +L+ D+ + K
Sbjct: 62 PKNMNNTSGPRVEASQAYGQRVA--ELFGLPVDYQDERLTTVAAERMLVEQADISRSKRK 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 120 KVIDKLAAQLILQNYLD 136
>gi|407777635|ref|ZP_11124903.1| Holliday junction resolvase YqgF [Nitratireductor pacificus pht-3B]
gi|407300435|gb|EKF19559.1| Holliday junction resolvase YqgF [Nitratireductor pacificus pht-3B]
Length = 167
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 70/136 (51%), Gaps = 6/136 (4%)
Query: 24 FLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYP 83
+GLD+G K +G+++SD +A+P V+LR+K T D+ E ++ N G ++G P
Sbjct: 31 LVGLDLGTKTIGVAVSDRSLSLANPRPVILRRKFTKDV--EALLEQLAADNAGGIVIGLP 88
Query: 84 FNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
N + Q + F+ +L ++L + A+W+E ++ E L +D+ +
Sbjct: 89 VNMDGSEGPRAQSTRAFVRNL---ERLTPLPVAFWDERMSTIAAERALIEMDVSRRKRAE 145
Query: 143 ILDKFAAVGILQEYLD 158
+D AA ILQ LD
Sbjct: 146 RIDSAAAAFILQGALD 161
>gi|357235815|ref|ZP_09123158.1| Holliday junction resolvase-like protein [Streptococcus criceti
HS-6]
gi|356883797|gb|EHI73997.1| Holliday junction resolvase-like protein [Streptococcus criceti
HS-6]
Length = 139
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 68/140 (48%), Gaps = 9/140 (6%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ + + E L+ ++ +E F+VG
Sbjct: 2 RLMGLDVGSKTVGVAISDPLGFTAQGLEIIPINEAKEEFGFERLEELVKQYKVEKFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTSKGVE-LLLNPLDLHPV 138
P N + V+ KK+ D + Y +E T+ E +L+ D+
Sbjct: 62 PKNMNNTSGPRVEASQIYG-----KKIADLFGLPVEYQDERLTTVQAERMLVEQADVSRG 116
Query: 139 EYKTILDKFAAVGILQEYLD 158
+ K ++DK AA ILQ YLD
Sbjct: 117 KRKKVIDKLAAQLILQNYLD 136
>gi|336436654|ref|ZP_08616366.1| Holliday junction resolvase [Lachnospiraceae bacterium 1_4_56FAA]
gi|336007519|gb|EGN37544.1| Holliday junction resolvase [Lachnospiraceae bacterium 1_4_56FAA]
Length = 138
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 3/138 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKK-NTIDLMAEDFRSLISEFNLEGFIVG 81
R +GLD G K VG++ISD A + + RK+ N + LI E+++E ++G
Sbjct: 2 RIMGLDYGTKTVGVAISDALKITAQGIETIERKEENKLRRTCARIEELIKEYDVEKIVLG 61
Query: 82 YPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
+P + + + + L ++ K+ ++ W+E T+ E L + K
Sbjct: 62 FPKHMNNDIGERAEKALEFGEM--LKRRTGLEVVMWDERLTTVAAERTLIESKVRRENRK 119
Query: 142 TILDKFAAVGILQEYLDN 159
+DK AAV ILQ YLD+
Sbjct: 120 QYIDKIAAVFILQGYLDS 137
>gi|365873622|ref|ZP_09413155.1| RNAse H-fold protein YqgF [Thermanaerovibrio velox DSM 12556]
gi|363983709|gb|EHM09916.1| RNAse H-fold protein YqgF [Thermanaerovibrio velox DSM 12556]
Length = 143
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 75/145 (51%), Gaps = 8/145 (5%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV 80
+GR + LD+G+ +G+++SDP ASPL VL ++ I E R LI + +V
Sbjct: 6 KGRVMALDLGEVRIGVALSDPSRCFASPLEVLKMEEGWI----ERVRELIERNQVSLVVV 61
Query: 81 GYPFNRQQN-AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
G P + +A +V+ ++++L L D++ +E FT+ + L D+ +
Sbjct: 62 GLPRRTDGSLGPEAHRVEAWLEELKGV--LGDVEVTTLDERFTTAIAQRFLLEADMRRDK 119
Query: 140 YKTILDKFAAVGILQEYLDNANRKV 164
K +DK AA +LQ YLD A R V
Sbjct: 120 RKGKVDKVAAAVLLQSYLD-ARRDV 143
>gi|399038945|ref|ZP_10734710.1| RNAse H-fold protein YqgF [Rhizobium sp. CF122]
gi|398063180|gb|EJL54935.1| RNAse H-fold protein YqgF [Rhizobium sp. CF122]
Length = 164
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 6/135 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+G K +GLS+SD + ++P V+ R+K TID A ++ + F++G P N
Sbjct: 21 GLDLGTKTIGLSMSDLGRRFSTPRPVIKREKFTID--AVTLLEFATKEKVAAFVIGLPMN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
+A VQ + F+ ++ L + YW+E ++ E L +D+ + +
Sbjct: 79 MDGSAGPRVQATRAFVRNMEQKTAL---PFVYWDERLSTVAAERALLEMDVSRRQRAERI 135
Query: 145 DKFAAVGILQEYLDN 159
D AA ILQ LD
Sbjct: 136 DSAAASFILQGALDR 150
>gi|338812218|ref|ZP_08624405.1| Holliday junction resolvase YqgF [Acetonema longum DSM 6540]
gi|337275803|gb|EGO64253.1| Holliday junction resolvase YqgF [Acetonema longum DSM 6540]
Length = 142
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 5/141 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R L LDVG+K +G+++SD A + V+ R DL+ LI + E ++G+
Sbjct: 2 RTLALDVGEKRIGVAVSDALGLTAQGVEVIQRSSLEKDLI--RLAELIRHYQAEILLLGF 59
Query: 83 PFNRQQNAAD-AVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + D V+ F L K+ +K W+E ++ E L D+ + +
Sbjct: 60 PKNMNGSVGDRGRSVQEFAALLQ--KRFPAIKIQLWDERLSTIAAERTLLEADVSRAKRR 117
Query: 142 TILDKFAAVGILQEYLDNANR 162
++DK AAV ILQ YLD+ R
Sbjct: 118 QVIDKMAAVFILQGYLDSLPR 138
>gi|288555385|ref|YP_003427320.1| hypothetical protein BpOF4_11875 [Bacillus pseudofirmus OF4]
gi|288546545|gb|ADC50428.1| hypothetical protein BpOF4_11875 [Bacillus pseudofirmus OF4]
Length = 139
Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 4/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K VG+++SD A + L R + + L + ++E ++G
Sbjct: 2 RALGLDVGTKTVGIALSDELGWTAQGIETLRRNEEDPESDFLKIAELAKQNDVETIVIGL 61
Query: 83 PFNRQQNAADAVQVKL-FIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + + + F D L K+ D ++ W+E T+ E +L D+ + K
Sbjct: 62 PKNMNGTIGPSGERCMEFADSL---KEHVDCEFVMWDERLTTVAAERMLVSADVSRKKRK 118
Query: 142 TILDKFAAVGILQEYLD 158
++DK AAV ILQ YLD
Sbjct: 119 KVIDKMAAVMILQGYLD 135
>gi|110633714|ref|YP_673922.1| Holliday junction resolvase YqgF [Chelativorans sp. BNC1]
gi|118597215|sp|Q11IL8.1|RUVX_MESSB RecName: Full=Putative Holliday junction resolvase
gi|110284698|gb|ABG62757.1| Holliday junction resolvase YqgF [Chelativorans sp. BNC1]
Length = 160
Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 71/144 (49%), Gaps = 7/144 (4%)
Query: 17 KVSKRGRFL-GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNL 75
K GR L GLD+G K +G++ISD A+P + L RKK D A+ L+S N
Sbjct: 11 KARAYGRPLAGLDLGTKTIGVAISDLGLSFATPRAYLPRKKFQED--AKALLHLLSRENA 68
Query: 76 EGFIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLD 134
G IVG P N + Q + F+ +L + L + +A+W+E ++ E L +D
Sbjct: 69 GGVIVGLPINMDGSEGPRAQSTRAFVRNL---QPLTKLPFAFWDERLSTVAAERALIEMD 125
Query: 135 LHPVEYKTILDKFAAVGILQEYLD 158
+ + +D AA ILQ LD
Sbjct: 126 VSRAKRAQRIDSAAAAFILQGALD 149
>gi|418018822|ref|ZP_12658377.1| Holliday junction resolvase-like protein [Streptococcus salivarius
M18]
gi|421453380|ref|ZP_15902736.1| Resolvase [Streptococcus salivarius K12]
gi|345526264|gb|EGX29576.1| Holliday junction resolvase-like protein [Streptococcus salivarius
M18]
gi|400181689|gb|EJO15956.1| Resolvase [Streptococcus salivarius K12]
Length = 139
Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 73/143 (51%), Gaps = 15/143 (10%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDF-----RSLISEFNLEG 77
R +GLDVG K VG++ISDP A + ++ ID AE+F L+ E+ +E
Sbjct: 2 RVMGLDVGSKTVGVAISDPLGFTAQGVEII-----KIDEEAEEFGFDRLGELVKEYKVEK 56
Query: 78 FIVGYPFNRQQNAADAVQV-KLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDL 135
F+VG P N V+ K + D + K++ + Y +E T+ E +L+ D+
Sbjct: 57 FVVGLPKNMNNTEGPRVEASKAYGDKI---KEIFGIPVDYQDERLTTVQAERMLVEQADV 113
Query: 136 HPVEYKTILDKFAAVGILQEYLD 158
+ K ++DK AA ILQ YLD
Sbjct: 114 SRGKRKKVIDKLAAQLILQNYLD 136
>gi|359792099|ref|ZP_09294922.1| Holliday junction resolvase YqgF [Mesorhizobium alhagi CCNWXJ12-2]
gi|359251783|gb|EHK55109.1| Holliday junction resolvase YqgF [Mesorhizobium alhagi CCNWXJ12-2]
Length = 161
Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 68/134 (50%), Gaps = 6/134 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+GDK +G+++SD A P V++RKK A L+ N ++G P N
Sbjct: 21 GLDLGDKTIGVAVSDRGLSFAHPRPVIVRKK--FSADAAALLDLLRRENTGAVVIGLPVN 78
Query: 86 RQQNAADAVQV-KLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
+ Q + F+ +++ ++ D+ +A+W+E ++ E L +D+ + KT +
Sbjct: 79 MDGSEGPRAQASRAFVRNIA---RMTDLPFAFWDERLSTVAAERTLIEMDMSRAKRKTKI 135
Query: 145 DKFAAVGILQEYLD 158
D AA ILQ LD
Sbjct: 136 DSAAAAFILQGVLD 149
>gi|340796754|gb|AEK70604.1| putative Holliday junction resolvase [Mycobacterium abscessus
subsp. bolletii]
Length = 166
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 76/148 (51%), Gaps = 14/148 (9%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLR--KKNTIDLMAEDFR---SLISEFNL 75
RGR LG+DVG +G+S SDP +A+P+ + R K+++ DFR L+ + ++
Sbjct: 19 RGRRLGVDVGTVRIGISSSDPDGILATPVETVSRDAKEDS------DFRRIAELVEQMSV 72
Query: 76 EGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLD 134
+VG P N R+ + A F +L +++ + +E FT+ + L
Sbjct: 73 VEVVVGLPRNLREGTGSSARDAAGFARELG--ERIAPVPVRLVDERFTTTTAQRSLREAG 130
Query: 135 LHPVEYKTILDKFAAVGILQEYLDNANR 162
+ + + I+D+ AAV ILQ++L+ R
Sbjct: 131 VRSRQQRGIIDQAAAVAILQDWLEQRRR 158
>gi|329766971|ref|ZP_08258499.1| Holliday junction resolvase [Gemella haemolysans M341]
gi|328837696|gb|EGF87321.1| Holliday junction resolvase [Gemella haemolysans M341]
Length = 142
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 1/139 (0%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLD G K +G+++SD A + + + D + + L+ E N+ +VG
Sbjct: 5 RIMGLDYGSKTIGVAVSDLLGLTAQGIETININEQIKDFKIKRIKELVQEHNVGKIVVGL 64
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N + + LF ++ KK+++++ +E T+ G E +L ++ + K
Sbjct: 65 PKNMDNSVGFRGEATLFFVEV-LKKKIKNVEIILQDERLTTMGAERVLLEANVSRKKRKD 123
Query: 143 ILDKFAAVGILQEYLDNAN 161
++DK AAV ILQ YLD N
Sbjct: 124 VIDKMAAVLILQTYLDKLN 142
>gi|417916565|ref|ZP_12560142.1| RNAse H domain protein, YqgF family [Streptococcus mitis bv. 2 str.
SK95]
gi|342829456|gb|EGU63810.1| RNAse H domain protein, YqgF family [Streptococcus mitis bv. 2 str.
SK95]
Length = 139
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ ++ + + L+ + +E F+VG
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGQFGFDRIKELVDSYKVERFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTSKGVE-LLLNPLDLHPV 138
P N + V+ + KLE+ + Y +E T+ E +L+ D+
Sbjct: 62 PKNMNNTSGPRVEAS-----QAYGAKLEELFSLPVEYQDERLTTVAAERMLIEQADISRN 116
Query: 139 EYKTILDKFAAVGILQEYLD 158
+ K ++DK AA ILQ YLD
Sbjct: 117 KRKKVIDKLAAQLILQNYLD 136
>gi|418975591|ref|ZP_13523495.1| RNAse H domain protein, YqgF family [Streptococcus oralis SK1074]
gi|383347574|gb|EID25552.1| RNAse H domain protein, YqgF family [Streptococcus oralis SK1074]
Length = 139
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 9/140 (6%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ ++ + + L+ +++E F+VG
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGQFGFDRIKELVDSYSVERFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTSKGVE-LLLNPLDLHPV 138
P N + V+ + KLE+ + Y +E T+ E +L+ D+
Sbjct: 62 PKNMNNTSGPRVEAS-----QAYGAKLEELFGLPVDYQDERLTTVAAERMLIEQADISRN 116
Query: 139 EYKTILDKFAAVGILQEYLD 158
+ K ++DK AA ILQ YLD
Sbjct: 117 KRKKVIDKLAAQLILQNYLD 136
>gi|125719019|ref|YP_001036152.1| Holliday junction resolvase-like protein [Streptococcus sanguinis
SK36]
gi|167016514|sp|A3CQZ7.1|RUVX_STRSV RecName: Full=Putative Holliday junction resolvase
gi|125498936|gb|ABN45602.1| Holliday junction resolvase, putative [Streptococcus sanguinis
SK36]
Length = 139
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ + + E L+ E+ ++ F++G
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + V+ A +L + Y +E T+ E +L+ D+ + K
Sbjct: 62 PKNMNNTSGPRVEASQAYGQRIA--ELFGLPVDYQDERLTTVAAERMLVEQADISRSKRK 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 120 KVIDKLAAQLILQNYLD 136
>gi|395242018|ref|ZP_10419018.1| Putative Holliday junction resolvase [Lactobacillus pasteurii CRBIP
24.76]
gi|394480766|emb|CCI85258.1| Putative Holliday junction resolvase [Lactobacillus pasteurii CRBIP
24.76]
Length = 142
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 77/144 (53%), Gaps = 7/144 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISD IA L + ++ + + L+ E+ E F++G
Sbjct: 2 RLIGLDVGSKTVGVAISDELGIIAQRLMTIEIDESRHNFGMRTLKKLVREYEPEAFVLGL 61
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTS-KGVELLLNPLDLHPV-E 139
P N ++ ++VQ + F + L+A L Y +E T+ + +L+ +H +
Sbjct: 62 PKNMDGSSGESVQRSQNFGEKLTAKFGL---PVHYCDERLTTIESQRILVEEAGMHDRKK 118
Query: 140 YKTILDKFAAVGILQEYLDNANRK 163
K ++D+ AAV ILQ YLD +NRK
Sbjct: 119 RKEVVDQMAAVLILQSYLD-SNRK 141
>gi|295396921|ref|ZP_06807045.1| crossover junction endodeoxyribonuclease [Aerococcus viridans ATCC
11563]
gi|294974855|gb|EFG50558.1| crossover junction endodeoxyribonuclease [Aerococcus viridans ATCC
11563]
Length = 139
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 72/141 (51%), Gaps = 12/141 (8%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R++GLDVG K VG+++SDP A + ++ + + + LI+E+ +E ++G
Sbjct: 2 RYMGLDVGSKTVGVAVSDPFGWTAQGVEIIPIDEELEEFGLDRLGELIAEYKVEALVLGL 61
Query: 83 PFNRQQNA---ADAVQ--VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHP 137
P N + A+A Q +L ID D+ Y +E T+ E +L D+
Sbjct: 62 PKNMNNSIGPRAEASQKYGQLVIDRF-------DLPVFYQDERLTTVQAERMLIANDVSR 114
Query: 138 VEYKTILDKFAAVGILQEYLD 158
+ K ++DK AAV ILQ YLD
Sbjct: 115 KKRKKVIDKLAAVLILQNYLD 135
>gi|237785597|ref|YP_002906302.1| Holliday junction resolvase-like protein [Corynebacterium
kroppenstedtii DSM 44385]
gi|259495700|sp|C4LIV4.1|RUVX_CORK4 RecName: Full=Putative Holliday junction resolvase
gi|237758509|gb|ACR17759.1| hypothetical protein ckrop_1006 [Corynebacterium kroppenstedtii DSM
44385]
Length = 164
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 76/149 (51%), Gaps = 8/149 (5%)
Query: 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLIS---EFNLEGF 78
GR LGLDVG +G+++SDP +A+P+S + R ED S++ ++++
Sbjct: 17 GRRLGLDVGTVRIGVAVSDPDGILATPVSTVARTTKRRGPDGEDIDSIVQLAHDYSVVEV 76
Query: 79 IVGYPFNRQQNAADAVQVKLFIDDLSATKKLE----DMKYAYWNEGFTSKGVELLLNPLD 134
IVG P +A +V+ + ++LE D+ Y +E T+ + L+
Sbjct: 77 IVGLPRMLDGSAGSSVKHAQDV-GFRIRRRLERDGVDVPIRYVDERMTTVMAQSNLHDAG 135
Query: 135 LHPVEYKTILDKFAAVGILQEYLDNANRK 163
+ E ++++D+ AAV ILQ +LD R+
Sbjct: 136 ISVKEGRSVIDQAAAVEILQTWLDQRQRR 164
>gi|24380413|ref|NP_722368.1| Holliday junction resolvase-like protein [Streptococcus mutans
UA159]
gi|387787003|ref|YP_006252099.1| Holliday junction resolvase-like protein [Streptococcus mutans
LJ23]
gi|397650608|ref|YP_006491135.1| Holliday junction resolvase-like protein [Streptococcus mutans
GS-5]
gi|449864671|ref|ZP_21778529.1| Holliday junction resolvase-like protein [Streptococcus mutans U2B]
gi|449869484|ref|ZP_21780131.1| Holliday junction resolvase-like protein [Streptococcus mutans
8ID3]
gi|449876171|ref|ZP_21782645.1| Holliday junction resolvase-like protein [Streptococcus mutans S1B]
gi|449883059|ref|ZP_21784918.1| Holliday junction resolvase-like protein [Streptococcus mutans
SA38]
gi|449886740|ref|ZP_21786405.1| Holliday junction resolvase-like protein [Streptococcus mutans
SA41]
gi|449893967|ref|ZP_21789022.1| Holliday junction resolvase-like protein [Streptococcus mutans
SF12]
gi|449896281|ref|ZP_21789574.1| Holliday junction resolvase-like protein [Streptococcus mutans
R221]
gi|449904924|ref|ZP_21792924.1| Holliday junction resolvase-like protein [Streptococcus mutans
M230]
gi|449914221|ref|ZP_21795486.1| Holliday junction resolvase-like protein [Streptococcus mutans
15JP3]
gi|449919057|ref|ZP_21797693.1| Holliday junction resolvase-like protein [Streptococcus mutans
1SM1]
gi|449924897|ref|ZP_21799938.1| Holliday junction resolvase-like protein [Streptococcus mutans
4SM1]
gi|449932937|ref|ZP_21803042.1| Holliday junction resolvase-like protein [Streptococcus mutans
3SN1]
gi|449936530|ref|ZP_21804018.1| Holliday junction resolvase-like protein [Streptococcus mutans
2ST1]
gi|449943298|ref|ZP_21806356.1| Holliday junction resolvase-like protein [Streptococcus mutans
11A1]
gi|449947069|ref|ZP_21807180.1| Holliday junction resolvase-like protein [Streptococcus mutans
11SSST2]
gi|449955924|ref|ZP_21809340.1| Holliday junction resolvase-like protein [Streptococcus mutans
4VF1]
gi|449964609|ref|ZP_21811397.1| Holliday junction resolvase-like protein [Streptococcus mutans
15VF2]
gi|449973534|ref|ZP_21814774.1| Holliday junction resolvase-like protein [Streptococcus mutans
11VS1]
gi|449981691|ref|ZP_21817896.1| Holliday junction resolvase-like protein [Streptococcus mutans
5SM3]
gi|449983744|ref|ZP_21818615.1| Holliday junction resolvase-like protein [Streptococcus mutans
NFSM2]
gi|449989450|ref|ZP_21821065.1| Holliday junction resolvase-like protein [Streptococcus mutans
NVAB]
gi|449994786|ref|ZP_21822713.1| Holliday junction resolvase-like protein [Streptococcus mutans A9]
gi|449999935|ref|ZP_21824810.1| Holliday junction resolvase-like protein [Streptococcus mutans N29]
gi|450005610|ref|ZP_21826771.1| Holliday junction resolvase-like protein [Streptococcus mutans
NMT4863]
gi|450010886|ref|ZP_21828848.1| Holliday junction resolvase-like protein [Streptococcus mutans A19]
gi|450023571|ref|ZP_21830686.1| Holliday junction resolvase-like protein [Streptococcus mutans
U138]
gi|450040390|ref|ZP_21836783.1| Holliday junction resolvase-like protein [Streptococcus mutans T4]
gi|450051779|ref|ZP_21841016.1| Holliday junction resolvase-like protein [Streptococcus mutans
NFSM1]
gi|450062440|ref|ZP_21844325.1| Holliday junction resolvase-like protein [Streptococcus mutans
NLML5]
gi|450072830|ref|ZP_21848803.1| Holliday junction resolvase-like protein [Streptococcus mutans M2A]
gi|450076220|ref|ZP_21849757.1| Holliday junction resolvase-like protein [Streptococcus mutans
N3209]
gi|450081123|ref|ZP_21851528.1| Holliday junction resolvase-like protein [Streptococcus mutans N66]
gi|450088219|ref|ZP_21854698.1| Holliday junction resolvase-like protein [Streptococcus mutans
NV1996]
gi|450100385|ref|ZP_21858741.1| Holliday junction resolvase-like protein [Streptococcus mutans SF1]
gi|450106955|ref|ZP_21860768.1| Holliday junction resolvase-like protein [Streptococcus mutans
SF14]
gi|450110650|ref|ZP_21862224.1| Holliday junction resolvase-like protein [Streptococcus mutans SM6]
gi|450116669|ref|ZP_21864609.1| Holliday junction resolvase-like protein [Streptococcus mutans ST1]
gi|450120886|ref|ZP_21865973.1| Holliday junction resolvase-like protein [Streptococcus mutans ST6]
gi|450127807|ref|ZP_21868752.1| Holliday junction resolvase-like protein [Streptococcus mutans U2A]
gi|450139704|ref|ZP_21872631.1| Holliday junction resolvase-like protein [Streptococcus mutans
NLML1]
gi|450144056|ref|ZP_21873805.1| Holliday junction resolvase-like protein [Streptococcus mutans
1ID3]
gi|450153992|ref|ZP_21877490.1| Holliday junction resolvase-like protein [Streptococcus mutans 21]
gi|450159286|ref|ZP_21879364.1| Holliday junction resolvase-like protein [Streptococcus mutans
66-2A]
gi|450171954|ref|ZP_21884310.1| Holliday junction resolvase-like protein [Streptococcus mutans SM4]
gi|450174699|ref|ZP_21884730.1| Holliday junction resolvase-like protein [Streptococcus mutans SM1]
gi|450181414|ref|ZP_21887822.1| Holliday junction resolvase-like protein [Streptococcus mutans 24]
gi|32130029|sp|Q8DRX8.1|RUVX_STRMU RecName: Full=Putative Holliday junction resolvase
gi|24378438|gb|AAN59674.1|AE015030_4 conserved hypothetical protein [Streptococcus mutans UA159]
gi|379133404|dbj|BAL70156.1| Holliday junction resolvase-like protein [Streptococcus mutans
LJ23]
gi|392604177|gb|AFM82341.1| Holliday junction resolvase-like protein [Streptococcus mutans
GS-5]
gi|449149461|gb|EMB53263.1| Holliday junction resolvase-like protein [Streptococcus mutans
11A1]
gi|449151262|gb|EMB55003.1| Holliday junction resolvase-like protein [Streptococcus mutans
1ID3]
gi|449158197|gb|EMB61619.1| Holliday junction resolvase-like protein [Streptococcus mutans
8ID3]
gi|449158377|gb|EMB61794.1| Holliday junction resolvase-like protein [Streptococcus mutans
15JP3]
gi|449159754|gb|EMB63066.1| Holliday junction resolvase-like protein [Streptococcus mutans
1SM1]
gi|449160784|gb|EMB64025.1| Holliday junction resolvase-like protein [Streptococcus mutans
3SN1]
gi|449162189|gb|EMB65341.1| Holliday junction resolvase-like protein [Streptococcus mutans
4SM1]
gi|449165500|gb|EMB68504.1| Holliday junction resolvase-like protein [Streptococcus mutans
2ST1]
gi|449169033|gb|EMB71822.1| Holliday junction resolvase-like protein [Streptococcus mutans
11SSST2]
gi|449170857|gb|EMB73547.1| Holliday junction resolvase-like protein [Streptococcus mutans
4VF1]
gi|449172333|gb|EMB74963.1| Holliday junction resolvase-like protein [Streptococcus mutans
15VF2]
gi|449175587|gb|EMB77993.1| Holliday junction resolvase-like protein [Streptococcus mutans
5SM3]
gi|449179463|gb|EMB81674.1| Holliday junction resolvase-like protein [Streptococcus mutans
11VS1]
gi|449181000|gb|EMB83132.1| Holliday junction resolvase-like protein [Streptococcus mutans
NFSM2]
gi|449182564|gb|EMB84584.1| Holliday junction resolvase-like protein [Streptococcus mutans
NVAB]
gi|449184946|gb|EMB86855.1| Holliday junction resolvase-like protein [Streptococcus mutans A9]
gi|449186355|gb|EMB88190.1| Holliday junction resolvase-like protein [Streptococcus mutans N29]
gi|449188401|gb|EMB90113.1| Holliday junction resolvase-like protein [Streptococcus mutans
NMT4863]
gi|449189873|gb|EMB91493.1| Holliday junction resolvase-like protein [Streptococcus mutans A19]
gi|449193178|gb|EMB94569.1| Holliday junction resolvase-like protein [Streptococcus mutans
U138]
gi|449199031|gb|EMC00116.1| Holliday junction resolvase-like protein [Streptococcus mutans T4]
gi|449201593|gb|EMC02583.1| Holliday junction resolvase-like protein [Streptococcus mutans
NFSM1]
gi|449205780|gb|EMC06510.1| Holliday junction resolvase-like protein [Streptococcus mutans
NLML5]
gi|449210711|gb|EMC11146.1| Holliday junction resolvase-like protein [Streptococcus mutans M2A]
gi|449212804|gb|EMC13155.1| Holliday junction resolvase-like protein [Streptococcus mutans
N3209]
gi|449215600|gb|EMC15782.1| Holliday junction resolvase-like protein [Streptococcus mutans N66]
gi|449216768|gb|EMC16860.1| Holliday junction resolvase-like protein [Streptococcus mutans
NV1996]
gi|449220458|gb|EMC20328.1| Holliday junction resolvase-like protein [Streptococcus mutans SF1]
gi|449222648|gb|EMC22367.1| Holliday junction resolvase-like protein [Streptococcus mutans
SF14]
gi|449224650|gb|EMC24276.1| Holliday junction resolvase-like protein [Streptococcus mutans SM6]
gi|449226773|gb|EMC26264.1| Holliday junction resolvase-like protein [Streptococcus mutans ST1]
gi|449229780|gb|EMC29075.1| Holliday junction resolvase-like protein [Streptococcus mutans ST6]
gi|449230222|gb|EMC29489.1| Holliday junction resolvase-like protein [Streptococcus mutans U2A]
gi|449232649|gb|EMC31752.1| Holliday junction resolvase-like protein [Streptococcus mutans
NLML1]
gi|449238263|gb|EMC37037.1| Holliday junction resolvase-like protein [Streptococcus mutans 21]
gi|449241403|gb|EMC40035.1| Holliday junction resolvase-like protein [Streptococcus mutans
66-2A]
gi|449243271|gb|EMC41716.1| Holliday junction resolvase-like protein [Streptococcus mutans SM4]
gi|449246538|gb|EMC44840.1| Holliday junction resolvase-like protein [Streptococcus mutans 24]
gi|449248155|gb|EMC46416.1| Holliday junction resolvase-like protein [Streptococcus mutans SM1]
gi|449250310|gb|EMC48376.1| Holliday junction resolvase-like protein [Streptococcus mutans
SA38]
gi|449252979|gb|EMC50946.1| Holliday junction resolvase-like protein [Streptococcus mutans S1B]
gi|449253817|gb|EMC51755.1| Holliday junction resolvase-like protein [Streptococcus mutans
SA41]
gi|449255584|gb|EMC53432.1| Holliday junction resolvase-like protein [Streptococcus mutans
SF12]
gi|449258763|gb|EMC56323.1| Holliday junction resolvase-like protein [Streptococcus mutans
M230]
gi|449262464|gb|EMC59913.1| Holliday junction resolvase-like protein [Streptococcus mutans
R221]
gi|449264742|gb|EMC62077.1| Holliday junction resolvase-like protein [Streptococcus mutans U2B]
Length = 139
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG+++SDP A L ++ + + + L+ ++ +E F+VG
Sbjct: 2 RIIGLDVGSKTVGVAVSDPLGFTAQGLEIIPINEAKGEFGFDRLADLVKDYKVEKFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + V+ K+L D+ Y +E T+ E +L+ D+ + K
Sbjct: 62 PKNMNNTSGPRVEASQAYG--KKIKELFDLPVEYQDERLTTVQAERMLVEQADVSRGKRK 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 120 KVIDKLAAQLILQNYLD 136
>gi|417918129|ref|ZP_12561682.1| RNAse H domain protein, YqgF family [Streptococcus parasanguinis
SK236]
gi|342829120|gb|EGU63481.1| RNAse H domain protein, YqgF family [Streptococcus parasanguinis
SK236]
Length = 139
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG+++SDP A L ++ ++ + E L++++ ++ F+VG
Sbjct: 2 RIMGLDVGSKTVGVAVSDPLGFTAQGLEIIQIDEDKKEFGLERLAELVAQYKVDRFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + V+ + + K + Y +E T+ E +L+ D+ + K
Sbjct: 62 PKNMNNTSGPRVEASQAYGAMISEKF--GLPVDYQDERLTTVAAERMLIEQADISRSKRK 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 120 KVIDKLAAQLILQNYLD 136
>gi|450046188|ref|ZP_21838810.1| Holliday junction resolvase-like protein [Streptococcus mutans N34]
gi|449199220|gb|EMC00298.1| Holliday junction resolvase-like protein [Streptococcus mutans N34]
Length = 139
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG+++SDP A L ++ + + + L+ ++ +E F+VG
Sbjct: 2 RIIGLDVGSKTVGVAVSDPLGFTAQGLEIIPINEAKGEFGFDRLADLVKDYKVEKFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + V+ K+L D+ Y +E T+ E +L+ D+ + K
Sbjct: 62 PKNMNNTSGPRVEASQAYG--RKIKELFDLPVEYQDERLTTVQAERMLVEQADVSRGKRK 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 120 KVIDKLAAQLILQNYLD 136
>gi|422880993|ref|ZP_16927449.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK355]
gi|332365435|gb|EGJ43196.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK355]
Length = 139
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ ++ + E L+ E+ ++ F++G
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEDKGEFGLERLGELVKEYKVDKFVIGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + V+ A +L + Y +E T+ E +L+ D+ + +
Sbjct: 62 PKNMNNTSGPRVEASQAYGQRVA--ELFGLPVDYQDERLTTVAAERMLVEQADISRSKRR 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 120 KVIDKLAAQLILQNYLD 136
>gi|423558034|ref|ZP_17534336.1| RNAse H-fold protein YqgF [Bacillus cereus MC67]
gi|401191302|gb|EJQ98324.1| RNAse H-fold protein YqgF [Bacillus cereus MC67]
Length = 137
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 70/140 (50%), Gaps = 8/140 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K VG+++SD A L + + + + L+ ++N++ +VG
Sbjct: 2 RILGLDVGTKTVGVAMSDEMGWTAQGLETIRINEERGNFGFDRISELVKQYNVDKIVVGL 61
Query: 83 PFNRQQNA---ADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
P N +A Q F ++L + L ++ W+E ++ E LL D+ +
Sbjct: 62 PKNMNGTIGPRGEACQ--QFAENL---RNLLQLEVVMWDERLSTMAAERLLISADVSRKK 116
Query: 140 YKTILDKFAAVGILQEYLDN 159
K ++DK AAV ILQ +LD+
Sbjct: 117 RKQVIDKMAAVVILQGFLDS 136
>gi|283781683|ref|YP_003372438.1| Holliday junction resolvase YqgF [Pirellula staleyi DSM 6068]
gi|283440136|gb|ADB18578.1| Holliday junction resolvase YqgF [Pirellula staleyi DSM 6068]
Length = 153
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 6/143 (4%)
Query: 16 RKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNL 75
R+ RGR +G+D G +GL+I+DP+ K ASPL R+ D A F+ + E
Sbjct: 2 RRDEVRGRLIGVDYGTVRIGLAITDPEQKFASPLDNYTRRGGQAD--ARYFQRVAQEERA 59
Query: 76 EGFIVGYPFNRQQNAAD-AVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLD 134
++VG P + + + + + + F L ++L + ++E FTS E +L
Sbjct: 60 AAWVVGLPVHTTGSESQKSTEARQFAKQL---EELTKLPVFLFDERFTSADAEEMLIAAG 116
Query: 135 LHPVEYKTILDKFAAVGILQEYL 157
+ E K+ LDK AA +L +L
Sbjct: 117 MSRKERKSHLDKLAAQILLSAFL 139
>gi|47566574|ref|ZP_00237396.1| conserved hypothetical protein protein TIGR00250 [Bacillus cereus
G9241]
gi|206969800|ref|ZP_03230754.1| conserved hypothetical protein TIGR00250 [Bacillus cereus AH1134]
gi|228941554|ref|ZP_04104103.1| Holliday junction resolvase [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228954671|ref|ZP_04116694.1| Holliday junction resolvase [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228960658|ref|ZP_04122303.1| Holliday junction resolvase [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228974484|ref|ZP_04135051.1| Holliday junction resolvase [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228981078|ref|ZP_04141379.1| Holliday junction resolvase [Bacillus thuringiensis Bt407]
gi|228987638|ref|ZP_04147752.1| Holliday junction resolvase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229048094|ref|ZP_04193667.1| Holliday junction resolvase [Bacillus cereus AH676]
gi|229081651|ref|ZP_04214146.1| Holliday junction resolvase [Bacillus cereus Rock4-2]
gi|229180662|ref|ZP_04308002.1| Holliday junction resolvase [Bacillus cereus 172560W]
gi|229192598|ref|ZP_04319559.1| Holliday junction resolvase [Bacillus cereus ATCC 10876]
gi|296504877|ref|YP_003666577.1| Holliday junction resolvase-like protein [Bacillus thuringiensis
BMB171]
gi|365158821|ref|ZP_09355012.1| RNAse H-fold protein YqgF [Bacillus sp. 7_6_55CFAA_CT2]
gi|384188459|ref|YP_005574355.1| Holliday junction resolvase-like protein [Bacillus thuringiensis
serovar chinensis CT-43]
gi|410676773|ref|YP_006929144.1| putative holliday junction resolvase [Bacillus thuringiensis Bt407]
gi|423385886|ref|ZP_17363142.1| RNAse H-fold protein YqgF [Bacillus cereus BAG1X1-2]
gi|423411818|ref|ZP_17388938.1| RNAse H-fold protein YqgF [Bacillus cereus BAG3O-2]
gi|423426519|ref|ZP_17403550.1| RNAse H-fold protein YqgF [Bacillus cereus BAG3X2-2]
gi|423432396|ref|ZP_17409400.1| RNAse H-fold protein YqgF [Bacillus cereus BAG4O-1]
gi|423437831|ref|ZP_17414812.1| RNAse H-fold protein YqgF [Bacillus cereus BAG4X12-1]
gi|423502927|ref|ZP_17479519.1| RNAse H-fold protein YqgF [Bacillus cereus HD73]
gi|423527757|ref|ZP_17504202.1| RNAse H-fold protein YqgF [Bacillus cereus HuB1-1]
gi|423585135|ref|ZP_17561222.1| RNAse H-fold protein YqgF [Bacillus cereus VD045]
gi|423631110|ref|ZP_17606857.1| RNAse H-fold protein YqgF [Bacillus cereus VD154]
gi|423640534|ref|ZP_17616152.1| RNAse H-fold protein YqgF [Bacillus cereus VD166]
gi|423650250|ref|ZP_17625820.1| RNAse H-fold protein YqgF [Bacillus cereus VD169]
gi|449091354|ref|YP_007423795.1| hypothetical protein HD73_4696 [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|452200850|ref|YP_007480931.1| Putative Holliday junction resolvase YggF [Bacillus thuringiensis
serovar thuringiensis str. IS5056]
gi|47556604|gb|EAL14936.1| conserved hypothetical protein protein TIGR00250 [Bacillus cereus
G9241]
gi|206735488|gb|EDZ52656.1| conserved hypothetical protein TIGR00250 [Bacillus cereus AH1134]
gi|228590905|gb|EEK48763.1| Holliday junction resolvase [Bacillus cereus ATCC 10876]
gi|228602807|gb|EEK60288.1| Holliday junction resolvase [Bacillus cereus 172560W]
gi|228701655|gb|EEL54146.1| Holliday junction resolvase [Bacillus cereus Rock4-2]
gi|228723249|gb|EEL74621.1| Holliday junction resolvase [Bacillus cereus AH676]
gi|228772098|gb|EEM20550.1| Holliday junction resolvase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228778619|gb|EEM26885.1| Holliday junction resolvase [Bacillus thuringiensis Bt407]
gi|228785201|gb|EEM33213.1| Holliday junction resolvase [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228799022|gb|EEM45994.1| Holliday junction resolvase [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228804998|gb|EEM51594.1| Holliday junction resolvase [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228818110|gb|EEM64186.1| Holliday junction resolvase [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|296325929|gb|ADH08857.1| Holliday junction resolvase-like protein [Bacillus thuringiensis
BMB171]
gi|326942168|gb|AEA18064.1| Holliday junction resolvase-like protein [Bacillus thuringiensis
serovar chinensis CT-43]
gi|363626315|gb|EHL77306.1| RNAse H-fold protein YqgF [Bacillus sp. 7_6_55CFAA_CT2]
gi|401103886|gb|EJQ11863.1| RNAse H-fold protein YqgF [Bacillus cereus BAG3O-2]
gi|401111266|gb|EJQ19165.1| RNAse H-fold protein YqgF [Bacillus cereus BAG3X2-2]
gi|401117152|gb|EJQ24990.1| RNAse H-fold protein YqgF [Bacillus cereus BAG4O-1]
gi|401120986|gb|EJQ28782.1| RNAse H-fold protein YqgF [Bacillus cereus BAG4X12-1]
gi|401233778|gb|EJR40264.1| RNAse H-fold protein YqgF [Bacillus cereus VD045]
gi|401264477|gb|EJR70589.1| RNAse H-fold protein YqgF [Bacillus cereus VD154]
gi|401279595|gb|EJR85517.1| RNAse H-fold protein YqgF [Bacillus cereus VD166]
gi|401282668|gb|EJR88567.1| RNAse H-fold protein YqgF [Bacillus cereus VD169]
gi|401635942|gb|EJS53697.1| RNAse H-fold protein YqgF [Bacillus cereus BAG1X1-2]
gi|402451420|gb|EJV83239.1| RNAse H-fold protein YqgF [Bacillus cereus HuB1-1]
gi|402459148|gb|EJV90885.1| RNAse H-fold protein YqgF [Bacillus cereus HD73]
gi|409175902|gb|AFV20207.1| putative holliday junction resolvase [Bacillus thuringiensis Bt407]
gi|449025111|gb|AGE80274.1| hypothetical protein HD73_4696 [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|452106243|gb|AGG03183.1| Putative Holliday junction resolvase YggF [Bacillus thuringiensis
serovar thuringiensis str. IS5056]
Length = 137
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 8/140 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K VG++ISD A L + + + L+ ++N++ +VG
Sbjct: 2 RILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGHFGFDRISELVKQYNVDKIVVGL 61
Query: 83 PFNRQQNAA---DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
P N +A Q F ++L ++L + W+E ++ E LL D+ +
Sbjct: 62 PKNMNGTIGPRGEACQ--QFAENL---RELLQLDVVMWDERLSTMAAERLLISADVSRKK 116
Query: 140 YKTILDKFAAVGILQEYLDN 159
K ++DK AAV ILQ +LD+
Sbjct: 117 RKQVIDKMAAVVILQGFLDS 136
>gi|254512444|ref|ZP_05124511.1| conserved hypothetical protein TIGR00250 [Rhodobacteraceae
bacterium KLH11]
gi|221536155|gb|EEE39143.1| conserved hypothetical protein TIGR00250 [Rhodobacteraceae
bacterium KLH11]
Length = 154
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 70/137 (51%), Gaps = 6/137 (4%)
Query: 24 FLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYP 83
+GLD+G+K +G+++SD +A+PL + RKK T+D + ++++ + G ++G P
Sbjct: 19 LMGLDLGEKTIGVAVSDRMRGVATPLETVRRKKFTLD--SARLIEIVTDREIGGIVLGLP 76
Query: 84 FNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
N + Q + F +L+ +L +++ +W+E ++ E L D
Sbjct: 77 RNMDGSEGPRCQSTRAFARNLT---RLTEVQIGFWDERLSTVAAEKALLEADTTRKRRGQ 133
Query: 143 ILDKFAAVGILQEYLDN 159
++D AA ILQ LD
Sbjct: 134 VIDHVAAGYILQGALDR 150
>gi|408411560|ref|ZP_11182703.1| Putative Holliday junction resolvase [Lactobacillus sp. 66c]
gi|409351615|ref|ZP_11234248.1| Putative Holliday junction resolvase [Lactobacillus equicursoris
CIP 110162]
gi|407874272|emb|CCK84509.1| Putative Holliday junction resolvase [Lactobacillus sp. 66c]
gi|407876641|emb|CCK86306.1| Putative Holliday junction resolvase [Lactobacillus equicursoris
CIP 110162]
Length = 142
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 73/138 (52%), Gaps = 4/138 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K +G+++SDP A P++ + ++ + + L+ E+ +GF++G
Sbjct: 2 RLLGLDVGSKTIGVAVSDPLGITAQPVATIEIDEDRHNFGMRSLKKLVREYEPDGFVLGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHP-VEY 140
P ++ + +D V+ K+ D+ + +E T+ E +L+ +H +
Sbjct: 62 P--KKMDGSDGASVERSQAMADRLKQKFDLPVYFDDERLTTVESERILIEQAGMHDRRQR 119
Query: 141 KTILDKFAAVGILQEYLD 158
K ++D+ AAV ILQ YLD
Sbjct: 120 KKVVDQMAAVLILQNYLD 137
>gi|422861692|ref|ZP_16908332.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK330]
gi|327467925|gb|EGF13415.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK330]
Length = 139
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ + + E L+ E+ ++ F++G
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + V+ A +L + Y +E T+ E +L+ D+ + K
Sbjct: 62 PKNMNNTSGPRVEASQAYGQRIA--ELFGLPVDYQDERLTTVAAERMLVEQADVSRSKRK 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 120 KVIDKLAAQLILQNYLD 136
>gi|417934983|ref|ZP_12578303.1| RNAse H domain protein, YqgF family [Streptococcus mitis bv. 2 str.
F0392]
gi|340771553|gb|EGR94068.1| RNAse H domain protein, YqgF family [Streptococcus mitis bv. 2 str.
F0392]
Length = 139
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ ++ + + L+ + +E F+VG
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIVQINEDQGQFGFDRIKELVDSYKVERFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTSKGVE-LLLNPLDLHPV 138
P N + V+ + KLE+ + Y +E T+ E +L+ D+
Sbjct: 62 PKNMNNTSGPRVEAS-----QAYGAKLEELFSLPVEYQDERLTTVAAERMLIEQADISRN 116
Query: 139 EYKTILDKFAAVGILQEYLD 158
+ K ++DK AA ILQ YLD
Sbjct: 117 KRKKVIDKLAAQLILQNYLD 136
>gi|422849926|ref|ZP_16896602.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK115]
gi|325688814|gb|EGD30822.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK115]
Length = 139
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ + + E L+ E+ ++ F++G
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + V+ A +L + Y +E T+ E +L+ D+ + K
Sbjct: 62 PKNMNNTSGPRVEASQAYGQRVA--ELFGLPVDYQDERLTTVAAERMLVEQADISRNKRK 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 120 KVIDKLAAQLILQNYLD 136
>gi|56963359|ref|YP_175090.1| holliday junction resolvase [Bacillus clausii KSM-K16]
gi|62900942|sp|Q5WHM6.1|RUVX_BACSK RecName: Full=Putative Holliday junction resolvase
gi|56909602|dbj|BAD64129.1| holliday junction resolvase [Bacillus clausii KSM-K16]
Length = 142
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 4/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
+ +GLDVG K +G++ISD A L + R ++ + E LI E +++ ++GY
Sbjct: 2 KTIGLDVGTKTIGVAISDAFGWTAQGLPTIQRSEDDPNRDFEALAQLIKENDVQKVVIGY 61
Query: 83 PFNRQQNAAD-AVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + A + + F L ++ +++ W+E T+ + +L D+ + K
Sbjct: 62 PKNMNGTVGESATRSETFARTL---EQQCNVQTVLWDERLTTAAAQRVLIDADVSRKKRK 118
Query: 142 TILDKFAAVGILQEYLD 158
+DK AAV ILQ YLD
Sbjct: 119 KAVDKMAAVFILQGYLD 135
>gi|428305471|ref|YP_007142296.1| holliday junction resolvase [Crinalium epipsammum PCC 9333]
gi|428247006|gb|AFZ12786.1| Holliday junction resolvase [Crinalium epipsammum PCC 9333]
Length = 157
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 74/144 (51%), Gaps = 8/144 (5%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
LGLDVG K +G++ D IA+ L+ + + + D E RSL+ E ++ +VG P+
Sbjct: 7 LGLDVGSKRIGVAGCDGTGLIATGLTTI--EHTSFDRDIEQLRSLVEERQVQVLVVGLPY 64
Query: 85 NRQQNAA-DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143
+ A +V+ F ++A +L Y +E TS E L+ P K +
Sbjct: 65 SMDGTIGFQAKKVQKFASRVAAALQL---PLEYVDERLTSVHAEQLIIAEKRSPSRNKGL 121
Query: 144 LDKFAAVGILQEYLDNANRKVNLK 167
+D+ AA ILQ++LD +R+ N+K
Sbjct: 122 IDRKAAALILQQWLD--DRRANMK 143
>gi|322388593|ref|ZP_08062193.1| crossover junction endodeoxyribonuclease [Streptococcus infantis
ATCC 700779]
gi|321140513|gb|EFX36018.1| crossover junction endodeoxyribonuclease [Streptococcus infantis
ATCC 700779]
Length = 136
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 69/138 (50%), Gaps = 9/138 (6%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLDVG K VG++ISDP A L ++ ++ + E + L+ + +E F+VG P
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGEFGFERLKELVDTYKVERFVVGLPK 60
Query: 85 NRQQNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTSKGVE-LLLNPLDLHPVEY 140
N + V+ + KLE+ + Y +E T+ E +L+ D+ +
Sbjct: 61 NMNNTSGPRVEAS-----QAYGAKLEELFGLPVEYQDERLTTVAAERMLIEQADISRNKR 115
Query: 141 KTILDKFAAVGILQEYLD 158
K ++DK AA ILQ YLD
Sbjct: 116 KKVIDKLAAQLILQNYLD 133
>gi|118466058|ref|YP_882612.1| Holliday junction resolvase-like protein [Mycobacterium avium 104]
gi|118167345|gb|ABK68242.1| conserved hypothetical protein [Mycobacterium avium 104]
Length = 165
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 5/140 (3%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV 80
RGR LG+DVG +G++ SDP +A+P+ + R ++ L +L++E +V
Sbjct: 19 RGRRLGIDVGSVRIGVACSDPDAVLATPVETVRRDRSGKHL--RRLAALVTELGAVEVVV 76
Query: 81 GYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
G P + A A+ D L+ +++ +E T+ + L + E
Sbjct: 77 GLPRTLADRTGASALDAIDLADQLA--RRIAPTPVRLADERLTTVAAQRSLRAAGVRAKE 134
Query: 140 YKTILDKFAAVGILQEYLDN 159
+ ++D+ AAV ILQ +LD
Sbjct: 135 QRAVIDQAAAVAILQSWLDQ 154
>gi|126653902|ref|ZP_01725749.1| Holliday junction resolvase-like protein [Bacillus sp. B14905]
gi|126589627|gb|EAZ83766.1| Holliday junction resolvase-like protein [Bacillus sp. B14905]
Length = 138
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 72/148 (48%), Gaps = 20/148 (13%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPL-SVLLRKKNT---IDLMAEDFRSLISEFNLEGF 78
R +GLDVG K VG+++SD A + +V + + N ID +AE L+ E+ + F
Sbjct: 2 RIMGLDVGSKTVGVAVSDALGWTAQGIETVKIDEANGEFGIDRIAE----LVKEYAITEF 57
Query: 79 IVGYPFNRQQNAADAVQVK-----LFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPL 133
+VG+P N + L + S KL W+E T+ E +L
Sbjct: 58 VVGFPKNMNNTVGPRGEASENYKTLLEETFSLPVKL-------WDERLTTMAAERMLIEA 110
Query: 134 DLHPVEYKTILDKFAAVGILQEYLDNAN 161
D+ + K ++DK AAV ILQ YLD+ N
Sbjct: 111 DVSRKKRKQVIDKMAAVMILQGYLDSKN 138
>gi|340354715|ref|ZP_08677416.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Sporosarcina newyorkensis 2681]
gi|339623114|gb|EGQ27620.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Sporosarcina newyorkensis 2681]
Length = 139
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 66/143 (46%), Gaps = 14/143 (9%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISD A + + + E L E+ + F+VGY
Sbjct: 2 RIMGLDVGTKTVGIAISDGLGWTAQGIETIKINEEEGLFGLERIEELTKEYEVHEFVVGY 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAY------WNEGFTSKGVELLLNPLDLH 136
P N Q ++ + E ++ + W+E T+ E +L D+
Sbjct: 62 PKNMNNTIGPRGQ--------ASEQYAESLREKFGFPVVLWDERLTTMAAERVLIEADVS 113
Query: 137 PVEYKTILDKFAAVGILQEYLDN 159
+ K+++DK AAV ILQ YLD+
Sbjct: 114 RKKRKSVIDKMAAVMILQGYLDS 136
>gi|302389909|ref|YP_003825730.1| Holliday junction resolvase YqgF [Thermosediminibacter oceani DSM
16646]
gi|302200537|gb|ADL08107.1| Holliday junction resolvase YqgF [Thermosediminibacter oceani DSM
16646]
Length = 145
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 4/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG+K +G+++SD A + V+ R D+ E ++ + ++ I+G
Sbjct: 2 RILGLDVGNKRIGVAVSDELGITAQGVGVIERGDVKRDI--ERISEIVKRYQVKKVIIGL 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N N Q +L D + ++ YW+E ++ E +L D+ + K
Sbjct: 60 PLN--MNGTLGPQGQLVKDFGEKLRHSLNLDVEYWDERLSTVTAEKVLIDADISRRKRKG 117
Query: 143 ILDKFAAVGILQEYLDN 159
++DK +A+ ILQ +LD+
Sbjct: 118 VIDKLSAIVILQSFLDS 134
>gi|444431930|ref|ZP_21227090.1| putative Holliday junction resolvase [Gordonia soli NBRC 108243]
gi|443887104|dbj|GAC68811.1| putative Holliday junction resolvase [Gordonia soli NBRC 108243]
Length = 143
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 70/140 (50%), Gaps = 6/140 (4%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLR-KKNTIDLMAEDFRSLISEFNLEGFI 79
RGR LG+DVG +G+++ DP +A+P+ + R ++ D+ E +L++++ G I
Sbjct: 5 RGRRLGIDVGSVRIGVAVCDPDGILATPVETVARDRRGGTDI--ERIAALVADYEAVGVI 62
Query: 80 VGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
VG P + AV+ + F L+ ++ Y +E T+ L +
Sbjct: 63 VGLPRTLRNEDGPAVKAARGFGRQLAG--EIAPTPIEYVDERLTTVTATAALRASGVSAK 120
Query: 139 EYKTILDKFAAVGILQEYLD 158
+ ++D+ AAV ILQ +LD
Sbjct: 121 SGRAVIDQAAAVAILQGWLD 140
>gi|160880429|ref|YP_001559397.1| Holliday junction resolvase YqgF [Clostridium phytofermentans ISDg]
gi|189046094|sp|A9KKS6.1|RUVX_CLOPH RecName: Full=Putative Holliday junction resolvase
gi|160429095|gb|ABX42658.1| Holliday junction resolvase YqgF [Clostridium phytofermentans ISDg]
Length = 150
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 73/148 (49%), Gaps = 7/148 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNT-IDLMAEDFRSLISEFNLEGFIVG 81
R +GLD G VG++ISD A + V+ RK T + LI E+ +E ++G
Sbjct: 2 RIMGLDYGSVTVGVAISDSLKLTAQGIEVIRRKSETKLRQTLARIEELIKEYEVEEIVLG 61
Query: 82 YPFNRQQNAAD-AVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
YP N + A + + F + L ++ + W+E T+ +LN ++ +
Sbjct: 62 YPKNMNNTIGERAEKSEEFAEHL---RRRTGLPVVLWDERLTTVAAHQVLNAGEVSLKKK 118
Query: 141 KTILDKFAAVGILQEYLD--NANRKVNL 166
++DK AAV ILQ YLD + +K+NL
Sbjct: 119 MEVVDKLAAVFILQGYLDYLSNKKKLNL 146
>gi|119383262|ref|YP_914318.1| Holliday junction resolvase-like protein [Paracoccus denitrificans
PD1222]
gi|167012745|sp|A1AZC8.1|RUVX_PARDP RecName: Full=Putative Holliday junction resolvase
gi|119373029|gb|ABL68622.1| Holliday junction resolvase YqgF [Paracoccus denitrificans PD1222]
Length = 158
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 6/140 (4%)
Query: 20 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFI 79
+ G GLD+G K +G+++SD +ASPL+V+ R K T D A+ ++ + L G +
Sbjct: 15 RTGAVAGLDLGTKTIGVAVSDGLRGVASPLTVIRRTKFTAD--AQALLKIVQDRALVGLV 72
Query: 80 VGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
+G P N + Q + F +L ++L + +W+E ++ E L D
Sbjct: 73 LGLPRNMDGSEGPRAQSTRAFARNL---ERLTPLPITFWDERLSTVAAERALLEGDTSRK 129
Query: 139 EYKTILDKFAAVGILQEYLD 158
++D+ AA ILQ LD
Sbjct: 130 RRAEVIDQVAAGYILQGALD 149
>gi|403668306|ref|ZP_10933581.1| Holliday junction resolvase [Kurthia sp. JC8E]
Length = 139
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 8/139 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG+++SD + + + +L + L+ ++ + F+VG+
Sbjct: 2 RVMGLDVGSKTVGVAVSDALGWTGQGIETIKINEEEGELGLDRLEELVKQYGVTEFVVGF 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTSKGVELLLNPLDLHPVE 139
P N + ++ ++LE+ + W+E T+ E +L D+ +
Sbjct: 62 PKNMNNTVGPRGEA-----SIAYKEQLEERFGLPVTLWDERLTTMAAERVLIEADVRRKD 116
Query: 140 YKTILDKFAAVGILQEYLD 158
K ++DK AAV ILQ YLD
Sbjct: 117 RKKVIDKMAAVMILQGYLD 135
>gi|270291980|ref|ZP_06198195.1| putative Holliday junction resolvase [Streptococcus sp. M143]
gi|401683903|ref|ZP_10815788.1| RNAse H domain protein, YqgF family [Streptococcus sp. BS35b]
gi|406577721|ref|ZP_11053315.1| Holliday junction resolvase-like protein [Streptococcus sp. GMD6S]
gi|406586621|ref|ZP_11061548.1| Holliday junction resolvase-like protein [Streptococcus sp. GMD1S]
gi|417794045|ref|ZP_12441308.1| RNAse H domain protein, YqgF family [Streptococcus oralis SK255]
gi|417940280|ref|ZP_12583568.1| RNAse H domain protein, YqgF family [Streptococcus oralis SK313]
gi|419778388|ref|ZP_14304281.1| RNAse H domain protein, YqgF family [Streptococcus oralis SK10]
gi|419780705|ref|ZP_14306548.1| RNAse H domain protein, YqgF family [Streptococcus oralis SK100]
gi|419782066|ref|ZP_14307877.1| RNAse H domain protein, YqgF family [Streptococcus oralis SK610]
gi|419813751|ref|ZP_14338563.1| Holliday junction resolvase-like protein [Streptococcus sp. GMD2S]
gi|419817163|ref|ZP_14341331.1| Holliday junction resolvase-like protein [Streptococcus sp. GMD4S]
gi|270279508|gb|EFA25350.1| putative Holliday junction resolvase [Streptococcus sp. M143]
gi|334271155|gb|EGL89549.1| RNAse H domain protein, YqgF family [Streptococcus oralis SK255]
gi|343389161|gb|EGV01746.1| RNAse H domain protein, YqgF family [Streptococcus oralis SK313]
gi|383183707|gb|EIC76242.1| RNAse H domain protein, YqgF family [Streptococcus oralis SK610]
gi|383185081|gb|EIC77584.1| RNAse H domain protein, YqgF family [Streptococcus oralis SK100]
gi|383187403|gb|EIC79856.1| RNAse H domain protein, YqgF family [Streptococcus oralis SK10]
gi|400186943|gb|EJO21148.1| RNAse H domain protein, YqgF family [Streptococcus sp. BS35b]
gi|404459573|gb|EKA05917.1| Holliday junction resolvase-like protein [Streptococcus sp. GMD6S]
gi|404466293|gb|EKA11637.1| Holliday junction resolvase-like protein [Streptococcus sp. GMD4S]
gi|404472684|gb|EKA17101.1| Holliday junction resolvase-like protein [Streptococcus sp. GMD2S]
gi|404473873|gb|EKA18197.1| Holliday junction resolvase-like protein [Streptococcus sp. GMD1S]
Length = 139
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ ++ + + L+ + +E F+VG
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGQFGFDRIKELVDSYKVERFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTSKGVE-LLLNPLDLHPV 138
P N + V+ + KLE+ + Y +E T+ E +L+ D+
Sbjct: 62 PKNMNNTSGPRVEAS-----QAYGAKLEELFGLPVDYQDERLTTVAAERMLIEQADISRN 116
Query: 139 EYKTILDKFAAVGILQEYLD 158
+ K ++DK AA ILQ YLD
Sbjct: 117 KRKKVIDKLAAQLILQNYLD 136
>gi|418936576|ref|ZP_13490283.1| Holliday junction resolvase [Rhizobium sp. PDO1-076]
gi|375056705|gb|EHS52873.1| Holliday junction resolvase [Rhizobium sp. PDO1-076]
Length = 166
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 6/134 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+G K +GLS SD + A+P V+ R K T D + + + + F++G P N
Sbjct: 21 GLDLGTKTIGLSASDLGRRFATPRPVIHRTKFTQDAVV--LLAFAEKEKIAAFVIGLPTN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
+A VQ + F+ +S + D+ + YW+E ++ + L +D+ + K +
Sbjct: 79 MDGSAGPRVQATRAFVRTMS---EKTDIPFIYWDERLSTVAAQRALLEMDVSRAKRKERI 135
Query: 145 DKFAAVGILQEYLD 158
D AA ILQ LD
Sbjct: 136 DSAAASFILQGALD 149
>gi|30022462|ref|NP_834093.1| Holliday junction resolvase-like protein [Bacillus cereus ATCC
14579]
gi|218232910|ref|YP_002369196.1| Holliday junction resolvase-like protein [Bacillus cereus B4264]
gi|228923138|ref|ZP_04086429.1| Holliday junction resolvase [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|229071895|ref|ZP_04205106.1| Holliday junction resolvase [Bacillus cereus F65185]
gi|229111859|ref|ZP_04241405.1| Holliday junction resolvase [Bacillus cereus Rock1-15]
gi|229129667|ref|ZP_04258635.1| Holliday junction resolvase [Bacillus cereus BDRD-Cer4]
gi|229146957|ref|ZP_04275321.1| Holliday junction resolvase [Bacillus cereus BDRD-ST24]
gi|229152590|ref|ZP_04280779.1| Holliday junction resolvase [Bacillus cereus m1550]
gi|423582594|ref|ZP_17558705.1| RNAse H-fold protein YqgF [Bacillus cereus VD014]
gi|423634791|ref|ZP_17610444.1| RNAse H-fold protein YqgF [Bacillus cereus VD156]
gi|423657341|ref|ZP_17632640.1| RNAse H-fold protein YqgF [Bacillus cereus VD200]
gi|33301594|sp|Q812R9.1|RUVX_BACCR RecName: Full=Putative Holliday junction resolvase
gi|226725486|sp|B7HE21.1|RUVX_BACC4 RecName: Full=Putative Holliday junction resolvase
gi|29898020|gb|AAP11294.1| hypothetical Cytosolic Protein [Bacillus cereus ATCC 14579]
gi|218160867|gb|ACK60859.1| conserved hypothetical protein TIGR00250 [Bacillus cereus B4264]
gi|228630851|gb|EEK87491.1| Holliday junction resolvase [Bacillus cereus m1550]
gi|228636556|gb|EEK93022.1| Holliday junction resolvase [Bacillus cereus BDRD-ST24]
gi|228653784|gb|EEL09654.1| Holliday junction resolvase [Bacillus cereus BDRD-Cer4]
gi|228671615|gb|EEL26913.1| Holliday junction resolvase [Bacillus cereus Rock1-15]
gi|228711191|gb|EEL63155.1| Holliday junction resolvase [Bacillus cereus F65185]
gi|228836517|gb|EEM81867.1| Holliday junction resolvase [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|401213473|gb|EJR20214.1| RNAse H-fold protein YqgF [Bacillus cereus VD014]
gi|401278777|gb|EJR84707.1| RNAse H-fold protein YqgF [Bacillus cereus VD156]
gi|401290084|gb|EJR95788.1| RNAse H-fold protein YqgF [Bacillus cereus VD200]
Length = 137
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 68/139 (48%), Gaps = 8/139 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K VG++ISD A L + + + L+ ++N++ +VG
Sbjct: 2 RILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGHFGFDRISELVKQYNVDKIVVGL 61
Query: 83 PFNRQQNAA---DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
P N +A Q F ++L ++L + W+E ++ E LL D+ +
Sbjct: 62 PKNMNGTIGPRGEACQ--QFAENL---RELLQLDVVMWDERLSTMAAERLLISADVSRKK 116
Query: 140 YKTILDKFAAVGILQEYLD 158
K ++DK AAV ILQ +LD
Sbjct: 117 RKQVIDKMAAVVILQGFLD 135
>gi|323350688|ref|ZP_08086349.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
VMC66]
gi|422847739|ref|ZP_16894422.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK72]
gi|422879885|ref|ZP_16926350.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1059]
gi|422883127|ref|ZP_16929576.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK49]
gi|422929730|ref|ZP_16962671.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
ATCC 29667]
gi|422932697|ref|ZP_16965628.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK340]
gi|322123108|gb|EFX94799.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
VMC66]
gi|325686737|gb|EGD28763.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK72]
gi|332363719|gb|EGJ41499.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK49]
gi|332365296|gb|EGJ43059.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1059]
gi|339614323|gb|EGQ19025.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
ATCC 29667]
gi|339618448|gb|EGQ23046.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK340]
Length = 139
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ + + E L+ E+ ++ F++G
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + V+ +L + Y +E T+ E +L+ D+ + K
Sbjct: 62 PKNMNNTSGPRVEASQAYG--QRVSELFGLPVDYQDERLTTVAAERMLVEQADISRSKRK 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 120 KVIDKLAAQLILQNYLD 136
>gi|315641319|ref|ZP_07896395.1| crossover junction endodeoxyribonuclease [Enterococcus italicus DSM
15952]
gi|315482892|gb|EFU73412.1| crossover junction endodeoxyribonuclease [Enterococcus italicus DSM
15952]
Length = 145
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 73/146 (50%), Gaps = 9/146 (6%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG + VG+++SDP A + ++ ++ + + + L ++ + F+VG
Sbjct: 2 RIMGLDVGSRTVGIAVSDPMGWTAQGIEIIKINEDEDNFGFDRVKELADQYEIGHFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTSKGVE-LLLNPLDLHPV 138
P N + +S +KLE + +Y +E T+ E +L+ +
Sbjct: 62 PKNMNNTIGPRAEAS-----MSYGEKLEQLFGLPVSYQDERLTTVQAERMLIEQANASRA 116
Query: 139 EYKTILDKFAAVGILQEYLDNANRKV 164
+ K ++DK AAV ILQ +LD + +K+
Sbjct: 117 KRKKVIDKLAAVMILQNFLDGSGKKI 142
>gi|312864393|ref|ZP_07724626.1| RNAse H domain protein, YqgF family [Streptococcus downei F0415]
gi|311100114|gb|EFQ58325.1| RNAse H domain protein, YqgF family [Streptococcus downei F0415]
Length = 139
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLD+G K VG++ISDP A L ++ + D + L+ ++ +E F+VG
Sbjct: 2 RLMGLDIGSKTVGVAISDPLGFTAQGLEIIPINEAKEDFGFQRLGELVKQYKVEKFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + V+ + A +L D+ Y +E T+ E +L+ D+ + K
Sbjct: 62 PKNMNNTSGPRVEASQAYGEKIA--ELFDIPVDYQDERLTTVQAERMLVEQADVSRGKRK 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YL+
Sbjct: 120 KVIDKLAAQLILQNYLE 136
>gi|315500169|ref|YP_004088972.1| holliday junction resolvase yqgf [Asticcacaulis excentricus CB 48]
gi|315418181|gb|ADU14821.1| Holliday junction resolvase YqgF [Asticcacaulis excentricus CB 48]
Length = 167
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 76/156 (48%), Gaps = 12/156 (7%)
Query: 14 LKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEF 73
LK + R +GLD+G+K +G+++SD I SPL ++ + K T + AE L+ +
Sbjct: 9 LKAALPPRRALIGLDLGEKTIGVAVSDISLSIGSPLELIKKSKFTQE--AERLLLLMKQR 66
Query: 74 NLEGFIVGYPFNRQQNAADAVQ-VKLFIDDLS-------ATKKLE-DMKYAYWNEGFTSK 124
G ++G P N Q V+ F +L A LE D+ A+W+E ++S
Sbjct: 67 EASGLVIGLPVNMDGTEGPRCQSVRAFARNLLRLPAEKFAAAGLEPDLPIAFWDERWSSS 126
Query: 125 GV-ELLLNPLDLHPVEYKTILDKFAAVGILQEYLDN 159
+ L+ DL + ++D+ AA ILQ LD
Sbjct: 127 VMNRFLIEEADLTRAKRAEVIDRSAAAYILQGALDR 162
>gi|336425492|ref|ZP_08605513.1| Holliday junction resolvase [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336012067|gb|EGN41993.1| Holliday junction resolvase [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 164
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 5/138 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRK-KNTIDLMAEDFRSLISEFNLEGFIVG 81
R +GLD G K VG++ISDP A + ++ RK +N + LI+E+ ++ ++G
Sbjct: 2 RIMGLDFGSKTVGVAISDPLLITAQGIEIVRRKEENKLRQTLARIEELITEYEVKEIVLG 61
Query: 82 YPFNRQQNAADAVQV-KLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
YP + + D V + K F + L L +W+E T+ + + +
Sbjct: 62 YPKHMNDSEGDRVALTKEFAEKLMRRTAL---PITFWDERLTTVAADRTMIEAGIRRENR 118
Query: 141 KTILDKFAAVGILQEYLD 158
K +D+ AAV ILQ YLD
Sbjct: 119 KEHVDRIAAVLILQGYLD 136
>gi|317497454|ref|ZP_07955774.1| hypothetical protein HMPREF0996_00754 [Lachnospiraceae bacterium
5_1_63FAA]
gi|316895240|gb|EFV17402.1| hypothetical protein HMPREF0996_00754 [Lachnospiraceae bacterium
5_1_63FAA]
Length = 139
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 66/139 (47%), Gaps = 5/139 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRK-KNTIDLMAEDFRSLISEFNLEGFIVG 81
R LGLD G K VG+++SD + A PL + RK N + L+ E+++E ++G
Sbjct: 3 RILGLDYGTKTVGVALSDELHITAQPLETITRKDANKLRKTYARIEELVKEYDVEKIVLG 62
Query: 82 YPFNRQQNAADAVQVKL-FIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
P N + + L F D L LE W+E T+ E +L +
Sbjct: 63 LPKNMNNTVGERGEDTLSFRDTLVRRTGLE---VILWDERLTTVASEKVLMESGVRRENR 119
Query: 141 KTILDKFAAVGILQEYLDN 159
K ++D+ AA ILQ YLD+
Sbjct: 120 KKVIDQIAASMILQGYLDS 138
>gi|373494853|ref|ZP_09585450.1| hypothetical protein HMPREF0380_01088 [Eubacterium infirmum F0142]
gi|371967215|gb|EHO84687.1| hypothetical protein HMPREF0380_01088 [Eubacterium infirmum F0142]
Length = 142
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 77/145 (53%), Gaps = 16/145 (11%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLR---KKNTIDLMAEDFRSLISEFNLEGFI 79
R + LDVGDK +G+++SD L + R KK+T ++ LI E+N + +
Sbjct: 3 RKIALDVGDKTIGVALSDELGITGQGLMTIERIGIKKDTGKVV-----ELIKEYNCDTVV 57
Query: 80 VGYPFNRQQNAADAVQ---VKLF---IDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPL 133
+G P N N D+VQ V+ F +++ + L D++ + +E FT+K E +L
Sbjct: 58 IGLPLN--LNGTDSVQTEKVREFRTKLENKMRSSSLADVEIVWQDERFTTKLAENVLIAG 115
Query: 134 DLHPVEYKTILDKFAAVGILQEYLD 158
++ + K +DK AAV I+Q YLD
Sbjct: 116 NVRREDRKKYVDKQAAVIIMQSYLD 140
>gi|317154143|ref|YP_004122191.1| Holliday junction resolvase YqgF [Desulfovibrio aespoeensis Aspo-2]
gi|316944394|gb|ADU63445.1| Holliday junction resolvase YqgF [Desulfovibrio aespoeensis Aspo-2]
Length = 138
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 68/139 (48%), Gaps = 6/139 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LG+D G K VGL+ISD + SP L ++ T D + E +I + ++E +VG
Sbjct: 2 RALGIDFGLKRVGLAISDRSGILVSPYLTL--ERTTRDALFEAIIEIIRQESVEAIVVGL 59
Query: 83 PFNRQ-QNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P + ++ Q + F L + D+ +E TS E LN DL + K
Sbjct: 60 PLSMDGEDTLTTRQARNFAQSLG---RRTDLPIHLADERLTSAQAEEELNAADLRGTKRK 116
Query: 142 TILDKFAAVGILQEYLDNA 160
LD AAV IL+ +L+NA
Sbjct: 117 MALDSQAAVIILRTWLENA 135
>gi|209560223|ref|YP_002286695.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
NZ131]
gi|226695308|sp|B5XJ01.1|RUVX_STRPZ RecName: Full=Putative Holliday junction resolvase
gi|209541424|gb|ACI62000.1| Putative Holliday junction resolvase [Streptococcus pyogenes NZ131]
Length = 139
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ + + L+ ++ +E F++G
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQYQVEQFVIGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N N + +V I S + L + Y +E T+ E +L+ D+ + K
Sbjct: 62 PKN--MNNTNGPRVDASITYGSHIEHLFGLPVHYQDERLTTVEAERMLIEQADISRGKRK 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YL+
Sbjct: 120 KVIDKLAAQLILQNYLN 136
>gi|160947667|ref|ZP_02094834.1| hypothetical protein PEPMIC_01602 [Parvimonas micra ATCC 33270]
gi|158446801|gb|EDP23796.1| RNAse H domain protein, YqgF family [Parvimonas micra ATCC 33270]
Length = 148
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 72/139 (51%), Gaps = 5/139 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R++ LDVGD+ +G+++SDP +A S + R+ DL E +++I + N+ +VG
Sbjct: 10 RYMALDVGDRTIGVAVSDPLFIMAEGYSTIFRESIEKDL--ESLKNIIVKENIIKVVVGL 67
Query: 83 PFNRQQNAA-DAVQVKLFIDDLS--ATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
P N +V F+D+L K D++ +E T+ E +L ++ +
Sbjct: 68 PKNMNNTIGPQGEKVLSFVDELKDFLVKNSFDIEIVMQDERLTTVSAERILIEGNMSRKK 127
Query: 140 YKTILDKFAAVGILQEYLD 158
K ++DK AA ILQ YLD
Sbjct: 128 RKKVIDKVAATYILQSYLD 146
>gi|217967412|ref|YP_002352918.1| Holliday junction resolvase YqgF [Dictyoglomus turgidum DSM 6724]
gi|226725514|sp|B8E227.1|RUVX_DICTD RecName: Full=Putative Holliday junction resolvase
gi|217336511|gb|ACK42304.1| Holliday junction resolvase YqgF [Dictyoglomus turgidum DSM 6724]
Length = 141
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 75/141 (53%), Gaps = 12/141 (8%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDF----RSLISEFNLEGF 78
R L +D G+KY+GL+ISDP IA L V K EDF + LI E+N+
Sbjct: 2 RVLAIDWGEKYIGLAISDPLRIIAQGLDVWEIKDE------EDFVNRLKKLIKEYNVSEI 55
Query: 79 IVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
++GYP + + + + + ++ + K + ++ + +E FT+ E +L D+
Sbjct: 56 VLGYPISLRGHENEKTKKIEYVAE--RIKTVVNLPIKFVDERFTTMEAERVLLEGDIKRR 113
Query: 139 EYKTILDKFAAVGILQEYLDN 159
+ K + +K AAV ILQ+YLD+
Sbjct: 114 DRKLLKNKQAAVIILQKYLDS 134
>gi|449911069|ref|ZP_21794988.1| Holliday junction resolvase-like protein [Streptococcus mutans
OMZ175]
gi|450132401|ref|ZP_21870031.1| Holliday junction resolvase-like protein [Streptococcus mutans
NLML8]
gi|449153178|gb|EMB56866.1| Holliday junction resolvase-like protein [Streptococcus mutans
NLML8]
gi|449258700|gb|EMC56264.1| Holliday junction resolvase-like protein [Streptococcus mutans
OMZ175]
Length = 139
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K +G+++SDP A L ++ + + + L+ ++ +E F+VG
Sbjct: 2 RIIGLDVGSKTIGVAVSDPLGFTAQGLEIIPINEAKGEFGFDRLADLVKDYKVEKFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + V+ K+L D+ Y +E T+ E +L+ D+ + K
Sbjct: 62 PKNMNNTSGPRVEASQAYG--KKIKELFDLPVEYQDERLTTVQAERMLVEQADVSRGKRK 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 120 KVIDKLAAQLILQNYLD 136
>gi|348026438|ref|YP_004766243.1| Holliday junction resolvase [Megasphaera elsdenii DSM 20460]
gi|341822492|emb|CCC73416.1| putative Holliday junction resolvase [Megasphaera elsdenii DSM
20460]
Length = 138
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 5/137 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K +G++ SD A + + R+ + D R LI E + +VG
Sbjct: 2 RILGLDVGSKTIGVACSDALLITAQGVETIRRQSDEADFAR--LRELIKEKEVHRIVVGK 59
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P + + ++ ++ ++ F++ T + D+ YW+E T+ + +L ++ + K
Sbjct: 60 PRHMNGDYSENMKKIEEFVERFQQT--VPDIDIVYWDERLTTVMAQNVLKEGNVRREKRK 117
Query: 142 TILDKFAAVGILQEYLD 158
+DK AA+ ILQ YLD
Sbjct: 118 KFVDKMAAILILQNYLD 134
>gi|427405634|ref|ZP_18895839.1| RNAse H-fold protein YqgF [Selenomonas sp. F0473]
gi|425708475|gb|EKU71514.1| RNAse H-fold protein YqgF [Selenomonas sp. F0473]
Length = 142
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 14/150 (9%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSL---ISEFNLEGFI 79
R++ LD+GD +G+++SD A + + R +A DF L I E+ E +
Sbjct: 3 RYMSLDIGDATIGVAVSDLLGITAQGVETIRRTS-----LAADFDRLGAVIREYEAEALV 57
Query: 80 VGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
G P + + + V+ F+ + A + D++ YW+E ++ E L D+
Sbjct: 58 AGLPKHMNGDEGERCDIVRAFMAE--AARHFPDVEIHYWDERLSTVAAERALLEADISRK 115
Query: 139 EYKTILDKFAAVGILQEYLDNANRKVNLKA 168
+ + ++DK AAV ILQ +LD R+ +L A
Sbjct: 116 KRRKVIDKMAAVYILQGFLD---RRQHLNA 142
>gi|322375055|ref|ZP_08049569.1| putative Holliday junction resolvase [Streptococcus sp. C300]
gi|321280555|gb|EFX57594.1| putative Holliday junction resolvase [Streptococcus sp. C300]
Length = 139
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ ++ + + L+ + +E F+VG
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIHINEDQGQFGFDRIKELVDSYKVERFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTSKGVE-LLLNPLDLHPV 138
P N + V+ + KLE+ + Y +E T+ E +L+ D+
Sbjct: 62 PKNMNNTSGPRVEAS-----QAYGAKLEELFGLPVDYQDERLTTVAAERMLIEQADISRN 116
Query: 139 EYKTILDKFAAVGILQEYLD 158
+ K ++DK AA ILQ YLD
Sbjct: 117 KRKKVIDKLAAQLILQNYLD 136
>gi|429763786|ref|ZP_19296128.1| RNAse H domain protein, YqgF family [Anaerostipes hadrus DSM 3319]
gi|291559331|emb|CBL38131.1| conserved hypothetical protein TIGR00250 [butyrate-producing
bacterium SSC/2]
gi|429177870|gb|EKY19173.1| RNAse H domain protein, YqgF family [Anaerostipes hadrus DSM 3319]
Length = 139
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 3/138 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRK-KNTIDLMAEDFRSLISEFNLEGFIVG 81
R LGLD G K VG+++SD + A PL + RK N + L+ E+++E ++G
Sbjct: 3 RILGLDYGTKTVGVALSDELHITAQPLETITRKDANKLRKTYARIEELVKEYDVEKIVLG 62
Query: 82 YPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + + L D A + ++ W+E T+ E +L + K
Sbjct: 63 LPKNMNNTVGERGEDTLSFRD--ALVRRTGLEVILWDERLTTVASEKVLMESGVRRENRK 120
Query: 142 TILDKFAAVGILQEYLDN 159
++D+ AA ILQ YLD+
Sbjct: 121 KVIDQIAASMILQGYLDS 138
>gi|359421074|ref|ZP_09213004.1| Holliday junction resolvase [Gordonia araii NBRC 100433]
gi|358242939|dbj|GAB11073.1| Holliday junction resolvase [Gordonia araii NBRC 100433]
Length = 151
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 10/147 (6%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRK-KNTIDLMAED------FRSLISEF 73
RGR L +DVG +G+++ DP +A+P+ + R K A D +L++E+
Sbjct: 5 RGRRLAVDVGTVRIGVAVCDPDGILATPVETVPRAGKGGTPTAAHDTAAIERLVALVAEY 64
Query: 74 NLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNP 132
IVG P + R + A A V+ F D L+ + +E + Y +E ++ L
Sbjct: 65 EAVEVIVGLPRDLRGEEALAAQAVRRFGDQLA--RAIEPVPVIYTDERMSTASAARALRD 122
Query: 133 LDLHPVEYKTILDKFAAVGILQEYLDN 159
+ + ++D+ AAV ILQ +LD+
Sbjct: 123 AGRDSRKARGVIDQAAAVAILQGWLDS 149
>gi|114327615|ref|YP_744771.1| endonuclease involved in recombination [Granulibacter bethesdensis
CGDNIH1]
gi|114315789|gb|ABI61849.1| endonuclease involved in recombination [Granulibacter bethesdensis
CGDNIH1]
Length = 168
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 72/146 (49%), Gaps = 5/146 (3%)
Query: 14 LKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEF 73
L+ ++S+ R LG+D G + +G+++SD IASP + R K ++ AE+ ++ +
Sbjct: 11 LQSRLSRNQRLLGIDPGSRIIGIALSDVLLGIASPYGSIRRGKLRVN--AEEIAAIARKE 68
Query: 74 NLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGV-ELLLNP 132
G I+G P + + A Q D A + A W+E TS V +LL++
Sbjct: 69 EAGGMIIGLPLSMDGSFGPAAQAAR--DWAIALSDATGLPAALWDERETSSRVHQLLISS 126
Query: 133 LDLHPVEYKTILDKFAAVGILQEYLD 158
DL ++DK AA +LQ LD
Sbjct: 127 ADLGRKRRAAVVDKMAAAVMLQSALD 152
>gi|315221498|ref|ZP_07863418.1| conserved hypothetical protein TIGR00250 [Streptococcus anginosus
F0211]
gi|315189332|gb|EFU23027.1| conserved hypothetical protein TIGR00250 [Streptococcus anginosus
F0211]
Length = 139
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG+++SDP A L ++ + + + L+ E+ ++ F+VG
Sbjct: 2 RIMGLDVGSKTVGVAVSDPLGFTAQGLEIIPIDEEKGEFGFDRLNGLVQEYKVDKFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + V+ + ++L + Y +E T+ E +L+ D+ + K
Sbjct: 62 PKNMNNTSGPRVEASQAYG--TKIEQLFHLPVEYQDERLTTVAAERMLIEQADVSRKKRK 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 120 KVIDKLAAQLILQNYLD 136
>gi|431806327|ref|YP_007233228.1| Putative Holliday junction resolvase [Liberibacter crescens BT-1]
gi|430800302|gb|AGA64973.1| Putative Holliday junction resolvase [Liberibacter crescens BT-1]
Length = 159
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 4/150 (2%)
Query: 9 LFEQMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRS 68
+F + L + + + G+D+G K +G+SISD +IASP + RKK T D A+ +
Sbjct: 4 IFIEELSKILKPKQPIAGIDLGTKTIGMSISDLSQRIASPRPFIKRKKFTQD--ADILLA 61
Query: 69 LISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVEL 128
+ FI+G P N N ++ + + D + + D+ + +W+E ++ +
Sbjct: 62 FAKIEKISAFIIGLPIN--MNGSEGPRAQATRDFVKNMNEKTDIPFIFWDERLSTVAAKR 119
Query: 129 LLNPLDLHPVEYKTILDKFAAVGILQEYLD 158
+L +D+ + +D AA ILQ LD
Sbjct: 120 MLINMDISRKKQSEKIDSIAATLILQTALD 149
>gi|352684576|ref|YP_004896561.1| hypothetical protein Acin_1196 [Acidaminococcus intestini RyC-MR95]
gi|350279231|gb|AEQ22421.1| conserved hypothetical protein [Acidaminococcus intestini RyC-MR95]
Length = 135
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 3/138 (2%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLD+G + +G+++SD IA + + R DL L+ + + F++GYP
Sbjct: 1 MGLDLGTRTIGVAVSDEMGLIARGIETIRRSGTKNDLAR--LHELVQKEEVGAFVLGYPK 58
Query: 85 NRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
N + + L T+ D K W+E ++ E +L DL + K ++
Sbjct: 59 NMNGTIGERGKASEAFSKLLQTE-FPDAKITLWDERLSTVAAEKVLIDADLTRKKRKKVI 117
Query: 145 DKFAAVGILQEYLDNANR 162
D AAV ILQ YLD+ R
Sbjct: 118 DMMAAVVILQNYLDSLRR 135
>gi|241890070|ref|ZP_04777368.1| putative Holliday junction resolvase [Gemella haemolysans ATCC
10379]
gi|241863692|gb|EER68076.1| putative Holliday junction resolvase [Gemella haemolysans ATCC
10379]
Length = 142
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 70/139 (50%), Gaps = 1/139 (0%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLD G K +G+++SD A + + + D + + L+ E N+ +VG
Sbjct: 5 RIMGLDYGSKTIGVAVSDLLGFTAQGIETININEQVKDFKIKRIKELVQEHNVGTIVVGL 64
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N + + L+ ++ KK+++++ +E T+ G E +L ++ + K
Sbjct: 65 PKNMDNSVGFRGEATLYFVEV-LKKKIKNVEIILQDERLTTMGAERVLLEANVSRKKRKN 123
Query: 143 ILDKFAAVGILQEYLDNAN 161
++DK AAV ILQ YLD N
Sbjct: 124 VIDKMAAVLILQTYLDKLN 142
>gi|220923238|ref|YP_002498540.1| Holliday junction resolvase YqgF [Methylobacterium nodulans ORS
2060]
gi|219947845|gb|ACL58237.1| Holliday junction resolvase YqgF [Methylobacterium nodulans ORS
2060]
Length = 163
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 6/150 (4%)
Query: 10 FEQMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSL 69
F + + + R LGLD+G K +GL++SD +IASPL + R K T D A+ +
Sbjct: 6 FARFAESSRAGGARLLGLDLGTKTIGLALSDVGRRIASPLETIRRVKFTPD--AQKLAGI 63
Query: 70 ISEFNLEGFIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVEL 128
+ + G ++G P N + Q + F+ +L+ L + ++E ++ V
Sbjct: 64 ARQHGVGGLVIGLPLNMDGSEGPRAQSTRAFVRNLAPILPLPVL---LFDERLSTAAVTR 120
Query: 129 LLNPLDLHPVEYKTILDKFAAVGILQEYLD 158
L D ++DK AA ILQ LD
Sbjct: 121 TLLEADASRARRGDLVDKLAAAYILQGCLD 150
>gi|386581110|ref|YP_006077514.1| Holliday junction resolvase-like protein [Streptococcus suis SS12]
gi|353733256|gb|AER14266.1| Holliday junction resolvase-like protein [Streptococcus suis SS12]
Length = 136
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 3/135 (2%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLDVG K VG++ISDP A L ++ + + E L+ ++ ++ F+VG P
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIPIDEEKGEFGLEHLTELVEQYKVDKFVVGLPK 60
Query: 85 NRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYKTI 143
N + V+ DL + + Y +E T+ E +L+ D+ + K +
Sbjct: 61 NMNNTSGPRVEASQAYGDLLTERY--KLPVDYQDERLTTVAAERMLIEQADISRGKRKKV 118
Query: 144 LDKFAAVGILQEYLD 158
+DK AA ILQ YLD
Sbjct: 119 IDKLAAQLILQNYLD 133
>gi|399993092|ref|YP_006573332.1| hypothetical protein PGA1_c19190 [Phaeobacter gallaeciensis DSM
17395 = CIP 105210]
gi|400754699|ref|YP_006563067.1| hypothetical protein PGA2_c18260 [Phaeobacter gallaeciensis 2.10]
gi|398653852|gb|AFO87822.1| hypothetical protein PGA2_c18260 [Phaeobacter gallaeciensis 2.10]
gi|398657647|gb|AFO91613.1| hypothetical protein PGA1_c19190 [Phaeobacter gallaeciensis DSM
17395 = CIP 105210]
Length = 157
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 6/134 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD GDK VG++ISD +A+PL + RKK T+D A ++ + + ++G P N
Sbjct: 21 GLDFGDKTVGVAISDRMGTVATPLETIRRKKFTLD--AARLFEIVKDREVGALLLGLPRN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
Q + F +L+ KL ++ +W+E ++ E L D ++
Sbjct: 79 MDGTEGPRCQKTRAFARNLA---KLTELPIGFWDERLSTVAAERALLEADTSRKRRAEVI 135
Query: 145 DKFAAVGILQEYLD 158
D AA ILQ LD
Sbjct: 136 DHVAASYILQGALD 149
>gi|428227076|ref|YP_007111173.1| Holliday junction resolvase YqgF [Geitlerinema sp. PCC 7407]
gi|427986977|gb|AFY68121.1| Holliday junction resolvase YqgF [Geitlerinema sp. PCC 7407]
Length = 162
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 79/156 (50%), Gaps = 9/156 (5%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
LGLDVG K +G++ D IA+ L L RK D+ E R++ E ++ +VG P+
Sbjct: 6 LGLDVGRKRIGIAGCDGTGLIATGLMTLERKSFVQDM--EQLRAIAQERQVQLLVVGLPY 63
Query: 85 NRQQN-AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143
+ + + A QV+ F A++ L D+ + +E TS E LL + P K +
Sbjct: 64 SMDGSLGSQARQVQRFAQ--RASQAL-DLPVEFVDERLTSFQAEQLLLAENRSPSRNKGL 120
Query: 144 LDKFAAVGILQEYLD---NANRKVNLKANVLRPIIN 176
+D+ AA ILQ++LD ++ R V L+ P +
Sbjct: 121 IDRKAAAIILQQWLDERRSSGRSVLLETTPTDPTTH 156
>gi|365157965|ref|ZP_09354208.1| putative Holliday junction resolvase [Bacillus smithii 7_3_47FAA]
gi|363622144|gb|EHL73315.1| putative Holliday junction resolvase [Bacillus smithii 7_3_47FAA]
Length = 138
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 69/143 (48%), Gaps = 14/143 (9%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISD A + + + DL + + LI ++ ++ +VG
Sbjct: 2 RTMGLDVGSKTVGVAISDELGWTAQGIETIKVDEEKGDLGFDRLKELIEDYQVDKIVVGL 61
Query: 83 PFNRQQNA---ADAVQVKLFIDDLSATKKLE---DMKYAYWNEGFTSKGVELLLNPLDLH 136
P N +A Q + KKLE + W+E ++ E +L D+
Sbjct: 62 PKNMNNTIGPRGEASQ--------AYAKKLEKEFSLPVVLWDERLSTMAAERVLLEADVS 113
Query: 137 PVEYKTILDKFAAVGILQEYLDN 159
+ K ++DK AAV ILQ YLD+
Sbjct: 114 RKKRKKVIDKMAAVMILQGYLDS 136
>gi|302671971|ref|YP_003831931.1| holliday junction resolvase YqgF [Butyrivibrio proteoclasticus
B316]
gi|302396444|gb|ADL35349.1| holliday junction resolvase YqgF [Butyrivibrio proteoclasticus
B316]
Length = 145
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 71/146 (48%), Gaps = 3/146 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKK-NTIDLMAEDFRSLISEFNLEGFIVG 81
R +GLD G K VG++ISD A ++ RK+ N + LI E+ + ++G
Sbjct: 2 RIMGLDYGSKTVGVAISDELLLTAQGREIIRRKEENKLRRTLARIEELIVEYGVTKIVLG 61
Query: 82 YPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N Q ++ Q+ L D ++ + W+E T+ + +++ + + K
Sbjct: 62 LPLNMDQTPSERSQLCLEFKD--KIERRTGIPVVMWDERLTTVEADEIMDEAGIRGRDRK 119
Query: 142 TILDKFAAVGILQEYLDNANRKVNLK 167
+D AA ILQ+YLDN ++ ++ K
Sbjct: 120 EYVDMIAAQIILQDYLDNTDKAIDEK 145
>gi|229086950|ref|ZP_04219107.1| Holliday junction resolvase [Bacillus cereus Rock3-44]
gi|228696326|gb|EEL49154.1| Holliday junction resolvase [Bacillus cereus Rock3-44]
Length = 137
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 2/137 (1%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K VG++ISD A L + + + L+ ++N++ +VG
Sbjct: 2 RILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGIFGFDRVSELVKQYNVDKIVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N N + + + ++L ++ W+E ++ E LL D+ + K
Sbjct: 62 PKN--MNGTIGPRGEACQQYAESLRELLQLEVILWDERLSTMAAERLLISADVSRKKRKQ 119
Query: 143 ILDKFAAVGILQEYLDN 159
++DK AAV ILQ YLD+
Sbjct: 120 VIDKMAAVVILQGYLDS 136
>gi|421276213|ref|ZP_15727036.1| putative Holliday junction resolvase [Streptococcus mitis SPAR10]
gi|395878166|gb|EJG89233.1| putative Holliday junction resolvase [Streptococcus mitis SPAR10]
Length = 136
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 70/141 (49%), Gaps = 15/141 (10%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLDVG K VG++ISDP A L ++ ++ + E + L+ + +E F+VG P
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGEFGFERLKELVDTYKVERFVVGLPK 60
Query: 85 NRQQN------AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHP 137
N A+ A VKL ++L + Y +E T+ E +L+ D+
Sbjct: 61 NMNNTSGPRVEASQAYGVKL--------EELFGLPVEYQDERLTTVAAERMLIEQADISR 112
Query: 138 VEYKTILDKFAAVGILQEYLD 158
+ K ++DK AA ILQ YLD
Sbjct: 113 NKRKKVIDKLAAQLILQNYLD 133
>gi|333919510|ref|YP_004493091.1| putative Holliday junction resolvase [Amycolicicoccus subflavus
DQS3-9A1]
gi|333481731|gb|AEF40291.1| Putative Holliday junction resolvase [Amycolicicoccus subflavus
DQS3-9A1]
Length = 170
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 71/147 (48%), Gaps = 9/147 (6%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAE--DFRSLISEFNLEGF 78
RGR +G+DVG +G+++SDP +ASP+ + R + E ++I E++
Sbjct: 19 RGRRIGIDVGSVRIGVAVSDPDGILASPVETVTRNTRVVSDSRELDQIAAIIEEYSAVEV 78
Query: 79 IVGYPFN---RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDL 135
+VG P Q +AADA F + L +++ + +E T+ + L
Sbjct: 79 VVGLPRTLRGEQGHAADAALT--FAEQLRG--RIQPIPIRLSDERMTTVTAQRDLRAAGR 134
Query: 136 HPVEYKTILDKFAAVGILQEYLDNANR 162
+ + I+D+ AAV ILQ +LD R
Sbjct: 135 KAKQQRAIIDQAAAVAILQGWLDERAR 161
>gi|163942136|ref|YP_001647020.1| Holliday junction resolvase-like protein [Bacillus
weihenstephanensis KBAB4]
gi|229013604|ref|ZP_04170735.1| Holliday junction resolvase [Bacillus mycoides DSM 2048]
gi|229032036|ref|ZP_04188019.1| Holliday junction resolvase [Bacillus cereus AH1271]
gi|229062082|ref|ZP_04199407.1| Holliday junction resolvase [Bacillus cereus AH603]
gi|229135209|ref|ZP_04264008.1| Holliday junction resolvase [Bacillus cereus BDRD-ST196]
gi|229169130|ref|ZP_04296845.1| Holliday junction resolvase [Bacillus cereus AH621]
gi|229175060|ref|ZP_04302578.1| Holliday junction resolvase [Bacillus cereus MM3]
gi|423368433|ref|ZP_17345865.1| RNAse H-fold protein YqgF [Bacillus cereus VD142]
gi|423470603|ref|ZP_17447347.1| RNAse H-fold protein YqgF [Bacillus cereus BAG6O-2]
gi|423483963|ref|ZP_17460653.1| RNAse H-fold protein YqgF [Bacillus cereus BAG6X1-2]
gi|423489565|ref|ZP_17466247.1| RNAse H-fold protein YqgF [Bacillus cereus BtB2-4]
gi|423495288|ref|ZP_17471932.1| RNAse H-fold protein YqgF [Bacillus cereus CER057]
gi|423497918|ref|ZP_17474535.1| RNAse H-fold protein YqgF [Bacillus cereus CER074]
gi|423512498|ref|ZP_17489029.1| RNAse H-fold protein YqgF [Bacillus cereus HuA2-1]
gi|423519083|ref|ZP_17495564.1| RNAse H-fold protein YqgF [Bacillus cereus HuA2-4]
gi|423591622|ref|ZP_17567653.1| RNAse H-fold protein YqgF [Bacillus cereus VD048]
gi|423598303|ref|ZP_17574303.1| RNAse H-fold protein YqgF [Bacillus cereus VD078]
gi|423660774|ref|ZP_17635943.1| RNAse H-fold protein YqgF [Bacillus cereus VDM022]
gi|423669967|ref|ZP_17644996.1| RNAse H-fold protein YqgF [Bacillus cereus VDM034]
gi|423673829|ref|ZP_17648768.1| RNAse H-fold protein YqgF [Bacillus cereus VDM062]
gi|226725488|sp|A9VI07.1|RUVX_BACWK RecName: Full=Putative Holliday junction resolvase
gi|163864333|gb|ABY45392.1| Holliday junction resolvase YqgF [Bacillus weihenstephanensis
KBAB4]
gi|228608428|gb|EEK65732.1| Holliday junction resolvase [Bacillus cereus MM3]
gi|228614358|gb|EEK71468.1| Holliday junction resolvase [Bacillus cereus AH621]
gi|228648251|gb|EEL04287.1| Holliday junction resolvase [Bacillus cereus BDRD-ST196]
gi|228717234|gb|EEL68909.1| Holliday junction resolvase [Bacillus cereus AH603]
gi|228729281|gb|EEL80275.1| Holliday junction resolvase [Bacillus cereus AH1271]
gi|228747663|gb|EEL97535.1| Holliday junction resolvase [Bacillus mycoides DSM 2048]
gi|401080760|gb|EJP89044.1| RNAse H-fold protein YqgF [Bacillus cereus VD142]
gi|401141514|gb|EJQ49069.1| RNAse H-fold protein YqgF [Bacillus cereus BAG6X1-2]
gi|401151381|gb|EJQ58833.1| RNAse H-fold protein YqgF [Bacillus cereus CER057]
gi|401160138|gb|EJQ67517.1| RNAse H-fold protein YqgF [Bacillus cereus HuA2-4]
gi|401161205|gb|EJQ68572.1| RNAse H-fold protein YqgF [Bacillus cereus CER074]
gi|401231755|gb|EJR38257.1| RNAse H-fold protein YqgF [Bacillus cereus VD048]
gi|401236573|gb|EJR43030.1| RNAse H-fold protein YqgF [Bacillus cereus VD078]
gi|401299094|gb|EJS04694.1| RNAse H-fold protein YqgF [Bacillus cereus VDM034]
gi|401300815|gb|EJS06404.1| RNAse H-fold protein YqgF [Bacillus cereus VDM022]
gi|401310195|gb|EJS15520.1| RNAse H-fold protein YqgF [Bacillus cereus VDM062]
gi|402431801|gb|EJV63865.1| RNAse H-fold protein YqgF [Bacillus cereus BtB2-4]
gi|402436269|gb|EJV68301.1| RNAse H-fold protein YqgF [Bacillus cereus BAG6O-2]
gi|402449469|gb|EJV81306.1| RNAse H-fold protein YqgF [Bacillus cereus HuA2-1]
Length = 137
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 8/140 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K VG+++SD A L + + + L+ ++N++ +VG
Sbjct: 2 RILGLDVGTKTVGVAMSDEMGWTAQGLETIRINEERGHFGFDRISELVKQYNVDKIVVGL 61
Query: 83 PFNRQQNAA---DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
P N +A Q F ++L + L ++ W+E ++ E LL D+ +
Sbjct: 62 PKNMNGTIGPRGEACQ--QFAENL---RNLLQLEVVMWDERLSTMAAERLLISADVSRKK 116
Query: 140 YKTILDKFAAVGILQEYLDN 159
K ++DK AAV ILQ +LD+
Sbjct: 117 RKQVIDKMAAVVILQGFLDS 136
>gi|395782856|ref|ZP_10463227.1| RNAse H-fold protein YqgF [Bartonella rattimassiliensis 15908]
gi|395416465|gb|EJF82840.1| RNAse H-fold protein YqgF [Bartonella rattimassiliensis 15908]
Length = 159
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 69/137 (50%), Gaps = 12/137 (8%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEG---FIVGY 82
GLD+G K +G++ISD I++P VL RKK ED +LI N E I+G
Sbjct: 21 GLDLGTKTIGIAISDMGLMISNPRPVLQRKK-----FIEDAHTLIKILNRENVGVIIIGL 75
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N ++ VQ + F+ ++ A K+ + +W+E ++ E L +++ +
Sbjct: 76 PLNMNGSSGSRVQATRAFVSNMRAYTKI---PFVFWDERLSTIAAERFLLEMNVSRAKRA 132
Query: 142 TILDKFAAVGILQEYLD 158
+ +D AA ILQ L+
Sbjct: 133 SRIDSAAAAFILQSALN 149
>gi|227874508|ref|ZP_03992680.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Oribacterium sinus F0268]
gi|227839652|gb|EEJ50110.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Oribacterium sinus F0268]
Length = 141
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 70/138 (50%), Gaps = 3/138 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKN-TIDLMAEDFRSLISEFNLEGFIVG 81
R L LD G K VGL+I+DP I PL + R++ + E+ + E+ +E ++G
Sbjct: 2 RILALDYGSKTVGLAITDPLGIIVQPLKTIWREREGKLRKTVEEIQETCKEYQVEELVLG 61
Query: 82 YPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
YP + + + V+ L ++ KK+E + ++E ++ E +L + K
Sbjct: 62 YPCHMDGSEGERVERVLAFQEM-LKKKIE-LPIHLYDERLSTMEAEEILRENGVPKDRQK 119
Query: 142 TILDKFAAVGILQEYLDN 159
+LD+ AA IL++YL N
Sbjct: 120 EVLDQVAAQVILEDYLRN 137
>gi|392426676|ref|YP_006467670.1| RNAse H-fold protein YqgF [Desulfosporosinus acidiphilus SJ4]
gi|391356639|gb|AFM42338.1| RNAse H-fold protein YqgF [Desulfosporosinus acidiphilus SJ4]
Length = 140
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 70/144 (48%), Gaps = 12/144 (8%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLD G K +G+++SD A + + R K+ I E+ LI E+ + ++GY
Sbjct: 2 RIMGLDFGSKTIGVAVSDELFYTAQGVKTIRRSKSEI----EELGMLIQEYGISEIVIGY 57
Query: 83 PFNRQQNAADAVQVKL---FIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
P N N + L FI+ LS+ L W+E ++ + L D+ +
Sbjct: 58 PKN--MNGTLGPRCALTDEFIERLSSEFGL---PVERWDERLSTVAAQRTLLEADVSRGK 112
Query: 140 YKTILDKFAAVGILQEYLDNANRK 163
K ++DK AAV ILQ YLD + +
Sbjct: 113 RKQVIDKMAAVFILQGYLDRRHAR 136
>gi|225387769|ref|ZP_03757533.1| hypothetical protein CLOSTASPAR_01539 [Clostridium asparagiforme
DSM 15981]
gi|225046130|gb|EEG56376.1| hypothetical protein CLOSTASPAR_01539 [Clostridium asparagiforme
DSM 15981]
Length = 151
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 3/138 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRK-KNTIDLMAEDFRSLISEFNLEGFIVG 81
R +GLD G K VG+++ DP A + ++RK +N + LI + +E ++G
Sbjct: 2 RIMGLDYGSKTVGVAVCDPLGITAQTVETIVRKDENKLRKTLARIEELIGAYEIERIVLG 61
Query: 82 YPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
YP N + Q + +A ++ + W+E T+ + +L + K
Sbjct: 62 YPKNMNNTVGERAQKAEELK--AALERRTGLPVILWDERLTTVAADRVLMESGVRREHRK 119
Query: 142 TILDKFAAVGILQEYLDN 159
+D+ AA ILQ YLDN
Sbjct: 120 ESVDQIAAAMILQGYLDN 137
>gi|329770531|ref|ZP_08261909.1| Holliday junction resolvase [Gemella sanguinis M325]
gi|328836280|gb|EGF85949.1| Holliday junction resolvase [Gemella sanguinis M325]
Length = 142
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 1/139 (0%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLD G K +G+++SD A + + + D + + L++E N+ IVG
Sbjct: 5 RIMGLDYGSKTIGVAVSDLLGLTAQGIETININEQIKDFKIKRIKELVNEHNVGKIIVGL 64
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N + + L+ ++ KK++ ++ +E T+ G E +L ++ + K
Sbjct: 65 PKNMDNSIGFRGEATLYFVEV-LKKKIKSVEIILQDERLTTMGAERVLLEANVSRKKRKN 123
Query: 143 ILDKFAAVGILQEYLDNAN 161
++DK AAV ILQ YLD N
Sbjct: 124 VIDKMAAVLILQTYLDKLN 142
>gi|406981016|gb|EKE02542.1| hypothetical protein ACD_20C00363G0008 [uncultured bacterium]
Length = 139
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 71/139 (51%), Gaps = 10/139 (7%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R++GLDVG K +G+++SDP +A P+ + R + E+ + + E+N+ IVG
Sbjct: 5 RYIGLDVGTKRIGIAVSDPLFILARPVKTIPRYPENKSI--EEIKDVCKEYNVSVIIVGL 62
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTSKGVELLLNPLDLHPVE 139
P N + Q D ++ K LED + + +E +S E +L + P +
Sbjct: 63 PKNMDGSIGPQAQ-----DAMAFAKLLEDNIQTEVVFEDERLSSYEAERILIEQNKKPSK 117
Query: 140 YKTILDKFAAVGILQEYLD 158
K ++D AA +LQ+YL+
Sbjct: 118 NKALIDMEAAAIVLQQYLN 136
>gi|395793395|ref|ZP_10472797.1| RNAse H-fold protein YqgF [Bartonella vinsonii subsp. arupensis
Pm136co]
gi|423713928|ref|ZP_17688188.1| RNAse H-fold protein YqgF [Bartonella vinsonii subsp. arupensis
OK-94-513]
gi|395421734|gb|EJF87970.1| RNAse H-fold protein YqgF [Bartonella vinsonii subsp. arupensis
OK-94-513]
gi|395430777|gb|EJF96806.1| RNAse H-fold protein YqgF [Bartonella vinsonii subsp. arupensis
Pm136co]
Length = 159
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 12/137 (8%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEF---NLEGFIVGY 82
GLD+G K +G++ISD ++P VL RKK ED +LI F N+ I+G
Sbjct: 21 GLDLGKKTIGIAISDRGLTFSNPRPVLQRKK-----FMEDAHTLIKIFDRENVGAIIIGL 75
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N ++ Q + F+ ++ K D+ + +W+E ++ E L +D+ +
Sbjct: 76 PLNMNGSSGPRAQATRTFVSNM---KAYTDIPFVFWDERLSTIAAERSLLEMDVSRAKRA 132
Query: 142 TILDKFAAVGILQEYLD 158
T +D AA ILQ L+
Sbjct: 133 TRIDSAAAAFILQGALN 149
>gi|421860863|ref|ZP_16292942.1| predicted endonuclease [Paenibacillus popilliae ATCC 14706]
gi|410829577|dbj|GAC43379.1| predicted endonuclease [Paenibacillus popilliae ATCC 14706]
Length = 138
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 4/141 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
+ LGLD GD+ +G+++SD A L V++R+K DL +I E +E ++G
Sbjct: 2 KILGLDYGDRKIGVAVSDAFGWTAQGLEVIVRRKPEDDL--RRIGDIIKEHGVEEIVIGL 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N N + +L + K+ + W+E ++ E L D+ + +
Sbjct: 60 PKN--MNGTIGPRGELSMSYAEILKQSFGLPVHLWDERLSTVSAERALLEADVSRKKRRQ 117
Query: 143 ILDKFAAVGILQEYLDNANRK 163
++DK AA ILQ YLD +R+
Sbjct: 118 VIDKMAATIILQTYLDYQSRR 138
>gi|422872481|ref|ZP_16918974.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1087]
gi|328944731|gb|EGG38892.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1087]
Length = 139
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ + E L+ E+ ++ F++G
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGGFGLERLGELVKEYKVDKFVIGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + V+ A +L + Y +E T+ E +L+ D+ + K
Sbjct: 62 PKNMNNTSGPRVEASQAYGQRIA--ELFGLPVDYQDERLTTVAAERMLVEQADISRSKRK 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 120 KVIDKLAAQLILQNYLD 136
>gi|414564964|ref|YP_006043925.1| Holliday junction resolvase [Streptococcus equi subsp.
zooepidemicus ATCC 35246]
gi|338848029|gb|AEJ26241.1| Holliday junction resolvase [Streptococcus equi subsp.
zooepidemicus ATCC 35246]
Length = 136
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 72/136 (52%), Gaps = 5/136 (3%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLDVG K VG++ISDP A L ++ ++ D + L+ ++ ++ F++G P
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIRINEDKQDFGFDRLAELVKQYQVDRFVIGLPK 60
Query: 85 NRQQNAADAVQV-KLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYKT 142
N + V+ K + D + ++L + +Y +E T+ E +L+ D+ + K
Sbjct: 61 NMNNTSGPRVEASKAYGDKI---EELFHIPVSYQDERLTTVEAERMLIEQADISRGKRKK 117
Query: 143 ILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 118 VIDKLAAQLILQNYLD 133
>gi|296133403|ref|YP_003640650.1| Holliday junction resolvase YqgF [Thermincola potens JR]
gi|296031981|gb|ADG82749.1| Holliday junction resolvase YqgF [Thermincola potens JR]
Length = 133
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 70/142 (49%), Gaps = 13/142 (9%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K +G+++SDP A L+V+ + + +L +I + + +VG
Sbjct: 2 RVLGLDVGTKRIGVAVSDPLRLTAQGLTVIKKGEELTEL-----PRIIEQMEVSEIVVGL 56
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTSKGVELLLNPLDLHPVE 139
P N + Q + L T+KL + + ++E T+ E +L DL +
Sbjct: 57 PKNMDGSLGPKAQ-----EILELTEKLRETLQLPVHTYDERLTTVAAERILLEADLSRAK 111
Query: 140 YKTILDKFAAVGILQEYLDNAN 161
+ ++DK AAV ILQ YLD+
Sbjct: 112 RRQVVDKTAAVLILQGYLDSTR 133
>gi|255655297|ref|ZP_05400706.1| putative holliday junction resolvase [Clostridium difficile
QCD-23m63]
gi|296451281|ref|ZP_06893021.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Clostridium difficile NAP08]
gi|296880367|ref|ZP_06904330.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Clostridium difficile NAP07]
gi|296259887|gb|EFH06742.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Clostridium difficile NAP08]
gi|296428608|gb|EFH14492.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Clostridium difficile NAP07]
Length = 141
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 4/137 (2%)
Query: 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 81
GR +GLDVGDK +G+++SD A + + R D+ E+ +++I E + + G
Sbjct: 4 GRIMGLDVGDKTIGVAVSDLMGLTAQGVKTIKRVGKKKDI--EELKAIIKEKQVNKIVSG 61
Query: 82 YPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N N Q + I K+ + +W+E ++ E L D+ + K
Sbjct: 62 LPKN--MNGTLGPQGEKVIKFCELVKEETGIDVEFWDERLSTVAAERSLLEADVSRQKRK 119
Query: 142 TILDKFAAVGILQEYLD 158
++D AAV ILQ YLD
Sbjct: 120 KVIDMLAAVIILQGYLD 136
>gi|335031276|ref|ZP_08524723.1| RNAse H domain protein, YqgF family [Streptococcus anginosus SK52 =
DSM 20563]
gi|333770098|gb|EGL47164.1| RNAse H domain protein, YqgF family [Streptococcus anginosus SK52 =
DSM 20563]
Length = 139
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG+++SDP A L ++ + + + L E+ +E F+VG
Sbjct: 2 RIMGLDVGSKTVGVAVSDPLGFTAQGLEIIPIDEEKGEFGFDRLSELAKEYKVEKFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + V+ + ++L + Y +E T+ E +L+ D+ + K
Sbjct: 62 PKNMNNTSGPRVEASQAYG--AKIEQLFHLPVEYQDERLTTVAAERMLIEQADVSRKKRK 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 120 KVIDKLAAQLILQNYLD 136
>gi|357054062|ref|ZP_09115153.1| Holliday junction resolvase [Clostridium clostridioforme 2_1_49FAA]
gi|355384947|gb|EHG32000.1| Holliday junction resolvase [Clostridium clostridioforme 2_1_49FAA]
Length = 141
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 5/139 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLR-KKNTIDLMAEDFRSLISEFNLEGFIVG 81
R +GLD G K VG+++ DP A + + R +N + LI EF +E ++G
Sbjct: 2 RIMGLDFGSKTVGVAVCDPLGITAQTVETITRASENKMRQTLARIEQLIGEFEIECIVLG 61
Query: 82 YPFNRQQNAAD-AVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
YP N + + + F +A ++ ++ W+E T+ E +L +
Sbjct: 62 YPKNMNNTVGERGEKTREF---KAALERRTGLEVILWDERLTTVAAERVLIESGVRRENR 118
Query: 141 KTILDKFAAVGILQEYLDN 159
K +D+ AA ILQ YLD+
Sbjct: 119 KKSVDQIAAAMILQGYLDS 137
>gi|421074114|ref|ZP_15535155.1| Holliday junction resolvase [Pelosinus fermentans JBW45]
gi|392527781|gb|EIW50866.1| Holliday junction resolvase [Pelosinus fermentans JBW45]
Length = 138
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R L LDVGDK +G++ SD A + V+ R DL +I+E+ + ++G
Sbjct: 2 RILALDVGDKTIGVAASDLLLLTAQGIEVIRRTSLERDL--SRLNEIITEYEVGTILIGL 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N + ++ +L A + MK W+E ++ G + L D+ + K
Sbjct: 60 PKNMNGSIGPRGELMQTFANLVA-ETFPTMKVVLWDERLSTVGAQKALIAADVSRAKRKK 118
Query: 143 ILDKFAAVGILQEYLDN 159
++DK AAV ILQ YLD+
Sbjct: 119 VIDKMAAVFILQGYLDS 135
>gi|359766977|ref|ZP_09270771.1| putative Holliday junction resolvase [Gordonia polyisoprenivorans
NBRC 16320]
gi|359315605|dbj|GAB23604.1| putative Holliday junction resolvase [Gordonia polyisoprenivorans
NBRC 16320]
Length = 151
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 70/144 (48%), Gaps = 10/144 (6%)
Query: 19 SKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNT---IDLMAEDFRSLISEFNL 75
++RGR LG+DVG +G+++ DP +A+P+ + R + + +AE L +E+ +
Sbjct: 11 TRRGRRLGIDVGSVRIGVAVCDPDGILATPVETVRRDTSGGSDVTRIAE----LAAEYEV 66
Query: 76 EGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLD 134
G ++G P R + + F D L T + + Y +E T+ L
Sbjct: 67 VGVVIGLPKTLRNTDGVAVAAAREFGDAL--TSAIAPVLVEYVDERLTTVTAAQALRASG 124
Query: 135 LHPVEYKTILDKFAAVGILQEYLD 158
++++D+ AAV ILQ +LD
Sbjct: 125 RSAKASRSVIDQAAAVAILQGWLD 148
>gi|302023160|ref|ZP_07248371.1| Holliday junction resolvase-like protein [Streptococcus suis
05HAS68]
gi|330831916|ref|YP_004400741.1| Holliday junction resolvase-like protein [Streptococcus suis ST3]
gi|386579043|ref|YP_006075448.1| Holliday junction resolvase-like protein [Streptococcus suis JS14]
gi|386583196|ref|YP_006079599.1| Holliday junction resolvase-like protein [Streptococcus suis D9]
gi|386585264|ref|YP_006081666.1| Holliday junction resolvase-like protein [Streptococcus suis D12]
gi|386587342|ref|YP_006083743.1| Holliday junction resolvase-like protein [Streptococcus suis A7]
gi|389855783|ref|YP_006358026.1| Holliday junction resolvase-like protein [Streptococcus suis ST1]
gi|319757235|gb|ADV69177.1| Holliday junction resolvase-like protein [Streptococcus suis JS14]
gi|329306139|gb|AEB80555.1| Holliday junction resolvase-like protein [Streptococcus suis ST3]
gi|353735342|gb|AER16351.1| Holliday junction resolvase-like protein [Streptococcus suis D9]
gi|353737410|gb|AER18418.1| Holliday junction resolvase-like protein [Streptococcus suis D12]
gi|353739501|gb|AER20508.1| Holliday junction resolvase-like protein [Streptococcus suis ST1]
gi|354984503|gb|AER43401.1| Holliday junction resolvase-like protein [Streptococcus suis A7]
Length = 136
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 3/135 (2%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLDVG K VG++ISDP A L ++ + + E L+ ++ ++ F+VG P
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIPIDEEKGEFGLERLTELVEQYKVDKFVVGLPK 60
Query: 85 NRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYKTI 143
N + V+ DL + + Y +E T+ E +L+ D+ + K +
Sbjct: 61 NMNNTSGPRVEASQAYGDLLTERY--KLPVDYQDERLTTVAAERMLIEQADISRGKRKKV 118
Query: 144 LDKFAAVGILQEYLD 158
+DK AA ILQ YLD
Sbjct: 119 IDKLAAQLILQNYLD 133
>gi|374603737|ref|ZP_09676712.1| Holliday junction resolvase YqgF [Paenibacillus dendritiformis
C454]
gi|374390617|gb|EHQ61964.1| Holliday junction resolvase YqgF [Paenibacillus dendritiformis
C454]
Length = 138
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 4/141 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
+ LGLD GD+ +G+++SD A L V++R+K DL +I E +E ++G
Sbjct: 2 KILGLDYGDRKIGVAVSDAFGWTAQGLEVIVRRKPEDDL--RRIGDIIKEHGVEEIVIGL 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N N + ++ + K+ + W+E ++ E L D+ + +
Sbjct: 60 PKN--MNGTIGPRGEISMSYAEVLKQSFGLPVHLWDERLSTVSAERALLEADVSRKKRRQ 117
Query: 143 ILDKFAAVGILQEYLDNANRK 163
++DK AA ILQ YLD +R+
Sbjct: 118 VIDKMAATIILQTYLDYQSRR 138
>gi|392429478|ref|YP_006470492.1| Holliday junction resolvase-like protein [Streptococcus intermedius
JTH08]
gi|391758627|dbj|BAM24244.1| Holliday junction resolvase-like protein [Streptococcus intermedius
JTH08]
Length = 136
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 3/135 (2%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLDVG K VG++ISDP A L ++ + + + L+ E+ +E F+VG P
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIPIDEEKEEFGFDRLSELVREYKVEKFVVGLPK 60
Query: 85 NRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYKTI 143
N + V+ + ++L + Y +E T+ E +L+ D+ + K +
Sbjct: 61 NMNNTSGPRVEASRAYG--AKIEQLFHLPVEYQDERLTTVAAERMLIEQADVSRKKRKKV 118
Query: 144 LDKFAAVGILQEYLD 158
+DK AA ILQ YLD
Sbjct: 119 IDKLAAQLILQNYLD 133
>gi|427392356|ref|ZP_18886361.1| RNAse H-fold protein YqgF [Alloiococcus otitis ATCC 51267]
gi|425731317|gb|EKU94135.1| RNAse H-fold protein YqgF [Alloiococcus otitis ATCC 51267]
Length = 139
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 9/140 (6%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG+++SDP A L + +N + + +L+ + + +VG
Sbjct: 2 RVMGLDVGSKTVGIAVSDPLGWTAQSLETIKINENRKEFGLDQVCALVEAYEVSKVVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTSKGV-ELLLNPLDLHPV 138
P N + D Q L+ + LE+ + Y +E T+ V +++ DL
Sbjct: 62 PKNMDGSIGDRAQAS-----LNYGRMLEEACGVAVTYQDERLTTMQVNRMMIEEGDLSRK 116
Query: 139 EYKTILDKFAAVGILQEYLD 158
+ K ++DK AA ILQ Y+D
Sbjct: 117 KRKQLVDKLAAQAILQTYMD 136
>gi|288906372|ref|YP_003431594.1| hypothetical protein GALLO_2188 [Streptococcus gallolyticus UCN34]
gi|306832418|ref|ZP_07465571.1| crossover junction endodeoxyribonuclease [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
gi|325979385|ref|YP_004289101.1| putative holliday junction resolvase [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
gi|386338862|ref|YP_006035031.1| putative holliday junction resolvase [Streptococcus gallolyticus
subsp. gallolyticus ATCC 43143]
gi|288733098|emb|CBI14679.1| Conserved hypothetical protein [Streptococcus gallolyticus UCN34]
gi|304425458|gb|EFM28577.1| crossover junction endodeoxyribonuclease [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
gi|325179313|emb|CBZ49357.1| putative holliday junction resolvase [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
gi|334281498|dbj|BAK29072.1| putative holliday junction resolvase [Streptococcus gallolyticus
subsp. gallolyticus ATCC 43143]
Length = 139
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 5/138 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A + ++ + + E L+ ++ ++ F+VG
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGVEIIRIDEEAGEFGFERLEELVKQYKVDKFVVGL 61
Query: 83 PFNRQQNAADAVQV-KLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEY 140
P N V+ K + D ++ +L ++ Y +E T+ E +L+ D+ +
Sbjct: 62 PKNMNNTEGPRVEASKAYGDKIN---ELFNIPVDYQDERLTTVQAERMLVEQADVSRGKR 118
Query: 141 KTILDKFAAVGILQEYLD 158
K ++DK AA ILQ YLD
Sbjct: 119 KKVIDKLAAQLILQNYLD 136
>gi|322386556|ref|ZP_08060183.1| crossover junction endodeoxyribonuclease [Streptococcus cristatus
ATCC 51100]
gi|417921553|ref|ZP_12565044.1| RNAse H domain protein, YqgF family [Streptococcus cristatus ATCC
51100]
gi|321269475|gb|EFX52408.1| crossover junction endodeoxyribonuclease [Streptococcus cristatus
ATCC 51100]
gi|342834236|gb|EGU68511.1| RNAse H domain protein, YqgF family [Streptococcus cristatus ATCC
51100]
Length = 139
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 70/138 (50%), Gaps = 5/138 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ + E L+ ++ ++ F++G
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIQIDEEKEQFGFERLTELVEQYKVDKFVLGL 61
Query: 83 PFNRQQNAADAVQV-KLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEY 140
P N + V+ K + + ++ +L + Y +E T+ E +L+ D+ +
Sbjct: 62 PKNMNNTSGPRVEASKAYGEKIA---QLFQIPVEYQDERLTTVAAERMLIEQADVSRSKR 118
Query: 141 KTILDKFAAVGILQEYLD 158
K ++DK AA ILQ YLD
Sbjct: 119 KKVIDKLAAQLILQNYLD 136
>gi|77408149|ref|ZP_00784895.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
COH1]
gi|77173249|gb|EAO76372.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
COH1]
Length = 136
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 3/135 (2%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLDVG K VG++ISDP A L ++ + + + + L+ E+ ++ F+VG P
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEESGNFGFDRLAELVKEYKVDKFVVGLPK 60
Query: 85 NRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYKTI 143
N + V+ D +L ++ Y +E T+ E +L+ D+ + K +
Sbjct: 61 NMNNTSGPRVEASQVYGD--KITELFNLPVEYQDERLTTVQAERMLVEQADISRGKRKKV 118
Query: 144 LDKFAAVGILQEYLD 158
+DK AA ILQ YLD
Sbjct: 119 IDKLAAQLILQNYLD 133
>gi|229163335|ref|ZP_04291287.1| Holliday junction resolvase [Bacillus cereus R309803]
gi|423417695|ref|ZP_17394784.1| RNAse H-fold protein YqgF [Bacillus cereus BAG3X2-1]
gi|228620116|gb|EEK76990.1| Holliday junction resolvase [Bacillus cereus R309803]
gi|401106866|gb|EJQ14823.1| RNAse H-fold protein YqgF [Bacillus cereus BAG3X2-1]
Length = 137
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 8/140 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K VG+++SD A L + + + L+ ++N++ +VG
Sbjct: 2 RILGLDVGTKTVGVAMSDEMGWTAQGLETIRINEERGHFGFDRISELVKQYNVDKIVVGL 61
Query: 83 PFNRQQNAA---DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
P N +A Q F ++L ++L + W+E ++ E LL D+ +
Sbjct: 62 PKNMNGTIGPRGEACQ--QFAENL---RELLQLDVVMWDERLSTMAAERLLISADVSRKK 116
Query: 140 YKTILDKFAAVGILQEYLDN 159
K ++DK AAV ILQ +LD+
Sbjct: 117 RKQVIDKMAAVVILQGFLDS 136
>gi|451818071|ref|YP_007454272.1| putative holliday junction resolvase [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451784050|gb|AGF55018.1| putative holliday junction resolvase [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 138
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 71/141 (50%), Gaps = 4/141 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K +G+++SDP A L+ + R D+ ++ ++ +++ + ++G
Sbjct: 2 RILGLDVGQKTIGVAVSDPLGFTAQGLTTIRRTNKEKDI--QEIKNFCDQYDAKVILIGL 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N + ++ + L + ++K +W+E T+ + DL + K
Sbjct: 60 PKNMNGTIGPSGEIIMAFGKLLEEELKLEVK--FWDERLTTVAAHRAMLEADLSRNKRKK 117
Query: 143 ILDKFAAVGILQEYLDNANRK 163
I+DK A+ ILQ YLD +RK
Sbjct: 118 IVDKVASTFILQGYLDMISRK 138
>gi|407477758|ref|YP_006791635.1| Holliday junction resolvase [Exiguobacterium antarcticum B7]
gi|407061837|gb|AFS71027.1| Holliday junction resolvase [Exiguobacterium antarcticum B7]
Length = 140
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 4/141 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K +G+++SD A + + + + + ++I E+ +E ++G+
Sbjct: 3 RAIGLDVGSKTIGVAVSDLMGWTAQGIETIKWTEPDYPVAFKRLEAIIKEYGVEIIVIGH 62
Query: 83 PFNRQQNAADAVQV-KLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + + + F ++ A L + +E T+ E +L D+ + K
Sbjct: 63 PKNMNGSIGPRAEASEAFAREIEAHTGLASVLV---DERLTTMQAERMLIDADVSRKKRK 119
Query: 142 TILDKFAAVGILQEYLDNANR 162
++DK AAV ILQ YLD ANR
Sbjct: 120 LVIDKMAAVMILQSYLDRANR 140
>gi|381184498|ref|ZP_09893096.1| Holliday junction resolvase-like protein [Listeriaceae bacterium
TTU M1-001]
gi|380315608|gb|EIA19129.1| Holliday junction resolvase-like protein [Listeriaceae bacterium
TTU M1-001]
Length = 138
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 63/137 (45%), Gaps = 4/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISD A + + ++ L S + +E IVG
Sbjct: 2 RIMGLDVGSKTVGVAISDALGWTAQGIETVAINEDAKQFGYNRIAELASTYEVEKIIVGL 61
Query: 83 PFNRQQN-AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N A K + + L +E + W+E T++ E L D+ + K
Sbjct: 62 PKNMNNTLGPRAESSKKYAEVLQNRTGIEVL---LWDERLTTQAAERTLLEADVSRKKRK 118
Query: 142 TILDKFAAVGILQEYLD 158
++DK AAV ILQ YLD
Sbjct: 119 QVIDKLAAVMILQSYLD 135
>gi|329117501|ref|ZP_08246218.1| RNAse H domain protein, YqgF family [Streptococcus parauberis NCFD
2020]
gi|333906038|ref|YP_004479909.1| Holliday junction resolvase [Streptococcus parauberis KCTC 11537]
gi|326907906|gb|EGE54820.1| RNAse H domain protein, YqgF family [Streptococcus parauberis NCFD
2020]
gi|333121303|gb|AEF26237.1| Holliday junction resolvase [Streptococcus parauberis KCTC 11537]
Length = 139
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 71/137 (51%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ ++ + L++++ ++ F+VG
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEDKKEFGLARLEELVNQYKVDKFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N ++ V+ +L ++ ++ Y +E T+ E +L+ D+ + K
Sbjct: 62 PKNMNNSSGPRVEASQAYGNL--IQEQFNIPVEYQDERLTTVQAERMLIEQADISRGKRK 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 120 KVIDKLAAQLILQNYLD 136
>gi|317495258|ref|ZP_07953628.1| hypothetical protein HMPREF0432_00230 [Gemella morbillorum M424]
gi|316914680|gb|EFV36156.1| hypothetical protein HMPREF0432_00230 [Gemella morbillorum M424]
Length = 141
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 70/136 (51%), Gaps = 1/136 (0%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLD G K +G+++SD A + + + D + + L++E+N+ +VG
Sbjct: 5 RIMGLDYGSKTIGVAVSDLLGMTAQGVETININEQVKDFKIKRIKELVNEYNIGKIVVGL 64
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N + + L+ ++ KK++ ++ +E T+ G E +L ++ + K
Sbjct: 65 PKNMDNSIGFRGEATLYFVEV-LKKKIKSVEVILQDERLTTMGAERVLLEANVSRKKRKD 123
Query: 143 ILDKFAAVGILQEYLD 158
++DK AAV ILQ YLD
Sbjct: 124 VIDKMAAVLILQTYLD 139
>gi|378717739|ref|YP_005282628.1| putative holliday junction resolvase [Gordonia polyisoprenivorans
VH2]
gi|375752442|gb|AFA73262.1| putative holliday junction resolvase [Gordonia polyisoprenivorans
VH2]
Length = 151
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 70/144 (48%), Gaps = 10/144 (6%)
Query: 19 SKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNT---IDLMAEDFRSLISEFNL 75
++RGR LG+DVG +G+++ DP +A+P+ + R + + +AE L +E+ +
Sbjct: 11 TRRGRRLGIDVGSVRIGVAVCDPDGILATPVETVRRDTSGGSDVTRIAE----LAAEYEV 66
Query: 76 EGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLD 134
G ++G P R + + F D L T + + Y +E T+ L
Sbjct: 67 VGVVIGLPKTLRNTDGVAVAAAREFGDAL--TTAIAPVLVEYVDERLTTVTAAQALRASG 124
Query: 135 LHPVEYKTILDKFAAVGILQEYLD 158
++++D+ AAV ILQ +LD
Sbjct: 125 RSAKASRSVIDQAAAVAILQGWLD 148
>gi|55821927|ref|YP_140369.1| Holliday junction resolvase-like protein [Streptococcus
thermophilus LMG 18311]
gi|55823846|ref|YP_142287.1| Holliday junction resolvase-like protein [Streptococcus
thermophilus CNRZ1066]
gi|445383922|ref|ZP_21427481.1| Holliday junction resolvase-like protein [Streptococcus
thermophilus MTCC 5460]
gi|445396320|ref|ZP_21429216.1| Holliday junction resolvase-like protein [Streptococcus
thermophilus MTCC 5461]
gi|62900908|sp|Q5LXP0.1|RUVX_STRT1 RecName: Full=Putative Holliday junction resolvase
gi|62900909|sp|Q5M292.1|RUVX_STRT2 RecName: Full=Putative Holliday junction resolvase
gi|55737912|gb|AAV61554.1| DNA recombination protein, putative [Streptococcus thermophilus LMG
18311]
gi|55739831|gb|AAV63472.1| DNA recombination protein, putative [Streptococcus thermophilus
CNRZ1066]
gi|444748146|gb|ELW73131.1| Holliday junction resolvase-like protein [Streptococcus
thermophilus MTCC 5461]
gi|444748175|gb|ELW73157.1| Holliday junction resolvase-like protein [Streptococcus
thermophilus MTCC 5460]
Length = 139
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 5/138 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A + ++ + + + L+ E+ ++ F+VG
Sbjct: 2 RVMGLDVGSKTVGVAISDPLGFTAQGVEIIKINEEAKEFGFDRLGELVKEYQVDKFVVGL 61
Query: 83 PFNRQQNAADAVQV-KLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEY 140
P N V+ K + D + K++ ++ Y +E T+ E +L+ D+ +
Sbjct: 62 PKNMNNTEGPRVEASKAYGDKI---KEIFNLPVDYQDERLTTVQAERMLVEQADVSRGKR 118
Query: 141 KTILDKFAAVGILQEYLD 158
K ++DK AA ILQ YLD
Sbjct: 119 KKVIDKLAAQLILQNYLD 136
>gi|294792100|ref|ZP_06757248.1| putative Holliday junction resolvase [Veillonella sp. 6_1_27]
gi|294793971|ref|ZP_06759108.1| putative Holliday junction resolvase [Veillonella sp. 3_1_44]
gi|294455541|gb|EFG23913.1| putative Holliday junction resolvase [Veillonella sp. 3_1_44]
gi|294457330|gb|EFG25692.1| putative Holliday junction resolvase [Veillonella sp. 6_1_27]
Length = 136
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 70/138 (50%), Gaps = 12/138 (8%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDF---RSLISEFNLEGFIVG 81
+ LDVG + +G++ SD A + + R + +DF + LISE+ + +VG
Sbjct: 1 MSLDVGSRTIGIACSDALLMTAQGIETIRRTS-----LEKDFNRLQELISEYEVHELVVG 55
Query: 82 YPFNRQQNAAD-AVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
P N + A + + F+ + K++ D+ YW+E ++ E L D+ +
Sbjct: 56 MPKNMNGTKGERAEKTEEFV---AKMKEVIDLPVTYWDERLSTVMAERQLIAADVSRKKR 112
Query: 141 KTILDKFAAVGILQEYLD 158
K+++DK AAV ILQ YLD
Sbjct: 113 KSVIDKMAAVVILQGYLD 130
>gi|357637629|ref|ZP_09135504.1| RNAse H domain protein, YqgF family [Streptococcus macacae NCTC
11558]
gi|357586083|gb|EHJ53286.1| RNAse H domain protein, YqgF family [Streptococcus macacae NCTC
11558]
Length = 139
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 74/143 (51%), Gaps = 15/143 (10%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDF-----RSLISEFNLEG 77
R +GLDVG K VG+++SDP A + ++ ID + E F L+ ++ +E
Sbjct: 2 RIMGLDVGSKTVGVAVSDPLGFTAQGVEII-----KIDEVKEKFGFQRLSELVEKYQVEK 56
Query: 78 FIVGYPFNRQQNAADAVQV-KLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDL 135
F+VG P N ++ V+ + + + L K+ D+ Y +E T+ E +L+ D+
Sbjct: 57 FVVGLPKNMNNSSGPRVEASQAYAEKL---KEYFDIPVDYQDERLTTVQAERMLVEQADI 113
Query: 136 HPVEYKTILDKFAAVGILQEYLD 158
+ K ++DK AA ILQ YLD
Sbjct: 114 SRGKRKKVIDKLAAQLILQNYLD 136
>gi|282882848|ref|ZP_06291453.1| putative Holliday junction resolvase [Peptoniphilus lacrimalis
315-B]
gi|300814171|ref|ZP_07094454.1| RNAse YqgF [Peptoniphilus sp. oral taxon 836 str. F0141]
gi|281297259|gb|EFA89750.1| putative Holliday junction resolvase [Peptoniphilus lacrimalis
315-B]
gi|300511828|gb|EFK39045.1| RNAse YqgF [Peptoniphilus sp. oral taxon 836 str. F0141]
Length = 147
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 71/140 (50%), Gaps = 6/140 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG+K++G++ISD IA+PL + R N + LI +++++ +VG
Sbjct: 3 RVLGLDVGEKWIGVAISDETFTIATPLETIERTSNK--EAYDKIHDLIEKYDVKKIVVGL 60
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N Q V+ F + L +LE Y +E T+ + +L + K
Sbjct: 61 PKNMNNTLGPTCQMVQKFSEKLKNKFRLE---LVYVDERMTTLMAKDVLMEASVRRENRK 117
Query: 142 TILDKFAAVGILQEYLDNAN 161
+DK AA IL+ Y+D+++
Sbjct: 118 KYVDKIAAAFILKTYMDSSD 137
>gi|152976801|ref|YP_001376318.1| Holliday junction resolvase-like protein [Bacillus cytotoxicus NVH
391-98]
gi|189046085|sp|A7GT65.1|RUVX_BACCN RecName: Full=Putative Holliday junction resolvase
gi|152025553|gb|ABS23323.1| Holliday junction resolvase YqgF [Bacillus cytotoxicus NVH 391-98]
Length = 137
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 2/137 (1%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K VG++ISD A L + + + L+ ++N++ +VG
Sbjct: 2 RILGLDVGTKTVGVAISDEMGWTAQGLETIKINEEREIFGFDRVSELVKQYNVDKIVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N N + + + ++L ++ W+E ++ E LL D+ + K
Sbjct: 62 PKN--MNGTIGPRGEACQRYAESLRELLQLEVILWDERLSTMAAERLLISADVSRKKRKQ 119
Query: 143 ILDKFAAVGILQEYLDN 159
++DK AAV ILQ YLD+
Sbjct: 120 VVDKMAAVVILQGYLDS 136
>gi|195978958|ref|YP_002124202.1| Holliday junction resolvase RvuC-like [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|195975663|gb|ACG63189.1| putative Holliday junction resolvase RvuC-like [Streptococcus equi
subsp. zooepidemicus MGCS10565]
Length = 136
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 3/135 (2%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLDVG K VG++ISDP A L ++ ++ D + L+ ++ ++ F++G P
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIKINEDKQDFGFDRLAELVKQYQVDRFVIGLPK 60
Query: 85 NRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYKTI 143
N + V+ D ++L + +Y +E T+ E +L+ D+ + K +
Sbjct: 61 NMNNTSGPRVEASKAYGD--RIEELFHIPVSYQDERLTTVEAERMLIEQADISRGKRKKV 118
Query: 144 LDKFAAVGILQEYLD 158
+DK AA ILQ YLD
Sbjct: 119 IDKLAAQLILQNYLD 133
>gi|188586393|ref|YP_001917938.1| Holliday junction resolvase YqgF [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|226731632|sp|B2A5J5.1|RUVX_NATTJ RecName: Full=Putative Holliday junction resolvase
gi|179351080|gb|ACB85350.1| Holliday junction resolvase YqgF [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 141
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 7/143 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +G D+G+ +G+++SD A +V+ R+ D+ E LI ++ + IVG
Sbjct: 2 RIMGFDLGEATIGVAVSDALQLTAQGKTVIKRQSLEKDI--EQVTKLIEDYQVSKLIVGL 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N N + +D + + ++ D+ +E TS+ E L D+ + K
Sbjct: 60 PKN--MNGSLGQMADQIMDFIKSLEQEVDIPIETVDERLTSRMAEQTLLEADVSRKKRKQ 117
Query: 143 ILDKFAAVGILQEYLDNANRKVN 165
++DK AAV ILQ YLD R+VN
Sbjct: 118 VIDKLAAVNILQTYLD---RQVN 137
>gi|326791231|ref|YP_004309052.1| Holliday junction resolvase [Clostridium lentocellum DSM 5427]
gi|326541995|gb|ADZ83854.1| Holliday junction resolvase [Clostridium lentocellum DSM 5427]
Length = 139
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 9/140 (6%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNT-IDLMAEDFRSLISEFNLEGFIVG 81
R LGLD G K G++ISDP A L ++ R+++ + + + + + +E ++G
Sbjct: 2 RILGLDFGTKTTGVAISDPMGWTAQGLEIIRRQEDEHLKATMKRIEEICTAYKVEKIVLG 61
Query: 82 YPFNRQQNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTSKGVELLLNPLDLHPV 138
P N + + L + KLE+ + W+E ++ E +L D+
Sbjct: 62 LPKNMNNTLGERGEKTLLFKE-----KLENKLKIPVETWDERLSTVAAEQVLLEADMSRK 116
Query: 139 EYKTILDKFAAVGILQEYLD 158
+ K ++DK AA ILQ YLD
Sbjct: 117 KRKNVIDKLAATIILQNYLD 136
>gi|392394479|ref|YP_006431081.1| RNAse H-fold protein YqgF [Desulfitobacterium dehalogenans ATCC
51507]
gi|390525557|gb|AFM01288.1| RNAse H-fold protein YqgF [Desulfitobacterium dehalogenans ATCC
51507]
Length = 142
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 69/137 (50%), Gaps = 8/137 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLD G++ +G+++SD A + + R K + E+ ++++ ++ ++ ++GY
Sbjct: 2 RVMGLDFGERTIGVAVSDAMLLTAQGIKTIRRSKKEL----EELKTILQDYEVDHIVLGY 57
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLE-DMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N Q ++ + K E + W+E ++ G + L D+ + K
Sbjct: 58 PKNMNGTLGPRAQA---TEEFAQILKEEFGLPVTLWDERLSTMGAQRSLLEADVSRAKRK 114
Query: 142 TILDKFAAVGILQEYLD 158
++DK AAV ILQ YLD
Sbjct: 115 QVIDKMAAVFILQGYLD 131
>gi|336065168|ref|YP_004560027.1| putative holliday junction resolvase [Streptococcus pasteurianus
ATCC 43144]
gi|334283368|dbj|BAK30941.1| putative holliday junction resolvase [Streptococcus pasteurianus
ATCC 43144]
Length = 139
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 5/138 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A + ++ + + E L+ ++ ++ F+VG
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGVEIVRIDEEAGEFGFERLEELVKQYKVDKFVVGL 61
Query: 83 PFNRQQNAADAVQV-KLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEY 140
P N V+ K + D ++ +L ++ Y +E T+ E +L+ D+ +
Sbjct: 62 PKNMNNTEGPRVEASKAYGDKIN---ELFNIPVDYQDERLTTVQAERMLVEQADVSRGKR 118
Query: 141 KTILDKFAAVGILQEYLD 158
K ++DK AA ILQ YLD
Sbjct: 119 KKVIDKLAAQLILQNYLD 136
>gi|289168746|ref|YP_003447015.1| holiday junction resolvase [Streptococcus mitis B6]
gi|288908313|emb|CBJ23155.1| holiday junction resolvase [Streptococcus mitis B6]
Length = 139
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 9/140 (6%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ + + + L+ + +E F+VG
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTSKGVE-LLLNPLDLHPV 138
P N + V+ + KLE+ + Y +E T+ E +L+ D+
Sbjct: 62 PKNMNNTSGPRVEAS-----QAYGAKLEELFSLPVDYQDERLTTVAAERMLIEQADISRN 116
Query: 139 EYKTILDKFAAVGILQEYLD 158
+ K ++DK AA ILQ YLD
Sbjct: 117 KRKKVIDKLAAQLILQNYLD 136
>gi|239627761|ref|ZP_04670792.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239517907|gb|EEQ57773.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 150
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 5/139 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRK-KNTIDLMAEDFRSLISEFNLEGFIVG 81
R +GLD G K VG+++ DP A + + RK +N + +LI ++ +E ++G
Sbjct: 4 RIMGLDFGSKTVGVAVCDPLGITAQTVETITRKDENKLRQTLARIEALIGQYEIERIVLG 63
Query: 82 YPFNRQQNAAD-AVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
YP N + AV+ + F L ++ + W+E T+ +L +
Sbjct: 64 YPKNMNNTLGERAVKTEEFKTSL---ERRTGLPVVLWDERLTTVAASRVLIESGVRREHR 120
Query: 141 KTILDKFAAVGILQEYLDN 159
K +D+ AA ILQ YLD+
Sbjct: 121 KESVDQIAAAMILQGYLDS 139
>gi|402815556|ref|ZP_10865148.1| putative holliday junction resolvase [Paenibacillus alvei DSM 29]
gi|402506596|gb|EJW17119.1| putative holliday junction resolvase [Paenibacillus alvei DSM 29]
Length = 138
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 4/141 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
+ LGLD GD+ +G++ISD A L V+ R+K DL + ++ E +E ++G
Sbjct: 2 KILGLDYGDRRIGVAISDAFGWTAQGLEVIERRKPEDDL--KRLGDIVKEHGVEAIVLGL 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N N + +L + K+ + W+E ++ E L D+ + +
Sbjct: 60 PKN--MNGTVGPRGELSMSFAEQLKQSFGLPVHLWDERLSTVSAERTLLEADVSRKKRRQ 117
Query: 143 ILDKFAAVGILQEYLDNANRK 163
++DK AA ILQ YLD +R+
Sbjct: 118 VIDKMAATIILQTYLDYQSRR 138
>gi|419767612|ref|ZP_14293762.1| RNAse H domain protein, YqgF family [Streptococcus mitis SK579]
gi|383352976|gb|EID30606.1| RNAse H domain protein, YqgF family [Streptococcus mitis SK579]
Length = 139
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 9/140 (6%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ + + + L+ + +E F+VG
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDAYKVERFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTSKGVE-LLLNPLDLHPV 138
P N + V+ + KLE+ + Y +E T+ E +L+ D+
Sbjct: 62 PKNMNNTSGPRVEAS-----QAYGTKLEELFGLPVDYQDERLTTVAAERMLIEQADISRN 116
Query: 139 EYKTILDKFAAVGILQEYLD 158
+ K ++DK AA ILQ YLD
Sbjct: 117 KRKKVIDKLAAQLILQNYLD 136
>gi|417860232|ref|ZP_12505288.1| hypothetical protein Agau_C201520 [Agrobacterium tumefaciens F2]
gi|338823296|gb|EGP57264.1| hypothetical protein Agau_C201520 [Agrobacterium tumefaciens F2]
Length = 159
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 6/135 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+G K +GL++SD + A+P VL R K T D AE + + + FI+G P N
Sbjct: 21 GLDLGTKTIGLAMSDLSRRFATPRPVLKRVKFTQD--AEVLLAFAEKEKVAAFIIGLPMN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
+A VQ + F+ + L + +W+E ++ E L +D+ + +
Sbjct: 79 MDGSAGPRVQATRAFVRTMGEKTAL---PFIFWDERLSTVAAERALLEMDVSRAKRAERI 135
Query: 145 DKFAAVGILQEYLDN 159
D AA ILQ LD
Sbjct: 136 DSAAASFILQGALDR 150
>gi|218899555|ref|YP_002447966.1| Holliday junction resolvase [Bacillus cereus G9842]
gi|228902914|ref|ZP_04067055.1| Holliday junction resolvase [Bacillus thuringiensis IBL 4222]
gi|228910222|ref|ZP_04074040.1| Holliday junction resolvase [Bacillus thuringiensis IBL 200]
gi|228967461|ref|ZP_04128490.1| Holliday junction resolvase [Bacillus thuringiensis serovar sotto
str. T04001]
gi|229098858|ref|ZP_04229794.1| Holliday junction resolvase [Bacillus cereus Rock3-29]
gi|229105020|ref|ZP_04235674.1| Holliday junction resolvase [Bacillus cereus Rock3-28]
gi|402564136|ref|YP_006606860.1| Holliday junction resolvase-like protein [Bacillus thuringiensis
HD-771]
gi|407706913|ref|YP_006830498.1| flagellar motor protein MotB [Bacillus thuringiensis MC28]
gi|423358578|ref|ZP_17336081.1| RNAse H-fold protein YqgF [Bacillus cereus VD022]
gi|423377758|ref|ZP_17355042.1| RNAse H-fold protein YqgF [Bacillus cereus BAG1O-2]
gi|423440866|ref|ZP_17417772.1| RNAse H-fold protein YqgF [Bacillus cereus BAG4X2-1]
gi|423448966|ref|ZP_17425845.1| RNAse H-fold protein YqgF [Bacillus cereus BAG5O-1]
gi|423457366|ref|ZP_17434163.1| RNAse H-fold protein YqgF [Bacillus cereus BAG5X2-1]
gi|423463930|ref|ZP_17440698.1| RNAse H-fold protein YqgF [Bacillus cereus BAG6O-1]
gi|423533294|ref|ZP_17509712.1| RNAse H-fold protein YqgF [Bacillus cereus HuB2-9]
gi|423541451|ref|ZP_17517842.1| RNAse H-fold protein YqgF [Bacillus cereus HuB4-10]
gi|423547687|ref|ZP_17524045.1| RNAse H-fold protein YqgF [Bacillus cereus HuB5-5]
gi|423561146|ref|ZP_17537422.1| RNAse H-fold protein YqgF [Bacillus cereus MSX-A1]
gi|423622528|ref|ZP_17598306.1| RNAse H-fold protein YqgF [Bacillus cereus VD148]
gi|434377553|ref|YP_006612197.1| Holliday junction resolvase-like protein [Bacillus thuringiensis
HD-789]
gi|226725485|sp|B7IYP0.1|RUVX_BACC2 RecName: Full=Putative Holliday junction resolvase
gi|218541329|gb|ACK93723.1| conserved hypothetical protein TIGR00250 [Bacillus cereus G9842]
gi|228678397|gb|EEL32620.1| Holliday junction resolvase [Bacillus cereus Rock3-28]
gi|228684531|gb|EEL38473.1| Holliday junction resolvase [Bacillus cereus Rock3-29]
gi|228792238|gb|EEM39811.1| Holliday junction resolvase [Bacillus thuringiensis serovar sotto
str. T04001]
gi|228849386|gb|EEM94222.1| Holliday junction resolvase [Bacillus thuringiensis IBL 200]
gi|228856698|gb|EEN01217.1| Holliday junction resolvase [Bacillus thuringiensis IBL 4222]
gi|401084450|gb|EJP92696.1| RNAse H-fold protein YqgF [Bacillus cereus VD022]
gi|401129560|gb|EJQ37243.1| RNAse H-fold protein YqgF [Bacillus cereus BAG5O-1]
gi|401147750|gb|EJQ55243.1| RNAse H-fold protein YqgF [Bacillus cereus BAG5X2-1]
gi|401172639|gb|EJQ79860.1| RNAse H-fold protein YqgF [Bacillus cereus HuB4-10]
gi|401179408|gb|EJQ86581.1| RNAse H-fold protein YqgF [Bacillus cereus HuB5-5]
gi|401201403|gb|EJR08268.1| RNAse H-fold protein YqgF [Bacillus cereus MSX-A1]
gi|401260648|gb|EJR66816.1| RNAse H-fold protein YqgF [Bacillus cereus VD148]
gi|401636024|gb|EJS53778.1| RNAse H-fold protein YqgF [Bacillus cereus BAG1O-2]
gi|401792788|gb|AFQ18827.1| Holliday junction resolvase-like protein [Bacillus thuringiensis
HD-771]
gi|401876110|gb|AFQ28277.1| Holliday junction resolvase-like protein [Bacillus thuringiensis
HD-789]
gi|402417527|gb|EJV49827.1| RNAse H-fold protein YqgF [Bacillus cereus BAG4X2-1]
gi|402420197|gb|EJV52468.1| RNAse H-fold protein YqgF [Bacillus cereus BAG6O-1]
gi|402463513|gb|EJV95213.1| RNAse H-fold protein YqgF [Bacillus cereus HuB2-9]
gi|407384598|gb|AFU15099.1| Holliday junction resolvase [Bacillus thuringiensis MC28]
Length = 137
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 8/140 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K VG+++SD A L + + + L+ ++N++ +VG
Sbjct: 2 RILGLDVGTKTVGVAMSDEMGWTAQGLETIKINEERGHFGFDRISELVKQYNVDKIVVGL 61
Query: 83 PFNRQQNAA---DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
P N +A Q F ++L ++L + W+E ++ E LL D+ +
Sbjct: 62 PKNMNGTIGPRGEACQ--QFAENL---RELLQLDVVMWDERLSTMAAERLLISADVSRKK 116
Query: 140 YKTILDKFAAVGILQEYLDN 159
K ++DK AAV ILQ +LD+
Sbjct: 117 RKQVIDKMAAVVILQGFLDS 136
>gi|430003253|emb|CCF19038.1| putative Holliday junction resolvase [Rhizobium sp.]
Length = 163
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 6/135 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+G K +G+++SD + ASP VL R K T D AE + + + FI+G P N
Sbjct: 21 GLDLGTKTIGIAMSDLGRRFASPRPVLRRTKFTKD--AELLLAFAEKEKVGAFIIGLPMN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
+A VQ + F+ + L + +W+E ++ E L +D+ + +
Sbjct: 79 MDGSAGPRVQATRAFVRSMGDKTAL---PFVFWDERLSTVAAERALLEMDVSRAKRAERI 135
Query: 145 DKFAAVGILQEYLDN 159
D AA ILQ LD
Sbjct: 136 DSAAASFILQGALDR 150
>gi|429735225|ref|ZP_19269194.1| RNAse H domain protein, YqgF family [Selenomonas sp. oral taxon 138
str. F0429]
gi|429159337|gb|EKY01852.1| RNAse H domain protein, YqgF family [Selenomonas sp. oral taxon 138
str. F0429]
Length = 137
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 75/144 (52%), Gaps = 8/144 (5%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+ LD+GD +G+++SD A + + R + + DL + +L+ E+ + F+ G P
Sbjct: 1 MSLDIGDATIGIAVSDLLGLTAQGVETIRRTELSADL--DRLNALVQEYEVAAFVAGLPK 58
Query: 85 NRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143
+ + + + V+ F+ D A ++ ++ YW+E ++ L D+ + + +
Sbjct: 59 HMNGDEGERCEIVRAFMAD--AAQRFPTLEIHYWDERLSTVAASRALIEGDVSRKKRRKV 116
Query: 144 LDKFAAVGILQEYLDNANRKVNLK 167
+DK AAV ILQ +LD R+ +LK
Sbjct: 117 IDKMAAVYILQGFLD---RQQHLK 137
>gi|307708049|ref|ZP_07644517.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261]
gi|322377241|ref|ZP_08051733.1| putative Holliday junction resolvase [Streptococcus sp. M334]
gi|417847695|ref|ZP_12493657.1| RNAse H domain protein, YqgF family [Streptococcus mitis SK1073]
gi|417848767|ref|ZP_12494699.1| RNAse H domain protein, YqgF family [Streptococcus mitis SK1080]
gi|417923441|ref|ZP_12566905.1| RNAse H domain protein, YqgF family [Streptococcus mitis SK569]
gi|418967886|ref|ZP_13519520.1| RNAse H domain protein, YqgF family [Streptococcus mitis SK616]
gi|418977437|ref|ZP_13525255.1| RNAse H domain protein, YqgF family [Streptococcus mitis SK575]
gi|307615834|gb|EFN95039.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261]
gi|321281954|gb|EFX58962.1| putative Holliday junction resolvase [Streptococcus sp. M334]
gi|339456529|gb|EGP69120.1| RNAse H domain protein, YqgF family [Streptococcus mitis SK1073]
gi|339457515|gb|EGP70082.1| RNAse H domain protein, YqgF family [Streptococcus mitis SK1080]
gi|342836826|gb|EGU71030.1| RNAse H domain protein, YqgF family [Streptococcus mitis SK569]
gi|383342012|gb|EID20253.1| RNAse H domain protein, YqgF family [Streptococcus mitis SK616]
gi|383349878|gb|EID27795.1| RNAse H domain protein, YqgF family [Streptococcus mitis SK575]
Length = 139
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 9/140 (6%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ + + + L+ + +E F+VG
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTSKGVE-LLLNPLDLHPV 138
P N + V+ + KLE+ + Y +E T+ E +L+ D+
Sbjct: 62 PKNMNNTSGPRVEAS-----QAYGAKLEELFGLPVDYQDERLTTVAAERMLIEQADISRN 116
Query: 139 EYKTILDKFAAVGILQEYLD 158
+ K ++DK AA ILQ YLD
Sbjct: 117 KRKKVIDKLAAQLILQNYLD 136
>gi|126698882|ref|YP_001087779.1| Holliday junction resolvase-like protein [Clostridium difficile
630]
gi|254974830|ref|ZP_05271302.1| putative holliday junction resolvase [Clostridium difficile
QCD-66c26]
gi|255092218|ref|ZP_05321696.1| putative holliday junction resolvase [Clostridium difficile CIP
107932]
gi|255100303|ref|ZP_05329280.1| putative holliday junction resolvase [Clostridium difficile
QCD-63q42]
gi|255306242|ref|ZP_05350414.1| putative holliday junction resolvase [Clostridium difficile ATCC
43255]
gi|255313957|ref|ZP_05355540.1| putative holliday junction resolvase [Clostridium difficile
QCD-76w55]
gi|255516637|ref|ZP_05384313.1| putative holliday junction resolvase [Clostridium difficile
QCD-97b34]
gi|255649736|ref|ZP_05396638.1| putative holliday junction resolvase [Clostridium difficile
QCD-37x79]
gi|260682892|ref|YP_003214177.1| holliday junction resolvase [Clostridium difficile CD196]
gi|260686490|ref|YP_003217623.1| holliday junction resolvase [Clostridium difficile R20291]
gi|306519845|ref|ZP_07406192.1| putative Holliday junction resolvase [Clostridium difficile
QCD-32g58]
gi|384360481|ref|YP_006198333.1| putative Holliday junction resolvase [Clostridium difficile BI1]
gi|423082326|ref|ZP_17070918.1| RNAse H domain protein, YqgF family [Clostridium difficile
002-P50-2011]
gi|423087718|ref|ZP_17076104.1| RNAse H domain protein, YqgF family [Clostridium difficile
050-P50-2011]
gi|423090872|ref|ZP_17079158.1| RNAse H domain protein, YqgF family [Clostridium difficile
70-100-2010]
gi|118597204|sp|Q18BF1.1|RUVX_CLOD6 RecName: Full=Putative Holliday junction resolvase
gi|115250319|emb|CAJ68141.1| putative Holliday junction resolvase [Clostridium difficile 630]
gi|260209055|emb|CBA62181.1| putative holliday junction resolvase [Clostridium difficile CD196]
gi|260212506|emb|CBE03438.1| putative holliday junction resolvase [Clostridium difficile R20291]
gi|357544032|gb|EHJ26038.1| RNAse H domain protein, YqgF family [Clostridium difficile
050-P50-2011]
gi|357548652|gb|EHJ30512.1| RNAse H domain protein, YqgF family [Clostridium difficile
002-P50-2011]
gi|357555987|gb|EHJ37609.1| RNAse H domain protein, YqgF family [Clostridium difficile
70-100-2010]
Length = 141
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 4/137 (2%)
Query: 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 81
GR +GLDVGDK +G+++SD A + + R D+ E+ +++I E + + G
Sbjct: 4 GRIMGLDVGDKTIGVAVSDLMGLTAQGVKTIKRVGKKKDI--EELKAIIKEKQVNKIVSG 61
Query: 82 YPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N N Q + I K + +W+E ++ E L D+ + K
Sbjct: 62 LPKN--MNGTLGPQGEKVIKFCELVKAETGIDVEFWDERLSTVAAERSLLEADVSRQKRK 119
Query: 142 TILDKFAAVGILQEYLD 158
++D AAV ILQ YLD
Sbjct: 120 KVIDMLAAVIILQGYLD 136
>gi|15902220|ref|NP_357770.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
R6]
gi|116515819|ref|YP_815700.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
D39]
gi|148983593|ref|ZP_01816912.1| hypothetical protein CGSSp3BS71_05664 [Streptococcus pneumoniae
SP3-BS71]
gi|148987930|ref|ZP_01819393.1| hypothetical protein CGSSp6BS73_10471 [Streptococcus pneumoniae
SP6-BS73]
gi|148992772|ref|ZP_01822415.1| hypothetical protein CGSSp9BS68_03488 [Streptococcus pneumoniae
SP9-BS68]
gi|148996617|ref|ZP_01824335.1| hypothetical protein CGSSp11BS70_07975 [Streptococcus pneumoniae
SP11-BS70]
gi|149001702|ref|ZP_01826675.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
pneumoniae SP14-BS69]
gi|149005945|ref|ZP_01829674.1| hypothetical protein CGSSp18BS74_07200 [Streptococcus pneumoniae
SP18-BS74]
gi|149011064|ref|ZP_01832369.1| hypothetical protein CGSSp19BS75_11428 [Streptococcus pneumoniae
SP19-BS75]
gi|168483832|ref|ZP_02708784.1| conserved hypothetical protein [Streptococcus pneumoniae
CDC1873-00]
gi|168490343|ref|ZP_02714542.1| conserved hypothetical protein [Streptococcus pneumoniae SP195]
gi|168492149|ref|ZP_02716292.1| conserved hypothetical protein [Streptococcus pneumoniae
CDC0288-04]
gi|168576377|ref|ZP_02722260.1| conserved hypothetical protein [Streptococcus pneumoniae MLV-016]
gi|169834458|ref|YP_001693728.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
Hungary19A-6]
gi|182683176|ref|YP_001834923.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
CGSP14]
gi|225853803|ref|YP_002735315.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
JJA]
gi|225855961|ref|YP_002737472.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
P1031]
gi|225858051|ref|YP_002739561.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
70585]
gi|225860238|ref|YP_002741747.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
Taiwan19F-14]
gi|237649736|ref|ZP_04523988.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
CCRI 1974]
gi|237821434|ref|ZP_04597279.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
CCRI 1974M2]
gi|298255974|ref|ZP_06979560.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
str. Canada MDR_19A]
gi|303255107|ref|ZP_07341183.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
BS455]
gi|303259248|ref|ZP_07345226.1| hypothetical protein CGSSp9vBS293_02607 [Streptococcus pneumoniae
SP-BS293]
gi|303263331|ref|ZP_07349254.1| hypothetical protein CGSSpBS397_03156 [Streptococcus pneumoniae
BS397]
gi|307066873|ref|YP_003875839.1| putative endonuclease [Streptococcus pneumoniae AP200]
gi|342163006|ref|YP_004767645.1| Holliday junction resolvase-like protein [Streptococcus
pseudopneumoniae IS7493]
gi|383938913|ref|ZP_09992110.1| RNAse H domain protein, YqgF family [Streptococcus pseudopneumoniae
SK674]
gi|418088002|ref|ZP_12725167.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA47033]
gi|418104272|ref|ZP_12741332.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA44500]
gi|418136265|ref|ZP_12773109.1| hypothetical protein SPAR24_0161 [Streptococcus pneumoniae GA11663]
gi|418147679|ref|ZP_12784446.1| hypothetical protein SPAR34_0169 [Streptococcus pneumoniae GA13856]
gi|418156439|ref|ZP_12793158.1| hypothetical protein SPAR41_0217 [Streptococcus pneumoniae GA16833]
gi|418172602|ref|ZP_12809216.1| hypothetical protein SPAR67_0203 [Streptococcus pneumoniae GA41277]
gi|418201515|ref|ZP_12837947.1| hypothetical protein SPAR115_0231 [Streptococcus pneumoniae
GA52306]
gi|418220144|ref|ZP_12846801.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA47751]
gi|418228941|ref|ZP_12855552.1| putative Holliday junction resolvase [Streptococcus pneumoniae
EU-NP01]
gi|418973593|ref|ZP_13521572.1| RNAse H domain protein, YqgF family [Streptococcus pseudopneumoniae
ATCC BAA-960]
gi|419485704|ref|ZP_14025471.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA44128]
gi|419511659|ref|ZP_14051293.1| hypothetical protein SPAR149_0205 [Streptococcus pneumoniae
GA05578]
gi|419533646|ref|ZP_14073154.1| hypothetical protein SPAR46_0190 [Streptococcus pneumoniae GA17457]
gi|421205619|ref|ZP_15662686.1| hypothetical protein AMCSP20_000178 [Streptococcus pneumoniae
2090008]
gi|421306403|ref|ZP_15757050.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA60132]
gi|421310903|ref|ZP_15761516.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA58981]
gi|444390643|ref|ZP_21188558.1| RNAse H domain protein, YqgF family [Streptococcus pneumoniae
PCS70012]
gi|444392277|ref|ZP_21190014.1| RNAse H domain protein, YqgF family [Streptococcus pneumoniae
PCS81218]
gi|444404681|ref|ZP_21201627.1| RNAse H domain protein, YqgF family [Streptococcus pneumoniae
PNI0009]
gi|444409096|ref|ZP_21205696.1| RNAse H domain protein, YqgF family [Streptococcus pneumoniae
PNI0076]
gi|444414088|ref|ZP_21210394.1| RNAse H domain protein, YqgF family [Streptococcus pneumoniae
PNI0199]
gi|444417585|ref|ZP_21213615.1| RNAse H domain protein, YqgF family [Streptococcus pneumoniae
PNI0360]
gi|444421778|ref|ZP_21217448.1| RNAse H domain protein, YqgF family [Streptococcus pneumoniae
PNI0446]
gi|32130028|sp|Q8DRE2.1|RUVX_STRR6 RecName: Full=Putative Holliday junction resolvase
gi|122279414|sp|Q04MP8.1|RUVX_STRP2 RecName: Full=Putative Holliday junction resolvase
gi|226695306|sp|B1I8I5.1|RUVX_STRPI RecName: Full=Putative Holliday junction resolvase
gi|226695307|sp|B2IS28.1|RUVX_STRPS RecName: Full=Putative Holliday junction resolvase
gi|254767527|sp|C1CAK0.1|RUVX_STRP7 RecName: Full=Putative Holliday junction resolvase
gi|254767529|sp|C1CBZ4.1|RUVX_STRZJ RecName: Full=Putative Holliday junction resolvase
gi|254767530|sp|C1CI84.1|RUVX_STRZP RecName: Full=Putative Holliday junction resolvase
gi|254767531|sp|C1CP75.1|RUVX_STRZT RecName: Full=Putative Holliday junction resolvase
gi|15457719|gb|AAK98980.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
gi|116076395|gb|ABJ54115.1| conserved hypothetical protein TIGR00250 [Streptococcus pneumoniae
D39]
gi|147757192|gb|EDK64231.1| hypothetical protein CGSSp11BS70_07975 [Streptococcus pneumoniae
SP11-BS70]
gi|147760160|gb|EDK67149.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
pneumoniae SP14-BS69]
gi|147762301|gb|EDK69262.1| hypothetical protein CGSSp18BS74_07200 [Streptococcus pneumoniae
SP18-BS74]
gi|147764700|gb|EDK71630.1| hypothetical protein CGSSp19BS75_11428 [Streptococcus pneumoniae
SP19-BS75]
gi|147923740|gb|EDK74852.1| hypothetical protein CGSSp3BS71_05664 [Streptococcus pneumoniae
SP3-BS71]
gi|147926394|gb|EDK77467.1| hypothetical protein CGSSp6BS73_10471 [Streptococcus pneumoniae
SP6-BS73]
gi|147928498|gb|EDK79513.1| hypothetical protein CGSSp9BS68_03488 [Streptococcus pneumoniae
SP9-BS68]
gi|168996960|gb|ACA37572.1| conserved hypothetical protein [Streptococcus pneumoniae
Hungary19A-6]
gi|172042909|gb|EDT50955.1| conserved hypothetical protein [Streptococcus pneumoniae
CDC1873-00]
gi|182628510|gb|ACB89458.1| hypothetical protein SPCG_0206 [Streptococcus pneumoniae CGSP14]
gi|183571311|gb|EDT91839.1| conserved hypothetical protein [Streptococcus pneumoniae SP195]
gi|183573647|gb|EDT94175.1| conserved hypothetical protein [Streptococcus pneumoniae
CDC0288-04]
gi|183577826|gb|EDT98354.1| conserved hypothetical protein [Streptococcus pneumoniae MLV-016]
gi|225721840|gb|ACO17694.1| conserved hypothetical protein [Streptococcus pneumoniae 70585]
gi|225722223|gb|ACO18076.1| conserved hypothetical protein [Streptococcus pneumoniae JJA]
gi|225725306|gb|ACO21158.1| conserved hypothetical protein [Streptococcus pneumoniae P1031]
gi|225727488|gb|ACO23339.1| conserved hypothetical protein [Streptococcus pneumoniae
Taiwan19F-14]
gi|302597937|gb|EFL65007.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
BS455]
gi|302639666|gb|EFL70123.1| hypothetical protein CGSSpBS293_02607 [Streptococcus pneumoniae
SP-BS293]
gi|302647104|gb|EFL77328.1| hypothetical protein CGSSpBS397_03156 [Streptococcus pneumoniae
BS397]
gi|306408410|gb|ADM83837.1| predicted endonuclease [Streptococcus pneumoniae AP200]
gi|341932888|gb|AEL09785.1| Holliday junction resolvase-like protein [Streptococcus
pseudopneumoniae IS7493]
gi|353755679|gb|EHD36282.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA47033]
gi|353778706|gb|EHD59172.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA44500]
gi|353813877|gb|EHD94104.1| hypothetical protein SPAR34_0169 [Streptococcus pneumoniae GA13856]
gi|353825716|gb|EHE05880.1| hypothetical protein SPAR41_0217 [Streptococcus pneumoniae GA16833]
gi|353839301|gb|EHE19375.1| hypothetical protein SPAR67_0203 [Streptococcus pneumoniae GA41277]
gi|353868991|gb|EHE48874.1| hypothetical protein SPAR115_0231 [Streptococcus pneumoniae
GA52306]
gi|353877941|gb|EHE57780.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA47751]
gi|353891379|gb|EHE71135.1| putative Holliday junction resolvase [Streptococcus pneumoniae
EU-NP01]
gi|353903323|gb|EHE78847.1| hypothetical protein SPAR24_0161 [Streptococcus pneumoniae GA11663]
gi|379568608|gb|EHZ33587.1| hypothetical protein SPAR46_0190 [Streptococcus pneumoniae GA17457]
gi|379588613|gb|EHZ53453.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA44128]
gi|379636129|gb|EIA00687.1| hypothetical protein SPAR149_0205 [Streptococcus pneumoniae
GA05578]
gi|383347662|gb|EID25637.1| RNAse H domain protein, YqgF family [Streptococcus pseudopneumoniae
ATCC BAA-960]
gi|383714254|gb|EID70263.1| RNAse H domain protein, YqgF family [Streptococcus pseudopneumoniae
SK674]
gi|395578040|gb|EJG38568.1| hypothetical protein AMCSP20_000178 [Streptococcus pneumoniae
2090008]
gi|395910113|gb|EJH20987.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA60132]
gi|395913863|gb|EJH24712.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA58981]
gi|444257106|gb|ELU63444.1| RNAse H domain protein, YqgF family [Streptococcus pneumoniae
PCS70012]
gi|444263680|gb|ELU69831.1| RNAse H domain protein, YqgF family [Streptococcus pneumoniae
PCS81218]
gi|444276382|gb|ELU81944.1| RNAse H domain protein, YqgF family [Streptococcus pneumoniae
PNI0009]
gi|444280309|gb|ELU85680.1| RNAse H domain protein, YqgF family [Streptococcus pneumoniae
PNI0076]
gi|444283390|gb|ELU88588.1| RNAse H domain protein, YqgF family [Streptococcus pneumoniae
PNI0199]
gi|444283501|gb|ELU88698.1| RNAse H domain protein, YqgF family [Streptococcus pneumoniae
PNI0360]
gi|444288987|gb|ELU93875.1| RNAse H domain protein, YqgF family [Streptococcus pneumoniae
PNI0446]
Length = 139
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 9/140 (6%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ + + + L+ + +E F+VG
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTSKGVE-LLLNPLDLHPV 138
P N + V+ + KLE+ + Y +E T+ E +L+ D+
Sbjct: 62 PKNMNNTSGPRVEAS-----QAYGAKLEEFFGLPVDYQDERLTTVAAERMLIEQADISRN 116
Query: 139 EYKTILDKFAAVGILQEYLD 158
+ K ++DK AA ILQ YLD
Sbjct: 117 KRKKVIDKLAAQLILQNYLD 136
>gi|307711065|ref|ZP_07647487.1| conserved hypothetical protein [Streptococcus mitis SK321]
gi|307617027|gb|EFN96205.1| conserved hypothetical protein [Streptococcus mitis SK321]
Length = 136
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 3/135 (2%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLDVG K VG++ISDP A L ++ + + + L+ + +E F+VG P
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGLPK 60
Query: 85 NRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYKTI 143
N + V+ + ++L D+ Y +E T+ E +L+ D+ + K +
Sbjct: 61 NMNNTSGPRVEASQAYG--AKLEELFDLPVDYQDERLTTVAAERMLIEQADISRNKRKKV 118
Query: 144 LDKFAAVGILQEYLD 158
+DK AA ILQ YLD
Sbjct: 119 IDKLAAQLILQNYLD 133
>gi|440226288|ref|YP_007333379.1| putative Holliday junction resolvase [Rhizobium tropici CIAT 899]
gi|440037799|gb|AGB70833.1| putative Holliday junction resolvase [Rhizobium tropici CIAT 899]
Length = 223
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 6/135 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+G K +GL++SD + A+P VL R K T D A+ + + + F++G P N
Sbjct: 80 GLDLGTKTIGLAMSDLGRRFATPRPVLKRVKFTQD--AQTLLAFAEKEKVAAFVIGLPMN 137
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
+A VQ + F+ ++ L + +W+E ++ E L +D+ + +
Sbjct: 138 MDGSAGPRVQATRAFVRSMAEKTALP---FVFWDERLSTVAAERALLEMDVSRAKRAERI 194
Query: 145 DKFAAVGILQEYLDN 159
D AA ILQ LD
Sbjct: 195 DSAAASFILQGALDR 209
>gi|257867380|ref|ZP_05647033.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
gi|257873711|ref|ZP_05653364.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
gi|257877460|ref|ZP_05657113.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
gi|257801436|gb|EEV30366.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
gi|257807875|gb|EEV36697.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
gi|257811626|gb|EEV40446.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
Length = 140
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 70/141 (49%), Gaps = 3/141 (2%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLDVG + VG+++SDP A + ++ ++ + + L+ E+ + F+VG P
Sbjct: 1 MGLDVGSRTVGVAVSDPMGWTAQGIEIIRINEDEGNFGYDRLAELVKEYEVSRFVVGLPK 60
Query: 85 NRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYKTI 143
N + + +A ++ + Y +E T+ E +L+ + + K +
Sbjct: 61 NMNNTIGPRAEASMAYG--AAIEQQFGLPVVYQDERLTTVQAERMLVEQANTSRAKRKKV 118
Query: 144 LDKFAAVGILQEYLDNANRKV 164
+DK AAV ILQ YLD A +++
Sbjct: 119 IDKLAAVMILQNYLDGAGKQL 139
>gi|299822852|ref|ZP_07054738.1| crossover junction endodeoxyribonuclease [Listeria grayi DSM 20601]
gi|299816381|gb|EFI83619.1| crossover junction endodeoxyribonuclease [Listeria grayi DSM 20601]
Length = 138
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 64/140 (45%), Gaps = 4/140 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISD A + + + + + L E+ + +VG
Sbjct: 2 RVMGLDVGSKTVGVAISDALGWTAQGIETIAINEAAKQFGYDRVKELAQEYEVSKIVVGL 61
Query: 83 PFNRQQN-AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N A K + + L +K + W+E T++ E L D+ + K
Sbjct: 62 PKNMNNTLGPRAESSKKYAEVL---EKRVQLPVVLWDERMTTQAAERTLLEADVSRGKRK 118
Query: 142 TILDKFAAVGILQEYLDNAN 161
++DK AAV ILQ YLD N
Sbjct: 119 KVIDKLAAVMILQSYLDTNN 138
>gi|345857913|ref|ZP_08810331.1| hypothetical protein DOT_1700 [Desulfosporosinus sp. OT]
gi|344329000|gb|EGW40360.1| hypothetical protein DOT_1700 [Desulfosporosinus sp. OT]
Length = 140
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 6/141 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLD G K +G+++SD A + + R K ID + R LI E+ + ++GY
Sbjct: 2 RIMGLDFGSKTIGVAVSDAFFWTAQGVKTIRRSKKEID----ELRELIREYEVNEIVIGY 57
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N + +L ++ + W+E ++ + L D+ + K
Sbjct: 58 PKNMNGTLGPRCEATSEFAELLRSEF--GLLVELWDERLSTVAAQRTLLEADVSRSKRKL 115
Query: 143 ILDKFAAVGILQEYLDNANRK 163
++DK AAV ILQ YLD K
Sbjct: 116 VIDKMAAVFILQGYLDRRQSK 136
>gi|323142335|ref|ZP_08077167.1| RNAse H domain protein, YqgF family [Phascolarctobacterium
succinatutens YIT 12067]
gi|322413219|gb|EFY04106.1| RNAse H domain protein, YqgF family [Phascolarctobacterium
succinatutens YIT 12067]
Length = 140
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 69/146 (47%), Gaps = 11/146 (7%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R + LDVG + +G+++SD IA+ + + R D LI+E ++ +VGY
Sbjct: 2 RKMSLDVGTRTIGIAVSDLLGMIANGVETIHRTTEERDY--ARIAELIAEHEVDTLVVGY 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDM----KYAYWNEGFTSKGVELLLNPLDLHPV 138
P N + Q + +KL M + W+E ++ E +L DL
Sbjct: 60 PKNMNGTIGERAQACE-----AMAEKLRTMFPKVQVVLWDERLSTVAAEKVLVDADLRRK 114
Query: 139 EYKTILDKFAAVGILQEYLDNANRKV 164
+ K ++D AAV ILQ YLD+ + K+
Sbjct: 115 KRKKVIDMMAAVVILQNYLDSKSFKI 140
>gi|41407176|ref|NP_960012.1| Holliday junction resolvase-like protein [Mycobacterium avium
subsp. paratuberculosis K-10]
gi|254775876|ref|ZP_05217392.1| Holliday junction resolvase-like protein [Mycobacterium avium
subsp. avium ATCC 25291]
gi|417746955|ref|ZP_12395436.1| RNAse H protein YqgF [Mycobacterium avium subsp. paratuberculosis
S397]
gi|440776682|ref|ZP_20955517.1| Holliday junction resolvase-like protein [Mycobacterium avium
subsp. paratuberculosis S5]
gi|62900995|sp|Q741L2.1|RUVX_MYCPA RecName: Full=Putative Holliday junction resolvase
gi|41395527|gb|AAS03395.1| hypothetical protein MAP_1078 [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|336461494|gb|EGO40362.1| RNAse H protein YqgF [Mycobacterium avium subsp. paratuberculosis
S397]
gi|436723142|gb|ELP47003.1| Holliday junction resolvase-like protein [Mycobacterium avium
subsp. paratuberculosis S5]
Length = 167
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 70/143 (48%), Gaps = 11/143 (7%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV 80
RGR LG+DVG +G++ SDP +A+P+ + R ++ L +L++E +V
Sbjct: 21 RGRRLGIDVGSVRIGVACSDPDAVLATPVETVRRDRSGKHL--RRLAALVTELGAVEVVV 78
Query: 81 GYP---FNRQQNAA-DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH 136
G P +R +A DA+ D L+ +++ +E T+ + L +
Sbjct: 79 GLPRTLADRTGTSALDAID---LADQLA--RRIAPTPVRLADERLTTVAAQRSLRAAGVR 133
Query: 137 PVEYKTILDKFAAVGILQEYLDN 159
E + ++D+ AAV ILQ +LD
Sbjct: 134 AKEQRAVIDQAAAVAILQSWLDQ 156
>gi|251783469|ref|YP_002997774.1| Holliday junction resolvase-like protein [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
gi|386317928|ref|YP_006014092.1| Holliday junction resolvase-like protein [Streptococcus
dysgalactiae subsp. equisimilis ATCC 12394]
gi|408402560|ref|YP_006860524.1| Holliday junction resolvase-like protein [Streptococcus
dysgalactiae subsp. equisimilis RE378]
gi|410495875|ref|YP_006905721.1| holliday junction resolvase [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
gi|417753347|ref|ZP_12401478.1| RNAse H domain protein, YqgF family [Streptococcus dysgalactiae
subsp. equisimilis SK1249]
gi|417927971|ref|ZP_12571359.1| RNAse H domain protein, YqgF family [Streptococcus dysgalactiae
subsp. equisimilis SK1250]
gi|422760012|ref|ZP_16813774.1| Holliday junction resolvase-like protein [Streptococcus
dysgalactiae subsp. dysgalactiae ATCC 27957]
gi|242392101|dbj|BAH82560.1| Holliday junction resolvase-like protein [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
gi|322412847|gb|EFY03755.1| Holliday junction resolvase-like protein [Streptococcus
dysgalactiae subsp. dysgalactiae ATCC 27957]
gi|323128215|gb|ADX25512.1| Holliday junction resolvase-like protein [Streptococcus
dysgalactiae subsp. equisimilis ATCC 12394]
gi|333770398|gb|EGL47437.1| RNAse H domain protein, YqgF family [Streptococcus dysgalactiae
subsp. equisimilis SK1249]
gi|340765845|gb|EGR88371.1| RNAse H domain protein, YqgF family [Streptococcus dysgalactiae
subsp. equisimilis SK1250]
gi|407968789|dbj|BAM62027.1| Holliday junction resolvase-like protein [Streptococcus
dysgalactiae subsp. equisimilis RE378]
gi|410441035|emb|CCI63663.1| K07447 putative holliday junction resolvase [Streptococcus
dysgalactiae subsp. equisimilis AC-2713]
Length = 139
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 70/138 (50%), Gaps = 5/138 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ + + E L+ ++ ++ F+VG
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKEEFGFERLGELVKQYQVDQFVVGL 61
Query: 83 PFNRQQNAADAVQV-KLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEY 140
P N + V+ K + + + + L + Y +E T+ E +L+ D+ +
Sbjct: 62 PKNMNNTSGPRVEASKAYGEKIES---LFSLPVHYQDERLTTVEAERMLIEQADVSRGKR 118
Query: 141 KTILDKFAAVGILQEYLD 158
K ++DK AA ILQ YLD
Sbjct: 119 KKVIDKLAAQLILQNYLD 136
>gi|334138854|ref|ZP_08512260.1| RNAse H domain protein, YqgF family [Paenibacillus sp. HGF7]
gi|333603597|gb|EGL15005.1| RNAse H domain protein, YqgF family [Paenibacillus sp. HGF7]
Length = 136
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 68/137 (49%), Gaps = 4/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLD GDK +G+++SD A + V+ R DL + R LI E+ + +VG
Sbjct: 2 RTMGLDYGDKTIGVAVSDLLGLTAQGIEVIRRASPQHDL--DHLRRLIGEYEVTEIVVGL 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N N + + +L + + + ++ W+E T+ L D+ + K
Sbjct: 60 PKN--MNGSIGPRGELCQEFAAQLTETFNLPVRMWDERLTTVSATRTLLEADVSRKKRKQ 117
Query: 143 ILDKFAAVGILQEYLDN 159
++DK AAV ILQ Y+D+
Sbjct: 118 VVDKIAAVLILQGYMDS 134
>gi|23099462|ref|NP_692928.1| hypothetical protein OB2007 [Oceanobacillus iheyensis HTE831]
gi|32130032|sp|Q8EPT1.1|RUVX_OCEIH RecName: Full=Putative Holliday junction resolvase
gi|22777691|dbj|BAC13963.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 137
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 2/137 (1%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
+ +GLDVG K +G+++SD A + + +N + E+ +ISE + I+G
Sbjct: 2 KIIGLDVGSKTIGVAVSDALGWTAQGVKTIRWDENDLSSADEELEKIISEHEIGKAIIGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N + + + +K+ + W+E T+ E +L D+ + K
Sbjct: 62 PKNMNGTIGERGEASQRY--ANHIEKVFQIPVDLWDERLTTMAAERVLLEADMSRSKRKK 119
Query: 143 ILDKFAAVGILQEYLDN 159
++DK AAV ILQ YLD
Sbjct: 120 VIDKMAAVMILQGYLDQ 136
>gi|293364362|ref|ZP_06611088.1| crossover junction endodeoxyribonuclease [Streptococcus oralis ATCC
35037]
gi|291317208|gb|EFE57635.1| crossover junction endodeoxyribonuclease [Streptococcus oralis ATCC
35037]
Length = 139
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ ++ + + L+ + +E F+VG
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGQFGFDRIKELVDIYKVERFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTSKGVE-LLLNPLDLHPV 138
P N + V+ + KLE+ + Y +E T+ E +L+ D+
Sbjct: 62 PKNMNNTSGPRVEAS-----QAYGAKLEELFGLPVDYQDERLTTVAAERMLIEQADISRN 116
Query: 139 EYKTILDKFAAVGILQEYLD 158
+ K ++DK AA ILQ YLD
Sbjct: 117 KRKKVIDKLAAQLILQNYLD 136
>gi|401679383|ref|ZP_10811314.1| RNAse H domain protein, YqgF family [Veillonella sp. ACP1]
gi|400219604|gb|EJO50468.1| RNAse H domain protein, YqgF family [Veillonella sp. ACP1]
Length = 137
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 12/138 (8%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDF---RSLISEFNLEGFIVG 81
+ LDVG + +G++ SD A + + R + DF R LISE+ + +VG
Sbjct: 1 MALDVGSRTIGIACSDALLMTAQGIETIRRTS-----LENDFNRLRELISEYEVHELVVG 55
Query: 82 YPFNRQQNAAD-AVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
P N + A + + F++ + A + D+ +W+E ++ E L D+ +
Sbjct: 56 MPKNMNGTKGERAEKTEEFVEKMKA---VIDLPVTFWDERLSTVMAERQLIAADVSRKKR 112
Query: 141 KTILDKFAAVGILQEYLD 158
K ++DK AAV ILQ YLD
Sbjct: 113 KGVIDKMAAVVILQGYLD 130
>gi|169831078|ref|YP_001717060.1| Holliday junction resolvase YqgF [Candidatus Desulforudis
audaxviator MP104C]
gi|226725511|sp|B1I373.1|RUVX_DESAP RecName: Full=Putative Holliday junction resolvase
gi|169637922|gb|ACA59428.1| Holliday junction resolvase YqgF [Candidatus Desulforudis
audaxviator MP104C]
Length = 141
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 6/138 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLD+GD+ +G++++D A PL VL R DL +I ++ +E + G
Sbjct: 2 RLMGLDIGDRRIGVALTDENGVAAYPLEVLERTSPEKDL--RRITEIIDQYGVERVVAGL 59
Query: 83 PFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P Q +V F+D L + W+E T+ VE LL DL +
Sbjct: 60 PKTLSGQIGPQGDKVLSFLDKLRVRST---VPVITWDERLTTAEVEKLLVSADLGRRRRR 116
Query: 142 TILDKFAAVGILQEYLDN 159
++DK AA IL YL++
Sbjct: 117 KVVDKLAATLILNSYLNS 134
>gi|116628625|ref|YP_821244.1| Holliday junction resolvase-like protein [Streptococcus
thermophilus LMD-9]
gi|386087565|ref|YP_006003439.1| Holliday junction resolvase YqgF [Streptococcus thermophilus ND03]
gi|387910661|ref|YP_006340967.1| Holliday junction resolvase-like protein [Streptococcus
thermophilus MN-ZLW-002]
gi|122266781|sp|Q03IC4.1|RUVX_STRTD RecName: Full=Putative Holliday junction resolvase
gi|116101902|gb|ABJ67048.1| RNase H-like ribonuclease [Streptococcus thermophilus LMD-9]
gi|312279278|gb|ADQ63935.1| Holliday junction resolvase YqgF [Streptococcus thermophilus ND03]
gi|387575596|gb|AFJ84302.1| Holliday junction resolvase-like protein [Streptococcus
thermophilus MN-ZLW-002]
Length = 139
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 5/138 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A + ++ + + + L+ E+ ++ F+VG
Sbjct: 2 RVMGLDVGSKTVGVAISDPLGFTAQGVEIIKINEEAKEFGFDRLGELVKEYQVDKFVVGL 61
Query: 83 PFNRQQNAADAVQV-KLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEY 140
P N V+ K + D + K++ ++ Y +E T+ E +L+ D+ +
Sbjct: 62 PKNMNNTEGPRVEASKAYGDKI---KEIFNLPVDYQDERLTTVQAERMLVEQADVSRDKR 118
Query: 141 KTILDKFAAVGILQEYLD 158
K ++DK AA ILQ YLD
Sbjct: 119 KKVIDKLAAQLILQNYLD 136
>gi|325262832|ref|ZP_08129568.1| putative Holliday junction resolvase [Clostridium sp. D5]
gi|324031926|gb|EGB93205.1| putative Holliday junction resolvase [Clostridium sp. D5]
Length = 148
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 3/138 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKK-NTIDLMAEDFRSLISEFNLEGFIVG 81
R +GLD G K VG++ISD A + + RK+ N + L+SE+ +E ++G
Sbjct: 2 RIMGLDYGTKTVGVAISDALGFTAQGIETIQRKEENKLRRTLARIEELVSEYEVEKIVLG 61
Query: 82 YPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
+P + + + + L D+ + ++ W+E T+ E L ++ K
Sbjct: 62 FPKHMNNDIGERAEKSLEFRDMLVRRT--GLEVIMWDERLTTVEAERTLIESNVRRENRK 119
Query: 142 TILDKFAAVGILQEYLDN 159
+DK AA+ ILQ YLD+
Sbjct: 120 KYIDKIAAIFILQGYLDS 137
>gi|401564459|ref|ZP_10805352.1| RNAse H domain protein, YqgF family [Selenomonas sp. FOBRC6]
gi|400188861|gb|EJO22997.1| RNAse H domain protein, YqgF family [Selenomonas sp. FOBRC6]
Length = 137
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 76/144 (52%), Gaps = 8/144 (5%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+ LD+GD +G+++SD A + + R + + DL + +L+ E+++ F+ G P
Sbjct: 1 MSLDIGDATIGVAVSDLLGLTAQGVETIRRTELSADL--DRLNALVQEYDVAAFVAGLPK 58
Query: 85 NRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143
+ + + + V+ F+ + A K+ ++ YW+E ++ L D+ + + +
Sbjct: 59 HMNGDEGERCEIVRAFMAE--AAKRFPTLEIHYWDERLSTVAASRALIEGDVSRKKRRKV 116
Query: 144 LDKFAAVGILQEYLDNANRKVNLK 167
+DK AAV ILQ +LD R+ +LK
Sbjct: 117 IDKMAAVYILQGFLD---RQQHLK 137
>gi|319940102|ref|ZP_08014456.1| crossover junction endodeoxyribonuclease [Streptococcus anginosus
1_2_62CV]
gi|319810816|gb|EFW07143.1| crossover junction endodeoxyribonuclease [Streptococcus anginosus
1_2_62CV]
Length = 139
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 67/137 (48%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG+++SDP A L ++ + + + L+ E+ + F+VG
Sbjct: 2 RIMGLDVGSKTVGVAVSDPLGFTAQGLEIIPIDEEKGEFGFDRLSELVKEYKVNKFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + V+ + ++L + Y +E T+ E +L+ D+ + K
Sbjct: 62 PKNMNNTSGPRVEASQAYG--AKIEQLFHLPVEYQDERLTTVAAERMLIEQADVSRKKRK 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 120 KVIDKLAAQLILQNYLD 136
>gi|114765456|ref|ZP_01444566.1| hypothetical protein 1100011001321_R2601_10219 [Pelagibaca
bermudensis HTCC2601]
gi|114542166|gb|EAU45197.1| hypothetical protein R2601_10219 [Roseovarius sp. HTCC2601]
Length = 158
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 72/145 (49%), Gaps = 9/145 (6%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+G K +G+++SD +A+PL + RKK T+D AE ++ + + G ++G P N
Sbjct: 21 GLDLGTKTIGVAVSDRLLTVATPLETVKRKKFTLD--AERLLEILVKREIGGVVLGLPRN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
+ Q + F + S +L D +W+E ++ E L D + ++
Sbjct: 79 MDGSEGPRCQSTRAFARNFS---RLWDGPVTFWDERLSTVAAERALLEADTSRAKRAELI 135
Query: 145 DKFAAVGILQEYLDNANRKVNLKAN 169
D AA ILQ LD R +L+AN
Sbjct: 136 DHVAASYILQGALD---RLRHLRAN 157
>gi|387760379|ref|YP_006067356.1| hypothetical protein Ssal_00067 [Streptococcus salivarius 57.I]
gi|339291146|gb|AEJ52493.1| conserved hypothetical protein [Streptococcus salivarius 57.I]
Length = 136
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 72/141 (51%), Gaps = 15/141 (10%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDF-----RSLISEFNLEGFI 79
+GLDVG K VG++ISDP A + ++ ID AE+F L+ E+ +E F+
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGVEII-----KIDEEAEEFGFDRLGELVKEYKVEKFV 55
Query: 80 VGYPFNRQQNAADAVQV-KLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHP 137
VG P N V+ K + D + K++ + Y +E T+ E +L+ D+
Sbjct: 56 VGLPKNMNNTEGPRVEASKAYGDKI---KEIFGIPVDYQDERLTTVQAERMLVEQADISR 112
Query: 138 VEYKTILDKFAAVGILQEYLD 158
+ K ++DK AA ILQ YLD
Sbjct: 113 GKRKKVIDKLAAQLILQNYLD 133
>gi|118597223|sp|Q1JEI0.1|RUVX_STRPD RecName: Full=Putative Holliday junction resolvase
gi|94544881|gb|ABF34929.1| Endonuclease involved in recombination [Streptococcus pyogenes
MGAS10270]
Length = 139
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ + + L+ ++ +E F++G
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQYQVEQFVIGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N N ++ +V I + + L + Y +E T+ E +L+ D+ + K
Sbjct: 62 PKN--MNNTNSPRVDASITYGNHIEHLFGLPVHYQDERLTTVEAERMLIEQADISRGKRK 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YL+
Sbjct: 120 KVIDKLAAQLILQNYLN 136
>gi|377556918|ref|ZP_09786592.1| Putative Holliday junction resolvase [Lactobacillus gastricus PS3]
gi|376166994|gb|EHS85861.1| Putative Holliday junction resolvase [Lactobacillus gastricus PS3]
Length = 146
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 2/141 (1%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K VG++ SDP A + ++ + E L+ E + GF++G
Sbjct: 2 RLLGLDVGSKTVGVAQSDPLGWTAQAVEIIPINETEEVFGLERIAELVKERQVAGFVIGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTS-KGVELLLNPLDLHPVEYK 141
P N V+ +L K ++ Y +E T+ + +L+ D+ + K
Sbjct: 62 PKNMNNTEGPRVEASRHYGEL-LQAKFPNLPVDYQDERLTTVQASRMLIEEADVSRRKQK 120
Query: 142 TILDKFAAVGILQEYLDNANR 162
++D+ AA ILQ YLD +
Sbjct: 121 QVIDELAATLILQNYLDRHGK 141
>gi|22538225|ref|NP_689076.1| Holliday junction resolvase-like protein [Streptococcus agalactiae
2603V/R]
gi|76788469|ref|YP_330619.1| Holliday junction resolvase-like protein [Streptococcus agalactiae
A909]
gi|76799707|ref|ZP_00781806.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
18RS21]
gi|77406617|ref|ZP_00783663.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
H36B]
gi|77410840|ref|ZP_00787197.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
CJB111]
gi|77412943|ref|ZP_00789146.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
515]
gi|339300543|ref|ZP_08649687.1| crossover junction endodeoxyribonuclease [Streptococcus agalactiae
ATCC 13813]
gi|406710401|ref|YP_006765127.1| Holliday junction resolvase-like protein [Streptococcus agalactiae
GD201008-001]
gi|410595351|ref|YP_006952078.1| Holliday junction resolvase [Streptococcus agalactiae SA20-06]
gi|417006473|ref|ZP_11945043.1| Holliday junction resolvase-like protein [Streptococcus agalactiae
FSL S3-026]
gi|22535137|gb|AAN00949.1|AE014286_12 conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
2603V/R]
gi|76563526|gb|ABA46110.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
A909]
gi|76584940|gb|EAO61599.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
18RS21]
gi|77160955|gb|EAO72063.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
515]
gi|77163058|gb|EAO74012.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
CJB111]
gi|77174776|gb|EAO77599.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
H36B]
gi|319745985|gb|EFV98267.1| crossover junction endodeoxyribonuclease [Streptococcus agalactiae
ATCC 13813]
gi|341576654|gb|EGS27065.1| Holliday junction resolvase-like protein [Streptococcus agalactiae
FSL S3-026]
gi|406651286|gb|AFS46687.1| Holliday junction resolvase-like protein [Streptococcus agalactiae
GD201008-001]
gi|410518990|gb|AFV73134.1| Putative Holliday junction resolvase [Streptococcus agalactiae
SA20-06]
Length = 136
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 3/135 (2%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLDVG K VG++ISDP A L ++ + + + + L+ E+ ++ F+VG P
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEESGNFGFDRLAELVKEYKVDKFVVGLPK 60
Query: 85 NRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYKTI 143
N + V+ D +L ++ Y +E T+ E +L+ D+ + K +
Sbjct: 61 NMNNTSGPRVEASQAYGD--KITELFNLPVEYQDERLTTVQAERMLVEQADISRGKRKKV 118
Query: 144 LDKFAAVGILQEYLD 158
+DK AA ILQ YLD
Sbjct: 119 IDKLAAQLILQNYLD 133
>gi|416141276|ref|ZP_11599372.1| Putative Holliday junction resolvase [Enterococcus faecium E4452]
gi|364090229|gb|EHM32842.1| Putative Holliday junction resolvase [Enterococcus faecium E4452]
Length = 140
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 73/141 (51%), Gaps = 3/141 (2%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLDVG K VG+++SDP A + ++ + + + + L++++ ++ F+VG P
Sbjct: 1 MGLDVGSKTVGVAVSDPFGWTAQGVEIIRINEAEEEFGFDRLKELVAQYEVDRFVVGLPK 60
Query: 85 NRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYKTI 143
N + + + + K+L + Y +E T+ E +L+ + + K +
Sbjct: 61 NMNNSIGPRAEASMSYGE--KIKELFSLPVDYQDERLTTVQAERMLVEQANTSRAKRKKV 118
Query: 144 LDKFAAVGILQEYLDNANRKV 164
+DK AAV ILQ YLD + +++
Sbjct: 119 IDKLAAVMILQNYLDGSGKQL 139
>gi|227529702|ref|ZP_03959751.1| crossover junction endodeoxyribonuclease [Lactobacillus vaginalis
ATCC 49540]
gi|227350368|gb|EEJ40659.1| crossover junction endodeoxyribonuclease [Lactobacillus vaginalis
ATCC 49540]
Length = 147
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 10/149 (6%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNT----IDLMAEDFRSLISEFNLEGF 78
R LGLDVG K VG+++SDP A + ++ ++ ID +AE ++ + + GF
Sbjct: 2 RLLGLDVGSKTVGIAVSDPLGWTAQAVEIIPINEDEEIFGIDRVAE----IVKQRQVAGF 57
Query: 79 IVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTS-KGVELLLNPLDLHP 137
+VG P N V+ +L K+ + + +E T+ + +L+ D+
Sbjct: 58 VVGLPKNMNNTEGPRVEASHHYGEL-LKKRFPSIPVDFQDERLTTVEAHRMLVEEADISR 116
Query: 138 VEYKTILDKFAAVGILQEYLDNANRKVNL 166
+ K ++D+ AA ILQ YLD + V +
Sbjct: 117 AKQKKVIDEVAATFILQSYLDRHGKLVQV 145
>gi|90423758|ref|YP_532128.1| Holliday junction resolvase-like protein [Rhodopseudomonas
palustris BisB18]
gi|146325601|sp|Q215X7.1|RUVX_RHOPB RecName: Full=Putative Holliday junction resolvase
gi|90105772|gb|ABD87809.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris
BisB18]
Length = 163
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 68/139 (48%), Gaps = 6/139 (4%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV 80
RG +GLD+G K +G+++SDP ++A+ + ++ A L + N GF++
Sbjct: 18 RGALIGLDLGTKTIGVAVSDPDRRLATGVETII--HTAFKANAARLLLLAGQRNAVGFVL 75
Query: 81 GYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
G P N + Q + F + + +L D+ W+E ++ VE L D+ +
Sbjct: 76 GLPINMDGSEGPRAQSTRAFARNFA---RLTDLPIGLWDERLSTSAVERELIANDVSRAK 132
Query: 140 YKTILDKFAAVGILQEYLD 158
++D+ AA+ ILQ LD
Sbjct: 133 RAKVIDEHAAIFILQGALD 151
>gi|392960844|ref|ZP_10326309.1| Holliday junction resolvase [Pelosinus fermentans DSM 17108]
gi|421054398|ref|ZP_15517366.1| Holliday junction resolvase YqgF [Pelosinus fermentans B4]
gi|421057100|ref|ZP_15519990.1| Holliday junction resolvase [Pelosinus fermentans B3]
gi|421067723|ref|ZP_15529167.1| Holliday junction resolvase [Pelosinus fermentans A12]
gi|421071259|ref|ZP_15532379.1| Holliday junction resolvase [Pelosinus fermentans A11]
gi|392440756|gb|EIW18416.1| Holliday junction resolvase YqgF [Pelosinus fermentans B4]
gi|392447175|gb|EIW24429.1| Holliday junction resolvase [Pelosinus fermentans A11]
gi|392448078|gb|EIW25282.1| Holliday junction resolvase [Pelosinus fermentans A12]
gi|392454741|gb|EIW31563.1| Holliday junction resolvase [Pelosinus fermentans DSM 17108]
gi|392463655|gb|EIW39554.1| Holliday junction resolvase [Pelosinus fermentans B3]
Length = 138
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 5/138 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R L LDVGDK +G++ SD A + V+ R DL +I+E+ + ++G
Sbjct: 2 RILALDVGDKTIGVAASDLLLLTAQGIEVIRRTSLERDL--NRLNEIITEYEVGTILIGL 59
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + + ++ F + ++ T MK W+E ++ G + L D+ + K
Sbjct: 60 PKNMNGSIGPRGELMQTFANRVAET--FPTMKVVLWDERLSTVGAQKALIAADVSRAKRK 117
Query: 142 TILDKFAAVGILQEYLDN 159
++DK AAV ILQ YLD+
Sbjct: 118 KVIDKMAAVFILQGYLDS 135
>gi|339504452|ref|YP_004691872.1| hypothetical protein RLO149_c029530 [Roseobacter litoralis Och 149]
gi|338758445|gb|AEI94909.1| hypothetical protein RLO149_c029530 [Roseobacter litoralis Och 149]
Length = 163
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 4/137 (2%)
Query: 24 FLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYP 83
+GLD+G + +G+++SD +A+PL + R+K T+D A + SE L G ++G P
Sbjct: 19 LMGLDLGTQTIGVAVSDTFLSVATPLETIKRRKFTLD--AARLVEIASERRLGGLVLGLP 76
Query: 84 FNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
N + Q + F +L T D+ +W+E ++ E L D
Sbjct: 77 RNMDGSEGPRCQSTRAFARNLEKTIG-SDLPITFWDERLSTVAAERALLEADTSRKRRAE 135
Query: 143 ILDKFAAVGILQEYLDN 159
++D AA ILQ LD
Sbjct: 136 VIDHVAAGYILQGALDR 152
>gi|126736029|ref|ZP_01751773.1| hypothetical protein RCCS2_02303 [Roseobacter sp. CCS2]
gi|126714586|gb|EBA11453.1| hypothetical protein RCCS2_02303 [Roseobacter sp. CCS2]
Length = 158
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 9/153 (5%)
Query: 18 VSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEG 77
+ RG GLD+G +G+++SD +A+PL + RKK +D A L + + G
Sbjct: 13 IPDRGALAGLDLGTVTIGVAVSDVLRSVATPLETIKRKKFGVD--AAKLLELTTHRLVTG 70
Query: 78 FIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH 136
++G P N + Q + F +L +KL + +W+E ++ E L D
Sbjct: 71 LVLGLPRNMDGSEGPRCQATRAFARNL---EKLTPLPITFWDERLSTVAAERALLEADTS 127
Query: 137 PVEYKTILDKFAAVGILQEYLDNANRKVNLKAN 169
++D AA ILQ LD R +LKA
Sbjct: 128 RKRRAEVIDHVAAGYILQGMLD---RMAHLKAT 157
>gi|340777176|ref|ZP_08697119.1| putative Holliday junction resolvase [Acetobacter aceti NBRC 14818]
Length = 182
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 67/146 (45%), Gaps = 5/146 (3%)
Query: 14 LKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEF 73
L K+S R LG+D G K GL++SD +ASP VL R+K + +MA + SE
Sbjct: 26 LSEKLSTGQRLLGIDPGAKTAGLALSDVMLMVASPYGVLKREK--LSVMARKIVEIASEQ 83
Query: 74 NLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGV-ELLLNP 132
++ +VG P + A Q D A + W+E F+S V ++
Sbjct: 84 DVGALVVGLPLSMDGGFGPAAQAAR--DWAQALSDQIGIAAVLWDERFSSSVVNRTIIGE 141
Query: 133 LDLHPVEYKTILDKFAAVGILQEYLD 158
DL I+DK AA +LQ LD
Sbjct: 142 ADLSRKRRGEIVDKMAAAYMLQGVLD 167
>gi|163792874|ref|ZP_02186850.1| Holliday junction resolvase YqgF [alpha proteobacterium BAL199]
gi|159181520|gb|EDP66032.1| Holliday junction resolvase YqgF [alpha proteobacterium BAL199]
Length = 168
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 6/115 (5%)
Query: 14 LKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEF 73
L R + R +GLD G K +G+++SD ++ASP++++ R+K + D A + +L+
Sbjct: 9 LHRLLGPGARLMGLDFGTKTIGIAVSDAALRVASPVTIIRRRKFSED--AAEILALVGSR 66
Query: 74 NLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKL-EDMKYAYWNEGFTSKGVE 127
N+ GF+VG P N Q DL+A L D+ + +E +++ VE
Sbjct: 67 NIGGFVVGLPLNMDGTEGPRCQS---TRDLTAELLLRHDLPTVFQDERMSTQAVE 118
>gi|434391867|ref|YP_007126814.1| Holliday junction resolvase [Gloeocapsa sp. PCC 7428]
gi|428263708|gb|AFZ29654.1| Holliday junction resolvase [Gloeocapsa sp. PCC 7428]
Length = 165
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 74/144 (51%), Gaps = 8/144 (5%)
Query: 18 VSKRGRF---LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFN 74
+S+R RF LGLD+G K +G++ D IAS L+ + RK +DL +SL+ E
Sbjct: 23 ISRR-RFISALGLDIGRKRIGVAGCDGTGLIASGLTTIERKSFDLDLA--QLKSLVQERR 79
Query: 75 LEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLD 134
++ +VG P++ + + Q + S + + Y +E TS E LL +
Sbjct: 80 VQVLVVGLPYS--MDGSLGKQAQEIQKLASRYAQALQLPLEYIDERLTSFQAEQLLQAQN 137
Query: 135 LHPVEYKTILDKFAAVGILQEYLD 158
+ P K ++D+ AA ILQ++LD
Sbjct: 138 ISPSRNKGLIDRKAAALILQQWLD 161
>gi|302385313|ref|YP_003821135.1| Holliday junction resolvase YqgF [Clostridium saccharolyticum WM1]
gi|302195941|gb|ADL03512.1| Holliday junction resolvase YqgF [Clostridium saccharolyticum WM1]
Length = 146
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 5/139 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKK-NTIDLMAEDFRSLISEFNLEGFIVG 81
R +GLD G K VG+++SD A + + R++ N + LI E+ +E I+G
Sbjct: 2 RIMGLDYGSKTVGVAVSDLLGITAQGVETITREEENKLRKTCARIEELIREYEIETIILG 61
Query: 82 YPFNRQQNAAD-AVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
YP N +A A + + F + L + + W+E T+ E +L +
Sbjct: 62 YPKNMNNSAGQRAEKTEQFKEMLI---RRTGLNVILWDERLTTVASERILQESGVRREHR 118
Query: 141 KTILDKFAAVGILQEYLDN 159
K ++D+ AA ILQ YLD+
Sbjct: 119 KAVIDQVAAGLILQGYLDS 137
>gi|89068321|ref|ZP_01155731.1| hypothetical protein OG2516_02629 [Oceanicola granulosus HTCC2516]
gi|89046238|gb|EAR52296.1| hypothetical protein OG2516_02629 [Oceanicola granulosus HTCC2516]
Length = 157
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 6/138 (4%)
Query: 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 81
G +GLD+G + +G+++SD +A+PL + RKK +D A ++ + G ++G
Sbjct: 17 GALVGLDLGTRTIGVAVSDGLRAVATPLQTIARKKFGVDAAA--LLAICEHRAITGIVLG 74
Query: 82 YPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
P N + Q + F +L ++L + A+W+E ++ E L D
Sbjct: 75 LPRNMDGSEGPRCQSTRGFARNL---ERLTPLPIAFWDERLSTVAAERALLEADTSRRRR 131
Query: 141 KTILDKFAAVGILQEYLD 158
++D AA ILQ LD
Sbjct: 132 GEVIDHVAAGVILQGMLD 149
>gi|422344007|ref|ZP_16424934.1| hypothetical protein HMPREF9432_00994 [Selenomonas noxia F0398]
gi|355377755|gb|EHG24964.1| hypothetical protein HMPREF9432_00994 [Selenomonas noxia F0398]
Length = 141
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 75/147 (51%), Gaps = 10/147 (6%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R++ LD+GD +G+++SD A + + R+ + DL LI E+ + + G
Sbjct: 3 RYMSLDIGDATIGVAVSDLLGLTAQGVETIRRRDLSDDL--NRLGVLIQEYEADALVAGL 60
Query: 83 P--FNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
P N Q+ A+ V+ F+ D A ++ M+ YW+E ++ L D+ +
Sbjct: 61 PKHMNGQEGERCAL-VRAFMAD--AAERFPMMEIHYWDERLSTVAASRTLLEGDVSRKKR 117
Query: 141 KTILDKFAAVGILQEYLDNANRKVNLK 167
+ ++DK AAV ILQ +LD R+ +LK
Sbjct: 118 RKVIDKMAAVYILQGFLD---RQQHLK 141
>gi|319898952|ref|YP_004159045.1| resolvase [Bartonella clarridgeiae 73]
gi|319402916|emb|CBI76467.1| putative resolvase [Bartonella clarridgeiae 73]
Length = 164
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 12/137 (8%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLE---GFIVGY 82
LD+G K +G++ISD ++P V+ RKK T+D + +L+ FN E ++G
Sbjct: 21 SLDLGTKTIGIAISDISLTFSNPRPVIHRKKFTLDAL-----TLVKVFNNENVGAIVIGL 75
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + VQ K F+ +++ K+ + +W+E ++ E L +D+ + K
Sbjct: 76 PINMDGSNGPRVQATKTFVSNMAMYTKI---PFVFWDERLSTTAAERYLLEIDMSRSKRK 132
Query: 142 TILDKFAAVGILQEYLD 158
+ +D AA ILQ LD
Sbjct: 133 SRIDSAAAAFILQGALD 149
>gi|30264456|ref|NP_846833.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
Ames]
gi|42783515|ref|NP_980762.1| Holliday junction resolvase-like protein [Bacillus cereus ATCC
10987]
gi|47529912|ref|YP_021261.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
'Ames Ancestor']
gi|49187278|ref|YP_030530.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
Sterne]
gi|49478623|ref|YP_038437.1| Holliday junction resolvase-like protein [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|52141120|ref|YP_085709.1| Holliday junction resolvase-like protein [Bacillus cereus E33L]
gi|65321754|ref|ZP_00394713.1| COG0816: Predicted endonuclease involved in recombination (possible
Holliday junction resolvase in Mycoplasmas and B.
subtilis) [Bacillus anthracis str. A2012]
gi|118479548|ref|YP_896699.1| Holliday junction resolvase-like protein [Bacillus thuringiensis
str. Al Hakam]
gi|165872754|ref|ZP_02217382.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
A0488]
gi|167638500|ref|ZP_02396776.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
A0193]
gi|177653215|ref|ZP_02935467.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
A0174]
gi|190566960|ref|ZP_03019876.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
Tsiankovskii-I]
gi|196034479|ref|ZP_03101888.1| conserved hypothetical protein TIGR00250 [Bacillus cereus W]
gi|196039375|ref|ZP_03106681.1| conserved hypothetical protein TIGR00250 [Bacillus cereus
NVH0597-99]
gi|196044968|ref|ZP_03112202.1| conserved hypothetical protein TIGR00250 [Bacillus cereus 03BB108]
gi|218905581|ref|YP_002453415.1| Holliday junction resolvase-like protein [Bacillus cereus AH820]
gi|225866368|ref|YP_002751746.1| conserved hypothetical protein TIGR00250 [Bacillus cereus 03BB102]
gi|227817165|ref|YP_002817174.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
CDC 684]
gi|228917020|ref|ZP_04080580.1| Holliday junction resolvase [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228929431|ref|ZP_04092452.1| Holliday junction resolvase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228935707|ref|ZP_04098520.1| Holliday junction resolvase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228948100|ref|ZP_04110384.1| Holliday junction resolvase [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229093457|ref|ZP_04224560.1| Holliday junction resolvase [Bacillus cereus Rock3-42]
gi|229123927|ref|ZP_04253119.1| Holliday junction resolvase [Bacillus cereus 95/8201]
gi|229158002|ref|ZP_04286073.1| Holliday junction resolvase [Bacillus cereus ATCC 4342]
gi|229186626|ref|ZP_04313787.1| Holliday junction resolvase [Bacillus cereus BGSC 6E1]
gi|229603692|ref|YP_002868674.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
A0248]
gi|254684142|ref|ZP_05148002.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
CNEVA-9066]
gi|254724687|ref|ZP_05186470.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
A1055]
gi|254736489|ref|ZP_05194195.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
Western North America USA6153]
gi|254741527|ref|ZP_05199214.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
Kruger B]
gi|254757706|ref|ZP_05209733.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
Australia 94]
gi|300119207|ref|ZP_07056904.1| Holliday junction resolvase-like protein [Bacillus cereus SJ1]
gi|301055895|ref|YP_003794106.1| holliday junction resolvase-like protein [Bacillus cereus biovar
anthracis str. CI]
gi|376268284|ref|YP_005120996.1| Putative Holliday junction resolvase [Bacillus cereus F837/76]
gi|384182206|ref|YP_005567968.1| Holliday junction resolvase-like protein [Bacillus thuringiensis
serovar finitimus YBT-020]
gi|386738276|ref|YP_006211457.1| Putative Holliday junction resolvase [Bacillus anthracis str.
H9401]
gi|402555482|ref|YP_006596753.1| Holliday junction resolvase-like protein [Bacillus cereus FRI-35]
gi|421638456|ref|ZP_16079052.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
BF1]
gi|423549874|ref|ZP_17526201.1| RNAse H-fold protein YqgF [Bacillus cereus ISP3191]
gi|423612588|ref|ZP_17588449.1| RNAse H-fold protein YqgF [Bacillus cereus VD107]
gi|33301603|sp|Q81LK2.1|RUVX_BACAN RecName: Full=Putative Holliday junction resolvase
gi|62900956|sp|Q634F8.1|RUVX_BACCZ RecName: Full=Putative Holliday junction resolvase
gi|62900978|sp|Q6HDD9.1|RUVX_BACHK RecName: Full=Putative Holliday junction resolvase
gi|62900993|sp|Q730E7.1|RUVX_BACC1 RecName: Full=Putative Holliday junction resolvase
gi|167012692|sp|A0RIZ9.1|RUVX_BACAH RecName: Full=Putative Holliday junction resolvase
gi|226725484|sp|B7JPX2.1|RUVX_BACC0 RecName: Full=Putative Holliday junction resolvase
gi|254767494|sp|C3P975.1|RUVX_BACAA RecName: Full=Putative Holliday junction resolvase
gi|254767495|sp|C3L5Z2.1|RUVX_BACAC RecName: Full=Putative Holliday junction resolvase
gi|254767496|sp|C1EST1.1|RUVX_BACC3 RecName: Full=Putative Holliday junction resolvase
gi|30259114|gb|AAP28319.1| RNAse H-fold protein YqgF [Bacillus anthracis str. Ames]
gi|42739444|gb|AAS43370.1| conserved hypothetical protein TIGR00250 [Bacillus cereus ATCC
10987]
gi|47505060|gb|AAT33736.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
'Ames Ancestor']
gi|49181205|gb|AAT56581.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
Sterne]
gi|49330179|gb|AAT60825.1| conserved hypothetical protein, possible Holliday junction
resolvase [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|51974589|gb|AAU16139.1| conserved hypothetical protein; possible Holliday junction
resolvase [Bacillus cereus E33L]
gi|118418773|gb|ABK87192.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
Hakam]
gi|164711530|gb|EDR17079.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
A0488]
gi|167513348|gb|EDR88718.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
A0193]
gi|172081497|gb|EDT66569.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
A0174]
gi|190561951|gb|EDV15920.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
Tsiankovskii-I]
gi|195993021|gb|EDX56980.1| conserved hypothetical protein TIGR00250 [Bacillus cereus W]
gi|196024456|gb|EDX63129.1| conserved hypothetical protein TIGR00250 [Bacillus cereus 03BB108]
gi|196030002|gb|EDX68603.1| conserved hypothetical protein TIGR00250 [Bacillus cereus
NVH0597-99]
gi|218535867|gb|ACK88265.1| conserved hypothetical protein TIGR00250 [Bacillus cereus AH820]
gi|225789273|gb|ACO29490.1| conserved hypothetical protein TIGR00250 [Bacillus cereus 03BB102]
gi|227007492|gb|ACP17235.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
CDC 684]
gi|228596885|gb|EEK54544.1| Holliday junction resolvase [Bacillus cereus BGSC 6E1]
gi|228625455|gb|EEK82211.1| Holliday junction resolvase [Bacillus cereus ATCC 4342]
gi|228659229|gb|EEL14877.1| Holliday junction resolvase [Bacillus cereus 95/8201]
gi|228689928|gb|EEL43732.1| Holliday junction resolvase [Bacillus cereus Rock3-42]
gi|228811458|gb|EEM57795.1| Holliday junction resolvase [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228823945|gb|EEM69764.1| Holliday junction resolvase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228830219|gb|EEM75835.1| Holliday junction resolvase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228842627|gb|EEM87715.1| Holliday junction resolvase [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|229268100|gb|ACQ49737.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
A0248]
gi|298723427|gb|EFI64172.1| Holliday junction resolvase-like protein [Bacillus cereus SJ1]
gi|300378064|gb|ADK06968.1| holliday junction resolvase-like protein [Bacillus cereus biovar
anthracis str. CI]
gi|324328290|gb|ADY23550.1| Holliday junction resolvase-like protein [Bacillus thuringiensis
serovar finitimus YBT-020]
gi|364514084|gb|AEW57483.1| Putative Holliday junction resolvase [Bacillus cereus F837/76]
gi|384388128|gb|AFH85789.1| Putative Holliday junction resolvase [Bacillus anthracis str.
H9401]
gi|401189490|gb|EJQ96540.1| RNAse H-fold protein YqgF [Bacillus cereus ISP3191]
gi|401246177|gb|EJR52529.1| RNAse H-fold protein YqgF [Bacillus cereus VD107]
gi|401796692|gb|AFQ10551.1| Holliday junction resolvase-like protein [Bacillus cereus FRI-35]
gi|403394882|gb|EJY92122.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
BF1]
Length = 137
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 8/140 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K VG++ISD A L + + + L+ +++++ +VG
Sbjct: 2 RILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGQFGFDRISELVKQYDVDKIVVGL 61
Query: 83 PFNRQQNA---ADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
P N +A Q F ++L ++L + W+E ++ E LL D+ +
Sbjct: 62 PKNMNGTIGPRGEACQ--QFAENL---RELLQLDVVMWDERLSTMAAERLLISADVSRKK 116
Query: 140 YKTILDKFAAVGILQEYLDN 159
K ++DK AAV ILQ +LD+
Sbjct: 117 RKQVIDKMAAVVILQGFLDS 136
>gi|342213877|ref|ZP_08706596.1| RNAse H domain protein, YqgF family [Veillonella sp. oral taxon 780
str. F0422]
gi|341597465|gb|EGS40024.1| RNAse H domain protein, YqgF family [Veillonella sp. oral taxon 780
str. F0422]
Length = 136
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 6/138 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R + LDVG + +G++ SD A + + R + D + LI E+ ++ +VG
Sbjct: 2 RIMALDVGSRTIGVACSDALYITAQGIETIRRTSHEKDF--QRIAELIREYEVDTIVVGM 59
Query: 83 PFNRQQNAAD-AVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N D A + + F++ + +++ +W+E ++ E L D+ + K
Sbjct: 60 PKNMNGTKGDRAEKTEAFVEKM---QEVISTPVVFWDERLSTVMAEKSLIAADVSRKKRK 116
Query: 142 TILDKFAAVGILQEYLDN 159
++DK AAV ILQ YLD+
Sbjct: 117 EVIDKMAAVVILQGYLDS 134
>gi|19746980|ref|NP_608116.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS8232]
gi|28896707|ref|NP_803057.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
SSI-1]
gi|50915141|ref|YP_061113.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS10394]
gi|71904442|ref|YP_281245.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS6180]
gi|94989437|ref|YP_597538.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS9429]
gi|94993326|ref|YP_601425.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS2096]
gi|94995284|ref|YP_603382.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS10750]
gi|139474553|ref|YP_001129269.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
str. Manfredo]
gi|306826480|ref|ZP_07459791.1| crossover junction endodeoxyribonuclease [Streptococcus pyogenes
ATCC 10782]
gi|417857668|ref|ZP_12502727.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
HKU QMH11M0907901]
gi|54039589|sp|P67495.1|RUVX_STRP8 RecName: Full=Putative Holliday junction resolvase
gi|62900945|sp|Q5X9I3.1|RUVX_STRP6 RecName: Full=Putative Holliday junction resolvase
gi|118597224|sp|Q1J498.1|RUVX_STRPF RecName: Full=Putative Holliday junction resolvase
gi|146325612|sp|Q1J9D0.1|RUVX_STRPB RecName: Full=Putative Holliday junction resolvase
gi|146325613|sp|Q1JJH9.1|RUVX_STRPC RecName: Full=Putative Holliday junction resolvase
gi|146325614|sp|Q48QX0.1|RUVX_STRPM RecName: Full=Putative Holliday junction resolvase
gi|167016512|sp|A2RGU5.1|RUVX_STRPG RecName: Full=Putative Holliday junction resolvase
gi|342179318|sp|P0DF52.1|RUVX_STRP3 RecName: Full=Putative Holliday junction resolvase
gi|342179319|sp|P0DF53.1|RUVX_STRPQ RecName: Full=Putative Holliday junction resolvase
gi|19749234|gb|AAL98615.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
gi|28811961|dbj|BAC64890.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
gi|50904215|gb|AAT87930.1| Endonuclease involved in recombination [Streptococcus pyogenes
MGAS10394]
gi|71803537|gb|AAX72890.1| hypothetical protein M28_Spy1780 [Streptococcus pyogenes MGAS6180]
gi|94542945|gb|ABF32994.1| endonuclease involved in recombination [Streptococcus pyogenes
MGAS9429]
gi|94546834|gb|ABF36881.1| Endonuclease involved in recombination [Streptococcus pyogenes
MGAS2096]
gi|94548792|gb|ABF38838.1| Endonuclease involved in recombination [Streptococcus pyogenes
MGAS10750]
gi|134272800|emb|CAM31077.1| putative Holliday junction resolvase [Streptococcus pyogenes str.
Manfredo]
gi|304431339|gb|EFM34337.1| crossover junction endodeoxyribonuclease [Streptococcus pyogenes
ATCC 10782]
gi|387934623|gb|EIK42736.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
HKU QMH11M0907901]
Length = 139
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ + + L+ ++ +E F++G
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQYQVEQFVIGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N N + +V I + + L + Y +E T+ E +L+ D+ + K
Sbjct: 62 PKN--MNNTNGPRVDASITYGNHIEHLFGLPVHYQDERLTTVEAERMLIEQADISRGKRK 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YL+
Sbjct: 120 KVIDKLAAQLILQNYLN 136
>gi|340399823|ref|YP_004728848.1| putative Holliday junction resolvase [Streptococcus salivarius
CCHSS3]
gi|387785051|ref|YP_006071134.1| putative Holliday junction resolvase [Streptococcus salivarius
JIM8777]
gi|338743816|emb|CCB94326.1| putative Holliday junction resolvase [Streptococcus salivarius
CCHSS3]
gi|338745933|emb|CCB96299.1| putative Holliday junction resolvase [Streptococcus salivarius
JIM8777]
Length = 136
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 72/141 (51%), Gaps = 15/141 (10%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDF-----RSLISEFNLEGFI 79
+GLDVG K VG++ISDP A + ++ ID AE+F L+ E+ +E F+
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGVEII-----KIDEEAEEFGFDRLGELVKEYKVEKFV 55
Query: 80 VGYPFNRQQNAADAVQV-KLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHP 137
VG P N V+ K + D + K++ + Y +E T+ E +L+ D+
Sbjct: 56 VGLPKNMNNTEGPRVEASKAYGDKI---KEIFGIPVDYQDERLTTVQAERMLVEQADVSR 112
Query: 138 VEYKTILDKFAAVGILQEYLD 158
+ K ++DK AA ILQ YLD
Sbjct: 113 GKRKKVIDKLAAQLILQNYLD 133
>gi|160915322|ref|ZP_02077535.1| hypothetical protein EUBDOL_01331 [Eubacterium dolichum DSM 3991]
gi|158433121|gb|EDP11410.1| RNAse H domain protein, YqgF family [Eubacterium dolichum DSM 3991]
Length = 137
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 71/141 (50%), Gaps = 7/141 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD+G + +G+S+SD IA P++ + ++ D ++ I E+ ++ ++G
Sbjct: 2 RVLGLDLGSRTLGVSVSDALGMIAQPVTTIRFEEEDYDSAFGQVQTYIKEYQIKTVVLGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDM--KYAYWNEGFTSKGVELLLNPLDLHPVEY 140
P + + + + + +LE + W+E T+ + +L D+ +
Sbjct: 62 PKHMNGDVGIRGDISIMFKE-----RLETLGVTVVLWDERLTTVAAQRILIAADVSRKKR 116
Query: 141 KTILDKFAAVGILQEYLDNAN 161
K ++D+ AAV ILQ YLD+ +
Sbjct: 117 KKVIDQMAAVQILQGYLDSQS 137
>gi|172058081|ref|YP_001814541.1| Holliday junction resolvase YqgF [Exiguobacterium sibiricum 255-15]
gi|171990602|gb|ACB61524.1| Holliday junction resolvase YqgF [Exiguobacterium sibiricum 255-15]
Length = 140
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 4/141 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K +G+++SD A + + + + + ++I E+ +E ++G+
Sbjct: 3 RAIGLDVGSKTIGVAVSDLMGWTAQGVETIKWTEPEYPVAFKRLEAIIKEYGVEIIVIGH 62
Query: 83 PFNRQQNAADAVQV-KLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + + + F ++ L + +E T+ E +L D+ + K
Sbjct: 63 PKNMNGSIGPRAEASEAFAREIETQTGLSTVLV---DERLTTMQAERMLIDADVSRKKRK 119
Query: 142 TILDKFAAVGILQEYLDNANR 162
++DK AAV ILQ YLD ANR
Sbjct: 120 QVIDKMAAVMILQSYLDRANR 140
>gi|423400770|ref|ZP_17377943.1| RNAse H-fold protein YqgF [Bacillus cereus BAG2X1-2]
gi|423452315|ref|ZP_17429168.1| RNAse H-fold protein YqgF [Bacillus cereus BAG5X1-1]
gi|423478528|ref|ZP_17455243.1| RNAse H-fold protein YqgF [Bacillus cereus BAG6X1-1]
gi|423521758|ref|ZP_17498231.1| RNAse H-fold protein YqgF [Bacillus cereus HuA4-10]
gi|401139953|gb|EJQ47510.1| RNAse H-fold protein YqgF [Bacillus cereus BAG5X1-1]
gi|401176420|gb|EJQ83615.1| RNAse H-fold protein YqgF [Bacillus cereus HuA4-10]
gi|401653760|gb|EJS71303.1| RNAse H-fold protein YqgF [Bacillus cereus BAG2X1-2]
gi|402427759|gb|EJV59862.1| RNAse H-fold protein YqgF [Bacillus cereus BAG6X1-1]
Length = 137
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 8/140 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K VG+++SD A L + + + L+ ++N++ +VG
Sbjct: 2 RILGLDVGTKTVGVAMSDEMGWTAQGLETIRINEERGYFGFDRISELVKQYNVDKIVVGL 61
Query: 83 PFNRQQNAA---DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
P N +A Q F ++L + L ++ W+E ++ E LL D+ +
Sbjct: 62 PKNMNGTIGPRGEACQ--QFAENL---RNLLQLEVVMWDERLSTMAAERLLISADVSRKK 116
Query: 140 YKTILDKFAAVGILQEYLDN 159
K ++DK AAV ILQ +LD+
Sbjct: 117 RKQVIDKMAAVVILQGFLDS 136
>gi|405761610|ref|YP_006702206.1| regulatory protein Spx [Streptococcus pneumoniae SPNA45]
gi|404278500|emb|CCM09120.1| regulatory protein Spx [Streptococcus pneumoniae SPNA45]
Length = 228
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 9/140 (6%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ + + + L+ + +E F+VG
Sbjct: 91 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGKFGFDRVKELVDTYKVERFVVGL 150
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTSKGVE-LLLNPLDLHPV 138
P N + V+ + KLE+ + Y +E T+ E +L+ D+
Sbjct: 151 PKNMNNTSGPRVEAS-----QAYGAKLEEFFGLPVDYQDERLTTVAAERMLIEQADISRN 205
Query: 139 EYKTILDKFAAVGILQEYLD 158
+ K ++DK AA ILQ YLD
Sbjct: 206 KRKKVIDKLAAQLILQNYLD 225
>gi|326382144|ref|ZP_08203836.1| Holliday junction resolvase-like protein [Gordonia neofelifaecis
NRRL B-59395]
gi|326198874|gb|EGD56056.1| Holliday junction resolvase-like protein [Gordonia neofelifaecis
NRRL B-59395]
Length = 142
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 71/141 (50%), Gaps = 3/141 (2%)
Query: 18 VSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEG 77
+ RGR + +DVG VG+++ DP +A+P+ + R K+ D+ LI+E++ G
Sbjct: 2 IEPRGRRIAIDVGSVRVGVAVCDPDGILATPVETVRRSKDGADVA--RIVDLITEYDAVG 59
Query: 78 FIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHP 137
++G P + AV+ + A++ E + +++E T+ L +
Sbjct: 60 VVIGLPRTLRGEEGPAVRAARYFGRQLASEA-EGVSIEFYDERLTTVTATTALRASGVKA 118
Query: 138 VEYKTILDKFAAVGILQEYLD 158
+ + ++D+ AAV ILQ +LD
Sbjct: 119 KDARAVIDQAAAVAILQGWLD 139
>gi|322392530|ref|ZP_08065990.1| crossover junction endodeoxyribonuclease [Streptococcus peroris
ATCC 700780]
gi|321144522|gb|EFX39923.1| crossover junction endodeoxyribonuclease [Streptococcus peroris
ATCC 700780]
Length = 136
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 9/138 (6%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLDVG K VG++ISDP A L ++ ++ + + L+ + +E F+VG P
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGQFGFDRLKELVESYKVEHFVVGLPK 60
Query: 85 NRQQNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTSKGVE-LLLNPLDLHPVEY 140
N + V+ + KLE+ + Y +E T+ E +L+ D+ +
Sbjct: 61 NMNNTSGPRVEAS-----QAYGAKLEELFGLPVEYQDERLTTVAAERMLIEQADVSRNKR 115
Query: 141 KTILDKFAAVGILQEYLD 158
K ++DK AA ILQ YLD
Sbjct: 116 KKVIDKLAAQLILQNYLD 133
>gi|32130063|sp|Q9CJ63.2|RUVX_LACLA RecName: Full=Putative Holliday junction resolvase
Length = 143
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 65/136 (47%), Gaps = 2/136 (1%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K VG+S+SD A P+ + +L E LI E+ E ++G
Sbjct: 4 RILGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFERLGVLIKEYKPEKVVLGL 63
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P + N + ++ + D + ++ AY +E T+ E +L + E K
Sbjct: 64 P--KHMNGDEGIRAEASRDYGTKLANEFGLEVAYQDERLTTAQAEKVLIDGGVRRKERKK 121
Query: 143 ILDKFAAVGILQEYLD 158
+DK AAV ILQ YLD
Sbjct: 122 SIDKLAAVLILQNYLD 137
>gi|239827825|ref|YP_002950449.1| Holliday junction resolvase YqgF [Geobacillus sp. WCH70]
gi|259495706|sp|C5D4Z1.1|RUVX_GEOSW RecName: Full=Putative Holliday junction resolvase
gi|239808118|gb|ACS25183.1| Holliday junction resolvase YqgF [Geobacillus sp. WCH70]
Length = 138
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 12/142 (8%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD+G K +G+++SD A + + + + + R +I E+ ++ +VG+
Sbjct: 2 RVLGLDLGTKTLGVAVSDELGWTAQGIETISIDEERGEYGLKRLREIIDEYEVDTIVVGF 61
Query: 83 PFNRQQNA---ADAVQ--VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHP 137
P N A+A Q KL + S + W+E ++ E +L D+
Sbjct: 62 PKNMNGTVGPRAEASQRFAKLLESEFS-------LPVILWDERLSTMAAERMLITADVSR 114
Query: 138 VEYKTILDKFAAVGILQEYLDN 159
+ K ++DK AAV ILQ YLD+
Sbjct: 115 KKRKQVIDKMAAVVILQSYLDS 136
>gi|212638590|ref|YP_002315110.1| RNase H-like ribonuclease [Anoxybacillus flavithermus WK1]
gi|212560070|gb|ACJ33125.1| RNase H-like ribonuclease [Anoxybacillus flavithermus WK1]
Length = 145
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 8/140 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD G K +G+++SD A + + + + + R LI ++ +E +VG+
Sbjct: 7 RILGLDFGTKTLGVAVSDELGWTAQGIETIRIDEEHGEYGFDRLRQLIEQYAVEEIVVGF 66
Query: 83 PFNRQQNAA---DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
P N +A Q F + + T L W+E ++ E +L D+ +
Sbjct: 67 PKNMNGTIGPRGEATQ--RFAEQVKQTFSL---PVVLWDERLSTMAAERMLIAADVSRKK 121
Query: 140 YKTILDKFAAVGILQEYLDN 159
K ++DK AAV ILQ YLD+
Sbjct: 122 RKKVIDKMAAVMILQSYLDH 141
>gi|418322677|ref|ZP_12933991.1| RNAse H domain protein, YqgF family [Staphylococcus pettenkoferi
VCU012]
gi|365231124|gb|EHM72183.1| RNAse H domain protein, YqgF family [Staphylococcus pettenkoferi
VCU012]
Length = 142
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 70/147 (47%), Gaps = 7/147 (4%)
Query: 13 MLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISE 72
MLK K+ +GLDVG K VG++ISD A L L + DL E +I +
Sbjct: 1 MLKHKI------IGLDVGSKTVGVAISDLMGWTAQGLDTLRIDEENGDLGIEKLVDIIDK 54
Query: 73 FNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNP 132
+ I+G P N + + L + + ++ D++ W+E ++ E L
Sbjct: 55 EKVGTVIIGLPKNMNNSIGFRGEASLHYKE-TLQERRPDLEIKTWDERLSTMAAERSLLE 113
Query: 133 LDLHPVEYKTILDKFAAVGILQEYLDN 159
DL + K ++DK AAV ILQ YLD+
Sbjct: 114 ADLSRQKRKKVIDKMAAVFILQGYLDS 140
>gi|229198513|ref|ZP_04325217.1| Holliday junction resolvase [Bacillus cereus m1293]
gi|423573936|ref|ZP_17550055.1| RNAse H-fold protein YqgF [Bacillus cereus MSX-D12]
gi|423603966|ref|ZP_17579859.1| RNAse H-fold protein YqgF [Bacillus cereus VD102]
gi|228585016|gb|EEK43130.1| Holliday junction resolvase [Bacillus cereus m1293]
gi|401212505|gb|EJR19248.1| RNAse H-fold protein YqgF [Bacillus cereus MSX-D12]
gi|401245652|gb|EJR52005.1| RNAse H-fold protein YqgF [Bacillus cereus VD102]
Length = 137
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 8/140 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K VG++ISD A L + + + L+ +++++ +VG
Sbjct: 2 RILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGHFGFDRISELVKQYDVDKIVVGL 61
Query: 83 PFNRQQNAA---DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
P N +A Q F ++L ++L + W+E ++ E LL D+ +
Sbjct: 62 PKNMNGTIGPRGEACQ--QFAENL---RELLQLDVVMWDERLSTMAAERLLISADVSRKK 116
Query: 140 YKTILDKFAAVGILQEYLDN 159
K ++DK AAV ILQ +LD+
Sbjct: 117 RKQVIDKMAAVVILQGFLDS 136
>gi|418296123|ref|ZP_12907967.1| Holliday junction resolvase-like protein [Agrobacterium tumefaciens
CCNWGS0286]
gi|355539555|gb|EHH08793.1| Holliday junction resolvase-like protein [Agrobacterium tumefaciens
CCNWGS0286]
Length = 159
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 6/135 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+G K +GL++SD + A+P V+ R K T D AE + + + FI+G P N
Sbjct: 21 GLDLGTKTIGLAMSDLSRRFATPRPVIKRVKFTQD--AEVLLAFAEKEKVSAFIIGLPMN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
+A VQ + F+ + L + +W+E ++ E L +D+ + +
Sbjct: 79 MDGSAGPRVQATRAFVRTMGEKTAL---PFIFWDERLSTVAAERALLEMDVSRAKRAERI 135
Query: 145 DKFAAVGILQEYLDN 159
D AA ILQ LD
Sbjct: 136 DSAAASFILQGALDR 150
>gi|206975936|ref|ZP_03236846.1| conserved hypothetical protein TIGR00250 [Bacillus cereus H3081.97]
gi|217961876|ref|YP_002340446.1| Holliday junction resolvase-like protein [Bacillus cereus AH187]
gi|222097829|ref|YP_002531886.1| holliday junction resolvase-like protein [Bacillus cereus Q1]
gi|229141123|ref|ZP_04269665.1| Holliday junction resolvase [Bacillus cereus BDRD-ST26]
gi|375286390|ref|YP_005106829.1| hypothetical protein BCN_4296 [Bacillus cereus NC7401]
gi|423354877|ref|ZP_17332502.1| RNAse H-fold protein YqgF [Bacillus cereus IS075]
gi|423373654|ref|ZP_17350993.1| RNAse H-fold protein YqgF [Bacillus cereus AND1407]
gi|423570624|ref|ZP_17546869.1| RNAse H-fold protein YqgF [Bacillus cereus MSX-A12]
gi|226725487|sp|B7HQE4.1|RUVX_BACC7 RecName: Full=Putative Holliday junction resolvase
gi|254767497|sp|B9IYF1.1|RUVX_BACCQ RecName: Full=Putative Holliday junction resolvase
gi|206745688|gb|EDZ57085.1| conserved hypothetical protein TIGR00250 [Bacillus cereus H3081.97]
gi|217063507|gb|ACJ77757.1| conserved hypothetical protein TIGR00250 [Bacillus cereus AH187]
gi|221241887|gb|ACM14597.1| conserved hypothetical protein [Bacillus cereus Q1]
gi|228642401|gb|EEK98690.1| Holliday junction resolvase [Bacillus cereus BDRD-ST26]
gi|358354917|dbj|BAL20089.1| conserved hypothetical protein [Bacillus cereus NC7401]
gi|401085761|gb|EJP93997.1| RNAse H-fold protein YqgF [Bacillus cereus IS075]
gi|401095858|gb|EJQ03911.1| RNAse H-fold protein YqgF [Bacillus cereus AND1407]
gi|401203820|gb|EJR10655.1| RNAse H-fold protein YqgF [Bacillus cereus MSX-A12]
Length = 137
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 8/139 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K VG++ISD A L + + + L+ +++++ +VG
Sbjct: 2 RILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGQFGFDRISELVKQYDVDKIVVGL 61
Query: 83 PFNRQQNA---ADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
P N +A Q F ++L ++L + W+E ++ E LL D+ +
Sbjct: 62 PKNMNGTIGPRGEACQ--QFAENL---RELLQLDVVMWDERLSTMAAERLLISADVSRKK 116
Query: 140 YKTILDKFAAVGILQEYLD 158
K ++DK AAV ILQ +LD
Sbjct: 117 RKQVIDKMAAVVILQGFLD 135
>gi|150015990|ref|YP_001308244.1| Holliday junction resolvase-like protein [Clostridium beijerinckii
NCIMB 8052]
gi|189046092|sp|A6LSF8.1|RUVX_CLOB8 RecName: Full=Putative Holliday junction resolvase
gi|149902455|gb|ABR33288.1| Holliday junction resolvase YqgF [Clostridium beijerinckii NCIMB
8052]
Length = 138
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 70/141 (49%), Gaps = 4/141 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD+G K +G+++SDP A L+ + R D+ + + E++ + ++G
Sbjct: 2 RILGLDLGSKTIGVAVSDPLGFTAQGLTTVRRTNKEKDIA--EIKKFCDEYDAKVIVIGL 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N + ++ + + ++ +++ +W+E T+ + DL + K
Sbjct: 60 PKNMNGTIGPSGEIAMAFGKV--IEEELNVEVKFWDERLTTVAAHKAMLEADLSRNKRKK 117
Query: 143 ILDKFAAVGILQEYLDNANRK 163
I+DK A+ ILQ YLD +RK
Sbjct: 118 IVDKVASTYILQGYLDMISRK 138
>gi|395778176|ref|ZP_10458689.1| RNAse H-fold protein YqgF [Bartonella elizabethae Re6043vi]
gi|423715566|ref|ZP_17689790.1| RNAse H-fold protein YqgF [Bartonella elizabethae F9251]
gi|395418485|gb|EJF84812.1| RNAse H-fold protein YqgF [Bartonella elizabethae Re6043vi]
gi|395429693|gb|EJF95754.1| RNAse H-fold protein YqgF [Bartonella elizabethae F9251]
Length = 159
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 70/137 (51%), Gaps = 12/137 (8%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEG---FIVGY 82
GLD+G K +G++ISD +++P VL RKK T ED SLI F+ E I+G
Sbjct: 21 GLDLGTKTIGIAISDMGLIVSNPRPVLQRKKFT-----EDAHSLIKIFDHENVGVVIIGL 75
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N ++ VQ K F+ ++ K ++ + +W+E ++ E L +++ +
Sbjct: 76 PLNMNGSSGSRVQATKAFVSNM---KAYTEIPFVFWDERLSTIAAERSLLEMNVSRTKRA 132
Query: 142 TILDKFAAVGILQEYLD 158
+D AA ILQ L+
Sbjct: 133 NRIDSAAAAFILQGALN 149
>gi|163759344|ref|ZP_02166430.1| hypothetical protein HPDFL43_06250 [Hoeflea phototrophica DFL-43]
gi|162283748|gb|EDQ34033.1| hypothetical protein HPDFL43_06250 [Hoeflea phototrophica DFL-43]
Length = 162
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+G K +GL++SD +ASP V+ R+K T+D A D + + + ++G P N
Sbjct: 21 GLDLGTKTIGLAVSDLSRSLASPRPVIKRRKFTLD--AIDLLTALKRDQVGAVVIGLPVN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
+ VQ + F+ ++ + D+ + +W+E ++ E L +D+ + +
Sbjct: 79 MDGSEGPRVQATRAFVRNMI---EKTDLPFVFWDERLSTVAAERALIEMDVSRKKRAERI 135
Query: 145 DKFAAVGILQEYLDN 159
D AA ILQ LD
Sbjct: 136 DSAAASFILQGALDR 150
>gi|296170782|ref|ZP_06852354.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295894597|gb|EFG74334.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Mycobacterium parascrofulaceum ATCC BAA-614]
Length = 169
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 71/152 (46%), Gaps = 11/152 (7%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNT--IDLMAEDFRSLISEFNLEGF 78
RGR LG+DVG +G++ SDP +A+P+ + R ++ + +AE L +E
Sbjct: 21 RGRRLGVDVGSVRIGVACSDPDGILATPVETVRRDRSGKHVRRLAE----LAAELGAVEV 76
Query: 79 IVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHP 137
+VG P + A+ D L+ ++L +E T+ + L +
Sbjct: 77 VVGLPRTLADRTGPSALDAMELADTLA--QRLAPTPVRLADERLTTVSAQRSLRAAGVRA 134
Query: 138 VEYKTILDKFAAVGILQEYLDNANRKVNLKAN 169
E + ++D+ AAV ILQ +LD R+ L A
Sbjct: 135 KEQRAVIDQAAAVAILQSWLD--QRRATLTAG 164
>gi|240850656|ref|YP_002972056.1| putative Holliday junction resolvase [Bartonella grahamii as4aup]
gi|240267779|gb|ACS51367.1| putative Holliday junction resolvase [Bartonella grahamii as4aup]
Length = 159
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 12/137 (8%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEG---FIVGY 82
GLD+G K +G++ISD +++P VL RKK T ED +LI F+ E I+G
Sbjct: 21 GLDLGTKTIGIAISDMGLTVSNPRPVLQRKKFT-----EDAYTLIKIFDRENVGVIIIGL 75
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N ++ VQ + F+ ++ A K+ + +W+E ++ E L +++ +
Sbjct: 76 PLNMNGSSGSRVQATRAFVSNMKAYTKI---PFVFWDERLSTIAAERSLLEMNVSRAKRA 132
Query: 142 TILDKFAAVGILQEYLD 158
+ +D AA ILQ L+
Sbjct: 133 SRIDSAAAAFILQGALN 149
>gi|320101933|ref|YP_004177524.1| Holliday junction resolvase YqgF [Isosphaera pallida ATCC 43644]
gi|319749215|gb|ADV60975.1| Holliday junction resolvase YqgF [Isosphaera pallida ATCC 43644]
Length = 183
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 71/140 (50%), Gaps = 6/140 (4%)
Query: 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAE--DFRSLISEFNLEGFI 79
G L LD G K VGL+ISDP IASPL L R E + L+ E ++ +
Sbjct: 2 GTILALDHGLKRVGLAISDPGRSIASPLGRLERPGGEAGFTTEIQTLKRLVREHGVDRLV 61
Query: 80 VGYPFNRQ-QNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
+G P + +++ A + + D ++ K+L + Y +E +++K + L+ L
Sbjct: 62 MGLPVHTSGRDSPQARAARQWGDRVA--KEL-GLTIIYVDERYSTKHADELMREAGLSAA 118
Query: 139 EYKTILDKFAAVGILQEYLD 158
+ K +D AAV IL++YLD
Sbjct: 119 KRKRRVDSLAAVVILRDYLD 138
>gi|154686879|ref|YP_001422040.1| Holliday junction resolvase-like protein [Bacillus
amyloliquefaciens FZB42]
gi|308174438|ref|YP_003921143.1| Holliday junction resolvase [Bacillus amyloliquefaciens DSM 7]
gi|375363153|ref|YP_005131192.1| Holliday junction resolvase-like protein [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|384266287|ref|YP_005421994.1| Holliday junction resolvase-like protein [Bacillus
amyloliquefaciens subsp. plantarum YAU B9601-Y2]
gi|385265621|ref|ZP_10043708.1| Holliday junction resolvase [Bacillus sp. 5B6]
gi|387899318|ref|YP_006329614.1| putative holliday junction resolvase [Bacillus amyloliquefaciens
Y2]
gi|394991978|ref|ZP_10384772.1| Holliday junction resolvase-like protein [Bacillus sp. 916]
gi|421730857|ref|ZP_16169983.1| Holliday junction resolvase-like protein [Bacillus
amyloliquefaciens subsp. plantarum M27]
gi|451346113|ref|YP_007444744.1| Holliday junction resolvase-like protein [Bacillus
amyloliquefaciens IT-45]
gi|452856396|ref|YP_007498079.1| putative Holliday junction resolvase [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
gi|167012691|sp|A7Z733.1|RUVX_BACA2 RecName: Full=Putative Holliday junction resolvase
gi|154352730|gb|ABS74809.1| YrrK [Bacillus amyloliquefaciens FZB42]
gi|307607302|emb|CBI43673.1| putative Holliday junction resolvase [Bacillus amyloliquefaciens
DSM 7]
gi|371569147|emb|CCF05997.1| Holliday junction resolvase-like protein [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|380499640|emb|CCG50678.1| Holliday junction resolvase-like protein [Bacillus
amyloliquefaciens subsp. plantarum YAU B9601-Y2]
gi|385150117|gb|EIF14054.1| Holliday junction resolvase [Bacillus sp. 5B6]
gi|387173428|gb|AFJ62889.1| putative holliday junction resolvase [Bacillus amyloliquefaciens
Y2]
gi|393807190|gb|EJD68515.1| Holliday junction resolvase-like protein [Bacillus sp. 916]
gi|407075011|gb|EKE47998.1| Holliday junction resolvase-like protein [Bacillus
amyloliquefaciens subsp. plantarum M27]
gi|449849871|gb|AGF26863.1| Holliday junction resolvase-like protein [Bacillus
amyloliquefaciens IT-45]
gi|452080656|emb|CCP22421.1| putative Holliday junction resolvase [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
Length = 138
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 2/139 (1%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD+G K +G+++SD A + + + D + L+ ++N+E ++G+
Sbjct: 2 RILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLDRLSELMKDYNVEKIVLGF 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N + L T ++ W+E T+ E +L D+ + K
Sbjct: 62 PKNMNGTIGPRGEASQTFAKLLETAY--NVPVVLWDERLTTMAAEKMLIAADVSRQKRKK 119
Query: 143 ILDKFAAVGILQEYLDNAN 161
++DK AAV ILQ YLD+ N
Sbjct: 120 VIDKMAAVMILQGYLDSLN 138
>gi|357020311|ref|ZP_09082546.1| Holliday junction resolvase-like protein [Mycobacterium
thermoresistibile ATCC 19527]
gi|356480347|gb|EHI13480.1| Holliday junction resolvase-like protein [Mycobacterium
thermoresistibile ATCC 19527]
Length = 172
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 73/148 (49%), Gaps = 5/148 (3%)
Query: 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 81
GR LG+DVG +G++ SDP +A+PL + R+++ L +L++E + +VG
Sbjct: 24 GRRLGVDVGKVRIGVAASDPDGVLATPLETVRRERSGRHL--RRLAALVAELSAVEVVVG 81
Query: 82 YPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P A Q + + D A ++++ + +E T+ + L + + +
Sbjct: 82 LPRTLADRMGPAAQDAIALADELA-RRIDPVPVRLADERLTTVTAQRSLRAAGVRSRDQR 140
Query: 142 TILDKFAAVGILQEYLDNANRKVNLKAN 169
++D+ AAV ILQ +LD R+ L A
Sbjct: 141 AMIDQVAAVDILQGWLD--QRRAALSAR 166
>gi|254439741|ref|ZP_05053235.1| conserved hypothetical protein TIGR00250 [Octadecabacter
antarcticus 307]
gi|198255187|gb|EDY79501.1| conserved hypothetical protein TIGR00250 [Octadecabacter
antarcticus 307]
Length = 162
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 67/145 (46%), Gaps = 9/145 (6%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+G K +G+++SD IASPL + R K D + + S + G ++G P N
Sbjct: 21 GLDLGTKTIGVAVSDGGLTIASPLETIKRSKFQADAL--RLFEITSHRAIAGIVLGLPRN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
+ Q + F +LS +L D+ YW+E ++ E L D ++
Sbjct: 79 MDGSEGPRAQSTRAFARNLS---RLTDLPITYWDERLSTVAAERALLEADTSRKRRAEVI 135
Query: 145 DKFAAVGILQEYLDNANRKVNLKAN 169
D AA ILQ LD R N+KA
Sbjct: 136 DNVAASIILQGMLD---RLRNIKAQ 157
>gi|306821649|ref|ZP_07455247.1| Holliday junction resolvase [Eubacterium yurii subsp. margaretiae
ATCC 43715]
gi|304550394|gb|EFM38387.1| Holliday junction resolvase [Eubacterium yurii subsp. margaretiae
ATCC 43715]
Length = 142
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 75/136 (55%), Gaps = 5/136 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD+G + +G+++SD A P + +R KN + M + +I E +++ +VG
Sbjct: 3 RILGLDIGKQKIGIAMSDLLGMTAQPKAT-IRSKNLEEQM-QKILDIIKENSIKEVVVGL 60
Query: 83 PFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P + ++ A+ K F++ L T K E++K Y +E +TSK L+ + + V+ K
Sbjct: 61 PKDINGKDGEQALWTKSFVEKL--TLKNENIKIIYIDERYTSKLALKNLSHMSMKKVKDK 118
Query: 142 TILDKFAAVGILQEYL 157
++D AA IL+ YL
Sbjct: 119 ELIDSLAAASILETYL 134
>gi|254465560|ref|ZP_05078971.1| conserved hypothetical protein TIGR00250 [Rhodobacterales bacterium
Y4I]
gi|206686468|gb|EDZ46950.1| conserved hypothetical protein TIGR00250 [Rhodobacterales bacterium
Y4I]
Length = 157
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 6/136 (4%)
Query: 24 FLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYP 83
+GLD+G K +G+++SD +A+PL + RKK + D A +I ++ G ++G P
Sbjct: 19 LMGLDLGTKTIGVAVSDRIGAVATPLETVKRKKFSTD--AARLLEIIQARDISGILLGLP 76
Query: 84 FNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
N Q + F +L +L D+ ++W+E ++ E L D
Sbjct: 77 RNMDGTEGPRCQSTRAFARNL---MQLTDLPISFWDERLSTVAAEKALLEADTTRKRRAE 133
Query: 143 ILDKFAAVGILQEYLD 158
++D AA ILQ LD
Sbjct: 134 VIDHVAASYILQGALD 149
>gi|377563166|ref|ZP_09792517.1| putative Holliday junction resolvase [Gordonia sputi NBRC 100414]
gi|377529414|dbj|GAB37682.1| putative Holliday junction resolvase [Gordonia sputi NBRC 100414]
Length = 142
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 71/140 (50%), Gaps = 5/140 (3%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV 80
RGR LG+DVG +G+++SDP +A+P+ + +D R+L+ E++ IV
Sbjct: 5 RGRRLGVDVGSVRIGVAVSDPDGILATPVETV--AGADVDAAVARLRALVEEYDAVEVIV 62
Query: 81 GYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
G P R + A + + F L+ + LE + + +E T+ + L+
Sbjct: 63 GLPKTLRNTDGPAAEKARAFGARLA--EGLEGISVVFSDERLTTVAAQQALHASGRSVKA 120
Query: 140 YKTILDKFAAVGILQEYLDN 159
+ ++D+ AAV ILQ +LD+
Sbjct: 121 SRGVIDQAAAVAILQGWLDS 140
>gi|317128239|ref|YP_004094521.1| Holliday junction resolvase YqgF [Bacillus cellulosilyticus DSM
2522]
gi|315473187|gb|ADU29790.1| Holliday junction resolvase YqgF [Bacillus cellulosilyticus DSM
2522]
Length = 142
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 72/148 (48%), Gaps = 11/148 (7%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSL---ISEFNLEGFI 79
+ LGLDVG +G++ISD A L + R K + +DF L I ++ +
Sbjct: 2 KVLGLDVGTHTIGVAISDAFGWTAQGLETIKRAKEDEE---QDFSRLDEIIRNKDVSTIV 58
Query: 80 VGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
VG P N + + + F + L K+ ++K W+E T+ E +L D+
Sbjct: 59 VGLPKNMNGTIGPSGELCQAFAEKL---KERTNLKVELWDERLTTVAAEKMLVSADVSRK 115
Query: 139 EYKTILDKFAAVGILQEYLDNANRKVNL 166
+ K ++DK AAV ILQ YLD N K NL
Sbjct: 116 KRKKVIDKMAAVMILQGYLDR-NPKSNL 142
>gi|358065260|ref|ZP_09151807.1| Holliday junction resolvase [Clostridium hathewayi WAL-18680]
gi|356696494|gb|EHI58106.1| Holliday junction resolvase [Clostridium hathewayi WAL-18680]
Length = 138
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 3/138 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRK-KNTIDLMAEDFRSLISEFNLEGFIVG 81
R +GLD G K VG+++SD A + + RK +N + +LI E+ +E ++G
Sbjct: 2 RIMGLDFGSKTVGVAVSDALGLTAQGVETITRKDENKLRQTLARIETLIGEYEIETIVLG 61
Query: 82 YPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
YP N + + K + + ++ + W+E T+ E +L + K
Sbjct: 62 YPKNMNDTVGE--RAKKTEEFKAMLERRTGLPVILWDERLTTVAAEEILIESGVRREHRK 119
Query: 142 TILDKFAAVGILQEYLDN 159
++DK AA ILQ YLD+
Sbjct: 120 EVIDKIAAGIILQGYLDS 137
>gi|385261657|ref|ZP_10039774.1| RNAse H domain protein, YqgF family [Streptococcus sp. SK643]
gi|385192379|gb|EIF39784.1| RNAse H domain protein, YqgF family [Streptococcus sp. SK643]
Length = 139
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 9/140 (6%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ + + + L+ + ++ F+VG
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRIKELVDSYKVDRFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTSKGVE-LLLNPLDLHPV 138
P N + V+ + KLE+ + Y +E T+ E +L+ D+
Sbjct: 62 PKNMNNTSGPRVEAS-----QAYGAKLEELFGLPVDYQDERLTTVAAERMLIEQADISRN 116
Query: 139 EYKTILDKFAAVGILQEYLD 158
+ K ++DK AA ILQ YLD
Sbjct: 117 KRKKVIDKLAAQLILQNYLD 136
>gi|238063897|ref|ZP_04608606.1| Holliday junction resolvase yqgF [Micromonospora sp. ATCC 39149]
gi|237885708|gb|EEP74536.1| Holliday junction resolvase yqgF [Micromonospora sp. ATCC 39149]
Length = 153
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 70/149 (46%), Gaps = 9/149 (6%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTID-----LMAEDFRSLISEFNL 75
RG LG+DVG VG++ SDP +A+PL L R T D MAE +LI+E
Sbjct: 6 RGVRLGVDVGQVRVGVARSDPHGVLATPLVTLARDLTTADDAVPSDMAE-LVALIAEHEC 64
Query: 76 EGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLD 134
+VG P N Q+ A VK + D L+ + + +E ++ L
Sbjct: 65 VEVVVGLPINLAGQHGPAARNVKAYADRLA--DVIAPVPVTLTDERMSTVVASRRLAEGG 122
Query: 135 LHPVEYKTILDKFAAVGILQEYLDNANRK 163
+ + ++D+ AAV ILQ +LD R+
Sbjct: 123 VRGKRRRAVVDQAAAVEILQSWLDAQRRR 151
>gi|404328460|ref|ZP_10968908.1| Holliday junction resolvase-like protein [Sporolactobacillus vineae
DSM 21990 = SL153]
Length = 147
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 67/137 (48%), Gaps = 2/137 (1%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLD G VG+++SDP A + + ++ +L+ + LI ++ +E +VG
Sbjct: 2 RIMGLDFGSVTVGVAVSDPLGLTAQGIETVHYVQHKKNLLFDRLGELIHQYEVESLVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P R ++ + + + KK + W+E T+ E +L DL + K
Sbjct: 62 P--RDLIGTESQRAEASRGFAKSMKKKFHLPVMLWDERLTTVAAERILIDADLSRKKRKK 119
Query: 143 ILDKFAAVGILQEYLDN 159
++DK AAV ILQ YLD
Sbjct: 120 VIDKEAAVLILQSYLDK 136
>gi|315122522|ref|YP_004063011.1| Holliday junction resolvase YqgF [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495924|gb|ADR52523.1| Holliday junction resolvase YqgF [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 167
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 68/134 (50%), Gaps = 5/134 (3%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
+D+G K +G++ISD + A P L+RKK I A + S + N+ F++G P N
Sbjct: 21 SIDLGTKKIGIAISDLGRRFAHPRPFLIRKK--ITQTALELLSFATTENIAAFVIGLPLN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
+ VQ + F+ ++ + ++ + +W+E T+ + +L +D+ + +
Sbjct: 79 MNGSEGPRVQSTRAFVQNM--IDREINVPFIFWDERLTTVSAQQILIDMDVSRKKRAQKV 136
Query: 145 DKFAAVGILQEYLD 158
D AA ILQE LD
Sbjct: 137 DSIAASLILQEVLD 150
>gi|332981265|ref|YP_004462706.1| Holliday junction resolvase YqgF [Mahella australiensis 50-1 BON]
gi|332698943|gb|AEE95884.1| Holliday junction resolvase YqgF [Mahella australiensis 50-1 BON]
Length = 144
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 2/137 (1%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVGD +G++ISD A L RK+ D+ + + + ++ ++G
Sbjct: 2 RILGLDVGDNTIGIAISDELGWTAQGLETWRRKQPEADM--QHIVDICQKSGVQCIVIGL 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N + + + A +D+ W+E ++ + L D+ + K
Sbjct: 60 PKNMNGSIGPQGKKVIAFKQRLADYMADDIDIVLWDERLSTVAAQRSLIEADVSRAKRKK 119
Query: 143 ILDKFAAVGILQEYLDN 159
++DK AAV ILQ YLD+
Sbjct: 120 VIDKMAAVYILQGYLDS 136
>gi|419706365|ref|ZP_14233889.1| Putative Holliday junction resolvase [Streptococcus salivarius PS4]
gi|383283877|gb|EIC81817.1| Putative Holliday junction resolvase [Streptococcus salivarius PS4]
Length = 139
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 73/142 (51%), Gaps = 13/142 (9%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDF-----RSLISEFNLEG 77
R +GLDVG K VG++ISDP A + ++ ID AE+F L+ E+ ++
Sbjct: 2 RVMGLDVGSKTVGIAISDPLGFTAQGVEII-----KIDEEAEEFGFDRLGELVKEYKVDK 56
Query: 78 FIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLH 136
F+VG P N N + +V+ + K++ + Y +E T+ E +L+ D+
Sbjct: 57 FVVGLPKN--MNNTEGPRVEASKAYGNKIKEIFGIPVDYQDERLTTVQAERMLVEQADVS 114
Query: 137 PVEYKTILDKFAAVGILQEYLD 158
+ K ++DK AA ILQ YLD
Sbjct: 115 RGKRKKVIDKLAAQLILQNYLD 136
>gi|296333169|ref|ZP_06875622.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305675325|ref|YP_003866997.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
spizizenii str. W23]
gi|350266909|ref|YP_004878216.1| hypothetical protein GYO_2980 [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|296149367|gb|EFG90263.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305413569|gb|ADM38688.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
spizizenii str. W23]
gi|349599796|gb|AEP87584.1| conserved hypothetical protein [Bacillus subtilis subsp. spizizenii
TU-B-10]
Length = 138
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 8/142 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD+G K +G+++SD A + + + D LI E+ ++ ++G+
Sbjct: 2 RILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLSRLSELIKEYTIDKIVLGF 61
Query: 83 PFNRQQNAA---DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
P N +A Q F L T ++ W+E T+ E +L D+ +
Sbjct: 62 PKNMNGTVGPRGEASQT--FAKVLETTY---NVPVVLWDERLTTMAAEKMLIAADVSRQK 116
Query: 140 YKTILDKFAAVGILQEYLDNAN 161
K ++DK AAV ILQ YLD+ N
Sbjct: 117 RKKVIDKMAAVMILQGYLDSLN 138
>gi|428298193|ref|YP_007136499.1| holliday junction resolvase [Calothrix sp. PCC 6303]
gi|428234737|gb|AFZ00527.1| Holliday junction resolvase [Calothrix sp. PCC 6303]
Length = 173
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 78/154 (50%), Gaps = 8/154 (5%)
Query: 15 KRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFN 74
++K SK L LDVG K +G++ D IA+ ++ + R K D+ E R L+ E
Sbjct: 23 QQKNSKYVLALALDVGTKRIGVAGCDRTGLIATGITTIERTKWESDV--EQIRQLVEERE 80
Query: 75 LEGFIVGYPFNRQQNAA-DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPL 133
+ +VG P++ + A Q + F LS K+ + Y +E TS E +L
Sbjct: 81 INILVVGLPYSMDGSIGFQAKQTQKFAKKLS---KILKLPVEYVDERLTSYQAEQMLLAE 137
Query: 134 DLHPVEYKTILDKFAAVGILQEYLDNANRKVNLK 167
P +K ++D+ AA ILQ++LD RK+N++
Sbjct: 138 RKSPSRHKGLIDRKAAALILQQWLD--ARKINVE 169
>gi|163868299|ref|YP_001609508.1| putative resolvase [Bartonella tribocorum CIP 105476]
gi|189046086|sp|A9IU51.1|RUVX_BART1 RecName: Full=Putative Holliday junction resolvase
gi|161017955|emb|CAK01513.1| putative resolvase [Bartonella tribocorum CIP 105476]
Length = 156
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 15/147 (10%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEG---FIVGY 82
GLD+G K +G++ISD +++P VL RKK T ED LI F+ E ++G
Sbjct: 21 GLDLGTKTIGIAISDMGLTVSNPRPVLQRKKFT-----EDAHRLIKIFDHENVGVIVIGL 75
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N ++ VQ + F+ ++ A K+ + +W+E ++ E L +++ ++
Sbjct: 76 PLNMNGSSGSRVQATRAFVSNMKAYTKI---PFVFWDERLSTIAAERSLLEMNVSRIKRA 132
Query: 142 TILDKFAAVGILQEYLDNANRKVNLKA 168
+D AA ILQ L NR NL +
Sbjct: 133 RRIDSAAAAFILQGAL---NRIENLHS 156
>gi|365924473|ref|ZP_09447236.1| Holliday junction resolvase-like protein [Lactobacillus mali KCTC
3596 = DSM 20444]
gi|420265361|ref|ZP_14767923.1| Holliday junction resolvase-like protein [Lactobacillus mali KCTC
3596 = DSM 20444]
gi|394428193|gb|EJF00776.1| Holliday junction resolvase-like protein [Lactobacillus mali KCTC
3596 = DSM 20444]
Length = 145
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISD A + ++ ++ + E + L+ ++ + GF+VG
Sbjct: 3 RLMGLDVGSKTVGIAISDLLGWTAQGIEIIPIDEDNEEFGIERVKELVQQYEISGFVVGL 62
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + V+ +L K+ + + +E T+ E +L+ D + K
Sbjct: 63 PKNMNNTSGPRVEASKKYGEL--LKETFGLPIDFQDERLTTVAAERMLVEQADTSRKKRK 120
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 121 KVIDKLAAGLILQNYLD 137
>gi|291539698|emb|CBL12809.1| conserved hypothetical protein TIGR00250 [Roseburia intestinalis
XB6B4]
Length = 144
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 66/138 (47%), Gaps = 5/138 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKK-NTIDLMAEDFRSLISEFNLEGFIVG 81
R LGLD G K VGL++SD A L ++ R+ N + ++I+E+ +E ++G
Sbjct: 2 RILGLDFGSKTVGLAVSDELLLTAQGLEIIRRQSPNKLRQTLARIEAIIAEYQVECIVLG 61
Query: 82 YPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
YP N + + K F + L LE W+E T+ + + + +
Sbjct: 62 YPKNMNNTEGERCEKTKEFKEMLERRTGLE---VILWDERLTTVSADKHMMESGIRREDR 118
Query: 141 KTILDKFAAVGILQEYLD 158
K +D+ AAV ILQ YLD
Sbjct: 119 KKYVDEIAAVFILQGYLD 136
>gi|189502649|ref|YP_001958366.1| Holliday junction resolvase-like protein [Candidatus Amoebophilus
asiaticus 5a2]
gi|226725481|sp|B3ETT5.1|RUVX_AMOA5 RecName: Full=Putative Holliday junction resolvase
gi|189498090|gb|ACE06637.1| hypothetical protein Aasi_1327 [Candidatus Amoebophilus asiaticus
5a2]
Length = 141
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 73/144 (50%), Gaps = 10/144 (6%)
Query: 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 81
GR + +D G K VGLS++DP IASPL+ + +T+ + ++ + + N+E F+VG
Sbjct: 2 GRIMAIDYGLKRVGLSVTDPLQIIASPLTTVA-ANDTLTFL----QTYVKKENVEAFVVG 56
Query: 82 YPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSK--GVELLLNPLDLHPV 138
YP + + +N V + FI+ L + D + +E +TSK L+
Sbjct: 57 YPTDIKDKNTPIIVAISQFIELLQ--RNFPDQQIFQHDERYTSKLAAASLVEGGFKKKDR 114
Query: 139 EYKTILDKFAAVGILQEYLDNANR 162
K LDK +A ILQ +L + R
Sbjct: 115 RNKENLDKLSATIILQSFLSSYKR 138
>gi|324999313|ref|ZP_08120425.1| Holliday junction resolvase-like protein [Pseudonocardia sp. P1]
Length = 142
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 11/143 (7%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFR---SLISEFNLEG 77
RGR LG+DVG VG+++ DP +A+P+ + R D R L++E ++ G
Sbjct: 5 RGRRLGVDVGAVRVGVAMCDPDGILATPVETVPRDAE----HGADVRRIAELVAEHDVVG 60
Query: 78 FIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH 136
++G P N R ++ A + F D L A D+ +E T+ L+ +
Sbjct: 61 VVLGLPRNLRGEDGPAARAAREFADALQAGL---DVPVELTDERMTTVVAARQLSGRGVK 117
Query: 137 PVEYKTILDKFAAVGILQEYLDN 159
+ ++++D+ AAV ILQ +LD
Sbjct: 118 GRKQRSVVDQAAAVQILQGWLDQ 140
>gi|103486415|ref|YP_615976.1| Holliday junction resolvase YqgF [Sphingopyxis alaskensis RB2256]
gi|124107445|sp|Q1GUM9.1|RUVX_SPHAL RecName: Full=Putative Holliday junction resolvase
gi|98976492|gb|ABF52643.1| Holliday junction resolvase YqgF [Sphingopyxis alaskensis RB2256]
Length = 152
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 7/142 (4%)
Query: 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 81
GR GLDVG K +G+++ D ASP ++RK+ + DL + ++L++ + G +VG
Sbjct: 17 GRLAGLDVGTKTIGVALCDAGWSFASPDKTIVRKRFSADL--DALKALVAGQAVVGLVVG 74
Query: 82 YPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
P N + + Q + F +L+ + W+E +++ VE + D+ +
Sbjct: 75 LPLNMDGSDSPRTQSTRAFARNLAPLG----LPVLLWDERWSTAAVERAMIAADVSRAKR 130
Query: 141 KTILDKFAAVGILQEYLDNANR 162
+D AA ILQ +D R
Sbjct: 131 AERIDSAAAAFILQGAIDAMTR 152
>gi|67923975|ref|ZP_00517429.1| Conserved hypothetical protein 250 [Crocosphaera watsonii WH 8501]
gi|67854195|gb|EAM49500.1| Conserved hypothetical protein 250 [Crocosphaera watsonii WH 8501]
Length = 143
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 71/136 (52%), Gaps = 6/136 (4%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
LGLDVG K +G++ D IA+ L+ + RK D+ + ++L++E N++ +VG P+
Sbjct: 7 LGLDVGKKRIGVAGCDGTGLIATGLTTIERKSFPQDV--QQLQALVTERNVQLLVVGLPY 64
Query: 85 NRQQNAA-DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143
+ A QV+ F +S K LE + Y +E TS E L + K +
Sbjct: 65 CMDGSIGFQAKQVQKFAKRIS--KALE-LPVEYMDERLTSVEAETHLKAQKKYSRHNKGL 121
Query: 144 LDKFAAVGILQEYLDN 159
+D+ AA ILQ++LD
Sbjct: 122 VDRLAATIILQQWLDQ 137
>gi|423395319|ref|ZP_17372520.1| RNAse H-fold protein YqgF [Bacillus cereus BAG2X1-1]
gi|423406194|ref|ZP_17383343.1| RNAse H-fold protein YqgF [Bacillus cereus BAG2X1-3]
gi|401654730|gb|EJS72269.1| RNAse H-fold protein YqgF [Bacillus cereus BAG2X1-1]
gi|401660188|gb|EJS77670.1| RNAse H-fold protein YqgF [Bacillus cereus BAG2X1-3]
Length = 137
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 70/140 (50%), Gaps = 8/140 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K VG+++SD A L + + + L+ +++++ +VG
Sbjct: 2 RILGLDVGTKTVGVAMSDEMGWTAQGLETIKINEERGHFGFDRISELVKQYDVDKIVVGL 61
Query: 83 PFNRQQNAA---DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
P N +A Q F ++L ++L ++ W+E ++ E LL D+ +
Sbjct: 62 PKNMNGTIGPRGEACQ--QFAENL---RELLQLEVVMWDERLSTMAAERLLISADVSRKK 116
Query: 140 YKTILDKFAAVGILQEYLDN 159
K ++DK AAV ILQ +LD+
Sbjct: 117 RKQVIDKMAAVVILQGFLDS 136
>gi|332523405|ref|ZP_08399657.1| RNAse H domain protein, YqgF family [Streptococcus porcinus str.
Jelinkova 176]
gi|332314669|gb|EGJ27654.1| RNAse H domain protein, YqgF family [Streptococcus porcinus str.
Jelinkova 176]
Length = 139
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ ++ + L++++++ F+VG
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEDNQAFGFDRLSELVAQYDVSQFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + V+ ++L + Y +E T+ E +L+ D+ + K
Sbjct: 62 PKNMNNTSGPRVEASQAYG--QKIQELFKIPVVYQDERLTTVEAERMLIEQADISRGKRK 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 120 KVIDKLAAQLILQNYLD 136
>gi|253574901|ref|ZP_04852241.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
str. D14]
gi|251845947|gb|EES73955.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
str. D14]
Length = 138
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 71/142 (50%), Gaps = 6/142 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
+ +GLD GD+ +G+++SD A L + R+K + E L+ + +E +VG
Sbjct: 2 KIMGLDYGDRRIGVAVSDSLGWTAQGLETIERRKEGSEF--ERIAELVKQHEVEEIVVGL 59
Query: 83 PFNRQQNAADAVQVKL-FIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N ++ + F +DL A KL ++ W+E T+ + L D+ + K
Sbjct: 60 PKNMNGTIGPRGEICMAFAEDLRA--KL-NLPVHLWDERLTTVSAQRTLLDADVSRKKRK 116
Query: 142 TILDKFAAVGILQEYLDNANRK 163
++DK AA ILQ YLD+ + K
Sbjct: 117 GVVDKMAASLILQNYLDSKSIK 138
>gi|153815342|ref|ZP_01968010.1| hypothetical protein RUMTOR_01576 [Ruminococcus torques ATCC 27756]
gi|317501696|ref|ZP_07959887.1| hypothetical protein HMPREF1026_01831 [Lachnospiraceae bacterium
8_1_57FAA]
gi|331088419|ref|ZP_08337334.1| Holliday junction resolvase [Lachnospiraceae bacterium 3_1_46FAA]
gi|336439852|ref|ZP_08619456.1| Holliday junction resolvase [Lachnospiraceae bacterium 1_1_57FAA]
gi|145847404|gb|EDK24322.1| RNAse H domain protein, YqgF family [Ruminococcus torques ATCC
27756]
gi|316896947|gb|EFV19027.1| hypothetical protein HMPREF1026_01831 [Lachnospiraceae bacterium
8_1_57FAA]
gi|330408186|gb|EGG87674.1| Holliday junction resolvase [Lachnospiraceae bacterium 3_1_46FAA]
gi|336014768|gb|EGN44600.1| Holliday junction resolvase [Lachnospiraceae bacterium 1_1_57FAA]
Length = 145
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRK-KNTIDLMAEDFRSLISEFNLEGFIVG 81
R +GLD G K VG++ISD A + + RK +N + LI ++++E ++G
Sbjct: 2 RIMGLDYGSKTVGVAISDALRLTAQAVETIERKEENKLRRTCARIEELIKKYDVEKIVLG 61
Query: 82 YPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
+P + + + Q + ++ K+ ++ W+E T+ E L ++ K
Sbjct: 62 FPKHMNNDIGERAQQSMEFGEM--LKRRTGLEVILWDERLTTVEAERTLIESNVRRENRK 119
Query: 142 TILDKFAAVGILQEYLD 158
+D+ AAV ILQ YLD
Sbjct: 120 KHIDQIAAVFILQGYLD 136
>gi|427706624|ref|YP_007049001.1| holliday junction resolvase [Nostoc sp. PCC 7107]
gi|427359129|gb|AFY41851.1| Holliday junction resolvase [Nostoc sp. PCC 7107]
Length = 157
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 70/136 (51%), Gaps = 6/136 (4%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
LGLDVG K +G++ D IA+ ++ + R D+ E F++++ E +E +VG P+
Sbjct: 12 LGLDVGSKRIGVAGCDRTGLIATGITTVERSSFERDV--EQFQNIVDEREVEILVVGLPY 69
Query: 85 NRQQNAA-DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143
+ + A QV+ F + L KL Y +E TS E +L + P K +
Sbjct: 70 SMDGSLGFQARQVQKFANRLGKALKL---PIEYVDERLTSYQAEQMLIAEKVSPSRNKGL 126
Query: 144 LDKFAAVGILQEYLDN 159
+D+ AA ILQ++LD
Sbjct: 127 IDRKAAALILQQWLDT 142
>gi|169829318|ref|YP_001699476.1| Holliday junction resolvase [Lysinibacillus sphaericus C3-41]
gi|168993806|gb|ACA41346.1| Putative Holliday junction resolvase [Lysinibacillus sphaericus
C3-41]
Length = 135
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 71/146 (48%), Gaps = 20/146 (13%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPL-SVLLRKKNT---IDLMAEDFRSLISEFNLEGFIV 80
+GLDVG K VG+++SD A + +V + + N ID +AE L+ E+ + F+V
Sbjct: 1 MGLDVGSKTVGVAVSDALGWTAQGIETVKIDEANGEFGIDRIAE----LVKEYAITQFVV 56
Query: 81 GYPFNRQQNAADAVQV-----KLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDL 135
G+P N + KL + S + W+E T+ E +L D+
Sbjct: 57 GFPTNMNNTVGPRGEASENYKKLLEETFS-------LPVTLWDERLTTMAAERMLIEADV 109
Query: 136 HPVEYKTILDKFAAVGILQEYLDNAN 161
+ K ++DK AAV I+Q YLD+ N
Sbjct: 110 SRRKRKQVIDKMAAVMIVQGYLDSKN 135
>gi|116491182|ref|YP_810726.1| RNase H-like ribonuclease [Oenococcus oeni PSU-1]
gi|118587361|ref|ZP_01544787.1| Hollyday junction resolvase [Oenococcus oeni ATCC BAA-1163]
gi|290890698|ref|ZP_06553768.1| hypothetical protein AWRIB429_1158 [Oenococcus oeni AWRIB429]
gi|419758727|ref|ZP_14285041.1| RNase H-like ribonuclease [Oenococcus oeni AWRIB304]
gi|419857905|ref|ZP_14380606.1| RNase H-like ribonuclease [Oenococcus oeni AWRIB202]
gi|419858415|ref|ZP_14381088.1| RNase H-like ribonuclease [Oenococcus oeni DSM 20252 = AWRIB129]
gi|421184066|ref|ZP_15641493.1| RNase H-like ribonuclease [Oenococcus oeni AWRIB318]
gi|421187403|ref|ZP_15644763.1| RNase H-like ribonuclease [Oenococcus oeni AWRIB419]
gi|421190555|ref|ZP_15647853.1| RNase H-like ribonuclease [Oenococcus oeni AWRIB422]
gi|421191489|ref|ZP_15648763.1| RNase H-like ribonuclease [Oenococcus oeni AWRIB548]
gi|421195593|ref|ZP_15652798.1| RNase H-like ribonuclease [Oenococcus oeni AWRIB568]
gi|421197705|ref|ZP_15654877.1| RNase H-like ribonuclease [Oenococcus oeni AWRIB576]
gi|122276636|sp|Q04ER1.1|RUVX_OENOB RecName: Full=Putative Holliday junction resolvase
gi|116091907|gb|ABJ57061.1| RNase H-like ribonuclease [Oenococcus oeni PSU-1]
gi|118432185|gb|EAV38925.1| Hollyday junction resolvase [Oenococcus oeni ATCC BAA-1163]
gi|290479673|gb|EFD88327.1| hypothetical protein AWRIB429_1158 [Oenococcus oeni AWRIB429]
gi|399904557|gb|EJN92011.1| RNase H-like ribonuclease [Oenococcus oeni AWRIB304]
gi|399968300|gb|EJO02752.1| RNase H-like ribonuclease [Oenococcus oeni AWRIB318]
gi|399969202|gb|EJO03625.1| RNase H-like ribonuclease [Oenococcus oeni AWRIB419]
gi|399969607|gb|EJO03937.1| RNase H-like ribonuclease [Oenococcus oeni AWRIB422]
gi|399971607|gb|EJO05847.1| RNase H-like ribonuclease [Oenococcus oeni AWRIB548]
gi|399974757|gb|EJO08840.1| RNase H-like ribonuclease [Oenococcus oeni AWRIB576]
gi|399975423|gb|EJO09475.1| RNase H-like ribonuclease [Oenococcus oeni AWRIB568]
gi|410497057|gb|EKP88535.1| RNase H-like ribonuclease [Oenococcus oeni AWRIB202]
gi|410498851|gb|EKP90296.1| RNase H-like ribonuclease [Oenococcus oeni DSM 20252 = AWRIB129]
Length = 144
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 3/144 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K VG++ SDP AS + ++ + + + +ISE + G ++G
Sbjct: 2 RLLGLDVGSKTVGVAQSDPLGWTASSIEIIRINEAQGEFGLDRLGQIISEKKVSGIVIGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTS-KGVELLLNPLDLHPVEYK 141
P N V+ + + + + Y +E TS + +L+ DL + K
Sbjct: 62 PKNMNNTEGPRVEASRNYGKMVSERF--GLPIDYQDERLTSVEANRMLIEEADLSRAKRK 119
Query: 142 TILDKFAAVGILQEYLDNANRKVN 165
++D AA ILQ YLD R N
Sbjct: 120 KVIDSLAAQLILQNYLDKKGRLTN 143
>gi|319892670|ref|YP_004149545.1| Holliday junction resolvase [Staphylococcus pseudintermedius
HKU10-03]
gi|386319121|ref|YP_006015284.1| Holliday junction resolvase [Staphylococcus pseudintermedius ED99]
gi|317162366|gb|ADV05909.1| Putative Holliday junction resolvase [Staphylococcus
pseudintermedius HKU10-03]
gi|323464292|gb|ADX76445.1| Holliday junction resolvase, putative [Staphylococcus
pseudintermedius ED99]
Length = 142
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 72/149 (48%), Gaps = 7/149 (4%)
Query: 13 MLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISE 72
MLK K+ +GLDVG + VG++ISD A L L + +L + +I +
Sbjct: 1 MLKHKI------IGLDVGSRTVGIAISDLMGWTAQGLDTLQINEEENELGIDALIDIIQK 54
Query: 73 FNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNP 132
N+ ++G P N + + L D A +++ +++ W+E ++ E L
Sbjct: 55 ENVGTVVIGLPKNMNNSIGFRGEASLKYKDALA-ERMPNLEIIMWDERLSTMAAERSLLE 113
Query: 133 LDLHPVEYKTILDKFAAVGILQEYLDNAN 161
D+ + K ++DK AAV ILQ YLD N
Sbjct: 114 ADVSRAKRKKVIDKMAAVFILQGYLDGLN 142
>gi|433444224|ref|ZP_20409188.1| RNase H-like ribonuclease [Anoxybacillus flavithermus TNO-09.006]
gi|432001718|gb|ELK22588.1| RNase H-like ribonuclease [Anoxybacillus flavithermus TNO-09.006]
Length = 140
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 8/140 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD G K +G+++SD A + + + + + R LI ++ +E ++G+
Sbjct: 2 RILGLDFGTKTLGVAVSDELGWTAQGIETIRIDEENGEYGFDRLRQLIEQYAVEEIVIGF 61
Query: 83 PFNRQQNA---ADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
P N +A Q F + + T L W+E ++ E +L D+ +
Sbjct: 62 PKNMNGTIGPRGEATQ--RFAEQVKQTFSL---PVVLWDERLSTMAAERMLIAADVSRKK 116
Query: 140 YKTILDKFAAVGILQEYLDN 159
K ++DK AAV ILQ YLD+
Sbjct: 117 RKKVIDKMAAVMILQSYLDH 136
>gi|83943004|ref|ZP_00955464.1| hypothetical protein EE36_12523 [Sulfitobacter sp. EE-36]
gi|83846012|gb|EAP83889.1| hypothetical protein EE36_12523 [Sulfitobacter sp. EE-36]
Length = 161
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 6/136 (4%)
Query: 24 FLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYP 83
+GLD+G+K +G+++SD IA+PL + RKK +D A +I+ + G ++G P
Sbjct: 19 LIGLDLGEKTIGVAVSDSFLSIATPLETVRRKKFGVD--AARLSEIIAARGIGGVVLGLP 76
Query: 84 FNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
N + Q + F + +L D+ +W+E ++ E L D
Sbjct: 77 RNMDGSEGARCQSTRAFARNFD---RLGDIPIGFWDERLSTVAAERALLEADTSRRRRAE 133
Query: 143 ILDKFAAVGILQEYLD 158
++D AA ILQ LD
Sbjct: 134 VIDHVAAGYILQGVLD 149
>gi|218282249|ref|ZP_03488548.1| hypothetical protein EUBIFOR_01130 [Eubacterium biforme DSM 3989]
gi|218216787|gb|EEC90325.1| hypothetical protein EUBIFOR_01130 [Eubacterium biforme DSM 3989]
Length = 141
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 7/141 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLD+G K G+SI D + L+ + + + D E+ L+ E ++ ++G
Sbjct: 3 RIIGLDLGSKTCGVSICDALHITCRALTTVRFESDDYDACLEEVLKLLQENKVKEVVLGL 62
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLED--MKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
P + N ++ ++ + KKLE +K W+E T+ E +L D+ +
Sbjct: 63 P--KHMNGDIGIRGEISCE---FAKKLESSGIKVHLWDERLTTVAAEKILLQGDVSRKKR 117
Query: 141 KTILDKFAAVGILQEYLDNAN 161
K ++D+ AAV ILQ +LD N
Sbjct: 118 KKVIDQMAAVQILQSFLDRQN 138
>gi|83954179|ref|ZP_00962899.1| hypothetical protein NAS141_17774 [Sulfitobacter sp. NAS-14.1]
gi|83841216|gb|EAP80386.1| hypothetical protein NAS141_17774 [Sulfitobacter sp. NAS-14.1]
Length = 161
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 6/136 (4%)
Query: 24 FLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYP 83
+GLD+G+K +G+++SD IA+PL + RKK +D A +I+ + G ++G P
Sbjct: 19 LIGLDLGEKTIGVAVSDSFLSIATPLETVRRKKFGVD--ATRLSEIIAARGIGGVVLGLP 76
Query: 84 FNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
N + Q + F + +L D+ +W+E ++ E L D
Sbjct: 77 RNMDGSEGARCQSTRAFARNFD---RLGDIPIGFWDERLSTVAAERALLEADTSRRRRAE 133
Query: 143 ILDKFAAVGILQEYLD 158
++D AA ILQ LD
Sbjct: 134 VIDHVAAGYILQGVLD 149
>gi|411118865|ref|ZP_11391245.1| RNAse H-fold protein YqgF [Oscillatoriales cyanobacterium JSC-12]
gi|410710728|gb|EKQ68235.1| RNAse H-fold protein YqgF [Oscillatoriales cyanobacterium JSC-12]
Length = 155
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 6/136 (4%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
LGLD+G K VG++ D IA L+ L RK DL E R L+ + + +VG P+
Sbjct: 6 LGLDIGRKRVGVAGCDGTGLIAFGLTTLYRKSFQEDL--EQLRQLVRDREVTVLVVGLPY 63
Query: 85 NRQQNAA-DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143
+ A Q++ F + ++A L Y +E TS E +L + P K +
Sbjct: 64 SMDGTLGFQARQIQKFANAIAAELNL---PVVYIDERLTSFQAEQMLQAEGISPSRRKDL 120
Query: 144 LDKFAAVGILQEYLDN 159
+D+ AA ILQ++LD
Sbjct: 121 IDRKAAAIILQQWLDE 136
>gi|291563945|emb|CBL42761.1| conserved hypothetical protein TIGR00250 [butyrate-producing
bacterium SS3/4]
Length = 144
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 66/138 (47%), Gaps = 5/138 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRK-KNTIDLMAEDFRSLISEFNLEGFIVG 81
R LGLD G K VG+++SD A + + RK +N + LI+E+ + ++G
Sbjct: 2 RILGLDFGSKTVGVAVSDGLLLTAQGVETIERKDENKLRKTCARIEELIAEYEVTEIVLG 61
Query: 82 YPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
P N + V+ K F + L ++ + YW+E T+ E +L +
Sbjct: 62 LPKNMDNTEGERVEKTKAFGEML---ERRTGLPVHYWDERLTTVAAEQILMESGVRRENR 118
Query: 141 KTILDKFAAVGILQEYLD 158
K ++DK AA ILQ YLD
Sbjct: 119 KAVIDKVAAGLILQGYLD 136
>gi|322374034|ref|ZP_08048568.1| putative Holliday junction resolvase [Streptococcus sp. C150]
gi|321277000|gb|EFX54071.1| putative Holliday junction resolvase [Streptococcus sp. C150]
Length = 139
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 73/142 (51%), Gaps = 13/142 (9%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDF-----RSLISEFNLEG 77
R +GLDVG K VG++ISDP A + ++ ID AE+F L+ E+ ++
Sbjct: 2 RVMGLDVGSKTVGVAISDPLGFTAQGVEII-----KIDEEAEEFGFDRLGELVKEYKVDK 56
Query: 78 FIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLH 136
F+VG P N N + +V+ + K++ + Y +E T+ E +L+ D+
Sbjct: 57 FVVGLPKN--MNNTEGPRVEASKAYGNKIKEIFGIPVDYQDERLTTVQAERMLVEQADVS 114
Query: 137 PVEYKTILDKFAAVGILQEYLD 158
+ K ++DK AA ILQ YLD
Sbjct: 115 RGKRKKVIDKLAAQLILQNYLD 136
>gi|15675863|ref|NP_270037.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
SF370]
gi|71911609|ref|YP_283159.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS5005]
gi|32130060|sp|Q99XP4.1|RUVX_STRP1 RecName: Full=Putative Holliday junction resolvase
gi|13623097|gb|AAK34758.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
gi|71854391|gb|AAZ52414.1| endonuclease involved in recombination [Streptococcus pyogenes
MGAS5005]
Length = 139
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ + + L+ ++ +E F++G
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQYQVEQFVIGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTS-KGVELLLNPLDLHPVEYK 141
P N N + +V I + + L + Y +E T+ + +L+ D+ + K
Sbjct: 62 PKN--MNNTNGPRVDASITYGNHIEHLFGLPVHYQDERLTTVEAKRMLIEQADISRGKRK 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YL+
Sbjct: 120 KVIDKLAAQLILQNYLN 136
>gi|210610063|ref|ZP_03288242.1| hypothetical protein CLONEX_00428 [Clostridium nexile DSM 1787]
gi|210152674|gb|EEA83680.1| hypothetical protein CLONEX_00428 [Clostridium nexile DSM 1787]
Length = 143
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 3/138 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRK-KNTIDLMAEDFRSLISEFNLEGFIVG 81
R +GLD G K VG++ISDP A + + RK +N + L+ E+ ++ ++G
Sbjct: 2 RVMGLDYGSKTVGVAISDPLGITAQGIETIHRKAENKLRQTLARIEELVKEYEVDKLVLG 61
Query: 82 YPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
+P + D + L + + ++ + W+E T+ E L + + K
Sbjct: 62 FPKHMNNTIGDRAEKSLELK--AMLERRTGLPVIMWDERLTTLEAERTLIESKVRREDRK 119
Query: 142 TILDKFAAVGILQEYLDN 159
+DK AAV ILQ YLD+
Sbjct: 120 KYVDKIAAVFILQGYLDS 137
>gi|408356433|ref|YP_006844964.1| Holliday junction resolvase [Amphibacillus xylanus NBRC 15112]
gi|407727204|dbj|BAM47202.1| putative Holliday junction resolvase [Amphibacillus xylanus NBRC
15112]
Length = 138
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 4/138 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K +G++ISD A L+ L +N + ++ISE+ + ++G
Sbjct: 2 RVMGLDVGSKTIGVAISDAFGWTAQGLTTLKWNENDFTTANQSIAAIISEYEVSEIVIGL 61
Query: 83 PFNRQQNAADAVQV-KLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P + + ++ + + + L+ K+ K W+E ++ E +L D+ + +
Sbjct: 62 PKHMNGTIGERGEISQKYAEYLTDKFKV---KTILWDERLSTMAAERVLLEADVSRDKRR 118
Query: 142 TILDKFAAVGILQEYLDN 159
++DK AAV ILQ YL+
Sbjct: 119 KVIDKMAAVMILQGYLNG 136
>gi|401682845|ref|ZP_10814735.1| RNAse H domain protein, YqgF family [Streptococcus sp. AS14]
gi|400184085|gb|EJO18332.1| RNAse H domain protein, YqgF family [Streptococcus sp. AS14]
Length = 136
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 3/135 (2%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLDVG K VG++ISDP A L ++ + + E L+ E+ ++ F++G P
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIGLPK 60
Query: 85 NRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYKTI 143
N + V+ +L + Y +E T+ E +L+ D+ + K +
Sbjct: 61 NMNNTSGPRVEASQAYG--QRVSELFGLPVDYQDERLTTVAAERMLVEQADISRSKRKKV 118
Query: 144 LDKFAAVGILQEYLD 158
+DK AA ILQ YLD
Sbjct: 119 IDKLAAQLILQNYLD 133
>gi|306826005|ref|ZP_07459341.1| crossover junction endodeoxyribonuclease [Streptococcus sp. oral
taxon 071 str. 73H25AP]
gi|306828767|ref|ZP_07461959.1| crossover junction endodeoxyribonuclease [Streptococcus mitis ATCC
6249]
gi|315612311|ref|ZP_07887225.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
ATCC 49296]
gi|331267155|ref|YP_004326785.1| Holliday junction resolvase-like protein,putative ribonuclease
[Streptococcus oralis Uo5]
gi|421489335|ref|ZP_15936717.1| RNAse H domain protein, YqgF family [Streptococcus oralis SK304]
gi|304428945|gb|EFM32033.1| crossover junction endodeoxyribonuclease [Streptococcus mitis ATCC
6249]
gi|304431721|gb|EFM34701.1| crossover junction endodeoxyribonuclease [Streptococcus sp. oral
taxon 071 str. 73H25AP]
gi|315315704|gb|EFU63742.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
ATCC 49296]
gi|326683827|emb|CBZ01445.1| Holliday junction resolvase-like protein,putative ribonuclease
[Streptococcus oralis Uo5]
gi|400365967|gb|EJP19009.1| RNAse H domain protein, YqgF family [Streptococcus oralis SK304]
Length = 136
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 9/138 (6%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLDVG K VG++ISDP A L ++ ++ + + L+ + +E F+VG P
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGQFGFDRIKELVDSYKVERFVVGLPK 60
Query: 85 NRQQNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTSKGVE-LLLNPLDLHPVEY 140
N + V+ + KLE+ + Y +E T+ E +L+ D+ +
Sbjct: 61 NMNNTSGPRVEAS-----QAYGAKLEELFGLPVDYQDERLTTVAAERMLIEQADISRNKR 115
Query: 141 KTILDKFAAVGILQEYLD 158
K ++DK AA ILQ YLD
Sbjct: 116 KKVIDKLAAQLILQNYLD 133
>gi|197303729|ref|ZP_03168766.1| hypothetical protein RUMLAC_02458 [Ruminococcus lactaris ATCC
29176]
gi|197297249|gb|EDY31812.1| RNAse H domain protein, YqgF family [Ruminococcus lactaris ATCC
29176]
Length = 148
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKK-NTIDLMAEDFRSLISEFNLEGFIVG 81
R +GLD G K VG++ISD A + + RK+ N + LI E+ +E ++G
Sbjct: 2 RIMGLDYGTKTVGVAISDALKITAQGIETIQRKEENKLRKTCARIEQLIKEYEVEKIVLG 61
Query: 82 YPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
+P + + + + L + ++ ++ W+E T+ E L + K
Sbjct: 62 FPKHMNNDVGERAEKSLEFKAM--LERRTGLEVVMWDERLTTVAAERTLIESSVRRENRK 119
Query: 142 TILDKFAAVGILQEYLD 158
+DK AAV ILQ YLD
Sbjct: 120 QYVDKIAAVFILQGYLD 136
>gi|398307296|ref|ZP_10510882.1| Holliday junction resolvase-like protein [Bacillus vallismortis
DV1-F-3]
Length = 138
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 8/142 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD+G K +G+++SD A + + + D LI E+ ++ ++G+
Sbjct: 2 RILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLSRLSDLIQEYTIDKIVLGF 61
Query: 83 PFNRQQNAA---DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
P N +A Q F L T ++ W+E T+ E +L D+ +
Sbjct: 62 PKNMNGTVGPRGEASQT--FAKILETTY---NVPVVLWDERLTTMAAEKMLIAADVSRQK 116
Query: 140 YKTILDKFAAVGILQEYLDNAN 161
K ++DK AAV ILQ YLD+ N
Sbjct: 117 RKKVIDKMAAVMILQGYLDSLN 138
>gi|433631672|ref|YP_007265300.1| Holliday junction resolvase-like protein [Mycobacterium canettii
CIPT 140070010]
gi|432163265|emb|CCK60673.1| Holliday junction resolvase-like protein [Mycobacterium canettii
CIPT 140070010]
Length = 170
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 71/143 (49%), Gaps = 11/143 (7%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV 80
RGR LG+DVG +G++ SDP +A+P+ + R ++ L +L +E + IV
Sbjct: 21 RGRRLGIDVGAARIGVASSDPDAILATPVETVRRDRSGKHL--RRLAALAAELEVVEVIV 78
Query: 81 GYP---FNR-QQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH 136
G P +R ++A DA+++ + +++ +E T+ + L +
Sbjct: 79 GLPRTLADRIGRSAQDAIELAEAL-----ARRVSPTPVRLADERLTTVSAQRSLRQAGVR 133
Query: 137 PVEYKTILDKFAAVGILQEYLDN 159
E + ++D+ AAV ILQ +LD
Sbjct: 134 ASEQRAVIDQAAAVAILQSWLDE 156
>gi|289547922|ref|YP_003472910.1| Holliday junction resolvase YqgF [Thermocrinis albus DSM 14484]
gi|289181539|gb|ADC88783.1| Holliday junction resolvase YqgF [Thermocrinis albus DSM 14484]
Length = 133
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 72/138 (52%), Gaps = 8/138 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R L +D G K +GL++ D K+A+PL + + ++ +AE L+ E+++ +VG
Sbjct: 2 RVLCIDWGTKSLGLALGDTNLKLATPLKPIPNRGKVLERIAE----LVKEYDVRLVVVGL 57
Query: 83 PFNRQ-QNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P + A QV+ F+++LSA E + W+E +T+ LL V K
Sbjct: 58 PLTPSGREGQRASQVRSFVEELSALLP-EHVGVELWDERYTTYEAVQLLEGKSRKKV--K 114
Query: 142 TILDKFAAVGILQEYLDN 159
+ D +A+ ILQEYLD+
Sbjct: 115 ELKDSVSALIILQEYLDS 132
>gi|222151503|ref|YP_002560659.1| hypothetical protein MCCL_1256 [Macrococcus caseolyticus JCSC5402]
gi|222120628|dbj|BAH17963.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 139
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 5/139 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
+ +GLDVG K +G+++SD A L+ L + D E + +I N+ ++G
Sbjct: 3 KSIGLDVGSKTIGVALSDAMGWTAQGLTTLRIDEANEDYGIEALKEIIETNNVTTAVIGL 62
Query: 83 PFNRQQNAADAVQVKLFIDDL--SATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
P N + + L ++ SA +L+ W+E ++ G E L D+ +
Sbjct: 63 PKNMNNTIGPSGEASLHFSEILKSACPELD---IIMWDERLSTVGAERSLLEADVSRKKR 119
Query: 141 KTILDKFAAVGILQEYLDN 159
K ++DK AAV ILQ YL++
Sbjct: 120 KQVIDKMAAVFILQGYLNS 138
>gi|254460515|ref|ZP_05073931.1| conserved hypothetical protein TIGR00250 [Rhodobacterales bacterium
HTCC2083]
gi|206677104|gb|EDZ41591.1| conserved hypothetical protein TIGR00250 [Rhodobacteraceae
bacterium HTCC2083]
Length = 160
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 6/135 (4%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLD+G K +G+S+SD +ASPL + R K T D A +I + G ++G PF
Sbjct: 20 VGLDLGTKTIGVSVSDGLLSVASPLETIKRTKYTAD--AARLEQIIEARYIGGIVLGLPF 77
Query: 85 NRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143
N + Q + F +L+ + ++ YW+E ++ E L D +
Sbjct: 78 NMDGSEGPRCQSTRAFARNLA---RQSELPITYWDERLSTVAAERALLAADASRRRRAEV 134
Query: 144 LDKFAAVGILQEYLD 158
+D AA ILQ LD
Sbjct: 135 IDNVAAAYILQGALD 149
>gi|392529657|ref|ZP_10276794.1| Holliday junction resolvase-like protein [Carnobacterium
maltaromaticum ATCC 35586]
Length = 140
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 67/137 (48%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG + VG++ISDP A + + ++ + L+ E+ + F+VG
Sbjct: 2 RTMGLDVGSRTVGIAISDPFGWTAQGIETIRINEDEENYGISRVMELVQEYEVSKFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + + + +L KK D+ + +E T+ E +L+ + + K
Sbjct: 62 PKNMDNSIGPRAEASMRYAEL--LKKQIDLPVIFQDERLTTVQAERMLIEQANTSREKRK 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AAV ILQ YLD
Sbjct: 120 KVIDKVAAVMILQNYLD 136
>gi|357057602|ref|ZP_09118460.1| hypothetical protein HMPREF9334_00177 [Selenomonas infelix ATCC
43532]
gi|355374850|gb|EHG22141.1| hypothetical protein HMPREF9334_00177 [Selenomonas infelix ATCC
43532]
Length = 141
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 75/146 (51%), Gaps = 8/146 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R+L LD+GD +G+++SD A + + R + + DL + L+ E+ GF+ G
Sbjct: 3 RYLSLDIGDATIGIAVSDLLGLTAQGVETIRRTELSADL--DRLAQLVQEYEPTGFVAGL 60
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P + + + V+ F+ +++ ++ + YW+E ++ L D+ + +
Sbjct: 61 PRHMNGDEGERCDIVRAFMAEVA--ERFPSVAIHYWDERLSTVAAARALIAADVSRKKRR 118
Query: 142 TILDKFAAVGILQEYLDNANRKVNLK 167
++DK AAV ILQ +LD R+ +LK
Sbjct: 119 KVIDKMAAVYILQGFLD---RQQHLK 141
>gi|313891828|ref|ZP_07825433.1| RNAse H domain protein, YqgF family [Dialister microaerophilus UPII
345-E]
gi|329121066|ref|ZP_08249697.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Dialister micraerophilus DSM 19965]
gi|313119822|gb|EFR43009.1| RNAse H domain protein, YqgF family [Dialister microaerophilus UPII
345-E]
gi|327471228|gb|EGF16682.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Dialister micraerophilus DSM 19965]
Length = 145
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 9/138 (6%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R + LDVG +G++ISD A L + D E +++I ++++ +VG
Sbjct: 2 RIMALDVGSHTIGVAISDLMGWTAQGLETIRHSTREKDF--ERLKTIIDSYDVKEIVVGM 59
Query: 83 PFNRQQNAADAVQVKL---FIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
P N N ++ +L F+ DL + ++ A+W+E T+ + L D+ +
Sbjct: 60 PLN--MNGTKGIRAELTEDFVKDLKSA--FPNIPCAFWDERLTTVMAQKTLISADMSRKK 115
Query: 140 YKTILDKFAAVGILQEYL 157
K ++DK AA IL+ YL
Sbjct: 116 RKKVIDKLAATVILEGYL 133
>gi|379706190|ref|YP_005204649.1| RNAse H-fold protein YqgF [Streptococcus infantarius subsp.
infantarius CJ18]
gi|374682889|gb|AEZ63178.1| RNAse H-fold protein YqgF [Streptococcus infantarius subsp.
infantarius CJ18]
Length = 136
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 70/136 (51%), Gaps = 5/136 (3%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLDVG K VG++ISDP A + ++ + + E L+ ++ ++ F+VG P
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGVEIIKIDEEAGEFGFERLGELVKQYKVDKFVVGLPK 60
Query: 85 NRQQNAADAVQV-KLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYKT 142
N V+ K + D + K+L ++ Y +E T+ E +L+ D+ + K
Sbjct: 61 NMNNTEGPRVEASKAYGDQI---KELFNIPVDYQDERLTTVQAERMLVEQADVSRGKRKK 117
Query: 143 ILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 118 VIDKLAAQLILQNYLD 133
>gi|118470819|ref|YP_887343.1| Holliday junction resolvase-like protein [Mycobacterium smegmatis
str. MC2 155]
gi|399987361|ref|YP_006567710.1| Holliday junction resolvase YqgF [Mycobacterium smegmatis str. MC2
155]
gi|441208165|ref|ZP_20973891.1| putative Holliday junction resolvase [Mycobacterium smegmatis MKD8]
gi|226731631|sp|A0QWQ5.1|RUVX_MYCS2 RecName: Full=Putative Holliday junction resolvase
gi|118172106|gb|ABK73002.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2
155]
gi|399231922|gb|AFP39415.1| Holliday junction resolvase YqgF [Mycobacterium smegmatis str. MC2
155]
gi|440627639|gb|ELQ89447.1| putative Holliday junction resolvase [Mycobacterium smegmatis MKD8]
Length = 170
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 67/144 (46%), Gaps = 10/144 (6%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLR-KKNTIDLMAEDFRSLISEFNLEGFI 79
RGR +G+DVG +G++ SDP +A+P+ + R K++ +L+ E+ I
Sbjct: 18 RGRRIGIDVGTVRIGVASSDPDGILATPVETVARDKRDKTGKHVRRLAALVKEYEAVEVI 77
Query: 80 VGYPFN----RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDL 135
VG P +A DAV V + +++ +E T+ + L +
Sbjct: 78 VGLPRTLGDRASASAHDAVDVAEQL-----ARRIAPTPVRLADERLTTVSAQRSLREAGV 132
Query: 136 HPVEYKTILDKFAAVGILQEYLDN 159
K ++D+ AAVGILQ +LD
Sbjct: 133 RARGQKAVIDQVAAVGILQGWLDQ 156
>gi|428216929|ref|YP_007101394.1| holliday junction resolvase [Pseudanabaena sp. PCC 7367]
gi|427988711|gb|AFY68966.1| Holliday junction resolvase [Pseudanabaena sp. PCC 7367]
Length = 142
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 6/136 (4%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
LGLDVG K +G++ D IA L+ ++RK D+ + ++ + ++ +VG P+
Sbjct: 6 LGLDVGKKRIGVAGCDRTGLIAHGLTTIVRKNWQADM--SQLQQIVDQRTIDTLVVGLPY 63
Query: 85 NRQQN-AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143
N + A QV+ F A K L +K Y +E TS E ++ + P K +
Sbjct: 64 NMDGSIGPQAKQVQKFAR--GAAKHL-GLKLEYMDERLTSFTAEQMMQTSGISPRLNKAM 120
Query: 144 LDKFAAVGILQEYLDN 159
+D+ AA ILQ++L+
Sbjct: 121 VDRKAAALILQQWLEQ 136
>gi|385674844|ref|ZP_10048772.1| Holliday junction resolvase-like protein [Amycolatopsis sp. ATCC
39116]
Length = 163
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 4/138 (2%)
Query: 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 81
GR L +DVG VG+++SDP +ASPL L R N+ D E +L++E + IVG
Sbjct: 17 GRRLAVDVGSVRVGVALSDPAPILASPLVTLSRDANS-DSDLEQLAALVAEHEVVEVIVG 75
Query: 82 YPFNRQQNAADAVQVKL-FIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
P A ++ + D L+ ++ + +E T+ +L+ + +
Sbjct: 76 LPRTLADRHGPAAEIAAGYADALAG--RIAPVPVRLADERLTTVTASRMLSQRGVKGRKQ 133
Query: 141 KTILDKFAAVGILQEYLD 158
+ ++D+ AAV ILQ +LD
Sbjct: 134 RAVVDQAAAVEILQAWLD 151
>gi|167770376|ref|ZP_02442429.1| hypothetical protein ANACOL_01719 [Anaerotruncus colihominis DSM
17241]
gi|167667383|gb|EDS11513.1| RNAse H domain protein, YqgF family [Anaerotruncus colihominis DSM
17241]
Length = 142
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 18/143 (12%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLI-------SEFNL 75
+ L +D GD GL+ D +ASP+ VL K DF S++ SE+++
Sbjct: 2 KILAVDFGDARTGLACCDRTEYLASPIGVLHDK---------DFGSVLQKVAAAASEYDV 52
Query: 76 EGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDL 135
+ IVG+P N N + + +L D KL + W+E T+ LN +
Sbjct: 53 QEIIVGHPIN--MNGTEGPRAQLCADFAGQLAKLVTVPVRLWDERGTTVSATGFLNATNT 110
Query: 136 HPVEYKTILDKFAAVGILQEYLD 158
+ K ++D+ AA IL+ YL+
Sbjct: 111 RGKKRKEVIDEVAATIILESYLN 133
>gi|159043613|ref|YP_001532407.1| Holliday junction resolvase-like protein [Dinoroseobacter shibae
DFL 12]
gi|157911373|gb|ABV92806.1| holliday junction resolvase YqgF [Dinoroseobacter shibae DFL 12]
Length = 163
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 69/146 (47%), Gaps = 7/146 (4%)
Query: 16 RKVSKRGR-FLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFN 74
R V GR +GLD+G +G+++SD +A+PL + RKK +D A +L+ +
Sbjct: 12 RAVVPAGRALMGLDLGTATIGVAVSDLMWSVATPLETVKRKKFGLD--AARLEALMDARD 69
Query: 75 LEGFIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPL 133
+ G I+G P N + Q + F + +A + + A+W+E ++ E L
Sbjct: 70 VGGLILGLPRNMDGSEGPRAQSTRAFARNFTARRPI---PIAFWDERLSTVAAERALLEA 126
Query: 134 DLHPVEYKTILDKFAAVGILQEYLDN 159
D ++D AA ILQ LD
Sbjct: 127 DTSRARRAEVIDHVAASYILQGALDR 152
>gi|15894957|ref|NP_348306.1| Holliday junction resolvase-like protein [Clostridium
acetobutylicum ATCC 824]
gi|32130056|sp|Q97IG1.1|RUVX_CLOAB RecName: Full=Putative Holliday junction resolvase
gi|15024643|gb|AAK79646.1|AE007678_2 Predicted endonuclease involved in recombination [Clostridium
acetobutylicum ATCC 824]
Length = 135
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 68/137 (49%), Gaps = 4/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LG+DVG+K +G+++SDP A ++ + RK D+ ++ + L ++ ++ + G
Sbjct: 2 RILGIDVGNKTIGVALSDPLGFTAQGITTIRRKNEEEDI--KELKELCEKYEVDTIVCGL 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N N Q + + K+ ++ W+E T+ + DL + K
Sbjct: 60 PKN--MNGTIGFQSEKVLGFCEVIKQNINVPIKMWDERLTTVTANRAMLEADLSRKKRKK 117
Query: 143 ILDKFAAVGILQEYLDN 159
++DK AA ILQ YL++
Sbjct: 118 LVDKVAATYILQGYLNS 134
>gi|281490614|ref|YP_003352594.1| YqgF family resolvase [Lactococcus lactis subsp. lactis KF147]
gi|161702205|gb|ABX75666.1| Resolvase, YqgF family [Lactococcus lactis subsp. lactis KF147]
Length = 143
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 65/136 (47%), Gaps = 2/136 (1%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K VG+S+SD A P+ + +L E LI E+ E ++G
Sbjct: 4 RILGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFERLGVLIKEYKPEKVVLGL 63
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P + N + V+ + D + ++ AY +E T+ E +L + + K
Sbjct: 64 P--KHMNGDEGVRAEASRDYGTKLANEFGLEVAYQDERLTTAQAEKVLIDGGVRRKDRKK 121
Query: 143 ILDKFAAVGILQEYLD 158
+DK AAV ILQ YLD
Sbjct: 122 SIDKLAAVLILQNYLD 137
>gi|159037444|ref|YP_001536697.1| Holliday junction resolvase YqgF [Salinispora arenicola CNS-205]
gi|157916279|gb|ABV97706.1| Holliday junction resolvase YqgF [Salinispora arenicola CNS-205]
Length = 153
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 73/151 (48%), Gaps = 7/151 (4%)
Query: 20 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTI-DLMAED---FRSLISEFNL 75
RG LG+DVG VG++ SDP +A+PL L R ++ D + D +L++E
Sbjct: 5 SRGVRLGVDVGQVRVGVARSDPHGVLATPLVTLARDRDAAPDAVPSDIAELAALVAEHEA 64
Query: 76 EGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLD 134
+VG P N ++ AVQV+ ++ L + + + +E ++ L
Sbjct: 65 VEVVVGLPVNLAGRHGPAAVQVQEYVGRL--VEVISPVPVTLADERMSTVVASRRLAERG 122
Query: 135 LHPVEYKTILDKFAAVGILQEYLDNANRKVN 165
+ + ++D+ AAV ILQ +LD R++
Sbjct: 123 VRGRRQRAVVDQAAAVEILQSWLDAQRRRMG 153
>gi|110679064|ref|YP_682071.1| Holliday junction resolvase-like protein [Roseobacter denitrificans
OCh 114]
gi|118597221|sp|Q169F8.1|RUVX_ROSDO RecName: Full=Putative Holliday junction resolvase
gi|109455180|gb|ABG31385.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
Length = 163
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 4/136 (2%)
Query: 24 FLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYP 83
+GLD+G + +G+++SD +A+PL + R+K T+D A ++++ L G ++G P
Sbjct: 19 LMGLDLGTQTIGVAVSDTFLSVATPLETVKRRKFTLD--AARLSDIVAQRRLGGLVLGLP 76
Query: 84 FNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
N + Q + F +L + D+ +W+E ++ E L D
Sbjct: 77 RNMDGSEGPRCQSTRAFARNLDKSIG-SDLPITFWDERLSTVAAERALLEADTSRKRRAE 135
Query: 143 ILDKFAAVGILQEYLD 158
++D AA ILQ LD
Sbjct: 136 VIDHVAAAYILQGALD 151
>gi|49475587|ref|YP_033628.1| hypothetical protein BH08220 [Bartonella henselae str. Houston-1]
gi|62900975|sp|Q6G3F1.1|RUVX_BARHE RecName: Full=Putative Holliday junction resolvase
gi|49238394|emb|CAF27621.1| hypothetical protein BH08220 [Bartonella henselae str. Houston-1]
Length = 159
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 72/143 (50%), Gaps = 9/143 (6%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+G K +G+++SD ++P SVL R+K T+D A+ + N+ I+G P N
Sbjct: 21 GLDLGTKTIGIAVSDRGLIFSNPRSVLQRQKFTVD--AQTLIKIFDHENVGVIIIGLPLN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
++ Q + F+ ++ A ++ + +W+E ++ E L +D+ + T +
Sbjct: 79 MNGSSGPRAQATRTFVRNMEA---YTEIPFVFWDERLSTIAAERSLLEMDVSRAKRATRI 135
Query: 145 DKFAAVGILQEYLDNANRKVNLK 167
D AA ILQ L NR NL
Sbjct: 136 DSAAAAFILQGAL---NRIHNLH 155
>gi|354593796|ref|ZP_09011839.1| holliday junction resolvase YqgF [Commensalibacter intestini A911]
gi|353672907|gb|EHD14603.1| holliday junction resolvase YqgF [Commensalibacter intestini A911]
Length = 155
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 72/165 (43%), Gaps = 12/165 (7%)
Query: 1 MKYVKPLRLFEQMLKRKVSKRG-RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTI 59
M + P L +Q+ RG R LG+D G K +GL++SD +ASP + K+ +
Sbjct: 1 MLFATPYELIQQL------PRGYRLLGIDPGKKQIGLALSDVSLMLASPYETV--KRGKV 52
Query: 60 DLMAEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNE 119
A+ + + + L G I G P + A Q D + A + W+E
Sbjct: 53 SAFAQYLQQIAQKEQLGGLICGLPLSLDGQFGPAAQAA--KDWIGAVSQASGFPACLWDE 110
Query: 120 GFTSKGV-ELLLNPLDLHPVEYKTILDKFAAVGILQEYLDNANRK 163
+S V L+ DL + ++DK AA +LQ LD A +
Sbjct: 111 RLSSSAVNRFLIEEADLSRKKRNEVVDKMAASYMLQAALDVAKNQ 155
>gi|325292676|ref|YP_004278540.1| Holliday junction resolvase [Agrobacterium sp. H13-3]
gi|418406830|ref|ZP_12980149.1| Holliday junction resolvase-like protein [Agrobacterium tumefaciens
5A]
gi|325060529|gb|ADY64220.1| putative Holliday junction resolvase [Agrobacterium sp. H13-3]
gi|358007323|gb|EHJ99646.1| Holliday junction resolvase-like protein [Agrobacterium tumefaciens
5A]
Length = 159
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 6/135 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+G K +GL++SD + A+P V+ R K T D AE + + + FI+G P N
Sbjct: 21 GLDLGTKTIGLAMSDLSRRFATPRPVIKRVKFTRD--AEVLLAFAEKEKVSAFIIGLPIN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
+A Q + F+ + L + +W+E ++ E +L +D+ + +
Sbjct: 79 MDGSAGPRAQATRAFVRTMGEKTAL---PFIFWDERLSTVAAERVLLEMDVSRAKRAERI 135
Query: 145 DKFAAVGILQEYLDN 159
D AA ILQ LD
Sbjct: 136 DSAAASFILQGALDR 150
>gi|312898887|ref|ZP_07758275.1| conserved hypothetical protein TIGR00250 [Megasphaera
micronuciformis F0359]
gi|310620049|gb|EFQ03621.1| conserved hypothetical protein TIGR00250 [Megasphaera
micronuciformis F0359]
Length = 138
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 5/137 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K +G++ SD A + L R+ D +A + E + +VG
Sbjct: 2 RILGLDVGSKTIGVACSDALLLTAQAVGTLKRQSRRKDCLA--LADICKEKEVHRIVVGK 59
Query: 83 PFNRQQN-AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P + + +A+ +++ F++ L T + + +W+E T+ + L + + K
Sbjct: 60 PSHMNGDKSANTEKIEQFVEKLKKT--VPQTEIVWWDERLTTVMAQRQLMEAGVRREKRK 117
Query: 142 TILDKFAAVGILQEYLD 158
++D AAV ILQ YLD
Sbjct: 118 AVVDTIAAVFILQNYLD 134
>gi|406670610|ref|ZP_11077855.1| RNAse H-fold protein YqgF [Facklamia hominis CCUG 36813]
gi|405582126|gb|EKB56132.1| RNAse H-fold protein YqgF [Facklamia hominis CCUG 36813]
Length = 144
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 2/140 (1%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG + VG++ISDP A L + + +L + L+ + + ++G
Sbjct: 6 RSMGLDVGSRTVGVAISDPMGWTAQGLETIQIDEEKGELGLDRLLELVDVYQVTTLVIGL 65
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + + + + + ++L + Y +E T+ E +L+ ++ + K
Sbjct: 66 PKNMDNSIGQRAEASMAYGE-AVKQRLPHCQIIYQDERLTTSQAERMLIEEGNVSRKKRK 124
Query: 142 TILDKFAAVGILQEYLDNAN 161
++DK AAV ILQ YLD +
Sbjct: 125 QVIDKLAAVMILQNYLDTPH 144
>gi|402309334|ref|ZP_10828329.1| RNAse H domain protein, YqgF family [Eubacterium sp. AS15]
gi|400372829|gb|EJP25767.1| RNAse H domain protein, YqgF family [Eubacterium sp. AS15]
Length = 142
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 73/138 (52%), Gaps = 9/138 (6%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD+G + +G+++SD A P + +R KN + M + LI E +++ +VG
Sbjct: 3 RILGLDIGKQKIGIAMSDLLGMTAQPKAT-IRSKNLEEQM-QKILDLIKENSIKEVVVGL 60
Query: 83 PFNRQQNAADAVQ---VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
P + N D Q K F++ L K E++K Y +E +TSK L+ + + V+
Sbjct: 61 P--KDINGGDGEQALWTKSFVEKLCL--KNENIKIIYIDERYTSKLALKNLSHMSMKKVK 116
Query: 140 YKTILDKFAAVGILQEYL 157
K ++D AA IL+ YL
Sbjct: 117 DKELIDSLAAASILETYL 134
>gi|392409867|ref|YP_006446474.1| RNAse H-fold protein YqgF [Desulfomonile tiedjei DSM 6799]
gi|390623003|gb|AFM24210.1| RNAse H-fold protein YqgF [Desulfomonile tiedjei DSM 6799]
Length = 143
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 68/137 (49%), Gaps = 4/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD+G K +G+++SD A + + + A+ + + N+ ++G
Sbjct: 2 RILGLDIGSKRIGVALSDELGYTAQGVETVTYTDP--ESAADRIQGIAESRNVTEIVIGI 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P+N N + QV+ D + +K ++ W+E T+ E +L D+ + +
Sbjct: 60 PYN--MNGTEGPQVRNVRDFIERLRKRINVPIHEWDERLTTFAAERVLLEADISRAKRRK 117
Query: 143 ILDKFAAVGILQEYLDN 159
++DK AAV ILQ +LD+
Sbjct: 118 VVDKLAAVLILQGFLDS 134
>gi|239637577|ref|ZP_04678549.1| conserved hypothetical protein [Staphylococcus warneri L37603]
gi|239596795|gb|EEQ79320.1| conserved hypothetical protein [Staphylococcus warneri L37603]
Length = 142
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 69/147 (46%), Gaps = 7/147 (4%)
Query: 13 MLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISE 72
MLK K+ LGLDVG K VG++ISD A L L +N +L E +I +
Sbjct: 1 MLKHKI------LGLDVGSKTVGIAISDLMGWTAQGLDTLRIDENNNELGIEQLVEIIKQ 54
Query: 73 FNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNP 132
+ ++G P N + + L + + L ++ W+E ++ E L
Sbjct: 55 HGVGTVVIGLPKNMNNSIGFRGEASLQYKE-KLQEALPSIEIIMWDERLSTMAAEKSLLE 113
Query: 133 LDLHPVEYKTILDKFAAVGILQEYLDN 159
D+ + K ++DK AAV ILQ YLD+
Sbjct: 114 ADVSRQKRKKVIDKMAAVFILQGYLDS 140
>gi|163746885|ref|ZP_02154242.1| hypothetical protein OIHEL45_15819 [Oceanibulbus indolifex HEL-45]
gi|161379999|gb|EDQ04411.1| hypothetical protein OIHEL45_15819 [Oceanibulbus indolifex HEL-45]
Length = 157
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 6/137 (4%)
Query: 24 FLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYP 83
+GLD+G+K +G+++SD +A+PL + RKK +D A +I++ + G ++G P
Sbjct: 19 LIGLDLGEKTIGVAVSDSFQSVATPLETVRRKKFGLD--AARLAEIIAKRRIGGLVLGLP 76
Query: 84 FNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
N + Q + F + +L + YW+E ++ E L D
Sbjct: 77 RNMDGSEGPRCQSTRAFARNFD---RLTPLPITYWDERLSTVAAERALLEADTTRKRRAE 133
Query: 143 ILDKFAAVGILQEYLDN 159
++D AA ILQ LD
Sbjct: 134 VIDHVAAGYILQGLLDR 150
>gi|255261332|ref|ZP_05340674.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
gi|255103667|gb|EET46341.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
Length = 158
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 9/146 (6%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+G +G+++SD +A+PL + RKK ++D A + + L G ++G P+N
Sbjct: 21 GLDLGTVTIGVAVSDRFLSVATPLETIRRKKFSLD--AARLLEIAKDRELGGLVLGLPYN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
+ Q + F +L +KL D+ ++W+E ++ E L D ++
Sbjct: 79 MDGSEGPRCQSTRAFARNL---EKLTDLPISFWDERLSTVAAERALLEADTTRKRRAEVI 135
Query: 145 DKFAAVGILQEYLDNANRKVNLKANV 170
D AA ILQ LD R +L+A+
Sbjct: 136 DHVAAGYILQGVLD---RFAHLRAST 158
>gi|340756776|ref|ZP_08693381.1| Holliday junction resolvase [Fusobacterium varium ATCC 27725]
gi|251834043|gb|EES62606.1| Holliday junction resolvase [Fusobacterium varium ATCC 27725]
Length = 139
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 74/139 (53%), Gaps = 7/139 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
+++ LDVGD +G++ SD +A+PL V+ RKK + + L ++ N + +VG
Sbjct: 4 KYISLDVGDVRIGVAKSDIMGIVATPLEVIDRKKTK---AVKRIKELCTQENTKALVVGI 60
Query: 83 PFNRQ-QNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH-PVEY 140
P + A +V+ FI L+ K++E ++ +E T+ + +LN + +E
Sbjct: 61 PKSLDGTEKRQAEKVREFIAKLN--KEIEGLEIIEVDERLTTVSADRMLNESNKKGALEK 118
Query: 141 KTILDKFAAVGILQEYLDN 159
+ ++DK AA ILQ +LD
Sbjct: 119 RKVVDKIAAAIILQTFLDT 137
>gi|56421089|ref|YP_148407.1| hypothetical protein GK2554 [Geobacillus kaustophilus HTA426]
gi|261418430|ref|YP_003252112.1| Holliday junction resolvase YqgF [Geobacillus sp. Y412MC61]
gi|297529282|ref|YP_003670557.1| Holliday junction resolvase YqgF [Geobacillus sp. C56-T3]
gi|319767610|ref|YP_004133111.1| Holliday junction resolvase YqgF [Geobacillus sp. Y412MC52]
gi|375009647|ref|YP_004983280.1| holliday junction resolvase [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|448238832|ref|YP_007402890.1| Holliday junction resolvase-like protein [Geobacillus sp. GHH01]
gi|62900906|sp|Q5KWU7.1|RUVX_GEOKA RecName: Full=Putative Holliday junction resolvase
gi|56380931|dbj|BAD76839.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
gi|261374887|gb|ACX77630.1| Holliday junction resolvase YqgF [Geobacillus sp. Y412MC61]
gi|297252534|gb|ADI25980.1| Holliday junction resolvase YqgF [Geobacillus sp. C56-T3]
gi|317112476|gb|ADU94968.1| Holliday junction resolvase YqgF [Geobacillus sp. Y412MC52]
gi|359288496|gb|AEV20180.1| Holliday junction resolvase [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|445207674|gb|AGE23139.1| Holliday junction resolvase-like protein [Geobacillus sp. GHH01]
Length = 138
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 4/138 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD+G K +G+++SD A L + D + R++I E+ ++ +VG+
Sbjct: 2 RTLGLDLGTKTLGVAVSDELGLTAQGLETIAIDTERGDYGLKRLRAIIDEYGVDTIVVGW 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLE-DMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + + +A + E + W+E ++ E +L D+ + +
Sbjct: 62 PKNMNGTLGPRAEAS---ERFAAKLREEFSLPVVLWDERLSTMAAERMLIAADVSRKKRR 118
Query: 142 TILDKFAAVGILQEYLDN 159
++DK AA ILQ YLD+
Sbjct: 119 KVIDKMAAAVILQSYLDS 136
>gi|169824325|ref|YP_001691936.1| putative endonuclease involved in recombination [Finegoldia magna
ATCC 29328]
gi|297588302|ref|ZP_06946945.1| crossover junction endodeoxyribonuclease [Finegoldia magna ATCC
53516]
gi|167831130|dbj|BAG08046.1| putative endonuclease involved in recombination [Finegoldia magna
ATCC 29328]
gi|297573675|gb|EFH92396.1| crossover junction endodeoxyribonuclease [Finegoldia magna ATCC
53516]
Length = 137
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R++GLDVGD+ +G++ISDP A L + RK E +I E + IVG
Sbjct: 3 RYIGLDVGDRTIGVAISDPFLLTAQSLMTIKRKSKI--EDIEIINDIIKEKEVSKIIVGL 60
Query: 83 PFNRQQN-AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N A +VK F+ +L +K D+ Y +E T+ +L ++ + K
Sbjct: 61 PKNMNNTIGPQAKKVKTFVKEL---RKHTDLDIEYVDERLTTVSATRVLIEQNVSRKKRK 117
Query: 142 TILDKFAAVGILQEYLD 158
++D AA ILQ YLD
Sbjct: 118 DVIDSVAATYILQTYLD 134
>gi|238924257|ref|YP_002937773.1| hypothetical protein EUBREC_1895 [Eubacterium rectale ATCC 33656]
gi|259495705|sp|C4ZAY4.1|RUVX_EUBR3 RecName: Full=Putative Holliday junction resolvase
gi|238875932|gb|ACR75639.1| hypothetical protein EUBREC_1895 [Eubacterium rectale ATCC 33656]
Length = 143
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 13/142 (9%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRK-----KNTIDLMAEDFRSLISEFNLEG 77
R LGLD G K VG+++SD A + ++ RK + T+ + E +I+E+ ++
Sbjct: 2 RILGLDFGSKTVGVAVSDELLITAQGVEIVRRKSPSKLRQTLARIEE----IIAEYKVDR 57
Query: 78 FIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH 136
++GYP N + + K F D L+ LE + YW+E T+ + + +
Sbjct: 58 IVLGYPKNMNNTEGERCEKTKEFGDMLARRTGLEVI---YWDERLTTVAADRSMMETGIR 114
Query: 137 PVEYKTILDKFAAVGILQEYLD 158
K +D+ AA+ ILQ YLD
Sbjct: 115 RENRKEFVDEIAAIFILQGYLD 136
>gi|256852221|ref|ZP_05557607.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN]
gi|260661747|ref|ZP_05862658.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
jensenii 115-3-CHN]
gi|297205613|ref|ZP_06923009.1| crossover junction endodeoxyribonuclease [Lactobacillus jensenii
JV-V16]
gi|256615267|gb|EEU20458.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN]
gi|260547494|gb|EEX23473.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
jensenii 115-3-CHN]
gi|297150191|gb|EFH30488.1| crossover junction endodeoxyribonuclease [Lactobacillus jensenii
JV-V16]
Length = 148
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 74/141 (52%), Gaps = 10/141 (7%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K VG++ISD A L + + + + + ++ E+++ GF++G
Sbjct: 2 RLLGLDVGSKTVGVAISDELGLTAQKLETISIDETRHNFGMKAIKKIVREYDVTGFVLGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTS-KGVELLLNPLDLHPV 138
P N + +D V + K+LE+ + AY +E T+ + +L+ ++H
Sbjct: 62 PKN--MDGSDGASVNR---SKNYGKRLEEKFSLPVAYSDERLTTIEADRVLIEEAEIHDR 116
Query: 139 -EYKTILDKFAAVGILQEYLD 158
+ K ++D+ AAV ILQ YLD
Sbjct: 117 KKRKEVIDQMAAVLILQNYLD 137
>gi|226366326|ref|YP_002784109.1| Holliday junction resolvase-like protein [Rhodococcus opacus B4]
gi|254767522|sp|C1B4H5.1|RUVX_RHOOB RecName: Full=Putative Holliday junction resolvase
gi|226244816|dbj|BAH55164.1| putative Holliday junction resolvase [Rhodococcus opacus B4]
Length = 178
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 7/149 (4%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFR---SLISEFNLEG 77
RGR +G+DVG +G++ SDP +A+P+ + R K+ A D R ++ E+
Sbjct: 18 RGRRIGIDVGSVRIGVASSDPDGILATPVETVPRSKDR-GPDAPDIRRIADIVEEYEAVE 76
Query: 78 FIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH 136
IVG P R + A +F L +K++ + +E T+ L +
Sbjct: 77 VIVGLPQTLRGERGKAASIATVFAKRLR--RKVDPIPVRMADERLTTVTAARALRESGVS 134
Query: 137 PVEYKTILDKFAAVGILQEYLDNANRKVN 165
+ ++D+ AAV ILQ +LD +R VN
Sbjct: 135 ARGQRPVIDQAAAVAILQGWLDERSRSVN 163
>gi|89895164|ref|YP_518651.1| Holliday junction resolvase-like protein [Desulfitobacterium
hafniense Y51]
gi|219669581|ref|YP_002460016.1| Holliday junction resolvase-like protein [Desulfitobacterium
hafniense DCB-2]
gi|423073474|ref|ZP_17062213.1| RNAse H domain protein, YqgF family [Desulfitobacterium hafniense
DP7]
gi|146325570|sp|Q24UT5.1|RUVX_DESHY RecName: Full=Putative Holliday junction resolvase
gi|254767513|sp|B8FQB9.1|RUVX_DESHD RecName: Full=Putative Holliday junction resolvase
gi|89334612|dbj|BAE84207.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219539841|gb|ACL21580.1| Holliday junction resolvase YqgF [Desulfitobacterium hafniense
DCB-2]
gi|361855780|gb|EHL07738.1| RNAse H domain protein, YqgF family [Desulfitobacterium hafniense
DP7]
Length = 142
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 70/142 (49%), Gaps = 8/142 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLD G++ +G+++SD A + + R + E+ ++++ ++ ++ ++GY
Sbjct: 2 RIMGLDFGERTIGVAVSDAMLLTAQGVKTIRRSPKEL----EELKTMLQDYEVDHIVLGY 57
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLE-DMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N Q ++ + K E + W+E ++ G + L D+ + K
Sbjct: 58 PKNMNGTLGPRAQA---TEEFAQILKEEFGLPVTLWDERLSTMGAQRSLLEADVSRAKRK 114
Query: 142 TILDKFAAVGILQEYLDNANRK 163
++DK AAV ILQ YLD +K
Sbjct: 115 QVIDKMAAVFILQGYLDYIRQK 136
>gi|260583980|ref|ZP_05851728.1| Holliday junction resolvase [Granulicatella elegans ATCC 700633]
gi|260158606|gb|EEW93674.1| Holliday junction resolvase [Granulicatella elegans ATCC 700633]
Length = 140
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 70/140 (50%), Gaps = 9/140 (6%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A + ++ + + L+ E+ +E ++G
Sbjct: 2 RVMGLDVGSKTVGVAISDPLGWTAQGVETIVINEAASEFGFNRVVELVKEYEVEKIVIGM 61
Query: 83 PFNRQQNA---ADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPV 138
P N A A+A Q S K+LE + + +E T+ E +L+ ++
Sbjct: 62 PKNMNNTAGPRAEASQKY----GRSLEKRLE-IPIVFHDERLTTMQAERMLVEEANVSRK 116
Query: 139 EYKTILDKFAAVGILQEYLD 158
+ K ++DK AAV ILQ YLD
Sbjct: 117 KRKEVIDKLAAVIILQNYLD 136
>gi|291458552|ref|ZP_06597942.1| putative Holliday junction resolvase [Oribacterium sp. oral taxon
078 str. F0262]
gi|291419085|gb|EFE92804.1| putative Holliday junction resolvase [Oribacterium sp. oral taxon
078 str. F0262]
Length = 254
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 75/151 (49%), Gaps = 3/151 (1%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLR-KKNTIDLMAEDFRSLISEFNLEGFIVG 81
R +GLD G K +G++++DP IA PL + R ++ + ++ +L+SE ++E ++G
Sbjct: 2 RIMGLDYGAKTIGVAVTDPSGLIAQPLRTIFREREGKLRRSLQEIAALVSELSVERIVIG 61
Query: 82 YPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + + + L A + L +++ +E T+ +L+ + E K
Sbjct: 62 LPLNMDETEGERAEKAREFAALLAKRVLVPIEWV--DERLTTIAAREILDESGVPREEQK 119
Query: 142 TILDKFAAVGILQEYLDNANRKVNLKANVLR 172
++D+ AA IL+ + R+ +A+ R
Sbjct: 120 RMIDQVAAQLILETWKSRKERRGMRRASFRR 150
>gi|251798321|ref|YP_003013052.1| Holliday junction resolvase YqgF [Paenibacillus sp. JDR-2]
gi|247545947|gb|ACT02966.1| Holliday junction resolvase YqgF [Paenibacillus sp. JDR-2]
Length = 138
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 70/144 (48%), Gaps = 10/144 (6%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKN--TIDLMAEDFRSLISEFNLEGFIV 80
R +GLD GD+ +G+++SD A L + ++++ +D +AE L+ E + +V
Sbjct: 2 RTMGLDYGDRNIGVAVSDAFGWTAQGLETVHKRRDGGEMDRIAE----LVKEHEVTEIVV 57
Query: 81 GYPFNRQQNAADAVQVKL-FIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
G P N ++ + F + L T L W+E T+ E L D+ +
Sbjct: 58 GLPKNMNNTIGPRGEISMAFAEQLQQTLNL---PVHLWDERLTTVSAERTLLEADVSRKK 114
Query: 140 YKTILDKFAAVGILQEYLDNANRK 163
K ++DK AA ILQ YLD+ ++
Sbjct: 115 RKLVIDKMAATLILQNYLDSKTKR 138
>gi|314936268|ref|ZP_07843615.1| putative Holliday junction resolvase [Staphylococcus hominis subsp.
hominis C80]
gi|313654887|gb|EFS18632.1| putative Holliday junction resolvase [Staphylococcus hominis subsp.
hominis C80]
Length = 142
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 1/139 (0%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV 80
R + LGLDVG + VG++ISD A L L + + + S+I + N+ ++
Sbjct: 3 RHKILGLDVGSRTVGIAISDLMGWTAQGLDTLRINEENEEFGIDRLVSIIKDNNVGSVVI 62
Query: 81 GYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
G P N + + L +L + L +++ W+E ++ E L D+ +
Sbjct: 63 GLPKNMNNSIGFRGEASLKYKEL-LQEALPNIEIIMWDERLSTMAAERSLLEADVSRQKR 121
Query: 141 KTILDKFAAVGILQEYLDN 159
K ++DK AAV ILQ YLD+
Sbjct: 122 KKVIDKMAAVFILQGYLDS 140
>gi|421506639|ref|ZP_15953562.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
UR-1]
gi|401823632|gb|EJT22779.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
UR-1]
Length = 137
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 8/140 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K VG++ISD A L + + + L+ +++++ +VG
Sbjct: 2 RILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGQFGFDRISELVKQYDVDKIVVGL 61
Query: 83 PFNRQQNA---ADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
P N +A Q F ++L ++L + W+E ++ E LL D+ +
Sbjct: 62 PKNMNGTIGPRGEACQ--QFAENL---RELLQLDVVMWDERLSTMVAERLLISADVSRKK 116
Query: 140 YKTILDKFAAVGILQEYLDN 159
K ++DK AAV ILQ +LD+
Sbjct: 117 RKQVIDKMAAVVILQGFLDS 136
>gi|296139684|ref|YP_003646927.1| Holliday junction resolvase YqgF [Tsukamurella paurometabola DSM
20162]
gi|296027818|gb|ADG78588.1| Holliday junction resolvase YqgF [Tsukamurella paurometabola DSM
20162]
Length = 161
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 6/144 (4%)
Query: 20 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFI 79
+RGR L LDVG +G+++SDP +A+P+ + ++ DL L++++ +
Sbjct: 8 ERGRRLALDVGKARIGVAVSDPDGILATPVETVKAARDGSDL--RRIAQLVTDYEPVEIV 65
Query: 80 VGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDM---KYAYWNEGFTSKGVELLLNPLDL 135
+G P R A + F L+ D + + +E FT+ + L +
Sbjct: 66 IGLPRTLRGDRGESARMAEGFAARLATVLDATDQPSPRVCFSDERFTTVTAQRALRDNGV 125
Query: 136 HPVEYKTILDKFAAVGILQEYLDN 159
E + ++D+ AAV ILQ +LD
Sbjct: 126 RAKEQRAVIDQAAAVAILQGWLDE 149
>gi|194398342|ref|YP_002036896.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
G54]
gi|226695305|sp|B5E6E1.1|RUVX_STRP4 RecName: Full=Putative Holliday junction resolvase
gi|194358009|gb|ACF56457.1| conserved hypothetical protein [Streptococcus pneumoniae G54]
Length = 139
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 67/140 (47%), Gaps = 9/140 (6%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A ++ + + + L+ + +E F+VG
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGXEIIQINEEQGQFGFDRVKELVDTYKVERFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTSKGVE-LLLNPLDLHPV 138
P N + V+ + KLE+ + Y +E T+ E +L+ D+
Sbjct: 62 PKNMNNTSGPRVEAS-----QAYGAKLEEFFGLPVDYQDERLTTVAAERMLIEQADISRN 116
Query: 139 EYKTILDKFAAVGILQEYLD 158
+ K ++DK AA ILQ YLD
Sbjct: 117 KRKKVIDKLAAQLILQNYLD 136
>gi|423615273|ref|ZP_17591107.1| RNAse H-fold protein YqgF [Bacillus cereus VD115]
gi|401260952|gb|EJR67119.1| RNAse H-fold protein YqgF [Bacillus cereus VD115]
Length = 137
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 8/140 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K VG+++SD A L + + + L+ +++++ +VG
Sbjct: 2 RILGLDVGTKTVGVAMSDEMGWTAQGLETIKINEERGHFGFDRISELVKQYDVDKIVVGL 61
Query: 83 PFNRQQNAA---DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
P N +A Q F ++L ++L + W+E ++ E LL D+ +
Sbjct: 62 PKNMNGTIGPRGEACQ--QFAENL---RELLQLDVVMWDERLSTMAAERLLISADVSRKK 116
Query: 140 YKTILDKFAAVGILQEYLDN 159
K ++DK AAV ILQ +LD+
Sbjct: 117 RKQVIDKMAAVVILQGFLDS 136
>gi|395787769|ref|ZP_10467361.1| RNAse H-fold protein YqgF [Bartonella birtlesii LL-WM9]
gi|395410391|gb|EJF76946.1| RNAse H-fold protein YqgF [Bartonella birtlesii LL-WM9]
Length = 159
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 12/137 (8%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEF---NLEGFIVGY 82
GLD+G K +G++ISD ++P VL RKK ED +LI F N+ I+G
Sbjct: 21 GLDLGTKTIGIAISDMGLIFSNPRPVLQRKK-----FMEDAHTLIKIFDRENVGAIIIGL 75
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N ++ Q + F+ ++ A ++ + +W+E ++ E L +D+ +
Sbjct: 76 PLNMNGSSGPRAQATRTFVSNMRAHT---EIPFIFWDERLSTIAAERFLLAMDVSRTKRA 132
Query: 142 TILDKFAAVGILQEYLD 158
++D AA ILQ L+
Sbjct: 133 KLIDSAAAAFILQGALN 149
>gi|383640959|ref|ZP_09953365.1| putative Holliday junction resolvase [Sphingomonas elodea ATCC
31461]
Length = 153
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 63/141 (44%), Gaps = 11/141 (7%)
Query: 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 81
GR +GLDVG K +G ++ D ASP ++ R K T D A LI+ + G ++G
Sbjct: 17 GRLIGLDVGTKTIGTALCDAGWSFASPAQLIRRSKFTKDKAA--LAELIAAQQVVGMVIG 74
Query: 82 YPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYA--YWNEGFTSKGVELLLNPLDLHPV 138
P N + Q + F + DM W+E +++ VE L D
Sbjct: 75 LPLNLDGTDSPRTQSTRAF------ARNCADMGLPILMWDERWSTVAVERTLIEQDASRA 128
Query: 139 EYKTILDKFAAVGILQEYLDN 159
+ ++DK AA ILQ +D
Sbjct: 129 KRAELIDKMAAAYILQGAIDG 149
>gi|334344220|ref|YP_004552772.1| Holliday junction resolvase [Sphingobium chlorophenolicum L-1]
gi|334100842|gb|AEG48266.1| Holliday junction resolvase [Sphingobium chlorophenolicum L-1]
Length = 156
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 13/151 (8%)
Query: 13 MLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISE 72
+ + + GR +GLDVG K +GL++ D IASP + R K + D +A + + +
Sbjct: 10 LFREALPHGGRLIGLDVGTKTIGLALCDAGWSIASPAHTVSRGKFSKDKIA--LAAFMEQ 67
Query: 73 FNLEGFIVGYPFNRQQNAADAVQV-KLF---IDDLSATKKLEDMKYAYWNEGFTSKGVEL 128
++G ++G P N + + Q + F I DL + +W+E ++++ V
Sbjct: 68 QQVKGVVIGLPLNLDGSESPRSQASRAFGRNIADLG-------LPILFWDERWSTQAVTR 120
Query: 129 LLNPLDLHPVEYKTILDKFAAVGILQEYLDN 159
L D + ++DK AA ILQ +D
Sbjct: 121 TLLEADASRARREELVDKLAASYILQGAIDG 151
>gi|218132863|ref|ZP_03461667.1| hypothetical protein BACPEC_00724 [[Bacteroides] pectinophilus ATCC
43243]
gi|217991736|gb|EEC57740.1| RNAse H domain protein, YqgF family [[Bacteroides] pectinophilus
ATCC 43243]
Length = 139
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 5/140 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNT-IDLMAEDFRSLISEFNLEGFIVG 81
R LGLD G K VG++++DP PL + R ++ I +I E ++E ++G
Sbjct: 2 RILGLDYGTKTVGVAVTDPLGMTVQPLETITRDSDSKIRPTLRRIEEIIKELDVEQIVLG 61
Query: 82 YPFNRQQNAAD-AVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
P N + A + F D L ++ ++ +E T+ E +L + +Y
Sbjct: 62 LPLNMDGTEGERAACSREFGDML---ERRTGLQVVMTDERLTTVEAEEILETCKVARKDY 118
Query: 141 KTILDKFAAVGILQEYLDNA 160
K +D AAV IL++Y+ N
Sbjct: 119 KKYVDSVAAVLILEDYVRNC 138
>gi|441497332|ref|ZP_20979547.1| Putative Holliday junction resolvase [Fulvivirga imtechensis AK7]
gi|441438857|gb|ELR72186.1| Putative Holliday junction resolvase [Fulvivirga imtechensis AK7]
Length = 139
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 70/141 (49%), Gaps = 10/141 (7%)
Query: 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 81
GR +G+D G K G++++DP IASPL+ + K D+ + + ++EGF+VG
Sbjct: 2 GRIVGIDFGLKRTGIAVTDPMKIIASPLTTVATK----DIFPF-LKDYCGKESVEGFVVG 56
Query: 82 YPFNRQ-QNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGV--ELLLNPLDLHPV 138
P N Q Q+ V+ FI +L K+ + +E FTSK ++ +
Sbjct: 57 MPKNLQNQDTHATSSVRKFIANLQ--KQFPGIGVTEVDERFTSKIALDAMIAGGMKKKDR 114
Query: 139 EYKTILDKFAAVGILQEYLDN 159
K +DK +A ILQ YLD
Sbjct: 115 RDKANIDKISATVILQSYLDG 135
>gi|222085624|ref|YP_002544154.1| Holliday junction resolvase-like protein [Agrobacterium radiobacter
K84]
gi|398377965|ref|ZP_10536134.1| RNAse H-fold protein YqgF [Rhizobium sp. AP16]
gi|254767490|sp|B9JDM7.1|RUVX_AGRRK RecName: Full=Putative Holliday junction resolvase
gi|221723072|gb|ACM26228.1| holliday junction resolvase protein [Agrobacterium radiobacter K84]
gi|397725892|gb|EJK86336.1| RNAse H-fold protein YqgF [Rhizobium sp. AP16]
Length = 164
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 6/135 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+G K +GL++SD + A+P V+ R K T D A+ + + + F++G P N
Sbjct: 21 GLDLGTKTIGLAMSDLGRRFATPRPVIKRVKFTQD--AQTLLAFAEKEKVAAFVIGLPMN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
+ VQ + F+ ++ L + YW+E ++ E L +D+ + +
Sbjct: 79 MDGSTGPRVQATRAFVRSMADKTAL---PFVYWDERLSTVAAERALLEMDVSRAKRAERI 135
Query: 145 DKFAAVGILQEYLDN 159
D AA ILQ LD
Sbjct: 136 DSAAASFILQGALDR 150
>gi|337750602|ref|YP_004644764.1| Holliday junction resolvase [Paenibacillus mucilaginosus KNP414]
gi|379723658|ref|YP_005315789.1| Putative Holliday junction resolvase [Paenibacillus mucilaginosus
3016]
gi|386726407|ref|YP_006192733.1| Putative Holliday junction resolvase [Paenibacillus mucilaginosus
K02]
gi|336301791|gb|AEI44894.1| Putative Holliday junction resolvase [Paenibacillus mucilaginosus
KNP414]
gi|378572330|gb|AFC32640.1| Putative Holliday junction resolvase [Paenibacillus mucilaginosus
3016]
gi|384093532|gb|AFH64968.1| Putative Holliday junction resolvase [Paenibacillus mucilaginosus
K02]
Length = 137
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 6/141 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R++GLD GDK +G+++SD A L V+ R D R + ++ + +VG
Sbjct: 2 RYMGLDYGDKTIGVALSDELGWTAQGLEVIRRTTAERDFAR--LREITEQYGVTEIVVGL 59
Query: 83 PFNRQQNAADAVQVKL-FIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N ++ + F L T M W+E T+ L D+ + K
Sbjct: 60 PKNMNNTIGPRGEICIAFSQTLHETL---GMPVHLWDERLTTVSATRTLLEADVSRKKRK 116
Query: 142 TILDKFAAVGILQEYLDNANR 162
++DK AA ILQ Y+D+ +R
Sbjct: 117 QVIDKMAAALILQNYMDSHSR 137
>gi|260433278|ref|ZP_05787249.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
ITI-1157]
gi|260417106|gb|EEX10365.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
ITI-1157]
Length = 154
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 24 FLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYP 83
+GLD+G+K +G+++SD +ASPL + RKK +D + + ++ + G ++G P
Sbjct: 19 LMGLDLGEKTIGVAVSDRMRGVASPLETVRRKKFKLD--SARLLEIATDREIGGIVLGLP 76
Query: 84 FNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
N + Q + F +LS +L D+ +W+E ++ + L D
Sbjct: 77 RNMDGSEGPRCQSTRAFARNLS---QLTDIPIGFWDERLSTVAAKKALLEADTTRKRRGQ 133
Query: 143 ILDKFAAVGILQEYLDN 159
++D AA ILQ LD
Sbjct: 134 VIDHVAAGYILQGALDR 150
>gi|167756782|ref|ZP_02428909.1| hypothetical protein CLORAM_02331 [Clostridium ramosum DSM 1402]
gi|237734500|ref|ZP_04564981.1| conserved hypothetical protein [Mollicutes bacterium D7]
gi|365832501|ref|ZP_09374034.1| RNAse H-fold protein YqgF [Coprobacillus sp. 3_3_56FAA]
gi|374625752|ref|ZP_09698168.1| RNAse H-fold protein YqgF [Coprobacillus sp. 8_2_54BFAA]
gi|167702957|gb|EDS17536.1| RNAse H domain protein, YqgF family [Clostridium ramosum DSM 1402]
gi|229382320|gb|EEO32411.1| conserved hypothetical protein [Coprobacillus sp. D7]
gi|365260446|gb|EHM90403.1| RNAse H-fold protein YqgF [Coprobacillus sp. 3_3_56FAA]
gi|373915412|gb|EHQ47183.1| RNAse H-fold protein YqgF [Coprobacillus sp. 8_2_54BFAA]
Length = 139
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 69/136 (50%), Gaps = 1/136 (0%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD+G + G++ISD +A + + + D A+ +LI+E ++ ++G
Sbjct: 3 RILGLDLGSRTCGIAISDTLGMLAHGIETYRFRDDDYDRAAKHVVALINEHQIKTVVLGL 62
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P + + + Q+ + ++ K++ + +E T+K + L D+ + K
Sbjct: 63 PKHMNGDLGERAQISIMFKEM-LEKEVPGLNVVLIDERLTTKVAQDQLIFADVSRKKRKQ 121
Query: 143 ILDKFAAVGILQEYLD 158
++DK AAV ILQ YLD
Sbjct: 122 VIDKMAAVAILQGYLD 137
>gi|385799738|ref|YP_005836142.1| Holliday junction resolvase YqgF [Halanaerobium praevalens DSM
2228]
gi|309389102|gb|ADO76982.1| Holliday junction resolvase YqgF [Halanaerobium praevalens DSM
2228]
Length = 135
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 73/138 (52%), Gaps = 6/138 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LG+D G+K VG+++SD A PL L K N + + + I ++++E IVG
Sbjct: 2 RILGIDYGNKRVGIAVSDALGWTAQPLVTL--KMNGHQKLLVEIKKYIDKYDVEKIIVGM 59
Query: 83 PFNRQQNAADAVQV-KLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P+N + ++ + FI+ L+ +LE + +E T+K + +L D+ K
Sbjct: 60 PYNLDGSRGKRAEITQAFINFLN--NQLE-IPIQIQDERLTTKQAQNILLEADVSRQGRK 116
Query: 142 TILDKFAAVGILQEYLDN 159
++DK AA ILQ YLD+
Sbjct: 117 KVIDKLAASLILQSYLDS 134
>gi|410727166|ref|ZP_11365388.1| RNAse H-fold protein YqgF [Clostridium sp. Maddingley MBC34-26]
gi|410599196|gb|EKQ53752.1| RNAse H-fold protein YqgF [Clostridium sp. Maddingley MBC34-26]
Length = 137
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 70/142 (49%), Gaps = 8/142 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K +G+++SDP A L+ + R D+ ++ + +++++ ++G
Sbjct: 2 RILGLDVGKKTIGVAVSDPLGFTAQGLTTIRRTNKENDI--KEIKKFCDDYDVKMIVIGL 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYA--YWNEGFTSKGVELLLNPLDLHPVEY 140
P N + ++ + L E++K +W+E T+ + DL +
Sbjct: 60 PKNMNGTIGPSGEIIMAFGKLIE----EELKIEIKFWDERLTTVAAHKAMLEADLSRNKR 115
Query: 141 KTILDKFAAVGILQEYLDNANR 162
K I+DK A+ ILQ YLD +R
Sbjct: 116 KKIVDKVASTYILQGYLDLISR 137
>gi|312880062|ref|ZP_07739862.1| Holliday junction resolvase YqgF [Aminomonas paucivorans DSM 12260]
gi|310783353|gb|EFQ23751.1| Holliday junction resolvase YqgF [Aminomonas paucivorans DSM 12260]
Length = 144
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 70/140 (50%), Gaps = 7/140 (5%)
Query: 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 81
GR L LD+G VG+++SDP + A PL VL ++N I + R L+ + +VG
Sbjct: 4 GRVLALDLGTVRVGVALSDPTRRFAQPLDVLPAQENWI----QRVRELVVTHQVTLVLVG 59
Query: 82 YPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
P A V+ V+ + ++L + + + +++E FT++ + L D+
Sbjct: 60 LPTRTDGTAGPEVERVRGWTEELR--QGIPQVPIQFYDERFTTRIAQQALLAGDVSRKGR 117
Query: 141 KTILDKFAAVGILQEYLDNA 160
K +DK AA +LQ +LD
Sbjct: 118 KQRVDKVAAAVLLQGFLDGG 137
>gi|229019608|ref|ZP_04176421.1| Holliday junction resolvase [Bacillus cereus AH1273]
gi|229025846|ref|ZP_04182244.1| Holliday junction resolvase [Bacillus cereus AH1272]
gi|423389302|ref|ZP_17366528.1| RNAse H-fold protein YqgF [Bacillus cereus BAG1X1-3]
gi|228735457|gb|EEL86054.1| Holliday junction resolvase [Bacillus cereus AH1272]
gi|228741688|gb|EEL91875.1| Holliday junction resolvase [Bacillus cereus AH1273]
gi|401641393|gb|EJS59110.1| RNAse H-fold protein YqgF [Bacillus cereus BAG1X1-3]
Length = 137
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 8/140 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K VG+++SD A L + + + L+ ++ ++ +VG
Sbjct: 2 RILGLDVGTKTVGVAMSDEMGWTAQGLETIKINEERGHFGFDRISELVKQYGVDKIVVGL 61
Query: 83 PFNRQQNAA---DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
P N +A Q F ++L ++L + W+E ++ E LL D+ +
Sbjct: 62 PKNMNGTIGPRGEACQ--QFAENL---RELLQLDVVMWDERLSTMAAERLLISADVSRKK 116
Query: 140 YKTILDKFAAVGILQEYLDN 159
K ++DK AAV ILQ +LD+
Sbjct: 117 RKQVIDKMAAVVILQGFLDS 136
>gi|329889392|ref|ZP_08267735.1| conserved hypothetical UPF0081 family protein [Brevundimonas
diminuta ATCC 11568]
gi|328844693|gb|EGF94257.1| conserved hypothetical UPF0081 family protein [Brevundimonas
diminuta ATCC 11568]
Length = 154
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 69/137 (50%), Gaps = 7/137 (5%)
Query: 24 FLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYP 83
+LGLD+G+ +G+S+SD IASPL ++ + K + D AE ++ + ++G P
Sbjct: 19 WLGLDLGENTIGVSVSDTGRIIASPLELIRKTKFSQD--AEQLFRIMDGRKVSALVIGLP 76
Query: 84 FNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
N Q + F +L ++ + A+ +E ++ VE L++ LDL
Sbjct: 77 LNMDGTEGPRAQSCRAFARNL---ERFRPVNVAFQDERLSTTAVERFLIDELDLTRKRRA 133
Query: 142 TILDKFAAVGILQEYLD 158
++D+ AA ILQ LD
Sbjct: 134 DVVDRTAAAWILQGALD 150
>gi|240145916|ref|ZP_04744517.1| putative holliday junction resolvase [Roseburia intestinalis L1-82]
gi|257201981|gb|EEV00266.1| putative holliday junction resolvase [Roseburia intestinalis L1-82]
gi|291535170|emb|CBL08282.1| conserved hypothetical protein TIGR00250 [Roseburia intestinalis
M50/1]
Length = 144
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 5/138 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKK-NTIDLMAEDFRSLISEFNLEGFIVG 81
R LGLD G K VG+++SD A L ++ R+ N + ++I+E+ +E ++G
Sbjct: 2 RILGLDFGSKTVGVAVSDELLLTAQGLEIIRRQSPNKLRQTLARIEAIIAEYQVECIVLG 61
Query: 82 YPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
YP N + + K F + L LE W+E T+ + + + +
Sbjct: 62 YPKNMNNTEGERCEKTKEFQEMLERRTGLE---VILWDERLTTVSADKHMMESGIRREDR 118
Query: 141 KTILDKFAAVGILQEYLD 158
K +D+ AAV ILQ YLD
Sbjct: 119 KKYVDEIAAVFILQGYLD 136
>gi|385829709|ref|YP_005867522.1| YqgF family resolvase [Lactococcus lactis subsp. lactis CV56]
gi|418038712|ref|ZP_12677034.1| Hydrolase acting on ester bonds [Lactococcus lactis subsp. cremoris
CNCM I-1631]
gi|326405717|gb|ADZ62788.1| YqgF family resolvase [Lactococcus lactis subsp. lactis CV56]
gi|354692977|gb|EHE92770.1| Hydrolase acting on ester bonds [Lactococcus lactis subsp. cremoris
CNCM I-1631]
gi|374672212|dbj|BAL50103.1| putative Hollyday junction resolvase [Lactococcus lactis subsp.
lactis IO-1]
Length = 143
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 2/136 (1%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K VG+S+SD A P+ + +L E LI E+ E ++G
Sbjct: 4 RILGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFERLGVLIKEYKPEKVVLGL 63
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P + N + ++ + D + ++ AY +E T+ E +L + + K
Sbjct: 64 P--KHMNGDEGIRAEASRDYGTKLANEFGLEVAYQDERLTTAQAEKVLIDGGVRRKDRKK 121
Query: 143 ILDKFAAVGILQEYLD 158
+DK AAV ILQ YLD
Sbjct: 122 SIDKLAAVLILQNYLD 137
>gi|376295907|ref|YP_005167137.1| Holliday junction resolvase YqgF [Desulfovibrio desulfuricans
ND132]
gi|323458468|gb|EGB14333.1| Holliday junction resolvase YqgF [Desulfovibrio desulfuricans
ND132]
Length = 138
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 66/139 (47%), Gaps = 6/139 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LG+D G K VGL++SD + SPL L ++ T + ++ +I + +E +VG
Sbjct: 2 RALGIDFGLKRVGLAVSDRTGTLVSPLKTL--ERTTRQALFDELTEIIHDEAIEAVVVGL 59
Query: 83 PFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P ++ Q + F + L + D +E TS E LN L + K
Sbjct: 60 PLALSGEDTLTTRQARNFAESLG---RRIDAPVHLMDERLTSAQAEEELNAAGLRGAKRK 116
Query: 142 TILDKFAAVGILQEYLDNA 160
LD AAV IL+ +LD+A
Sbjct: 117 AALDSQAAVVILRSWLDSA 135
>gi|300865579|ref|ZP_07110357.1| Holliday junction resolvase-like protein [Oscillatoria sp. PCC
6506]
gi|300336413|emb|CBN55507.1| Holliday junction resolvase-like protein [Oscillatoria sp. PCC
6506]
Length = 170
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 6/136 (4%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
LGLD+G K +G++ D IA+ L + R ++ D FR L++E ++ + G P+
Sbjct: 10 LGLDIGQKRIGVAGCDGTGLIATGLGTIAR--SSFDKDVAQFRQLVTERGVQVLVSGLPY 67
Query: 85 NRQQNAA-DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143
N A QV+ + L++ L Y +E TS E L+ + P K +
Sbjct: 68 NMNGTLGFQARQVQKYASRLASALAL---PLEYVDERLTSIQAEQLMLTEKISPSRNKAL 124
Query: 144 LDKFAAVGILQEYLDN 159
+D+ AA ILQ++LD
Sbjct: 125 IDRKAAAIILQQWLDE 140
>gi|118617375|ref|YP_905707.1| Holliday junction resolvase-like protein [Mycobacterium ulcerans
Agy99]
gi|183982184|ref|YP_001850475.1| Holliday junction resolvase-like protein [Mycobacterium marinum M]
gi|167012739|sp|A0PPG7.1|RUVX_MYCUA RecName: Full=Putative Holliday junction resolvase
gi|226731630|sp|B2HNC2.1|RUVX_MYCMM RecName: Full=Putative Holliday junction resolvase
gi|118569485|gb|ABL04236.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
gi|183175510|gb|ACC40620.1| conserved hypothetical protein [Mycobacterium marinum M]
Length = 170
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 5/142 (3%)
Query: 19 SKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGF 78
+ RGR LG+DVG +G++ SDP +A+PL + R+++ L +L+ E
Sbjct: 22 TGRGRRLGIDVGTVRIGVASSDPDGILATPLETVRRERSGKHL--RRLATLVGETEAVEV 79
Query: 79 IVGYPFNRQQNAADAVQVKL-FIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHP 137
IVG P + Q + D+L+A ++ + +E T+ + L +
Sbjct: 80 IVGLPRTLADRIGSSAQDAIDLADELAA--RVAPIPVRLADERLTTVSAQRSLREAGVRA 137
Query: 138 VEYKTILDKFAAVGILQEYLDN 159
+ ++D+ AAV ILQ +LD
Sbjct: 138 KNQRAVIDQAAAVAILQAWLDQ 159
>gi|404422988|ref|ZP_11004656.1| Holliday junction resolvase-like protein [Mycobacterium fortuitum
subsp. fortuitum DSM 46621]
gi|403655407|gb|EJZ10269.1| Holliday junction resolvase-like protein [Mycobacterium fortuitum
subsp. fortuitum DSM 46621]
Length = 172
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 6/142 (4%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFR---SLISEFNLEG 77
RGR +G+DVG +G++ DP +A+P+ + R K D + R LI E+
Sbjct: 20 RGRRIGIDVGTVRIGVATCDPDGILATPVETVQRDKR--DRSGKHLRRLVKLIGEYEAVE 77
Query: 78 FIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHP 137
+VG P A + + + DL A +++ +E T+ + L +
Sbjct: 78 VVVGLPRTLADRAGSSAIDAIELADLLA-RRIAPTPVRLADERLTTVSAQRSLREAGVRA 136
Query: 138 VEYKTILDKFAAVGILQEYLDN 159
K ++D+ AAVGILQ +LD
Sbjct: 137 KGQKAMIDQAAAVGILQSWLDQ 158
>gi|339634214|ref|YP_004725855.1| Holliday junction resolvase-like protein [Weissella koreensis KACC
15510]
gi|420161851|ref|ZP_14668613.1| crossover junction endodeoxyribonuclease [Weissella koreensis KCTC
3621]
gi|338854010|gb|AEJ23176.1| Holliday junction resolvase-like protein [Weissella koreensis KACC
15510]
gi|394744858|gb|EJF33777.1| crossover junction endodeoxyribonuclease [Weissella koreensis KCTC
3621]
Length = 152
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 68/151 (45%), Gaps = 11/151 (7%)
Query: 24 FLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYP 83
GLDVG K VG+++SDP A L ++ ++ + E + L+ + GF++G P
Sbjct: 3 IFGLDVGSKTVGVAVSDPMGWTAQGLEIIRINEDEEEFGIERMKELVLKHKPTGFLLGLP 62
Query: 84 FNRQQNA---ADAVQV--KLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
N + A+A Q KL D +D + T + +L+ D V
Sbjct: 63 KNMNNSIGPRAEAAQAYGKLLEDTFHLPIDFQDERLT------TVEAERMLIEEADTSRV 116
Query: 139 EYKTILDKFAAVGILQEYLDNANRKVNLKAN 169
+ K ++DK AA ILQ YLD VN+
Sbjct: 117 KRKQVIDKLAASLILQNYLDRKGPLVNVSGT 147
>gi|418964344|ref|ZP_13516158.1| RNAse H domain protein, YqgF family [Streptococcus anginosus subsp.
whileyi CCUG 39159]
gi|383341149|gb|EID19417.1| RNAse H domain protein, YqgF family [Streptococcus anginosus subsp.
whileyi CCUG 39159]
Length = 139
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG+++SDP A L ++ + + + L + +E F+VG
Sbjct: 2 RIMGLDVGSKTVGVAVSDPLGFTAQGLEIIPIDEEKGEFGFDRLSELAKGYKVEKFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + V+ + ++L + Y +E T+ E +L+ D+ + K
Sbjct: 62 PKNMNNTSGPRVEASQAYG--AKIEQLFHLPVEYQDERLTTVAAERMLIEQADVSRKKRK 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 120 KVIDKLAAQLILQNYLD 136
>gi|319405723|emb|CBI79346.1| putative resolvase [Bartonella sp. AR 15-3]
Length = 163
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 69/137 (50%), Gaps = 12/137 (8%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLE---GFIVGY 82
LD+G K +G++ISD ++P V+ RKK T+D + +LI FN E IVG
Sbjct: 21 SLDLGTKTIGIAISDISLTFSNPRPVIYRKKFTLDAL-----TLIEIFNNENVGAIIVGL 75
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + VQ K F+ +++ K+ + +W+E ++ E +++ + K
Sbjct: 76 PINMNGSNGPRVQATKTFVSNMATYTKI---PFIFWDERLSTIAAERYFLEMNMSRSKRK 132
Query: 142 TILDKFAAVGILQEYLD 158
+ +D AA ILQ LD
Sbjct: 133 SRIDSAAAAFILQGALD 149
>gi|254294342|ref|YP_003060365.1| Holliday junction resolvase YqgF [Hirschia baltica ATCC 49814]
gi|254042873|gb|ACT59668.1| Holliday junction resolvase YqgF [Hirschia baltica ATCC 49814]
Length = 150
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 7/144 (4%)
Query: 17 KVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLE 76
++ RG LGLD G K +G++ +D IASP+ + + K + F L +
Sbjct: 8 QLPPRGPLLGLDPGTKTIGIAAADGLRMIASPVETIKKGKKLAPALTRLF-ELYDDRVCV 66
Query: 77 GFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLE--DMKYAYWNEGFTSKGVELLLNPLD 134
G ++G P N + VQ + A LE D+ A+W+E ++ VE L D
Sbjct: 67 GLVIGLPVNMDGSHGPRVQAVRAL----ARNILEKRDVPIAFWDERLSTAAVERTLLEAD 122
Query: 135 LHPVEYKTILDKFAAVGILQEYLD 158
+ ++DK AA ILQ +D
Sbjct: 123 TSRAKRAEVIDKMAAAYILQGAID 146
>gi|145594372|ref|YP_001158669.1| Holliday junction resolvase YqgF [Salinispora tropica CNB-440]
gi|145303709|gb|ABP54291.1| Holliday junction resolvase YqgF [Salinispora tropica CNB-440]
Length = 153
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 69/159 (43%), Gaps = 23/159 (14%)
Query: 20 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDL-----MAEDFRSLISEFN 74
RG LG+DVG VG++ SDP +A+PL L R + MAE +L++E
Sbjct: 5 SRGVRLGVDVGQVRVGVARSDPHGVLATPLVTLARDRAVAPEAVPSDMAE-LAALVTEHE 63
Query: 75 LEGFIVGYPFN---RQQNAADAVQVKL-----FIDDLSATKKLEDMKYAYWNEGFTSKGV 126
+VG P N RQ AA VQ + I + T E M + +GV
Sbjct: 64 AVEVVVGLPVNLAGRQGPAAVHVQAYVGRLVEVISPVPVTLADERMSTVVASRRLAERGV 123
Query: 127 ELLLNPLDLHPVEYKTILDKFAAVGILQEYLDNANRKVN 165
+ ++D+ AAV ILQ +LD R++
Sbjct: 124 RGR---------RQRAVVDQAAAVEILQSWLDAQRRRMQ 153
>gi|419529402|ref|ZP_14068937.1| hypothetical protein SPAR62_0173 [Streptococcus pneumoniae GA40028]
gi|379576306|gb|EHZ41234.1| hypothetical protein SPAR62_0173 [Streptococcus pneumoniae GA40028]
Length = 136
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 3/135 (2%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLDVG K VG++ISDP A L ++ + + + L+ + +E F+VG P
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDAYKVERFVVGLPK 60
Query: 85 NRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYKTI 143
N + V+ + ++L + Y +E T+ E +L+ D+ + K +
Sbjct: 61 NMNNTSGPRVEASQVYG--AKLEELFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKV 118
Query: 144 LDKFAAVGILQEYLD 158
+DK AA ILQ YLD
Sbjct: 119 IDKLAAQLILQNYLD 133
>gi|160940886|ref|ZP_02088226.1| hypothetical protein CLOBOL_05778 [Clostridium bolteae ATCC
BAA-613]
gi|158436130|gb|EDP13897.1| hypothetical protein CLOBOL_05778 [Clostridium bolteae ATCC
BAA-613]
Length = 171
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 5/139 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLR-KKNTIDLMAEDFRSLISEFNLEGFIVG 81
R +GLD G K VG+++ DP A + + R +N + LI E+ +E ++G
Sbjct: 32 RIMGLDFGSKTVGVAVCDPLGITAQTVETITRASENKMRQTLARIEQLIGEYEIERIVLG 91
Query: 82 YPFNRQQNAAD-AVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
YP N + + + F +A ++ ++ W+E T+ E +L +
Sbjct: 92 YPKNMNNTVGERGEKTQEF---KAALERRTGLEVILWDERLTTVAAERVLIESGVRRENR 148
Query: 141 KTILDKFAAVGILQEYLDN 159
K +D+ AA ILQ YLD+
Sbjct: 149 KKSVDQIAAAMILQGYLDS 167
>gi|260575164|ref|ZP_05843165.1| Holliday junction resolvase YqgF [Rhodobacter sp. SW2]
gi|259022786|gb|EEW26081.1| Holliday junction resolvase YqgF [Rhodobacter sp. SW2]
Length = 160
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 6/135 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD G+K +G+++SD +A+PL + R K T D A +I+E + G I+G P N
Sbjct: 22 GLDFGEKTIGVAVSDLSRSVATPLLTIRRVKFTDDAAA--LAKIITERQIAGLILGLPRN 79
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
+ Q + F +LS +L + +W+E ++ L D ++
Sbjct: 80 MDGSEGPRAQATRAFARNLS---RLTPLPIGFWDERLSTVAATRALLEADTSRKRRAEVI 136
Query: 145 DKFAAVGILQEYLDN 159
D AA ILQ LD
Sbjct: 137 DHVAAGYILQGVLDR 151
>gi|111658812|ref|ZP_01409443.1| hypothetical protein SpneT_02000110 [Streptococcus pneumoniae
TIGR4]
gi|149017883|ref|ZP_01834342.1| hypothetical protein CGSSp23BS72_11110 [Streptococcus pneumoniae
SP23-BS72]
gi|183603171|ref|ZP_02710544.2| conserved hypothetical protein [Streptococcus pneumoniae
CDC1087-00]
gi|183603568|ref|ZP_02718032.2| conserved hypothetical protein [Streptococcus pneumoniae
CDC3059-06]
gi|221231101|ref|YP_002510253.1| Holliday junction resolvase [Streptococcus pneumoniae ATCC 700669]
gi|298230981|ref|ZP_06964662.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
str. Canada MDR_19F]
gi|298502010|ref|YP_003723950.1| crossover junction endodeoxyribonuclease [Streptococcus pneumoniae
TCH8431/19A]
gi|303265496|ref|ZP_07351396.1| hypothetical protein CGSSpBS457_01582 [Streptococcus pneumoniae
BS457]
gi|303267946|ref|ZP_07353748.1| hypothetical protein CGSSpBS458_10928 [Streptococcus pneumoniae
BS458]
gi|307126416|ref|YP_003878447.1| hypothetical protein SP670_0270 [Streptococcus pneumoniae 670-6B]
gi|387756757|ref|YP_006063736.1| putative Holliday junction resolvase [Streptococcus pneumoniae
OXC141]
gi|387758552|ref|YP_006065530.1| putative Holliday junction resolvase [Streptococcus pneumoniae
INV200]
gi|387787406|ref|YP_006252474.1| hypothetical protein MYY_0277 [Streptococcus pneumoniae ST556]
gi|410475696|ref|YP_006742455.1| Holliday junction resolvase [Streptococcus pneumoniae gamPNI0373]
gi|415696738|ref|ZP_11456380.1| hypothetical protein CGSSp4595_0170 [Streptococcus pneumoniae
459-5]
gi|415748573|ref|ZP_11476625.1| hypothetical protein CGSSpSV35_0360 [Streptococcus pneumoniae SV35]
gi|415751299|ref|ZP_11478534.1| hypothetical protein CGSSpSV36_0142 [Streptococcus pneumoniae SV36]
gi|417311797|ref|ZP_12098514.1| hypothetical protein SPAR5_0192 [Streptococcus pneumoniae GA04375]
gi|417675977|ref|ZP_12325390.1| hypothetical protein SPAR148_0175 [Streptococcus pneumoniae
GA17545]
gi|417678168|ref|ZP_12327569.1| uncharacterized family protein [Streptococcus pneumoniae GA17570]
gi|417685680|ref|ZP_12334960.1| hypothetical protein SPAR68_0240 [Streptococcus pneumoniae GA41301]
gi|417693121|ref|ZP_12342310.1| hypothetical protein SPAR120_0169 [Streptococcus pneumoniae
GA47901]
gi|417695364|ref|ZP_12344544.1| hypothetical protein SPAR93_0231 [Streptococcus pneumoniae GA47368]
gi|417697670|ref|ZP_12346843.1| hypothetical protein SPAR69_0222 [Streptococcus pneumoniae GA41317]
gi|418073076|ref|ZP_12710339.1| hypothetical protein SPAR19_0223 [Streptococcus pneumoniae GA11184]
gi|418075332|ref|ZP_12712574.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA47502]
gi|418077741|ref|ZP_12714965.1| putative Holliday junction resolvase [Streptococcus pneumoniae
4027-06]
gi|418079900|ref|ZP_12717116.1| putative Holliday junction resolvase [Streptococcus pneumoniae
6735-05]
gi|418082116|ref|ZP_12719318.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA44288]
gi|418084306|ref|ZP_12721494.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA47281]
gi|418088605|ref|ZP_12725766.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA43265]
gi|418090828|ref|ZP_12727973.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA44452]
gi|418093063|ref|ZP_12730194.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA49138]
gi|418097614|ref|ZP_12734716.1| putative Holliday junction resolvase [Streptococcus pneumoniae
6901-05]
gi|418099794|ref|ZP_12736883.1| putative Holliday junction resolvase [Streptococcus pneumoniae
7286-06]
gi|418101918|ref|ZP_12738995.1| putative Holliday junction resolvase [Streptococcus pneumoniae
NP070]
gi|418108440|ref|ZP_12745475.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA41410]
gi|418109170|ref|ZP_12746199.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA49447]
gi|418111554|ref|ZP_12748559.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA41538]
gi|418113793|ref|ZP_12750786.1| putative Holliday junction resolvase [Streptococcus pneumoniae
5787-06]
gi|418115960|ref|ZP_12752937.1| putative Holliday junction resolvase [Streptococcus pneumoniae
6963-05]
gi|418118155|ref|ZP_12755116.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA18523]
gi|418120312|ref|ZP_12757260.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA44194]
gi|418122520|ref|ZP_12759455.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA44378]
gi|418124824|ref|ZP_12761747.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA44511]
gi|418127102|ref|ZP_12764000.1| putative Holliday junction resolvase [Streptococcus pneumoniae
NP170]
gi|418131610|ref|ZP_12768486.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA11304]
gi|418133925|ref|ZP_12770785.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA11426]
gi|418138546|ref|ZP_12775378.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA13338]
gi|418140825|ref|ZP_12777640.1| hypothetical protein SPAR30_0205 [Streptococcus pneumoniae GA13455]
gi|418142984|ref|ZP_12779787.1| hypothetical protein SPAR31_0162 [Streptococcus pneumoniae GA13494]
gi|418145438|ref|ZP_12782224.1| hypothetical protein SPAR32_0209 [Streptococcus pneumoniae GA13637]
gi|418149788|ref|ZP_12786544.1| hypothetical protein SPAR37_0196 [Streptococcus pneumoniae GA14798]
gi|418151965|ref|ZP_12788705.1| hypothetical protein SPAR38_0201 [Streptococcus pneumoniae GA16121]
gi|418154251|ref|ZP_12790982.1| hypothetical protein SPAR39_0208 [Streptococcus pneumoniae GA16242]
gi|418158839|ref|ZP_12795545.1| hypothetical protein SPAR43_0175 [Streptococcus pneumoniae GA17227]
gi|418161248|ref|ZP_12797939.1| hypothetical protein SPAR49_0238 [Streptococcus pneumoniae GA17328]
gi|418165822|ref|ZP_12802480.1| hypothetical protein SPAR52_0242 [Streptococcus pneumoniae GA17971]
gi|418168296|ref|ZP_12804942.1| hypothetical protein SPAR56_0386 [Streptococcus pneumoniae GA19077]
gi|418175012|ref|ZP_12811610.1| hypothetical protein SPAR71_0245 [Streptococcus pneumoniae GA41437]
gi|418177249|ref|ZP_12813834.1| hypothetical protein SPAR73_0176 [Streptococcus pneumoniae GA41565]
gi|418179583|ref|ZP_12816158.1| hypothetical protein SPAR74_0185 [Streptococcus pneumoniae GA41688]
gi|418181832|ref|ZP_12818393.1| hypothetical protein SPAR78_0234 [Streptococcus pneumoniae GA43380]
gi|418183987|ref|ZP_12820536.1| hypothetical protein SPAR91_0177 [Streptococcus pneumoniae GA47283]
gi|418186217|ref|ZP_12822748.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA47360]
gi|418188442|ref|ZP_12824957.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA47373]
gi|418190671|ref|ZP_12827176.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA47388]
gi|418192894|ref|ZP_12829390.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA47439]
gi|418195013|ref|ZP_12831494.1| hypothetical protein SPAR103_0205 [Streptococcus pneumoniae
GA47688]
gi|418197129|ref|ZP_12833595.1| hypothetical protein SPAR106_0216 [Streptococcus pneumoniae
GA47778]
gi|418199259|ref|ZP_12835708.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA47976]
gi|418213407|ref|ZP_12840142.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA54644]
gi|418215676|ref|ZP_12842402.1| hypothetical protein SPAR147_0187 [Streptococcus pneumoniae
Netherlands15B-37]
gi|418217947|ref|ZP_12844616.1| putative Holliday junction resolvase [Streptococcus pneumoniae
NP127]
gi|418222516|ref|ZP_12849162.1| putative Holliday junction resolvase [Streptococcus pneumoniae
5185-06]
gi|418224652|ref|ZP_12851282.1| putative Holliday junction resolvase [Streptococcus pneumoniae
NP112]
gi|418226818|ref|ZP_12853439.1| putative Holliday junction resolvase [Streptococcus pneumoniae
3063-00]
gi|418231340|ref|ZP_12857929.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA07228]
gi|418233426|ref|ZP_12860007.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA08780]
gi|418235634|ref|ZP_12862203.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA19690]
gi|418237787|ref|ZP_12864344.1| putative Holliday junction resolvase [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|419422113|ref|ZP_13962332.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA43264]
gi|419424277|ref|ZP_13964480.1| putative Holliday junction resolvase [Streptococcus pneumoniae
7533-05]
gi|419426409|ref|ZP_13966593.1| putative Holliday junction resolvase [Streptococcus pneumoniae
5652-06]
gi|419428484|ref|ZP_13968655.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA11856]
gi|419430645|ref|ZP_13970791.1| putative Holliday junction resolvase [Streptococcus pneumoniae
EU-NP05]
gi|419432849|ref|ZP_13972971.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA40183]
gi|419435122|ref|ZP_13975218.1| putative Holliday junction resolvase [Streptococcus pneumoniae
8190-05]
gi|419437888|ref|ZP_13977958.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA13499]
gi|419441632|ref|ZP_13981667.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA13224]
gi|419443861|ref|ZP_13983876.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA19923]
gi|419445969|ref|ZP_13985975.1| putative Holliday junction resolvase [Streptococcus pneumoniae
7879-04]
gi|419448129|ref|ZP_13988127.1| putative Holliday junction resolvase [Streptococcus pneumoniae
4075-00]
gi|419450222|ref|ZP_13990211.1| putative Holliday junction resolvase [Streptococcus pneumoniae
EU-NP02]
gi|419452252|ref|ZP_13992227.1| putative Holliday junction resolvase [Streptococcus pneumoniae
EU-NP03]
gi|419454623|ref|ZP_13994586.1| putative Holliday junction resolvase [Streptococcus pneumoniae
EU-NP04]
gi|419456791|ref|ZP_13996740.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA02254]
gi|419459070|ref|ZP_13999006.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA02270]
gi|419461332|ref|ZP_14001250.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA02714]
gi|419463660|ref|ZP_14003556.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA04175]
gi|419465854|ref|ZP_14005740.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA05248]
gi|419470232|ref|ZP_14010092.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA07914]
gi|419472308|ref|ZP_14012161.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA13430]
gi|419474597|ref|ZP_14014439.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA14688]
gi|419476864|ref|ZP_14016690.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA18068]
gi|419479095|ref|ZP_14018907.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA19101]
gi|419483471|ref|ZP_14023247.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA43257]
gi|419488696|ref|ZP_14028449.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA44386]
gi|419490181|ref|ZP_14029923.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA47179]
gi|419492370|ref|ZP_14032098.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA47210]
gi|419494541|ref|ZP_14034261.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA47461]
gi|419496634|ref|ZP_14036346.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA47522]
gi|419498792|ref|ZP_14038492.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA47597]
gi|419500974|ref|ZP_14040661.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA47628]
gi|419503079|ref|ZP_14042755.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA47760]
gi|419505193|ref|ZP_14044854.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA49194]
gi|419507301|ref|ZP_14046957.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA49542]
gi|419509536|ref|ZP_14049181.1| putative Holliday junction resolvase [Streptococcus pneumoniae
NP141]
gi|419513812|ref|ZP_14053440.1| putative Holliday junction resolvase [Streptococcus pneumoniae
England14-9]
gi|419515929|ref|ZP_14055547.1| hypothetical protein SPAR154_0182 [Streptococcus pneumoniae
GA02506]
gi|419518037|ref|ZP_14057647.1| hypothetical protein SPAR156_0185 [Streptococcus pneumoniae
GA08825]
gi|419520179|ref|ZP_14059778.1| hypothetical protein SPAR7_0197 [Streptococcus pneumoniae GA05245]
gi|419522722|ref|ZP_14062305.1| hypothetical protein SPAR33_0197 [Streptococcus pneumoniae GA13723]
gi|419524966|ref|ZP_14064532.1| hypothetical protein SPAR35_0229 [Streptococcus pneumoniae GA14373]
gi|419527230|ref|ZP_14066777.1| hypothetical protein SPAR51_0216 [Streptococcus pneumoniae GA17719]
gi|419531489|ref|ZP_14071009.1| hypothetical protein SPAR107_0171 [Streptococcus pneumoniae
GA47794]
gi|421208080|ref|ZP_15665105.1| hypothetical protein AMCSP11_000254 [Streptococcus pneumoniae
2070005]
gi|421210213|ref|ZP_15667205.1| hypothetical protein AMCSP03_000221 [Streptococcus pneumoniae
2070035]
gi|421212236|ref|ZP_15669202.1| hypothetical protein AMCSP12_000109 [Streptococcus pneumoniae
2070108]
gi|421214461|ref|ZP_15671396.1| hypothetical protein AMCSP04_000169 [Streptococcus pneumoniae
2070109]
gi|421216599|ref|ZP_15673502.1| hypothetical protein AMCSP13_000227 [Streptococcus pneumoniae
2070335]
gi|421219442|ref|ZP_15676304.1| hypothetical protein AMCSP05_000178 [Streptococcus pneumoniae
2070425]
gi|421221759|ref|ZP_15678560.1| hypothetical protein AMCSP14_000181 [Streptococcus pneumoniae
2070531]
gi|421224074|ref|ZP_15680820.1| hypothetical protein AMCSP06_000194 [Streptococcus pneumoniae
2070768]
gi|421226368|ref|ZP_15683082.1| hypothetical protein AMCSP08_000176 [Streptococcus pneumoniae
2072047]
gi|421228881|ref|ZP_15685559.1| hypothetical protein AMCSP01_000249 [Streptococcus pneumoniae
2061376]
gi|421231029|ref|ZP_15687679.1| hypothetical protein AMCSP16_000178 [Streptococcus pneumoniae
2080076]
gi|421233258|ref|ZP_15689883.1| hypothetical protein AMCSP02_000254 [Streptococcus pneumoniae
2061617]
gi|421235396|ref|ZP_15691997.1| hypothetical protein AMCSP07_000193 [Streptococcus pneumoniae
2071004]
gi|421237654|ref|ZP_15694227.1| hypothetical protein AMCSP15_000216 [Streptococcus pneumoniae
2071247]
gi|421239785|ref|ZP_15696338.1| hypothetical protein AMCSP17_000182 [Streptococcus pneumoniae
2080913]
gi|421242027|ref|ZP_15698556.1| hypothetical protein AMCSP09_000230 [Streptococcus pneumoniae
2081074]
gi|421244101|ref|ZP_15700606.1| hypothetical protein AMCSP10_000059 [Streptococcus pneumoniae
2081685]
gi|421246368|ref|ZP_15702859.1| hypothetical protein AMCSP18_000299 [Streptococcus pneumoniae
2082170]
gi|421248565|ref|ZP_15705028.1| hypothetical protein AMCSP19_000174 [Streptococcus pneumoniae
2082239]
gi|421265278|ref|ZP_15716162.1| hypothetical protein SPAR27_0174 [Streptococcus pneumoniae SPAR27]
gi|421267429|ref|ZP_15718304.1| hypothetical protein SPAR95_0189 [Streptococcus pneumoniae SPAR95]
gi|421269636|ref|ZP_15720493.1| hypothetical protein SPAR48_0185 [Streptococcus pneumoniae SPAR48]
gi|421271854|ref|ZP_15722701.1| hypothetical protein SPAR55_0151 [Streptococcus pneumoniae SPAR55]
gi|421278000|ref|ZP_15728812.1| hypothetical protein SPAR44_0193 [Streptococcus pneumoniae GA17301]
gi|421280239|ref|ZP_15731038.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA04672]
gi|421282447|ref|ZP_15733237.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA04216]
gi|421284557|ref|ZP_15735335.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA60190]
gi|421286736|ref|ZP_15737503.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA58771]
gi|421288874|ref|ZP_15739626.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA54354]
gi|421291006|ref|ZP_15741750.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA56348]
gi|421293544|ref|ZP_15744271.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA56113]
gi|421295478|ref|ZP_15746193.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA58581]
gi|421297655|ref|ZP_15748351.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA60080]
gi|421299926|ref|ZP_15750598.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA19998]
gi|421302061|ref|ZP_15752726.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA17484]
gi|421304190|ref|ZP_15754848.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA62331]
gi|421313183|ref|ZP_15763777.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA47562]
gi|444386728|ref|ZP_21184755.1| RNAse H domain protein, YqgF family [Streptococcus pneumoniae
PCS125219]
gi|444394964|ref|ZP_21192512.1| RNAse H domain protein, YqgF family [Streptococcus pneumoniae
PNI0002]
gi|444396667|ref|ZP_21194154.1| RNAse H domain protein, YqgF family [Streptococcus pneumoniae
PNI0006]
gi|444398734|ref|ZP_21196210.1| RNAse H domain protein, YqgF family [Streptococcus pneumoniae
PNI0007]
gi|444401692|ref|ZP_21198875.1| RNAse H domain protein, YqgF family [Streptococcus pneumoniae
PNI0008]
gi|444407036|ref|ZP_21203703.1| RNAse H domain protein, YqgF family [Streptococcus pneumoniae
PNI0010]
gi|444413629|ref|ZP_21209944.1| RNAse H domain protein, YqgF family [Streptococcus pneumoniae
PNI0153]
gi|444420655|ref|ZP_21216425.1| RNAse H domain protein, YqgF family [Streptococcus pneumoniae
PNI0427]
gi|147931447|gb|EDK82425.1| hypothetical protein CGSSp23BS72_11110 [Streptococcus pneumoniae
SP23-BS72]
gi|183570834|gb|EDT91362.1| conserved hypothetical protein [Streptococcus pneumoniae
CDC1087-00]
gi|183576182|gb|EDT96710.1| conserved hypothetical protein [Streptococcus pneumoniae
CDC3059-06]
gi|220673561|emb|CAR68047.1| putative Holliday junction resolvase [Streptococcus pneumoniae ATCC
700669]
gi|298237605|gb|ADI68736.1| crossover junction endodeoxyribonuclease [Streptococcus pneumoniae
TCH8431/19A]
gi|301799346|emb|CBW31881.1| putative Holliday junction resolvase [Streptococcus pneumoniae
OXC141]
gi|301801141|emb|CBW33814.1| putative Holliday junction resolvase [Streptococcus pneumoniae
INV200]
gi|302642642|gb|EFL72987.1| hypothetical protein CGSSpBS458_10928 [Streptococcus pneumoniae
BS458]
gi|302644936|gb|EFL75183.1| hypothetical protein CGSSpBS457_01582 [Streptococcus pneumoniae
BS457]
gi|306483478|gb|ADM90347.1| conserved hypothetical protein [Streptococcus pneumoniae 670-6B]
gi|327390615|gb|EGE88955.1| hypothetical protein SPAR5_0192 [Streptococcus pneumoniae GA04375]
gi|332075862|gb|EGI86329.1| uncharacterized family protein [Streptococcus pneumoniae GA17570]
gi|332076642|gb|EGI87104.1| hypothetical protein SPAR148_0175 [Streptococcus pneumoniae
GA17545]
gi|332077498|gb|EGI87959.1| hypothetical protein SPAR68_0240 [Streptococcus pneumoniae GA41301]
gi|332202111|gb|EGJ16180.1| hypothetical protein SPAR69_0222 [Streptococcus pneumoniae GA41317]
gi|332203361|gb|EGJ17428.1| hypothetical protein SPAR93_0231 [Streptococcus pneumoniae GA47368]
gi|332204204|gb|EGJ18269.1| hypothetical protein SPAR120_0169 [Streptococcus pneumoniae
GA47901]
gi|353748763|gb|EHD29414.1| putative Holliday junction resolvase [Streptococcus pneumoniae
4027-06]
gi|353751346|gb|EHD31978.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA47502]
gi|353752614|gb|EHD33239.1| hypothetical protein SPAR19_0223 [Streptococcus pneumoniae GA11184]
gi|353754219|gb|EHD34832.1| putative Holliday junction resolvase [Streptococcus pneumoniae
6735-05]
gi|353757553|gb|EHD38146.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA44288]
gi|353760609|gb|EHD41185.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA47281]
gi|353764346|gb|EHD44895.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA43265]
gi|353766201|gb|EHD46741.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA44452]
gi|353767416|gb|EHD47950.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA49138]
gi|353771770|gb|EHD52277.1| putative Holliday junction resolvase [Streptococcus pneumoniae
6901-05]
gi|353773793|gb|EHD54288.1| putative Holliday junction resolvase [Streptococcus pneumoniae
7286-06]
gi|353776967|gb|EHD57441.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA41410]
gi|353777630|gb|EHD58102.1| putative Holliday junction resolvase [Streptococcus pneumoniae
NP070]
gi|353784463|gb|EHD64883.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA49447]
gi|353786611|gb|EHD67022.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA41538]
gi|353788457|gb|EHD68854.1| putative Holliday junction resolvase [Streptococcus pneumoniae
5787-06]
gi|353791598|gb|EHD71972.1| putative Holliday junction resolvase [Streptococcus pneumoniae
6963-05]
gi|353793004|gb|EHD73374.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA18523]
gi|353794867|gb|EHD75219.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA44194]
gi|353797993|gb|EHD78323.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA44378]
gi|353800907|gb|EHD81215.1| putative Holliday junction resolvase [Streptococcus pneumoniae
NP170]
gi|353801680|gb|EHD81982.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA44511]
gi|353808344|gb|EHD88611.1| hypothetical protein SPAR30_0205 [Streptococcus pneumoniae GA13455]
gi|353808402|gb|EHD88668.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA11304]
gi|353810727|gb|EHD90977.1| hypothetical protein SPAR31_0162 [Streptococcus pneumoniae GA13494]
gi|353816312|gb|EHD96521.1| hypothetical protein SPAR32_0209 [Streptococcus pneumoniae GA13637]
gi|353817930|gb|EHD98130.1| hypothetical protein SPAR37_0196 [Streptococcus pneumoniae GA14798]
gi|353818610|gb|EHD98808.1| hypothetical protein SPAR38_0201 [Streptococcus pneumoniae GA16121]
gi|353822543|gb|EHE02718.1| hypothetical protein SPAR39_0208 [Streptococcus pneumoniae GA16242]
gi|353826494|gb|EHE06652.1| hypothetical protein SPAR43_0175 [Streptococcus pneumoniae GA17227]
gi|353830838|gb|EHE10967.1| hypothetical protein SPAR49_0238 [Streptococcus pneumoniae GA17328]
gi|353831917|gb|EHE12040.1| hypothetical protein SPAR52_0242 [Streptococcus pneumoniae GA17971]
gi|353836215|gb|EHE16303.1| hypothetical protein SPAR56_0386 [Streptococcus pneumoniae GA19077]
gi|353843572|gb|EHE23616.1| hypothetical protein SPAR71_0245 [Streptococcus pneumoniae GA41437]
gi|353845691|gb|EHE25731.1| hypothetical protein SPAR73_0176 [Streptococcus pneumoniae GA41565]
gi|353847005|gb|EHE27032.1| hypothetical protein SPAR74_0185 [Streptococcus pneumoniae GA41688]
gi|353850069|gb|EHE30073.1| hypothetical protein SPAR78_0234 [Streptococcus pneumoniae GA43380]
gi|353852456|gb|EHE32444.1| hypothetical protein SPAR91_0177 [Streptococcus pneumoniae GA47283]
gi|353854039|gb|EHE34019.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA47360]
gi|353855584|gb|EHE35553.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA47373]
gi|353858270|gb|EHE38230.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA47388]
gi|353861041|gb|EHE40980.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA47439]
gi|353863132|gb|EHE43061.1| hypothetical protein SPAR103_0205 [Streptococcus pneumoniae
GA47688]
gi|353865666|gb|EHE45573.1| hypothetical protein SPAR106_0216 [Streptococcus pneumoniae
GA47778]
gi|353866847|gb|EHE46743.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA47976]
gi|353870690|gb|EHE50561.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA54644]
gi|353874582|gb|EHE54437.1| hypothetical protein SPAR147_0187 [Streptococcus pneumoniae
Netherlands15B-37]
gi|353877088|gb|EHE56932.1| putative Holliday junction resolvase [Streptococcus pneumoniae
NP127]
gi|353881604|gb|EHE61417.1| putative Holliday junction resolvase [Streptococcus pneumoniae
5185-06]
gi|353883296|gb|EHE63104.1| putative Holliday junction resolvase [Streptococcus pneumoniae
NP112]
gi|353884023|gb|EHE63825.1| putative Holliday junction resolvase [Streptococcus pneumoniae
3063-00]
gi|353889006|gb|EHE68778.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA07228]
gi|353890010|gb|EHE69777.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA08780]
gi|353893563|gb|EHE73308.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA19690]
gi|353894920|gb|EHE74660.1| putative Holliday junction resolvase [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|353903912|gb|EHE79426.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA11426]
gi|353906253|gb|EHE81657.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA13338]
gi|379137148|gb|AFC93939.1| hypothetical protein MYY_0277 [Streptococcus pneumoniae ST556]
gi|379533477|gb|EHY98690.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA02254]
gi|379533942|gb|EHY99154.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA02270]
gi|379535368|gb|EHZ00572.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA02714]
gi|379537893|gb|EHZ03074.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA13499]
gi|379540939|gb|EHZ06110.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA04175]
gi|379541803|gb|EHZ06968.1| hypothetical protein SPAR7_0197 [Streptococcus pneumoniae GA05245]
gi|379547426|gb|EHZ12563.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA05248]
gi|379547865|gb|EHZ13000.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA07914]
gi|379553210|gb|EHZ18294.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA13430]
gi|379553735|gb|EHZ18818.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA11856]
gi|379555128|gb|EHZ20197.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA13224]
gi|379560343|gb|EHZ25369.1| hypothetical protein SPAR33_0197 [Streptococcus pneumoniae GA13723]
gi|379560670|gb|EHZ25692.1| hypothetical protein SPAR35_0229 [Streptococcus pneumoniae GA14373]
gi|379562104|gb|EHZ27118.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA14688]
gi|379567663|gb|EHZ32646.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA18068]
gi|379568393|gb|EHZ33373.1| hypothetical protein SPAR51_0216 [Streptococcus pneumoniae GA17719]
gi|379571554|gb|EHZ36511.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA19923]
gi|379573918|gb|EHZ38864.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA19101]
gi|379578971|gb|EHZ43879.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA40183]
gi|379582982|gb|EHZ47859.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA43257]
gi|379589444|gb|EHZ54283.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA43264]
gi|379590811|gb|EHZ55649.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA44386]
gi|379596067|gb|EHZ60872.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA47210]
gi|379596461|gb|EHZ61265.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA47179]
gi|379596905|gb|EHZ61708.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA47461]
gi|379602759|gb|EHZ67529.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA47522]
gi|379603219|gb|EHZ67988.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA47628]
gi|379603680|gb|EHZ68448.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA47597]
gi|379607107|gb|EHZ71853.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA49194]
gi|379609815|gb|EHZ74552.1| hypothetical protein SPAR107_0171 [Streptococcus pneumoniae
GA47794]
gi|379610453|gb|EHZ75184.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA47760]
gi|379613436|gb|EHZ78148.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA49542]
gi|379615427|gb|EHZ80133.1| putative Holliday junction resolvase [Streptococcus pneumoniae
7879-04]
gi|379616791|gb|EHZ81484.1| putative Holliday junction resolvase [Streptococcus pneumoniae
8190-05]
gi|379619369|gb|EHZ84041.1| putative Holliday junction resolvase [Streptococcus pneumoniae
5652-06]
gi|379621081|gb|EHZ85730.1| putative Holliday junction resolvase [Streptococcus pneumoniae
7533-05]
gi|379624941|gb|EHZ89569.1| putative Holliday junction resolvase [Streptococcus pneumoniae
4075-00]
gi|379625367|gb|EHZ89994.1| putative Holliday junction resolvase [Streptococcus pneumoniae
EU-NP02]
gi|379628215|gb|EHZ92819.1| putative Holliday junction resolvase [Streptococcus pneumoniae
EU-NP03]
gi|379631064|gb|EHZ95644.1| putative Holliday junction resolvase [Streptococcus pneumoniae
EU-NP04]
gi|379631889|gb|EHZ96465.1| putative Holliday junction resolvase [Streptococcus pneumoniae
EU-NP05]
gi|379634722|gb|EHZ99286.1| putative Holliday junction resolvase [Streptococcus pneumoniae
NP141]
gi|379638302|gb|EIA02847.1| putative Holliday junction resolvase [Streptococcus pneumoniae
England14-9]
gi|379639932|gb|EIA04471.1| hypothetical protein SPAR154_0182 [Streptococcus pneumoniae
GA02506]
gi|379642250|gb|EIA06782.1| hypothetical protein SPAR156_0185 [Streptococcus pneumoniae
GA08825]
gi|381310904|gb|EIC51729.1| hypothetical protein CGSSpSV36_0142 [Streptococcus pneumoniae SV36]
gi|381318830|gb|EIC59547.1| hypothetical protein CGSSpSV35_0360 [Streptococcus pneumoniae SV35]
gi|381319831|gb|EIC60513.1| hypothetical protein CGSSp4595_0170 [Streptococcus pneumoniae
459-5]
gi|395575912|gb|EJG36472.1| hypothetical protein AMCSP03_000221 [Streptococcus pneumoniae
2070035]
gi|395576550|gb|EJG37104.1| hypothetical protein AMCSP11_000254 [Streptococcus pneumoniae
2070005]
gi|395582081|gb|EJG42544.1| hypothetical protein AMCSP12_000109 [Streptococcus pneumoniae
2070108]
gi|395582814|gb|EJG43264.1| hypothetical protein AMCSP04_000169 [Streptococcus pneumoniae
2070109]
gi|395585637|gb|EJG46016.1| hypothetical protein AMCSP13_000227 [Streptococcus pneumoniae
2070335]
gi|395590850|gb|EJG51150.1| hypothetical protein AMCSP14_000181 [Streptococcus pneumoniae
2070531]
gi|395591242|gb|EJG51538.1| hypothetical protein AMCSP05_000178 [Streptococcus pneumoniae
2070425]
gi|395591410|gb|EJG51705.1| hypothetical protein AMCSP06_000194 [Streptococcus pneumoniae
2070768]
gi|395597226|gb|EJG57433.1| hypothetical protein AMCSP16_000178 [Streptococcus pneumoniae
2080076]
gi|395597438|gb|EJG57644.1| hypothetical protein AMCSP08_000176 [Streptococcus pneumoniae
2072047]
gi|395598548|gb|EJG58749.1| hypothetical protein AMCSP01_000249 [Streptococcus pneumoniae
2061376]
gi|395603970|gb|EJG64103.1| hypothetical protein AMCSP02_000254 [Streptococcus pneumoniae
2061617]
gi|395604315|gb|EJG64447.1| hypothetical protein AMCSP07_000193 [Streptococcus pneumoniae
2071004]
gi|395605180|gb|EJG65311.1| hypothetical protein AMCSP15_000216 [Streptococcus pneumoniae
2071247]
gi|395610659|gb|EJG70735.1| hypothetical protein AMCSP17_000182 [Streptococcus pneumoniae
2080913]
gi|395611067|gb|EJG71141.1| hypothetical protein AMCSP10_000059 [Streptococcus pneumoniae
2081685]
gi|395611890|gb|EJG71944.1| hypothetical protein AMCSP09_000230 [Streptococcus pneumoniae
2081074]
gi|395615194|gb|EJG75210.1| hypothetical protein AMCSP19_000174 [Streptococcus pneumoniae
2082239]
gi|395616487|gb|EJG76498.1| hypothetical protein AMCSP18_000299 [Streptococcus pneumoniae
2082170]
gi|395869300|gb|EJG80415.1| hypothetical protein SPAR27_0174 [Streptococcus pneumoniae SPAR27]
gi|395870288|gb|EJG81401.1| hypothetical protein SPAR48_0185 [Streptococcus pneumoniae SPAR48]
gi|395872518|gb|EJG83616.1| hypothetical protein SPAR95_0189 [Streptococcus pneumoniae SPAR95]
gi|395877413|gb|EJG88482.1| hypothetical protein SPAR55_0151 [Streptococcus pneumoniae SPAR55]
gi|395883119|gb|EJG94162.1| hypothetical protein SPAR44_0193 [Streptococcus pneumoniae GA17301]
gi|395883596|gb|EJG94638.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA04672]
gi|395884417|gb|EJG95455.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA04216]
gi|395888477|gb|EJG99488.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA60190]
gi|395890134|gb|EJH01140.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA54354]
gi|395890995|gb|EJH01998.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA58771]
gi|395896598|gb|EJH07565.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA56113]
gi|395896806|gb|EJH07771.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA56348]
gi|395897547|gb|EJH08506.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA58581]
gi|395901023|gb|EJH11960.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA19998]
gi|395902875|gb|EJH13807.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA17484]
gi|395905026|gb|EJH15935.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA60080]
gi|395906581|gb|EJH17479.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA62331]
gi|395915154|gb|EJH25994.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA47562]
gi|406368641|gb|AFS42331.1| putative Holliday junction resolvase [Streptococcus pneumoniae
gamPNI0373]
gi|429317192|emb|CCP36945.1| putative Holliday junction resolvase [Streptococcus pneumoniae
SPN034156]
gi|429318733|emb|CCP31936.1| putative Holliday junction resolvase [Streptococcus pneumoniae
SPN034183]
gi|429320546|emb|CCP33909.1| putative Holliday junction resolvase [Streptococcus pneumoniae
SPN994039]
gi|429322366|emb|CCP29950.1| putative Holliday junction resolvase [Streptococcus pneumoniae
SPN994038]
gi|444254479|gb|ELU60912.1| RNAse H domain protein, YqgF family [Streptococcus pneumoniae
PCS125219]
gi|444258933|gb|ELU65250.1| RNAse H domain protein, YqgF family [Streptococcus pneumoniae
PNI0002]
gi|444261898|gb|ELU68196.1| RNAse H domain protein, YqgF family [Streptococcus pneumoniae
PNI0006]
gi|444267793|gb|ELU73682.1| RNAse H domain protein, YqgF family [Streptococcus pneumoniae
PNI0008]
gi|444269851|gb|ELU75648.1| RNAse H domain protein, YqgF family [Streptococcus pneumoniae
PNI0007]
gi|444270632|gb|ELU76383.1| RNAse H domain protein, YqgF family [Streptococcus pneumoniae
PNI0010]
gi|444272800|gb|ELU78487.1| RNAse H domain protein, YqgF family [Streptococcus pneumoniae
PNI0153]
gi|444284145|gb|ELU89307.1| RNAse H domain protein, YqgF family [Streptococcus pneumoniae
PNI0427]
Length = 136
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 9/138 (6%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLDVG K VG++ISDP A L ++ + + + L+ + +E F+VG P
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGLPK 60
Query: 85 NRQQNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTSKGVE-LLLNPLDLHPVEY 140
N + V+ + KLE+ + Y +E T+ E +L+ D+ +
Sbjct: 61 NMNNTSGPRVEAS-----QAYGAKLEEFFGLPVDYQDERLTTVAAERMLIEQADISRNKR 115
Query: 141 KTILDKFAAVGILQEYLD 158
K ++DK AA ILQ YLD
Sbjct: 116 KKVIDKLAAQLILQNYLD 133
>gi|386345689|ref|YP_006041853.1| putative Holliday junction resolvase [Streptococcus thermophilus
JIM 8232]
gi|339279150|emb|CCC20898.1| putative Holliday junction resolvase [Streptococcus thermophilus
JIM 8232]
Length = 136
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 70/136 (51%), Gaps = 5/136 (3%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLDVG K VG++ISDP A + ++ + + + L+ E+ ++ F+VG P
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGVEIIKINEEAKEFGFDRLGELVKEYQVDKFVVGLPK 60
Query: 85 NRQQNAADAVQV-KLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYKT 142
N V+ K + D + K++ ++ Y +E T+ E +L+ D+ + K
Sbjct: 61 NMNNTEGPRVEASKAYGDKI---KEIFNLPVDYQDERLTTVQAERMLVEQADVSRDKRKK 117
Query: 143 ILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 118 VIDKLAAQLILQNYLD 133
>gi|456369821|gb|EMF48721.1| Putative Holliday junction resolvase [Streptococcus parauberis
KRS-02109]
gi|457094038|gb|EMG24593.1| Putative Holliday junction resolvase [Streptococcus parauberis
KRS-02083]
Length = 136
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 70/135 (51%), Gaps = 3/135 (2%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLDVG K VG++ISDP A L ++ ++ + L++++ ++ F+VG P
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEDKKEFGLARLEELVNQYKVDKFVVGLPK 60
Query: 85 NRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYKTI 143
N ++ V+ +L ++ ++ Y +E T+ E +L+ D+ + K +
Sbjct: 61 NMNNSSGPRVEASQAYGNL--IQEQFNIPVEYQDERLTTVQAERMLIEQADISRGKRKKV 118
Query: 144 LDKFAAVGILQEYLD 158
+DK AA ILQ YLD
Sbjct: 119 IDKLAAQLILQNYLD 133
>gi|306834532|ref|ZP_07467645.1| crossover junction endodeoxyribonuclease [Streptococcus bovis ATCC
700338]
gi|304423334|gb|EFM26487.1| crossover junction endodeoxyribonuclease [Streptococcus bovis ATCC
700338]
Length = 136
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 70/136 (51%), Gaps = 5/136 (3%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLDVG K VG++ISDP A + ++ + + E L+ ++ ++ F+VG P
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGVEIVRIDEEAGEFGFERLEELVKQYKVDKFVVGLPK 60
Query: 85 NRQQNAADAVQV-KLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYKT 142
N V+ K + D ++ +L ++ Y +E T+ E +L+ D+ + K
Sbjct: 61 NMNNTEGPRVEASKAYGDKIN---ELFNIPVDYQDERLTTVQAERMLVEQADVSRGKRKK 117
Query: 143 ILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 118 VIDKLAAQLILQNYLD 133
>gi|387625688|ref|YP_006061860.1| putative Holliday junction resolvase [Streptococcus pneumoniae
INV104]
gi|444383358|ref|ZP_21181548.1| RNAse H domain protein, YqgF family [Streptococcus pneumoniae
PCS8106]
gi|444386036|ref|ZP_21184101.1| RNAse H domain protein, YqgF family [Streptococcus pneumoniae
PCS8203]
gi|301793470|emb|CBW35843.1| putative Holliday junction resolvase [Streptococcus pneumoniae
INV104]
gi|444248475|gb|ELU54981.1| RNAse H domain protein, YqgF family [Streptococcus pneumoniae
PCS8203]
gi|444249511|gb|ELU56000.1| RNAse H domain protein, YqgF family [Streptococcus pneumoniae
PCS8106]
Length = 136
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 9/138 (6%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLDVG K VG++ISDP A L ++ + + + L+ + +E F+VG P
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGLPK 60
Query: 85 NRQQNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTSKGVE-LLLNPLDLHPVEY 140
N + V+ + KLE+ + Y +E T+ E +L+ D+ +
Sbjct: 61 NMNNTSGPRVEAS-----QAYGAKLEEFFGLPLDYQDERLTTVAAERMLIEQADISRNKR 115
Query: 141 KTILDKFAAVGILQEYLD 158
K ++DK AA ILQ YLD
Sbjct: 116 KKVIDKLAAQLILQNYLD 133
>gi|89054672|ref|YP_510123.1| Holliday junction resolvase YqgF [Jannaschia sp. CCS1]
gi|88864221|gb|ABD55098.1| Holliday junction resolvase YqgF [Jannaschia sp. CCS1]
Length = 145
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 3/136 (2%)
Query: 24 FLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYP 83
+GLD+G K +G+++SD AS L + RKK +D A+ LI++ + G I+G P
Sbjct: 4 LIGLDLGTKTIGVALSDRLLTSASALETVKRKKFGVD--ADALAGLIAKHEVGGIILGLP 61
Query: 84 FNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
N + Q + F +LS + +W+E ++ E L D
Sbjct: 62 RNMDGSEGPRAQATRAFALNLSRRGDFAHLALGFWDERLSTVAAERALIAADTSRKRRSE 121
Query: 143 ILDKFAAVGILQEYLD 158
++D AA ILQ LD
Sbjct: 122 VIDAVAASYILQGALD 137
>gi|386714909|ref|YP_006181232.1| Holliday junction resolvase [Halobacillus halophilus DSM 2266]
gi|384074465|emb|CCG45958.1| probable Holliday junction resolvase [Halobacillus halophilus DSM
2266]
Length = 138
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 2/135 (1%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLDVG+K VG++ISD A L+ + + + + + +I E + +VG+P
Sbjct: 4 IGLDVGEKTVGVAISDALGWTAQGLTTIHWDETDFNTVRGPLQKIIEEHEITEAVVGFPK 63
Query: 85 NRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
N + + KK + W+E T+ E +L D+ + K ++
Sbjct: 64 NMNGTVGPRGEASQRF--AAWIKKEYKIPSHLWDERLTTMAAERVLLDADVSRKKRKKVI 121
Query: 145 DKFAAVGILQEYLDN 159
DK AAV ILQ YLD+
Sbjct: 122 DKMAAVIILQSYLDS 136
>gi|418129378|ref|ZP_12766262.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA07643]
gi|421274180|ref|ZP_15725012.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA52612]
gi|353802670|gb|EHD82962.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA07643]
gi|395874908|gb|EJG85989.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA52612]
Length = 136
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 9/138 (6%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLDVG K VG++ISDP A L ++ + + + L+ + +E F+VG P
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDAYKVERFVVGLPK 60
Query: 85 NRQQNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTSKGVE-LLLNPLDLHPVEY 140
N + V+ + KLE+ + Y +E T+ E +L+ D+ +
Sbjct: 61 NMNNTSGPRVEAS-----QAYGAKLEELFGLPVDYQDERLTTVAAERMLIEQADISRNKR 115
Query: 141 KTILDKFAAVGILQEYLD 158
K ++DK AA ILQ YLD
Sbjct: 116 KKVIDKLAAQLILQNYLD 133
>gi|317471885|ref|ZP_07931220.1| hypothetical protein HMPREF1011_01569 [Anaerostipes sp. 3_2_56FAA]
gi|316900658|gb|EFV22637.1| hypothetical protein HMPREF1011_01569 [Anaerostipes sp. 3_2_56FAA]
Length = 138
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 5/139 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRK-KNTIDLMAEDFRSLISEFNLEGFIVG 81
R LGLD G K VG+++SD A P + RK +N + +++E+ +E ++G
Sbjct: 2 RILGLDYGTKTVGVALSDELGITAQPFETITRKDENKLRKTYARIEEIVAEYKVEKIVLG 61
Query: 82 YPFNRQQNAAD-AVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
YP N + + + F D L L+ + W+E ++ +L +
Sbjct: 62 YPKNMNNTIGERGMATEAFRDSLVRRTGLDVI---LWDERLSTVASNKVLMESGVRREHR 118
Query: 141 KTILDKFAAVGILQEYLDN 159
K ++D+ AA ILQ YLD+
Sbjct: 119 KKVIDQVAASMILQGYLDS 137
>gi|307704051|ref|ZP_07640982.1| Holliday junction resolvase, putative [Streptococcus mitis SK597]
gi|307709897|ref|ZP_07646344.1| Holliday junction resolvase, putative [Streptococcus mitis SK564]
gi|418095300|ref|ZP_12732416.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA16531]
gi|307619268|gb|EFN98397.1| Holliday junction resolvase, putative [Streptococcus mitis SK564]
gi|307622402|gb|EFO01408.1| Holliday junction resolvase, putative [Streptococcus mitis SK597]
gi|353772080|gb|EHD52586.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA16531]
Length = 136
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 9/138 (6%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLDVG K VG++ISDP A L ++ + + + L+ + +E F+VG P
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGLPK 60
Query: 85 NRQQNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTSKGVE-LLLNPLDLHPVEY 140
N + V+ + KLE+ + Y +E T+ E +L+ D+ +
Sbjct: 61 NMNNTSGPRVEAS-----QAYGAKLEELFGLPVDYQDERLTTVAAERMLIEQADISRNKR 115
Query: 141 KTILDKFAAVGILQEYLD 158
K ++DK AA ILQ YLD
Sbjct: 116 KKVIDKLAAQLILQNYLD 133
>gi|384917818|ref|ZP_10017927.1| Holliday junction resolvase-like protein [Citreicella sp. 357]
gi|384468350|gb|EIE52786.1| Holliday junction resolvase-like protein [Citreicella sp. 357]
Length = 157
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 6/134 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+G K +G++ISD + +A+P + RKK T+D A +++ + + G ++G P N
Sbjct: 21 GLDLGTKTIGVAISDRLHGVATPQETVKRKKFTLD--ANRLLAILKDREVGGIVLGLPRN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
+ Q + F + + +L D A+W+E ++ E L D + ++
Sbjct: 79 MDGSEGPRCQSTRAFARNFA---QLWDGPIAFWDERLSTVAAERALIEADTSRAKRAELI 135
Query: 145 DKFAAVGILQEYLD 158
D AA ILQ LD
Sbjct: 136 DHVAASFILQGALD 149
>gi|228475168|ref|ZP_04059894.1| conserved hypothetical protein [Staphylococcus hominis SK119]
gi|418618525|ref|ZP_13181390.1| RNAse H domain protein, YqgF family [Staphylococcus hominis VCU122]
gi|228270779|gb|EEK12181.1| conserved hypothetical protein [Staphylococcus hominis SK119]
gi|374827285|gb|EHR91148.1| RNAse H domain protein, YqgF family [Staphylococcus hominis VCU122]
Length = 142
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 1/139 (0%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV 80
R + LGLDVG + VG++ISD A L L + + + S+I + N+ ++
Sbjct: 3 RHKILGLDVGSRTVGIAISDLMGWTAQGLDTLRINEEDEEFGIDRLVSIIKDNNVGSVVI 62
Query: 81 GYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
G P N + + L +L + L +++ W+E ++ E L D+ +
Sbjct: 63 GLPKNMNNSIGFRGEASLKYKEL-LQEALPNIEIIMWDERLSTMAAERSLLEADVSRQKR 121
Query: 141 KTILDKFAAVGILQEYLDN 159
K ++DK AAV ILQ YLD+
Sbjct: 122 KKVIDKMAAVFILQGYLDS 140
>gi|384160269|ref|YP_005542342.1| Holliday junction resolvase-like protein [Bacillus
amyloliquefaciens TA208]
gi|384165206|ref|YP_005546585.1| Holliday junction resolvase [Bacillus amyloliquefaciens LL3]
gi|384169345|ref|YP_005550723.1| holliday junction resolvase-like protein [Bacillus
amyloliquefaciens XH7]
gi|328554357|gb|AEB24849.1| Holliday junction resolvase-like protein [Bacillus
amyloliquefaciens TA208]
gi|328912761|gb|AEB64357.1| Putative Holliday junction resolvase [Bacillus amyloliquefaciens
LL3]
gi|341828624|gb|AEK89875.1| holliday junction resolvase-like protein [Bacillus
amyloliquefaciens XH7]
Length = 138
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 66/139 (47%), Gaps = 2/139 (1%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD+G K +G+++SD A + + + D + L+ ++N+E ++G+
Sbjct: 2 RILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLDRLSELMKDYNVEKIVLGF 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N + L T ++ W+E T+ E +L D+ + K
Sbjct: 62 PKNMNGTIGPRGEASQTFAKLLETAY--NVPVVLWDERLTTMAAEKMLIAADVSRQKRKK 119
Query: 143 ILDKFAAVGILQEYLDNAN 161
++DK AAV ILQ +LD+ N
Sbjct: 120 VIDKMAAVMILQGFLDSLN 138
>gi|114771780|ref|ZP_01449173.1| hypothetical protein OM2255_12592 [Rhodobacterales bacterium
HTCC2255]
gi|114547596|gb|EAU50487.1| hypothetical protein OM2255_12592 [alpha proteobacterium HTCC2255]
Length = 156
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 70/143 (48%), Gaps = 6/143 (4%)
Query: 17 KVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLE 76
+++K +GLD+G K +G+++SD +A+P + RKK ID A +++ + +
Sbjct: 13 ELTKFKSLIGLDLGTKTIGIAVSDTLWTVATPRETIKRKKFGIDCDA--LQTVFNSTDTG 70
Query: 77 GFIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDL 135
G I+G P N + Q + F +LS+ D+ +W+E +S E + D+
Sbjct: 71 GIILGLPMNMDGSEGPRCQATRAFARNLSSRC---DIPITFWDERLSSVAAERAMLEADM 127
Query: 136 HPVEYKTILDKFAAVGILQEYLD 158
+ +D AA ILQ LD
Sbjct: 128 SRAKRADNIDHVAASFILQGALD 150
>gi|354568561|ref|ZP_08987725.1| Holliday junction resolvase [Fischerella sp. JSC-11]
gi|353540284|gb|EHC09761.1| Holliday junction resolvase [Fischerella sp. JSC-11]
Length = 174
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 76/148 (51%), Gaps = 8/148 (5%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
LGLDVG K +G++ D IA+ ++ + ++ + + E + L++E ++ +VG P+
Sbjct: 31 LGLDVGRKRIGVAGCDRLGLIATGITTV--ERTSFGQVVEQIQKLVNEREVQVLVVGLPY 88
Query: 85 NRQQNAA-DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143
+ + A QV+ F L KL Y +E TS E LL + P +K +
Sbjct: 89 SMDGSLGFQAKQVQKFATRLGKVLKL---PVEYVDERLTSFQAEQLLIAENRSPSRHKAL 145
Query: 144 LDKFAAVGILQEYLDNANRKVNLKANVL 171
+D+ AA ILQ++LD R+ L++ L
Sbjct: 146 IDRKAAALILQQWLD--TRRAGLQSTEL 171
>gi|138896124|ref|YP_001126577.1| hypothetical protein GTNG_2487 [Geobacillus thermodenitrificans
NG80-2]
gi|196250077|ref|ZP_03148771.1| Holliday junction resolvase YqgF [Geobacillus sp. G11MC16]
gi|167012727|sp|A4IR78.1|RUVX_GEOTN RecName: Full=Putative Holliday junction resolvase
gi|134267637|gb|ABO67832.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
NG80-2]
gi|196210261|gb|EDY05026.1| Holliday junction resolvase YqgF [Geobacillus sp. G11MC16]
Length = 138
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 4/138 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD+G K +G+++SD A L + + E R++I E+ ++ +VG+
Sbjct: 2 RTLGLDLGTKTLGVAVSDEFGWTAQGLETIAIDEERGHYGFERLRAIIDEYGVDTIVVGW 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLE-DMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + + +A + E + W+E ++ E +L D+ + +
Sbjct: 62 PKNMNGTLGPRAEAS---ERFAAKLREEFSLPVVLWDERLSTMAAERMLIAADVSRKKRR 118
Query: 142 TILDKFAAVGILQEYLDN 159
++DK AA ILQ YLD+
Sbjct: 119 KVIDKMAAAVILQSYLDS 136
>gi|111024086|ref|YP_707058.1| Holliday junction resolvase-like protein [Rhodococcus jostii RHA1]
gi|397737663|ref|ZP_10504328.1| hypothetical protein JVH1_8935 [Rhodococcus sp. JVH1]
gi|118597220|sp|Q0S0N6.1|RUVX_RHOSR RecName: Full=Putative Holliday junction resolvase
gi|110823616|gb|ABG98900.1| probable Holliday junction resolvase [Rhodococcus jostii RHA1]
gi|396926395|gb|EJI93639.1| hypothetical protein JVH1_8935 [Rhodococcus sp. JVH1]
Length = 178
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 7/149 (4%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFR---SLISEFNLEG 77
RGR +G+DVG +G++ SDP +A+P+ + R K A D R ++ E+
Sbjct: 18 RGRRIGIDVGSVRIGVASSDPDGILATPVETVPRSKER-GPDAPDIRRIADIVEEYEAVE 76
Query: 78 FIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH 136
IVG P R + A +F L +K++ + +E T+ L +
Sbjct: 77 VIVGLPQTLRGERGKAASIATVFAKRLR--RKVDPIPVRMADERLTTVTAARALRESGVS 134
Query: 137 PVEYKTILDKFAAVGILQEYLDNANRKVN 165
+ ++D+ AAV ILQ +LD +R VN
Sbjct: 135 ARGQRPVIDQAAAVAILQGWLDERSRSVN 163
>gi|409358387|ref|ZP_11236750.1| Holliday junction resolvase-like protein [Dietzia alimentaria 72]
Length = 163
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 70/142 (49%), Gaps = 5/142 (3%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFR--SLISEFNLEGF 78
RGR LGLDVG +G++ DP +A+P+ + +AE R L+ E++ G
Sbjct: 19 RGRRLGLDVGTARIGVASCDPDGILATPVETIRVSDGDPHWLAEIRRLNDLVEEYDALGV 78
Query: 79 IVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHP 137
IVG P + + + A + F+ L A ++ + +E T+ L+ +
Sbjct: 79 IVGLPTSLKGRETASTAMSRSFVTALEAVSP--EIPVEFTDERLTTVTAGAALHGAGRNT 136
Query: 138 VEYKTILDKFAAVGILQEYLDN 159
+ + ++D+ AAV +LQ +LD+
Sbjct: 137 RKQRDVIDQAAAVVLLQAWLDS 158
>gi|310643513|ref|YP_003948271.1| holliday junction resolvase [Paenibacillus polymyxa SC2]
gi|309248463|gb|ADO58030.1| Holliday junction resolvase-like protein [Paenibacillus polymyxa
SC2]
gi|392304268|emb|CCI70631.1| putative Holliday junction resolvase [Paenibacillus polymyxa M1]
Length = 138
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 4/136 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
+ +GLD GD+ +G+++SD A L V+ R+ + D +L+ E + +VG
Sbjct: 2 KVMGLDYGDRRIGVAVSDAFGWTAQGLVVIERRGD--DSEFGKIANLVREHEIGEVVVGL 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N N + ++ I+ + K+L + W+E T++ E L D+ + K
Sbjct: 60 PKN--MNGTVGPRGEICIEFANRLKELLGLPVHLWDERLTTRSAERALLEADVSRKKRKQ 117
Query: 143 ILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 118 VVDKLAASLILQNYLD 133
>gi|85707211|ref|ZP_01038297.1| hypothetical protein ROS217_23800 [Roseovarius sp. 217]
gi|85668265|gb|EAQ23140.1| hypothetical protein ROS217_23800 [Roseovarius sp. 217]
Length = 160
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 67/140 (47%), Gaps = 7/140 (5%)
Query: 21 RGR-FLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFI 79
RGR +GLD+G K +G+++SD +ASP + R K T D A +++ ++ G I
Sbjct: 15 RGRAIMGLDLGTKTIGVALSDRLWSVASPHETVKRVKFTED--AARLFDIMTGRDVGGII 72
Query: 80 VGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
+G P N + Q + F +LS +L D YW+E ++ E L D
Sbjct: 73 LGLPRNMDGSEGPRAQSTRAFARNLS---RLTDAPIGYWDERLSTVAAERALLEADATRK 129
Query: 139 EYKTILDKFAAVGILQEYLD 158
++D AA ILQ LD
Sbjct: 130 RRMQVIDNIAAAYILQGVLD 149
>gi|307702671|ref|ZP_07639623.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
gi|307623787|gb|EFO02772.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
Length = 136
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 9/138 (6%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLDVG K VG++ISDP A L ++ ++ + + L+ + +E F+VG P
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGQFGFDRIKELVDIYKVERFVVGLPK 60
Query: 85 NRQQNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTSKGVE-LLLNPLDLHPVEY 140
N + V+ + KLE+ + Y +E T+ E +L+ D+ +
Sbjct: 61 NMNNTSGPRVEAS-----QAYGAKLEELFGLPVDYQDERLTTVAAERMLIEQADISRNKR 115
Query: 141 KTILDKFAAVGILQEYLD 158
K ++DK AA ILQ YLD
Sbjct: 116 KKVIDKLAAQLILQNYLD 133
>gi|299144217|ref|ZP_07037297.1| putative Holliday junction resolvase [Peptoniphilus sp. oral taxon
386 str. F0131]
gi|298518702|gb|EFI42441.1| putative Holliday junction resolvase [Peptoniphilus sp. oral taxon
386 str. F0131]
Length = 140
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 68/138 (49%), Gaps = 6/138 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
+ LGLD+GDK++G+++SD A PL + R+ N ED +LI E N+ +VG
Sbjct: 7 KILGLDIGDKWIGVAVSDLLGITAQPLVTIKRESN--KQAYEDIYNLIKENNIAKVVVGL 64
Query: 83 PFNRQQN-AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + +V F + L +E + Y +E T+ +L ++ K
Sbjct: 65 PKNMNNTLGPQSEKVLKFSEKLKNKYGVEII---YIDERMTTISANRILIEGEVRRENRK 121
Query: 142 TILDKFAAVGILQEYLDN 159
+DK AA ILQ YLD+
Sbjct: 122 QYVDKIAATYILQTYLDS 139
>gi|162148752|ref|YP_001603213.1| Holliday junction resolvase [Gluconacetobacter diazotrophicus PAl
5]
gi|209545482|ref|YP_002277711.1| Holliday junction resolvase YqgF [Gluconacetobacter diazotrophicus
PAl 5]
gi|189046098|sp|A9HRJ3.1|RUVX_GLUDA RecName: Full=Putative Holliday junction resolvase
gi|161787329|emb|CAP56923.1| putative Holliday junction resolvase [Gluconacetobacter
diazotrophicus PAl 5]
gi|209533159|gb|ACI53096.1| Holliday junction resolvase YqgF [Gluconacetobacter diazotrophicus
PAl 5]
Length = 154
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 71/146 (48%), Gaps = 5/146 (3%)
Query: 14 LKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEF 73
++ ++ + R LGLD G K +GL++SD +ASP L R K + ++A + R + +
Sbjct: 9 IRGQLGRDQRLLGLDPGQKTIGLALSDVSLMLASPYGALRRGK--LSVVAAEIRRIAARE 66
Query: 74 NLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGV-ELLLNP 132
+ G + G P + + A Q D + + + + A W+E +S V +L+
Sbjct: 67 GVGGLVSGLPLSMDGSFGPAAQAAR--DWMISLSEQVGLPAAMWDERLSSSAVNRMLIQD 124
Query: 133 LDLHPVEYKTILDKFAAVGILQEYLD 158
D+ ++DK AA +LQ LD
Sbjct: 125 ADMTRQRRAELVDKLAASYMLQGALD 150
>gi|313890363|ref|ZP_07823994.1| RNAse H domain protein, YqgF family [Streptococcus pseudoporcinus
SPIN 20026]
gi|416852959|ref|ZP_11910104.1| RNAse H domain protein, YqgF family [Streptococcus pseudoporcinus
LQ 940-04]
gi|313121206|gb|EFR44314.1| RNAse H domain protein, YqgF family [Streptococcus pseudoporcinus
SPIN 20026]
gi|356740448|gb|EHI65680.1| RNAse H domain protein, YqgF family [Streptococcus pseudoporcinus
LQ 940-04]
Length = 139
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG++ISDP A L ++ + + L++++ + F+VG
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEANQAFGFDRLSELVAQYKVSQFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + V+ ++L + Y +E T+ E +L+ D+ + K
Sbjct: 62 PKNMNNTSGPRVEASQAYG--QKIQELFKIPVVYQDERLTTVEAERMLIEQADISRGKRK 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 120 KVIDKLAAQLILQNYLD 136
>gi|22299872|ref|NP_683119.1| Holliday junction resolvase-like protein [Thermosynechococcus
elongatus BP-1]
gi|32130026|sp|Q8DGI8.1|RUVX_THEEB RecName: Full=Putative Holliday junction resolvase
gi|22296057|dbj|BAC09881.1| tll2329 [Thermosynechococcus elongatus BP-1]
Length = 151
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 6/136 (4%)
Query: 24 FLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYP 83
LGLD+G K +G++ D ++A+ ++ + R+ D+ R + E +E IVG P
Sbjct: 4 VLGLDLGRKRIGVAGCDRLGQLATGITTIYRRNFASDVA--QLRRICQERGVEKLIVGLP 61
Query: 84 FNRQ-QNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
+ Q + A QV+ + + A L Y +E TS E +L P +K
Sbjct: 62 YTLDGQLGSQARQVQHLAEKIGAALNL---PVEYIDERLTSFQAEEILKQRRRSPRHHKD 118
Query: 143 ILDKFAAVGILQEYLD 158
++D+ AA ILQ++LD
Sbjct: 119 LVDQIAAALILQQWLD 134
>gi|405761611|ref|YP_006702207.1| Holliday junction resolvase [Streptococcus pneumoniae SPNA45]
gi|404278499|emb|CCM09119.1| putative Holliday junction resolvase [Streptococcus pneumoniae
SPNA45]
Length = 136
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 9/138 (6%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLDVG K VG++ISDP A L ++ + + + L+ + +E F+VG P
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGKFGFDRVKELVDTYKVERFVVGLPK 60
Query: 85 NRQQNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTSKGVE-LLLNPLDLHPVEY 140
N + V+ + KLE+ + Y +E T+ E +L+ D+ +
Sbjct: 61 NMNNTSGPRVEAS-----QAYGAKLEEFFGLPVDYQDERLTTVAAERMLIEQADISRNKR 115
Query: 141 KTILDKFAAVGILQEYLD 158
K ++DK AA ILQ YLD
Sbjct: 116 KKVIDKLAAQLILQNYLD 133
>gi|300811591|ref|ZP_07092075.1| RNAse YqgF [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
gi|313124258|ref|YP_004034517.1| holliday junction resolvase [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|385816184|ref|YP_005852575.1| Putative Holliday junction resolvase [Lactobacillus delbrueckii
subsp. bulgaricus 2038]
gi|422844166|ref|ZP_16890876.1| crossover junction endodeoxyribonuclease [Lactobacillus delbrueckii
subsp. lactis DSM 20072]
gi|300497451|gb|EFK32489.1| RNAse YqgF [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
gi|312280821|gb|ADQ61540.1| Putative Holliday junction resolvase [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
gi|325126221|gb|ADY85551.1| Putative Holliday junction resolvase [Lactobacillus delbrueckii
subsp. bulgaricus 2038]
gi|325685731|gb|EGD27809.1| crossover junction endodeoxyribonuclease [Lactobacillus delbrueckii
subsp. lactis DSM 20072]
Length = 142
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 10/141 (7%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K +G+++SDP A + + ++ + + L+ E+ +GF++G
Sbjct: 2 RLLGLDVGSKTIGVAVSDPLGITAQAVMTIPIDEDRHNFGMRSLKKLVREYEADGFVLGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTSKGVE-LLLNPLDLHP- 137
P N A +V + ++LE + Y +E T+ E +L+ +H
Sbjct: 62 PKNMDGTAGRSVS-----RSKAMGERLEQKFGLPVYYDDERLTTVASERILVEEAGMHDR 116
Query: 138 VEYKTILDKFAAVGILQEYLD 158
+ K ++D+ AAV ILQ YLD
Sbjct: 117 RQRKEVVDQMAAVLILQNYLD 137
>gi|330718936|ref|ZP_08313536.1| Holliday junction resolvase-like protein [Leuconostoc fallax KCTC
3537]
Length = 143
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 15/143 (10%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG + VG+++SDP A + ++ + + E +I E +G ++G
Sbjct: 2 RILGLDVGSRTVGVAVSDPMGWTAQGVEIIRIDEAAKEFGLERLGEIIQETKAKGVVLGL 61
Query: 83 PFN-------RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDL 135
P N R Q A D K+ D+ + +D + T + +L+ D+
Sbjct: 62 PKNMNNTEGPRAQAARD--YAKMVEDNFGLSTDFQDERLT------TVQAERMLIEEADV 113
Query: 136 HPVEYKTILDKFAAVGILQEYLD 158
+ K ++DK AA ILQ YLD
Sbjct: 114 SRKKRKKVIDKIAAEFILQNYLD 136
>gi|77463236|ref|YP_352740.1| Holliday junction resolvase-like protein [Rhodobacter sphaeroides
2.4.1]
gi|126462110|ref|YP_001043224.1| Holliday junction resolvase-like protein [Rhodobacter sphaeroides
ATCC 17029]
gi|332558114|ref|ZP_08412436.1| Holliday junction resolvase-like protein [Rhodobacter sphaeroides
WS8N]
gi|429206594|ref|ZP_19197860.1| Putative Holliday junction resolvase YggF [Rhodobacter sp. AKP1]
gi|146325603|sp|Q3J2Z5.1|RUVX_RHOS4 RecName: Full=Putative Holliday junction resolvase
gi|167012752|sp|A3PJD6.1|RUVX_RHOS1 RecName: Full=Putative Holliday junction resolvase
gi|77387654|gb|ABA78839.1| putative endonuclease involved in recombination [Rhodobacter
sphaeroides 2.4.1]
gi|126103774|gb|ABN76452.1| Holliday junction resolvase YqgF [Rhodobacter sphaeroides ATCC
17029]
gi|332275826|gb|EGJ21141.1| Holliday junction resolvase-like protein [Rhodobacter sphaeroides
WS8N]
gi|428190635|gb|EKX59181.1| Putative Holliday junction resolvase YggF [Rhodobacter sp. AKP1]
Length = 160
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 6/141 (4%)
Query: 20 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFI 79
+ G GLD+G K VG+++SD +IA+PL + R K T D A +++ +E L G +
Sbjct: 15 RTGALAGLDLGTKTVGVAVSDGLRRIATPLLTVRRTKFTED--AAKLKAIAAERRLVGIV 72
Query: 80 VGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
+G P N + Q + F +L ++ + +W+E ++ E L D
Sbjct: 73 LGLPRNMDGSEGPRAQSTRAFARNLV---QVLPLPVGFWDERLSTVAAERALLEADTSRK 129
Query: 139 EYKTILDKFAAVGILQEYLDN 159
++D AA ILQ LD
Sbjct: 130 RRAEVIDHVAAGYILQGVLDR 150
>gi|16079793|ref|NP_390617.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
subtilis str. 168]
gi|221310675|ref|ZP_03592522.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
subtilis str. 168]
gi|221314998|ref|ZP_03596803.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221319919|ref|ZP_03601213.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221324200|ref|ZP_03605494.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
subtilis str. SMY]
gi|321312264|ref|YP_004204551.1| Holliday junction resolvase-like protein [Bacillus subtilis BSn5]
gi|384176315|ref|YP_005557700.1| hypothetical protein I33_2781 [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
gi|386759293|ref|YP_006232509.1| Holliday junction resolvase-like protein [Bacillus sp. JS]
gi|402776891|ref|YP_006630835.1| Holliday junction resolvase [Bacillus subtilis QB928]
gi|418032086|ref|ZP_12670569.1| holliday junction resolvase-like protein [Bacillus subtilis subsp.
subtilis str. SC-8]
gi|428280187|ref|YP_005561922.1| holliday junction resolvase-like protein [Bacillus subtilis subsp.
natto BEST195]
gi|430755873|ref|YP_007208756.1| holliday junction resolvase [Bacillus subtilis subsp. subtilis str.
BSP1]
gi|449095178|ref|YP_007427669.1| Holliday junction resolvase-like protein [Bacillus subtilis XF-1]
gi|452915376|ref|ZP_21964002.1| putative Holliday junction resolvase [Bacillus subtilis MB73/2]
gi|6226496|sp|O34634.1|RUVX_BACSU RecName: Full=Putative Holliday junction resolvase
gi|2635185|emb|CAB14681.1| putative Holliday junction resolvase [Bacillus subtilis subsp.
subtilis str. 168]
gi|291485144|dbj|BAI86219.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
natto BEST195]
gi|320018538|gb|ADV93524.1| Holliday junction resolvase-like protein [Bacillus subtilis BSn5]
gi|349595539|gb|AEP91726.1| conserved hypothetical protein [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
gi|351470949|gb|EHA31070.1| holliday junction resolvase-like protein [Bacillus subtilis subsp.
subtilis str. SC-8]
gi|384932575|gb|AFI29253.1| Holliday junction resolvase-like protein [Bacillus sp. JS]
gi|402482071|gb|AFQ58580.1| Putative Holliday junction resolvase [Bacillus subtilis QB928]
gi|407959930|dbj|BAM53170.1| Holliday junction resolvase-like protein [Bacillus subtilis
BEST7613]
gi|407965573|dbj|BAM58812.1| Holliday junction resolvase-like protein [Bacillus subtilis
BEST7003]
gi|430020393|gb|AGA20999.1| Holliday junction resolvase [Bacillus subtilis subsp. subtilis str.
BSP1]
gi|449029093|gb|AGE64332.1| Holliday junction resolvase-like protein [Bacillus subtilis XF-1]
gi|452115724|gb|EME06120.1| putative Holliday junction resolvase [Bacillus subtilis MB73/2]
Length = 138
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 8/142 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD+G K +G+++SD A + + + D LI ++ ++ ++G+
Sbjct: 2 RILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLSRLSELIKDYTIDKIVLGF 61
Query: 83 PFNRQQNAA---DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
P N +A Q F L T ++ W+E T+ E +L D+ +
Sbjct: 62 PKNMNGTVGPRGEASQT--FAKVLETTY---NVPVVLWDERLTTMAAEKMLIAADVSRQK 116
Query: 140 YKTILDKFAAVGILQEYLDNAN 161
K ++DK AAV ILQ YLD+ N
Sbjct: 117 RKKVIDKMAAVMILQGYLDSLN 138
>gi|406658837|ref|ZP_11066977.1| crossover junction endodeoxyribonuclease [Streptococcus iniae 9117]
gi|405579052|gb|EKB53166.1| crossover junction endodeoxyribonuclease [Streptococcus iniae 9117]
Length = 136
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 9/138 (6%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLDVG K VG++ISDP A L ++ ++ + E L+ + ++ F+VG P
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEDKEEFGFERLGELVKAYKVDTFVVGLPK 60
Query: 85 NRQQNAADAVQVKLFIDDLSATKKLEDM---KYAYWNEGFTSKGVE-LLLNPLDLHPVEY 140
N + V+ + +K+E++ Y +E T+ E +L+ D+ +
Sbjct: 61 NMNNTSGPRVEA-----SQAYGQKIEELFKIPVKYQDERLTTVQAERMLIEQADISRGKR 115
Query: 141 KTILDKFAAVGILQEYLD 158
K ++DK AA ILQ YLD
Sbjct: 116 KKVIDKLAAQLILQNYLD 133
>gi|118597211|sp|Q28QB4.2|RUVX_JANSC RecName: Full=Putative Holliday junction resolvase
Length = 160
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 3/136 (2%)
Query: 24 FLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYP 83
+GLD+G K +G+++SD AS L + RKK +D A+ LI++ + G I+G P
Sbjct: 19 LIGLDLGTKTIGVALSDRLLTSASALETVKRKKFGVD--ADALAGLIAKHEVGGIILGLP 76
Query: 84 FNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
N + Q + F +LS + +W+E ++ E L D
Sbjct: 77 RNMDGSEGPRAQATRAFALNLSRRGDFAHLALGFWDERLSTVAAERALIAADTSRKRRSE 136
Query: 143 ILDKFAAVGILQEYLD 158
++D AA ILQ LD
Sbjct: 137 VIDAVAASYILQGALD 152
>gi|218672210|ref|ZP_03521879.1| Holliday junction resolvase YqgF [Rhizobium etli GR56]
Length = 121
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 6/106 (5%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+G K +GLS+SD + A+P V+ R K TID A+ + + GF++G P N
Sbjct: 21 GLDLGTKTIGLSMSDLGRRFATPRPVIRRVKFTID--AQALMDFAATEKVAGFVIGLPIN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLL 130
+A VQ + F+ ++ L + YW+E ++ E L
Sbjct: 79 MDGSAGPRVQATRAFVRNMEQKTAL---PFVYWDERLSTVAAERTL 121
>gi|254454337|ref|ZP_05067774.1| conserved hypothetical protein TIGR00250 [Octadecabacter arcticus
238]
gi|198268743|gb|EDY93013.1| conserved hypothetical protein TIGR00250 [Octadecabacter arcticus
238]
Length = 158
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 66/144 (45%), Gaps = 9/144 (6%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+G K +G+++ D IASPL + R K D A + + + G ++G P N
Sbjct: 21 GLDLGTKTIGVAVCDGGLIIASPLETIKRSKFQAD--ATRLFEITAHREVAGIVLGLPRN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
+ Q + F +LS +L D+ YW+E ++ E L D ++
Sbjct: 79 MDGSEGPRAQSTRAFARNLS---RLSDLPITYWDERLSTVAAERALLEADTSRKRRAEVI 135
Query: 145 DKFAAVGILQEYLDNANRKVNLKA 168
D AA ILQ LD R N+KA
Sbjct: 136 DNIAASIILQGLLD---RLRNIKA 156
>gi|428315916|ref|YP_007113798.1| Holliday junction resolvase [Oscillatoria nigro-viridis PCC 7112]
gi|428239596|gb|AFZ05382.1| Holliday junction resolvase [Oscillatoria nigro-viridis PCC 7112]
Length = 152
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 77/145 (53%), Gaps = 8/145 (5%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
LGLD+G K VG++ D IA+ ++ L+R ++ D R L+ E ++ + G P+
Sbjct: 11 LGLDIGLKRVGIAGCDGTGLIATGITTLVR--SSFDRDVAYLRELVRERRVQILVAGLPY 68
Query: 85 N-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143
+ + A A QV+ + + ++ + LE + Y +E TS E L+ + P + K
Sbjct: 69 SLSGELGAQARQVQKYANRIA--RALE-IPLEYVDERLTSVEAEELMKTQGISPSQNKGA 125
Query: 144 LDKFAAVGILQEYLDNANRKVNLKA 168
+D+ AA ILQ++LD R+ N+ A
Sbjct: 126 IDRKAAALILQQWLD--ERRQNISA 148
>gi|21911333|ref|NP_665601.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS315]
gi|383480755|ref|YP_005389649.1| putative Holliday junction resolvase [Streptococcus pyogenes
MGAS15252]
gi|383494736|ref|YP_005412412.1| putative Holliday junction resolvase [Streptococcus pyogenes
MGAS1882]
gi|386363565|ref|YP_006072896.1| putative Holliday junction resolvase [Streptococcus pyogenes
Alab49]
gi|421891847|ref|ZP_16322592.1| Putative Holliday junction resolvase YggF [Streptococcus pyogenes
NS88.2]
gi|21905548|gb|AAM80404.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
gi|350277974|gb|AEQ25342.1| putative Holliday junction resolvase [Streptococcus pyogenes
Alab49]
gi|378928745|gb|AFC66951.1| putative Holliday junction resolvase [Streptococcus pyogenes
MGAS15252]
gi|378930463|gb|AFC68880.1| putative Holliday junction resolvase [Streptococcus pyogenes
MGAS1882]
gi|379982391|emb|CCG26314.1| Putative Holliday junction resolvase YggF [Streptococcus pyogenes
NS88.2]
Length = 136
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 3/135 (2%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLDVG K VG++ISDP A L ++ + + L+ ++ +E F++G P
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQYQVEQFVIGLPK 60
Query: 85 NRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYKTI 143
N N + +V I + + L + Y +E T+ E +L+ D+ + K +
Sbjct: 61 N--MNNTNGPRVDASITYGNHIEHLFGLPVHYQDERLTTVEAERMLIEQADISRGKRKKV 118
Query: 144 LDKFAAVGILQEYLD 158
+DK AA ILQ YL+
Sbjct: 119 IDKLAAQLILQNYLN 133
>gi|410668022|ref|YP_006920393.1| holliday junction resolvase [Thermacetogenium phaeum DSM 12270]
gi|409105769|gb|AFV11894.1| holliday junction resolvase [Thermacetogenium phaeum DSM 12270]
Length = 142
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 4/136 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LG+D+G K +G++ISD A L L R DL E SL+ E+ + ++GY
Sbjct: 2 RVLGIDMGQKRIGIAISDEMGITAQALKTLERIGAEADL--EAICSLVREYGVTEIVIGY 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P R N + + +K + +W+E T+ E L ++ +
Sbjct: 60 P--RNLNGTPGRHAEEYAAFGRELQKKSGVPVCFWDERLTTVAAEKALLEGNMERRRRRR 117
Query: 143 ILDKFAAVGILQEYLD 158
++D+ AA +L+ YL+
Sbjct: 118 VIDRVAACLLLESYLN 133
>gi|300022168|ref|YP_003754779.1| Holliday junction resolvase YqgF [Hyphomicrobium denitrificans ATCC
51888]
gi|299523989|gb|ADJ22458.1| Holliday junction resolvase YqgF [Hyphomicrobium denitrificans ATCC
51888]
Length = 166
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 65/143 (45%), Gaps = 6/143 (4%)
Query: 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 81
GR +G+D G K +GL++SD IAS L + R K T A +L +E + G ++G
Sbjct: 28 GRLIGIDGGTKTLGLALSDVTRTIASALETIRRTKFTA--DAARLLALATEHGVTGLVLG 85
Query: 82 YPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
P N Q + +L+ KL + W+E T+ E +L D
Sbjct: 86 LPRNLDGTEGPRAQATRALARNLN---KLSPLPILLWDERLTTAEAERMLIDADQSRKRR 142
Query: 141 KTILDKFAAVGILQEYLDNANRK 163
++DK AA ILQ LD R+
Sbjct: 143 GEVIDKLAATIILQSALDRLGRQ 165
>gi|304407567|ref|ZP_07389219.1| Holliday junction resolvase YqgF [Paenibacillus curdlanolyticus
YK9]
gi|304343518|gb|EFM09360.1| Holliday junction resolvase YqgF [Paenibacillus curdlanolyticus
YK9]
Length = 138
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 72/142 (50%), Gaps = 6/142 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLD GD+ +G+++SD A V+ R+ N + ++ L+ + + +VG
Sbjct: 2 RIMGLDYGDRNIGVAVSDAFGWTAQGTGVVQRRHNRGEF--DEIAQLVKDHEVTEIVVGL 59
Query: 83 PFNRQQNAADAVQVKL-FIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + ++ + F ++L +KL ++ W+E T+ E L D+ + K
Sbjct: 60 PKNMNGSVGPRGEICIAFAEELQ--QKL-NLPVHLWDERLTTVSAERTLLEADVSRKKRK 116
Query: 142 TILDKFAAVGILQEYLDNANRK 163
++DK AA ILQ YLD+ ++
Sbjct: 117 LVVDKLAATFILQNYLDSKAKR 138
>gi|254485728|ref|ZP_05098933.1| conserved hypothetical protein TIGR00250 [Roseobacter sp. GAI101]
gi|214042597|gb|EEB83235.1| conserved hypothetical protein TIGR00250 [Roseobacter sp. GAI101]
Length = 161
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 6/136 (4%)
Query: 24 FLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYP 83
+GLD+G+K +G++++D +A+PL + RKK +D A +I++ + G I+G P
Sbjct: 19 LIGLDLGEKTIGVAVTDSFLSVATPLETVRRKKFGLD--AALLTQIIADRRIGGVILGLP 76
Query: 84 FNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
N + Q + F + KL D+ +W+E ++ E L D
Sbjct: 77 RNMDGSEGPRCQSTRAFARNFD---KLVDLPIGFWDERLSTVAAEKALLEADTSRKRRAE 133
Query: 143 ILDKFAAVGILQEYLD 158
++D AA ILQ LD
Sbjct: 134 VIDHVAASYILQGVLD 149
>gi|17230592|ref|NP_487140.1| Holliday junction resolvase-like protein [Nostoc sp. PCC 7120]
gi|75910008|ref|YP_324304.1| Holliday junction resolvase-like protein [Anabaena variabilis ATCC
29413]
gi|32130049|sp|Q8YSI5.1|RUVX_ANASP RecName: Full=Putative Holliday junction resolvase
gi|146325551|sp|Q3M6H7.1|RUVX_ANAVT RecName: Full=Putative Holliday junction resolvase
gi|17132194|dbj|BAB74799.1| alr3100 [Nostoc sp. PCC 7120]
gi|75703733|gb|ABA23409.1| Holliday junction resolvase YqgF [Anabaena variabilis ATCC 29413]
Length = 151
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 79/147 (53%), Gaps = 8/147 (5%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
LGLDVG K VG++ D IA+ ++ + ++ + D + +++++E ++ +VG P+
Sbjct: 8 LGLDVGRKRVGVAGCDRTGLIATGITTV--ERTSFDRDVQQIQNIVNERQVQVLVVGLPY 65
Query: 85 NRQQNAA-DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143
+ + A QV+ F L+ K + Y +E TS E +L ++ P K +
Sbjct: 66 SMDGSLGFQARQVQKFTSRLA---KALQLPVEYVDERLTSFQAEQMLIAENVSPSRNKGL 122
Query: 144 LDKFAAVGILQEYLDNANRKVNLKANV 170
+D+ AA ILQ++LD R+ N +++V
Sbjct: 123 IDRKAAALILQQWLD--IRRTNAQSSV 147
>gi|302391206|ref|YP_003827026.1| Holliday junction resolvase YqgF [Acetohalobium arabaticum DSM
5501]
gi|302203283|gb|ADL11961.1| Holliday junction resolvase YqgF [Acetohalobium arabaticum DSM
5501]
Length = 138
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 4/136 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD GDK +G + SD A V+ + + + + + SLI ++++ +VG
Sbjct: 3 RILGLDFGDKRIGAATSDALGWTAQGKKVI--QNTSWEEVVAEINSLIEQYDVGKVVVGL 60
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N N + + +D + K+ + W+E ++ E L D+ + K
Sbjct: 61 PKN--MNGTLGPRAEKTLDFVEQLKEEIEPPIITWDERLSTAAAERTLLKADVSRAKRKD 118
Query: 143 ILDKFAAVGILQEYLD 158
++DK AAV ILQ YLD
Sbjct: 119 VIDKMAAVVILQSYLD 134
>gi|354582082|ref|ZP_09000984.1| Holliday junction resolvase YqgF [Paenibacillus lactis 154]
gi|353199481|gb|EHB64943.1| Holliday junction resolvase YqgF [Paenibacillus lactis 154]
Length = 137
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 8/139 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDL--MAEDFRSLISEFNLEGFIV 80
R +GLD GD+ +G+++SD A L V+ R+++ +L +AE L+ E + +V
Sbjct: 3 RIMGLDYGDRRIGIALSDVFGWTAQGLEVVERRRDGSELNRIAE----LVKEHEVGEIVV 58
Query: 81 GYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
G P N N + ++ ++ + D+ W+E ++ E L D+ +
Sbjct: 59 GLPKN--MNGTIGPRGEICMEFAGTLRDSLDLPVHLWDERLSTVSAERTLLEADVSRKKR 116
Query: 141 KTILDKFAAVGILQEYLDN 159
K ++DK AA ILQ YLD+
Sbjct: 117 KQVVDKMAASLILQNYLDS 135
>gi|416401024|ref|ZP_11687140.1| Putative Holliday junction resolvase [Crocosphaera watsonii WH
0003]
gi|357262164|gb|EHJ11346.1| Putative Holliday junction resolvase [Crocosphaera watsonii WH
0003]
Length = 143
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 71/136 (52%), Gaps = 6/136 (4%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
LGLDVG K +G++ D IA+ L+ + RK D+ + ++L++E +++ +VG P+
Sbjct: 7 LGLDVGKKRIGVAGCDGTGLIATGLTTIERKSFPQDV--QQLQALVTERDVQLLVVGLPY 64
Query: 85 NRQQNAA-DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143
+ A QV+ F +S K LE + Y +E TS E L + K +
Sbjct: 65 CMDGSIGFQAKQVQKFAKRIS--KALE-LPVEYMDERLTSVEAETHLKAQKKYSRHNKGL 121
Query: 144 LDKFAAVGILQEYLDN 159
+D+ AA ILQ++LD
Sbjct: 122 VDRLAATIILQQWLDQ 137
>gi|332186801|ref|ZP_08388543.1| uncharacterized family protein [Sphingomonas sp. S17]
gi|332013134|gb|EGI55197.1| uncharacterized family protein [Sphingomonas sp. S17]
Length = 154
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 10/139 (7%)
Query: 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 81
GR +GLDVG K +G ++ D ASP +++ R K T D E ++I++ ++G ++G
Sbjct: 19 GRLIGLDVGTKTIGTALCDAGWSFASPATLVRRTKFTKD--KEALIAMIAQQGVKGLVIG 76
Query: 82 YPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMK-YAYWNEGFTSKGVELLLNPLDLHPVE 139
P N + + Q + F + D+ W+E +++ VE + D+ +
Sbjct: 77 LPLNLDGSESPRSQSTRAF------ARNCADLGPILLWDERWSTVAVERTMIEQDMSRAK 130
Query: 140 YKTILDKFAAVGILQEYLD 158
+D AA ILQ +D
Sbjct: 131 RAERIDNLAAAHILQAAID 149
>gi|51893132|ref|YP_075823.1| hypothetical protein STH1994 [Symbiobacterium thermophilum IAM
14863]
gi|62900963|sp|Q67MW4.1|RUVX_SYMTH RecName: Full=Putative Holliday junction resolvase
gi|51856821|dbj|BAD40979.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
14863]
Length = 144
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 6/137 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R GLDVG+K +G+++SD A L V+ R+ DL D + + + ++VG
Sbjct: 2 RIGGLDVGEKTIGVALSDELGLTAQALEVIRRRSLEQDLARLD--EIARHYGVVRWVVGM 59
Query: 83 PFNRQQNAADAVQV-KLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N ++ + F++ L+ L W+E ++ E +L D+ +
Sbjct: 60 PRNMNGTYGPRAELTRAFMERLAGHSGL---PVEAWDERLSTMAAERVLLEADVSRARRR 116
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 117 KVIDKMAAAVILQGYLD 133
>gi|335035049|ref|ZP_08528392.1| hypothetical protein AGRO_2375 [Agrobacterium sp. ATCC 31749]
gi|333793480|gb|EGL64834.1| hypothetical protein AGRO_2375 [Agrobacterium sp. ATCC 31749]
Length = 159
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 6/135 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+G K +GL++SD + A+P V+ R K T D A+ + + + F++G P N
Sbjct: 21 GLDLGTKTIGLAMSDLSRRFATPRPVIKRVKFTQD--AQMLLAFAEKEKVAAFVIGLPIN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
+A Q + F+ + L + YW+E ++ E L +D+ + +
Sbjct: 79 MDGSAGPRAQATRAFVRTMGEKTAL---PFIYWDERLSTVAAERALLEMDVSRAKRAERI 135
Query: 145 DKFAAVGILQEYLDN 159
D AA ILQ LD
Sbjct: 136 DSAAASFILQGALDR 150
>gi|402571516|ref|YP_006620859.1| RNAse H-fold protein YqgF [Desulfosporosinus meridiei DSM 13257]
gi|402252713|gb|AFQ42988.1| RNAse H-fold protein YqgF [Desulfosporosinus meridiei DSM 13257]
Length = 138
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 6/141 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLD G K +G++ISD A + + R +D + E LI E+ + +GY
Sbjct: 2 RIMGLDFGSKTIGVAISDALFWTAQGIKTIRRSNKELDELEE----LIREYEVMEIALGY 57
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N N + L + + ++ W+E ++ + L D+ + K
Sbjct: 58 PKN--MNGTIGPRCTLTEEFAEVLRSKFGLEVKLWDERLSTVAAQRTLLEADMSRSKRKN 115
Query: 143 ILDKFAAVGILQEYLDNANRK 163
++DK AAV ILQ YLD+ K
Sbjct: 116 VIDKMAAVFILQGYLDSRQMK 136
>gi|15888641|ref|NP_354322.1| conserved hypothetical protein [Agrobacterium fabrum str. C58]
gi|32130043|sp|Q8UFT1.1|RUVX_AGRT5 RecName: Full=Putative Holliday junction resolvase
gi|15156369|gb|AAK87107.1| conserved hypothetical protein [Agrobacterium fabrum str. C58]
Length = 159
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 6/135 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+G K +GL++SD + A+P V+ R K T D A+ + + + F++G P N
Sbjct: 21 GLDLGTKTIGLAMSDLSRRFATPRPVIKRVKFTQD--AQVLLAFAEKEKVAAFVIGLPIN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
+A Q + F+ + L + YW+E ++ E L +D+ + +
Sbjct: 79 MDGSAGPRAQATRAFVRTMGEKTAL---PFIYWDERLSTVAAERALLEMDVSRAKRAERI 135
Query: 145 DKFAAVGILQEYLDN 159
D AA ILQ LD
Sbjct: 136 DSAAASFILQGALDR 150
>gi|332686781|ref|YP_004456555.1| holliday junction resolvase [Melissococcus plutonius ATCC 35311]
gi|379727216|ref|YP_005319401.1| putative holliday junction resolvase [Melissococcus plutonius
DAT561]
gi|332370790|dbj|BAK21746.1| putative holliday junction resolvase [Melissococcus plutonius ATCC
35311]
gi|376318119|dbj|BAL61906.1| putative holliday junction resolvase [Melissococcus plutonius
DAT561]
Length = 140
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 3/142 (2%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLDVG K VG+++SD A + ++ + + L E+ + F++G P
Sbjct: 1 MGLDVGSKTVGVAVSDLLGWTAQGIEIIRINEEKGQFGFDRLEELAEEYEITKFVIGLPK 60
Query: 85 NRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYKTI 143
N + + L + ++L + Y +E T+ E +L+ D + K +
Sbjct: 61 NMNNSIGPRAEASLAFGE--KLQELFQLPVVYQDERLTTVQAERMLIEQADTSRAKRKKV 118
Query: 144 LDKFAAVGILQEYLDNANRKVN 165
+DK AAV ILQ YLD+ + N
Sbjct: 119 IDKLAAVMILQNYLDSQKHRAN 140
>gi|260438499|ref|ZP_05792315.1| putative holliday junction resolvase [Butyrivibrio crossotus DSM
2876]
gi|292809088|gb|EFF68293.1| putative holliday junction resolvase [Butyrivibrio crossotus DSM
2876]
Length = 144
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 3/138 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRK-KNTIDLMAEDFRSLISEFNLEGFIVG 81
R +GLD G + VG+++ DP A + ++ RK +N + L +E+N E ++G
Sbjct: 2 RIIGLDFGSRTVGVAVCDPLMITAQGVEIIRRKEENKLRQTYARIEELCAEYNAERIVLG 61
Query: 82 YPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + D +V +D +A ++ ++ W+E T+ + + + K
Sbjct: 62 LPKNMNNTSGD--RVDKTMDFKAALERRTGLEVVMWDERLTTVAADNAMMEAGIRRENRK 119
Query: 142 TILDKFAAVGILQEYLDN 159
+D AA ILQ YLD+
Sbjct: 120 EYVDMIAAQLILQGYLDS 137
>gi|421490151|ref|ZP_15937525.1| RNAse H domain protein, YqgF family [Streptococcus anginosus
SK1138]
gi|400373556|gb|EJP26484.1| RNAse H domain protein, YqgF family [Streptococcus anginosus
SK1138]
Length = 136
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 3/135 (2%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLDVG K VG+++SDP A L ++ + + + L+ E+ ++ F+VG P
Sbjct: 1 MGLDVGSKTVGVAVSDPLGFTAQGLEIIPIDEEKGEFGFDRLSELVKEYKVDKFVVGLPK 60
Query: 85 NRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYKTI 143
N + V+ ++L + Y +E T+ E +L+ D+ + K +
Sbjct: 61 NMNNTSGPRVEASQAYG--GRLEQLFQLPVDYQDERLTTVAAERMLIEQADVSRKKRKKV 118
Query: 144 LDKFAAVGILQEYLD 158
+DK AA ILQ YLD
Sbjct: 119 IDKLAAQLILQNYLD 133
>gi|17989017|ref|NP_541650.1| Holliday junction resolvase-like protein [Brucella melitensis bv. 1
str. 16M]
gi|148558591|ref|YP_001257584.1| Holliday junction resolvase-like protein [Brucella ovis ATCC 25840]
gi|260564689|ref|ZP_05835174.1| ribonuclease RNase [Brucella melitensis bv. 1 str. 16M]
gi|265989912|ref|ZP_06102469.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|32130048|sp|Q8YC60.1|RUVX_BRUME RecName: Full=Putative Holliday junction resolvase
gi|167012699|sp|A5VUS9.1|RUVX_BRUO2 RecName: Full=Putative Holliday junction resolvase
gi|17984856|gb|AAL53914.1| DNA integration/recombination/invertion protein [Brucella
melitensis bv. 1 str. 16M]
gi|148369876|gb|ABQ62748.1| conserved hypothetical protein TIGR00250 [Brucella ovis ATCC 25840]
gi|260152332|gb|EEW87425.1| ribonuclease RNase [Brucella melitensis bv. 1 str. 16M]
gi|263000581|gb|EEZ13271.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
Rev.1]
Length = 162
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 6/134 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+G K +GL++SD A P V+ R K TID A+ + + ++G P N
Sbjct: 21 GLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFTID--AQVLLKALETDKVGVIVIGLPMN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
A VQ + F+ + + L D+ + +W+E ++ VE L +D+ + +
Sbjct: 79 MDGTAGPRVQATRAFVRTM---QPLTDLPFVFWDERLSTVAVERALIGMDVSRGKRADRI 135
Query: 145 DKFAAVGILQEYLD 158
D AA ILQ LD
Sbjct: 136 DSAAAAFILQGALD 149
>gi|282896769|ref|ZP_06304775.1| Holliday junction resolvase YqgF [Raphidiopsis brookii D9]
gi|281198178|gb|EFA73068.1| Holliday junction resolvase YqgF [Raphidiopsis brookii D9]
Length = 158
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 74/136 (54%), Gaps = 6/136 (4%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
LGLDVG K VG++ D IA+ ++ + RK DL ++ + L+ + ++ +VG P+
Sbjct: 13 LGLDVGSKRVGVAGCDGTGLIATGITTIQRKSFVEDL--QEIQGLVEKRRVQILVVGIPY 70
Query: 85 NRQQNAAD-AVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143
+R + + A +++ F + L+ T L Y +E TS E +L + P + +
Sbjct: 71 SRDGSIGEQARRIQKFANRLAKTLGL---PVEYVDERLTSFQAEQMLLAENRSPSYNRGL 127
Query: 144 LDKFAAVGILQEYLDN 159
+D+ AA ILQ++LD+
Sbjct: 128 VDRKAASIILQQWLDD 143
>gi|296120376|ref|YP_003628154.1| Holliday junction resolvase YqgF [Planctomyces limnophilus DSM
3776]
gi|296012716|gb|ADG65955.1| Holliday junction resolvase YqgF [Planctomyces limnophilus DSM
3776]
Length = 199
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 62/112 (55%), Gaps = 6/112 (5%)
Query: 20 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFI 79
+ G LG+D G K VGL+IS + +A P+ + RK ++D E F++ ++ + G +
Sbjct: 25 REGCLLGVDYGQKRVGLAISTFEQTLAMPMEIYQRKSESVDR--EWFKATCLDYRVAGLV 82
Query: 80 VGYPFNRQQNAAD-AVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLL 130
VG P + ++ + +V+ F + L+ + ++ +W+E +TS ELL+
Sbjct: 83 VGLPLHTSGEESELSREVRQFGEWLA---RCTNLPLRFWDERYTSVSAELLM 131
>gi|392330216|ref|ZP_10274832.1| Holliday junction resolvase-like protein [Streptococcus canis FSL
Z3-227]
gi|391420088|gb|EIQ82899.1| Holliday junction resolvase-like protein [Streptococcus canis FSL
Z3-227]
Length = 136
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 3/135 (2%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLDVG K VG++ISDP A L ++ + + E L+ ++ +E F+VG P
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIEIDEEKEEFGFERLGELVKQYQVEQFVVGLPK 60
Query: 85 NRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYKTI 143
N + V D ++L + Y +E T+ E +L+ D+ + K +
Sbjct: 61 NMNNTSGPRVDASEAYGD--KLEQLFALPVHYQDERLTTVEAERMLIEQADISRGKRKKV 118
Query: 144 LDKFAAVGILQEYLD 158
+DK AA ILQ YLD
Sbjct: 119 IDKLAAQLILQNYLD 133
>gi|116514509|ref|YP_813415.1| Holliday junction resolvase-like protein [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
gi|418029385|ref|ZP_12667928.1| Hydrolase acting on ester bonds [Lactobacillus delbrueckii subsp.
bulgaricus CNCM I-1632]
gi|418036211|ref|ZP_12674641.1| Hydrolase acting on ester bonds [Lactobacillus delbrueckii subsp.
bulgaricus CNCM I-1519]
gi|122274759|sp|Q048Z5.1|RUVX_LACDB RecName: Full=Putative Holliday junction resolvase
gi|116093824|gb|ABJ58977.1| RNase H-like ribonuclease [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|354688560|gb|EHE88597.1| Hydrolase acting on ester bonds [Lactobacillus delbrueckii subsp.
bulgaricus CNCM I-1519]
gi|354690060|gb|EHE90017.1| Hydrolase acting on ester bonds [Lactobacillus delbrueckii subsp.
bulgaricus CNCM I-1632]
Length = 142
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 10/141 (7%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K +G+++SDP A + + ++ + + L+ E+ GF++G
Sbjct: 2 RLLGLDVGSKTIGVAVSDPLGITAQAVMTIPIDEDRHNFGMRSLKKLVREYEANGFVLGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTSKGVE-LLLNPLDLHP- 137
P N A +V + ++LE + Y +E T+ E +L+ +H
Sbjct: 62 PKNMDGTAGRSVS-----RSKAMGERLEQKFGLPVYYDDERLTTVASERILVEEAGMHDR 116
Query: 138 VEYKTILDKFAAVGILQEYLD 158
+ K ++D+ AAV ILQ YLD
Sbjct: 117 RQRKEVVDQMAAVLILQNYLD 137
>gi|418567153|ref|ZP_13131518.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21272]
gi|418886881|ref|ZP_13441028.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIG1150]
gi|371982857|gb|EHP00006.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21272]
gi|377724383|gb|EHT48499.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIG1150]
Length = 142
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 67/144 (46%), Gaps = 15/144 (10%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
+ LGLDVG + VG++ISD A L L + +L E +I + N+ ++G
Sbjct: 5 KILGLDVGSRTVGIAISDIMGWTAQGLDTLRINEENNELGIEQLVDIIKKHNVGTVVIGL 64
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAY-------WNEGFTSKGVELLLNPLDL 135
P N + F + S T K E + AY W+E ++ E L D+
Sbjct: 65 PKNMNNSIG-------FRGEASLTYK-EKLLEAYPSIEIVMWDERLSTMAAERSLLEADV 116
Query: 136 HPVEYKTILDKFAAVGILQEYLDN 159
+ K ++DK AAV ILQ YLD+
Sbjct: 117 SRQKRKQVIDKMAAVFILQGYLDS 140
>gi|379007281|ref|YP_005256732.1| Holliday junction resolvase [Sulfobacillus acidophilus DSM 10332]
gi|361053543|gb|AEW05060.1| Holliday junction resolvase [Sulfobacillus acidophilus DSM 10332]
Length = 248
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 4/136 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVGDK++G ++SD IA L + R+ D+ + L+ ++ + +VG
Sbjct: 4 RIMGLDVGDKWIGTAVSDELGMIARSLDPIRRRGLPQDVA--EVVKLLRAWDADTIVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N N Q + + A +K W+E T++ E +L ++ K
Sbjct: 62 PLN--MNGTVGPQAEKVLQFQRALEKKSVATVISWDERLTTRQAERILLEGNMRRERRKE 119
Query: 143 ILDKFAAVGILQEYLD 158
++D AA ILQ YLD
Sbjct: 120 LVDGVAAALILQAYLD 135
>gi|320109161|ref|YP_004184751.1| Holliday junction resolvase YqgF [Terriglobus saanensis SP1PR4]
gi|319927682|gb|ADV84757.1| Holliday junction resolvase YqgF [Terriglobus saanensis SP1PR4]
Length = 157
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 12/140 (8%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRS---LISEFNLEGFI 79
R +GLD+GD+ +G++ISD A P+ L R ED RS L + +
Sbjct: 13 RIMGLDIGDRRIGVAISDGLGLTAQPVFTLHRSNPR-----EDIRSIARLTRKHEATAIV 67
Query: 80 VGYPFNRQQN-AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
G P + + + A + + F +L+ K + +W+E TS +L+
Sbjct: 68 AGLPLHMSGDLSPQAQKSQAFAQELA---KRTGLPLYFWDERLTSHAAHEILDVSGFGTT 124
Query: 139 EYKTILDKFAAVGILQEYLD 158
K ++D+ AAV ILQ +LD
Sbjct: 125 GRKAVIDQVAAVLILQGFLD 144
>gi|213966117|ref|ZP_03394304.1| conserved hypothetical protein [Corynebacterium amycolatum SK46]
gi|213951215|gb|EEB62610.1| conserved hypothetical protein [Corynebacterium amycolatum SK46]
Length = 167
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 69/149 (46%), Gaps = 17/149 (11%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLI---SEFNLEG 77
RGR LG+DVGD VG+++SDP +A+P+ + R D D L+ +E +
Sbjct: 16 RGRRLGIDVGDVRVGVAVSDPDCILATPVETVTRATGRKDPDGPDIDRLVELATELEVVE 75
Query: 78 FIVGYP------FNRQQNAADAVQVKLFIDDLSATKKLED-MKYAYWNEGFTSKGVELLL 130
+VG P F A V +L ++L D + Y +E T+ + L
Sbjct: 76 IVVGMPLMLDGSFGTSARKATDVGFRL-------QRRLGDRVVVHYADERMTTVMAQSRL 128
Query: 131 NPLDLHPVEYKTILDKFAAVGILQEYLDN 159
+ + + I+D+ AAV ILQ +LD
Sbjct: 129 HAAGIDVKSGRKIIDQAAAVEILQSWLDR 157
>gi|116510965|ref|YP_808181.1| Holliday junction resolvase-like protein [Lactococcus lactis subsp.
cremoris SK11]
gi|385837142|ref|YP_005874772.1| Putative Holliday junction resolvase [Lactococcus lactis subsp.
cremoris A76]
gi|414073438|ref|YP_006998655.1| Holliday junction resolvase-like protein [Lactococcus lactis subsp.
cremoris UC509.9]
gi|123125957|sp|Q032W3.1|RUVX_LACLS RecName: Full=Putative Holliday junction resolvase
gi|116106619|gb|ABJ71759.1| RNase H-like ribonuclease [Lactococcus lactis subsp. cremoris SK11]
gi|358748370|gb|AEU39349.1| Putative Holliday junction resolvase [Lactococcus lactis subsp.
cremoris A76]
gi|413973358|gb|AFW90822.1| Holliday junction resolvase-like protein [Lactococcus lactis subsp.
cremoris UC509.9]
Length = 143
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 2/136 (1%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K VG+S+SD A P+ + +L + LI E+ E ++G
Sbjct: 4 RILGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFDRLAVLIKEYKPEKVVLGL 63
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P + N + ++ + D + ++ AY +E T+ E +L + + K
Sbjct: 64 P--KHMNGDEGIRAEASRDYGTKLANEFSLEVAYQDERLTTAQAEKVLIDGGVRRKDRKK 121
Query: 143 ILDKFAAVGILQEYLD 158
+DK AAV ILQ YLD
Sbjct: 122 SIDKLAAVLILQNYLD 137
>gi|260881084|ref|ZP_05403565.2| putative holliday junction resolvase [Mitsuokella multacida DSM
20544]
gi|260849464|gb|EEX69471.1| putative holliday junction resolvase [Mitsuokella multacida DSM
20544]
Length = 138
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 5/138 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R++ LD+GD+ +G+++SD A + + RK DL + L+ + + + G
Sbjct: 3 RYMSLDIGDRTIGIAVSDLLGLTAQGVETIRRKSLADDL--KRLGELMQAYETKSLVSGL 60
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N D VK F+ ++ K D++ +W+E ++ L D+ + K
Sbjct: 61 PKNMDGTEGDRCAIVKEFMAEVK--KAYPDVEVFFWDERLSTVAATRSLIEADVSRRKRK 118
Query: 142 TILDKFAAVGILQEYLDN 159
++DK AAV ILQ +LD+
Sbjct: 119 KVIDKMAAVFILQGFLDS 136
>gi|186680854|ref|YP_001864050.1| Holliday junction resolvase-like protein [Nostoc punctiforme PCC
73102]
gi|186463306|gb|ACC79107.1| Holliday junction resolvase YqgF [Nostoc punctiforme PCC 73102]
Length = 158
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 6/135 (4%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
LGLD G K +G++ D IA+ ++ + R D+ E R +++E ++ ++G P+
Sbjct: 14 LGLDFGRKRIGVAGCDRTGLIATGITTIERTSFEQDV--EQIRQIVNEREVQILVMGLPY 71
Query: 85 NRQQNAA-DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143
+ + A QV+ F LS KL Y +E TS E LL + P +K +
Sbjct: 72 SMDGSIGFQARQVQKFTTRLSKALKL---PVEYVDERLTSFQAEQLLIAENRSPSRHKGL 128
Query: 144 LDKFAAVGILQEYLD 158
+D+ AA ILQ++LD
Sbjct: 129 IDRKAAALILQQWLD 143
>gi|58336756|ref|YP_193341.1| Holliday junction resolvase-like protein [Lactobacillus acidophilus
NCFM]
gi|227903317|ref|ZP_04021122.1| crossover junction endodeoxyribonuclease [Lactobacillus acidophilus
ATCC 4796]
gi|62900899|sp|Q5FLW4.1|RUVX_LACAC RecName: Full=Putative Holliday junction resolvase
gi|58254073|gb|AAV42310.1| hypothetical protein LBA0419 [Lactobacillus acidophilus NCFM]
gi|227868946|gb|EEJ76367.1| crossover junction endodeoxyribonuclease [Lactobacillus acidophilus
ATCC 4796]
Length = 142
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 74/142 (52%), Gaps = 12/142 (8%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K VG++ISD A L + + + + L+ +++++GF++G
Sbjct: 2 RLLGLDVGSKTVGVAISDELGITAQKLETIQIDETKYNFGMRPLKKLVRQYDVDGFVLGL 61
Query: 83 PFNRQQNAADAV-QVKLFIDDLSATKKLED---MKYAYWNEGFTS-KGVELLLNPLDLHP 137
P N + ++V + K + K+LE+ + Y +E T+ + +L+ +H
Sbjct: 62 PKNMDGTSGNSVARSKAY------GKRLEEKFNLPVYYSDERLTTIESRRVLIEDAGMHD 115
Query: 138 V-EYKTILDKFAAVGILQEYLD 158
+ K ++D+ AAV ILQ YLD
Sbjct: 116 RKKRKQVIDQMAAVLILQNYLD 137
>gi|389577148|ref|ZP_10167176.1| RNAse H-fold protein YqgF [Eubacterium cellulosolvens 6]
gi|389312633|gb|EIM57566.1| RNAse H-fold protein YqgF [Eubacterium cellulosolvens 6]
Length = 146
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 66/143 (46%), Gaps = 4/143 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNT-IDLMAEDFRSLISEFNLEGFIVG 81
R LGLD G K VG+++SD A L + R++ T + L ++ + ++G
Sbjct: 2 RILGLDYGAKTVGVAVSDALGITAQALETVTRERETKLRRTVARIAELCEQYEISKIVLG 61
Query: 82 YPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE-Y 140
P D Q + ++ KK ++ W+E T+ + +L+ + +
Sbjct: 62 LPLLMSDEIGDRAQKAMEFGEM--LKKRTGLEVIMWDERLTTVAADEVLDEMGVRGRHNR 119
Query: 141 KTILDKFAAVGILQEYLDNANRK 163
K ++D+ AA ILQEYLD + K
Sbjct: 120 KAVIDQIAAGFILQEYLDAQSAK 142
>gi|169334466|ref|ZP_02861659.1| hypothetical protein ANASTE_00869 [Anaerofustis stercorihominis DSM
17244]
gi|169259183|gb|EDS73149.1| RNAse H domain protein, YqgF family [Anaerofustis stercorihominis
DSM 17244]
Length = 144
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 5/140 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R L LD GD +G+++SD + A + V+ R KN I+ E + I E++ I+G+
Sbjct: 4 RILALDYGDSRIGVAVSDALHITAQGICVIKRTKN-IEEDIEKIKKYIKEYDTGLVILGH 62
Query: 83 PFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + A+ + F D L K+ D+ W+E ++K E L ++ + +
Sbjct: 63 PLNLSGERGTRALVTEEFCDIL---KEKIDIPVELWDERLSTKEAERALEAGGVNWRKKR 119
Query: 142 TILDKFAAVGILQEYLDNAN 161
++D AA IL YLD N
Sbjct: 120 EVIDMMAAQIILSSYLDYNN 139
>gi|125623030|ref|YP_001031513.1| Holliday junction resolvase-like protein [Lactococcus lactis subsp.
cremoris MG1363]
gi|389853355|ref|YP_006355599.1| Holliday junction resolvase-like protein [Lactococcus lactis subsp.
cremoris NZ9000]
gi|167012732|sp|A2RHM2.1|RUVX_LACLM RecName: Full=Putative Holliday junction resolvase
gi|124491838|emb|CAL96758.1| putative Hollyday junction resolvase [Lactococcus lactis subsp.
cremoris MG1363]
gi|300069777|gb|ADJ59177.1| Holliday junction resolvase-like protein [Lactococcus lactis subsp.
cremoris NZ9000]
Length = 143
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 2/136 (1%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K VG+S+SD A P+ + +L + LI E+ E ++G
Sbjct: 4 RILGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFDRLAVLIKEYKPEKVVLGL 63
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P + N + ++ + D + ++ AY +E T+ E +L + + K
Sbjct: 64 P--KHMNGDEGIRAEASRDYGTKLANKFGLEVAYQDERLTTAQAEKVLIDGGVRRKDRKK 121
Query: 143 ILDKFAAVGILQEYLD 158
+DK AAV ILQ YLD
Sbjct: 122 SIDKLAAVLILQNYLD 137
>gi|158333266|ref|YP_001514438.1| Holliday junction resolvase-like protein [Acaryochloris marina
MBIC11017]
gi|359462317|ref|ZP_09250880.1| Holliday junction resolvase-like protein [Acaryochloris sp. CCMEE
5410]
gi|189046084|sp|B0C512.1|RUVX_ACAM1 RecName: Full=Putative Holliday junction resolvase
gi|158303507|gb|ABW25124.1| holliday junction resolvase, putative [Acaryochloris marina
MBIC11017]
Length = 144
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 4/135 (2%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
LGLD+G + +G++ D IA+ L+ + R T D+ E R ++ + ++ +VG P+
Sbjct: 7 LGLDLGHRRIGVAGCDGTGLIATGLTTIRRTSFTKDM--EILRQIVVDRQVKTLVVGLPY 64
Query: 85 NRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
+ Q + A K D+ + +E TS E ++ ++P E K ++
Sbjct: 65 TMKGEVGTQAQKTQKLAKRIA--KALDLPLDFIDERLTSHEAESMMREQRINPAEQKGMI 122
Query: 145 DKFAAVGILQEYLDN 159
D+ AA ILQ +LD
Sbjct: 123 DRKAAALILQRWLDQ 137
>gi|398353202|ref|YP_006398666.1| holliday junction resolvase [Sinorhizobium fredii USDA 257]
gi|390128528|gb|AFL51909.1| putative holliday junction resolvase [Sinorhizobium fredii USDA
257]
Length = 162
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 6/135 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+G K +GLS+SD + A+P V+ R K +D A+ ++ + F++G P N
Sbjct: 21 GLDLGTKTIGLSVSDLGRRFATPREVIRRVKFGVD--AQALLDAATKERIAAFVIGLPVN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
Q + F+ ++ + D+ + W+E ++ E +L +D+ + +
Sbjct: 79 MDGTEGPRCQATRAFVRNMG---EKTDIPFVLWDERLSTVAAERVLIEMDVSRRKRAERI 135
Query: 145 DKFAAVGILQEYLDN 159
D AA ILQ LD
Sbjct: 136 DSAAASFILQGALDR 150
>gi|259502866|ref|ZP_05745768.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
gi|259169233|gb|EEW53728.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
Length = 147
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 69/149 (46%), Gaps = 12/149 (8%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDF-----RSLISEFNLEG 77
R LGLDVG K VG+++SDP A + ++ ID AE F L+ + + G
Sbjct: 2 RLLGLDVGSKTVGVAVSDPLGWTAQAVEII-----PIDEDAEVFGLDRVAELVHKEQVAG 56
Query: 78 FIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTS-KGVELLLNPLDLH 136
F++G P N V +L ++ + + +E T+ + +L+ D+
Sbjct: 57 FVLGLPKNMNNTEGPRVAASKHYGEL-LQERFPQLPIDFQDERLTTVEAHRMLVEEADIS 115
Query: 137 PVEYKTILDKFAAVGILQEYLDNANRKVN 165
+ K ++D+ AA ILQ YLD R V
Sbjct: 116 RAKQKKVIDEVAATFILQSYLDRHGRLVQ 144
>gi|296115811|ref|ZP_06834437.1| putative Holliday junction resolvase [Gluconacetobacter hansenii
ATCC 23769]
gi|295977788|gb|EFG84540.1| putative Holliday junction resolvase [Gluconacetobacter hansenii
ATCC 23769]
Length = 153
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 7/138 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +G+D G K +G+++SD +ASP + + R+K + L+A + L ++ + G
Sbjct: 18 RLMGIDPGQKTIGIALSDVSLMLASPCTTVRRRK--LSLVAAEIGELARRHDVGALVGGL 75
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGV-ELLLNPLDLHPVEY 140
P + + A Q + ++ +LS L A W+E +S V +L+ +D+
Sbjct: 76 PLSLDGSFGPAAQAARDWMMNLSQQVGL---PAAMWDERLSSSAVNRMLIQDVDMTRQRR 132
Query: 141 KTILDKFAAVGILQEYLD 158
+ ++DK AA ILQ LD
Sbjct: 133 EQVVDKVAAAYILQAALD 150
>gi|104774411|ref|YP_619391.1| Holliday junction resolvase-like protein [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
gi|118597212|sp|Q1G949.1|RUVX_LACDA RecName: Full=Putative Holliday junction resolvase
gi|103423492|emb|CAI98394.1| Putative Hollyday junction resolvase [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
Length = 142
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 10/141 (7%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K +G+++SDP A + + ++ + + L+ E+ GF++G
Sbjct: 2 RLLGLDVGSKTIGVAVSDPLGITAQSVMTIPIDEDRHNFGMRSLKKLVREYEANGFVLGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTSKGVE-LLLNPLDLHP- 137
P N A +V + + +LE + Y +E T+ E +L+ +H
Sbjct: 62 PKNMDGTAGRSVSRSKAMGE-----RLEQKFGLPVYYDDERLTTVASERILVEEAGMHDR 116
Query: 138 VEYKTILDKFAAVGILQEYLD 158
+ K ++D+ AAV ILQ YLD
Sbjct: 117 RQRKEVVDQMAAVLILQNYLD 137
>gi|414083451|ref|YP_006992159.1| uncharacterised family protein [Carnobacterium maltaromaticum
LMA28]
gi|412997035|emb|CCO10844.1| uncharacterised family protein [Carnobacterium maltaromaticum
LMA28]
Length = 137
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 3/135 (2%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLDVG + VG++ISDP A + + ++ + L+ E+ + F+VG P
Sbjct: 1 MGLDVGSRTVGIAISDPFGWTAQGIETIRINEDEENYGISRVMELVQEYEVSKFVVGLPK 60
Query: 85 NRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYKTI 143
N + + + +L KK D+ + +E T+ E +L+ + + K +
Sbjct: 61 NMDNSIGPRAEASMRYAEL--LKKQIDLPVIFQDERLTTVQAERMLIEQANTSREKRKKV 118
Query: 144 LDKFAAVGILQEYLD 158
+DK AAV ILQ YLD
Sbjct: 119 IDKVAAVMILQNYLD 133
>gi|334127633|ref|ZP_08501538.1| crossover junction endodeoxyribonuclease [Centipeda periodontii DSM
2778]
gi|333388946|gb|EGK60113.1| crossover junction endodeoxyribonuclease [Centipeda periodontii DSM
2778]
Length = 141
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 74/146 (50%), Gaps = 8/146 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R+L LD+GD +G+++SD A + + R + DL + L+ E+ F+ G
Sbjct: 3 RYLSLDIGDATIGIAVSDLLGLTAQGVETIRRTALSADL--DRLAVLVQEYEPAAFVAGL 60
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P + + + V+ F+ +++ ++ ++ YW+E ++ L D+ + +
Sbjct: 61 PKHMNGDEGSRCEIVRAFMANVA--ERFPAIEIHYWDERLSTVAASRALLEGDVSRRKRR 118
Query: 142 TILDKFAAVGILQEYLDNANRKVNLK 167
++DK AAV ILQ +LD R+ +LK
Sbjct: 119 KVIDKMAAVYILQGFLD---RQQHLK 141
>gi|373496501|ref|ZP_09587047.1| putative Holliday junction resolvase [Fusobacterium sp. 12_1B]
gi|404368669|ref|ZP_10974019.1| putative Holliday junction resolvase [Fusobacterium ulcerans ATCC
49185]
gi|313687963|gb|EFS24798.1| putative Holliday junction resolvase [Fusobacterium ulcerans ATCC
49185]
gi|371965390|gb|EHO82890.1| putative Holliday junction resolvase [Fusobacterium sp. 12_1B]
Length = 139
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 73/139 (52%), Gaps = 7/139 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
+++ LDVGD +G++ SD +A+PL V+ RKK + + L + N + +VG
Sbjct: 4 KYISLDVGDVRIGVAKSDIMGIVATPLEVIDRKKTK---AVKRIKELCIQENTKALVVGI 60
Query: 83 PFNRQ-QNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH-PVEY 140
P + A +V+ FI L+ K++E ++ +E T+ + +LN + +E
Sbjct: 61 PKSLDGTEKRQAEKVREFIAKLN--KEIEGLEIIEVDERLTTVSADRMLNESNKKGALEK 118
Query: 141 KTILDKFAAVGILQEYLDN 159
+ ++DK AA ILQ +LD
Sbjct: 119 RKVVDKIAAAIILQTFLDT 137
>gi|404417953|ref|ZP_10999735.1| Holliday junction resolvase-like protein [Staphylococcus arlettae
CVD059]
gi|403489669|gb|EJY95232.1| Holliday junction resolvase-like protein [Staphylococcus arlettae
CVD059]
Length = 142
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 70/147 (47%), Gaps = 7/147 (4%)
Query: 13 MLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISE 72
MLK+K+ LGLDVG K VG++ISD A L L ++ L + ++ +
Sbjct: 1 MLKKKI------LGLDVGSKTVGIAISDLMGWTAQGLDTLQINESENQLGIDQLVQIVKK 54
Query: 73 FNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNP 132
N+ ++G P N + + L + + L +K W+E ++ E L
Sbjct: 55 ENVGTIVIGLPKNMNNSIGFRGEASLQYKE-QLQEALPTVKLIMWDERLSTMAAERSLLE 113
Query: 133 LDLHPVEYKTILDKFAAVGILQEYLDN 159
D+ + K ++DK AAV ILQ YLD+
Sbjct: 114 ADVSRQKRKKVIDKMAAVFILQGYLDS 140
>gi|403046393|ref|ZP_10901863.1| Holliday junction resolvase-like protein [Staphylococcus sp. OJ82]
gi|402763800|gb|EJX17892.1| Holliday junction resolvase-like protein [Staphylococcus sp. OJ82]
Length = 142
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 7/147 (4%)
Query: 13 MLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISE 72
MLK K+ LGLDVG K VG+++SD A L L + +L E +I +
Sbjct: 1 MLKHKI------LGLDVGSKTVGIAVSDLMGWTAQGLDTLRIDEENNELGIEQLVKIIKK 54
Query: 73 FNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNP 132
N+ ++G P N + + L + + L ++ W+E ++ E L
Sbjct: 55 ENVGSVVIGLPKNMNNSIGFRGEASLQYKE-QLQEALPSVEIIMWDERLSTMAAERSLLE 113
Query: 133 LDLHPVEYKTILDKFAAVGILQEYLDN 159
D+ + K ++DK AAV ILQ YLD+
Sbjct: 114 ADVSRQKRKKVIDKMAAVFILQGYLDS 140
>gi|441508409|ref|ZP_20990333.1| putative Holliday junction resolvase [Gordonia aichiensis NBRC
108223]
gi|441447437|dbj|GAC48294.1| putative Holliday junction resolvase [Gordonia aichiensis NBRC
108223]
Length = 142
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 5/140 (3%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV 80
RGR +G+DVG +G+++SDP +A+P+ + D +L+ E+ IV
Sbjct: 5 RGRRIGVDVGSVRIGVAVSDPDGILATPVETV--AGADADAAVRRLHALVEEYEAVEVIV 62
Query: 81 GYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
G P R + A + + F L+ +LE + + +E T+ + L+
Sbjct: 63 GLPKTLRNTDGPAAEKARAFGARLA--DELEGISVVFSDERLTTVAAQQALHASGRTAKS 120
Query: 140 YKTILDKFAAVGILQEYLDN 159
+ ++D+ AAV ILQ +LD+
Sbjct: 121 SRGVIDQAAAVAILQGWLDS 140
>gi|157693142|ref|YP_001487604.1| Holliday junction resolvase-like protein [Bacillus pumilus
SAFR-032]
gi|194017226|ref|ZP_03055838.1| conserved hypothetical protein [Bacillus pumilus ATCC 7061]
gi|389571962|ref|ZP_10162050.1| hypothetical protein BAME_06190 [Bacillus sp. M 2-6]
gi|167012693|sp|A8FFM7.1|RUVX_BACP2 RecName: Full=Putative Holliday junction resolvase
gi|157681900|gb|ABV63044.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Bacillus pumilus SAFR-032]
gi|194011094|gb|EDW20664.1| conserved hypothetical protein [Bacillus pumilus ATCC 7061]
gi|388428448|gb|EIL86245.1| hypothetical protein BAME_06190 [Bacillus sp. M 2-6]
Length = 138
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 14/145 (9%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD+G K +G++ISD A + + + D ++S++ + ++G+
Sbjct: 2 RILGLDLGTKTLGVAISDEMGWTAQGIETIKIDEAGGDFGLSRLSEIVSQYGTDKIVLGF 61
Query: 83 PFNRQQNAA---DAVQVKLFIDDLSATKKLED---MKYAYWNEGFTSKGVELLLNPLDLH 136
P N +A Q S K LE+ + W+E ++ E +L D+
Sbjct: 62 PKNMNGTVGPRGEASQ--------SFAKVLENTYNVPVVLWDERLSTMAAEKMLISADVS 113
Query: 137 PVEYKTILDKFAAVGILQEYLDNAN 161
+ K ++DK AAV ILQ YLD+ N
Sbjct: 114 RQKRKKVIDKMAAVMILQGYLDSLN 138
>gi|374855655|dbj|BAL58510.1| holliday junction resolvase YqgF [uncultured candidate division OP1
bacterium]
Length = 144
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 67/141 (47%), Gaps = 10/141 (7%)
Query: 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 81
GR LG+D GDK +GL++SD +ASPL+V RK DL + L+S + + ++G
Sbjct: 2 GRILGIDFGDKRLGLALSDESYTLASPLAVYERKDLQSDL--KFLSDLVSRYQITEIVLG 59
Query: 82 YPFNRQQNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTSKGVELLLNPLDLHPV 138
P + Q L L LE+ + + ++E T+ E +L DL
Sbjct: 60 LPVTMDGSLGPKAQQVLEFQKL-----LEEHVKIPVSTFDERLTTAEAERVLLQADLSRK 114
Query: 139 EYKTILDKFAAVGILQEYLDN 159
+ K D AAV ILQ YL
Sbjct: 115 KRKARRDALAAVLILQGYLQT 135
>gi|149918360|ref|ZP_01906851.1| hypothetical protein PPSIR1_36632 [Plesiocystis pacifica SIR-1]
gi|149820886|gb|EDM80295.1| hypothetical protein PPSIR1_36632 [Plesiocystis pacifica SIR-1]
Length = 156
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 5/144 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R L LDVG K +GL++SD +A VL R+ + +D A +L SE + +VG
Sbjct: 2 RVLALDVGSKTIGLAVSDVGGSMAHAREVLRRQGHKLDSAA--VLALASELEVRALVVGL 59
Query: 83 PF---NRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
P + + A V+ L + + + + + W+E +++ E L D+ +
Sbjct: 60 PLELDGSEGHRARLVRRFLKVLEAAIAEAERALPVHTWDERYSTAAAERTLLEADVSRAK 119
Query: 140 YKTILDKFAAVGILQEYLDNANRK 163
K +D AA ILQ +LD R+
Sbjct: 120 RKQNIDAVAAQFILQGWLDAQARR 143
>gi|294012198|ref|YP_003545658.1| putative Holliday junction resolvase [Sphingobium japonicum UT26S]
gi|390168113|ref|ZP_10220082.1| Holliday junction resolvase-like protein [Sphingobium indicum B90A]
gi|390169403|ref|ZP_10221339.1| Holliday junction resolvase-like protein [Sphingobium indicum B90A]
gi|292675528|dbj|BAI97046.1| putative Holliday junction resolvase [Sphingobium japonicum UT26S]
gi|389587900|gb|EIM65959.1| Holliday junction resolvase-like protein [Sphingobium indicum B90A]
gi|389589288|gb|EIM67314.1| Holliday junction resolvase-like protein [Sphingobium indicum B90A]
Length = 156
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 13/142 (9%)
Query: 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 81
GR +GLDVG K +G+++ D IASP + R K + D +A + + + ++G ++G
Sbjct: 19 GRLIGLDVGTKTIGIALCDAGWSIASPAHTVSRGKFSKDKIA--LAAFMEQQQVKGVVIG 76
Query: 82 YPFNRQQNAADAVQV-KLF---IDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHP 137
P N + + Q + F I DL + +W+E ++++ V L D
Sbjct: 77 LPLNLDGSESPRSQASRAFGRNIADLG-------LPILFWDERWSTQAVTRTLLEADASR 129
Query: 138 VEYKTILDKFAAVGILQEYLDN 159
++DK AA ILQ +D
Sbjct: 130 ARRGELVDKLAASYILQGAIDG 151
>gi|310778165|ref|YP_003966498.1| Holliday junction resolvase YqgF [Ilyobacter polytropus DSM 2926]
gi|309747488|gb|ADO82150.1| Holliday junction resolvase YqgF [Ilyobacter polytropus DSM 2926]
Length = 139
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 7/138 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
++L LDVGD +G++ SD A PL V+ R K + + L + N + +VG
Sbjct: 4 KYLALDVGDVRIGVARSDAMGMFAHPLEVIDRTKTK---AVKRVQELCRQENTKSIVVGI 60
Query: 83 PFNRQ-QNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P + Q A +V+ FI+ L+ K +E ++ +E ++ E +LN K
Sbjct: 61 PKSLDGQEKRQAEKVREFIEKLN--KSIEGLEIIEIDERLSTISAERMLNETTNKDARGK 118
Query: 142 -TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 119 RKVVDKIAAAIILQTYLD 136
>gi|390454916|ref|ZP_10240444.1| Holliday junction resolvase [Paenibacillus peoriae KCTC 3763]
Length = 138
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 4/136 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
+ +GLD GD+ +G+++SD A L V+ R+ + D LI + + +VG
Sbjct: 2 KVMGLDYGDRRIGVAVSDAFGWTAQGLEVIERRGD--DSEFGKIADLIRDHEIGEVVVGL 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N N + ++ I+ K+L + W+E T++ E L D+ + K
Sbjct: 60 PKN--MNGTVGPRGEICIEFADRLKELLGLPVHLWDERLTTRSAERALLEADVSRKKRKQ 117
Query: 143 ILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 118 VIDKLAASLILQNYLD 133
>gi|293374256|ref|ZP_06620584.1| RNAse YqgF [Turicibacter sanguinis PC909]
gi|325844837|ref|ZP_08168289.1| RNAse H domain protein, YqgF family [Turicibacter sp. HGF1]
gi|292647089|gb|EFF65071.1| RNAse YqgF [Turicibacter sanguinis PC909]
gi|325489024|gb|EGC91412.1| RNAse H domain protein, YqgF family [Turicibacter sp. HGF1]
Length = 143
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 8/140 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
+ LGLD+G + G++ISD +A + ++N + + L+ + ++G
Sbjct: 2 KILGLDLGTRTCGIAISDALGMMAHGVETFRFEENHYKKAIQHVQELVKTHKISKIVLGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTSKGVELLLNPLDLHPVE 139
P N + + QV KKLE+ + W+E T+ VE +L D+ +
Sbjct: 62 PKNMNGSIGERGQV-----TQEFAKKLEEATNVTVILWDERLTTMQVERVLIQADVSRNK 116
Query: 140 YKTILDKFAAVGILQEYLDN 159
K ++DK AA ILQ YLD+
Sbjct: 117 RKKVVDKMAATIILQSYLDS 136
>gi|149913939|ref|ZP_01902471.1| hypothetical protein RAZWK3B_18088 [Roseobacter sp. AzwK-3b]
gi|149812223|gb|EDM72054.1| hypothetical protein RAZWK3B_18088 [Roseobacter sp. AzwK-3b]
Length = 158
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 6/136 (4%)
Query: 24 FLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYP 83
+GLD+G K +G++ISD +A+P + RKK ++D A + ++ + G ++G P
Sbjct: 19 IMGLDLGTKTIGVAISDRLLSVATPTETIKRKKFSVD--AARLLEIATQREVAGLVLGLP 76
Query: 84 FNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
N + Q + F +L + L ++ +W+E ++ E L D
Sbjct: 77 RNMDGSEGPRCQSTRAFARNL---EPLTELPITFWDERLSTVAAERALLEADTSRKRRAE 133
Query: 143 ILDKFAAVGILQEYLD 158
++D AA ILQ LD
Sbjct: 134 VIDNVAASYILQGVLD 149
>gi|119512614|ref|ZP_01631690.1| Holliday junction resolvase-like protein [Nodularia spumigena
CCY9414]
gi|119462747|gb|EAW43708.1| Holliday junction resolvase-like protein [Nodularia spumigena
CCY9414]
Length = 156
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 76/148 (51%), Gaps = 8/148 (5%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
LGLD G K +G++ D IA+ L+ + R D+ + R+++ E ++ ++G P+
Sbjct: 14 LGLDFGRKRMGVAGCDGTGLIATGLTTIERTSFERDV--QQIRNIVDERQVQILVIGLPY 71
Query: 85 NRQQNAA-DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143
+ A QV+ F L K ++ Y +E TS E LL + P +K +
Sbjct: 72 SMDGTLGFQARQVQKFAKRLG---KALNLPVEYIDERLTSFQAEQLLIAENRSPSRHKGL 128
Query: 144 LDKFAAVGILQEYLDNANRKVNLKANVL 171
+D+ AA ILQ++LD +R+ + + +VL
Sbjct: 129 IDRKAASIILQQWLD--SRRASCQTSVL 154
>gi|84517362|ref|ZP_01004716.1| hypothetical protein SKA53_06000 [Loktanella vestfoldensis SKA53]
gi|84508842|gb|EAQ05305.1| hypothetical protein SKA53_06000 [Loktanella vestfoldensis SKA53]
Length = 158
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 6/144 (4%)
Query: 17 KVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLE 76
++ + G GLD+G +G+++SD +A+PL + R+K T+D A + + +
Sbjct: 12 QLPRHGAVAGLDLGTVTIGVAVSDLMRSVATPLETIKRRKFTLD--AARLFEITTHRMIA 69
Query: 77 GFIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDL 135
G ++G P N + Q + F +L +KL + +W+E ++ E + D+
Sbjct: 70 GLVLGLPRNMDGSEGPRCQATRAFARNL---EKLTPLPITFWDERLSTVAAERAMLEADM 126
Query: 136 HPVEYKTILDKFAAVGILQEYLDN 159
+D AA ILQ LD
Sbjct: 127 SRKRRAERIDNIAASYILQGMLDR 150
>gi|313896256|ref|ZP_07829809.1| RNAse H domain protein, YqgF family [Selenomonas sp. oral taxon 137
str. F0430]
gi|312975055|gb|EFR40517.1| RNAse H domain protein, YqgF family [Selenomonas sp. oral taxon 137
str. F0430]
Length = 142
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 72/145 (49%), Gaps = 8/145 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R++ LD+GD +G+++SD A + + R D E +L+ ++ ++ + G
Sbjct: 3 RYMSLDIGDVTIGIAVSDLLGLTAQGVETIRRTTPAADF--ERLGTLMRDYEVDALVAGL 60
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P + + + V+ F+ + A ++ +K YW+E ++ L D+ + +
Sbjct: 61 PKHMNGDEGTRCEMVRAFMAE--AAQRFPGVKIHYWDERLSTVAATRTLLEGDVSRKKRR 118
Query: 142 TILDKFAAVGILQEYLDNANRKVNL 166
++DK AAV ILQ +LD R+ NL
Sbjct: 119 KVIDKMAAVYILQGFLD---RQRNL 140
>gi|298530269|ref|ZP_07017671.1| Holliday junction resolvase YqgF [Desulfonatronospira thiodismutans
ASO3-1]
gi|298509643|gb|EFI33547.1| Holliday junction resolvase YqgF [Desulfonatronospira thiodismutans
ASO3-1]
Length = 140
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 70/136 (51%), Gaps = 6/136 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
++LG+D G K VGL++SD K K+ PL + R +T + + + ++I E +E ++G
Sbjct: 2 KYLGIDFGIKRVGLAVSDEKGKMVFPLKTIHR--STRENLFLELLNIIQERGIEAIVLGL 59
Query: 83 PFNRQ-QNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P + + Q + F+ L + D+ NE +TS E +LN + + K
Sbjct: 60 PLGPDGEKSLTCRQAENFMQSLD---RRTDLPIYTVNEAYTSMEAEDILNRCGIRVEKQK 116
Query: 142 TILDKFAAVGILQEYL 157
LD+ AAV IL+ +L
Sbjct: 117 ESLDQAAAVIILESFL 132
>gi|221639098|ref|YP_002525360.1| Holliday junction resolvase-like protein [Rhodobacter sphaeroides
KD131]
gi|254767523|sp|B9KRR7.1|RUVX_RHOSK RecName: Full=Putative Holliday junction resolvase
gi|221159879|gb|ACM00859.1| Holliday junction resolvase [Rhodobacter sphaeroides KD131]
Length = 160
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 6/141 (4%)
Query: 20 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFI 79
+ G GLD+G K VG+++SD +IA+PL + R K T D A +++ E L G +
Sbjct: 15 RTGALAGLDLGTKTVGVAVSDGLRRIATPLLTVRRTKFTED--AAKLKAIADERRLVGIV 72
Query: 80 VGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
+G P N + Q + F +L ++ + +W+E ++ E L D
Sbjct: 73 LGLPRNMDGSEGPRAQSTRAFARNLV---QVLPLPVGFWDERLSTVAAERALLEADTSRK 129
Query: 139 EYKTILDKFAAVGILQEYLDN 159
++D AA ILQ LD
Sbjct: 130 RRAEVIDHVAAGYILQGVLDR 150
>gi|298492528|ref|YP_003722705.1| Holliday junction resolvase YqgF ['Nostoc azollae' 0708]
gi|298234446|gb|ADI65582.1| Holliday junction resolvase YqgF ['Nostoc azollae' 0708]
Length = 158
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 14/159 (8%)
Query: 11 EQMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLI 70
+Q LK +S LG+DVG K +GL+ D IA+ L+ + RK D+ E + ++
Sbjct: 4 QQKLKSFISA----LGVDVGSKRIGLAGCDGTGLIATGLTTIDRKSFEEDV--EQIQQIV 57
Query: 71 SEFNLEGFIVGYPFNRQQNAA-DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELL 129
+ ++ +VG P+ + A V+ F L+ KL Y +E TS E L
Sbjct: 58 NARRVQVLVVGLPYAMDGSLGFQARHVQKFTHRLAQALKL---PVEYVDERLTSYQAEQL 114
Query: 130 LNPLDLHPVEYKTILDKFAAVGILQEYLD----NANRKV 164
L + P +K ++D+ AA ILQ++LD +NR V
Sbjct: 115 LIAENRSPSRHKGLIDRKAAALILQQWLDARGSTSNRSV 153
>gi|410681452|ref|YP_006933854.1| Holliday junction resolvase [Streptococcus pyogenes A20]
gi|395454815|dbj|BAM31154.1| Holliday junction resolvase-like protein [Streptococcus pyogenes M1
476]
gi|409694041|gb|AFV38901.1| putative Holliday junction resolvase [Streptococcus pyogenes A20]
Length = 136
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 3/135 (2%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLDVG K VG++ISDP A L ++ + + L+ ++ +E F++G P
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQYQVEQFVIGLPK 60
Query: 85 NRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTS-KGVELLLNPLDLHPVEYKTI 143
N N + +V I + + L + Y +E T+ + +L+ D+ + K +
Sbjct: 61 N--MNNTNGPRVDASITYGNHIEHLFGLPVHYQDERLTTVEAKRMLIEQADISRGKRKKV 118
Query: 144 LDKFAAVGILQEYLD 158
+DK AA ILQ YL+
Sbjct: 119 IDKLAAQLILQNYLN 133
>gi|312110120|ref|YP_003988436.1| Holliday junction resolvase YqgF [Geobacillus sp. Y4.1MC1]
gi|336234545|ref|YP_004587161.1| Holliday junction resolvase YqgF [Geobacillus thermoglucosidasius
C56-YS93]
gi|423719156|ref|ZP_17693338.1| holliday junction resolvase [Geobacillus thermoglucosidans
TNO-09.020]
gi|311215221|gb|ADP73825.1| Holliday junction resolvase YqgF [Geobacillus sp. Y4.1MC1]
gi|335361400|gb|AEH47080.1| Holliday junction resolvase YqgF [Geobacillus thermoglucosidasius
C56-YS93]
gi|383368059|gb|EID45334.1| holliday junction resolvase [Geobacillus thermoglucosidans
TNO-09.020]
Length = 138
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 12/142 (8%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD+G K +G+++SD A + + + + + R +I E+ ++ +VG+
Sbjct: 2 RALGLDLGTKTLGVAVSDELGWTAQGIETISIDEEQGEYGLKRLREIIDEYKVDTIVVGF 61
Query: 83 PFNRQQNA---ADAVQ--VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHP 137
P N A+A Q K+ + + + W+E ++ E +L D+
Sbjct: 62 PKNMNGTVGPRAEASQRFAKILEQEFA-------LPVILWDERLSTMAAERMLIAADVSR 114
Query: 138 VEYKTILDKFAAVGILQEYLDN 159
+ + ++DK AAV ILQ YLD+
Sbjct: 115 KKRRKVIDKMAAVVILQSYLDS 136
>gi|313674137|ref|YP_004052133.1| holliday junction resolvase yqgf [Marivirga tractuosa DSM 4126]
gi|312940835|gb|ADR20025.1| Holliday junction resolvase YqgF [Marivirga tractuosa DSM 4126]
Length = 137
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 70/140 (50%), Gaps = 11/140 (7%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R L +D G K VGL+++DP IASPL ++ K+ + +A F S +E + GY
Sbjct: 3 RVLAIDYGTKRVGLAVTDPLKIIASPLE-MIHSKDLVQYLANYFSSE----EVEAVVCGY 57
Query: 83 PFNRQQNAADAV-QVKLFIDDLSATKKLEDMKYAYWNEGFTSK-GVELLLNPLDLHPVEY 140
P N + A DA V FI+ KK M +E F+S+ ++ +++
Sbjct: 58 PTNEEGEATDATRHVDAFINLFK--KKFPTMPLHLQDESFSSQEAMQAMIHSGSNRKQRN 115
Query: 141 KTI--LDKFAAVGILQEYLD 158
K +DK +A ILQ++L+
Sbjct: 116 KKSGNIDKISAAIILQQFLE 135
>gi|19704033|ref|NP_603595.1| DNA integration/recombination/invertion protein [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gi|296327898|ref|ZP_06870434.1| DNA integration/recombination/invertion protein [Fusobacterium
nucleatum subsp. nucleatum ATCC 23726]
gi|32130042|sp|Q8RFJ7.1|RUVX_FUSNN RecName: Full=Putative Holliday junction resolvase
gi|19714225|gb|AAL94894.1| DNA integration/recombination/invertion protein [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gi|296155032|gb|EFG95813.1| DNA integration/recombination/invertion protein [Fusobacterium
nucleatum subsp. nucleatum ATCC 23726]
Length = 138
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 78/139 (56%), Gaps = 9/139 (6%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKK-NTIDLMAEDFRSLISEFNLEGFIVG 81
R++ LD+GD +G++ SD IASPL + RKK ++ +AE + E + +VG
Sbjct: 3 RYIALDIGDVRIGVARSDIMGIIASPLETINRKKVKSVKRIAE----ICKENDTNLVVVG 58
Query: 82 YPFNRQ-QNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH-PVE 139
P + + A +V+ +I+ L K++E+++ +E F++ + +L L+ + +E
Sbjct: 59 IPKSLDGEEKRQAEKVREYIEKLK--KEIENLEIIEVDERFSTVIADNILKELNKNGAIE 116
Query: 140 YKTILDKFAAVGILQEYLD 158
+ ++DK AA ILQ YLD
Sbjct: 117 KRKVVDKVAASIILQTYLD 135
>gi|417091713|ref|ZP_11956519.1| Holliday junction resolvase-like protein [Streptococcus suis R61]
gi|353533019|gb|EHC02687.1| Holliday junction resolvase-like protein [Streptococcus suis R61]
Length = 136
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 7/137 (5%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLDVG K VG++ISDP A L ++ + + + L+ ++ ++ F+VG P
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIPIDEEKGEFGFQRLTELVEQYKVDKFVVGLPK 60
Query: 85 NRQQNAADAVQVKLFIDDLSATKKLEDMKYA--YWNEGFTSKGVE-LLLNPLDLHPVEYK 141
N + V+ +L +E K Y +E T+ E +L+ D+ + K
Sbjct: 61 NMNNTSGPRVEASQAYGNLL----IEQFKLPVDYQDERLTTVAAERMLIEQADISRGKRK 116
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 117 KVIDKLAAQLILQNYLD 133
>gi|237744282|ref|ZP_04574763.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
7_1]
gi|422940108|ref|ZP_16967465.1| DNA integration/recombination/inversion protein [Fusobacterium
nucleatum subsp. animalis ATCC 51191]
gi|229431511|gb|EEO41723.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
7_1]
gi|339890262|gb|EGQ79417.1| DNA integration/recombination/inversion protein [Fusobacterium
nucleatum subsp. animalis ATCC 51191]
Length = 147
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 78/139 (56%), Gaps = 9/139 (6%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKK-NTIDLMAEDFRSLISEFNLEGFIVG 81
R++ LD+GD +G++ SD IASPL + RKK ++ +AE + E + +VG
Sbjct: 3 RYIALDIGDVRIGVARSDIMGIIASPLETINRKKVKSVKRIAE----ICKENDTNLIVVG 58
Query: 82 YPFNRQ-QNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH-PVE 139
P + + A +V+ +I+ L K++E+++ +E F++ + +L L+ + +E
Sbjct: 59 IPKSLDGEEKRQAEKVREYIEKLK--KEIENLEIIEVDERFSTVIADNILKELNKNGAIE 116
Query: 140 YKTILDKFAAVGILQEYLD 158
+ ++DK AA ILQ YLD
Sbjct: 117 KRKVVDKVAASIILQTYLD 135
>gi|403743300|ref|ZP_10952914.1| Holliday junction resolvase YqgF [Alicyclobacillus hesperidum
URH17-3-68]
gi|403122823|gb|EJY57015.1| Holliday junction resolvase YqgF [Alicyclobacillus hesperidum
URH17-3-68]
Length = 138
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 10/139 (7%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRK--KNTIDLMAEDFRSLISEFNLEGFIV 80
R L +D G++ VG+++SDP IAS L+V+ R+ + +D++A L+ E ++ IV
Sbjct: 4 RTLAVDYGERRVGIALSDPTGLIASALTVIQRETDEQVVDVIA----GLVVEHGVDRIIV 59
Query: 81 GYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
G P + + Q F L ++ + ++E T+ E L D+
Sbjct: 60 GNPITMKGEVGEKAQKAASFAQQL---RERVSIPVELFDERLTTVSAERALLEGDVRRKR 116
Query: 140 YKTILDKFAAVGILQEYLD 158
++I+D AA +LQ YLD
Sbjct: 117 RRSIIDAVAATILLQNYLD 135
>gi|333395599|ref|ZP_08477418.1| Holliday junction resolvase-like protein [Lactobacillus
coryniformis subsp. coryniformis KCTC 3167]
gi|336393183|ref|ZP_08574582.1| Holliday junction resolvase-like protein [Lactobacillus
coryniformis subsp. torquens KCTC 3535]
gi|420145862|ref|ZP_14653311.1| Putative Holliday junction resolvase [Lactobacillus coryniformis
subsp. coryniformis CECT 5711]
gi|398402481|gb|EJN55817.1| Putative Holliday junction resolvase [Lactobacillus coryniformis
subsp. coryniformis CECT 5711]
Length = 143
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 81/150 (54%), Gaps = 12/150 (8%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R+LGLDVG K VG+++SD A + ++ ++ + + + L++EF++ F+VG
Sbjct: 2 RYLGLDVGSKTVGIAVSDLLGWTAQGVEIIRINEDEEEFGIDRVKELVTEFSVTDFVVGL 61
Query: 83 PFNRQQN---AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPV 138
P N + A+A Q + L+AT L + +E T+ E +L++ +
Sbjct: 62 PKNMDNSLGPRAEASQA--YGRLLTATFGL---PVHFIDERLTTVEAERMLISQANTSRK 116
Query: 139 EYKTILDKFAAVGILQEYLDNANRKVNLKA 168
+ K ++DK AAV ILQ +LD R+ +LK+
Sbjct: 117 KRKKVIDKLAAVMILQNFLD---RESHLKS 143
>gi|427739181|ref|YP_007058725.1| RNAse H-fold protein YqgF [Rivularia sp. PCC 7116]
gi|427374222|gb|AFY58178.1| RNAse H-fold protein YqgF [Rivularia sp. PCC 7116]
Length = 170
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
LGLDVG K +G++ D IA+ L+ + R D+ E + +I E +E +VG P+
Sbjct: 32 LGLDVGRKRIGIAGCDRTGLIATGLTTVHRTTFLQDV--EQIKQIIQEREVEILVVGLPY 89
Query: 85 NRQQNAA-DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143
+ + A QV+ F L+A KL Y +E TS + ++ P K +
Sbjct: 90 SMDGSLGFQARQVQKFTKSLTAILKL---PVEYVDERLTSYQAKQMIIAEKRSPSRNKGL 146
Query: 144 LDKFAAVGILQEYLD 158
+D+ AA ILQ++LD
Sbjct: 147 VDRKAAALILQQWLD 161
>gi|398383615|ref|ZP_10541683.1| RNAse H-fold protein YqgF [Sphingobium sp. AP49]
gi|397724631|gb|EJK85096.1| RNAse H-fold protein YqgF [Sphingobium sp. AP49]
Length = 157
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 72/148 (48%), Gaps = 7/148 (4%)
Query: 13 MLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISE 72
+ + + + GR +G+DVG K +GL++ D + IASP + R K + D A + +++
Sbjct: 10 LFRAALPEGGRLIGMDVGTKTIGLALCDAQWSIASPAYTVTRGKFSKDKPA--LEAFMTQ 67
Query: 73 FNLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLN 131
++G ++G P N N+ + + F +++ + W+E ++++ V L
Sbjct: 68 QQVKGIVIGLPLNLDGTNSPRSQASRAFAHNVADIG----LPVLLWDERWSTQAVTRTLL 123
Query: 132 PLDLHPVEYKTILDKFAAVGILQEYLDN 159
D ++DK AA ILQ +D
Sbjct: 124 EADASRARRDELVDKLAASYILQGAIDG 151
>gi|167747070|ref|ZP_02419197.1| hypothetical protein ANACAC_01782 [Anaerostipes caccae DSM 14662]
gi|167654030|gb|EDR98159.1| RNAse H domain protein, YqgF family [Anaerostipes caccae DSM 14662]
Length = 138
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 5/139 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRK-KNTIDLMAEDFRSLISEFNLEGFIVG 81
R LGLD G K VG+++SD A P + RK +N + + +E+ +E ++G
Sbjct: 2 RILGLDYGTKTVGVALSDELGITAQPFETITRKDENKLRKTYARIEEIAAEYKVEKIVLG 61
Query: 82 YPFNRQQNAAD-AVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
YP N + + + F D L L+ + W+E ++ +L +
Sbjct: 62 YPKNMNNTIGERGMATEAFRDSLVRRTGLDVI---LWDERLSTVASNKVLMESGVRREHR 118
Query: 141 KTILDKFAAVGILQEYLDN 159
K ++D+ AA ILQ YLD+
Sbjct: 119 KKVIDQVAASMILQGYLDS 137
>gi|433449644|ref|ZP_20412508.1| Holliday junction resolvase-like protein [Weissella ceti NC36]
gi|429539158|gb|ELA07196.1| Holliday junction resolvase-like protein [Weissella ceti NC36]
Length = 144
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 9/141 (6%)
Query: 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 81
GR LGLDVG + VG+++SD + + ++ ++ + E + L++E GF++G
Sbjct: 2 GRLLGLDVGSRTVGVAVSDVFGWTSQAVEIIRINEDEKEFGIERMKELVAEQQPTGFVLG 61
Query: 82 YPFNRQQNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTSKGVE-LLLNPLDLHP 137
P N + V+ L LE+ + Y +E T+ E +L+ D
Sbjct: 62 LPKNMNNTSGPRVEAAQAYGAL-----LEETFGLPVDYQDERLTTVEAERMLVEKADASR 116
Query: 138 VEYKTILDKFAAVGILQEYLD 158
+ K ++DK AA ILQ YLD
Sbjct: 117 KKRKQVIDKLAAALILQNYLD 137
>gi|427716032|ref|YP_007064026.1| holliday junction resolvase [Calothrix sp. PCC 7507]
gi|427348468|gb|AFY31192.1| Holliday junction resolvase [Calothrix sp. PCC 7507]
Length = 158
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 6/135 (4%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
LGLD G K +G++ D IA+ ++ + R D+ E R L+ E +E ++G P+
Sbjct: 14 LGLDFGRKRIGVAGCDRTGLIATGITTIERSSFEQDV--EQLRLLVHERQVEILVMGLPY 71
Query: 85 NRQQNAA-DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143
+ + A QV+ F L+ KL Y +E TS E LL P +K +
Sbjct: 72 SMDGSLGFQARQVQKFATRLAKALKL---PVEYVDERLTSYQAEQLLIAEKRSPSRHKAL 128
Query: 144 LDKFAAVGILQEYLD 158
+D+ AA ILQ++LD
Sbjct: 129 IDRKAASLILQQWLD 143
>gi|381200849|ref|ZP_09907981.1| Holliday junction resolvase [Sphingobium yanoikuyae XLDN2-5]
Length = 157
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 68/139 (48%), Gaps = 7/139 (5%)
Query: 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 81
GR +G+DVG K +GL++ D + IASP + R K + D A + +++ ++G ++G
Sbjct: 19 GRLIGMDVGTKTIGLALCDAQWSIASPAYTVTRGKFSKDKPA--LEAFMAQQQVKGIVIG 76
Query: 82 YPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
P N N+ + + F +++ + W+E ++++ V L D
Sbjct: 77 LPLNLDGTNSPRSQASRAFAHNVADIG----LPVLLWDERWSTQAVTRTLLEADASRARR 132
Query: 141 KTILDKFAAVGILQEYLDN 159
++DK AA ILQ +D
Sbjct: 133 DELVDKLAASYILQGAIDG 151
>gi|40889964|pdb|1VHX|A Chain A, Crystal Structure Of Putative Holliday Junction Resolvase
gi|40889965|pdb|1VHX|B Chain B, Crystal Structure Of Putative Holliday Junction Resolvase
Length = 150
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 4/140 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD+G K +G+++SD A + + + D LI ++ ++ ++G+
Sbjct: 4 RILGLDLGTKTLGVALSDEXGWTAQGIETIKINEAEGDYGLSRLSELIKDYTIDKIVLGF 63
Query: 83 PFNRQQNAADAVQV-KLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + + F L T ++ W+E T+ E L D+ + K
Sbjct: 64 PKNXNGTVGPRGEASQTFAKVLETTY---NVPVVLWDERLTTXAAEKXLIAADVSRQKRK 120
Query: 142 TILDKFAAVGILQEYLDNAN 161
++DK AAV ILQ YLD+ N
Sbjct: 121 KVIDKXAAVXILQGYLDSLN 140
>gi|433775251|ref|YP_007305718.1| RNAse H-fold protein YqgF [Mesorhizobium australicum WSM2073]
gi|433667266|gb|AGB46342.1| RNAse H-fold protein YqgF [Mesorhizobium australicum WSM2073]
Length = 168
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 7/150 (4%)
Query: 10 FEQMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSL 69
EQ+ R + R GLD+GDK +G+++SD A P V++R+K L A +L
Sbjct: 6 IEQLPARLANGR-TLAGLDLGDKTIGVAVSDRGFSFAHPRPVIIRRK--FSLDAAVLLAL 62
Query: 70 ISEFNLEGFIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVEL 128
+++ N+ +G P N + Q + F+ +++ +L D+ + +W+E ++ E
Sbjct: 63 LTKENVGAVAIGLPINMDGSEGPRAQKSRAFVRNMA---RLSDLPFVFWDERLSTVAAER 119
Query: 129 LLNPLDLHPVEYKTILDKFAAVGILQEYLD 158
L +D + +D AA ILQ LD
Sbjct: 120 TLIEMDFSRAKRAGKIDSAAAAFILQGVLD 149
>gi|354806651|ref|ZP_09040132.1| putative Holliday junction resolvase [Lactobacillus curvatus CRL
705]
gi|354514835|gb|EHE86801.1| putative Holliday junction resolvase [Lactobacillus curvatus CRL
705]
Length = 145
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 72/142 (50%), Gaps = 4/142 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +G DVG + VG++ISD A + ++ ++ + + + L++E + GF++G
Sbjct: 2 RLMGFDVGSRTVGIAISDLLGWTAQGVEIIRINEDESEFGLDRVKELVAEHQVTGFVLGL 61
Query: 83 PFNRQQN-AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEY 140
P N + A++ + + LS + ++ Y +E T+ E +L+ D +
Sbjct: 62 PKNMNNSIGPRALKAQEYGAMLS--ELFPEIPVDYIDERLTTVQAERMLVEQADTSRKKR 119
Query: 141 KTILDKFAAVGILQEYLDNANR 162
K ++DK AAV ILQ YLD R
Sbjct: 120 KQVIDKLAAVMILQNYLDAHGR 141
>gi|429769003|ref|ZP_19301131.1| RNAse H domain protein, YqgF family [Brevundimonas diminuta 470-4]
gi|429188354|gb|EKY29242.1| RNAse H domain protein, YqgF family [Brevundimonas diminuta 470-4]
Length = 154
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 69/137 (50%), Gaps = 7/137 (5%)
Query: 24 FLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYP 83
+LGLD+G+ +G++ SD IASPL ++ + K + D AE ++ + I+G P
Sbjct: 19 WLGLDLGENTIGVAASDAGRIIASPLELIRKTKFSQD--AEQLFKIMDGRKVSALIIGLP 76
Query: 84 FNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
N + Q + F +L ++ + A+ +E ++ VE L++ LDL
Sbjct: 77 LNMDGSEGPRAQSCRAFARNL---ERFRPVNVAFQDERLSTTAVERFLIDELDLTRKRRA 133
Query: 142 TILDKFAAVGILQEYLD 158
++D+ AA ILQ LD
Sbjct: 134 DVVDRTAAAWILQGALD 150
>gi|15965062|ref|NP_385415.1| Holliday junction resolvase-like protein [Sinorhizobium meliloti
1021]
gi|384529020|ref|YP_005713108.1| Holliday junction resolvase [Sinorhizobium meliloti BL225C]
gi|433613082|ref|YP_007189880.1| RNAse H-fold protein YqgF [Sinorhizobium meliloti GR4]
gi|32130055|sp|Q92QL0.1|RUVX_RHIME RecName: Full=Putative Holliday junction resolvase
gi|15074241|emb|CAC45888.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
gi|333811196|gb|AEG03865.1| Holliday junction resolvase [Sinorhizobium meliloti BL225C]
gi|429551272|gb|AGA06281.1| RNAse H-fold protein YqgF [Sinorhizobium meliloti GR4]
Length = 165
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 6/135 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+G K +G+S+SD + A+P V+ R K D A+ S + + FI+G P N
Sbjct: 21 GLDLGTKTIGISVSDLGRRFATPREVIRRVKFGAD--AQALLSFAEKEKIAAFIIGLPVN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
+ Q + F+ ++ + D+ + W+E ++ E +L +D+ + +
Sbjct: 79 MDGSEGPRCQATRAFVRNMG---EKTDIPFVLWDERLSTVAAERVLIEMDVSRKKRAERI 135
Query: 145 DKFAAVGILQEYLDN 159
D AA ILQ LD
Sbjct: 136 DSAAASFILQGALDR 150
>gi|395791130|ref|ZP_10470588.1| RNAse H-fold protein YqgF [Bartonella alsatica IBS 382]
gi|395408493|gb|EJF75103.1| RNAse H-fold protein YqgF [Bartonella alsatica IBS 382]
Length = 159
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 70/145 (48%), Gaps = 15/145 (10%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEG---FIVGY 82
GLD+G K +G+++SD ++P VL RKK ED LI F+ E I+G
Sbjct: 21 GLDLGKKTIGIAVSDIGLAFSNPRPVLQRKK-----FMEDAHKLIKIFDRENVGVIIIGL 75
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N ++ Q + F+ ++ K ++ + +W+E ++ E L +D+ +
Sbjct: 76 PLNMNGSSGSRAQATRTFVSNM---KVYTEIPFVFWDERLSTIAAERSLLEMDVSRAKRA 132
Query: 142 TILDKFAAVGILQEYLDNANRKVNL 166
T +D AA ILQ L NR NL
Sbjct: 133 TRIDSAAAAFILQGAL---NRIQNL 154
>gi|284991580|ref|YP_003410134.1| Holliday junction resolvase YqgF [Geodermatophilus obscurus DSM
43160]
gi|284064825|gb|ADB75763.1| Holliday junction resolvase YqgF [Geodermatophilus obscurus DSM
43160]
Length = 222
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 69/137 (50%), Gaps = 9/137 (6%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
LG+DVG VG++ISDP +ASPL + R ++ DL + +L+ E + IVG P
Sbjct: 86 LGIDVGTVRVGVAISDPTGTLASPLETVQRARDESDL--DRIAALVVEHEVTEVIVGEPR 143
Query: 85 N-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFT--SKGVELLLNPLDLHPVEYK 141
+ + A A + + + L+ ++ + +E + + L N LD +
Sbjct: 144 HLSGASGASAKEARAYSRALAG--RIGSVPVHLVDERLSTVTAASSLRANGLDSR--RQR 199
Query: 142 TILDKFAAVGILQEYLD 158
++D+ AAV ILQ YLD
Sbjct: 200 PVIDQAAAVVILQAYLD 216
>gi|159900150|ref|YP_001546397.1| Holliday junction resolvase YqgF [Herpetosiphon aurantiacus DSM
785]
gi|159893189|gb|ABX06269.1| Holliday junction resolvase YqgF [Herpetosiphon aurantiacus DSM
785]
Length = 158
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 6/140 (4%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV 80
GR + LDVG+K +G+++ DP IAS L D +I+E + ++
Sbjct: 7 HGRIIALDVGNKRIGVAMCDPDRIIASGQPTL--PAQPTDKAYAQLLHMITEHEVVEVVI 64
Query: 81 GYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
G P R + A A V+ F L K+ ++E FTS E L + + +
Sbjct: 65 GLPLTLRGEVGAQAKAVQAFSRGLEKRTKI---PITLYDERFTSVEAERSLEAMGIKKSK 121
Query: 140 YKTILDKFAAVGILQEYLDN 159
++ +D+ AA+ ILQ+Y+ +
Sbjct: 122 HRDHVDELAAILILQDYMSS 141
>gi|383824422|ref|ZP_09979605.1| Holliday junction resolvase-like protein [Mycobacterium xenopi
RIVM700367]
gi|383337435|gb|EID15812.1| Holliday junction resolvase-like protein [Mycobacterium xenopi
RIVM700367]
Length = 166
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 9/152 (5%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDL--MAEDFRSLISEFNLEGF 78
RGR LG+DVG +G++ SDP +A+P+ + R ++ + +AE L +E
Sbjct: 19 RGRRLGVDVGSVRIGVASSDPDGILATPVETVRRDRSGAHVRRLAE----LAAELGAVEV 74
Query: 79 IVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
IVG P + + + + D A +++ + +E T+ + L +
Sbjct: 75 IVGLPRTLADRTGASARDAIGLADALA-RRIAPIPVRLADERLTTVSAQRSLRAAGISAK 133
Query: 139 EYKTILDKFAAVGILQEYLDNANRKVNLKANV 170
+ ++D+ AAV ILQ +LD R+ L V
Sbjct: 134 SQRAVIDQAAAVAILQGWLD--QRRATLGGQV 163
>gi|372325178|ref|ZP_09519767.1| Putative Holliday junction resolvase [Oenococcus kitaharae DSM
17330]
gi|366983986|gb|EHN59385.1| Putative Holliday junction resolvase [Oenococcus kitaharae DSM
17330]
Length = 144
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 66/144 (45%), Gaps = 3/144 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG + VG++ SDP AS + ++ ++ + + LI E G ++G
Sbjct: 2 RILGLDVGSRTVGVAQSDPLGWTASSVEIIRINEDKGEFGLDRLAQLIDEKKATGIVIGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTS-KGVELLLNPLDLHPVEYK 141
P N + V + A K + Y +E TS + +L+ DL + K
Sbjct: 62 PKNMNNSEGPRVDASRRYGRMVA--KRFGLPIDYEDERLTSVQANRMLIEEADLSREKRK 119
Query: 142 TILDKFAAVGILQEYLDNANRKVN 165
++D AA ILQ YLD + VN
Sbjct: 120 KVIDSLAAQLILQNYLDRKGKLVN 143
>gi|317050665|ref|YP_004111781.1| Holliday junction resolvase YqgF [Desulfurispirillum indicum S5]
gi|316945749|gb|ADU65225.1| Holliday junction resolvase YqgF [Desulfurispirillum indicum S5]
Length = 152
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 77/150 (51%), Gaps = 12/150 (8%)
Query: 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 81
GR L LD+G + VG+++SD + ++AS L L R+ M I E+ ++ +VG
Sbjct: 2 GRILALDIGSRRVGVAVSDSQRRMASTLKTLERQD--YQQMLHRIGKYIEEYGVDLLVVG 59
Query: 82 YPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAY----WNEGF-TSKGVELLLNPLDLH 136
P + + + +++ + ++L++ ++A +E F TSK + L+ DL
Sbjct: 60 IPLDSRDGSFTPKAMEIG----AEARQLQE-RFAVPVIGVDERFSTSKSNDFLIGVADLS 114
Query: 137 PVEYKTILDKFAAVGILQEYLDNANRKVNL 166
+ K ++D AA ILQ YLD+ + + L
Sbjct: 115 RKKRKKVVDTMAAQNILQGYLDDPAKGIEL 144
>gi|332637231|ref|ZP_08416094.1| Holliday junction resolvase-like protein [Weissella cibaria KACC
11862]
Length = 144
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 5/139 (3%)
Query: 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 81
GR +GLDVG + VG+++SD A + ++ ++ + + L+++F GF++G
Sbjct: 2 GRVMGLDVGSRTVGVAVSDLLGWTAQGVEIIRINEDEKEFGIARMKELVAQFQPTGFVLG 61
Query: 82 YPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVE 139
P N + V + + D L+ T L + +E T+ E +L+ D +
Sbjct: 62 LPKNMNNTSGPRVDAARAYGDLLTETFGL---PIDFQDERLTTVEAERMLVEEADASRKK 118
Query: 140 YKTILDKFAAVGILQEYLD 158
K ++DK AA ILQ YLD
Sbjct: 119 RKQVIDKLAAALILQNYLD 137
>gi|295396123|ref|ZP_06806306.1| possible crossover junction endodeoxyribonuclease [Brevibacterium
mcbrellneri ATCC 49030]
gi|294971064|gb|EFG46956.1| possible crossover junction endodeoxyribonuclease [Brevibacterium
mcbrellneri ATCC 49030]
Length = 147
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 11/150 (7%)
Query: 20 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFI 79
+RGR LG+DVG VG++ SDP +ASPL V+ R+ ++ + ++ E + +
Sbjct: 2 RRGRRLGIDVGAVRVGIAHSDPDGILASPLEVVNRRGGD-NIALRRIQEIVEEVDPVELV 60
Query: 80 VGYPFN----RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDL 135
+G P + +Q+A A + I D + + Y +E FT+ L+L
Sbjct: 61 IGDPTSLDGKARQSADKARRFAQKIVDRTG------LPVRYVDERFTTTQAHLMLQEAGK 114
Query: 136 HPVEYKTILDKFAAVGILQEYLDNANRKVN 165
+ + +D AAV ILQ LD R+ N
Sbjct: 115 TSKQRRETVDAQAAVVILQTALDALAREDN 144
>gi|302525837|ref|ZP_07278179.1| Holliday junction resolvase YqgF [Streptomyces sp. AA4]
gi|302434732|gb|EFL06548.1| Holliday junction resolvase YqgF [Streptomyces sp. AA4]
Length = 166
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 75/146 (51%), Gaps = 14/146 (9%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKK---NTIDLMAEDFRSLISEFNLEG 77
RGR L +DVG VG+++SDP +ASPL L R + +D +AE L++E +
Sbjct: 19 RGRRLAVDVGSVRVGVALSDPAPVLASPLVTLSRDAKDDSDLDRLAE----LVTEHEVVE 74
Query: 78 FIVGYP---FNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLD 134
IVG P NRQ A A + + L+ ++ D+ +E T+ +L+
Sbjct: 75 VIVGLPRTLANRQ--GAAADLALAYAEKLAG--RVGDVPVRLADERLTTVTASRMLSQRG 130
Query: 135 LHPVEYKTILDKFAAVGILQEYLDNA 160
+ + + ++D+ AAV ILQ +LD A
Sbjct: 131 VKGRKQRAVVDQAAAVEILQAWLDAA 156
>gi|294853606|ref|ZP_06794278.1| Holliday junction resolvase [Brucella sp. NVSL 07-0026]
gi|294819261|gb|EFG36261.1| Holliday junction resolvase [Brucella sp. NVSL 07-0026]
Length = 162
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 6/134 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+G K +GL++SD A P V+ R K TID A+ + + ++G P N
Sbjct: 21 GLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFTID--AQVLLKALETDKVGVIVIGLPMN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
A VQ + F+ + + L D+ + +W+E ++ E L +D+ + +
Sbjct: 79 TDGTAGPRVQATRAFVRTM---QPLTDLSFVFWDERLSTVAAERALIGMDVSRGKRADRI 135
Query: 145 DKFAAVGILQEYLD 158
D AA ILQ LD
Sbjct: 136 DSAAAAFILQGALD 149
>gi|292670704|ref|ZP_06604130.1| YqgF family crossover junction endodeoxyribonuclease [Selenomonas
noxia ATCC 43541]
gi|292647650|gb|EFF65622.1| YqgF family crossover junction endodeoxyribonuclease [Selenomonas
noxia ATCC 43541]
Length = 137
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 73/145 (50%), Gaps = 10/145 (6%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYP- 83
+ LD+GD +G+++SD A + + R+ + DL LI E+ + + G P
Sbjct: 1 MSLDIGDATIGVAVSDLLGLTAQGVETIRRRDLSDDL--NRLGVLIQEYEADALVAGLPK 58
Query: 84 -FNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
N Q+ A+ V+ F+ D A ++ M+ YW+E ++ L D+ + +
Sbjct: 59 HMNGQEGERCAL-VRAFMAD--AAERFPMMEIHYWDERLSTVAASRTLLEGDVSRKKRRK 115
Query: 143 ILDKFAAVGILQEYLDNANRKVNLK 167
++DK AAV ILQ +LD R+ +LK
Sbjct: 116 VIDKMAAVYILQGFLD---RQQHLK 137
>gi|291519256|emb|CBK74477.1| conserved hypothetical protein TIGR00250 [Butyrivibrio fibrisolvens
16/4]
Length = 142
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 9/142 (6%)
Query: 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKK-NTIDLMAEDFRSLISEFNLEGFIV 80
R LGLD G K VG++ISDP A + R++ + + + + E+ +E I+
Sbjct: 2 SRILGLDYGTKTVGVAISDPLLLTAQEFETITRERASALRHTLVRIKEICEEYQVEKIIL 61
Query: 81 GYPFNRQQNAADAVQVKLFIDDLSATKKLE---DMKYAYWNEGFTSKGVELLLNPLDLHP 137
GYP N + + D L K LE D+ +E T+ + +L +
Sbjct: 62 GYPRNMDDSEGFRCE-----DTLEFKKLLEKRVDIPIELVDERLTTVYADEILEESGVAK 116
Query: 138 VEYKTILDKFAAVGILQEYLDN 159
+ K ++D+ AA ILQ+YLDN
Sbjct: 117 KDRKKVIDQIAAAIILQDYLDN 138
>gi|443632058|ref|ZP_21116238.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
gi|443348173|gb|ELS62230.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
Length = 138
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 8/142 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD+G K +G+++SD A + + + D LI + ++ ++G+
Sbjct: 2 RILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLSRLSELIKDHTIDKIVLGF 61
Query: 83 PFNRQQNAA---DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
P N +A Q F L T ++ W+E T+ E +L D+ +
Sbjct: 62 PKNMNGTVGPRGEASQT--FAKVLETTY---NVPVVLWDERLTTMAAEKMLIAADVSRQK 116
Query: 140 YKTILDKFAAVGILQEYLDNAN 161
K ++DK AAV ILQ YLD+ N
Sbjct: 117 RKKVIDKMAAVMILQGYLDSLN 138
>gi|407979631|ref|ZP_11160442.1| Holliday junction resolvase-like protein [Bacillus sp. HYC-10]
gi|407413736|gb|EKF35422.1| Holliday junction resolvase-like protein [Bacillus sp. HYC-10]
Length = 138
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 14/145 (9%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD+G K +G++ISD A + + + D +I+++ + ++G+
Sbjct: 2 RILGLDLGTKTLGVAISDEMGWTAQGIETIKIDEAGGDFGLSRLSEIITQYGADKIVLGF 61
Query: 83 PFNRQQNAA---DAVQVKLFIDDLSATKKLED---MKYAYWNEGFTSKGVELLLNPLDLH 136
P N +A Q S K LE+ + W+E ++ E +L D+
Sbjct: 62 PKNMNGTVGPRGEASQ--------SFAKVLENTYNVPVVLWDERLSTMAAEKMLISADVS 113
Query: 137 PVEYKTILDKFAAVGILQEYLDNAN 161
+ K ++DK AAV ILQ YLD+ N
Sbjct: 114 RQKRKKVIDKMAAVMILQGYLDSLN 138
>gi|227877598|ref|ZP_03995652.1| crossover junction endodeoxyribonuclease [Lactobacillus crispatus
JV-V01]
gi|256844559|ref|ZP_05550045.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN]
gi|256849052|ref|ZP_05554485.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US]
gi|262047534|ref|ZP_06020489.1| conserved hypothetical protein [Lactobacillus crispatus MV-3A-US]
gi|293381588|ref|ZP_06627575.1| RNAse H-fold protein YqgF [Lactobacillus crispatus 214-1]
gi|295692278|ref|YP_003600888.1| holliday junction resolvase [Lactobacillus crispatus ST1]
gi|312977881|ref|ZP_07789627.1| putative Holliday junction resolvase [Lactobacillus crispatus
CTV-05]
gi|423318187|ref|ZP_17296084.1| RNAse H-fold protein YqgF [Lactobacillus crispatus FB049-03]
gi|423320497|ref|ZP_17298369.1| RNAse H-fold protein YqgF [Lactobacillus crispatus FB077-07]
gi|227862792|gb|EEJ70257.1| crossover junction endodeoxyribonuclease [Lactobacillus crispatus
JV-V01]
gi|256613637|gb|EEU18840.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN]
gi|256713828|gb|EEU28816.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US]
gi|260572110|gb|EEX28675.1| conserved hypothetical protein [Lactobacillus crispatus MV-3A-US]
gi|290921858|gb|EFD98873.1| RNAse H-fold protein YqgF [Lactobacillus crispatus 214-1]
gi|295030384|emb|CBL49863.1| Holliday junction resolvase [Lactobacillus crispatus ST1]
gi|310895188|gb|EFQ44256.1| putative Holliday junction resolvase [Lactobacillus crispatus
CTV-05]
gi|405596676|gb|EKB70009.1| RNAse H-fold protein YqgF [Lactobacillus crispatus FB049-03]
gi|405605101|gb|EKB78168.1| RNAse H-fold protein YqgF [Lactobacillus crispatus FB077-07]
Length = 142
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 73/142 (51%), Gaps = 12/142 (8%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K VG++ISD A L + ++ + + L+ ++ ++GF++G
Sbjct: 2 RLLGLDVGSKTVGVAISDELGITAQKLETIQIDESRYNFGMRPLKKLVRQYEVDGFVLGL 61
Query: 83 PFNRQQNAADAV-QVKLFIDDLSATKKLED---MKYAYWNEGFTS-KGVELLLNPLDLHP 137
P N + +V + K + K+LE+ + Y +E T+ + +L+ +H
Sbjct: 62 PKNMDGTSGSSVARSKAY------GKRLEEKFGLPVHYSDERLTTIESRRVLVEDAGIHD 115
Query: 138 V-EYKTILDKFAAVGILQEYLD 158
+ K ++D+ AAV ILQ YLD
Sbjct: 116 RKKRKQVIDQMAAVLILQNYLD 137
>gi|83594508|ref|YP_428260.1| Holliday junction resolvase YqgF [Rhodospirillum rubrum ATCC 11170]
gi|386351267|ref|YP_006049515.1| Holliday junction resolvase YqgF [Rhodospirillum rubrum F11]
gi|146325602|sp|Q2RPH2.1|RUVX_RHORT RecName: Full=Putative Holliday junction resolvase
gi|83577422|gb|ABC23973.1| Holliday junction resolvase YqgF [Rhodospirillum rubrum ATCC 11170]
gi|346719703|gb|AEO49718.1| Holliday junction resolvase YqgF [Rhodospirillum rubrum F11]
Length = 161
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 70/141 (49%), Gaps = 7/141 (4%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
LGLD+G + +G++ SD + +A+P+ + R+K T+D+ ++ +L G ++G P
Sbjct: 20 LGLDLGTRTIGVATSDVRLTLATPIITIKRRKFTLDV--QELFALADGRAAAGLVLGLPV 77
Query: 85 NRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGV-ELLLNPLDLHPVEYKT 142
+ Q + F +L A L D+ W+E ++ V L+ D+
Sbjct: 78 EMDGSEGPRCQATRAFARNLLA---LRDLPVLLWDERLSTAAVNRFLVGEADMTRARRAE 134
Query: 143 ILDKFAAVGILQEYLDNANRK 163
++D+ AA ILQ LD +R+
Sbjct: 135 VVDRAAAAYILQGALDALDRQ 155
>gi|375309831|ref|ZP_09775111.1| holliday junction resolvase [Paenibacillus sp. Aloe-11]
gi|375078195|gb|EHS56423.1| holliday junction resolvase [Paenibacillus sp. Aloe-11]
Length = 135
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 4/134 (2%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLD GD+ +G+++SD A L V+ R+ + D LI + + +VG P
Sbjct: 1 MGLDYGDRRIGVAVSDAFGWTAQGLEVIERRGD--DSEFGKIADLIRDHEIGEVVVGLPK 58
Query: 85 NRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
N N + ++ I+ + K+L + W+E T++ E L D+ + K ++
Sbjct: 59 N--MNGTVGPRGEICIEFANRLKELLGLPVHLWDERLTTRSAERALLEADVSRKKRKQVV 116
Query: 145 DKFAAVGILQEYLD 158
DK AA ILQ YLD
Sbjct: 117 DKLAASLILQNYLD 130
>gi|326798192|ref|YP_004316011.1| Holliday junction resolvase [Sphingobacterium sp. 21]
gi|326548956|gb|ADZ77341.1| Holliday junction resolvase [Sphingobacterium sp. 21]
Length = 137
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 72/140 (51%), Gaps = 14/140 (10%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R + D G K +G++++DP IA+ L+ + K+ I E + +S+ +E F+VG
Sbjct: 2 RIMAFDYGTKRIGVAVTDPLQIIATALTT-IHPKDVI----EYLKKYVSQEQVESFVVGM 56
Query: 83 PFNRQQNAAD---AVQVKLFIDDLSATKKLEDMKYAYWNEGFTSK--GVELLLNPLDLHP 137
P +Q + +D AV VK FI+ L K M +E FTSK + + L
Sbjct: 57 P--KQLDGSDSQSAVHVKGFINLLK--KSFPQMPIVTMDERFTSKMASASIAESGLRRSK 112
Query: 138 VEYKTILDKFAAVGILQEYL 157
+ K ++D +AV ILQ+YL
Sbjct: 113 RQEKGLVDAISAVIILQDYL 132
>gi|269121338|ref|YP_003309515.1| Holliday junction resolvase YqgF [Sebaldella termitidis ATCC 33386]
gi|268615216|gb|ACZ09584.1| Holliday junction resolvase YqgF [Sebaldella termitidis ATCC 33386]
Length = 137
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 75/138 (54%), Gaps = 7/138 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
++LGLDVGD +G++ SD +A+PL V+ R N D + + L+ + N G +VG
Sbjct: 3 KYLGLDVGDVRIGVAKSDILGILATPLEVINR--NDTDPVKR-IKELLQQENTNGLVVGI 59
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEY 140
P + V+ V FI++L K +++++ +E +T+ E L N +P E
Sbjct: 60 PKSLDGTVKRQVEKVNEFIEELK--KNIDNLEIITVDERYTTVEAEHYLRNYSKKNPRER 117
Query: 141 KTILDKFAAVGILQEYLD 158
+ ++D AA ILQ++LD
Sbjct: 118 RKVVDMVAASIILQKFLD 135
>gi|254303693|ref|ZP_04971051.1| possible Holliday junction resolvase [Fusobacterium nucleatum
subsp. polymorphum ATCC 10953]
gi|148323885|gb|EDK89135.1| possible Holliday junction resolvase [Fusobacterium nucleatum
subsp. polymorphum ATCC 10953]
Length = 138
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 78/139 (56%), Gaps = 9/139 (6%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKK-NTIDLMAEDFRSLISEFNLEGFIVG 81
R++ LD+GD +G++ SD IASPL + RKK ++ +AE + E + +VG
Sbjct: 3 RYIALDIGDVRIGVARSDIMGIIASPLETINRKKIKSVKRIAE----ICKENDTNLIVVG 58
Query: 82 YPFNRQ-QNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH-PVE 139
P + + A +V+ +I+ L +++E+++ +E F++ + +L L+ + +E
Sbjct: 59 IPKSLDGEEKRQAEKVREYIEKLK--REIENLEIIEVDERFSTVIADNILKELNKNGAIE 116
Query: 140 YKTILDKFAAVGILQEYLD 158
+ ++DK AA ILQ YLD
Sbjct: 117 KRKVVDKVAASIILQTYLD 135
>gi|433463848|ref|ZP_20421381.1| Holliday junction resolvase [Halobacillus sp. BAB-2008]
gi|432186971|gb|ELK44331.1| Holliday junction resolvase [Halobacillus sp. BAB-2008]
Length = 138
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 4/136 (2%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLDVG+K +G++ISD A L+ L + + ++ +I + + +VG+P
Sbjct: 4 IGLDVGEKTIGIAISDAFGWTAQGLTTLRWDEKDFNTAKDNLAEVIRDHEVTEAVVGFPK 63
Query: 85 NRQQNAADAVQV-KLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143
N + + F L +L+ W+E T+ E +L D+ + K +
Sbjct: 64 NMNGTVGPRGEASQKFAAWLEEEFRLQ---THLWDERLTTMAAERVLIDADVSRKKRKKV 120
Query: 144 LDKFAAVGILQEYLDN 159
+DK AAV ILQ YLD+
Sbjct: 121 IDKMAAVMILQGYLDS 136
>gi|283770690|ref|ZP_06343582.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus
H19]
gi|283460837|gb|EFC07927.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus
H19]
Length = 142
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 67/144 (46%), Gaps = 15/144 (10%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
+ LGLDVG + VG++ISD A L L + +L + +I + N+ ++G
Sbjct: 5 KILGLDVGSRTVGIAISDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVSTVVIGL 64
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAY-------WNEGFTSKGVELLLNPLDL 135
P N + F + S T K E + AY W+E ++ E L D+
Sbjct: 65 PKNMNNSIG-------FRGEASLTYK-EKLLEAYPSIEIVMWDERLSTMAAERSLLEADV 116
Query: 136 HPVEYKTILDKFAAVGILQEYLDN 159
+ K ++DK AAV ILQ YLD+
Sbjct: 117 SRQKRKQVIDKMAAVFILQGYLDS 140
>gi|451941950|ref|YP_007462587.1| putative holliday junction resolvase [Bartonella vinsonii subsp.
berkhoffii str. Winnie]
gi|451901337|gb|AGF75799.1| putative holliday junction resolvase [Bartonella vinsonii subsp.
berkhoffii str. Winnie]
Length = 159
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 67/137 (48%), Gaps = 12/137 (8%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEG---FIVGY 82
GLD+G K +G+++SD ++P VL RKK ED +LI F+ E I+G
Sbjct: 21 GLDLGKKTIGIAVSDMGLTFSNPRPVLQRKK-----FIEDAHTLIKIFDRENVGVIIIGL 75
Query: 83 PFNRQ-QNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N N A + F+ ++ A ++ + +W+E ++ E L +++ +
Sbjct: 76 PLNMNGSNGPRAQATRTFVSNMGAYTQI---PFVFWDERLSTIAAERSLLEMNVSRAKRA 132
Query: 142 TILDKFAAVGILQEYLD 158
T +D AA ILQ L+
Sbjct: 133 TRIDSAAAAFILQGALN 149
>gi|417644391|ref|ZP_12294384.1| RNAse H domain protein, YqgF family [Staphylococcus warneri VCU121]
gi|445059489|ref|YP_007384893.1| Holliday junction resolvase-like protein [Staphylococcus warneri
SG1]
gi|330684841|gb|EGG96531.1| RNAse H domain protein, YqgF family [Staphylococcus epidermidis
VCU121]
gi|443425546|gb|AGC90449.1| Holliday junction resolvase-like protein [Staphylococcus warneri
SG1]
Length = 142
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 7/147 (4%)
Query: 13 MLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISE 72
MLK K+ LGLDVG K VG++ISD A L L +N +L + +I +
Sbjct: 1 MLKHKI------LGLDVGSKTVGIAISDLMGWTAQGLDTLRIDENNNELGIDQLVDIIKK 54
Query: 73 FNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNP 132
+ ++G P N + + L + + L ++ W+E ++ E L
Sbjct: 55 HGVGTVVIGLPKNMNNSIGFRGEASLQYKE-KLQEALPSIEIIMWDERLSTMAAEKSLLE 113
Query: 133 LDLHPVEYKTILDKFAAVGILQEYLDN 159
D+ + K ++DK AAV ILQ YLD+
Sbjct: 114 ADVSRQKRKKVIDKMAAVFILQGYLDS 140
>gi|154504518|ref|ZP_02041256.1| hypothetical protein RUMGNA_02022 [Ruminococcus gnavus ATCC 29149]
gi|336434368|ref|ZP_08614164.1| Holliday junction resolvase [Lachnospiraceae bacterium 2_1_58FAA]
gi|153795000|gb|EDN77420.1| RNAse H domain protein, YqgF family [Ruminococcus gnavus ATCC
29149]
gi|336013914|gb|EGN43783.1| Holliday junction resolvase [Lachnospiraceae bacterium 2_1_58FAA]
Length = 148
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 3/138 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKK-NTIDLMAEDFRSLISEFNLEGFIVG 81
R +GLD G K VG++ISD A + + RK+ N + L+ E+ ++ ++G
Sbjct: 2 RIMGLDYGTKTVGVAISDALGLTAQGIETIQRKEENKLRRTLARIEELVREYEVDTIVLG 61
Query: 82 YPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
+P + + + + L ++ + D+ W+E T+ E L + K
Sbjct: 62 FPKHMNNDVGERAKKSLEFKEMLVRRTGLDV--VMWDERLTTVEAERTLIESQVRRENRK 119
Query: 142 TILDKFAAVGILQEYLDN 159
+DK AAV ILQ YLD+
Sbjct: 120 QYIDKIAAVFILQGYLDS 137
>gi|395766682|ref|ZP_10447221.1| RNAse H-fold protein YqgF [Bartonella doshiae NCTC 12862]
gi|395415806|gb|EJF82233.1| RNAse H-fold protein YqgF [Bartonella doshiae NCTC 12862]
Length = 159
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 12/137 (8%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGF---IVGY 82
GLD+G K +G++ISD + ++P VL RKK T ED +LI FN E ++G
Sbjct: 21 GLDLGTKTIGIAISDKRLFFSNPRPVLKRKKFT-----EDANTLIQIFNRENVGVAVIGL 75
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N ++ Q + F+ ++ K+ + +W+E ++ E + + + +
Sbjct: 76 PLNMNGSSGPRAQATRTFVSTMATRTKIP---FVFWDERLSTIAAERIFLEMGISRTKRA 132
Query: 142 TILDKFAAVGILQEYLD 158
+D AA ILQ L+
Sbjct: 133 PRIDSAAAAFILQGALN 149
>gi|259501302|ref|ZP_05744204.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
gi|302190974|ref|ZP_07267228.1| Holliday junction resolvase-like protein [Lactobacillus iners AB-1]
gi|309803606|ref|ZP_07697698.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
11V1-d]
gi|309805305|ref|ZP_07699356.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
09V1-c]
gi|309805981|ref|ZP_07700007.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
03V1-b]
gi|309807412|ref|ZP_07701375.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
01V1-a]
gi|309809657|ref|ZP_07703513.1| RNAse H domain protein, YqgF family [Lactobacillus iners SPIN
2503V10-D]
gi|312870703|ref|ZP_07730810.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
3008A-a]
gi|312872863|ref|ZP_07732925.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
2062A-h1]
gi|312873741|ref|ZP_07733786.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
2052A-d]
gi|312875199|ref|ZP_07735212.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
2053A-b]
gi|315653053|ref|ZP_07905981.1| crossover junction endodeoxyribonuclease [Lactobacillus iners ATCC
55195]
gi|325911934|ref|ZP_08174337.1| RNAse H domain protein, YqgF family [Lactobacillus iners UPII
143-D]
gi|325913722|ref|ZP_08176083.1| RNAse H domain protein, YqgF family [Lactobacillus iners UPII 60-B]
gi|329919583|ref|ZP_08276572.1| RNAse H domain protein, YqgF family [Lactobacillus iners SPIN
1401G]
gi|349612116|ref|ZP_08891343.1| Holliday junction resolvase [Lactobacillus sp. 7_1_47FAA]
gi|259167272|gb|EEW51767.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
gi|308164354|gb|EFO66609.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
11V1-d]
gi|308165381|gb|EFO67613.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
09V1-c]
gi|308167584|gb|EFO69737.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
03V1-b]
gi|308169334|gb|EFO71389.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
01V1-a]
gi|308170017|gb|EFO72054.1| RNAse H domain protein, YqgF family [Lactobacillus iners SPIN
2503V10-D]
gi|311089306|gb|EFQ47737.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
2053A-b]
gi|311090739|gb|EFQ49138.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
2052A-d]
gi|311091597|gb|EFQ49979.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
2062A-h1]
gi|311093715|gb|EFQ52052.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
3008A-a]
gi|315489588|gb|EFU79222.1| crossover junction endodeoxyribonuclease [Lactobacillus iners ATCC
55195]
gi|325476236|gb|EGC79399.1| RNAse H domain protein, YqgF family [Lactobacillus iners UPII
143-D]
gi|325476922|gb|EGC80073.1| RNAse H domain protein, YqgF family [Lactobacillus iners UPII 60-B]
gi|328937388|gb|EGG33810.1| RNAse H domain protein, YqgF family [Lactobacillus iners SPIN
1401G]
gi|348609132|gb|EGY59093.1| Holliday junction resolvase [Lactobacillus sp. 7_1_47FAA]
Length = 143
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 7/146 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K VG+++SD A + + ++ + + L+ E+ + GF+VG
Sbjct: 2 RLLGLDVGSKTVGVAVSDALGITAQEVETIPIDESKYNFGMRRVKQLVREYEVSGFVVGL 61
Query: 83 PFNRQQNAADAVQVKL-FIDDLSATKKLEDMKYAYWNEGFTS-KGVELLLNPLDLHP-VE 139
P N ++ Q L + + L A K+ Y +E T+ + +L+ + V
Sbjct: 62 PKNMDGTCGESAQRCLDYGERLKAKFKI---PVYYSDERLTTIQAKRILVEEAGISDRVA 118
Query: 140 YKTILDKFAAVGILQEYLDNANRKVN 165
K I+D+ AAV ILQ +L+ A RK N
Sbjct: 119 RKKIIDQMAAVLILQNFLE-AKRKDN 143
>gi|306841755|ref|ZP_07474441.1| conserved hypothetical protein [Brucella sp. BO2]
gi|306288160|gb|EFM59547.1| conserved hypothetical protein [Brucella sp. BO2]
Length = 162
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 6/135 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+G K +GL++SD A P V+ R K TID A+ + + ++G P N
Sbjct: 21 GLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFTID--AQVLLKALETDKVGVIVIGLPMN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
A VQ + F+ + + L D+ + +W+E ++ E L +D+ + +
Sbjct: 79 MDGTAGPRVQATRAFVRTM---QPLTDLPFVFWDERLSTVAAERALIGMDVSRGKRAERI 135
Query: 145 DKFAAVGILQEYLDN 159
D AA ILQ LD
Sbjct: 136 DSAAAAFILQGALDR 150
>gi|90417721|ref|ZP_01225633.1| conserved hypothetical protein [Aurantimonas manganoxydans
SI85-9A1]
gi|90337393|gb|EAS51044.1| conserved hypothetical protein [Aurantimonas manganoxydans
SI85-9A1]
Length = 156
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 6/134 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+G K +GL++SD + A+P VL R K T D A + ++E N+ G ++G P N
Sbjct: 21 GLDLGTKTIGLAVSDRGQRFATPRKVLRRTKFTAD--ANALVAALNEDNIVGIVIGLPLN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
+ Q + F+ + S + ++ W+E ++ E L D+ + +
Sbjct: 79 MDGSEGPRAQATRAFLRNYS---RFDERPVLLWDERLSTVAAERGLLEADVSRKKRAERI 135
Query: 145 DKFAAVGILQEYLD 158
D AA ILQ LD
Sbjct: 136 DSAAASFILQGALD 149
>gi|154500404|ref|ZP_02038442.1| hypothetical protein BACCAP_04071 [Bacteroides capillosus ATCC
29799]
gi|150270909|gb|EDM98192.1| RNAse H domain protein, YqgF family [Pseudoflavonifractor
capillosus ATCC 29799]
Length = 139
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 67/135 (49%), Gaps = 4/135 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R + +D GD G++ISDP +A +V+ +K+ +++AE+ L+ E +E ++G+
Sbjct: 2 RIMAIDYGDARTGIAISDPTGLLAGYTTVIHSRKS--EVVAEEIARLVKEHGVEELVMGF 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P R + + + +L+ ++ + W+E T+ +L+ ++K
Sbjct: 60 P--RNMDGTEGPRAELYRAFAQQVGQVTGLTPVLWDERRTTVEAHNILHASGKRMKQHKK 117
Query: 143 ILDKFAAVGILQEYL 157
+D AA IL+ YL
Sbjct: 118 TVDAVAATLILEGYL 132
>gi|300088456|ref|YP_003758978.1| Holliday junction resolvase YqgF [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299528189|gb|ADJ26657.1| Holliday junction resolvase YqgF [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 143
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 12/142 (8%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVGDK+VG+++SDP IA PL++L R D AE L+ E + ++G
Sbjct: 4 RVIGLDVGDKWVGVALSDPMGVIARPLTILERCDEITD--AEAVVRLVGEHDAARVVIGL 61
Query: 83 PFNRQQNAADAVQ---VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
P R N Q V+ F L++ L D+ + +E F++ + ++ +
Sbjct: 62 P--RLLNGVVGTQAERVQYFARRLAS---LTDVPVIFQDERFSTASAKDIMKSNRRYRKG 116
Query: 140 Y--KTILDKFAAVGILQEYLDN 159
+ + D AA ILQ++LD
Sbjct: 117 FYSRERDDAVAAAVILQDWLDE 138
>gi|407278266|ref|ZP_11106736.1| Holliday junction resolvase-like protein [Rhodococcus sp. P14]
Length = 173
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 7/150 (4%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFR---SLISEFNLEG 77
RGR +G+DVG +G++ SDP +A+P+ + R K A D R +++E+
Sbjct: 17 RGRRIGIDVGSVRIGVASSDPDGILATPVETVPRSKER-GPDAPDIRRIVDIVTEYEAVE 75
Query: 78 FIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH 136
IVG P R + A + F L ++L + +E FT+ L +
Sbjct: 76 VIVGLPQTLRGEPGKAAKLARDFAGRLR--RRLTGIPVRMADERFTTVTAARALRESGVS 133
Query: 137 PVEYKTILDKFAAVGILQEYLDNANRKVNL 166
+ ++D+ AAV ILQ +LD + VN+
Sbjct: 134 ARGARPVIDQAAAVAILQGWLDERSAVVNV 163
>gi|334315850|ref|YP_004548469.1| Holliday junction resolvase YqgF [Sinorhizobium meliloti AK83]
gi|407720251|ref|YP_006839913.1| holliday junction resolvase-like protein [Sinorhizobium meliloti
Rm41]
gi|418403243|ref|ZP_12976737.1| Holliday junction resolvase-like protein [Sinorhizobium meliloti
CCNWSX0020]
gi|334094844|gb|AEG52855.1| Holliday junction resolvase YqgF [Sinorhizobium meliloti AK83]
gi|359502785|gb|EHK75353.1| Holliday junction resolvase-like protein [Sinorhizobium meliloti
CCNWSX0020]
gi|407318483|emb|CCM67087.1| Holliday junction resolvase-like protein [Sinorhizobium meliloti
Rm41]
Length = 165
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 6/135 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+G K +G+S+SD + A+P V+ R K D A+ S + + FI+G P N
Sbjct: 21 GLDLGTKTIGISVSDLGRRFATPREVIRRVKFGAD--AQALLSFAEKEKIAAFIIGLPVN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
+ Q + F+ + + D+ + W+E ++ E +L +D+ + +
Sbjct: 79 MDGSEGPRCQATRAFVRTMG---EKTDIPFVLWDERLSTVAAERVLIEMDVSRKKRAERI 135
Query: 145 DKFAAVGILQEYLDN 159
D AA ILQ LD
Sbjct: 136 DSAAASFILQGALDR 150
>gi|312870461|ref|ZP_07730581.1| RNAse H domain protein, YqgF family [Lactobacillus oris PB013-T2-3]
gi|417885124|ref|ZP_12529283.1| RNAse H domain protein, YqgF family [Lactobacillus oris F0423]
gi|311094018|gb|EFQ52342.1| RNAse H domain protein, YqgF family [Lactobacillus oris PB013-T2-3]
gi|341596420|gb|EGS39023.1| RNAse H domain protein, YqgF family [Lactobacillus oris F0423]
Length = 147
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 2/144 (1%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K VG+++SDP A + ++ ++ + L+ + + GF++G
Sbjct: 2 RLLGLDVGSKTVGIAVSDPLGWTAQAVEIIPIDEDEEVFGLDRVAELVDKEQVAGFVLGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTS-KGVELLLNPLDLHPVEYK 141
P N V +L ++ + + +E T+ + +L+ D+ + K
Sbjct: 62 PKNMNNTEGPRVAASKHYGEL-LQERFPQIPIDFQDERLTTVEAHRMLVEEADISRAKQK 120
Query: 142 TILDKFAAVGILQEYLDNANRKVN 165
++D+ AA ILQ YLD R V
Sbjct: 121 KVIDEVAATFILQSYLDRHGRLVQ 144
>gi|265985435|ref|ZP_06098170.1| conserved hypothetical protein [Brucella sp. 83/13]
gi|306839007|ref|ZP_07471828.1| conserved hypothetical protein [Brucella sp. NF 2653]
gi|264664027|gb|EEZ34288.1| conserved hypothetical protein [Brucella sp. 83/13]
gi|306405913|gb|EFM62171.1| conserved hypothetical protein [Brucella sp. NF 2653]
Length = 162
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 6/134 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+G K +GL++SD A P V+ R K TID A+ + + ++G P N
Sbjct: 21 GLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFTID--AQVLLKALETDKVGVIVIGLPMN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
A VQ + F+ + + L D+ + +W+E ++ E L +D+ + +
Sbjct: 79 MDGTAGPRVQATRAFVRTM---QPLTDLPFVFWDERLSTVAAERALIGMDVSRGKRAERI 135
Query: 145 DKFAAVGILQEYLD 158
D AA ILQ LD
Sbjct: 136 DSAAAAFILQGALD 149
>gi|188996418|ref|YP_001930669.1| Holliday junction resolvase YqgF [Sulfurihydrogenibium sp. YO3AOP1]
gi|226695309|sp|B2V842.1|RUVX_SULSY RecName: Full=Putative Holliday junction resolvase
gi|188931485|gb|ACD66115.1| Holliday junction resolvase YqgF [Sulfurihydrogenibium sp. YO3AOP1]
Length = 145
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 66/138 (47%), Gaps = 8/138 (5%)
Query: 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 81
R LGLD+G K +G+++SDP A+PL +L + E LI + + ++G
Sbjct: 2 SRILGLDIGLKRIGVAVSDPFGVTATPLEFILNDEKVF----EKINDLIKNYKISKIVIG 57
Query: 82 YPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
P + + A K F+++L +D++ + +E FTS E L L
Sbjct: 58 LPLTLKGEEGEQARYTKEFVENLK-NHIPQDIEIIFVDERFTSSLAEKTL--LQTKKKNK 114
Query: 141 KTILDKFAAVGILQEYLD 158
K +D +AV ILQ YLD
Sbjct: 115 KEKIDSLSAVFILQTYLD 132
>gi|373859138|ref|ZP_09601870.1| Holliday junction resolvase YqgF [Bacillus sp. 1NLA3E]
gi|372451229|gb|EHP24708.1| Holliday junction resolvase YqgF [Bacillus sp. 1NLA3E]
Length = 138
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 8/140 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG+++SD A L+ L + + + +I E + +VG
Sbjct: 2 RVMGLDVGTKTVGVAVSDELGWTAQGLTTLKINEEEKEFGFAEIGEIIKEQQVSKIVVGL 61
Query: 83 PFNRQQNA---ADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
P N +A Q + +L +KL + W+E T+ E +L D+ +
Sbjct: 62 PKNMNNTIGPRGEACQA--YAGEL---EKLFSLPVVLWDERLTTMAAERVLLEADVSRKK 116
Query: 140 YKTILDKFAAVGILQEYLDN 159
K ++DK AA ILQ +LD+
Sbjct: 117 RKKVIDKMAATLILQGFLDS 136
>gi|113477781|ref|YP_723842.1| Holliday junction resolvase-like protein [Trichodesmium erythraeum
IMS101]
gi|110168829|gb|ABG53369.1| Holliday junction resolvase YqgF [Trichodesmium erythraeum IMS101]
Length = 149
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 6/145 (4%)
Query: 20 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFI 79
KR LGLDVG K +G++ D IA+ + + R D+ + ++ E ++ I
Sbjct: 4 KRISALGLDVGIKRMGVAGCDGTGLIATGIMTIKRASFEKDVF--QLQKIVQERQVQVLI 61
Query: 80 VGYPFNRQQNAA-DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
VG P++ + A +V+ + LS T L Y +E TS E +L ++ P
Sbjct: 62 VGLPYSMNGSIGFQAKKVQRYAQRLSQTLGLP---LEYVDERLTSVQAEEMLKAANISPS 118
Query: 139 EYKTILDKFAAVGILQEYLDNANRK 163
+ K ++D+ AA ILQ++LD K
Sbjct: 119 QNKALIDRKAAALILQQWLDERREK 143
>gi|379795972|ref|YP_005325970.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus MSHR1132]
gi|356872962|emb|CCE59301.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus MSHR1132]
Length = 142
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 13/143 (9%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
+ LGLDVG + VG++ISD A L L + +L + +I + N+ ++G
Sbjct: 5 KILGLDVGSRTVGIAISDLMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVGTVVIGL 64
Query: 83 PFNRQQNAADAVQVKLFIDDLSAT--KKLED----MKYAYWNEGFTSKGVELLLNPLDLH 136
P N + F + S T +KL++ ++ W+E ++ E L D+
Sbjct: 65 PKNMNNSIG-------FRGEASLTYKEKLQEACPSIEIVMWDERLSTMAAERSLLEADVS 117
Query: 137 PVEYKTILDKFAAVGILQEYLDN 159
+ K ++DK AAV ILQ YLD+
Sbjct: 118 RQKRKQVIDKMAAVFILQGYLDS 140
>gi|441517650|ref|ZP_20999384.1| putative Holliday junction resolvase [Gordonia hirsuta DSM 44140 =
NBRC 16056]
gi|441455524|dbj|GAC57345.1| putative Holliday junction resolvase [Gordonia hirsuta DSM 44140 =
NBRC 16056]
Length = 150
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 9/142 (6%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDL--MAEDFRSLISEFNLEGF 78
RGR L LDVG VG++ DP +A+P+ + R ++T D+ +AE L +E+ +
Sbjct: 5 RGRRLALDVGSVRVGVASCDPDGILATPVETVQRTRDTGDVRRVAE----LAAEYEVVEV 60
Query: 79 IVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHP 137
+VG P R A + F D ++ + Y++E T+ L +
Sbjct: 61 VVGLPRTLRNTEGAAVAAAREFGDAVAG--AIAPTPVVYYDERLTTVTAAGALRASGKNG 118
Query: 138 VEYKTILDKFAAVGILQEYLDN 159
+ ++D+ AAV ILQ +LD+
Sbjct: 119 KAARAVIDQAAAVAILQGWLDS 140
>gi|319949823|ref|ZP_08023842.1| Holliday junction resolvase-like protein [Dietzia cinnamea P4]
gi|319436514|gb|EFV91615.1| Holliday junction resolvase-like protein [Dietzia cinnamea P4]
Length = 151
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 5/142 (3%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFR--SLISEFNLEGF 78
RGR LGLDVG +G++ DP +A+P+ + AE R LI+E++ G
Sbjct: 7 RGRRLGLDVGTARIGVASCDPDGILATPVETIRVVDGDPGWAAELRRLGELIAEYDAVGV 66
Query: 79 IVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHP 137
+VG P + + + A + F D L T ++ +E T+ L+ +
Sbjct: 67 VVGLPTSLKGRETASTAMARSFADAL--TTASPEVPVELVDERLTTVTAGAALHGAGRNT 124
Query: 138 VEYKTILDKFAAVGILQEYLDN 159
+ + ++D+ AAV +LQ ++D+
Sbjct: 125 RKQRDVIDQAAAVVLLQAWIDS 146
>gi|418906560|ref|ZP_13460586.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIGC345D]
gi|377763465|gb|EHT87321.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIGC345D]
Length = 142
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 67/144 (46%), Gaps = 15/144 (10%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
+ LGLDVG + VG++ISD A L L + +L + +I + N+ ++G
Sbjct: 5 KILGLDVGSRTVGIAISDIMGWTAQGLDTLRINEENKELGIDQLVDIIKKHNVGTVVIGL 64
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAY-------WNEGFTSKGVELLLNPLDL 135
P N + F + S T K E + AY W+E ++ E L D+
Sbjct: 65 PKNMNNSIG-------FRGEASLTYK-EKLLEAYPSIEIVMWDERLSTMAAERSLLEADV 116
Query: 136 HPVEYKTILDKFAAVGILQEYLDN 159
+ K ++DK AAV ILQ YLD+
Sbjct: 117 SRQKRKQVIDKMAAVFILQGYLDS 140
>gi|225375409|ref|ZP_03752630.1| hypothetical protein ROSEINA2194_01034 [Roseburia inulinivorans DSM
16841]
gi|225212745|gb|EEG95099.1| hypothetical protein ROSEINA2194_01034 [Roseburia inulinivorans DSM
16841]
Length = 145
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 5/138 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKK-NTIDLMAEDFRSLISEFNLEGFIVG 81
R LGLD G K VG+++SD A L ++ R+ N + +I E+N+E ++G
Sbjct: 2 RILGLDYGSKTVGVAVSDELLFTAQGLEIVRRQSPNKLRQSLARIEEIIKEYNVERIVLG 61
Query: 82 YPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
YP N + + K F + L ++ + W+E T+ + + + +
Sbjct: 62 YPKNMNNTEGERCEKTKEFKEML---ERRTGLNVILWDERLTTVSADKHMMESGIRREDR 118
Query: 141 KTILDKFAAVGILQEYLD 158
K +D+ AAV ILQ YLD
Sbjct: 119 KKFVDEIAAVFILQGYLD 136
>gi|308070325|ref|YP_003871930.1| Holliday junction resolvase [Paenibacillus polymyxa E681]
gi|305859604|gb|ADM71392.1| Putative Holliday junction resolvase [Paenibacillus polymyxa E681]
Length = 138
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 68/136 (50%), Gaps = 4/136 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
+ +GLD GD+ +G+++SD A L V+ R+ + D +L+ + + +VG
Sbjct: 2 KVMGLDYGDRRIGVAVSDAFGWTAQGLEVIERRGD--DSEFGKIANLVRDNEVGEIVVGL 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N N + ++ I+ + K+L + W+E T++ E L D+ + K
Sbjct: 60 PKN--MNGTVGPRGEICIEFANRLKELLGLPVHLWDERLTTRSAERALLEADVSRKKRKQ 117
Query: 143 ILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 118 VVDKLAASLILQNYLD 133
>gi|114707193|ref|ZP_01440091.1| hypothetical protein FP2506_04781 [Fulvimarina pelagi HTCC2506]
gi|114537389|gb|EAU40515.1| hypothetical protein FP2506_04781 [Fulvimarina pelagi HTCC2506]
Length = 165
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 68/134 (50%), Gaps = 6/134 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+G K +G+++SD + A+P SVL RKK T D A+ ++++ + ++G P N
Sbjct: 21 GLDLGTKTIGVAVSDRSFRFANPRSVLKRKKFTQD--AQALKAMLDADEVSAIVLGLPLN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
++ Q K F + +A L++ W+E ++ E L +D+ + +
Sbjct: 79 MDGSSGPRAQATKAFSRNYAA---LDERPILLWDERLSTVAAERNLLDIDMSRKKRGERI 135
Query: 145 DKFAAVGILQEYLD 158
D AA ILQ LD
Sbjct: 136 DSAAAAIILQGVLD 149
>gi|199598089|ref|ZP_03211512.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus
HN001]
gi|258507765|ref|YP_003170516.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus
GG]
gi|385827467|ref|YP_005865239.1| holliday junction resolvase-like protein [Lactobacillus rhamnosus
GG]
gi|418072094|ref|ZP_12709367.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus
R0011]
gi|423079638|ref|ZP_17068308.1| RNAse H domain protein, YqgF family [Lactobacillus rhamnosus ATCC
21052]
gi|199591015|gb|EDY99098.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus
HN001]
gi|257147692|emb|CAR86665.1| Holliday junction resolvase [Lactobacillus rhamnosus GG]
gi|259649112|dbj|BAI41274.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus
GG]
gi|357538386|gb|EHJ22408.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus
R0011]
gi|357546166|gb|EHJ28111.1| RNAse H domain protein, YqgF family [Lactobacillus rhamnosus ATCC
21052]
Length = 144
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG + VG+++SDP A L ++ ++ + + L++++ + F++G
Sbjct: 2 RLMGLDVGSRTVGVAVSDPLGWTAQGLEIIRINEDKQQFGLKRLKELVTQYEVTAFVLGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTS-KGVELLLNPLDLHPVEYK 141
P N + + DL K+ + + +E T+ + +L+ D K
Sbjct: 62 PKNMNNSIGPRAEKSQAYGDL--LKETFGLPVDFIDERLTTVEASRMLIEEADASRKRQK 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 120 QVIDKLAAQMILQNYLD 136
>gi|121602720|ref|YP_989125.1| hypothetical protein BARBAKC583_0838 [Bartonella bacilliformis
KC583]
gi|421760934|ref|ZP_16197742.1| Holliday junction resolvase-like protein [Bartonella bacilliformis
INS]
gi|167012695|sp|A1UT22.1|RUVX_BARBK RecName: Full=Putative Holliday junction resolvase
gi|120614897|gb|ABM45498.1| conserved hypothetical protein TIGR00250 [Bartonella bacilliformis
KC583]
gi|411173820|gb|EKS43860.1| Holliday junction resolvase-like protein [Bartonella bacilliformis
INS]
Length = 161
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 78/162 (48%), Gaps = 17/162 (10%)
Query: 1 MKYVKPLRLFEQMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTID 60
M + R+ +L ++ GLD+G K +G++ISD ++P V+ RKK T+D
Sbjct: 1 MAIITIDRVISHLLSKQT-----IAGLDLGTKTIGIAISDISLTFSNPRPVIQRKKFTLD 55
Query: 61 LMAEDFRSLISEFNLEGF---IVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAY 116
+ LI F+ E I+G P N + VQ + F+ +++ K+ + +
Sbjct: 56 AL-----KLIKIFDHENVGVAIIGLPINMDGSNGPRVQATRTFVSNIAMYTKIP---FIF 107
Query: 117 WNEGFTSKGVELLLNPLDLHPVEYKTILDKFAAVGILQEYLD 158
W+E ++ + L +D+ ++ + +D AA ILQ LD
Sbjct: 108 WDERLSTIAAQRHLLEIDVSRIKRENRIDSAAAAFILQGALD 149
>gi|23500341|ref|NP_699781.1| Holliday junction resolvase-like protein [Brucella suis 1330]
gi|161620659|ref|YP_001594545.1| Holliday junction resolvase-like protein [Brucella canis ATCC
23365]
gi|163844749|ref|YP_001622404.1| Holliday junction resolvase-like protein [Brucella suis ATCC 23445]
gi|225629090|ref|ZP_03787123.1| conserved hypothetical protein [Brucella ceti str. Cudo]
gi|225686383|ref|YP_002734355.1| Holliday junction resolvase-like protein [Brucella melitensis ATCC
23457]
gi|256015374|ref|YP_003105383.1| Holliday junction resolvase-like protein [Brucella microti CCM
4915]
gi|256262476|ref|ZP_05465008.1| ribonuclease RNase H [Brucella melitensis bv. 2 str. 63/9]
gi|260568115|ref|ZP_05838584.1| ribonuclease RNase H fold containing protein [Brucella suis bv. 4
str. 40]
gi|261220434|ref|ZP_05934715.1| conserved hypothetical protein [Brucella ceti B1/94]
gi|261313336|ref|ZP_05952533.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
gi|261318725|ref|ZP_05957922.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
gi|261323159|ref|ZP_05962356.1| conserved hypothetical protein [Brucella neotomae 5K33]
gi|261750307|ref|ZP_05994016.1| holliday junction resolvase YqgF [Brucella suis bv. 5 str. 513]
gi|261753580|ref|ZP_05997289.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
gi|261756804|ref|ZP_06000513.1| ribonuclease RNase H fold containing protein [Brucella sp. F5/99]
gi|265986523|ref|ZP_06099080.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
gi|265992983|ref|ZP_06105540.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
Ether]
gi|265996215|ref|ZP_06108772.1| conserved hypothetical protein [Brucella ceti M490/95/1]
gi|306845931|ref|ZP_07478498.1| conserved hypothetical protein [Brucella inopinata BO1]
gi|340792382|ref|YP_004757846.1| putative Holliday junction resolvase [Brucella pinnipedialis B2/94]
gi|376276702|ref|YP_005152763.1| Holliday junction resolvase-like protein [Brucella canis HSK
A52141]
gi|376278563|ref|YP_005108596.1| hypothetical protein BSVBI22_B0591 [Brucella suis VBI22]
gi|384213107|ref|YP_005602190.1| Holliday junction resolvase-like protein [Brucella melitensis
M5-90]
gi|384223124|ref|YP_005614289.1| hypothetical protein BS1330_II0592 [Brucella suis 1330]
gi|384410208|ref|YP_005598828.1| Holliday junction resolvase-like protein [Brucella melitensis M28]
gi|384446733|ref|YP_005660951.1| Holliday junction resolvase-like protein [Brucella melitensis NI]
gi|32130035|sp|Q8FW65.1|RUVX_BRUSU RecName: Full=Putative Holliday junction resolvase
gi|189046087|sp|A9MBN7.1|RUVX_BRUC2 RecName: Full=Putative Holliday junction resolvase
gi|189046088|sp|A9WYR6.1|RUVX_BRUSI RecName: Full=Putative Holliday junction resolvase
gi|254767499|sp|C0RLB8.1|RUVX_BRUMB RecName: Full=Putative Holliday junction resolvase
gi|23463956|gb|AAN33786.1| conserved hypothetical protein TIGR00250 [Brucella suis 1330]
gi|161337470|gb|ABX63774.1| conserved hypothetical protein [Brucella canis ATCC 23365]
gi|163675472|gb|ABY39582.1| conserved hypothetical protein [Brucella suis ATCC 23445]
gi|225615586|gb|EEH12635.1| conserved hypothetical protein [Brucella ceti str. Cudo]
gi|225642488|gb|ACO02401.1| conserved hypothetical protein [Brucella melitensis ATCC 23457]
gi|255998034|gb|ACU49721.1| putative Holliday junction resolvase [Brucella microti CCM 4915]
gi|260154780|gb|EEW89861.1| ribonuclease RNase H fold containing protein [Brucella suis bv. 4
str. 40]
gi|260919018|gb|EEX85671.1| conserved hypothetical protein [Brucella ceti B1/94]
gi|261297948|gb|EEY01445.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
gi|261299139|gb|EEY02636.1| conserved hypothetical protein [Brucella neotomae 5K33]
gi|261302362|gb|EEY05859.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
gi|261736788|gb|EEY24784.1| ribonuclease RNase H fold containing protein [Brucella sp. F5/99]
gi|261740060|gb|EEY27986.1| holliday junction resolvase YqgF [Brucella suis bv. 5 str. 513]
gi|261743333|gb|EEY31259.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
gi|262550512|gb|EEZ06673.1| conserved hypothetical protein [Brucella ceti M490/95/1]
gi|262763853|gb|EEZ09885.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
Ether]
gi|263092212|gb|EEZ16509.1| ribonuclease RNase H [Brucella melitensis bv. 2 str. 63/9]
gi|264658720|gb|EEZ28981.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
gi|306273566|gb|EFM55411.1| conserved hypothetical protein [Brucella inopinata BO1]
gi|326410755|gb|ADZ67819.1| Holliday junction resolvase-like protein [Brucella melitensis M28]
gi|326554047|gb|ADZ88686.1| Holliday junction resolvase-like protein [Brucella melitensis
M5-90]
gi|340560841|gb|AEK56078.1| putative Holliday junction resolvase [Brucella pinnipedialis B2/94]
gi|343384572|gb|AEM20063.1| hypothetical protein BS1330_II0592 [Brucella suis 1330]
gi|349744730|gb|AEQ10272.1| Holliday junction resolvase-like protein [Brucella melitensis NI]
gi|358260001|gb|AEU07734.1| hypothetical protein BSVBI22_B0591 [Brucella suis VBI22]
gi|363405076|gb|AEW15370.1| Holliday junction resolvase-like protein [Brucella canis HSK
A52141]
Length = 162
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 6/134 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+G K +GL++SD A P V+ R K TID A+ + + ++G P N
Sbjct: 21 GLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFTID--AQVLLKALETDKVGVIVIGLPMN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
A VQ + F+ + + L D+ + +W+E ++ E L +D+ + +
Sbjct: 79 MDGTAGPRVQATRAFVRTM---QPLTDLPFVFWDERLSTVAAERALIGMDVSRGKRADRI 135
Query: 145 DKFAAVGILQEYLD 158
D AA ILQ LD
Sbjct: 136 DSAAAAFILQGALD 149
>gi|378825623|ref|YP_005188355.1| putative Holliday junction resolvase [Sinorhizobium fredii HH103]
gi|365178675|emb|CCE95530.1| putative Holliday junction resolvase [Sinorhizobium fredii HH103]
Length = 162
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 6/135 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+G K +GLS+SD + A+P VL R K ID A+ + ++ + F++G P N
Sbjct: 21 GLDLGTKTIGLSVSDLGRRFATPRDVLRRVKFGID--AQVLLNFAAKERIGAFVIGLPVN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
Q + F+ + +K E + + W+E ++ E +L +D+ + +
Sbjct: 79 MDGTEGPRCQATRAFVRSMG--EKTE-IPFVLWDERLSTVAAERVLIEMDVSRRKRAERI 135
Query: 145 DKFAAVGILQEYLDN 159
D AA ILQ LD
Sbjct: 136 DSAAASFILQGALDR 150
>gi|357038685|ref|ZP_09100482.1| Holliday junction resolvase [Desulfotomaculum gibsoniae DSM 7213]
gi|355359477|gb|EHG07239.1| Holliday junction resolvase [Desulfotomaculum gibsoniae DSM 7213]
Length = 138
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 68/137 (49%), Gaps = 5/137 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +G+D GD+ +G+++SD A + ++R+ ++ + +++ ++ +E +VG
Sbjct: 2 RIMGIDFGDRKIGIAVSDLLGWTAQGVDTIVRQAG-LEKDLDKIKAIAQKYEVEKIVVGL 60
Query: 83 PFNRQ-QNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N A +V F D + + + W+E ++ E LL D+ + +
Sbjct: 61 PRNMDGTTGAQGAKVLAFADQV---HRHLGLPVETWDERLSTVAAERLLISADVSRSKRR 117
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 118 KVIDKMAASIILQGYLD 134
>gi|149202250|ref|ZP_01879223.1| Holliday junction resolvase YqgF [Roseovarius sp. TM1035]
gi|149144348|gb|EDM32379.1| Holliday junction resolvase YqgF [Roseovarius sp. TM1035]
Length = 160
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 6/136 (4%)
Query: 24 FLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYP 83
+GLD+G K +G+++SD +ASP + R K T D A +++ + G I+G P
Sbjct: 19 IMGLDLGTKTIGVALSDRLWSVASPHETVKRVKFTDD--AARLLQIVAGREVGGIILGLP 76
Query: 84 FNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
N + Q + F +LS +L ++ YW+E ++ E L D
Sbjct: 77 RNMDGSEGPRAQSTRAFARNLS---RLTEVPIGYWDERLSTVAAERALLEADATRKRRMQ 133
Query: 143 ILDKFAAVGILQEYLD 158
++D AA ILQ LD
Sbjct: 134 VIDNIAAAYILQGVLD 149
>gi|409991606|ref|ZP_11274853.1| Holliday junction resolvase-like protein [Arthrospira platensis
str. Paraca]
gi|291569994|dbj|BAI92266.1| hypothetical protein [Arthrospira platensis NIES-39]
gi|409937537|gb|EKN78954.1| Holliday junction resolvase-like protein [Arthrospira platensis
str. Paraca]
Length = 148
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 71/140 (50%), Gaps = 6/140 (4%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
LGLD+G + +G++ D IA+ L+ ++R DL F+++I + ++ +VG P+
Sbjct: 13 LGLDIGRRRIGVAGCDGTGLIATGLTTIVRTHFEADLA--QFQAIIQQRQVQILVVGLPY 70
Query: 85 -NRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143
+ + A Q++ + L + L Y++E TS E +L + E K +
Sbjct: 71 LSNGELGTQARQIQKYTRRLQKSLAL---PVEYFDERLTSIEAEEMLKGQKIPLSENKAL 127
Query: 144 LDKFAAVGILQEYLDNANRK 163
+D+ AA ILQ++LD K
Sbjct: 128 IDRKAAALILQQWLDQRRHK 147
>gi|227894661|ref|ZP_04012466.1| crossover junction endodeoxyribonuclease [Lactobacillus ultunensis
DSM 16047]
gi|227863556|gb|EEJ70977.1| crossover junction endodeoxyribonuclease [Lactobacillus ultunensis
DSM 16047]
Length = 142
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 71/142 (50%), Gaps = 12/142 (8%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K VG+++SD A L + + + + L+ +++ +GF++G
Sbjct: 2 RLLGLDVGSKTVGVAVSDELGITAQKLETIHIDETKYNFGMRPLKKLVRQYDPDGFVLGL 61
Query: 83 PFNRQ-QNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTS-KGVELLLNPLDLHP 137
P N + A + K + K+LED + Y +E T+ + +L+ +H
Sbjct: 62 PKNMDGTSGASVARSKAY------GKRLEDKFGLPVHYSDERLTTIESRRVLVEDAGIHD 115
Query: 138 V-EYKTILDKFAAVGILQEYLD 158
+ K ++D+ AAV ILQ YLD
Sbjct: 116 RKKRKQVIDQMAAVLILQNYLD 137
>gi|73662454|ref|YP_301235.1| Holliday junction resolvase-like protein [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
gi|146291069|sp|Q49Y54.1|RUVX_STAS1 RecName: Full=Putative Holliday junction resolvase
gi|72494969|dbj|BAE18290.1| putative endonuclease involved in recombination [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
Length = 142
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 68/147 (46%), Gaps = 7/147 (4%)
Query: 13 MLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISE 72
MLK K+ +GLDVG K VG++ISD A L L + +L E +I
Sbjct: 1 MLKHKI------IGLDVGSKTVGIAISDLMGWTAQGLDTLRIDEENNELGIEALVKIIKR 54
Query: 73 FNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNP 132
N+ ++G P N + + L + + L ++ W+E ++ E L
Sbjct: 55 DNVGTVVIGLPKNMNNSIGFRGEASLQYKE-QLQEALPSLEIIMWDERLSTMAAERSLLE 113
Query: 133 LDLHPVEYKTILDKFAAVGILQEYLDN 159
D+ + K ++DK AAV ILQ YLD+
Sbjct: 114 ADVSRQKRKKVIDKMAAVFILQGYLDS 140
>gi|255282413|ref|ZP_05346968.1| putative holliday junction resolvase [Bryantella formatexigens DSM
14469]
gi|255266997|gb|EET60202.1| RNAse H domain protein, YqgF family [Marvinbryantia formatexigens
DSM 14469]
Length = 161
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 66/139 (47%), Gaps = 3/139 (2%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLR-KKNTIDLMAEDFRSLISEFNLEGFI 79
R R +GLD G K VG++ISD A + ++ R +N + +LI E+++ +
Sbjct: 6 RYRIMGLDFGSKTVGVAISDELLITAQGIEIIRRTSENKLRQTCARIETLIGEYHVGRIV 65
Query: 80 VGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
+G+P N + + L ++ ++ + W+E T+ + L + +
Sbjct: 66 LGFPKNMNNTIGERAEKSLAFKEM--LERRTSLPVVMWDERLTTVEADRTLMEGGVRREK 123
Query: 140 YKTILDKFAAVGILQEYLD 158
K +DK AAV ILQ YLD
Sbjct: 124 RKDYVDKLAAVYILQGYLD 142
>gi|453077442|ref|ZP_21980188.1| Holliday junction resolvase-like protein [Rhodococcus triatomae BKS
15-14]
gi|452759117|gb|EME17490.1| Holliday junction resolvase-like protein [Rhodococcus triatomae BKS
15-14]
Length = 193
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 7/156 (4%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLM-AEDFRSLISEFNLEGFI 79
RGR + +DVG +G++ SDP +A+P+ + R K+ D E +++ E+ I
Sbjct: 30 RGRRVAVDVGSVRIGVAASDPDGILATPVETVARAKSRADRSDIERLAAIVEEYEAVEVI 89
Query: 80 VGYPFNRQQNAADAVQVKL-FIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
VG P + +A + F L A ++ + +E FT+ L +
Sbjct: 90 VGLPQTLRGERGNAAGIATRFAASLRA--RIAPVPVRLTDERFTTVTASRALRDSGVKAK 147
Query: 139 EYKTILDKFAAVGILQEYLDNANRKVNLK-ANVLRP 173
++++D+ AAV ILQ +LD R L+ A RP
Sbjct: 148 GQRSVIDQAAAVAILQGWLD--QRSAALRSAQPARP 181
>gi|386839013|ref|YP_006244071.1| hypothetical protein SHJG_2924 [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374099314|gb|AEY88198.1| hypothetical protein SHJG_2924 [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451792305|gb|AGF62354.1| hypothetical protein SHJGH_2688 [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 154
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 69/141 (48%), Gaps = 5/141 (3%)
Query: 20 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFI 79
+RGR L +DVGD +G++ DP +A+P+ + + R L+ E+ +
Sbjct: 2 RRGRRLAIDVGDARIGVASCDPDGILATPVETV--PGRDVPAAHRRLRQLVEEYEPIEVV 59
Query: 80 VGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 138
+G P + + AV+V+ F +L+ K +E + +E T+ L +
Sbjct: 60 IGLPRSLKGGEGPAAVKVRAFAQELA--KGIEPVPVRLVDERMTTVTASQGLRASGVKSK 117
Query: 139 EYKTILDKFAAVGILQEYLDN 159
+ + ++D+ AAV ILQ+ L++
Sbjct: 118 KGRAVIDQAAAVIILQQALES 138
>gi|258538956|ref|YP_003173455.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus
Lc 705]
gi|417065132|ref|ZP_11949792.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus
MTCC 5462]
gi|421770330|ref|ZP_16207028.1| Putative Holliday junction resolvase [Lactobacillus rhamnosus
LRHMDP2]
gi|421773386|ref|ZP_16210032.1| Putative Holliday junction resolvase [Lactobacillus rhamnosus
LRHMDP3]
gi|257150632|emb|CAR89604.1| Holliday junction resolvase [Lactobacillus rhamnosus Lc 705]
gi|328469825|gb|EGF40739.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus
MTCC 5462]
gi|411182112|gb|EKS49267.1| Putative Holliday junction resolvase [Lactobacillus rhamnosus
LRHMDP3]
gi|411182356|gb|EKS49506.1| Putative Holliday junction resolvase [Lactobacillus rhamnosus
LRHMDP2]
Length = 144
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG + VG+++SDP A L ++ ++ + + L++++ + F++G
Sbjct: 2 RLMGLDVGSRTVGVAVSDPLGWTAQGLEIIRINEDKQQFGLKRLKELVTQYEVTAFVLGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTS-KGVELLLNPLDLHPVEYK 141
P N + + DL K+ + + +E T+ + +L+ D K
Sbjct: 62 PKNMNNSIGPRAEKSQAYGDL--LKETFGLPVDFIDERLTTVEASRMLIEEADASRKRQK 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 120 QVIDKLAAQMILQNYLD 136
>gi|384536698|ref|YP_005720783.1| Holliday junction resolvase YqgF [Sinorhizobium meliloti SM11]
gi|336033589|gb|AEH79521.1| Holliday junction resolvase YqgF [Sinorhizobium meliloti SM11]
Length = 218
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 6/135 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+G K +G+S+SD + A+P V+ R K D A+ S + + FI+G P N
Sbjct: 74 GLDLGTKTIGISVSDLGRRFATPREVIRRVKFGAD--AQALLSFAEKEKIAAFIIGLPVN 131
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
+ Q + F+ + + D+ + W+E ++ E +L +D+ + +
Sbjct: 132 MDGSEGPRCQATRAFVRTMG---EKTDIPFVLWDERLSTVAAERVLIEMDVSRKKRAERI 188
Query: 145 DKFAAVGILQEYLDN 159
D AA ILQ LD
Sbjct: 189 DSAAASFILQGALDR 203
>gi|374325348|ref|YP_005078477.1| Holliday junction resolvase [Paenibacillus terrae HPL-003]
gi|357204357|gb|AET62254.1| Holliday junction resolvase [Paenibacillus terrae HPL-003]
Length = 138
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 68/136 (50%), Gaps = 4/136 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
+ +GLD GD+ +G+++SD A L V+ R+ + D +L+ + + +VG
Sbjct: 2 KVMGLDYGDRRIGVAVSDAFGWTAQGLEVIERRGD--DSEFGKIANLVRDNEVGEVVVGL 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N N + ++ I+ + K+L + W+E T++ E L D+ + K
Sbjct: 60 PKN--MNGTVGPRGEICIEFANRLKELLGLPVHLWDERLTTRSAERTLLEADVSRKKRKQ 117
Query: 143 ILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 118 VVDKLAASLILQNYLD 133
>gi|395240986|ref|ZP_10418008.1| Putative Holliday junction resolvase [Lactobacillus gigeriorum
CRBIP 24.85]
gi|394475494|emb|CCI87985.1| Putative Holliday junction resolvase [Lactobacillus gigeriorum
CRBIP 24.85]
Length = 142
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 72/144 (50%), Gaps = 7/144 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K +G++ISD A L + + + + ++ E+N E F++G
Sbjct: 2 RLIGLDVGSKTIGVAISDELGISAQKLETIAIDETRHNFGMRSLKKIVREYNPEAFVLGL 61
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTS-KGVELLLNPLDLHPV-E 139
P N ++ AV+ K + L A L Y +E T+ + +L+ +H +
Sbjct: 62 PKNMDGSSGVAVERSKAMGERLKAKFGL---PIYYCDERLTTIESKRVLVEEAGVHDRKK 118
Query: 140 YKTILDKFAAVGILQEYLDNANRK 163
K ++D+ AAV ILQ YLD NRK
Sbjct: 119 RKEVIDQMAAVLILQTYLD-LNRK 141
>gi|451940651|ref|YP_007461289.1| putative holliday junction resolvase [Bartonella australis
Aust/NH1]
gi|451900038|gb|AGF74501.1| putative holliday junction resolvase [Bartonella australis
Aust/NH1]
Length = 159
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 67/134 (50%), Gaps = 6/134 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+G K +G++ISD ++P V+ RKK T+D A + + N+ ++G P N
Sbjct: 21 GLDLGTKTIGIAISDISLMFSNPRPVIQRKKFTLD--AHALVKIFNNENVGAAVIGLPIN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
+ VQ K F+ +++ ++ + +W+E ++ + L +D+ + +
Sbjct: 79 MDGSNGPRVQATKTFVKNMTIYTRIP---FVFWDERLSTIAAQRCLLEMDVSRSKRPNRI 135
Query: 145 DKFAAVGILQEYLD 158
D AA ILQ LD
Sbjct: 136 DSAAAAFILQGALD 149
>gi|440683201|ref|YP_007157996.1| Holliday junction resolvase [Anabaena cylindrica PCC 7122]
gi|428680320|gb|AFZ59086.1| Holliday junction resolvase [Anabaena cylindrica PCC 7122]
Length = 157
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 69/135 (51%), Gaps = 6/135 (4%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
LGLDVG K +GL+ D IA+ + + R+ D+ E + +++E ++ +VG P+
Sbjct: 13 LGLDVGSKRIGLAGCDGTGLIATGIMTIERRSFKEDV--EQIQQIVNERQVQLLVVGLPY 70
Query: 85 NRQQNAA-DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143
+ + A V+ F LS + +L Y +E TS E L+ + P K +
Sbjct: 71 SMDGSLGFQARHVQKFAKRLSESLQL---PMEYMDERLTSYQAEQLIIAENRSPSRNKGL 127
Query: 144 LDKFAAVGILQEYLD 158
+D+ AA ILQ++LD
Sbjct: 128 IDRKAAALILQQWLD 142
>gi|414160973|ref|ZP_11417236.1| RNAse H-fold protein YqgF [Staphylococcus simulans ACS-120-V-Sch1]
gi|410876652|gb|EKS24550.1| RNAse H-fold protein YqgF [Staphylococcus simulans ACS-120-V-Sch1]
Length = 141
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 1/137 (0%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
+ +GLDVG K VG+++SD A L L + +L + ++I + + + ++G
Sbjct: 5 KIIGLDVGSKTVGVAVSDLMGWTAQGLDTLRINEEENELGIDRLAAIIKQEDADTVVIGL 64
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P N + + L + + + L D+K W+E ++ E L D+ +
Sbjct: 65 PKNMNNSIGFRGEASLKYKE-ALLEALPDLKVVMWDERLSTMAAERSLLEADVSRKKRSK 123
Query: 143 ILDKFAAVGILQEYLDN 159
++DK AAV ILQ YLD+
Sbjct: 124 VIDKMAAVFILQGYLDS 140
>gi|260494134|ref|ZP_05814265.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
3_1_33]
gi|336401150|ref|ZP_08581922.1| Holliday junction resolvase [Fusobacterium sp. 21_1A]
gi|423136917|ref|ZP_17124560.1| putative Holliday junction resolvase [Fusobacterium nucleatum
subsp. animalis F0419]
gi|260198280|gb|EEW95796.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
3_1_33]
gi|336161507|gb|EGN64508.1| Holliday junction resolvase [Fusobacterium sp. 21_1A]
gi|371960984|gb|EHO78627.1| putative Holliday junction resolvase [Fusobacterium nucleatum
subsp. animalis F0419]
Length = 147
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 77/139 (55%), Gaps = 9/139 (6%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKK-NTIDLMAEDFRSLISEFNLEGFIVG 81
R++ LD+GD +G++ SD IASPL + RKK ++ +AE + E + +VG
Sbjct: 3 RYIALDIGDVRIGVAKSDIMGIIASPLETINRKKVKSVKRIAE----ICKENDTNLIVVG 58
Query: 82 YPFNRQ-QNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH-PVE 139
P + + A +V+ +I L K++E+++ +E F++ + +L L+ + +E
Sbjct: 59 IPKSLDGEEKRQAEKVREYIKKLK--KEIENLEIIEVDERFSTVIADNILKELNKNGAIE 116
Query: 140 YKTILDKFAAVGILQEYLD 158
+ ++DK AA ILQ YLD
Sbjct: 117 KRKVVDKVAASIILQTYLD 135
>gi|443648072|ref|ZP_21129902.1| putative family protein [Microcystis aeruginosa DIANCHI905]
gi|159029092|emb|CAO90081.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443335338|gb|ELS49813.1| putative family protein [Microcystis aeruginosa DIANCHI905]
Length = 162
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 68/142 (47%), Gaps = 7/142 (4%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
LGLD+G K VG++ D IA+ L+ ++R DL F +++ E N++ + G P+
Sbjct: 7 LGLDIGKKRVGVAGCDGTGLIATGLTTIIRSSFVADLA--QFEAIVKERNIKILVAGLPY 64
Query: 85 NRQQNAA-DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143
A QV+ + L+ T D+ Y +E TS E L K
Sbjct: 65 TMAGELGFQAKQVQKYAQKLAITL---DLPLEYIDERCTSLEAEEFLKAKKQFSSWDKGA 121
Query: 144 LDKFAAVGILQEYLDNANRKVN 165
+D+ AA ILQ++LD R+VN
Sbjct: 122 IDREAAAIILQQWLDR-RRRVN 142
>gi|339448749|ref|ZP_08652305.1| Holliday junction resolvase-like protein [Lactobacillus
fructivorans KCTC 3543]
Length = 144
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 71/145 (48%), Gaps = 3/145 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG+++SD + + ++ ++ + + LI ++++ G ++G
Sbjct: 2 RLMGLDVGSKTVGVAMSDALGWTSQGIEIVKINEDEKEFGLDRIGELIKKYDVNGVVIGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + V+ +L KK ++ + +E T+ E +L+ D+ + K
Sbjct: 62 PKNMNNTSGPRVEASKNYGEL--IKKHFNLPVDFEDERLTTVEAERMLIEQADVSRAKRK 119
Query: 142 TILDKFAAVGILQEYLDNANRKVNL 166
++DK AA ILQ YLD + N
Sbjct: 120 KVIDKVAAELILQSYLDRKGKLCNF 144
>gi|21283295|ref|NP_646383.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus MW2]
gi|49483861|ref|YP_041085.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus MRSA252]
gi|49486449|ref|YP_043670.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus MSSA476]
gi|57650498|ref|YP_186511.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus COL]
gi|87160105|ref|YP_494268.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus USA300_FPR3757]
gi|88195425|ref|YP_500229.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus NCTC 8325]
gi|148268097|ref|YP_001247040.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus JH9]
gi|150394165|ref|YP_001316840.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus JH1]
gi|151221729|ref|YP_001332551.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus str. Newman]
gi|161509843|ref|YP_001575502.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus USA300_TCH1516]
gi|221141114|ref|ZP_03565607.1| hypothetical protein SauraJ_05678 [Staphylococcus aureus subsp.
aureus str. JKD6009]
gi|253316599|ref|ZP_04839812.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus str. CF-Marseille]
gi|253732271|ref|ZP_04866436.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus USA300_TCH959]
gi|253733133|ref|ZP_04867298.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus TCH130]
gi|255006401|ref|ZP_05145002.2| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus Mu50-omega]
gi|257425741|ref|ZP_05602165.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257428401|ref|ZP_05604799.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257431039|ref|ZP_05607418.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus
68-397]
gi|257433725|ref|ZP_05610083.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
E1410]
gi|257436640|ref|ZP_05612684.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
M876]
gi|257793691|ref|ZP_05642670.1| conserved hypothetical protein [Staphylococcus aureus A9781]
gi|258411010|ref|ZP_05681290.1| Holliday junction resolvase [Staphylococcus aureus A9763]
gi|258420188|ref|ZP_05683143.1| Holliday junction resolvase [Staphylococcus aureus A9719]
gi|258424042|ref|ZP_05686924.1| conserved hypothetical protein [Staphylococcus aureus A9635]
gi|258438190|ref|ZP_05689474.1| Holliday junction resolvase YqgF [Staphylococcus aureus A9299]
gi|258443653|ref|ZP_05691992.1| Holliday junction resolvase YqgF [Staphylococcus aureus A8115]
gi|258446860|ref|ZP_05695014.1| conserved hypothetical protein [Staphylococcus aureus A6300]
gi|258448774|ref|ZP_05696886.1| Holliday junction resolvase YqgF [Staphylococcus aureus A6224]
gi|258450557|ref|ZP_05698619.1| conserved hypothetical protein [Staphylococcus aureus A5948]
gi|258453593|ref|ZP_05701571.1| Holliday junction resolvase YqgF [Staphylococcus aureus A5937]
gi|269203242|ref|YP_003282511.1| hypothetical protein SAAV_1608 [Staphylococcus aureus subsp. aureus
ED98]
gi|282893119|ref|ZP_06301353.1| conserved hypothetical protein [Staphylococcus aureus A8117]
gi|282904197|ref|ZP_06312085.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus C160]
gi|282906023|ref|ZP_06313878.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282908935|ref|ZP_06316753.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282911253|ref|ZP_06319055.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282914421|ref|ZP_06322207.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus M899]
gi|282916885|ref|ZP_06324643.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
D139]
gi|282919391|ref|ZP_06327126.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
C427]
gi|282920163|ref|ZP_06327888.1| conserved hypothetical protein [Staphylococcus aureus A9765]
gi|282924716|ref|ZP_06332384.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
C101]
gi|282928250|ref|ZP_06335855.1| conserved hypothetical protein [Staphylococcus aureus A10102]
gi|283958377|ref|ZP_06375828.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus A017934/97]
gi|284024673|ref|ZP_06379071.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus 132]
gi|293503496|ref|ZP_06667343.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
58-424]
gi|293510513|ref|ZP_06669219.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
M809]
gi|293531053|ref|ZP_06671735.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus M1015]
gi|294848645|ref|ZP_06789391.1| hypothetical protein SKAG_00712 [Staphylococcus aureus A9754]
gi|295406738|ref|ZP_06816543.1| hypothetical protein SMAG_01910 [Staphylococcus aureus A8819]
gi|295428193|ref|ZP_06820825.1| hypothetical protein SIAG_00722 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|296276723|ref|ZP_06859230.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus MR1]
gi|297207664|ref|ZP_06924099.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|297245680|ref|ZP_06929545.1| hypothetical protein SLAG_01773 [Staphylococcus aureus A8796]
gi|297590840|ref|ZP_06949478.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus MN8]
gi|300911746|ref|ZP_07129189.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus TCH70]
gi|304380787|ref|ZP_07363454.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|379014823|ref|YP_005291059.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus VC40]
gi|384547847|ref|YP_005737100.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus
ED133]
gi|384550441|ref|YP_005739693.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus
JKD6159]
gi|384862216|ref|YP_005744936.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus
str. JKD6008]
gi|384864836|ref|YP_005750195.1| hypothetical protein ECTR2_1465 [Staphylococcus aureus subsp.
aureus ECT-R 2]
gi|384867411|ref|YP_005747607.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus TCH60]
gi|384870156|ref|YP_005752870.1| Putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus T0131]
gi|385781900|ref|YP_005758071.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus 11819-97]
gi|386729316|ref|YP_006195699.1| endonuclease [Staphylococcus aureus subsp. aureus 71193]
gi|386831224|ref|YP_006237878.1| hypothetical protein SAEMRSA15_15340 [Staphylococcus aureus subsp.
aureus HO 5096 0412]
gi|387143219|ref|YP_005731612.1| hypothetical protein SATW20_16110 [Staphylococcus aureus subsp.
aureus TW20]
gi|387602955|ref|YP_005734476.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
ST398]
gi|387780705|ref|YP_005755503.1| hypothetical protein SARLGA251_15190 [Staphylococcus aureus subsp.
aureus LGA251]
gi|404478966|ref|YP_006710396.1| hypothetical protein C248_1658 [Staphylococcus aureus 08BA02176]
gi|415682416|ref|ZP_11447732.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus CGS00]
gi|415686194|ref|ZP_11450331.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus CGS01]
gi|415692737|ref|ZP_11454657.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus CGS03]
gi|416841963|ref|ZP_11904718.1| Holliday junction resolvase-like protein [Staphylococcus aureus
O11]
gi|416846566|ref|ZP_11906615.1| Holliday junction resolvase-like protein [Staphylococcus aureus
O46]
gi|417649220|ref|ZP_12299024.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21189]
gi|417651384|ref|ZP_12301147.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21172]
gi|417653390|ref|ZP_12303121.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21193]
gi|417797302|ref|ZP_12444498.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21305]
gi|417799900|ref|ZP_12447032.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21310]
gi|417803337|ref|ZP_12450379.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21318]
gi|417887961|ref|ZP_12532080.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21195]
gi|417890238|ref|ZP_12534317.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21200]
gi|417894317|ref|ZP_12538336.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21201]
gi|417898031|ref|ZP_12541957.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21259]
gi|417901249|ref|ZP_12545126.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21266]
gi|417905352|ref|ZP_12549163.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21269]
gi|418277956|ref|ZP_12892176.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21178]
gi|418282060|ref|ZP_12894849.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21202]
gi|418285627|ref|ZP_12898295.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21209]
gi|418306754|ref|ZP_12918522.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21194]
gi|418310009|ref|ZP_12921559.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21331]
gi|418313216|ref|ZP_12924710.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21334]
gi|418316674|ref|ZP_12928109.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21340]
gi|418318496|ref|ZP_12929898.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21232]
gi|418321357|ref|ZP_12932703.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus VCU006]
gi|418424803|ref|ZP_12997916.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus VRS1]
gi|418427758|ref|ZP_13000763.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus VRS2]
gi|418430601|ref|ZP_13003511.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus VRS3a]
gi|418433895|ref|ZP_13006336.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus VRS4]
gi|418437239|ref|ZP_13009035.1| hypothetical protein MQI_01323 [Staphylococcus aureus subsp. aureus
VRS5]
gi|418440139|ref|ZP_13011839.1| hypothetical protein MQK_01936 [Staphylococcus aureus subsp. aureus
VRS6]
gi|418443157|ref|ZP_13014756.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus VRS7]
gi|418446221|ref|ZP_13017694.1| hypothetical protein MQO_02006 [Staphylococcus aureus subsp. aureus
VRS8]
gi|418449235|ref|ZP_13020619.1| hypothetical protein MQQ_02016 [Staphylococcus aureus subsp. aureus
VRS9]
gi|418452045|ref|ZP_13023379.1| hypothetical protein MQS_00523 [Staphylococcus aureus subsp. aureus
VRS10]
gi|418455040|ref|ZP_13026299.1| hypothetical protein MQU_01155 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|418457918|ref|ZP_13029117.1| hypothetical protein MQW_01435 [Staphylococcus aureus subsp. aureus
VRS11b]
gi|418558872|ref|ZP_13123419.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21252]
gi|418562354|ref|ZP_13126811.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21262]
gi|418564738|ref|ZP_13129159.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21264]
gi|418571874|ref|ZP_13136094.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21283]
gi|418574403|ref|ZP_13138572.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21333]
gi|418579539|ref|ZP_13143634.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIG1114]
gi|418582543|ref|ZP_13146621.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIG1605]
gi|418597389|ref|ZP_13160917.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21342]
gi|418598005|ref|ZP_13161519.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21343]
gi|418601557|ref|ZP_13164983.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21345]
gi|418640359|ref|ZP_13202591.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus IS-3]
gi|418641752|ref|ZP_13203957.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus IS-24]
gi|418645186|ref|ZP_13207314.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus IS-55]
gi|418648387|ref|ZP_13210431.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus IS-88]
gi|418650572|ref|ZP_13212590.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus IS-91]
gi|418652849|ref|ZP_13214812.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus IS-99]
gi|418656161|ref|ZP_13217980.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus IS-105]
gi|418659193|ref|ZP_13220881.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus IS-111]
gi|418660799|ref|ZP_13222411.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus IS-122]
gi|418872824|ref|ZP_13427150.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus IS-125]
gi|418875554|ref|ZP_13429810.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIGC93]
gi|418878533|ref|ZP_13432768.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIG1165]
gi|418881299|ref|ZP_13435516.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIG1213]
gi|418884148|ref|ZP_13438341.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIG1769]
gi|418889430|ref|ZP_13443563.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIG1524]
gi|418892346|ref|ZP_13446459.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIG1176]
gi|418895379|ref|ZP_13449474.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIG1057]
gi|418898251|ref|ZP_13452321.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIGC341D]
gi|418901121|ref|ZP_13455177.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIG1214]
gi|418903921|ref|ZP_13457962.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIG1770]
gi|418909467|ref|ZP_13463463.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIG149]
gi|418912225|ref|ZP_13466206.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIG547]
gi|418914718|ref|ZP_13468688.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIGC340D]
gi|418917514|ref|ZP_13471473.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIG1267]
gi|418919581|ref|ZP_13473526.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIGC348]
gi|418923298|ref|ZP_13477214.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIG1233]
gi|418925874|ref|ZP_13479776.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIG2018]
gi|418928964|ref|ZP_13482850.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIG1612]
gi|418931921|ref|ZP_13485756.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIG1750]
gi|418934585|ref|ZP_13488407.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIGC128]
gi|418946988|ref|ZP_13499386.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus IS-157]
gi|418953535|ref|ZP_13505524.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus IS-189]
gi|418978339|ref|ZP_13526140.1| Endonuclease involved in recombination [Staphylococcus aureus
subsp. aureus DR10]
gi|418982622|ref|ZP_13530330.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIG1242]
gi|418986290|ref|ZP_13533974.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIG1500]
gi|418988681|ref|ZP_13536353.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIG1835]
gi|418991545|ref|ZP_13539206.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIG1096]
gi|418994341|ref|ZP_13541976.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIG290]
gi|419773165|ref|ZP_14299176.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus CO-23]
gi|419784629|ref|ZP_14310392.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus IS-M]
gi|421148505|ref|ZP_15608165.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus str. Newbould 305]
gi|422742600|ref|ZP_16796603.1| conserved hypothetical protein TIGR00250 [Staphylococcus aureus
subsp. aureus MRSA177]
gi|422746089|ref|ZP_16800022.1| conserved hypothetical protein TIGR00250 [Staphylococcus aureus
subsp. aureus MRSA131]
gi|424774998|ref|ZP_18201997.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus CM05]
gi|424785450|ref|ZP_18212253.1| Putative Holliday junction resolvase [Staphylococcus aureus CN79]
gi|440707328|ref|ZP_20888027.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21282]
gi|440735066|ref|ZP_20914677.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus DSM 20231]
gi|443635937|ref|ZP_21120055.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21236]
gi|448740343|ref|ZP_21722322.1| Holliday junction resolvase-like protein [Staphylococcus aureus
KT/314250]
gi|448743299|ref|ZP_21725209.1| Holliday junction resolvase-like protein [Staphylococcus aureus
KT/Y21]
gi|54039586|sp|P67490.1|RUVX_STAAN RecName: Full=Putative Holliday junction resolvase
gi|54039587|sp|P67491.1|RUVX_STAAW RecName: Full=Putative Holliday junction resolvase
gi|54042291|sp|P67489.1|RUVX_STAAM RecName: Full=Putative Holliday junction resolvase
gi|62900903|sp|Q5HFE6.1|RUVX_STAAC RecName: Full=Putative Holliday junction resolvase
gi|62900976|sp|Q6G8V3.1|RUVX_STAAS RecName: Full=Putative Holliday junction resolvase
gi|62900977|sp|Q6GG87.1|RUVX_STAAR RecName: Full=Putative Holliday junction resolvase
gi|146325609|sp|Q2FGB0.1|RUVX_STAA3 RecName: Full=Putative Holliday junction resolvase
gi|146325610|sp|Q2FXW1.1|RUVX_STAA8 RecName: Full=Putative Holliday junction resolvase
gi|172048919|sp|A6QHF7.1|RUVX_STAAE RecName: Full=Putative Holliday junction resolvase
gi|189046106|sp|A6U285.1|RUVX_STAA2 RecName: Full=Putative Holliday junction resolvase
gi|189046107|sp|A5ITE1.1|RUVX_STAA9 RecName: Full=Putative Holliday junction resolvase
gi|189046108|sp|A8Z4F4.1|RUVX_STAAT RecName: Full=Putative Holliday junction resolvase
gi|21204735|dbj|BAB95431.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MW2]
gi|49241990|emb|CAG40687.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|49244892|emb|CAG43353.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57284684|gb|AAW36778.1| conserved hypothetical protein TIGR00250 [Staphylococcus aureus
subsp. aureus COL]
gi|87126079|gb|ABD20593.1| conserved hypothetical protein TIGR00250 [Staphylococcus aureus
subsp. aureus USA300_FPR3757]
gi|87202983|gb|ABD30793.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|147741166|gb|ABQ49464.1| Holliday junction resolvase YqgF [Staphylococcus aureus subsp.
aureus JH9]
gi|149946617|gb|ABR52553.1| Holliday junction resolvase YqgF [Staphylococcus aureus subsp.
aureus JH1]
gi|150374529|dbj|BAF67789.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
str. Newman]
gi|160368652|gb|ABX29623.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus USA300_TCH1516]
gi|253724060|gb|EES92789.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus USA300_TCH959]
gi|253728889|gb|EES97618.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus TCH130]
gi|257271435|gb|EEV03581.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257275242|gb|EEV06729.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257278242|gb|EEV08884.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus
68-397]
gi|257281818|gb|EEV11955.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
E1410]
gi|257283991|gb|EEV14114.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
M876]
gi|257787663|gb|EEV26003.1| conserved hypothetical protein [Staphylococcus aureus A9781]
gi|257840160|gb|EEV64624.1| Holliday junction resolvase [Staphylococcus aureus A9763]
gi|257843899|gb|EEV68293.1| Holliday junction resolvase [Staphylococcus aureus A9719]
gi|257845663|gb|EEV69695.1| conserved hypothetical protein [Staphylococcus aureus A9635]
gi|257848234|gb|EEV72225.1| Holliday junction resolvase YqgF [Staphylococcus aureus A9299]
gi|257851059|gb|EEV75002.1| Holliday junction resolvase YqgF [Staphylococcus aureus A8115]
gi|257854435|gb|EEV77384.1| conserved hypothetical protein [Staphylococcus aureus A6300]
gi|257858052|gb|EEV80941.1| Holliday junction resolvase YqgF [Staphylococcus aureus A6224]
gi|257861715|gb|EEV84514.1| conserved hypothetical protein [Staphylococcus aureus A5948]
gi|257864324|gb|EEV87074.1| Holliday junction resolvase YqgF [Staphylococcus aureus A5937]
gi|262075532|gb|ACY11505.1| hypothetical protein SAAV_1608 [Staphylococcus aureus subsp. aureus
ED98]
gi|269941102|emb|CBI49488.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
TW20]
gi|282313551|gb|EFB43946.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
C101]
gi|282317201|gb|EFB47575.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
C427]
gi|282319372|gb|EFB49724.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
D139]
gi|282321602|gb|EFB51927.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus M899]
gi|282324948|gb|EFB55258.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282327199|gb|EFB57494.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282331315|gb|EFB60829.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282590057|gb|EFB95139.1| conserved hypothetical protein [Staphylococcus aureus A10102]
gi|282594511|gb|EFB99496.1| conserved hypothetical protein [Staphylococcus aureus A9765]
gi|282595815|gb|EFC00779.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus C160]
gi|282764437|gb|EFC04563.1| conserved hypothetical protein [Staphylococcus aureus A8117]
gi|283470893|emb|CAQ50104.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
ST398]
gi|283790526|gb|EFC29343.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus A017934/97]
gi|290920321|gb|EFD97387.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus M1015]
gi|291095162|gb|EFE25427.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
58-424]
gi|291466877|gb|EFF09397.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
M809]
gi|294824671|gb|EFG41094.1| hypothetical protein SKAG_00712 [Staphylococcus aureus A9754]
gi|294968485|gb|EFG44509.1| hypothetical protein SMAG_01910 [Staphylococcus aureus A8819]
gi|295128551|gb|EFG58185.1| hypothetical protein SIAG_00722 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|296887681|gb|EFH26579.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|297177331|gb|EFH36583.1| hypothetical protein SLAG_01773 [Staphylococcus aureus A8796]
gi|297575726|gb|EFH94442.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus MN8]
gi|298694896|gb|ADI98118.1| probable Holliday junction resolvase [Staphylococcus aureus subsp.
aureus ED133]
gi|300885992|gb|EFK81194.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus TCH70]
gi|302333290|gb|ADL23483.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus
JKD6159]
gi|302751445|gb|ADL65622.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus
str. JKD6008]
gi|304340663|gb|EFM06596.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|312437916|gb|ADQ76987.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus TCH60]
gi|312830003|emb|CBX34845.1| uncharacterised protein family (UPF0081) family protein
[Staphylococcus aureus subsp. aureus ECT-R 2]
gi|315129897|gb|EFT85887.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus CGS03]
gi|315195516|gb|EFU25903.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus CGS00]
gi|315198687|gb|EFU29015.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus CGS01]
gi|320140497|gb|EFW32351.1| conserved hypothetical protein TIGR00250 [Staphylococcus aureus
subsp. aureus MRSA131]
gi|320144036|gb|EFW35805.1| conserved hypothetical protein TIGR00250 [Staphylococcus aureus
subsp. aureus MRSA177]
gi|323439037|gb|EGA96769.1| Holliday junction resolvase-like protein [Staphylococcus aureus
O11]
gi|323442820|gb|EGB00445.1| Holliday junction resolvase-like protein [Staphylococcus aureus
O46]
gi|329314291|gb|AEB88704.1| Putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus T0131]
gi|329727568|gb|EGG64024.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21172]
gi|329728326|gb|EGG64763.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21189]
gi|329733081|gb|EGG69418.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21193]
gi|334266794|gb|EGL85264.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21305]
gi|334272432|gb|EGL90797.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21310]
gi|334272551|gb|EGL90915.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21318]
gi|341843628|gb|EGS84850.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21269]
gi|341846408|gb|EGS87605.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21266]
gi|341849533|gb|EGS90676.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21259]
gi|341852462|gb|EGS93351.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21201]
gi|341855931|gb|EGS96775.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21200]
gi|341856990|gb|EGS97817.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21195]
gi|344177807|emb|CCC88286.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
LGA251]
gi|364522889|gb|AEW65639.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus 11819-97]
gi|365169437|gb|EHM60685.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21209]
gi|365171610|gb|EHM62435.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21202]
gi|365172915|gb|EHM63577.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21178]
gi|365225589|gb|EHM66832.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus VCU006]
gi|365236487|gb|EHM77376.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21334]
gi|365237466|gb|EHM78312.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21331]
gi|365240637|gb|EHM81404.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21340]
gi|365242959|gb|EHM83654.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21232]
gi|365246325|gb|EHM86886.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21194]
gi|371973458|gb|EHO90806.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21262]
gi|371975875|gb|EHO93167.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21264]
gi|371976222|gb|EHO93512.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21252]
gi|371978366|gb|EHO95615.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21283]
gi|371979130|gb|EHO96365.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21333]
gi|374363520|gb|AEZ37625.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus VC40]
gi|374394516|gb|EHQ65798.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21342]
gi|374398271|gb|EHQ69455.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21345]
gi|374400313|gb|EHQ71431.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21343]
gi|375014923|gb|EHS08594.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus IS-3]
gi|375018207|gb|EHS11787.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus IS-24]
gi|375021017|gb|EHS14524.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus IS-99]
gi|375024019|gb|EHS17464.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus IS-55]
gi|375026300|gb|EHS19683.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus IS-88]
gi|375027858|gb|EHS21216.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus IS-91]
gi|375034345|gb|EHS27511.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus IS-105]
gi|375036191|gb|EHS29269.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus IS-111]
gi|375040039|gb|EHS32945.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus IS-122]
gi|375366764|gb|EHS70745.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus IS-125]
gi|375374755|gb|EHS78378.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus IS-189]
gi|375377105|gb|EHS80598.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus IS-157]
gi|377694655|gb|EHT19020.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIG1165]
gi|377695185|gb|EHT19549.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIG1057]
gi|377697566|gb|EHT21921.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIG1114]
gi|377702518|gb|EHT26840.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIG1214]
gi|377703668|gb|EHT27981.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIG1500]
gi|377704903|gb|EHT29212.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIG1242]
gi|377710953|gb|EHT35191.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIG1605]
gi|377713099|gb|EHT37312.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIG1750]
gi|377714483|gb|EHT38684.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIG1769]
gi|377717774|gb|EHT41949.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIG1835]
gi|377722482|gb|EHT46608.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIG547]
gi|377723667|gb|EHT47792.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIG1096]
gi|377730640|gb|EHT54707.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIG1176]
gi|377731042|gb|EHT55100.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIG1213]
gi|377735257|gb|EHT59293.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIG1233]
gi|377738876|gb|EHT62885.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIG1612]
gi|377742936|gb|EHT66921.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIG1770]
gi|377744138|gb|EHT68116.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIG290]
gi|377744943|gb|EHT68920.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIG2018]
gi|377750688|gb|EHT74626.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIG1267]
gi|377752114|gb|EHT76038.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIG149]
gi|377752938|gb|EHT76856.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIG1524]
gi|377755374|gb|EHT79273.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIGC340D]
gi|377761286|gb|EHT85162.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIGC341D]
gi|377767260|gb|EHT91067.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIGC348]
gi|377769626|gb|EHT93394.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIGC93]
gi|377770679|gb|EHT94440.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus CIGC128]
gi|379993955|gb|EIA15400.1| Endonuclease involved in recombination [Staphylococcus aureus
subsp. aureus DR10]
gi|383363839|gb|EID41165.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus IS-M]
gi|383972989|gb|EID89010.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus CO-23]
gi|384230609|gb|AFH69856.1| Endonuclease involved in recombination [Staphylococcus aureus
subsp. aureus 71193]
gi|385196616|emb|CCG16245.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
HO 5096 0412]
gi|387718046|gb|EIK06041.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus VRS2]
gi|387718113|gb|EIK06107.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus VRS3a]
gi|387719253|gb|EIK07204.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus VRS1]
gi|387724790|gb|EIK12429.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus VRS4]
gi|387727227|gb|EIK14759.1| hypothetical protein MQI_01323 [Staphylococcus aureus subsp. aureus
VRS5]
gi|387729853|gb|EIK17266.1| hypothetical protein MQK_01936 [Staphylococcus aureus subsp. aureus
VRS6]
gi|387735153|gb|EIK22290.1| hypothetical protein MQO_02006 [Staphylococcus aureus subsp. aureus
VRS8]
gi|387736445|gb|EIK23539.1| hypothetical protein MQQ_02016 [Staphylococcus aureus subsp. aureus
VRS9]
gi|387736833|gb|EIK23921.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus VRS7]
gi|387744926|gb|EIK31690.1| hypothetical protein MQS_00523 [Staphylococcus aureus subsp. aureus
VRS10]
gi|387745093|gb|EIK31855.1| hypothetical protein MQU_01155 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|387746686|gb|EIK33415.1| hypothetical protein MQW_01435 [Staphylococcus aureus subsp. aureus
VRS11b]
gi|394331648|gb|EJE57731.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus str. Newbould 305]
gi|402346856|gb|EJU81926.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus CM05]
gi|404440455|gb|AFR73648.1| hypothetical protein C248_1658 [Staphylococcus aureus 08BA02176]
gi|421956860|gb|EKU09189.1| Putative Holliday junction resolvase [Staphylococcus aureus CN79]
gi|436431161|gb|ELP28515.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus DSM 20231]
gi|436506084|gb|ELP41923.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21282]
gi|443408446|gb|ELS66965.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21236]
gi|445548827|gb|ELY17074.1| Holliday junction resolvase-like protein [Staphylococcus aureus
KT/314250]
gi|445563428|gb|ELY19589.1| Holliday junction resolvase-like protein [Staphylococcus aureus
KT/Y21]
Length = 142
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 67/144 (46%), Gaps = 15/144 (10%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
+ LGLDVG + VG++ISD A L L + +L + +I + N+ ++G
Sbjct: 5 KILGLDVGSRTVGIAISDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVGTVVIGL 64
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAY-------WNEGFTSKGVELLLNPLDL 135
P N + F + S T K E + AY W+E ++ E L D+
Sbjct: 65 PKNMNNSIG-------FRGEASLTYK-EKLLEAYPSIEIVMWDERLSTMAAERSLLEADV 116
Query: 136 HPVEYKTILDKFAAVGILQEYLDN 159
+ K ++DK AAV ILQ YLD+
Sbjct: 117 SRQKRKQVIDKMAAVFILQGYLDS 140
>gi|424852623|ref|ZP_18277020.1| Holliday junction resolvase YqgF [Rhodococcus opacus PD630]
gi|356667288|gb|EHI47359.1| Holliday junction resolvase YqgF [Rhodococcus opacus PD630]
Length = 178
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 7/149 (4%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFR---SLISEFNLEG 77
RGR +G+DVG +G++ SDP +A+P+ + R K A D R ++ E+
Sbjct: 18 RGRRIGIDVGSVRIGVASSDPDGILATPVETVPRSKER-GPDAPDIRRIADIVEEYEAVE 76
Query: 78 FIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH 136
IVG P R + A +F L +K++ + +E T+ L +
Sbjct: 77 VIVGLPQTLRGERGKAASIATVFAKRLR--RKVDPIPVRMADERLTTVTAARALRESGVS 134
Query: 137 PVEYKTILDKFAAVGILQEYLDNANRKVN 165
+ ++D+ AAV ILQ +LD + VN
Sbjct: 135 ARGQRPVIDQVAAVAILQGWLDERSGSVN 163
>gi|443639877|ref|ZP_21123877.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21196]
gi|443406152|gb|ELS64736.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21196]
Length = 142
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 67/144 (46%), Gaps = 15/144 (10%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
+ LGLDVG + VG++ISD A L L + +L + +I + N+ ++G
Sbjct: 5 KILGLDVGSRTVGIAISDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVGTVVIGL 64
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAY-------WNEGFTSKGVELLLNPLDL 135
P N + F + S T K E + AY W+E ++ E L D+
Sbjct: 65 PKNMNNSIG-------FRGEASLTYK-EKLLEAYPSIEIVMWDERLSTMAAERSLLEADV 116
Query: 136 HPVEYKTILDKFAAVGILQEYLDN 159
+ K ++DK AAV ILQ YLD+
Sbjct: 117 SRQKRKQVIDKMAAVFILQGYLDS 140
>gi|452960611|gb|EME65926.1| Holliday junction resolvase-like protein [Rhodococcus ruber BKS
20-38]
Length = 173
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 7/150 (4%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFR---SLISEFNLEG 77
RGR +G+DVG +G++ SDP +A+P+ + R K A D R +++E+
Sbjct: 17 RGRRIGIDVGSVRIGVASSDPDGILATPVETVPRSKER-GPDAPDIRRIVDIVTEYEAVE 75
Query: 78 FIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH 136
IVG P R + A + F L +++ + +E FT+ L +
Sbjct: 76 VIVGLPQTLRGEPGKAAKLARDFAGRLR--RRMTGIPVRMADERFTTVTAARALRESGVS 133
Query: 137 PVEYKTILDKFAAVGILQEYLDNANRKVNL 166
+ ++D+ AAV ILQ +LD + VN+
Sbjct: 134 ARGARPVIDQAAAVAILQGWLDERSAVVNV 163
>gi|315037653|ref|YP_004031221.1| Holliday junction resolvase-like protein [Lactobacillus amylovorus
GRL 1112]
gi|325956138|ref|YP_004286748.1| Holliday junction resolvase-like protein [Lactobacillus acidophilus
30SC]
gi|385817008|ref|YP_005853398.1| Holliday junction resolvase-like protein [Lactobacillus amylovorus
GRL1118]
gi|312275786|gb|ADQ58426.1| Holliday junction resolvase-like protein [Lactobacillus amylovorus
GRL 1112]
gi|325332703|gb|ADZ06611.1| Holliday junction resolvase-like protein [Lactobacillus acidophilus
30SC]
gi|327182946|gb|AEA31393.1| Holliday junction resolvase-like protein [Lactobacillus amylovorus
GRL1118]
Length = 142
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 72/142 (50%), Gaps = 12/142 (8%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG K VG+++SD A L + + + + L+ +++ EGF++G
Sbjct: 2 RLLGLDVGSKTVGVAVSDELGITAQKLETIQIDETKYNFGMRPLKKLVRQYDPEGFVLGL 61
Query: 83 PFNRQQNAADAV-QVKLFIDDLSATKKLED---MKYAYWNEGFTS-KGVELLLNPLDLHP 137
P N + +V + K + K+LE+ + Y +E T+ + +L+ +H
Sbjct: 62 PKNMDGTSGSSVARSKAY------GKRLEEKFGLPVYYSDERLTTIESQRVLVEDAGIHD 115
Query: 138 V-EYKTILDKFAAVGILQEYLD 158
+ K ++D+ AAV ILQ YLD
Sbjct: 116 RKKRKQVIDQMAAVLILQNYLD 137
>gi|337268698|ref|YP_004612753.1| Holliday junction resolvase YqgF [Mesorhizobium opportunistum
WSM2075]
gi|336029008|gb|AEH88659.1| Holliday junction resolvase YqgF [Mesorhizobium opportunistum
WSM2075]
Length = 168
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 7/139 (5%)
Query: 22 GRFL-GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV 80
GR L GLD+GDK +G+++SD A P V++R+K L A +L+ + N ++
Sbjct: 16 GRTLAGLDLGDKTIGVAVSDRGFSFAHPRPVIIRRK--FSLDAAVLLALLKKENAGAVVI 73
Query: 81 GYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
G P N + Q + F+ +++ +L D+ + +W+E ++ E L +D +
Sbjct: 74 GLPINMDGSEGPRAQKSRAFVRNMA---QLSDLPFVFWDERLSTVAAERTLIEMDFSRAK 130
Query: 140 YKTILDKFAAVGILQEYLD 158
+D AA ILQ LD
Sbjct: 131 RAGKIDSAAAAFILQGVLD 149
>gi|161506985|ref|YP_001576939.1| putative DNA recombination protein [Lactobacillus helveticus DPC
4571]
gi|172048187|sp|A8YTJ2.1|RUVX_LACH4 RecName: Full=Putative Holliday junction resolvase
gi|160347974|gb|ABX26648.1| putative DNA recombination protein [Lactobacillus helveticus DPC
4571]
Length = 142
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 12/142 (8%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD+G K VG+S+SD A L + + + + L+ ++ ++GF++G
Sbjct: 2 RLLGLDIGSKTVGVSVSDELGITAQKLETIKIDETKYNFGMRPLKKLVRQYEVDGFVLGL 61
Query: 83 PFNRQ-QNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTS-KGVELLLNPLDLHP 137
P N + A + K + K+LE+ + Y +E T+ + +L+ +H
Sbjct: 62 PKNMDGTSGASVARSKAY------GKRLEEKFGLPVHYSDERLTTIESRRVLVEDAGIHD 115
Query: 138 V-EYKTILDKFAAVGILQEYLD 158
+ K ++D+ AAV ILQ YLD
Sbjct: 116 RKKRKQVIDQMAAVLILQNYLD 137
>gi|268608523|ref|ZP_06142250.1| Holliday junction resolvase YqgF [Ruminococcus flavefaciens FD-1]
Length = 143
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 6/136 (4%)
Query: 24 FLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYP 83
+ +D GD G+++ IASP++V+ K D E +L E E +VGYP
Sbjct: 3 IMSVDFGDARTGIAVCGKSEMIASPVTVIPEKD--FDKCIEKTAALAKEQRAEQIVVGYP 60
Query: 84 FNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
N + + LF + L +++ + W+E T+ LN + + K
Sbjct: 61 KNMNGTIGERCEKCTLFAEKL---EEMTGIPTRLWDERCTTVSAHNYLNVTNTRGKKRKN 117
Query: 143 ILDKFAAVGILQEYLD 158
++D AAV IL+ YL+
Sbjct: 118 VVDAVAAVIILESYLE 133
>gi|257063514|ref|YP_003143186.1| hypothetical protein Shel_07810 [Slackia heliotrinireducens DSM
20476]
gi|256791167|gb|ACV21837.1| conserved hypothetical protein TIGR00250 [Slackia
heliotrinireducens DSM 20476]
Length = 138
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 69/140 (49%), Gaps = 6/140 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R L LD+G+ +GL++SD +IASPL VL + + +FR L+ ++ +E + G
Sbjct: 2 RVLALDIGEVRIGLAVSDAAGRIASPLKVL--PADVVLNDGREFRMLVEDWEIEHLVCGL 59
Query: 83 PFNRQ-QNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P+ + A +K +++ + D+ ++ +E +S + +L L +
Sbjct: 60 PYTMAGEEGPQAASIKEKARQIASAR---DLPLSFVDERLSSAEAKRILREEGLDERSMR 116
Query: 142 TILDKFAAVGILQEYLDNAN 161
+D AA LQ +LD+ +
Sbjct: 117 GKVDMIAASLFLQAWLDSHD 136
>gi|428202494|ref|YP_007081083.1| RNAse H-fold protein YqgF [Pleurocapsa sp. PCC 7327]
gi|427979926|gb|AFY77526.1| RNAse H-fold protein YqgF [Pleurocapsa sp. PCC 7327]
Length = 148
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 66/136 (48%), Gaps = 6/136 (4%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
LGLDVG K +G++ D IA+ ++ + R DL E R L+ E +++ +VG P+
Sbjct: 7 LGLDVGKKRIGVAGCDGTGLIATGITTIERTSFERDL--EQLRQLVEERDVQILVVGLPY 64
Query: 85 NRQQNAA-DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143
+ + A QV+ F LS K + Y +E TS E L K
Sbjct: 65 SMDGSLGFQARQVQKFARRLS---KALQLPVEYVDERLTSLEAEQQLKERKQFSSRDKGA 121
Query: 144 LDKFAAVGILQEYLDN 159
+D+ AA ILQ++LD+
Sbjct: 122 IDRLAAAIILQQWLDS 137
>gi|188582759|ref|YP_001926204.1| Holliday junction resolvase YqgF [Methylobacterium populi BJ001]
gi|179346257|gb|ACB81669.1| Holliday junction resolvase YqgF [Methylobacterium populi BJ001]
Length = 165
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 6/137 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLD+G K +G+++SD +IASPL + R K T D A +L + + G ++G
Sbjct: 18 RLIGLDLGTKTIGIALSDVGRQIASPLETIRRVKFTPD--AGRIVALCAAHGVGGLVIGL 75
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + Q + F +L + +++E ++ V L D
Sbjct: 76 PLNMDGSEGPRAQSSRSFARNLRPLLP---LPVLFFDERLSTAAVTRTLLEADASRARRG 132
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ LD
Sbjct: 133 EVVDKLAAAYILQSCLD 149
>gi|427411361|ref|ZP_18901563.1| RNAse H-fold protein YqgF [Sphingobium yanoikuyae ATCC 51230]
gi|425710546|gb|EKU73568.1| RNAse H-fold protein YqgF [Sphingobium yanoikuyae ATCC 51230]
Length = 157
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 68/139 (48%), Gaps = 7/139 (5%)
Query: 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 81
GR +G+DVG K +GL++ D + IASP + R K + D A + +++ ++G ++G
Sbjct: 19 GRLIGMDVGTKTIGLALCDAQWSIASPAYTVNRGKFSKDKPA--LEAFMAQQQVKGIVIG 76
Query: 82 YPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
P N N+ + + F +++ + W+E ++++ V L D
Sbjct: 77 LPLNLDGTNSPRSQASRAFAHNVADIG----LPVLLWDERWSTQAVTRTLLEADASRARR 132
Query: 141 KTILDKFAAVGILQEYLDN 159
++DK AA ILQ +D
Sbjct: 133 DELVDKLAASYILQGAIDG 151
>gi|422340359|ref|ZP_16421310.1| DNA integration/recombination/inversion protein [Fusobacterium
nucleatum subsp. polymorphum F0401]
gi|355369352|gb|EHG16748.1| DNA integration/recombination/inversion protein [Fusobacterium
nucleatum subsp. polymorphum F0401]
Length = 138
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 78/139 (56%), Gaps = 9/139 (6%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKK-NTIDLMAEDFRSLISEFNLEGFIVG 81
R++ LD+GD +G++ SD IASPL + RKK ++ +AE + E + +VG
Sbjct: 3 RYIALDIGDVRIGVARSDIMGIIASPLETINRKKIKSVKRIAE----ICKENDTNLIVVG 58
Query: 82 YPFNRQ-QNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH-PVE 139
P + + A +V+ +I+ L K++++++ +E F++ + +L L+ + +E
Sbjct: 59 IPKSLDGEEKRQAEKVREYIEKLK--KEIKNLEIIEVDERFSTVIADNILKELNKNGAIE 116
Query: 140 YKTILDKFAAVGILQEYLD 158
+ ++DK AA ILQ YLD
Sbjct: 117 KRKVVDKVAASIILQTYLD 135
>gi|119484674|ref|ZP_01619156.1| Holliday junction resolvase-like protein [Lyngbya sp. PCC 8106]
gi|119457492|gb|EAW38616.1| Holliday junction resolvase-like protein [Lyngbya sp. PCC 8106]
Length = 149
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 4/135 (2%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
LGLD+G K +G++ D A+ L L K++ + R L+ + ++ +VG P+
Sbjct: 13 LGLDIGQKRIGVAGCDGLGLFATGLMTL--KRSAFERDVAQLRELVEDRRVQVLVVGLPY 70
Query: 85 NRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
+ N Q K + K D+ Y +E TS E +L + P K ++
Sbjct: 71 S--MNGTIGFQAKKVQKYATGLAKALDLPLEYVDERLTSFQAEQMLRDAHISPSRNKGLI 128
Query: 145 DKFAAVGILQEYLDN 159
D+ AA ILQ++LD
Sbjct: 129 DRKAAAIILQQWLDQ 143
>gi|62317546|ref|YP_223399.1| Holliday junction resolvase-like protein [Brucella abortus bv. 1
str. 9-941]
gi|83269527|ref|YP_418818.1| Holliday junction resolvase-like protein [Brucella melitensis
biovar Abortus 2308]
gi|189022801|ref|YP_001932542.1| Holliday junction resolvase-like protein [Brucella abortus S19]
gi|237817094|ref|ZP_04596086.1| conserved hypothetical protein [Brucella abortus str. 2308 A]
gi|260544782|ref|ZP_05820603.1| ribonuclease RNase H fold containing protein [Brucella abortus NCTC
8038]
gi|260756639|ref|ZP_05868987.1| holliday junction resolvase YqgF [Brucella abortus bv. 6 str. 870]
gi|260760069|ref|ZP_05872417.1| holliday junction resolvase YqgF [Brucella abortus bv. 4 str. 292]
gi|260763308|ref|ZP_05875640.1| holliday junction resolvase YqgF [Brucella abortus bv. 2 str.
86/8/59]
gi|260882456|ref|ZP_05894070.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
gi|261216050|ref|ZP_05930331.1| holliday junction resolvase YqgF [Brucella abortus bv. 3 str.
Tulya]
gi|297249585|ref|ZP_06933286.1| hypothetical protein BAYG_02344 [Brucella abortus bv. 5 str. B3196]
gi|376271184|ref|YP_005114229.1| endonuclease [Brucella abortus A13334]
gi|423168559|ref|ZP_17155261.1| RNAse H-fold protein YqgF [Brucella abortus bv. 1 str. NI435a]
gi|423172008|ref|ZP_17158682.1| RNAse H-fold protein YqgF [Brucella abortus bv. 1 str. NI474]
gi|423174261|ref|ZP_17160931.1| RNAse H-fold protein YqgF [Brucella abortus bv. 1 str. NI486]
gi|423176138|ref|ZP_17162804.1| RNAse H-fold protein YqgF [Brucella abortus bv. 1 str. NI488]
gi|423181437|ref|ZP_17168077.1| RNAse H-fold protein YqgF [Brucella abortus bv. 1 str. NI010]
gi|423184570|ref|ZP_17171206.1| RNAse H-fold protein YqgF [Brucella abortus bv. 1 str. NI016]
gi|423187720|ref|ZP_17174333.1| RNAse H-fold protein YqgF [Brucella abortus bv. 1 str. NI021]
gi|423190141|ref|ZP_17176750.1| RNAse H-fold protein YqgF [Brucella abortus bv. 1 str. NI259]
gi|81309292|sp|Q577Z6.1|RUVX_BRUAB RecName: Full=Putative Holliday junction resolvase
gi|146325555|sp|Q2YKL6.1|RUVX_BRUA2 RecName: Full=Putative Holliday junction resolvase
gi|226725492|sp|B2SB59.1|RUVX_BRUA1 RecName: Full=Putative Holliday junction resolvase
gi|62197739|gb|AAX76038.1| conserved hypothetical protein TIGR00250 [Brucella abortus bv. 1
str. 9-941]
gi|82939801|emb|CAJ12809.1| Conserved hypothetical protein 250:Ribonuclease RNase H fold
containing [Brucella melitensis biovar Abortus 2308]
gi|189021375|gb|ACD74096.1| Ribonuclease RNase H fold containing [Brucella abortus S19]
gi|237787907|gb|EEP62123.1| conserved hypothetical protein [Brucella abortus str. 2308 A]
gi|260098053|gb|EEW81927.1| ribonuclease RNase H fold containing protein [Brucella abortus NCTC
8038]
gi|260670387|gb|EEX57327.1| holliday junction resolvase YqgF [Brucella abortus bv. 4 str. 292]
gi|260673729|gb|EEX60550.1| holliday junction resolvase YqgF [Brucella abortus bv. 2 str.
86/8/59]
gi|260676747|gb|EEX63568.1| holliday junction resolvase YqgF [Brucella abortus bv. 6 str. 870]
gi|260871984|gb|EEX79053.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
gi|260917657|gb|EEX84518.1| holliday junction resolvase YqgF [Brucella abortus bv. 3 str.
Tulya]
gi|297173454|gb|EFH32818.1| hypothetical protein BAYG_02344 [Brucella abortus bv. 5 str. B3196]
gi|363402356|gb|AEW19325.1| putative endonuclease involved in recombination [Brucella abortus
A13334]
gi|374536430|gb|EHR07950.1| RNAse H-fold protein YqgF [Brucella abortus bv. 1 str. NI474]
gi|374537765|gb|EHR09275.1| RNAse H-fold protein YqgF [Brucella abortus bv. 1 str. NI435a]
gi|374540262|gb|EHR11764.1| RNAse H-fold protein YqgF [Brucella abortus bv. 1 str. NI486]
gi|374546027|gb|EHR17487.1| RNAse H-fold protein YqgF [Brucella abortus bv. 1 str. NI010]
gi|374546870|gb|EHR18329.1| RNAse H-fold protein YqgF [Brucella abortus bv. 1 str. NI016]
gi|374554740|gb|EHR26150.1| RNAse H-fold protein YqgF [Brucella abortus bv. 1 str. NI488]
gi|374555524|gb|EHR26933.1| RNAse H-fold protein YqgF [Brucella abortus bv. 1 str. NI021]
gi|374556181|gb|EHR27586.1| RNAse H-fold protein YqgF [Brucella abortus bv. 1 str. NI259]
Length = 162
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 6/134 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+G K +GL++SD A P V+ R K TID A+ + + ++G P N
Sbjct: 21 GLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFTID--AQVLLKALETDKVGVIMIGLPMN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
A VQ + F+ + + L D+ + +W+E ++ E L +D+ + +
Sbjct: 79 MDGTAGPRVQATRAFVRTM---QPLTDLPFVFWDERLSTVAAERALIGMDVSRGKRADRI 135
Query: 145 DKFAAVGILQEYLD 158
D AA ILQ LD
Sbjct: 136 DSAAAAFILQGALD 149
>gi|339443240|ref|YP_004709245.1| hypothetical protein CXIVA_21760 [Clostridium sp. SY8519]
gi|338902641|dbj|BAK48143.1| hypothetical protein CXIVA_21760 [Clostridium sp. SY8519]
Length = 153
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 3/144 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKK-NTIDLMAEDFRSLISEFNLEGFIVG 81
R +GLD G K VG+++SDP A + ++ RK + + + L E+++ ++G
Sbjct: 7 RIMGLDFGSKTVGVAVSDPLLITAQGVEIIRRKSPSKLRQTLARIQELTEEYDIGTIVLG 66
Query: 82 YPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
YP R N + + ++ +K + W+E ++ E ++ + K
Sbjct: 67 YP--RNMNGTEGERCGKTMEFKEMLEKRLSLPVTLWDERLSTVESEQIMIRRGIRREHRK 124
Query: 142 TILDKFAAVGILQEYLDNANRKVN 165
+D+ AA ILQ YLD + R+ N
Sbjct: 125 EYVDQIAATIILQGYLDFSAREEN 148
>gi|229553800|ref|ZP_04442525.1| crossover junction endodeoxyribonuclease [Lactobacillus rhamnosus
LMS2-1]
gi|385834683|ref|YP_005872457.1| hypothetical protein LRHK_768 [Lactobacillus rhamnosus ATCC 8530]
gi|229312823|gb|EEN78796.1| crossover junction endodeoxyribonuclease [Lactobacillus rhamnosus
LMS2-1]
gi|355394174|gb|AER63604.1| conserved hypothetical protein [Lactobacillus rhamnosus ATCC 8530]
Length = 144
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG + VG+++SDP A L ++ ++ + L++++ + F++G
Sbjct: 2 RLMGLDVGSRTVGVAVSDPLGWTAQGLEIIRINEDKQQFGLTRLKELVTQYEVTAFVLGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTS-KGVELLLNPLDLHPVEYK 141
P N + + DL K+ + + +E T+ + +L+ D K
Sbjct: 62 PKNMNNSIGPRAEKSQAYGDL--LKETFGLPVDFIDERLTTVEASRMLIEEADASRKRQK 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 120 QVIDKLAAQMILQNYLD 136
>gi|427731490|ref|YP_007077727.1| RNAse H-fold protein YqgF [Nostoc sp. PCC 7524]
gi|427367409|gb|AFY50130.1| RNAse H-fold protein YqgF [Nostoc sp. PCC 7524]
Length = 152
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 77/148 (52%), Gaps = 8/148 (5%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
LGLDVG K +G++ D IA+ ++ + R D+ ++ R++++E +E IVG P+
Sbjct: 8 LGLDVGRKRLGVAGCDRTGLIATGITTVERTSFEQDV--QEIRNIVNERQVEVLIVGLPY 65
Query: 85 NRQQNAA-DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143
+ A Q++ F L+ K + Y +E TS E L+ + P K +
Sbjct: 66 SMDGTLGFQARQIQKFATRLA---KALQLPIEYVDERLTSFQAEQLIIAENRSPSRNKGL 122
Query: 144 LDKFAAVGILQEYLDNANRKVNLKANVL 171
+D+ AA ILQ++LD R+ N ++V+
Sbjct: 123 IDRKAAALILQQWLD--IRRANALSSVV 148
>gi|404483164|ref|ZP_11018388.1| RNAse H-fold protein YqgF [Clostridiales bacterium OBRC5-5]
gi|404343716|gb|EJZ70076.1| RNAse H-fold protein YqgF [Clostridiales bacterium OBRC5-5]
Length = 143
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 5/141 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLR-KKNTIDLMAEDFRSLISEFNLEGFIVG 81
R +GLD G K +G++ISD A P + R +N + ++ E +++ +VG
Sbjct: 4 RIMGLDYGSKTIGVAISDALGLTAQPFETIERNAENKLRRSLARIAEIVKEKDIKKIVVG 63
Query: 82 YPFNRQQNAADAVQVKL-FIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
P N + + V + L F++ L K D+ +E T+K + +L+ + +
Sbjct: 64 LPVNMDGGSGERVALTLEFVEKL---KSRVDVPIIMQDERLTTKEADEILDESGVKKQDR 120
Query: 141 KTILDKFAAVGILQEYLDNAN 161
K +D+ AA IL+EY++ N
Sbjct: 121 KQFIDQVAASIILKEYMEKEN 141
>gi|315652510|ref|ZP_07905494.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Lachnoanaerobaculum saburreum DSM 3986]
gi|419719186|ref|ZP_14246473.1| RNAse H domain protein, YqgF family [Lachnoanaerobaculum saburreum
F0468]
gi|315485226|gb|EFU75624.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Lachnoanaerobaculum saburreum DSM 3986]
gi|383304704|gb|EIC96102.1| RNAse H domain protein, YqgF family [Lachnoanaerobaculum saburreum
F0468]
Length = 145
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 3/142 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLR-KKNTIDLMAEDFRSLISEFNLEGFIVG 81
R +GLD G K +G++ISD A P + R K+N + ++ E N++ +VG
Sbjct: 6 RIMGLDYGSKTIGVAISDSLGLTAQPFETIERSKENKLRRSLAKIAKIVEEKNIKKIVVG 65
Query: 82 YPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N N +V L ++ + K+ D+ +E T+ + +L+ + K
Sbjct: 66 LPVN--MNGRRGKRVSLTLEFVEKLKQRVDVPIIMQDERLTTVEADEILDESGVKKENRK 123
Query: 142 TILDKFAAVGILQEYLDNANRK 163
+D AA IL+EY++ N K
Sbjct: 124 QFIDMVAAGIILREYMEKENGK 145
>gi|392972280|ref|ZP_10337672.1| putative Holliday junction resolvase [Staphylococcus equorum subsp.
equorum Mu2]
gi|392509993|emb|CCI60975.1| putative Holliday junction resolvase [Staphylococcus equorum subsp.
equorum Mu2]
Length = 142
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 7/147 (4%)
Query: 13 MLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISE 72
MLK K+ LGLDVG K VG+++SD A L L + +L E +I +
Sbjct: 1 MLKHKI------LGLDVGSKTVGIAVSDLMGWTAQGLDTLRIDEENNELGIEQLVKIIKK 54
Query: 73 FNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNP 132
N+ ++G P N + + L + + L ++ W+E ++ E L
Sbjct: 55 ENVGSVVIGLPKNMNNSIGFRGEASLQYKE-QLQEALPSVEIIMWDERLSTMAAERSLLE 113
Query: 133 LDLHPVEYKTILDKFAAVGILQEYLDN 159
D+ + K ++DK AAV ILQ YL++
Sbjct: 114 ADVSRQKRKKVIDKMAAVFILQGYLNS 140
>gi|398311601|ref|ZP_10515075.1| Holliday junction resolvase-like protein [Bacillus mojavensis
RO-H-1]
Length = 138
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 8/142 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD+G K +G+++SD A + + + D L ++ ++ ++G+
Sbjct: 2 RILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLPRLSELTKDYTIDKIVLGF 61
Query: 83 PFNRQQNAA---DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
P N +A Q F L T ++ W+E T+ E +L D+ +
Sbjct: 62 PKNMNGTVGPRGEASQA--FAKVLETTY---NVPVVLWDERLTTMAAEKMLIAADVSRQK 116
Query: 140 YKTILDKFAAVGILQEYLDNAN 161
K ++DK AAV ILQ YLD+ N
Sbjct: 117 RKKVIDKMAAVMILQGYLDSLN 138
>gi|428206441|ref|YP_007090794.1| Holliday junction resolvase YqgF [Chroococcidiopsis thermalis PCC
7203]
gi|428008362|gb|AFY86925.1| Holliday junction resolvase YqgF [Chroococcidiopsis thermalis PCC
7203]
Length = 164
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 68/136 (50%), Gaps = 6/136 (4%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
LGLD+G K +G++ D IA+ L + RK DL +SL+ ++ + G P+
Sbjct: 19 LGLDLGRKRIGVAGCDGTGLIATGLMTIERKSFAEDLA--QLQSLVQSRRVQTIVAGLPY 76
Query: 85 NRQQNAA-DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143
+ + A QV+ ++ K D+ + +E TS E ++ ++ P +K +
Sbjct: 77 SMDGSLGFQARQVQKVAKRIA---KALDLPLVFVDERLTSFQAEQFMHAENISPSRHKAL 133
Query: 144 LDKFAAVGILQEYLDN 159
+D+ AA ILQ++LD
Sbjct: 134 IDRKAAAIILQQWLDT 149
>gi|395779907|ref|ZP_10460375.1| RNAse H-fold protein YqgF [Bartonella washoensis 085-0475]
gi|395419657|gb|EJF85953.1| RNAse H-fold protein YqgF [Bartonella washoensis 085-0475]
Length = 159
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 70/137 (51%), Gaps = 12/137 (8%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEG---FIVGY 82
GLD+G K +G+++SD +++P SVL RKK +D R+LI F+ E I+G
Sbjct: 21 GLDLGTKTIGIAVSDRGLFLSNPRSVLQRKKFMLDA-----RTLIQIFDRENVGVIIIGL 75
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N ++ Q + F+ ++ A ++ + +W+E ++ E L +++ +
Sbjct: 76 PLNMNGSSGPRAQATRTFVSNMEA---YTEIPFVFWDERLSTIAAERSLLEMNISRAKRA 132
Query: 142 TILDKFAAVGILQEYLD 158
+D AA ILQ L+
Sbjct: 133 NRIDSAAAAFILQGALN 149
>gi|302871987|ref|YP_003840623.1| Holliday junction resolvase YqgF [Caldicellulosiruptor obsidiansis
OB47]
gi|302574846|gb|ADL42637.1| Holliday junction resolvase YqgF [Caldicellulosiruptor obsidiansis
OB47]
Length = 172
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 64/111 (57%), Gaps = 7/111 (6%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPL-SVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 81
R L LD+G+ VG++ISDP A PL ++ L+ K+ D + + F + +N+E ++G
Sbjct: 2 RILCLDIGNSRVGVAISDPLKITAQPLMTIELKNKDLFDELDKIFHT----YNIEKVVIG 57
Query: 82 YPFNRQQNAADAVQVKLFIDDLSA-TKKLEDMKYAYWNEGFTSKGVELLLN 131
YP ++ ++K ID++S+ +++ W+E F++K VE ++N
Sbjct: 58 YPLSKLHPDLKDEKLKK-IDEISSRIGSRYNVEIVKWDERFSTKAVERVMN 107
>gi|340756427|ref|ZP_08693039.1| Holliday junction resolvase [Fusobacterium sp. D12]
gi|419840709|ref|ZP_14364096.1| RNAse H domain protein, YqgF family [Fusobacterium necrophorum
subsp. funduliforme ATCC 51357]
gi|421501369|ref|ZP_15948334.1| RNAse H domain protein, YqgF family [Fusobacterium necrophorum
subsp. funduliforme Fnf 1007]
gi|313685908|gb|EFS22743.1| Holliday junction resolvase [Fusobacterium sp. D12]
gi|386907245|gb|EIJ71959.1| RNAse H domain protein, YqgF family [Fusobacterium necrophorum
subsp. funduliforme ATCC 51357]
gi|402266045|gb|EJU15496.1| RNAse H domain protein, YqgF family [Fusobacterium necrophorum
subsp. funduliforme Fnf 1007]
Length = 139
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 71/138 (51%), Gaps = 7/138 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
++L LDVGD +G++ SDP +A PL + R+K + L E N + +VG
Sbjct: 4 KYLALDVGDVRIGVAKSDPLGMLAIPLETIDRRKEK---PVKRIMQLCEEENTKSIVVGI 60
Query: 83 PFNRQ-QNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH-PVEY 140
P + A +V++FI L + + ++ +E FT+ + +L ++ +E
Sbjct: 61 PKSLDGSEKRQAEKVRIFIHALKSA--IPGVEILEVDERFTTVTADRILTEMNRKGALEK 118
Query: 141 KTILDKFAAVGILQEYLD 158
+ ++DK AA ILQ+YL+
Sbjct: 119 RKVVDKVAASLILQQYLN 136
>gi|374709564|ref|ZP_09713998.1| RNase H-like ribonuclease [Sporolactobacillus inulinus CASD]
Length = 142
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 4/136 (2%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLD G G++ISDP A + + ++ +L+ + LI ++ +E +VG P
Sbjct: 1 MGLDFGSVTCGVAISDPLGWTAQGIETIHYVEHKKNLLFDRIGQLIHDYAVESVVVGLPK 60
Query: 85 NR-QQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143
+ +A A + F + KL W+E T+ E +L D+ + K +
Sbjct: 61 DLIGTESARAEASRGFAKSIHRKLKL---PVELWDERLTTMAAERILISADVSRKKRKQV 117
Query: 144 LDKFAAVGILQEYLDN 159
+DK AAV ILQ YLD
Sbjct: 118 IDKEAAVLILQSYLDK 133
>gi|425737450|ref|ZP_18855723.1| Holliday junction resolvase-like protein [Staphylococcus
massiliensis S46]
gi|425482798|gb|EKU49954.1| Holliday junction resolvase-like protein [Staphylococcus
massiliensis S46]
Length = 142
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 73/149 (48%), Gaps = 7/149 (4%)
Query: 13 MLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISE 72
MLK K+ +GLDVG K VG++ISD A L L ++ +L + +I++
Sbjct: 1 MLKHKI------IGLDVGSKTVGIAISDLMGWTAQGLDTLRINEDKGELGIDRIVEIINK 54
Query: 73 FNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNP 132
++ ++G P N + + L + A + +++ W+E ++ E L
Sbjct: 55 EDVGSVVIGLPKNMNNSIGFRGEASLQYKEKLA-EACPNLELIMWDERLSTMAAERSLLE 113
Query: 133 LDLHPVEYKTILDKFAAVGILQEYLDNAN 161
D+ + K ++DK AAV ILQ YLD+ N
Sbjct: 114 ADVSRQKRKKVIDKMAAVFILQGYLDSLN 142
>gi|443290399|ref|ZP_21029493.1| Holliday junction resolvase [Micromonospora lupini str. Lupac 08]
gi|385886524|emb|CCH17567.1| Holliday junction resolvase [Micromonospora lupini str. Lupac 08]
Length = 152
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 68/148 (45%), Gaps = 7/148 (4%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTI-DLMAED---FRSLISEFNLE 76
RG +G+DVG VG+S SDP +A+PL L R D + D +L++E
Sbjct: 6 RGVRIGVDVGQVRVGVSRSDPDGVLATPLVTLARDLTAAPDAVPSDLAQLAALVAEHEAV 65
Query: 77 GFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDL 135
+VG P N ++ AV VK + D L + + +E ++ L +
Sbjct: 66 QVVVGLPVNLAGKHGPAAVGVKAYADRL--VDVIAPVPVTLTDERMSTVVASRRLAERGV 123
Query: 136 HPVEYKTILDKFAAVGILQEYLDNANRK 163
+ ++D+ AAV ILQ +LD R+
Sbjct: 124 RGKRQRAVVDQAAAVEILQSWLDAQRRR 151
>gi|218531575|ref|YP_002422391.1| Holliday junction resolvase YqgF [Methylobacterium extorquens CM4]
gi|218523878|gb|ACK84463.1| Holliday junction resolvase YqgF [Methylobacterium extorquens CM4]
Length = 165
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 6/137 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLD+G K +G+++SD +IASPL + R K T D+ SL + + G ++G
Sbjct: 18 RLIGLDLGTKTIGIALSDVGRQIASPLETIRRVKFTPDV--ARIVSLCATHAVGGLVIGL 75
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + Q + F +L + +++E ++ V L D
Sbjct: 76 PLNMDGSEGPRAQSSRSFARNLKPLLP---LPVLFFDERLSTAAVTRTLIEADASRARRG 132
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ LD
Sbjct: 133 ELVDKLAAAYILQSCLD 149
>gi|116617674|ref|YP_818045.1| Holliday junction resolvase-like protein [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
gi|122272125|sp|Q03YQ0.1|RUVX_LEUMM RecName: Full=Putative Holliday junction resolvase
gi|116096521|gb|ABJ61672.1| RNase H-like ribonuclease [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
Length = 143
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 70/141 (49%), Gaps = 3/141 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG + VG+S+SDP A + ++ ++ + + +I E N G ++G
Sbjct: 2 RILGLDVGSRTVGVSVSDPMGWTAQGVEIIRINEDEKEFGIDRLGEIIKEKNATGVVLGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N N ++ + + + +K + + +E T+ E +L+ ++ + K
Sbjct: 62 PKN--MNNSEGPRAEASRNYAKLIEKTFGLPTDFQDERLTTVEAERMLIEEANISRKKRK 119
Query: 142 TILDKFAAVGILQEYLDNANR 162
++DK AA ILQ YLD+ +
Sbjct: 120 KVIDKIAAEFILQNYLDSKGK 140
>gi|29375778|ref|NP_814932.1| Holliday junction resolvase-like protein [Enterococcus faecalis
V583]
gi|227518457|ref|ZP_03948506.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
TX0104]
gi|227552987|ref|ZP_03983036.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
HH22]
gi|229546119|ref|ZP_04434844.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
TX1322]
gi|229550308|ref|ZP_04439033.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
ATCC 29200]
gi|255973080|ref|ZP_05423666.1| conserved hypothetical protein [Enterococcus faecalis T1]
gi|255976119|ref|ZP_05426705.1| conserved hypothetical protein [Enterococcus faecalis T2]
gi|256618786|ref|ZP_05475632.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
gi|256762206|ref|ZP_05502786.1| conserved hypothetical protein [Enterococcus faecalis T3]
gi|256852851|ref|ZP_05558221.1| conserved hypothetical protein [Enterococcus faecalis T8]
gi|256958695|ref|ZP_05562866.1| conserved hypothetical protein [Enterococcus faecalis DS5]
gi|256962207|ref|ZP_05566378.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
gi|256965397|ref|ZP_05569568.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
gi|257077951|ref|ZP_05572312.1| conserved hypothetical protein [Enterococcus faecalis JH1]
gi|257082840|ref|ZP_05577201.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
gi|257085538|ref|ZP_05579899.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
gi|257086556|ref|ZP_05580917.1| conserved hypothetical protein [Enterococcus faecalis D6]
gi|257089613|ref|ZP_05583974.1| conserved hypothetical protein [Enterococcus faecalis CH188]
gi|257415820|ref|ZP_05592814.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
gi|257419029|ref|ZP_05596023.1| conserved hypothetical protein [Enterococcus faecalis T11]
gi|257422886|ref|ZP_05599876.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|293383234|ref|ZP_06629150.1| putative Holliday junction resolvase [Enterococcus faecalis R712]
gi|293387611|ref|ZP_06632157.1| putative Holliday junction resolvase [Enterococcus faecalis S613]
gi|294781118|ref|ZP_06746468.1| RNAse YqgF [Enterococcus faecalis PC1.1]
gi|300859927|ref|ZP_07106015.1| RNAse YqgF [Enterococcus faecalis TUSoD Ef11]
gi|307268684|ref|ZP_07550053.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX4248]
gi|307273508|ref|ZP_07554752.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0855]
gi|307274473|ref|ZP_07555656.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX2134]
gi|307279022|ref|ZP_07560080.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0860]
gi|307288496|ref|ZP_07568482.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0109]
gi|307291186|ref|ZP_07571071.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0411]
gi|312899674|ref|ZP_07758998.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0470]
gi|312903954|ref|ZP_07763123.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0635]
gi|312907178|ref|ZP_07766169.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
DAPTO 512]
gi|312909797|ref|ZP_07768645.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
DAPTO 516]
gi|312951035|ref|ZP_07769943.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0102]
gi|384512939|ref|YP_005708032.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
OG1RF]
gi|397699584|ref|YP_006537372.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
D32]
gi|422686121|ref|ZP_16744329.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX4000]
gi|422688521|ref|ZP_16746669.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0630]
gi|422691193|ref|ZP_16749231.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0031]
gi|422694683|ref|ZP_16752671.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX4244]
gi|422703050|ref|ZP_16760878.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX1302]
gi|422705132|ref|ZP_16762936.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0043]
gi|422710983|ref|ZP_16767917.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0027]
gi|422715035|ref|ZP_16771758.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0309A]
gi|422716233|ref|ZP_16772949.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0309B]
gi|422721232|ref|ZP_16777827.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0017]
gi|422722150|ref|ZP_16778726.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX2137]
gi|422726660|ref|ZP_16783104.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0312]
gi|422728068|ref|ZP_16784487.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0012]
gi|422731365|ref|ZP_16787733.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0645]
gi|422736668|ref|ZP_16792931.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX1341]
gi|422738440|ref|ZP_16793635.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX2141]
gi|422868112|ref|ZP_16914660.1| RNAse H domain protein, YqgF family [Enterococcus faecalis TX1467]
gi|424671444|ref|ZP_18108443.1| RNAse H domain protein, YqgF family [Enterococcus faecalis 599]
gi|424678504|ref|ZP_18115343.1| RNAse H domain protein, YqgF family [Enterococcus faecalis ERV103]
gi|424681944|ref|ZP_18118728.1| RNAse H domain protein, YqgF family [Enterococcus faecalis ERV116]
gi|424683206|ref|ZP_18119959.1| RNAse H domain protein, YqgF family [Enterococcus faecalis ERV129]
gi|424687208|ref|ZP_18123858.1| RNAse H domain protein, YqgF family [Enterococcus faecalis ERV25]
gi|424692066|ref|ZP_18128580.1| RNAse H domain protein, YqgF family [Enterococcus faecalis ERV31]
gi|424693200|ref|ZP_18129646.1| RNAse H domain protein, YqgF family [Enterococcus faecalis ERV37]
gi|424697456|ref|ZP_18133783.1| RNAse H domain protein, YqgF family [Enterococcus faecalis ERV41]
gi|424700720|ref|ZP_18136903.1| RNAse H domain protein, YqgF family [Enterococcus faecalis ERV62]
gi|424703592|ref|ZP_18139725.1| RNAse H domain protein, YqgF family [Enterococcus faecalis ERV63]
gi|424712228|ref|ZP_18144420.1| RNAse H domain protein, YqgF family [Enterococcus faecalis ERV65]
gi|424718397|ref|ZP_18147646.1| RNAse H domain protein, YqgF family [Enterococcus faecalis ERV68]
gi|424721273|ref|ZP_18150367.1| RNAse H domain protein, YqgF family [Enterococcus faecalis ERV72]
gi|424725875|ref|ZP_18154564.1| RNAse H domain protein, YqgF family [Enterococcus faecalis ERV73]
gi|424730260|ref|ZP_18158857.1| RNAse H domain protein, YqgF family [Enterococcus faecalis ERV81]
gi|424739641|ref|ZP_18168058.1| RNAse H domain protein, YqgF family [Enterococcus faecalis ERV85]
gi|424750064|ref|ZP_18178135.1| RNAse H domain protein, YqgF family [Enterococcus faecalis ERV93]
gi|424756174|ref|ZP_18184008.1| RNAse H domain protein, YqgF family [Enterococcus faecalis R508]
gi|62901023|sp|Q836B2.1|RUVX_ENTFA RecName: Full=Putative Holliday junction resolvase
gi|29343239|gb|AAO81002.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
V583]
gi|227074135|gb|EEI12098.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
TX0104]
gi|227177878|gb|EEI58850.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
HH22]
gi|229304571|gb|EEN70567.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
ATCC 29200]
gi|229308643|gb|EEN74630.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
TX1322]
gi|255964098|gb|EET96574.1| conserved hypothetical protein [Enterococcus faecalis T1]
gi|255968991|gb|EET99613.1| conserved hypothetical protein [Enterococcus faecalis T2]
gi|256598313|gb|EEU17489.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
gi|256683457|gb|EEU23152.1| conserved hypothetical protein [Enterococcus faecalis T3]
gi|256711310|gb|EEU26348.1| conserved hypothetical protein [Enterococcus faecalis T8]
gi|256949191|gb|EEU65823.1| conserved hypothetical protein [Enterococcus faecalis DS5]
gi|256952703|gb|EEU69335.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
gi|256955893|gb|EEU72525.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
gi|256985981|gb|EEU73283.1| conserved hypothetical protein [Enterococcus faecalis JH1]
gi|256990870|gb|EEU78172.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
gi|256993568|gb|EEU80870.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
gi|256994586|gb|EEU81888.1| conserved hypothetical protein [Enterococcus faecalis D6]
gi|256998425|gb|EEU84945.1| conserved hypothetical protein [Enterococcus faecalis CH188]
gi|257157648|gb|EEU87608.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
gi|257160857|gb|EEU90817.1| conserved hypothetical protein [Enterococcus faecalis T11]
gi|257164710|gb|EEU94670.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|291079412|gb|EFE16776.1| putative Holliday junction resolvase [Enterococcus faecalis R712]
gi|291082943|gb|EFE19906.1| putative Holliday junction resolvase [Enterococcus faecalis S613]
gi|294451796|gb|EFG20248.1| RNAse YqgF [Enterococcus faecalis PC1.1]
gi|300850745|gb|EFK78494.1| RNAse YqgF [Enterococcus faecalis TUSoD Ef11]
gi|306497840|gb|EFM67372.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0411]
gi|306500571|gb|EFM69902.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0109]
gi|306504147|gb|EFM73359.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0860]
gi|306508867|gb|EFM77954.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX2134]
gi|306509847|gb|EFM78873.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0855]
gi|306514996|gb|EFM83542.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX4248]
gi|310626206|gb|EFQ09489.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
DAPTO 512]
gi|310630990|gb|EFQ14273.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0102]
gi|310632674|gb|EFQ15957.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0635]
gi|311289755|gb|EFQ68311.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
DAPTO 516]
gi|311293180|gb|EFQ71736.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0470]
gi|315027757|gb|EFT39689.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX2137]
gi|315029152|gb|EFT41084.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX4000]
gi|315031532|gb|EFT43464.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0017]
gi|315035052|gb|EFT46984.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0027]
gi|315145514|gb|EFT89530.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX2141]
gi|315147685|gb|EFT91701.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX4244]
gi|315151387|gb|EFT95403.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0012]
gi|315154072|gb|EFT98088.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0031]
gi|315157359|gb|EFU01376.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0043]
gi|315158422|gb|EFU02439.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0312]
gi|315162577|gb|EFU06594.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0645]
gi|315165420|gb|EFU09437.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX1302]
gi|315166586|gb|EFU10603.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX1341]
gi|315575738|gb|EFU87929.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0309B]
gi|315578303|gb|EFU90494.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0630]
gi|315579818|gb|EFU92009.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0309A]
gi|327534828|gb|AEA93662.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
OG1RF]
gi|329576586|gb|EGG58091.1| RNAse H domain protein, YqgF family [Enterococcus faecalis TX1467]
gi|397336223|gb|AFO43895.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
D32]
gi|402350077|gb|EJU84990.1| RNAse H domain protein, YqgF family [Enterococcus faecalis ERV116]
gi|402351482|gb|EJU86366.1| RNAse H domain protein, YqgF family [Enterococcus faecalis ERV103]
gi|402358472|gb|EJU93140.1| RNAse H domain protein, YqgF family [Enterococcus faecalis 599]
gi|402360591|gb|EJU95187.1| RNAse H domain protein, YqgF family [Enterococcus faecalis ERV31]
gi|402365589|gb|EJV00009.1| RNAse H domain protein, YqgF family [Enterococcus faecalis ERV25]
gi|402365703|gb|EJV00121.1| RNAse H domain protein, YqgF family [Enterococcus faecalis ERV129]
gi|402373452|gb|EJV07529.1| RNAse H domain protein, YqgF family [Enterococcus faecalis ERV62]
gi|402375100|gb|EJV09101.1| RNAse H domain protein, YqgF family [Enterococcus faecalis ERV37]
gi|402376006|gb|EJV09976.1| RNAse H domain protein, YqgF family [Enterococcus faecalis ERV41]
gi|402381264|gb|EJV14973.1| RNAse H domain protein, YqgF family [Enterococcus faecalis ERV65]
gi|402381952|gb|EJV15645.1| RNAse H domain protein, YqgF family [Enterococcus faecalis ERV68]
gi|402384467|gb|EJV18019.1| RNAse H domain protein, YqgF family [Enterococcus faecalis ERV63]
gi|402390388|gb|EJV23738.1| RNAse H domain protein, YqgF family [Enterococcus faecalis ERV73]
gi|402391943|gb|EJV25221.1| RNAse H domain protein, YqgF family [Enterococcus faecalis ERV72]
gi|402393753|gb|EJV26966.1| RNAse H domain protein, YqgF family [Enterococcus faecalis ERV81]
gi|402402912|gb|EJV35608.1| RNAse H domain protein, YqgF family [Enterococcus faecalis ERV85]
gi|402407027|gb|EJV39566.1| RNAse H domain protein, YqgF family [Enterococcus faecalis ERV93]
gi|402408681|gb|EJV41139.1| RNAse H domain protein, YqgF family [Enterococcus faecalis R508]
Length = 140
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 3/141 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG + VG+++SD A + ++ + + E L+ E+ + F+VG
Sbjct: 2 RIMGLDVGSRTVGVAVSDLLGWTAQGIEIIRINEEEENFGFERLGELVKEYEVTKFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + + + D ++L + Y +E T+ E L+ D + K
Sbjct: 62 PKNMNNSIGPRAEASMAYGD--KIQELFQLPVDYQDERLTTVQAERFLVEQADASRAKRK 119
Query: 142 TILDKFAAVGILQEYLDNANR 162
++DK AAV ILQ YLD +R
Sbjct: 120 KVIDKLAAVMILQNYLDAHSR 140
>gi|81428003|ref|YP_395002.1| Holliday junction resolvase-like protein [Lactobacillus sakei
subsp. sakei 23K]
gi|146325576|sp|Q38YN7.1|RUVX_LACSS RecName: Full=Putative Holliday junction resolvase
gi|78609644|emb|CAI54690.1| Hypothetical protein LCA_0389 [Lactobacillus sakei subsp. sakei
23K]
Length = 147
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 2/137 (1%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +G DVG + VG+++SD A + ++ ++ + + + L+++ + GF++G
Sbjct: 2 RLMGFDVGSRTVGIAVSDLFGWTAQGVEIIRINEDESEFGLDRVKELVAQHQVTGFVLGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N N+ VK T+ ++ Y +E T+ E +L+ D + K
Sbjct: 62 PKN-MNNSIGPRAVKAQEYGAMLTELFPEIPVDYIDERLTTVQAERMLVEQADTSRKKRK 120
Query: 142 TILDKFAAVGILQEYLD 158
++DK AAV ILQ YLD
Sbjct: 121 QVIDKLAAVMILQNYLD 137
>gi|406837048|ref|ZP_11096642.1| Holliday junction resolvase-like protein [Lactobacillus vini DSM
20605]
Length = 146
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG+++SD A + ++ ++ E ++L ++ + GF++G
Sbjct: 4 RLMGLDVGSKTVGVAVSDLLGWTAQGVEIIPIDEDNQQFGLERIKTLAKKYQIGGFVIGL 63
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTS-KGVELLLNPLDLHPVEYK 141
P N V+ +L KK + + +E T+ + +L+ D + K
Sbjct: 64 PKNMNNTEGPRVEAAKIYGEL--LKKEIGLPIDFQDERLTTVEAQRMLIEQADTSRRKRK 121
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 122 KVIDKVAAGLILQSYLD 138
>gi|261217214|ref|ZP_05931495.1| conserved hypothetical protein [Brucella ceti M13/05/1]
gi|261320085|ref|ZP_05959282.1| conserved hypothetical protein [Brucella ceti M644/93/1]
gi|260922303|gb|EEX88871.1| conserved hypothetical protein [Brucella ceti M13/05/1]
gi|261292775|gb|EEX96271.1| conserved hypothetical protein [Brucella ceti M644/93/1]
Length = 162
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 6/134 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+G K +GL++SD A P V+ R K TID A+ + + ++G P N
Sbjct: 21 GLDLGTKTIGLAVSDLGLSFAYPRPVIKRVKFTID--AQVLLKALETDKVGVIVIGLPMN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
A VQ + F+ + + L D+ + +W+E ++ E L +D+ + +
Sbjct: 79 MDGTAGPRVQATRAFVRTM---QPLTDLPFVFWDERLSTVAAERALIGMDVSRGKRADRI 135
Query: 145 DKFAAVGILQEYLD 158
D AA ILQ LD
Sbjct: 136 DSAAAAFILQGALD 149
>gi|82751216|ref|YP_416957.1| Holliday junction resolvase-like protein [Staphylococcus aureus
RF122]
gi|146325611|sp|Q2YT62.1|RUVX_STAAB RecName: Full=Putative Holliday junction resolvase
gi|82656747|emb|CAI81176.1| probable Holliday junction resolvase [Staphylococcus aureus RF122]
Length = 142
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 67/144 (46%), Gaps = 15/144 (10%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
+ LGLDVG + VG++ISD A L L + +L + +I + N+ ++G
Sbjct: 5 KILGLDVGSRTVGIAISDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVGTVVIGL 64
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAY-------WNEGFTSKGVELLLNPLDL 135
P N + F + S T K E + AY W+E ++ E L D+
Sbjct: 65 PKNMNNSIG-------FRGEASLTYK-EKLLEAYPSIEIVMWDERLSTMAAERSLLEADV 116
Query: 136 HPVEYKTILDKFAAVGILQEYLDN 159
+ K ++DK AAV ILQ YLD+
Sbjct: 117 SRQKRKQLIDKMAAVFILQGYLDS 140
>gi|414078175|ref|YP_006997493.1| Holliday junction resolvase YqgF [Anabaena sp. 90]
gi|413971591|gb|AFW95680.1| Holliday junction resolvase YqgF [Anabaena sp. 90]
Length = 158
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 6/142 (4%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
LG+DVG K +GL+ D IA+ ++ + RK D+ E + +++E ++ +VG P+
Sbjct: 14 LGVDVGSKRIGLAGCDGTGLIATGITTIERKSFVEDV--EKIQQIVNERQVQILVVGLPY 71
Query: 85 NRQQNAA-DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143
+ A V+ F L+ KL Y +E TS E L+ + P K +
Sbjct: 72 SMDGTIGFQARHVQKFAARLADALKL---PLEYMDERLTSYQAEQLIIAENRSPSRNKGL 128
Query: 144 LDKFAAVGILQEYLDNANRKVN 165
+D+ AA ILQ++LD V
Sbjct: 129 IDRKAAALILQQWLDARRSSVQ 150
>gi|452752204|ref|ZP_21951948.1| Putative Holliday junction resolvase [alpha proteobacterium
JLT2015]
gi|451960724|gb|EMD83136.1| Putative Holliday junction resolvase [alpha proteobacterium
JLT2015]
Length = 155
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 68/152 (44%), Gaps = 6/152 (3%)
Query: 12 QMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLIS 71
+ + ++ RG GLD G K +G++ SD + A P SVL R K T D R ++
Sbjct: 4 EQFRARLPDRGILCGLDFGTKRIGMAFSDSDWQFAGPDSVLKRTKQTADFAVLSERLVMR 63
Query: 72 EFNLEGFIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLL 130
+ +G ++G P N + A Q V+ F L A L M W+E TS+ + +
Sbjct: 64 Q--AKGIVLGMPLNMDGSGGPAAQRVRAFGRALEAAFPLPVM---LWDERLTSEAAQEAM 118
Query: 131 NPLDLHPVEYKTILDKFAAVGILQEYLDNANR 162
+ + +D AA IL+ ++ R
Sbjct: 119 AEAGVPRARWPEKIDAHAAALILRGAMEALTR 150
>gi|260428035|ref|ZP_05782014.1| conserved hypothetical protein [Citreicella sp. SE45]
gi|260422527|gb|EEX15778.1| conserved hypothetical protein [Citreicella sp. SE45]
Length = 157
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 6/135 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+G K +G+++SD +A+PL + RKK T D A ++ + + G ++G P N
Sbjct: 21 GLDLGTKTIGVALSDRLLTVATPLETVKRKKFTQD--AARLVEILRQREIAGVVLGLPRN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
+ Q + F + S +L D +W+E ++ E L D + ++
Sbjct: 79 MDGSEGPRCQSTRAFARNFS---QLWDGPITFWDERLSTVAAERALLEADTSRRKRAELI 135
Query: 145 DKFAAVGILQEYLDN 159
D AA ILQ LD
Sbjct: 136 DHVAASYILQGVLDR 150
>gi|428222036|ref|YP_007106206.1| RNAse H-fold protein YqgF [Synechococcus sp. PCC 7502]
gi|427995376|gb|AFY74071.1| RNAse H-fold protein YqgF [Synechococcus sp. PCC 7502]
Length = 140
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 70/135 (51%), Gaps = 6/135 (4%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
LGLDVG K +G++ D IA ++ + RK D MAE + L+ E + +VG P+
Sbjct: 6 LGLDVGRKRIGVAGCDRTGLIAHGITTIFRKSWQQD-MAE-LQQLVIEREVNILVVGLPY 63
Query: 85 NRQQNAA-DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143
N + A V+ F SA K LE + + +E TS E ++ + P + K +
Sbjct: 64 NMDGSIGYQAKHVQKFA--YSAAKHLE-LDLEFMDERLTSFEAEQMMMNSGISPRDNKAL 120
Query: 144 LDKFAAVGILQEYLD 158
+D+ AA ILQ++L+
Sbjct: 121 IDRKAAALILQQWLE 135
>gi|339481106|ref|ZP_08656765.1| Holliday junction resolvase-like protein [Leuconostoc
pseudomesenteroides KCTC 3652]
Length = 143
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 72/144 (50%), Gaps = 4/144 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG + VG+++SDP A + ++ ++ E +I E ++G ++G
Sbjct: 2 RLLGLDVGSRTVGVAVSDPMGWTAQGVEIIRINEDEKQFGLERLAEIIKEKQVKGVVLGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N N ++ + + ++ ++ + +E T+ E +L+ D+ + K
Sbjct: 62 PKN--MNNSEGPRAEAARQYAKMVEEHFNLPTDFQDERLTTVQAERMLIEEADVSRKKRK 119
Query: 142 TILDKFAAVGILQEYLDNANRKVN 165
++DK AA ILQ YLD AN K+
Sbjct: 120 QVIDKIAAEFILQNYLD-ANGKLT 142
>gi|330994858|ref|ZP_08318780.1| Putative Holliday junction resolvase [Gluconacetobacter sp. SXCC-1]
gi|329758119|gb|EGG74641.1| Putative Holliday junction resolvase [Gluconacetobacter sp. SXCC-1]
Length = 246
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 7/138 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLD G K +G+++SD +ASP + L R K +++ A ++ ++ G +VG
Sbjct: 101 RLLGLDPGRKTIGVALSDVGLMLASPHTGLKRAKLSVN--AAQISTIARAQDVGGLVVGL 158
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGV-ELLLNPLDLHPVEY 140
P + + A Q + + +LS +L + A W+E +S V L+ D+
Sbjct: 159 PLSLDGSFGPAAQAARDWTLNLS---ELTGLPAAMWDERLSSSAVNRFLIAEADMTRQRR 215
Query: 141 KTILDKFAAVGILQEYLD 158
++D+ AA ILQ LD
Sbjct: 216 GAVVDQMAAAYILQAALD 233
>gi|423712623|ref|ZP_17686923.1| RNAse H-fold protein YqgF [Bartonella washoensis Sb944nv]
gi|395411416|gb|EJF77938.1| RNAse H-fold protein YqgF [Bartonella washoensis Sb944nv]
Length = 159
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 70/137 (51%), Gaps = 12/137 (8%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEG---FIVGY 82
GLD+G K +G+++SD +++P SVL RKK +D R+LI F+ E I+G
Sbjct: 21 GLDLGTKTIGIAVSDRGLFLSNPRSVLQRKKFMLDA-----RTLIQIFDRENVGVVIIGL 75
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N ++ Q + F+ ++ A ++ + +W+E ++ E L +++ +
Sbjct: 76 PLNMNGSSGPRAQATRTFVSNMEA---YTEIPFVFWDERLSTIAAERSLLEMNISRAKRA 132
Query: 142 TILDKFAAVGILQEYLD 158
+D AA ILQ L+
Sbjct: 133 NRIDSAAAAFILQGALN 149
>gi|289765899|ref|ZP_06525277.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
D11]
gi|289717454|gb|EFD81466.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
D11]
Length = 147
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 74/138 (53%), Gaps = 7/138 (5%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R++ LD+GD +G++ SD IASPL + RKK A+ + E + +VG
Sbjct: 3 RYIALDIGDVRIGVAKSDIMGIIASPLETINRKKVK---SAKRIAEICKENDTNLIVVGI 59
Query: 83 PFNRQ-QNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH-PVEY 140
P + + A +V+ +I L K++E+++ +E F++ + +L L+ + +E
Sbjct: 60 PKSLDGEEKRQAEKVREYIKKLK--KEIENLEIIEVDERFSTVIADNILKELNKNGAIEK 117
Query: 141 KTILDKFAAVGILQEYLD 158
+ ++DK AA ILQ YLD
Sbjct: 118 RKVVDKVAASIILQTYLD 135
>gi|434407856|ref|YP_007150741.1| RNAse H-fold protein YqgF [Cylindrospermum stagnale PCC 7417]
gi|428262111|gb|AFZ28061.1| RNAse H-fold protein YqgF [Cylindrospermum stagnale PCC 7417]
Length = 158
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 6/136 (4%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
LGLDVG K +G++ D IA+ ++ + R+ D+ E F+ ++ + ++ +VG P+
Sbjct: 14 LGLDVGSKRIGVAGCDGTGLIATGITTIERRSLNQDV--EQFQQIVRDRQVQVLVVGLPY 71
Query: 85 NRQQNAA-DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143
+ + A V+ F L+ KL Y +E TS E LL + P K +
Sbjct: 72 SMDGSLGFQARYVQKFATRLAQALKL---PVEYVDERLTSFQAEQLLIAENRSPSRNKGL 128
Query: 144 LDKFAAVGILQEYLDN 159
+D+ AA ILQ++LD
Sbjct: 129 IDRKAAALILQQWLDT 144
>gi|399064857|ref|ZP_10747649.1| RNAse H-fold protein YqgF [Novosphingobium sp. AP12]
gi|398030306|gb|EJL23725.1| RNAse H-fold protein YqgF [Novosphingobium sp. AP12]
Length = 169
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 11/142 (7%)
Query: 20 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTID--LMAEDFRSLISEFNLEG 77
+RG +GLD+G + +G + +D +IASP L R K D LM E LI E +++G
Sbjct: 29 ERGGLMGLDLGTQTIGTAFADAGWRIASPGKTLKRGKFGADKALMQE----LIRERSIKG 84
Query: 78 FIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH 136
++G P N + Q + + +L+ + + W+E +++ E L D+
Sbjct: 85 IVIGLPLNMDGSEGPRAQSSRAYARNLA----VLGLPILLWDERWSTTSAERGLIDQDMS 140
Query: 137 PVEYKTILDKFAAVGILQEYLD 158
+ T +D AA ILQ +D
Sbjct: 141 RAKRATRIDSAAAAVILQGAVD 162
>gi|366088421|ref|ZP_09454906.1| Holliday junction resolvase-like protein [Lactobacillus zeae KCTC
3804]
Length = 144
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 3/137 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG + VG++ISDP A L ++ ++ + L+ ++ + F++G
Sbjct: 2 RLMGLDVGSRTVGVAISDPLGWTAQGLEIIRINEDKQQFGIARLKELVKQYEVTAFVLGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTS-KGVELLLNPLDLHPVEYK 141
P N + + DL K+ + + +E T+ + +L+ D K
Sbjct: 62 PKNMNNSIGPRAEKSQAYGDL--LKETFGLPVDFIDERLTTVEASRMLIEEADASRKRQK 119
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 120 QVIDKVAAQMILQNYLD 136
>gi|291301347|ref|YP_003512625.1| Holliday junction resolvase YqgF [Stackebrandtia nassauensis DSM
44728]
gi|290570567|gb|ADD43532.1| Holliday junction resolvase YqgF [Stackebrandtia nassauensis DSM
44728]
Length = 151
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 72/142 (50%), Gaps = 6/142 (4%)
Query: 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFR---SLISEFNLEG 77
RGR LG+DVG VG+++SDP +A+PL + R + + D L++E ++
Sbjct: 7 RGRRLGVDVGKVRVGVALSDPDGILAAPLETVPRDMSGKSVPPADISRIADLVNEHSVVE 66
Query: 78 FIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH 136
++G P + + A + + + + ++A + D+ + +E T+ L+ +
Sbjct: 67 IVIGLPVTLSGEESYAAAESRAYAEQVTAA--VGDVPVRFVDERLTTAVASRRLSERGVK 124
Query: 137 PVEYKTILDKFAAVGILQEYLD 158
K ++D+ AAV ILQ +L+
Sbjct: 125 GKRRKAVVDQAAAVEILQLWLE 146
>gi|453382552|dbj|GAC82847.1| putative Holliday junction resolvase [Gordonia paraffinivorans NBRC
108238]
Length = 154
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 68/134 (50%), Gaps = 6/134 (4%)
Query: 27 LDVGDKYVGLSISDPKNKIASPLSVLLRK-KNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
+DVG +G+++ DP +A+P+ + R T DL E L+ E+ G +VG P
Sbjct: 22 IDVGSVRIGVAVCDPDGILATPVETVRRTPSGTADL--ERIAELVDEYEAIGVVVGLPKT 79
Query: 86 RQQNAADAVQV-KLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
+ A A + + F + L+ +++ ++ + +E FT+ + L+ + ++
Sbjct: 80 LKNTAGVAAETARGFGERLA--ERIAPVEVHWQDERFTTVTAQQALHASGRSVKSSRGVI 137
Query: 145 DKFAAVGILQEYLD 158
D+ AAV ILQ +LD
Sbjct: 138 DQAAAVAILQGWLD 151
>gi|331701290|ref|YP_004398249.1| Holliday junction resolvase [Lactobacillus buchneri NRRL B-30929]
gi|329128633|gb|AEB73186.1| Holliday junction resolvase [Lactobacillus buchneri NRRL B-30929]
Length = 144
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 15/143 (10%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K VG+++SD + + ++ ++ + + L+ ++ ++GF+VG
Sbjct: 2 RLMGLDVGSKTVGVAVSDQLGWTSQGVEIIRIDEDNKEFGLDRVSELVKKYQVDGFVVGL 61
Query: 83 PFNRQQN---AADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTS-KGVELLLNPLDL 135
P N + A+A Q K+LED + + +E T+ + +L D+
Sbjct: 62 PKNMNNSLGPRAEASQ--------QYGKRLEDKFNLPVDFEDERLTTVEAQRMLTEEADV 113
Query: 136 HPVEYKTILDKFAAVGILQEYLD 158
+ K ++DK AA ILQ YLD
Sbjct: 114 SRAKRKKVIDKLAAGLILQNYLD 136
>gi|269216087|ref|ZP_06159941.1| putative Holliday junction resolvase [Slackia exigua ATCC 700122]
gi|269130346|gb|EEZ61424.1| putative Holliday junction resolvase [Slackia exigua ATCC 700122]
Length = 171
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 6/138 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R++ LD+GD +G++ISDP ++ASPL VL + A FR L+ ++ + + G
Sbjct: 20 RYMALDIGDARIGIAISDPAGRVASPLKVL--PAAEVLGHAASFRMLVEDWMPDALVCGL 77
Query: 83 PFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
PF + A +K ++ K D+ + +E +S + L +
Sbjct: 78 PFTLAGEQGPQAASLKERAQRIA---KACDLPLYFSDERLSSSEAKRFLREGGYDERAMR 134
Query: 142 TILDKFAAVGILQEYLDN 159
+D AA LQ +LD+
Sbjct: 135 GKVDMIAASIFLQSWLDS 152
>gi|229918437|ref|YP_002887083.1| Holliday junction resolvase YqgF [Exiguobacterium sp. AT1b]
gi|229469866|gb|ACQ71638.1| Holliday junction resolvase YqgF [Exiguobacterium sp. AT1b]
Length = 140
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 4/141 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG K +G+++SD A + + + D R I +++++ +VG+
Sbjct: 3 RVMGLDVGSKTIGVAVSDLMGWTAQGVETVYWTEPDFDEAVRLLRPFIEQYDVKEVVVGH 62
Query: 83 PFNRQQNAADAVQV-KLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + + F + + L +E T+ E +L D+ + K
Sbjct: 63 PKNMNGTVGPRGEASEAFAEAFTEQTGL---PCVLVDERLTTMQAERMLISADVSRKKRK 119
Query: 142 TILDKFAAVGILQEYLDNANR 162
++DK AAV ILQ YLD + +
Sbjct: 120 AVIDKMAAVMILQNYLDRSGK 140
>gi|395786265|ref|ZP_10465992.1| RNAse H-fold protein YqgF [Bartonella tamiae Th239]
gi|423716842|ref|ZP_17691032.1| RNAse H-fold protein YqgF [Bartonella tamiae Th307]
gi|395422563|gb|EJF88759.1| RNAse H-fold protein YqgF [Bartonella tamiae Th239]
gi|395428916|gb|EJF94991.1| RNAse H-fold protein YqgF [Bartonella tamiae Th307]
Length = 158
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 68/134 (50%), Gaps = 6/134 (4%)
Query: 26 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85
GLD+G K +G++ISD A P VL RKK +ID A + + N+ ++G P N
Sbjct: 21 GLDLGTKTIGIAISDLCWSFAHPRPVLKRKKFSID--APLLNQRLFKENVGVIVIGLPIN 78
Query: 86 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 144
+ VQ + F+ ++++ + ++ + +W+E ++ E L +++ + +
Sbjct: 79 MNGSNGPRVQATRTFVSNMNS---ITNIPFVFWDERLSTVAAERSLLEMNVSRAKRSEKI 135
Query: 145 DKFAAVGILQEYLD 158
D AA ILQ LD
Sbjct: 136 DSAAAAFILQGALD 149
>gi|422701455|ref|ZP_16759295.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX1342]
gi|315169885|gb|EFU13902.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX1342]
Length = 140
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 3/141 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLDVG + VG+++SD A + ++ + + E L+ E+ + F+VG
Sbjct: 2 RIMGLDVGSRTVGVAVSDLLGWTAQGIEIIRINEEEENFGFERLGELVKEYEVTKFVVGL 61
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 141
P N + + + D ++L + Y +E T+ E L+ D + K
Sbjct: 62 PKNMNNSIGPRAEASIAYGD--KIQELFQLPVDYQDERLTTVQAERFLVEQADASRAKRK 119
Query: 142 TILDKFAAVGILQEYLDNANR 162
++DK AAV ILQ YLD +R
Sbjct: 120 KVIDKLAAVMILQNYLDAHSR 140
>gi|365840307|ref|ZP_09381505.1| RNAse H domain protein, YqgF family [Anaeroglobus geminatus F0357]
gi|364561883|gb|EHM39759.1| RNAse H domain protein, YqgF family [Anaeroglobus geminatus F0357]
Length = 141
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 5/137 (3%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R LGLDVG+K +G++ SD A + + R+ D ++ E + +VG
Sbjct: 2 RILGLDVGEKTIGVACSDALLMTAQAVGTIKRQSKKKDFA--QLAAVCREREVHCIVVGK 59
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P + ++ ++ ++ F+ +L D+ YW+E T+ L + + K
Sbjct: 60 PSHMNGERSENMEKIERFVSELKEAVPEPDI--VYWDERLTTAMARRQLIAAGVRREKRK 117
Query: 142 TILDKFAAVGILQEYLD 158
++D AAV ILQ YLD
Sbjct: 118 GVIDTIAAVFILQNYLD 134
>gi|163852734|ref|YP_001640777.1| Holliday junction resolvase YqgF [Methylobacterium extorquens PA1]
gi|163664339|gb|ABY31706.1| Holliday junction resolvase YqgF [Methylobacterium extorquens PA1]
Length = 160
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 6/137 (4%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R +GLD+G K +G+++SD +IASPL + R K T D+ SL + + G ++G
Sbjct: 13 RLIGLDLGTKTIGIALSDVGRQIASPLETIRRVKFTPDV--ARIVSLCATHAVGGLVIGL 70
Query: 83 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + Q + F +L + +++E ++ V L D
Sbjct: 71 PLNMDGSEGPRAQSSRSFARNLKPLLP---LPVLFFDERLSTAAVTRTLIEADASRARRG 127
Query: 142 TILDKFAAVGILQEYLD 158
++DK AA ILQ LD
Sbjct: 128 ELVDKLAAAYILQSCLD 144
>gi|304391702|ref|ZP_07373644.1| putative Holliday junction resolvase [Ahrensia sp. R2A130]
gi|303295931|gb|EFL90289.1| putative Holliday junction resolvase [Ahrensia sp. R2A130]
Length = 160
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 6/138 (4%)
Query: 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 81
GR LG+D+G K +GL+ISD I+SP+ + R K T D+ A + + G ++G
Sbjct: 20 GRLLGIDLGTKTIGLAISDENWAISSPVRTIKRTKFTPDVQA--MLEFATAERVSGIVIG 77
Query: 82 YPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 140
P N + Q + F +LS +L ++ W+E ++ ++ ++
Sbjct: 78 LPLNMDGSEGPRAQSSRAFARNLS---RLTELPIQLWDESLSTSEALEGVSAKKAAQMKA 134
Query: 141 KTILDKFAAVGILQEYLD 158
LD AA ILQ D
Sbjct: 135 DGKLDALAASLILQGCCD 152
>gi|126657653|ref|ZP_01728808.1| Holliday junction resolvase-like protein [Cyanothece sp. CCY0110]
gi|126621109|gb|EAZ91823.1| Holliday junction resolvase-like protein [Cyanothece sp. CCY0110]
Length = 143
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 74/143 (51%), Gaps = 8/143 (5%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
LGLDVG K +G++ D IA+ L+ + R+ D+ + ++L++E + ++G P+
Sbjct: 7 LGLDVGKKRIGVAGCDGTGLIATGLTTIERQSFPQDV--QQLQTLVTEREAQLLVIGLPY 64
Query: 85 NRQQNAA-DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143
+ + A QV+ F +S K LE + Y +E TS E L + K +
Sbjct: 65 SMDGSIGFQAKQVQKFAKRIS--KALE-LPVEYIDERLTSVEAETKLKAQKKYSRHNKGL 121
Query: 144 LDKFAAVGILQEYLDNANRKVNL 166
+D+ AA ILQ++LD R+ +L
Sbjct: 122 VDRLAATIILQQWLD--QRRASL 142
>gi|224476714|ref|YP_002634320.1| Holliday junction resolvase-like protein [Staphylococcus carnosus
subsp. carnosus TM300]
gi|254767525|sp|B9DNH1.1|RUVX_STACT RecName: Full=Putative Holliday junction resolvase
gi|222421321|emb|CAL28135.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 142
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 3/138 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
+ +GLDVG K VG+++SD A L L + +L +I + + + ++G
Sbjct: 5 KIIGLDVGSKTVGVAVSDLMGWTAQGLDTLRINEEENELGITKLAEIIKKEDADTVVIGL 64
Query: 83 PFNRQQNAADAVQVKL-FIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 141
P N + + L + ++L K L D+ W+E ++ E L D+ + K
Sbjct: 65 PKNMNNSIGFRGEASLKYKEEL--LKILPDINVVMWDERLSTMAAERSLLEADVSRSKRK 122
Query: 142 TILDKFAAVGILQEYLDN 159
++DK AAV ILQ YLD+
Sbjct: 123 KVIDKMAAVFILQGYLDS 140
>gi|424779897|ref|ZP_18206783.1| Putative Holliday junction resolvase [Catellicoccus marimammalium
M35/04/3]
gi|422843436|gb|EKU27873.1| Putative Holliday junction resolvase [Catellicoccus marimammalium
M35/04/3]
Length = 137
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 69/135 (51%), Gaps = 3/135 (2%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
+GLDVG K VG+++SDP A + ++ + + ++L+ E+ ++ F+VG P
Sbjct: 1 MGLDVGSKTVGIAVSDPLGWTAQGVEIIPIDEEKGYFGYDRVKALVKEYQVQAFVVGLPK 60
Query: 85 NRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYKTI 143
+ + D + + + ++ + Y +E T+ E +L+ ++ + K +
Sbjct: 61 HMNNSLGDRAEAAIRYGE--HLEQRFGLPVYYQDERLTTVEAERMLIEEGNVSRKKRKQV 118
Query: 144 LDKFAAVGILQEYLD 158
+DK AAV ILQ YLD
Sbjct: 119 IDKLAAVMILQNYLD 133
>gi|417896886|ref|ZP_12540829.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21235]
gi|418950230|ref|ZP_13502422.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus IS-160]
gi|341840152|gb|EGS81672.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21235]
gi|375377468|gb|EHS80935.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus IS-160]
Length = 142
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 67/144 (46%), Gaps = 15/144 (10%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
+ LGLDVG + VG++ISD A L L + +L + +I + N+ ++G
Sbjct: 5 KILGLDVGSRTVGIAISDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKNNVGTVVIGL 64
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAY-------WNEGFTSKGVELLLNPLDL 135
P N + F + S T K E + AY W+E ++ E L D+
Sbjct: 65 PKNMNNSIG-------FRGEASLTYK-EKLLEAYPSIEIVMWDERLSTMAAERSLLEADV 116
Query: 136 HPVEYKTILDKFAAVGILQEYLDN 159
+ K ++DK AAV ILQ YLD+
Sbjct: 117 SRQKRKQVIDKMAAVFILQGYLDS 140
>gi|419481242|ref|ZP_14021038.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA40563]
gi|379582649|gb|EHZ47527.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA40563]
Length = 134
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 9/136 (6%)
Query: 27 LDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFNR 86
+DVG K VG++ISDP A L ++ + + + L+ + +E F+VG P N
Sbjct: 1 MDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRIKELVDTYKVERFVVGLPKNM 60
Query: 87 QQNAADAVQVKLFIDDLSATKKLED---MKYAYWNEGFTSKGVE-LLLNPLDLHPVEYKT 142
+ V+ + KLE+ + Y +E T+ E +L+ D+ + K
Sbjct: 61 NNTSGPRVEAS-----QAYGAKLEEFFGLPVDYQDERLTTVAAERMLIEQADISRNKRKK 115
Query: 143 ILDKFAAVGILQEYLD 158
++DK AA ILQ YLD
Sbjct: 116 VIDKLAAQLILQNYLD 131
>gi|434388360|ref|YP_007098971.1| RNAse H-fold protein YqgF [Chamaesiphon minutus PCC 6605]
gi|428019350|gb|AFY95444.1| RNAse H-fold protein YqgF [Chamaesiphon minutus PCC 6605]
Length = 140
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 70/142 (49%), Gaps = 8/142 (5%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
LGLDVG+K +G++ D IA+ ++ + R D+ +I+E +E ++G P+
Sbjct: 6 LGLDVGNKRIGVAGCDGLGSIATGITTIWRSSFQEDIA--QLAQIIAEREVEILVIGLPY 63
Query: 85 NRQ-QNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143
Q + A +V+ F ++A L Y +E TS E ++ ++ K
Sbjct: 64 TMDGQIGSQAKKVQKFARRVAAEIAL---PIEYVDERLTSYAAEQIMKDANISISRNKAT 120
Query: 144 LDKFAAVGILQEYLDNANRKVN 165
+D+ AA ILQ++L+ R VN
Sbjct: 121 IDRIAAAVILQQWLE--ERHVN 140
>gi|13470868|ref|NP_102437.1| hypothetical protein mlr0681 [Mesorhizobium loti MAFF303099]
gi|32130057|sp|Q98M90.1|RUVX_RHILO RecName: Full=Putative Holliday junction resolvase
gi|14021611|dbj|BAB48223.1| mlr0681 [Mesorhizobium loti MAFF303099]
Length = 166
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 7/139 (5%)
Query: 22 GRFL-GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV 80
GR L GLD+GDK +G+++SD A P V++R+K L A +L+ + N+ +
Sbjct: 8 GRTLAGLDLGDKTIGVAVSDRGFAFAHPRPVIMRRK--FSLDAAVLLALLKKENVGAVAI 65
Query: 81 GYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 139
G P N + Q + F+ +++ +L D+ + +W+E ++ E L +D +
Sbjct: 66 GLPINMDGSEGPRAQKSRAFVRNMA---QLSDLPFVFWDERLSTVAAERTLIEMDFSRAK 122
Query: 140 YKTILDKFAAVGILQEYLD 158
+D AA ILQ LD
Sbjct: 123 RAGKIDSAAAAFILQGVLD 141
>gi|300175399|emb|CBK20710.2| Holliday junction resolvase YqgF [Blastocystis hominis]
Length = 167
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 72/174 (41%), Gaps = 42/174 (24%)
Query: 12 QMLKRKVSK-RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLI 70
Q L KV+ R R LGLDVG +VG+++SDP +A P LLR + L+
Sbjct: 10 QSLYSKVAHIRPRLLGLDVGTTFVGVALSDPTLTLALPQGTLLRTDCLRPFKSNPLIKLV 69
Query: 71 SEFNLEGFIVGYP-FNRQQNAADAVQVKLFI----------------DDLSATK-KLEDM 112
++ F+VG P + + VKLFI D+ +T+ ++D
Sbjct: 70 QQYRTFAFVVGLPLLESGEESIQCEDVKLFIHEFWNHTEMPMPVVFEDEWGSTQMAMDDY 129
Query: 113 KYAY---WNEGFTSKGVELLLNPLDLHPVEYKTILDKFAAVGILQEYLDNANRK 163
+Y WN G K D+ AA ILQ +LD+ + K
Sbjct: 130 RYQKKRDWNRGLRKK--------------------DENAAAIILQSFLDSFDVK 163
>gi|282898802|ref|ZP_06306789.1| Holliday junction resolvase YqgF [Cylindrospermopsis raciborskii
CS-505]
gi|281196329|gb|EFA71239.1| Holliday junction resolvase YqgF [Cylindrospermopsis raciborskii
CS-505]
Length = 154
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 78/147 (53%), Gaps = 8/147 (5%)
Query: 25 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPF 84
LGLDVG K VG++ D IA+ ++ + RK DL ++ R L+ + ++ +VG P+
Sbjct: 13 LGLDVGSKRVGVAGCDGTGLIATGITTIQRKSFVEDL--QEIRGLVEKRRVQILVVGIPY 70
Query: 85 NRQQNAAD-AVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143
+ + + A +++ F + L+ K + + +E TS E +L + P K +
Sbjct: 71 SGDGSMGEQARRIQKFANRLA---KALGLPLEHVDERLTSFQAEQMLLAENRSPSYNKGL 127
Query: 144 LDKFAAVGILQEYLDNANRKVNLKANV 170
+D+ AA ILQ++LD +R++ N+
Sbjct: 128 VDRKAASIILQQWLD--DRRLRTPQNI 152
>gi|416125349|ref|ZP_11595947.1| conserved hypothetical protein [Staphylococcus epidermidis FRI909]
gi|319400946|gb|EFV89165.1| conserved hypothetical protein [Staphylococcus epidermidis FRI909]
Length = 142
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 69/151 (45%), Gaps = 15/151 (9%)
Query: 13 MLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISE 72
MLK K+ LGLDVG K VG++ISD A L L + DL + +I +
Sbjct: 1 MLKHKI------LGLDVGSKTVGIAISDLMGWTAQGLDTLRINEEQDDLGIDQLVKIIKD 54
Query: 73 FNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLED----MKYAYWNEGFTSKGVEL 128
+ ++G P N + + + +KL+D + W+E ++ E
Sbjct: 55 NQVGTVVIGLPKNMNNSIGFRGEAS-----IKYKEKLQDSVPSIDIVMWDERLSTMAAER 109
Query: 129 LLNPLDLHPVEYKTILDKFAAVGILQEYLDN 159
L D+ + K ++DK AAV ILQ YLD+
Sbjct: 110 SLLEADVSRQKRKKVIDKMAAVFILQGYLDS 140
>gi|221195852|ref|ZP_03568905.1| conserved hypothetical protein [Atopobium rimae ATCC 49626]
gi|221184326|gb|EEE16720.1| conserved hypothetical protein [Atopobium rimae ATCC 49626]
Length = 140
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 62/138 (44%), Gaps = 4/138 (2%)
Query: 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 82
R L LD+GD VG+++SDP +IASP+ VL + A FRS++ ++ E + G
Sbjct: 2 RVLALDIGDARVGIAVSDPDGRIASPVCVL--PAQEVFSHARSFRSVLEDWEPELLVCGK 59
Query: 83 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142
P + + Q + ++ + +E +S + +L L +
Sbjct: 60 PLT--LSGEEGPQAQKIMEQAKKIADRTGLPVELTDERLSSSEAKRILRAQGLSEKTMRG 117
Query: 143 ILDKFAAVGILQEYLDNA 160
+D AA LQ +LD +
Sbjct: 118 KVDMVAASLFLQAWLDRS 135
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.139 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,611,123,117
Number of Sequences: 23463169
Number of extensions: 103245470
Number of successful extensions: 255747
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 1305
Number of HSP's that attempted gapping in prelim test: 253004
Number of HSP's gapped (non-prelim): 2157
length of query: 176
length of database: 8,064,228,071
effective HSP length: 132
effective length of query: 44
effective length of database: 9,262,057,059
effective search space: 407530510596
effective search space used: 407530510596
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 71 (32.0 bits)