Query 030509
Match_columns 176
No_of_seqs 159 out of 1045
Neff 6.3
Searched_HMMs 29240
Date Tue Mar 26 00:09:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030509.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030509hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nu0_A Hypothetical protein YQ 100.0 3.9E-46 1.3E-50 287.5 9.3 134 21-159 2-136 (138)
2 1vhx_A Putative holliday junct 100.0 2E-41 6.8E-46 264.2 9.5 138 22-162 3-141 (150)
3 1iv0_A Hypothetical protein; r 100.0 9.6E-34 3.3E-38 206.7 8.6 97 22-124 1-98 (98)
4 4ep4_A Crossover junction endo 98.6 2.5E-07 8.4E-12 72.8 10.7 102 22-130 1-114 (166)
5 1hjr_A Holliday junction resol 98.1 3.5E-05 1.2E-09 59.9 12.0 93 22-117 1-101 (158)
6 3bzc_A TEX; helix-turn-helix, 97.8 0.00013 4.5E-09 69.2 11.5 105 12-125 320-427 (785)
7 3psf_A Transcription elongatio 97.5 0.0012 4E-08 64.4 12.8 95 22-122 519-625 (1030)
8 3psi_A Transcription elongatio 97.2 0.003 1E-07 62.5 12.8 95 22-122 516-622 (1219)
9 2gup_A ROK family protein; sug 95.4 0.049 1.7E-06 44.4 7.6 100 22-128 4-112 (292)
10 3vov_A Glucokinase, hexokinase 95.1 0.081 2.8E-06 43.7 8.1 104 22-130 1-118 (302)
11 2e2o_A Hexokinase; acetate and 94.6 0.23 7.9E-06 40.4 9.7 97 22-128 2-104 (299)
12 2ch5_A NAGK protein; transfera 94.6 0.17 5.9E-06 41.9 9.0 96 22-126 6-117 (347)
13 3epq_A Putative fructokinase; 94.3 0.15 5.3E-06 42.2 8.1 102 22-130 3-117 (302)
14 4htl_A Beta-glucoside kinase; 93.9 0.25 8.5E-06 40.6 8.5 104 22-130 4-117 (297)
15 3vgl_A Glucokinase; ROK family 93.8 0.2 7E-06 41.5 7.9 104 22-130 2-116 (321)
16 3mcp_A Glucokinase; structural 93.7 0.32 1.1E-05 41.8 9.2 108 19-130 6-128 (366)
17 1saz_A Probable butyrate kinas 93.6 0.4 1.4E-05 41.1 9.6 93 22-121 2-131 (381)
18 3djc_A Type III pantothenate k 93.4 0.69 2.4E-05 38.1 10.4 58 22-81 2-64 (266)
19 2qm1_A Glucokinase; alpha-beta 93.3 0.19 6.6E-06 41.2 6.8 105 22-130 6-128 (326)
20 2aa4_A Mannac kinase, putative 93.2 0.31 1.1E-05 39.3 7.8 103 23-130 2-116 (289)
21 3r6m_A YEAZ, resuscitation pro 93.0 1.5 5.1E-05 35.0 11.4 88 22-118 2-94 (213)
22 3lm2_A Putative kinase; struct 92.4 0.29 1E-05 39.3 6.5 61 20-85 4-65 (226)
23 2ap1_A Putative regulator prot 92.1 0.54 1.8E-05 38.7 8.0 104 21-129 23-139 (327)
24 2hoe_A N-acetylglucosamine kin 92.1 0.51 1.7E-05 40.0 8.0 106 21-130 86-208 (380)
25 4db3_A Glcnac kinase, N-acetyl 92.0 0.72 2.5E-05 38.3 8.7 103 22-129 24-139 (327)
26 3r8e_A Hypothetical sugar kina 91.7 0.28 9.5E-06 40.7 5.8 106 20-130 17-138 (321)
27 1z6r_A MLC protein; transcript 91.7 0.46 1.6E-05 40.5 7.3 105 20-130 83-206 (406)
28 1woq_A Inorganic polyphosphate 91.6 0.75 2.6E-05 36.9 8.1 107 20-130 10-134 (267)
29 1z05_A Transcriptional regulat 90.9 0.53 1.8E-05 40.6 7.0 105 20-130 106-228 (429)
30 3htv_A D-allose kinase, alloki 90.1 0.26 8.8E-06 40.9 4.1 98 21-122 6-119 (310)
31 1zc6_A Probable N-acetylglucos 89.8 2 6.8E-05 35.0 9.2 91 23-126 12-117 (305)
32 2gel_A Putative GRAM negative 89.7 6.5 0.00022 31.3 12.7 87 23-118 2-93 (231)
33 2ivn_A O-sialoglycoprotein end 89.7 3.2 0.00011 34.7 10.6 93 22-120 1-108 (330)
34 2a6a_A Hypothetical protein TM 89.4 6.3 0.00021 31.3 11.7 97 20-129 10-111 (218)
35 2q2r_A Glucokinase 1, putative 89.1 0.72 2.5E-05 38.9 6.3 63 21-85 28-100 (373)
36 1sz2_A Glucokinase, glucose ki 88.9 1.2 4.2E-05 36.8 7.4 101 19-129 11-121 (332)
37 2yhw_A Bifunctional UDP-N-acet 87.0 1.4 4.8E-05 36.5 6.6 105 20-130 28-151 (343)
38 1zbs_A Hypothetical protein PG 87.0 1.1 3.8E-05 36.4 5.9 92 24-126 2-104 (291)
39 3eno_A Putative O-sialoglycopr 86.5 4.7 0.00016 33.9 9.7 94 19-118 3-111 (334)
40 2ych_A Competence protein PILM 86.0 3.1 0.00011 34.6 8.3 63 22-84 13-85 (377)
41 4ehu_A Activator of 2-hydroxyi 85.8 2.1 7.2E-05 34.2 6.9 50 22-73 1-50 (276)
42 3en9_A Glycoprotease, O-sialog 82.4 8.1 0.00028 34.3 9.8 93 20-118 4-110 (540)
43 2h3g_X Biosynthetic protein; p 81.7 13 0.00044 30.3 10.1 57 23-81 1-63 (268)
44 3ll3_A Gluconate kinase; xylul 81.6 3 0.0001 36.9 6.6 62 20-81 2-77 (504)
45 3bex_A Type III pantothenate k 81.1 5.5 0.00019 32.1 7.5 58 22-81 3-63 (249)
46 1zxo_A Conserved hypothetical 78.6 0.58 2E-05 38.1 0.9 89 24-122 2-98 (291)
47 3ifr_A Carbohydrate kinase, FG 78.6 5.3 0.00018 35.2 7.2 63 21-83 6-85 (508)
48 4e1j_A Glycerol kinase; struct 77.9 6.2 0.00021 35.0 7.5 62 22-83 26-104 (520)
49 2p3r_A Glycerol kinase; glycer 77.9 6.1 0.00021 34.9 7.4 63 21-83 2-81 (510)
50 3h1q_A Ethanolamine utilizatio 77.8 14 0.00049 28.9 9.0 64 22-85 28-102 (272)
51 3g25_A Glycerol kinase; IDP007 77.2 6.3 0.00022 34.6 7.3 25 22-46 6-30 (501)
52 2dpn_A Glycerol kinase; thermu 77.1 7.4 0.00025 34.1 7.7 62 22-83 2-80 (495)
53 3kht_A Response regulator; PSI 76.4 12 0.00042 25.6 7.4 88 64-159 41-132 (144)
54 3i8b_A Xylulose kinase; strain 76.1 7.6 0.00026 34.4 7.5 60 21-81 4-71 (515)
55 1yuw_A Heat shock cognate 71 k 75.5 1.7 5.7E-05 39.0 3.1 24 19-42 1-24 (554)
56 3h6e_A Carbohydrate kinase, FG 74.5 9.4 0.00032 33.7 7.7 61 22-82 6-76 (482)
57 1dkg_D Molecular chaperone DNA 74.0 1.5 5.1E-05 36.7 2.2 20 22-41 2-21 (383)
58 1hux_A Activator of (R)-2-hydr 73.6 14 0.00049 29.6 8.1 25 22-46 3-27 (270)
59 3hz6_A Xylulokinase; xylulose, 73.5 7.7 0.00026 34.2 6.9 52 21-72 4-63 (511)
60 2zf5_O Glycerol kinase; hypert 73.0 9.8 0.00034 33.3 7.4 62 22-83 3-81 (497)
61 3l0q_A Xylulose kinase; xlylul 72.6 7.4 0.00025 34.7 6.6 52 20-71 3-62 (554)
62 4gni_A Putative heat shock pro 70.9 2.6 8.9E-05 35.6 3.0 20 20-39 11-30 (409)
63 2d4w_A Glycerol kinase; alpha 70.1 12 0.00041 32.8 7.3 61 23-83 3-80 (504)
64 2w40_A Glycerol kinase, putati 70.1 9.3 0.00032 33.5 6.6 62 22-83 4-84 (503)
65 3i33_A Heat shock-related 70 k 70.0 2.6 8.9E-05 35.4 2.9 22 21-42 22-43 (404)
66 3h3n_X Glycerol kinase; ATP-bi 70.0 10 0.00035 33.4 6.8 62 21-82 4-82 (506)
67 3qfu_A 78 kDa glucose-regulate 68.7 3.3 0.00011 34.5 3.2 22 21-42 17-38 (394)
68 2uyt_A Rhamnulokinase; rhamnos 67.9 9.6 0.00033 33.1 6.1 63 20-82 2-81 (489)
69 2itm_A Xylulose kinase, xylulo 67.8 17 0.00059 31.5 7.8 61 24-84 2-77 (484)
70 4b9q_A Chaperone protein DNAK; 66.1 4.4 0.00015 36.7 3.7 20 22-41 2-21 (605)
71 3ezw_A Glycerol kinase; glycer 65.1 14 0.00048 32.6 6.7 50 21-70 3-60 (526)
72 3qze_A DHDPS, dihydrodipicolin 64.5 27 0.00092 29.0 8.0 96 24-131 8-112 (314)
73 4a2a_A Cell division protein F 63.8 18 0.00061 31.2 7.0 64 21-84 7-85 (419)
74 1kcf_A Hypothetical 30.2 KD pr 63.1 33 0.0011 28.0 8.2 65 22-87 40-124 (258)
75 1jmv_A USPA, universal stress 61.9 26 0.00087 24.1 6.5 48 63-119 91-138 (141)
76 2kho_A Heat shock protein 70; 61.9 4.3 0.00015 36.8 2.8 21 22-42 2-22 (605)
77 2v7y_A Chaperone protein DNAK; 61.2 5.6 0.00019 35.1 3.3 21 22-42 2-22 (509)
78 2f9w_A Pantothenate kinase; CO 60.7 16 0.00056 29.9 5.9 21 20-40 21-41 (271)
79 3d2f_A Heat shock protein homo 60.6 4.8 0.00016 37.2 2.9 21 22-42 2-22 (675)
80 2bdq_A Copper homeostasis prot 60.2 27 0.00093 28.1 7.0 59 69-136 84-148 (224)
81 2gkg_A Response regulator homo 57.7 36 0.0012 22.1 7.3 64 64-135 39-102 (127)
82 3jvp_A Ribulokinase; PSI-II, N 53.0 18 0.00063 32.2 5.4 25 21-45 4-29 (572)
83 3lyh_A Cobalamin (vitamin B12) 52.9 39 0.0013 23.6 6.2 55 76-136 7-63 (126)
84 1twd_A Copper homeostasis prot 52.7 32 0.0011 28.2 6.3 60 68-136 80-143 (256)
85 2l69_A Rossmann 2X3 fold prote 52.3 36 0.0012 24.2 5.7 50 61-120 37-86 (134)
86 3hdg_A Uncharacterized protein 51.2 52 0.0018 22.0 9.1 90 64-164 41-130 (137)
87 3cpe_A Terminase, DNA packagin 50.6 47 0.0016 29.6 7.7 61 21-81 419-483 (592)
88 3eul_A Possible nitrate/nitrit 50.3 58 0.002 22.3 7.2 63 63-135 50-112 (152)
89 3grc_A Sensor protein, kinase; 50.2 55 0.0019 21.9 8.5 91 64-162 40-130 (140)
90 3gi1_A LBP, laminin-binding pr 49.7 28 0.00096 28.3 5.6 43 90-136 211-253 (286)
91 2yhx_A Hexokinase B; transfera 49.5 14 0.00047 32.6 3.9 26 20-45 59-84 (457)
92 2qxy_A Response regulator; reg 49.3 55 0.0019 22.0 6.4 58 64-131 38-95 (142)
93 4e7p_A Response regulator; DNA 48.9 61 0.0021 22.2 7.3 63 63-135 55-117 (150)
94 3thx_A DNA mismatch repair pro 47.9 1.8E+02 0.006 28.0 11.5 55 21-81 144-202 (934)
95 1bdg_A Hexokinase; phosphotran 47.2 26 0.00089 30.7 5.3 24 20-43 66-89 (451)
96 2prs_A High-affinity zinc upta 46.4 37 0.0013 27.4 5.8 44 89-136 205-248 (284)
97 3u7r_A NADPH-dependent FMN red 45.9 47 0.0016 25.4 6.0 54 63-118 58-111 (190)
98 1toa_A Tromp-1, protein (perip 45.7 40 0.0014 27.8 6.0 44 89-136 228-276 (313)
99 1tq8_A Hypothetical protein RV 44.5 36 0.0012 24.5 5.0 50 63-119 108-158 (163)
100 3gt7_A Sensor protein; structu 44.3 76 0.0026 21.9 7.5 88 64-160 41-128 (154)
101 3n53_A Response regulator rece 44.1 53 0.0018 22.1 5.6 56 64-126 36-91 (140)
102 3tb6_A Arabinose metabolism tr 44.1 69 0.0024 24.5 6.9 45 66-121 63-109 (298)
103 2gm3_A Unknown protein; AT3G01 44.0 39 0.0013 24.2 5.2 52 63-120 113-164 (175)
104 3eod_A Protein HNR; response r 43.8 67 0.0023 21.1 7.5 59 64-131 41-99 (130)
105 3hv2_A Response regulator/HD d 43.3 77 0.0026 21.7 10.3 87 64-160 48-134 (153)
106 3f6c_A Positive transcription 43.0 49 0.0017 22.0 5.2 55 67-130 39-93 (134)
107 2o1e_A YCDH; alpha-beta protei 42.7 37 0.0013 28.0 5.3 44 89-136 221-264 (312)
108 2qr3_A Two-component system re 42.3 73 0.0025 21.1 6.2 60 64-131 37-100 (140)
109 3cx3_A Lipoprotein; zinc-bindi 42.2 51 0.0017 26.6 6.0 43 90-136 209-251 (284)
110 3kki_A CAI-1 autoinducer synth 42.1 66 0.0022 26.3 6.8 52 63-123 175-227 (409)
111 3cz5_A Two-component response 42.0 81 0.0028 21.5 8.0 59 64-131 41-99 (153)
112 3jte_A Response regulator rece 41.4 78 0.0027 21.2 6.9 59 64-131 37-97 (143)
113 3t6k_A Response regulator rece 41.0 66 0.0022 21.7 5.7 61 64-131 38-98 (136)
114 2zay_A Response regulator rece 39.6 85 0.0029 21.1 7.8 61 64-131 42-102 (147)
115 1t6c_A Exopolyphosphatase; alp 39.4 80 0.0028 26.0 6.9 89 21-118 11-118 (315)
116 1jce_A ROD shape-determining p 39.1 15 0.00052 29.9 2.4 19 22-40 3-21 (344)
117 2rjn_A Response regulator rece 39.0 91 0.0031 21.3 9.3 63 64-135 41-103 (154)
118 2qsj_A DNA-binding response re 38.8 91 0.0031 21.2 7.4 85 64-159 39-124 (154)
119 3tnj_A Universal stress protei 38.8 29 0.001 24.0 3.6 20 63-82 98-117 (150)
120 2ekc_A AQ_1548, tryptophan syn 38.5 1.1E+02 0.0038 24.3 7.5 53 63-117 33-100 (262)
121 1mjh_A Protein (ATP-binding do 38.4 30 0.001 24.4 3.6 21 63-83 109-129 (162)
122 3hzh_A Chemotaxis response reg 37.8 97 0.0033 21.4 6.4 62 64-135 71-134 (157)
123 3cnb_A DNA-binding response re 37.4 89 0.003 20.7 8.2 88 64-160 44-131 (143)
124 1xvl_A Mn transporter, MNTC pr 37.4 60 0.002 26.9 5.8 44 89-136 235-278 (321)
125 1qv9_A F420-dependent methylen 37.4 80 0.0027 26.0 6.3 68 69-147 59-135 (283)
126 1tmy_A CHEY protein, TMY; chem 37.1 83 0.0028 20.2 6.0 59 64-131 37-95 (120)
127 1qkk_A DCTD, C4-dicarboxylate 37.1 83 0.0028 21.5 5.8 62 64-135 37-98 (155)
128 4h08_A Putative hydrolase; GDS 36.7 1.1E+02 0.0039 22.0 6.8 55 61-117 61-117 (200)
129 3ujp_A Mn transporter subunit; 36.7 69 0.0024 26.4 6.1 43 90-136 222-264 (307)
130 3gl9_A Response regulator; bet 36.4 90 0.0031 20.5 7.6 61 64-131 36-96 (122)
131 2ews_A Pantothenate kinase; PA 36.2 1E+02 0.0035 25.3 7.0 51 21-80 19-69 (287)
132 3b2n_A Uncharacterized protein 36.0 95 0.0032 20.6 7.5 59 64-131 39-97 (133)
133 3gv0_A Transcriptional regulat 35.8 1.4E+02 0.0048 22.8 7.6 18 64-81 56-73 (288)
134 3iwp_A Copper homeostasis prot 35.8 1.2E+02 0.004 25.2 7.3 61 66-135 116-180 (287)
135 3h75_A Periplasmic sugar-bindi 35.6 1.3E+02 0.0043 23.9 7.4 47 63-122 50-97 (350)
136 3g0t_A Putative aminotransfera 34.3 1.1E+02 0.0039 24.9 7.1 54 63-122 171-225 (437)
137 3k1y_A Oxidoreductase; structu 33.7 68 0.0023 24.4 5.2 49 63-117 76-124 (191)
138 3cu5_A Two component transcrip 33.4 1.1E+02 0.0038 20.6 6.0 50 64-122 39-88 (141)
139 2xws_A Sirohydrochlorin cobalt 32.2 1E+02 0.0036 21.2 5.7 48 77-130 6-58 (133)
140 3fdx_A Putative filament prote 31.9 38 0.0013 23.1 3.2 21 63-83 95-115 (143)
141 3k4h_A Putative transcriptiona 31.8 1.7E+02 0.0057 22.2 7.5 44 63-120 58-101 (292)
142 2ioy_A Periplasmic sugar-bindi 31.7 1.3E+02 0.0044 23.0 6.6 17 64-81 48-64 (283)
143 3hh8_A Metal ABC transporter s 31.5 71 0.0024 26.0 5.3 43 90-136 215-257 (294)
144 3f9t_A TDC, L-tyrosine decarbo 31.2 1.4E+02 0.0047 23.6 6.9 51 63-122 160-211 (397)
145 2z08_A Universal stress protei 31.1 40 0.0014 23.0 3.2 22 63-84 88-109 (137)
146 1b5f_B Protein (cardosin A); h 30.9 40 0.0014 22.0 3.0 16 24-39 71-86 (87)
147 3mfq_A TROA, high-affinity zin 30.9 95 0.0033 25.0 5.9 37 90-130 195-231 (282)
148 1f07_A Coenzyme F420-dependent 30.8 82 0.0028 25.3 5.5 40 58-103 278-318 (321)
149 3qk7_A Transcriptional regulat 30.6 95 0.0033 24.0 5.7 18 64-81 55-72 (294)
150 3svl_A Protein YIEF; E. coli C 30.5 93 0.0032 23.5 5.5 51 63-118 63-115 (193)
151 3l8a_A METC, putative aminotra 30.1 93 0.0032 25.5 5.9 54 63-122 183-237 (421)
152 1p6q_A CHEY2; chemotaxis, sign 29.8 1.2E+02 0.004 19.8 8.0 61 64-131 41-101 (129)
153 3a2b_A Serine palmitoyltransfe 29.7 1.2E+02 0.004 24.5 6.3 51 63-122 159-213 (398)
154 3n2q_A Sex pheromone staph-CAM 29.6 39 0.0013 28.2 3.3 42 74-115 87-133 (287)
155 5nul_A Flavodoxin; electron tr 29.5 52 0.0018 22.8 3.6 10 96-105 96-105 (138)
156 1ivn_A Thioesterase I; hydrola 29.3 1.5E+02 0.0053 21.0 7.0 53 62-118 50-106 (190)
157 1o13_A Probable NIFB protein; 29.2 1.1E+02 0.0037 21.9 5.4 54 65-135 67-120 (136)
158 3euc_A Histidinol-phosphate am 29.0 1.4E+02 0.0047 23.7 6.6 56 63-122 146-202 (367)
159 3dzz_A Putative pyridoxal 5'-p 29.0 1E+02 0.0036 24.5 5.8 54 63-122 149-203 (391)
160 2yx6_A Hypothetical protein PH 28.9 1.4E+02 0.0048 20.4 7.2 55 64-135 53-107 (121)
161 3r0j_A Possible two component 28.8 1.9E+02 0.0064 21.8 7.7 59 64-131 57-115 (250)
162 3jy6_A Transcriptional regulat 28.8 1.9E+02 0.0065 21.8 7.5 43 64-121 53-95 (276)
163 1z69_A COG2141, coenzyme F420- 28.7 81 0.0028 25.4 5.2 40 58-102 284-323 (327)
164 4dad_A Putative pilus assembly 28.5 94 0.0032 20.9 4.8 59 64-131 56-115 (146)
165 3vzx_A Heptaprenylglyceryl pho 28.5 82 0.0028 25.1 5.0 38 71-117 28-65 (228)
166 2dr3_A UPF0273 protein PH0284; 28.4 1.8E+02 0.0061 21.5 7.3 59 60-122 114-174 (247)
167 3m9w_A D-xylose-binding peripl 28.4 2E+02 0.007 22.1 8.6 43 66-120 50-92 (313)
168 4bc3_A Xylulose kinase; transf 28.3 47 0.0016 29.3 3.8 27 19-45 7-33 (538)
169 3lua_A Response regulator rece 28.2 86 0.0029 20.9 4.6 65 64-135 39-104 (140)
170 3kax_A Aminotransferase, class 28.1 1.3E+02 0.0046 23.7 6.4 53 63-122 146-199 (383)
171 3h7f_A Serine hydroxymethyltra 28.0 1.4E+02 0.0049 24.8 6.8 50 63-123 174-224 (447)
172 2wfb_A Putative uncharacterize 28.0 1.2E+02 0.004 20.9 5.3 55 65-135 58-112 (120)
173 1mb3_A Cell division response 27.9 1.2E+02 0.0042 19.4 6.6 59 65-130 36-94 (124)
174 3oby_A Protein pelota homolog; 27.7 89 0.003 26.5 5.3 139 12-162 121-262 (352)
175 3nra_A Aspartate aminotransfer 27.5 1.6E+02 0.0055 23.5 6.8 54 63-123 169-223 (407)
176 2vtf_A Endo-beta-N-acetylgluco 27.5 1.6E+02 0.0055 27.0 7.3 57 61-119 156-212 (626)
177 1jbe_A Chemotaxis protein CHEY 27.5 1.3E+02 0.0044 19.5 7.0 61 64-131 39-99 (128)
178 2dum_A Hypothetical protein PH 27.5 48 0.0016 23.5 3.2 54 63-122 106-159 (170)
179 3o8m_A Hexokinase; rnaseh-like 27.4 47 0.0016 29.5 3.7 25 20-44 78-102 (485)
180 1k66_A Phytochrome response re 27.4 1.4E+02 0.0047 19.8 7.6 55 73-135 61-115 (149)
181 3c6a_A Terminase large subunit 27.3 2.3E+02 0.0079 22.4 7.7 60 19-81 57-123 (232)
182 3mdq_A Exopolyphosphatase; str 27.3 1.1E+02 0.0039 25.0 5.8 89 21-118 3-110 (315)
183 2yvt_A Hypothetical protein AQ 27.3 1.6E+02 0.0053 22.2 6.4 19 63-81 21-39 (260)
184 3nkl_A UDP-D-quinovosamine 4-d 27.2 92 0.0031 21.5 4.6 46 64-119 55-100 (141)
185 1q77_A Hypothetical protein AQ 27.0 40 0.0014 23.0 2.6 19 63-81 98-116 (138)
186 4hs4_A Chromate reductase; tri 27.0 86 0.0029 23.8 4.7 50 63-117 64-115 (199)
187 3hcw_A Maltose operon transcri 27.0 2.1E+02 0.0073 21.9 7.8 43 64-120 58-100 (295)
188 1t0i_A YLR011WP; FMN binding p 26.9 1.1E+02 0.0036 22.4 5.1 47 64-117 76-122 (191)
189 3sim_A Protein, family 18 chit 26.9 1.3E+02 0.0043 24.0 6.0 55 62-119 199-255 (275)
190 3hgm_A Universal stress protei 26.9 46 0.0016 22.7 2.9 22 63-84 99-120 (147)
191 2fz5_A Flavodoxin; alpha/beta 26.8 1.2E+02 0.004 20.5 5.1 40 74-116 46-85 (137)
192 1c7n_A Cystalysin; transferase 26.5 1.2E+02 0.0041 24.4 5.8 54 63-122 153-207 (399)
193 3o74_A Fructose transport syst 26.4 2E+02 0.0069 21.4 7.9 44 64-121 48-92 (272)
194 3dlo_A Universal stress protei 26.3 52 0.0018 23.4 3.2 21 63-83 106-126 (155)
195 2zyj_A Alpha-aminodipate amino 26.2 1.2E+02 0.004 24.5 5.7 55 63-123 151-207 (397)
196 1d2f_A MALY protein; aminotran 25.7 1.1E+02 0.0038 24.6 5.4 54 63-122 151-205 (390)
197 3w01_A Heptaprenylglyceryl pho 25.5 1.3E+02 0.0044 24.1 5.7 44 64-117 27-70 (235)
198 1uf3_A Hypothetical protein TT 25.4 1.4E+02 0.0046 21.8 5.5 48 63-117 21-69 (228)
199 3r6w_A FMN-dependent NADH-azor 25.4 81 0.0028 23.7 4.3 36 66-104 78-114 (212)
200 1cza_N Hexokinase type I; stru 25.2 54 0.0019 31.3 3.8 25 20-44 76-100 (917)
201 1ii7_A MRE11 nuclease; RAD50, 24.9 2.5E+02 0.0084 22.5 7.5 51 63-117 29-81 (333)
202 1pq4_A Periplasmic binding pro 24.9 86 0.0029 25.4 4.6 43 89-135 219-261 (291)
203 3olq_A Universal stress protei 24.9 1.8E+02 0.0062 22.6 6.5 50 63-118 255-304 (319)
204 1eo1_A Hypothetical protein MT 24.7 1.7E+02 0.0059 20.1 6.6 52 65-133 56-107 (124)
205 2jk1_A HUPR, hydrogenase trans 24.5 1.6E+02 0.0054 19.5 6.4 63 64-135 34-96 (139)
206 2q8u_A Exonuclease, putative; 24.2 1.8E+02 0.0063 23.3 6.6 51 62-117 49-102 (336)
207 3s3t_A Nucleotide-binding prot 24.1 57 0.0019 22.3 2.9 21 63-83 96-117 (146)
208 1ezw_A Coenzyme F420-dependent 24.0 1.1E+02 0.0039 24.9 5.3 41 58-103 303-343 (349)
209 3ezx_A MMCP 1, monomethylamine 24.0 2.5E+02 0.0084 21.6 8.6 96 47-157 119-215 (215)
210 3ksm_A ABC-type sugar transpor 23.9 2.3E+02 0.0077 21.1 6.8 45 63-119 48-92 (276)
211 3daq_A DHDPS, dihydrodipicolin 23.8 1.8E+02 0.0061 23.5 6.4 62 63-131 86-154 (292)
212 3cet_A Conserved archaeal prot 23.6 69 0.0024 27.2 3.8 22 23-44 1-22 (334)
213 3lte_A Response regulator; str 23.5 1.6E+02 0.0054 19.2 7.6 59 64-130 40-98 (132)
214 1y80_A Predicted cobalamin bin 23.5 2.4E+02 0.0081 21.2 9.4 82 63-157 128-209 (210)
215 2xwp_A Sirohydrochlorin cobalt 23.5 1.6E+02 0.0053 23.3 5.8 55 76-136 4-75 (264)
216 3rqi_A Response regulator prot 23.5 2E+02 0.0069 20.4 6.4 59 64-131 41-99 (184)
217 1iay_A ACC synthase 2, 1-amino 23.5 1.9E+02 0.0065 23.6 6.6 55 63-123 172-232 (428)
218 3cg0_A Response regulator rece 22.6 1.7E+02 0.0058 19.2 9.4 86 64-160 44-129 (140)
219 3av0_A DNA double-strand break 22.6 2.2E+02 0.0074 23.6 6.8 51 63-117 49-101 (386)
220 1i3c_A Response regulator RCP1 22.5 1.8E+02 0.0063 19.6 8.2 52 73-131 60-111 (149)
221 3i16_A Aluminum resistance pro 22.5 1.5E+02 0.0051 25.3 5.9 54 63-123 164-223 (427)
222 1srr_A SPO0F, sporulation resp 22.4 1.6E+02 0.0056 18.9 8.0 59 64-131 37-95 (124)
223 3huu_A Transcription regulator 22.3 2.7E+02 0.0091 21.4 7.4 44 64-121 73-116 (305)
224 2w8t_A SPT, serine palmitoyltr 22.3 1.2E+02 0.0042 24.9 5.2 52 63-123 180-235 (427)
225 1rtt_A Conserved hypothetical 22.2 1.3E+02 0.0045 22.0 4.9 37 64-105 64-100 (193)
226 3o1i_D Periplasmic protein TOR 22.1 2.2E+02 0.0075 21.6 6.4 43 64-121 54-97 (304)
227 3l6u_A ABC-type sugar transpor 21.9 2.6E+02 0.0089 21.1 7.1 45 64-121 55-99 (293)
228 3hi0_A Putative exopolyphospha 21.9 3E+02 0.01 24.0 7.9 90 20-118 13-121 (508)
229 1t5b_A Acyl carrier protein ph 21.9 1.1E+02 0.0038 22.2 4.4 28 74-104 86-113 (201)
230 3j15_A Protein pelota; ribosom 21.8 1E+02 0.0035 26.0 4.6 130 20-161 134-275 (357)
231 1dbw_A Transcriptional regulat 21.7 1.7E+02 0.0058 18.9 7.0 59 64-131 37-95 (126)
232 3kto_A Response regulator rece 21.7 63 0.0022 21.7 2.8 60 64-131 40-100 (136)
233 2vzf_A NADH-dependent FMN redu 21.6 1E+02 0.0035 22.9 4.2 48 64-117 61-108 (197)
234 1tjn_A Sirohydrochlorin cobalt 21.6 1.9E+02 0.0065 20.9 5.6 50 75-130 25-79 (156)
235 1luc_A Bacterial luciferase; m 21.5 1.2E+02 0.0043 24.7 5.0 46 58-104 303-348 (355)
236 3cq5_A Histidinol-phosphate am 21.5 2E+02 0.0067 22.9 6.2 51 63-122 153-204 (369)
237 3nhm_A Response regulator; pro 21.3 1.8E+02 0.006 18.9 9.1 87 64-160 37-123 (133)
238 1ccw_A Protein (glutamate muta 21.2 2E+02 0.0069 20.3 5.6 47 63-115 43-89 (137)
239 2yrr_A Aminotransferase, class 21.1 1.6E+02 0.0056 22.7 5.5 51 63-122 113-164 (353)
240 2wkj_A N-acetylneuraminate lya 21.1 2.1E+02 0.007 23.3 6.2 61 64-131 96-164 (303)
241 2f6u_A GGGPS, (S)-3-O-geranylg 21.1 1.6E+02 0.0056 23.3 5.4 41 67-116 26-66 (234)
242 3obw_A Protein pelota homolog; 20.9 3.8E+02 0.013 22.6 9.0 128 22-161 148-280 (364)
243 3fg9_A Protein of universal st 20.9 61 0.0021 22.6 2.6 21 63-83 107-128 (156)
244 2rdm_A Response regulator rece 20.7 1.8E+02 0.0062 18.8 6.7 60 64-131 39-99 (132)
245 3loq_A Universal stress protei 20.7 2.4E+02 0.0083 21.7 6.4 50 63-119 240-290 (294)
246 3q9s_A DNA-binding response re 20.7 2.5E+02 0.0085 21.3 6.4 58 64-131 71-128 (249)
247 3i42_A Response regulator rece 20.7 1.8E+02 0.0061 18.8 6.6 51 64-121 37-87 (127)
248 2xvy_A Chelatase, putative; me 20.7 1.8E+02 0.0061 22.7 5.6 35 76-116 11-46 (269)
249 3piu_A 1-aminocyclopropane-1-c 20.5 1.8E+02 0.0062 23.8 5.9 55 63-123 175-235 (435)
250 2yxb_A Coenzyme B12-dependent 20.5 2.5E+02 0.0087 20.4 6.5 105 47-163 45-149 (161)
251 1fs5_A Glucosamine-6-phosphate 20.3 1.7E+02 0.0057 23.0 5.4 55 63-121 17-75 (266)
252 4gmk_A Ribose-5-phosphate isom 20.3 2.2E+02 0.0076 22.7 6.1 54 72-136 17-70 (228)
253 2hpv_A FMN-dependent NADH-azor 20.3 1.3E+02 0.0043 22.3 4.5 28 74-104 94-121 (208)
254 3cfy_A Putative LUXO repressor 20.2 2E+02 0.0068 19.1 7.6 59 64-131 38-96 (137)
255 3cer_A Possible exopolyphospha 20.2 1.4E+02 0.0047 24.9 5.0 89 21-118 15-123 (343)
256 3g13_A Putative conjugative tr 20.2 71 0.0024 23.2 2.9 55 63-124 64-118 (169)
257 1qop_A Tryptophan synthase alp 20.1 3.1E+02 0.011 21.6 7.0 52 63-116 33-99 (268)
No 1
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=100.00 E-value=3.9e-46 Score=287.47 Aligned_cols=134 Identities=20% Similarity=0.323 Sum_probs=117.1
Q ss_pred CCeEEEEecCCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHHHHHhcCCCEEEEeccCC-CCCCchHHHHHHHH
Q 030509 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLF 99 (176)
Q Consensus 21 ~~~iLglD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~e~~~~~iVVGlPl~-dG~~s~~~~~v~~F 99 (176)
++++||||||++|||||+||+.+.+|+|++||.+.+.+.+ +++|.+++++|+|+.||||+|+| ||+++++++++++|
T Consensus 2 ~~~iLglD~G~kriGvAvsd~~~~~A~pl~ti~~~~~~~~--~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f 79 (138)
T 1nu0_A 2 SGTLMAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPD--WNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKF 79 (138)
T ss_dssp CCEEEEEECCSSEEEEEEEETTTTEEEEEEEEEEETTEEC--HHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHHHHHHH
T ss_pred CCeEEEEEeCCCEEEEEEEcCCCCEEeeEEEEEcCCcchH--HHHHHHHHHHcCCCEEEEecccCCCcCcCHHHHHHHHH
Confidence 4689999999999999999999999999999987544433 79999999999999999999999 99999999999999
Q ss_pred HHHHHhccCCCCCcEEEecCcccHHHHHHHhccCCCCCCCCCCCCcHHHHHHHHHHHHhh
Q 030509 100 IDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTILDKFAAVGILQEYLDN 159 (176)
Q Consensus 100 a~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~~~~~~k~~iD~~AA~iILq~yL~~ 159 (176)
+++|++. + ++||++|||||||++|++.|++.+.+++++|+.+|++||++|||+||++
T Consensus 80 ~~~L~~~--~-~lpV~~~DERlTT~~A~~~l~~~~~~~~~~k~~iD~~AA~iILq~yLd~ 136 (138)
T 1nu0_A 80 ANRIHGR--F-GVEVKLHDERLSTVEARSGLFEQGGYRALNKGKVDSASAVIILESYMEQ 136 (138)
T ss_dssp HHHHHHH--H-CCCEEEEEEECCCCCC-------CCCCCCCHHHHTTHHHHHHHHHHHHT
T ss_pred HHHHHHH--h-CCCEEEEcCCcCHHHHHHHHHHhcCcccccCcchhHHHHHHHHHHHHhc
Confidence 9999974 5 7999999999999999999998776777788899999999999999986
No 2
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=100.00 E-value=2e-41 Score=264.19 Aligned_cols=138 Identities=28% Similarity=0.455 Sum_probs=125.8
Q ss_pred CeEEEEecCCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHHHHHhcCCCEEEEeccCC-CCCCchHHHHHHHHH
Q 030509 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLFI 100 (176)
Q Consensus 22 ~~iLglD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~e~~~~~iVVGlPl~-dG~~s~~~~~v~~Fa 100 (176)
|++||||||++|||+|++|+.+.+++|+.+|.+.+...+..++.|.+++++|+|+.||||+|++ ||+.++++.+++.|+
T Consensus 3 mriLGiDpG~~riGvAv~d~~g~~a~p~~~I~~~~~r~~~~~~~l~~li~~~~~~~ivVGlP~~~nGt~~~~~~~ar~f~ 82 (150)
T 1vhx_A 3 LRILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQTFA 82 (150)
T ss_dssp EEEEEEEECSSEEEEEEECTTSSSEEEEEEEECBGGGTBCCHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHHHH
T ss_pred CEEEEEEccCCEEEEEEEECCCCEEeeEEEEEcCCcchHHHHHHHHHHHHHcCCCEEEEeeeecCCcchhHHHHHHHHHH
Confidence 6899999999999999999999999999999865311123479999999999999999999999 999999999999999
Q ss_pred HHHHhccCCCCCcEEEecCcccHHHHHHHhccCCCCCCCCCCCCcHHHHHHHHHHHHhhhhh
Q 030509 101 DDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTILDKFAAVGILQEYLDNANR 162 (176)
Q Consensus 101 ~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~~~~~~k~~iD~~AA~iILq~yL~~~~~ 162 (176)
..|.+. + ++||++|||||||.+|++.|++.|++++++|+.+|++||++|||+||+..+.
T Consensus 83 ~~L~~~--~-~lpV~~vDEr~Ts~~Ak~~l~~~g~~r~~~k~~iD~~AA~iILq~~L~~~~~ 141 (150)
T 1vhx_A 83 KVLETT--Y-NVPVVLWDERLTTMAAEKMLIAADVSRQKRKKVIDKMAAVMILQGYLDSLNE 141 (150)
T ss_dssp HHHHHH--H-CSCEEEECCSSCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHh--h-CCCEEEecCCCCHHHHHHHHHHcCCcccccCccHhHHHHHHHHHHHHhcccc
Confidence 999874 4 8999999999999999999999999988889999999999999999997644
No 3
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=100.00 E-value=9.6e-34 Score=206.71 Aligned_cols=97 Identities=28% Similarity=0.446 Sum_probs=89.4
Q ss_pred CeEEEEecCCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHHHHHhcCCCEEEEeccCC-CCCCchHHHHHHHHH
Q 030509 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLFI 100 (176)
Q Consensus 22 ~~iLglD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~e~~~~~iVVGlPl~-dG~~s~~~~~v~~Fa 100 (176)
|++||||||+||||||+||+.+.+|+|+++|.+.+. +..+++|.+++++|+++.||||+|++ ||+++++++++++|+
T Consensus 1 mriLglD~G~kriGvAvsd~~~~~A~pl~ti~~~~~--~~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~ 78 (98)
T 1iv0_A 1 MRVGALDVGEARIGLAVGEEGVPLASGRGYLVRKTL--EEDVEALLDFVRREGLGKLVVGLPLRTDLKESAQAGKVLPLV 78 (98)
T ss_dssp CCEEEEEESSSEEEEEEECSCCSSCCCEEEEECCCH--HHHHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSSTTHHHH
T ss_pred CcEEEEEeCCCEEEEEEEeCCCCeeeeeEEEEccCc--HHHHHHHHHHHHHcCCCEEEEeeccCCCCCcCHHHHHHHHHH
Confidence 479999999999999999999999999999976533 34589999999999999999999999 999999999999999
Q ss_pred HHHHhccCCCCCcEEEecCcccHH
Q 030509 101 DDLSATKKLEDMKYAYWNEGFTSK 124 (176)
Q Consensus 101 ~~L~~~~~~~~lpV~~~DEr~TT~ 124 (176)
++|++. ++||++|||||||+
T Consensus 79 ~~L~~~----~lpV~~~DERlTT~ 98 (98)
T 1iv0_A 79 EALRAR----GVEVELWDERFTTK 98 (98)
T ss_dssp HHHHHT----TCEEEEECCSCCCC
T ss_pred HHHhcC----CCCEEEECCCCCCC
Confidence 999972 79999999999984
No 4
>4ep4_A Crossover junction endodeoxyribonuclease RUVC; resolvase, hydrolase; 1.28A {Thermus thermophilus} PDB: 4ep5_A
Probab=98.64 E-value=2.5e-07 Score=72.76 Aligned_cols=102 Identities=16% Similarity=0.094 Sum_probs=73.1
Q ss_pred CeEEEEecCCCeEEEEEecCCCc---eeccc--eeeeCCCCC-----hhhHHHHHHHHHHhcCCCEEEEeccCC--CCCC
Q 030509 22 GRFLGLDVGDKYVGLSISDPKNK---IASPL--SVLLRKKNT-----IDLMAEDFRSLISEFNLEGFIVGYPFN--RQQN 89 (176)
Q Consensus 22 ~~iLglD~G~kriGvAvsd~~~~---~a~Pl--~~i~~~~~~-----~~~~~~~L~~li~e~~~~~iVVGlPl~--dG~~ 89 (176)
|+|||||+|+.++|+++.|..+. -.+.+ .+|...... ...+++.|.+++++|+|+.++|--|+- |.+.
T Consensus 1 MrILGIDPGl~~tG~gvi~~~g~~~~~~~~v~~G~I~t~~~~~~~~RL~~I~~~l~~~i~~~~Pd~vaiE~~F~~~n~~s 80 (166)
T 4ep4_A 1 MVVAGIDPGITHLGLGVVAVEGKGALKARLLHGEVVKTSPQEPAKERVGRIHARVLEVLHRFRPEAVAVEEQFFYRQNEL 80 (166)
T ss_dssp CEEEEEECCSSEEEEEEEEECSSSSSCEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHHCCSEEEEECCCCSSCSHH
T ss_pred CEEEEEccccCceEEEEEEecCCccceEEEEEeCeEECCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeehhhccChHH
Confidence 68999999999999999988765 33333 567654321 124568899999999999999999985 5555
Q ss_pred chHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHh
Q 030509 90 AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLL 130 (176)
Q Consensus 90 s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l 130 (176)
.-...+++.++...... . ++||..+ |..+.+...
T Consensus 81 al~lgqarGv~~la~~~--~-glpv~ey----tP~~vKkav 114 (166)
T 4ep4_A 81 AYKVGWALGAVLVAAFE--A-GVPVYAY----GPMQVKQAL 114 (166)
T ss_dssp HHHHHHHHHHHHHHHHH--H-TCCEEEE----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--c-CCCEEEE----CHHHHHHHh
Confidence 55566677776555432 2 8999876 555555554
No 5
>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6
Probab=98.15 E-value=3.5e-05 Score=59.85 Aligned_cols=93 Identities=15% Similarity=0.210 Sum_probs=62.2
Q ss_pred CeEEEEecCCCeEEEEEecCCCceecc--ceeeeCCCCC----hhhHHHHHHHHHHhcCCCEEEEeccCC--CCCCchHH
Q 030509 22 GRFLGLDVGDKYVGLSISDPKNKIASP--LSVLLRKKNT----IDLMAEDFRSLISEFNLEGFIVGYPFN--RQQNAADA 93 (176)
Q Consensus 22 ~~iLglD~G~kriGvAvsd~~~~~a~P--l~~i~~~~~~----~~~~~~~L~~li~e~~~~~iVVGlPl~--dG~~s~~~ 93 (176)
|+|||||+|+.++|+++.+..+.-.+. ..+|.....+ ...+.+.|.+++++|+|+.++|=-+.- |-+..-..
T Consensus 1 m~ILGIDPGl~~tG~gvi~~~g~~~~~v~~G~i~t~~~~~~~Rl~~i~~~l~~~i~~~~Pd~vaiE~vf~~~n~~s~~~l 80 (158)
T 1hjr_A 1 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKL 80 (158)
T ss_dssp CEEEEEECCSSEEEEEEEEEETTEEEEEEEEEEECCCSCHHHHHHHHHHHHHHHHHHHCCSEEEEEECCCCCCTTTHHHH
T ss_pred CEEEEEccCCCCeeEEEEEecCCeEEEEEeeEEECCCCCHHHHHHHHHHHHHHHHHHcCCCEEEEeecccccChHHHHHH
Confidence 589999999999999999865542222 2455544211 123457789999999999999999887 33333344
Q ss_pred HHHHHHHHHHHhccCCCCCcEEEe
Q 030509 94 VQVKLFIDDLSATKKLEDMKYAYW 117 (176)
Q Consensus 94 ~~v~~Fa~~L~~~~~~~~lpV~~~ 117 (176)
.+++-.+...... . ++||..+
T Consensus 81 gqarGv~~~a~~~--~-~ipv~ey 101 (158)
T 1hjr_A 81 GQARGVAIVAAVN--Q-ELPVFEY 101 (158)
T ss_dssp HHHHHHHHHHHHT--T-TCCEEEE
T ss_pred HHHHHHHHHHHHH--c-CCCEEEE
Confidence 4555554444332 2 8998876
No 6
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=97.81 E-value=0.00013 Score=69.22 Aligned_cols=105 Identities=15% Similarity=0.146 Sum_probs=71.6
Q ss_pred HHhhhccCCCCeEEEEecC-CCeEEEEEecCCCceeccceee-eCCCC-ChhhHHHHHHHHHHhcCCCEEEEeccCCCCC
Q 030509 12 QMLKRKVSKRGRFLGLDVG-DKYVGLSISDPKNKIASPLSVL-LRKKN-TIDLMAEDFRSLISEFNLEGFIVGYPFNRQQ 88 (176)
Q Consensus 12 ~~~~~~~~~~~~iLglD~G-~kriGvAvsd~~~~~a~Pl~~i-~~~~~-~~~~~~~~L~~li~e~~~~~iVVGlPl~dG~ 88 (176)
-++.++. ...++||+|+| +.-|.+|+.|..|.+..- .++ +.... ..+...+.|.+++.+|+|+.|+|| +||
T Consensus 320 lLl~aP~-~~~~vlg~dpg~r~g~k~a~vd~~G~~l~~-~~iy~~~~~~~~~~~~~~l~~li~~~~~~~IaIG----ngt 393 (785)
T 3bzc_A 320 LLLAAPA-GPRATLGLDPGLRTGVKVAVVDATGKLLDT-ATVYPHAPKNQWDQTLAVLAALCAKHQVELIAIG----NGT 393 (785)
T ss_dssp HHTSCCC-CSCCEEEEECCSSSCEEEEEECTTSCEEEE-EEECCSGGGCCHHHHHHHHHHHHHHHTCCEEEEE----SST
T ss_pred HHcCCCC-CCCeEEEECCCCcCceEEEEECCCCCEEEE-EEEecCCchhHHHHHHHHHHHHHHHcCCCEEEEC----CCc
Confidence 3444432 33589999999 567889999999877653 333 22111 112346889999999999999999 998
Q ss_pred CchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHH
Q 030509 89 NAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKG 125 (176)
Q Consensus 89 ~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~ 125 (176)
.|..+ .+|...|.+......+++++++|..+++-
T Consensus 394 asret---~~~v~~l~~~~~~~~i~~v~v~e~gArvy 427 (785)
T 3bzc_A 394 ASRET---DKLAGELIKKYPGMKLTKIMVSEAGASVY 427 (785)
T ss_dssp THHHH---HHHHHHHHHHCGGGCCEEEEECCHHHHHH
T ss_pred cCHHH---HHHHHHHHHhcccCCCCEEEEcCCcCCHH
Confidence 77544 45666664321102689999999886653
No 7
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.0012 Score=64.40 Aligned_cols=95 Identities=9% Similarity=0.135 Sum_probs=61.2
Q ss_pred CeEEEEecCCCe-----EEEEEecCCCceeccceeee-C--CCCChhhHHHHHHHHHHhcCCCEEEEeccCCCCCCchHH
Q 030509 22 GRFLGLDVGDKY-----VGLSISDPKNKIASPLSVLL-R--KKNTIDLMAEDFRSLISEFNLEGFIVGYPFNRQQNAADA 93 (176)
Q Consensus 22 ~~iLglD~G~kr-----iGvAvsd~~~~~a~Pl~~i~-~--~~~~~~~~~~~L~~li~e~~~~~iVVGlPl~dG~~s~~~ 93 (176)
.++||||+|-.. |-+|+.|..|.+..- .+|. . .........+.|.+++..++|+.|+|| +|+. +..
T Consensus 519 ~~VlaldpG~~~~~~~g~k~a~vd~~G~~l~~-~~i~~~~~~~~~~~~~~~~l~~li~~~~~~~IaIG----n~s~-et~ 592 (1030)
T 3psf_A 519 PKILSLTCGQGRFGADAIIAVYVNRKGDFIRD-YKIVDNPFDKTNPEKFEDTLDNIIQSCQPNAIGIN----GPNP-KTQ 592 (1030)
T ss_dssp CCEEEEECTTCCTTTSCEEEEEECTTSCEEEE-EEECSCTTCSSCCHHHHHHHHHHHHHHCCSEEEEC----CSST-HHH
T ss_pred CeEEEecCCCCCCCCCCeEEEEECCCCCEEEE-EEEcCCCCChhhHHHHHHHHHHHHHHcCCcEEEEC----CCCH-HHH
Confidence 489999999763 778999999876542 3442 1 111222335899999999999999999 6644 222
Q ss_pred HHHHHHHHHHHhcc----CCCCCcEEEecCccc
Q 030509 94 VQVKLFIDDLSATK----KLEDMKYAYWNEGFT 122 (176)
Q Consensus 94 ~~v~~Fa~~L~~~~----~~~~lpV~~~DEr~T 122 (176)
+.+....+.+.+.. ...+++|+++||...
T Consensus 593 ~l~~~l~~~i~~~~~~~~~~~~i~~~iV~e~gA 625 (1030)
T 3psf_A 593 KFYKRLQEVLHKKQIVDSRGHTIPIIYVEDEVA 625 (1030)
T ss_dssp HHHHHHHHHHHHTTCBCTTSCBCCEEECCCTTH
T ss_pred HHHHHHHHHHHhhccccccCCCccEEEecchHH
Confidence 22233333333210 013689999999983
No 8
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=97.24 E-value=0.003 Score=62.48 Aligned_cols=95 Identities=9% Similarity=0.135 Sum_probs=60.7
Q ss_pred CeEEEEecCCCe-----EEEEEecCCCceeccceeee-C--CCCChhhHHHHHHHHHHhcCCCEEEEeccCCCCCCchHH
Q 030509 22 GRFLGLDVGDKY-----VGLSISDPKNKIASPLSVLL-R--KKNTIDLMAEDFRSLISEFNLEGFIVGYPFNRQQNAADA 93 (176)
Q Consensus 22 ~~iLglD~G~kr-----iGvAvsd~~~~~a~Pl~~i~-~--~~~~~~~~~~~L~~li~e~~~~~iVVGlPl~dG~~s~~~ 93 (176)
.++||||+|.+. |-+|+.|..|.+..- .+|. . .........+.|.+++..++|+.|+|| +|+. +..
T Consensus 516 ~~VlaldpG~r~~g~~g~k~a~vD~~G~vl~~-~~i~~~~~~~~~~~~a~~~l~~li~~~~~~vIaIG----n~sr-et~ 589 (1219)
T 3psi_A 516 PKILSLTCGQGRFGADAIIAVYVNRKGDFIRD-YKIVDNPFDKTNPEKFEDTLDNIIQSCQPNAIGIN----GPNP-KTQ 589 (1219)
T ss_dssp CCEEEEECTTCCTTTTCEEEEEECTTSCEEEE-EEECSCTTCSSCSHHHHHHHHHHHHHHCCSEEEEC----CSST-HHH
T ss_pred CeEEEecCCCCCCCCCceEEEEECCCCCEEEE-EEEcCCCCChhhHHHHHHHHHHHHHHcCCcEEEEC----CCCH-HHH
Confidence 489999999873 677999999876542 3442 1 111222335889999999999999999 6642 222
Q ss_pred HHHHHHHHHHHhcc----CCCCCcEEEecCccc
Q 030509 94 VQVKLFIDDLSATK----KLEDMKYAYWNEGFT 122 (176)
Q Consensus 94 ~~v~~Fa~~L~~~~----~~~~lpV~~~DEr~T 122 (176)
+.++...+.+.+.. ...+++|+++||..-
T Consensus 590 ~l~~~l~~~i~~~~~~~~~~~~i~vviV~e~gA 622 (1219)
T 3psi_A 590 KFYKRLQEVLHKKQIVDSRGHTIPIIYVEDEVA 622 (1219)
T ss_dssp HHHHHHHHHHHHTTCBCSSSCBCCEEECCCTTH
T ss_pred HHHHHHHHHHHhhccccccCCCccEEEECchHH
Confidence 22223333333210 012689999999983
No 9
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10
Probab=95.37 E-value=0.049 Score=44.35 Aligned_cols=100 Identities=13% Similarity=0.136 Sum_probs=65.9
Q ss_pred CeEEEEecCCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHHHHHhcCCCEEEEeccCC-C---CCCc--hH---
Q 030509 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN-R---QQNA--AD--- 92 (176)
Q Consensus 22 ~~iLglD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~e~~~~~iVVGlPl~-d---G~~s--~~--- 92 (176)
|.++|+|+|..+|=+++.|..+.+..- ..++.. .+.+.+++.|.+++++.++.+|.||.|=. | |... +.
T Consensus 4 m~~lgidiggt~i~~~l~d~~g~il~~-~~~~~~-~~~~~~~~~i~~~i~~~~i~gigi~~pG~vd~~~g~v~~~~~~~~ 81 (292)
T 2gup_A 4 MTIATIDIGGTGIKFASLTPDGKILDK-TSISTP-ENLEDLLAWLDQRLSEQDYSGIAMSVPGAVNQETGVIDGFSAVPY 81 (292)
T ss_dssp CCEEEEEEETTEEEEEEECTTCCEEEE-EEECCC-SSHHHHHHHHHHHHTTSCCSEEEEEESSEECTTTCBEESCCSSGG
T ss_pred cEEEEEEECCCEEEEEEECCCCCEEEE-EEEeCC-CCHHHHHHHHHHHHHhCCCcEEEEEecCcccCCCCEEEecCCCCc
Confidence 569999999999999999977654321 223322 34456678889988877899999999854 3 3211 10
Q ss_pred HHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHH
Q 030509 93 AVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVEL 128 (176)
Q Consensus 93 ~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~ 128 (176)
... ..+.+.| +. + ++||++.+.--...-|+.
T Consensus 82 ~~~-~~l~~~l-~~--~-~~pv~v~NDa~aaa~~e~ 112 (292)
T 2gup_A 82 IHG-FSWYEAL-SS--Y-QLPVHLENDANCVGLSEL 112 (292)
T ss_dssp GSS-SBHHHHT-GG--G-CCCEEEEEHHHHHHHHHH
T ss_pred ccC-CCHHHHH-HH--c-CCCEEEechHHHHHHHHH
Confidence 001 1456677 53 5 789988877665555543
No 10
>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus}
Probab=95.06 E-value=0.081 Score=43.71 Aligned_cols=104 Identities=17% Similarity=0.111 Sum_probs=65.2
Q ss_pred CeEEEEecCCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHHHHHh------cCCCEEEEeccCC-CCCCchH--
Q 030509 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISE------FNLEGFIVGYPFN-RQQNAAD-- 92 (176)
Q Consensus 22 ~~iLglD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~e------~~~~~iVVGlPl~-dG~~s~~-- 92 (176)
|.++|+|+|..+|-+++.|..+.+.+ ..++......+.+++.|.+++++ .++.+|.||.|=. |...+..
T Consensus 1 M~~lgiDiGgt~i~~~l~d~~~~l~~--~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~i~gigi~~pG~vd~~~g~v~~ 78 (302)
T 3vov_A 1 MKVVGLDLGGTKIAAGVFDGKRLLSK--VVVPTPKEGGERVAEALAEAAERAEREAGVRGEAIGLGTPGPLDFRRGVIRF 78 (302)
T ss_dssp CCEEEEEECSSEEEEEEECSSSBSCC--EEEECCSSCHHHHHHHHHHHHHHHHHHHTCCCSSEEEEESSCEETTTTEEC-
T ss_pred CEEEEEEEcCCEEEEEEEeCCCcEEE--EEEcCCCCChHHHHHHHHHHHHHHHhhccCCceEEEEEecccEeCCCCEEEc
Confidence 36899999999999999998755532 34443333324456666666543 5799999999855 4221100
Q ss_pred HHHH-----HHHHHHHHhccCCCCCcEEEecCcccHHHHHHHh
Q 030509 93 AVQV-----KLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLL 130 (176)
Q Consensus 93 ~~~v-----~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l 130 (176)
+... ..+.+.|++. + ++||++.+.--...-|+..+
T Consensus 79 ~~~~~~w~~~~l~~~l~~~--~-~~pv~v~NDa~aaal~E~~~ 118 (302)
T 3vov_A 79 APNIPGVQDFPIRRILEEA--T-GRPVFLENDANAAALAEHHL 118 (302)
T ss_dssp --CCTTCTTCCHHHHHHHH--H-SSCEEEEEHHHHHHHHHHHH
T ss_pred CCCCCCcCCCChHHHHHHh--h-CCCEEEEechHHHHHHHHHh
Confidence 0000 1345667663 4 78999888776666666544
No 11
>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*
Probab=94.62 E-value=0.23 Score=40.42 Aligned_cols=97 Identities=11% Similarity=0.008 Sum_probs=61.8
Q ss_pred CeEEEEecCCCeEEEEEecCCCceeccceeeeCCC---CChhhHHHHHHHHHHhc---CCCEEEEeccCCCCCCchHHHH
Q 030509 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKK---NTIDLMAEDFRSLISEF---NLEGFIVGYPFNRQQNAADAVQ 95 (176)
Q Consensus 22 ~~iLglD~G~kriGvAvsd~~~~~a~Pl~~i~~~~---~~~~~~~~~L~~li~e~---~~~~iVVGlPl~dG~~s~~~~~ 95 (176)
|.++|+|.|..+|=+++.|..+.+..- ...+..+ .+++.+++.|.+.+++. .+.++.||.|=. ...+.
T Consensus 2 M~~lgiDiGgt~~~~~l~d~~g~i~~~-~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~igi~~~G~-~~~~~---- 75 (299)
T 2e2o_A 2 MIIVGVDAGGTKTKAVAYDCEGNFIGE-GSSGPGNYHNVGLTRAIENIKEAVKIAAKGEADVVGMGVAGL-DSKFD---- 75 (299)
T ss_dssp CCEEEEEECSSCEEEEEECTTSCEEEE-EEESCCCHHHHCHHHHHHHHHHHHHHHHTSCCSEEEEEETTC-CSHHH----
T ss_pred eEEEEEEeCCCcEEEEEEcCCCCEEEE-EeCCCCCcccCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCCC-CchhH----
Confidence 378999999999999999987654321 2233221 23445567777666553 278899998744 11111
Q ss_pred HHHHHHHHHhccCCCCCcEEEecCcccHHHHHH
Q 030509 96 VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVEL 128 (176)
Q Consensus 96 v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~ 128 (176)
+..+.+.|++ + ++||++.+.--....|+.
T Consensus 76 ~~~l~~~l~~---~-~~pv~v~ND~~aaa~~e~ 104 (299)
T 2e2o_A 76 WENFTPLASL---I-APKVIIQHDGVIALFAET 104 (299)
T ss_dssp HHHHHHHHTT---S-SSEEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHh---C-CCCEEEeCcHHHHHhhcc
Confidence 1356666764 3 689999887666555554
No 12
>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A*
Probab=94.58 E-value=0.17 Score=41.93 Aligned_cols=96 Identities=13% Similarity=0.168 Sum_probs=60.2
Q ss_pred CeEEEEecCCCeEEEEEecCCCceeccceeeeCCC---CChhhHHHHHHHHHHhc----------CCCEEEEeccCC-CC
Q 030509 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKK---NTIDLMAEDFRSLISEF----------NLEGFIVGYPFN-RQ 87 (176)
Q Consensus 22 ~~iLglD~G~kriGvAvsd~~~~~a~Pl~~i~~~~---~~~~~~~~~L~~li~e~----------~~~~iVVGlPl~-dG 87 (176)
+.++|||.|..+|=+++.|..+.+..- ...+..+ .+.+.+++.|.+.+++. ++.+|.||.|=. |.
T Consensus 6 ~~~lgiDiGgt~~~~~l~d~~g~i~~~-~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~i~gigi~~pG~vd~ 84 (347)
T 2ch5_A 6 AIYGGVEGGGTRSEVLLVSEDGKILAE-ADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQE 84 (347)
T ss_dssp CEEEEEEECTTCEEEEEEETTSCEEEE-EEECCCCHHHHCHHHHHHHHHHHHHHHHHHHTCCTTCCBSEEEEEETTTTCH
T ss_pred eEEEEEEcCccceEEEEEeCCCCEEEE-EeCCCCCcccCCHHHHHHHHHHHHHHHHHhcCCCcccceeEEEEeccCCCch
Confidence 479999999999999999977654321 2221111 13334456665555431 578899998755 32
Q ss_pred CCchHHHHHHHHHHHHHhccCCC--CCcEEEecCcccHHHH
Q 030509 88 QNAADAVQVKLFIDDLSATKKLE--DMKYAYWNEGFTSKGV 126 (176)
Q Consensus 88 ~~s~~~~~v~~Fa~~L~~~~~~~--~lpV~~~DEr~TT~~A 126 (176)
. .-..+.+.|++. ++ .+||++.+.--....|
T Consensus 85 ~------~~~~l~~~l~~~--~~~~~~pv~v~NDa~aaa~a 117 (347)
T 2ch5_A 85 D------AGRILIEELRDR--FPYLSESYLITTDAAGSIAT 117 (347)
T ss_dssp H------HHHHHHHHHHHH--CTTSBSCEEEEEHHHHHHHH
T ss_pred H------HHHHHHHHHHHh--cCCCCceEEEECcHHHHHHh
Confidence 2 123566777763 53 3899998876655555
No 13
>3epq_A Putative fructokinase; SCRK, ADP binding, PSI2, MCSG, structural GENO protein structure initiative, midwest center for structural genomics; HET: MLY MSE MLZ ADP; 1.66A {Bacillus subtilis} PDB: 1xc3_A 3ohr_A* 3lm9_A*
Probab=94.32 E-value=0.15 Score=42.23 Aligned_cols=102 Identities=12% Similarity=0.134 Sum_probs=69.5
Q ss_pred CeEEEEecCCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHHHHHhcCCCEEEEeccCC-CCCC----------c
Q 030509 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN-RQQN----------A 90 (176)
Q Consensus 22 ~~iLglD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~e~~~~~iVVGlPl~-dG~~----------s 90 (176)
+.++|+|+|..+|=+|+.|..+.+..- ..++.. +++.+++.+.+.+++.++.+|-||.|=. |... +
T Consensus 3 ~~~lgiDiGgt~i~~~l~d~~G~il~~-~~~~t~--~~~~~l~~i~~~~~~~~i~gigi~~pG~vd~~~~~~~~G~i~~~ 79 (302)
T 3epq_A 3 AMLGGIEAGGTXFVCAVGREDGTIIDR-IEFPTX--MPDETIEXVIQYFSQFSLQAIGIGSFGPVDNDXTSQTYGTITAT 79 (302)
T ss_dssp CCEEEEEECSSEEEEEEECTTSCEEEE-EEEECC--CHHHHHHHHHHHHTTSCCSEEEEEECSSEECCTTSTTTTEECCC
T ss_pred cEEEEEEECcceeEEEEEECCCcEEEE-EEecCC--ChHHHHHHHHHHhccCCceEEEEEeceeeccccccccccEEecC
Confidence 568999999999999999987765432 344433 3445678888888888999999999854 3211 1
Q ss_pred h--HHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHh
Q 030509 91 A--DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLL 130 (176)
Q Consensus 91 ~--~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l 130 (176)
+ .... ..+.+.|++. + ++||++.+.--...-|+.++
T Consensus 80 ~~~~w~~-~~l~~~l~~~--~-~~pV~v~NDanaaalaE~~~ 117 (302)
T 3epq_A 80 PXAGWRH-YPFLQTVXNE--M-XIPVGFSTDVNAAALGEFLF 117 (302)
T ss_dssp SSTTTBT-CCHHHHHHHH--H-CSCEEEEEHHHHHHHHHHHH
T ss_pred CCCCccC-CChHHHHHHH--h-CCCEEEechhHHHHHHHHHh
Confidence 1 0010 1356677763 4 78998888776666666554
No 14
>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes}
Probab=93.90 E-value=0.25 Score=40.57 Aligned_cols=104 Identities=14% Similarity=0.114 Sum_probs=67.6
Q ss_pred CeEEEEecCCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHHHHHh-cCCCEEEEeccCC-C---CCCc--hH--
Q 030509 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISE-FNLEGFIVGYPFN-R---QQNA--AD-- 92 (176)
Q Consensus 22 ~~iLglD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~e-~~~~~iVVGlPl~-d---G~~s--~~-- 92 (176)
|.++|+|+|..+|=+++.|..+.+..- ..++....+.+.+++.+.+.+.+ .++.+|.||.|=. | |... +.
T Consensus 4 m~~lgiDiGgt~i~~~l~d~~G~il~~-~~~~~~~~~~~~~~~~i~~~~~~~~~i~gigi~~pG~vd~~~g~v~~~~~l~ 82 (297)
T 4htl_A 4 MKIAAFDIGGTALKMGVVLPHGEIILT-KSAEISGSDGDQILAEMKVFLAENTDVTGIAVSAPGYVNPKTGLITMGGAIR 82 (297)
T ss_dssp CCEEEEEECSSEEEEEEECTTSCEEEE-EEEECSTTCHHHHHHHHHHHHHTCTTCCEEEEEESSEECTTTCEEEECTTCG
T ss_pred cEEEEEEeCCCeEEEEEECCCCCEEEE-EEecCCCCCHHHHHHHHHHHHhhcCCeeEEEEecCcceeCCCCEEEeCCCCC
Confidence 579999999999999999987765432 23333333345567777777765 4689999999854 4 3211 10
Q ss_pred -HHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHh
Q 030509 93 -AVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLL 130 (176)
Q Consensus 93 -~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l 130 (176)
... ..+.+.|++. + ++||++.+.--...-|+..+
T Consensus 83 ~w~~-~~l~~~l~~~--~-~~pV~v~NDa~aaal~E~~~ 117 (297)
T 4htl_A 83 RFDN-FNLKEWLEAE--T-GLPVAIENDANCALLAEKWL 117 (297)
T ss_dssp GGTT-EEHHHHHHHH--H-CSCEEEEEHHHHHHHHHHHH
T ss_pred CccC-CCHHHHHHHH--H-CcCEEEecHHHHHHHHHHHh
Confidence 111 1355667763 4 78998888766665565544
No 15
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*
Probab=93.84 E-value=0.2 Score=41.50 Aligned_cols=104 Identities=13% Similarity=0.174 Sum_probs=64.5
Q ss_pred CeEEEEecCCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHHHHH----hcCCCEEEEeccCC-CCCCchH----
Q 030509 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLIS----EFNLEGFIVGYPFN-RQQNAAD---- 92 (176)
Q Consensus 22 ~~iLglD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~----e~~~~~iVVGlPl~-dG~~s~~---- 92 (176)
+.++|+|+|..+|=+++.|..+.+..- ..++.. .+++.+++.|.+.++ ++++.+|.||.|=. |...+..
T Consensus 2 ~~~lgiDiGgt~i~~~l~d~~G~i~~~-~~~~~~-~~~~~~~~~i~~~i~~~~~~~~i~gigi~~pG~vd~~~g~v~~~~ 79 (321)
T 3vgl_A 2 GLTIGVDIGGTKIAAGVVDEEGRILST-FKVATP-PTAEGIVDAICAAVAGASEGHDVEAVGIGAAGYVDDKRATVLFAP 79 (321)
T ss_dssp CEEEEEEECSSEEEEEEECTTCCBCCC-EEEECC-SSHHHHHHHHHHHHHHHHTTCCEEEEEEEESSEECTTSSCEEECS
T ss_pred cEEEEEEECCCEEEEEEECCCCCEEEE-EEeeCC-CCHHHHHHHHHHHHHHHHhhcCceEEEEeccccEeCCCCEEEeCC
Confidence 568999999999999999987754432 233332 334455666665554 45789999999854 3221100
Q ss_pred -HH-HHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHh
Q 030509 93 -AV-QVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLL 130 (176)
Q Consensus 93 -~~-~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l 130 (176)
.. .-..+.+.|++. + ++||++.+.--...-|+..+
T Consensus 80 ~l~w~~~~l~~~l~~~--~-~~pv~v~NDa~aaal~E~~~ 116 (321)
T 3vgl_A 80 NIDWRHEPLKDKVEQR--V-GLPVVVENDANAAAWGEYRF 116 (321)
T ss_dssp SSCCEEECHHHHHHHH--H-CSCEEEEEHHHHHHHHHHHH
T ss_pred CCCCcCCCHHHHHhhh--h-CCCEEEEehhhhHHHHHHHh
Confidence 00 001345566663 4 78999888776666665544
No 16
>3mcp_A Glucokinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; 3.00A {Parabacteroides distasonis}
Probab=93.74 E-value=0.32 Score=41.78 Aligned_cols=108 Identities=14% Similarity=0.008 Sum_probs=69.1
Q ss_pred CCCCeEEEEecCCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHH---HHHhc---CCCEEEEeccCC-C---CC
Q 030509 19 SKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRS---LISEF---NLEGFIVGYPFN-R---QQ 88 (176)
Q Consensus 19 ~~~~~iLglD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~---li~e~---~~~~iVVGlPl~-d---G~ 88 (176)
+....++|+|+|..++-+++.| .+.+..-...++....+++.+++.|.+ .+++. ++.+|.||.|=. | |.
T Consensus 6 ~d~~~~lgiDIGgt~i~~~l~d-~G~il~~~~~~~~~~~~~~~~l~~i~~~~~~i~~~~~~~i~gIGIavPG~Vd~~~G~ 84 (366)
T 3mcp_A 6 NDNRIVMTLDAGGTNFVFSAIQ-GGKEIADPVVLPACADCLDKCLGNLVEGFKAIQAGLPEAPVAISFAFPGPADYQAGI 84 (366)
T ss_dssp TCCCEEEEEECSSSEEEEEEEE-TTEECSCCEEEECCTTCHHHHHHHHHHHHHHHHTTCSSCCCEEEEECCSSEETTTTE
T ss_pred CCCCEEEEEEECcceEEEEEEE-CCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhhcCCeEEEEEecceEeCCCCE
Confidence 3567899999999999999999 765543221444433355566788888 77664 799999999854 4 32
Q ss_pred C--chHHHHH---HHHHHHHHhccCCCCCcEEEecCcccHHHHHHHh
Q 030509 89 N--AADAVQV---KLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLL 130 (176)
Q Consensus 89 ~--s~~~~~v---~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l 130 (176)
. ++..... ..+.+.|++. | ++||++.+.--...-|+..+
T Consensus 85 i~~~~nlp~w~~~~~l~~~L~~~--~-g~PV~veNDanaaAlgE~~~ 128 (366)
T 3mcp_A 85 IGDLPNFPSFRGGVALGPFLEDI--F-GIPVFINNDGSLFAYGEALT 128 (366)
T ss_dssp ECCCTTCGGGTTCBCHHHHHHHH--H-CSCEEEECHHHHHHHHHHHT
T ss_pred EEeCCCcccccCCCCHHHHHHHH--H-CCCEEEechhhHHHHHHHHh
Confidence 1 1110001 1455667763 4 78988887765555555443
No 17
>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A*
Probab=93.63 E-value=0.4 Score=41.06 Aligned_cols=93 Identities=14% Similarity=0.130 Sum_probs=55.8
Q ss_pred CeEEEEecCCCeEEEEEecCCCceeccceeeeCCC-----C--ChhhH---HHHHHHHHHhc-----CCCEEEEeccC--
Q 030509 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKK-----N--TIDLM---AEDFRSLISEF-----NLEGFIVGYPF-- 84 (176)
Q Consensus 22 ~~iLglD~G~kriGvAvsd~~~~~a~Pl~~i~~~~-----~--~~~~~---~~~L~~li~e~-----~~~~iVVGlPl-- 84 (176)
+.+||||+|..+|=+|+.|....+++ ..++... . -.+.+ .+.+.+++.+. ++.+| ||.|=
T Consensus 2 ~~vlgidiGgt~ik~al~d~~~il~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~gI-i~~pG~v 78 (381)
T 1saz_A 2 FRILTINPGSTSTKLSIFEDERMVKM--QNFSHSPDELGRFQKILDQLEFREKIARQFVEETGYSLSSFSAF-VSRGGLL 78 (381)
T ss_dssp CEEEEEEECSSEEEEEEEETTEEEEE--EEEECCHHHHHTCSSGGGGHHHHHHHHHHHHHTTTCCGGGCSEE-EEECCSC
T ss_pred CeEEEEECCccceeEEEEecchheee--eecccCcccccchhhHHHHHHHHHHHHHHHHHHcCCCccCceEE-EecCCCC
Confidence 46999999999999999996533332 2233211 0 01222 45666777654 58899 99873
Q ss_pred C--CCCC-----------------c-hHHHHHHHHHHHHHhccCCCCCcEEEecCcc
Q 030509 85 N--RQQN-----------------A-ADAVQVKLFIDDLSATKKLEDMKYAYWNEGF 121 (176)
Q Consensus 85 ~--dG~~-----------------s-~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~ 121 (176)
+ .|.. . +..-. -.+++.|++. + ++|+++.|.-.
T Consensus 79 d~~~G~~~~i~~~~~~~l~~~~~~~~~~nl~-~~l~~~l~~~--~-~~Pv~v~NDan 131 (381)
T 1saz_A 79 DPIPGGVYLVDGLMIKTLKSGKNGEHASNLG-AIIAHRFSSE--T-GVPAYVVDPVV 131 (381)
T ss_dssp SCBCSSEEECCHHHHHHHHHTTTCCCTTHHH-HHHHHHHHHH--H-CCCEEEESCTT
T ss_pred CCCCCceEecCHHHHHHHHhcccccChhhhh-HHHHHHHHHh--c-CCCEEEeCCCc
Confidence 2 3543 1 11111 2456667663 4 89998877665
No 18
>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp}
Probab=93.44 E-value=0.69 Score=38.13 Aligned_cols=58 Identities=19% Similarity=0.146 Sum_probs=40.7
Q ss_pred CeEEEEecCCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHHHHHhcC-----CCEEEEe
Q 030509 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFN-----LEGFIVG 81 (176)
Q Consensus 22 ~~iLglD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~e~~-----~~~iVVG 81 (176)
+++|+||+|..+|=+|+-|......+ ..++......+++...|..+++++. +++++|+
T Consensus 2 ~MlL~IDIGNT~iK~gl~d~~~l~~~--~r~~T~~~t~de~~~~l~~ll~~~~~~~~~I~~iiIS 64 (266)
T 3djc_A 2 SLILCIDVGNSHIYGGVFDGDEIKLR--FRHTSKVSTSDELGIFLKSVLRENNCSPETIRKIAIC 64 (266)
T ss_dssp -CEEEEEECSSEEEEEEEETTEEEEE--EEEECSCCCHHHHHHHHHHHHHTTTCCGGGCCEEEEE
T ss_pred ceEEEEEECCCeEEEEEEECCEEEEE--EEecCCCCCHHHHHHHHHHHHHHcCCChhhceEEEEe
Confidence 46999999999999999987543322 2333332334556677888888765 8899999
No 19
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}
Probab=93.30 E-value=0.19 Score=41.17 Aligned_cols=105 Identities=12% Similarity=0.151 Sum_probs=61.2
Q ss_pred CeEEEEecCCCeEEEEEecCCCceeccceeeeCCC-CChhhHHHHHHHHH----Hhc-----CCCEEEEeccCC-C---C
Q 030509 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKK-NTIDLMAEDFRSLI----SEF-----NLEGFIVGYPFN-R---Q 87 (176)
Q Consensus 22 ~~iLglD~G~kriGvAvsd~~~~~a~Pl~~i~~~~-~~~~~~~~~L~~li----~e~-----~~~~iVVGlPl~-d---G 87 (176)
..++|||+|..+|=+++.|..+.+..- ..++... .+.+.+++.|.+.+ ++. ++.+|.||.|=. | |
T Consensus 6 ~~~lgiDiggt~~~~~l~d~~g~il~~-~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~igi~~pG~vd~~~g 84 (326)
T 2qm1_A 6 KKIIGIDLGGTTIKFAILTTDGVVQQK-WSIETNILEDGKHIVPSIIESIRHRIDLYNMKKEDFVGIGMGTPGSVDIEKG 84 (326)
T ss_dssp CEEEEEEECSSEEEEEEEETTCCEEEE-EEEECCCTTTTTTHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESSEEETTTT
T ss_pred cEEEEEEECCCEEEEEEECCCCCEEEE-EEEcCCCCCCHHHHHHHHHHHHHHHHHHcCCCccceeEEEEecccceeCCCC
Confidence 579999999999999999987654321 2333221 22233445554444 433 467888999854 3 3
Q ss_pred CC--chHHH-HHH-HHHHHHHhccCCCCCcEEEecCcccHHHHHHHh
Q 030509 88 QN--AADAV-QVK-LFIDDLSATKKLEDMKYAYWNEGFTSKGVELLL 130 (176)
Q Consensus 88 ~~--s~~~~-~v~-~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l 130 (176)
.. ++... .-. .+.+.|++. + ++||++.+.--....|+..+
T Consensus 85 ~v~~~~~l~w~~~~~l~~~l~~~--~-~~pv~v~ND~~aaa~~e~~~ 128 (326)
T 2qm1_A 85 TVVGAYNLNWTTVQPVKEQIESA--L-GIPFALDNDANVAALGERWK 128 (326)
T ss_dssp EEECBGGGTBCSCBCHHHHHHHH--H-CSCEEEEEHHHHHHHHHHHH
T ss_pred EEEecCCCCccCCchHHHHHHHH--h-CCCEEEecHHHHHHHHHHHh
Confidence 21 11000 001 345666663 4 78999888776666665443
No 20
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10
Probab=93.19 E-value=0.31 Score=39.33 Aligned_cols=103 Identities=12% Similarity=0.169 Sum_probs=65.4
Q ss_pred eEEEEecCCCeEEEEEecCCCceeccceeeeCCC-CChhhHHHHHHHHHHhc--CCCEEEEeccCC-CCCC-----chH-
Q 030509 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKK-NTIDLMAEDFRSLISEF--NLEGFIVGYPFN-RQQN-----AAD- 92 (176)
Q Consensus 23 ~iLglD~G~kriGvAvsd~~~~~a~Pl~~i~~~~-~~~~~~~~~L~~li~e~--~~~~iVVGlPl~-dG~~-----s~~- 92 (176)
.++|+|+|..+|=+++.|..+.+..- ..++... .+.+.+++.|.+++++. ++.+|.||.|=. |... ++.
T Consensus 2 ~~lgidiggt~~~~~l~d~~g~il~~-~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~igi~~pG~vd~~~g~v~~~~~~ 80 (289)
T 2aa4_A 2 TTLAIDIGGTKLAAALIGADGQIRDR-RELPTPASQTPEALRDALSALVSPLQAHAQRVAIASTGIIRDGSLLALNPHNL 80 (289)
T ss_dssp CEEEEEECSSEEEEEEECTTCCEEEE-EEEECCSSCCHHHHHHHHHHHHTTTGGGCSEEEEEESSEEETTEEECSSGGGG
T ss_pred eEEEEEeCCCEEEEEEECCCCCEEEE-EEecCCCCCCHHHHHHHHHHHHHHHHhhCCEEEEEeccceeCCCCEEEeCCCC
Confidence 58999999999999999977654321 2333322 23456678888888764 467899999854 3221 111
Q ss_pred --HHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHh
Q 030509 93 --AVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLL 130 (176)
Q Consensus 93 --~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l 130 (176)
... ..+.+.|++. + ++||++.+.--....|+..+
T Consensus 81 ~~w~~-~~l~~~l~~~--~-~~pv~v~NDa~aaa~~e~~~ 116 (289)
T 2aa4_A 81 GGLLH-FPLVKTLEQL--T-NLPTIAINDAQAAAWAEFQA 116 (289)
T ss_dssp GGGTT-CCHHHHHHHH--H-CSCEEEEEHHHHHHHHHHHT
T ss_pred CcccC-CChHHHHHHH--H-CCCEEEechHHHHHHHHHHh
Confidence 110 1355667663 4 78998888766666665443
No 21
>3r6m_A YEAZ, resuscitation promoting factor; actin/HSP70 nucleotide-binding fold, bacterial resuscitation BUT non-culturable state, Y YJEE; 3.10A {Vibrio parahaemolyticus}
Probab=93.01 E-value=1.5 Score=35.02 Aligned_cols=88 Identities=10% Similarity=0.087 Sum_probs=59.3
Q ss_pred CeEEEEecCCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHHHHHhc-----CCCEEEEeccCCCCCCchHHHHH
Q 030509 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEF-----NLEGFIVGYPFNRQQNAADAVQV 96 (176)
Q Consensus 22 ~~iLglD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~e~-----~~~~iVVGlPl~dG~~s~~~~~v 96 (176)
|++||||--+..+++|+.+....++. .....+ ...+.+...|.+++++. +++.|+|+.= -|+.+ -.+-.
T Consensus 2 M~iLaIdTS~~~~svAl~~~~~~~~~-~~~~~~--~Hs~~L~p~i~~~L~~a~~~~~dld~Iav~~G--PGsfT-glRig 75 (213)
T 3r6m_A 2 AKILAIDTATENCSVALLVNDQVISR-SEVAPR--DHTKKVLPMVDEVLKEAGLTLQDLDALAFGRG--PGSFT-GVRIG 75 (213)
T ss_dssp CCEEEEECSSSEEEEEEESSSCEEEE-EEECCS--CCHHHHHHHHHHHHHTTTCCTTTCSEEEEEEE--SSCHH-HHHHH
T ss_pred CEEEEEEccCcceEEEEEECCEEEEE-EEechH--HHHHHHHHHHHHHHHHcCCCHHHccEEEEecC--CCchh-hHHHH
Confidence 78999999999999999987554444 222222 22334567788888764 6899999820 35554 23344
Q ss_pred HHHHHHHHhccCCCCCcEEEec
Q 030509 97 KLFIDDLSATKKLEDMKYAYWN 118 (176)
Q Consensus 97 ~~Fa~~L~~~~~~~~lpV~~~D 118 (176)
-.+++-|... + ++|++=++
T Consensus 76 ~~~AkgLa~~--~-~iPl~gVs 94 (213)
T 3r6m_A 76 IGIAQGLAFG--A-ELPMIGVS 94 (213)
T ss_dssp HHHHHHHHHH--T-TCCEEEEE
T ss_pred HHHHHHHHHH--h-CCCEEEEc
Confidence 6788888863 3 78988774
No 22
>3lm2_A Putative kinase; structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2, transf; HET: MSE; 1.70A {Agrobacterium tumefaciens}
Probab=92.37 E-value=0.29 Score=39.34 Aligned_cols=61 Identities=15% Similarity=0.190 Sum_probs=43.1
Q ss_pred CCCeEEEEecCCCeEEEEEecCCCceeccceeeeCC-CCChhhHHHHHHHHHHhcCCCEEEEeccCC
Q 030509 20 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRK-KNTIDLMAEDFRSLISEFNLEGFIVGYPFN 85 (176)
Q Consensus 20 ~~~~iLglD~G~kriGvAvsd~~~~~a~Pl~~i~~~-~~~~~~~~~~L~~li~e~~~~~iVVGlPl~ 85 (176)
..+.++|+|+|..+|=+ .|..+.+ ...++.. ..+++.+.+.|.++++++++.+|-||.|=.
T Consensus 4 ~~~~~lgiDIGGT~i~~--~d~~g~~---~~~~~t~~~~~~~~~~~~i~~~i~~~~i~gigi~~pG~ 65 (226)
T 3lm2_A 4 EDQTVLAIDIGGSHVKI--GLSTDGE---ERKVESGKTMTGPEMVAAVTAMAKDMTYDVIAMGYPGP 65 (226)
T ss_dssp GGCCEEEEEECSSEEEE--EETTTCC---EEEEECCTTCCHHHHHHHHHHHTTTCCCSEEEEEESSC
T ss_pred cCCEEEEEEECCCEEEE--EECCCCE---EEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEeE
Confidence 34679999999998874 4554443 1223322 234556788899999988999999999855
No 23
>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10
Probab=92.10 E-value=0.54 Score=38.75 Aligned_cols=104 Identities=18% Similarity=0.172 Sum_probs=64.1
Q ss_pred CCeEEEEecCCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHHHHHhc-----CCCEEEEeccCC-C---CCCc-
Q 030509 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEF-----NLEGFIVGYPFN-R---QQNA- 90 (176)
Q Consensus 21 ~~~iLglD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~e~-----~~~~iVVGlPl~-d---G~~s- 90 (176)
.+.++|+|+|..+|=+++.|..+.+..- ..++....+.+.+++.|.+++++. .+.+|.||.|=. | |...
T Consensus 23 ~~~~lgiDiGgt~i~~~l~d~~g~il~~-~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~i~~igi~~pG~vd~~~g~v~~ 101 (327)
T 2ap1_A 23 NAMYYGFDIGGTKIALGVFDSTRRLQWE-KRVPTPHTSYSAFLDAVCELVEEADQRFGVKGSVGIGIPGMPETEDGTLYA 101 (327)
T ss_dssp CCEEEEEEECSSEEEEEEEETTCCEEEE-EEEECCCSCHHHHHHHHHHHHHHHHHHHTSCCEEEEEESSBSCCTTSCCBC
T ss_pred CceEEEEEECCCEEEEEEEeCCCCEEEE-EEecCCCCCHHHHHHHHHHHHHHHHHhcCCccEEEEEeeeeEECCCCEEEc
Confidence 3569999999999999999987654321 233332223445567777766543 378899999844 3 3221
Q ss_pred ---hHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHH
Q 030509 91 ---ADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELL 129 (176)
Q Consensus 91 ---~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~ 129 (176)
+.... ..+.+.|++. + ++||++.+.--...-|+..
T Consensus 102 ~~~~~~~~-~~l~~~l~~~--~-~~pv~v~NDa~aaalgE~~ 139 (327)
T 2ap1_A 102 ANVPAASG-KPLRADLSAR--L-DRDVRLDNDANCFALSEAW 139 (327)
T ss_dssp TTCTTTTT-SCHHHHHHHH--H-TSCEEEEEHHHHHHHHHHT
T ss_pred cCCCccCC-CChHHHHHHH--H-CCCEEEecHHHHHHHHHHH
Confidence 11110 1345566653 4 6898888877666656543
No 24
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=92.10 E-value=0.51 Score=40.05 Aligned_cols=106 Identities=11% Similarity=0.013 Sum_probs=63.2
Q ss_pred CCeEEEEecCCCeEEEEEecCCCceeccceeeeCCCC-ChhhHHHHHHHHHHh---------cCCCEEEEeccCC-C---
Q 030509 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKN-TIDLMAEDFRSLISE---------FNLEGFIVGYPFN-R--- 86 (176)
Q Consensus 21 ~~~iLglD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~-~~~~~~~~L~~li~e---------~~~~~iVVGlPl~-d--- 86 (176)
.+.++|||+|..+|=+++.|..+.+..- ..++.... +++.+++.|.+.+++ .++.+|.||.|=. |
T Consensus 86 ~~~~lGIDiGgt~i~~~l~d~~G~vl~~-~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gigi~~pG~vd~~~ 164 (380)
T 2hoe_A 86 CAYVLGIEVTRDEIAACLIDASMNILAH-EAHPLPSQSDREETLNVMYRIIDRAKDMMEKLGSKLSALTVAAPGPIDTER 164 (380)
T ss_dssp GCEEEEEEECSSEEEEEEEETTCCEEEE-EEEECCSSCCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEESSCEETTT
T ss_pred CCeEEEEEECCCEEEEEEECCCCCEEEE-EEEccCCCCCHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEEEeeccEECCC
Confidence 4678999999999999999987654321 23332221 333445555544433 3688999999865 4
Q ss_pred CCCc--hHHH-HHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHh
Q 030509 87 QQNA--ADAV-QVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLL 130 (176)
Q Consensus 87 G~~s--~~~~-~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l 130 (176)
|... +... .=..+.+.|++. + ++||++.+.--...-|+..+
T Consensus 165 g~v~~~~~l~w~~~~l~~~l~~~--~-~~pV~v~NDanaaalaE~~~ 208 (380)
T 2hoe_A 165 GIIIDPRNFPLSQIPLANLLKEK--Y-GIEVWVENDADMGAVGEKWY 208 (380)
T ss_dssp TEECCCSSCTTBTSCHHHHHHHH--H-CSEEEEEEHHHHHHHHHHHH
T ss_pred CEEeccCCCCCcCCChHHHHHHH--h-CCCEEEechHHHHHHHHHHh
Confidence 3210 0000 001345667663 4 78999888766666665443
No 25
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus}
Probab=92.00 E-value=0.72 Score=38.32 Aligned_cols=103 Identities=17% Similarity=0.157 Sum_probs=64.4
Q ss_pred CeEEEEecCCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHHHHHhc-----CCCEEEEeccCC-C---CCCc--
Q 030509 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEF-----NLEGFIVGYPFN-R---QQNA-- 90 (176)
Q Consensus 22 ~~iLglD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~e~-----~~~~iVVGlPl~-d---G~~s-- 90 (176)
+.++|+|+|..+|=+++.|..+.+..- ..++....+.+.+++.|.+++++. .+.+|.||.|=. | |...
T Consensus 24 ~~~lgiDiGgt~i~~~l~d~~G~il~~-~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~gigi~~pG~vd~~~g~v~~~ 102 (327)
T 4db3_A 24 AMYYGFDVGGTKIEFGAFNEKLERVAT-ERVPTPTDDYPLLLETIAGLVAKYDQEFACEGKIGLGLPGMEDADDATVLTV 102 (327)
T ss_dssp CCEEEEEECSSEEEEEEECTTCCEEEE-EEEECCTTCHHHHHHHHHHHHHHHHHHHTSCCEEEEEESEEECTTTCCEEES
T ss_pred cEEEEEEECCCEEEEEEEeCCCcEEEE-EEecCCCCCHHHHHHHHHHHHHHHHHhcCCccEEEEEeeccEeCCCCEEEcC
Confidence 368999999999999999987755432 334443334455667777666542 467899999844 3 3211
Q ss_pred --hHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHH
Q 030509 91 --ADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELL 129 (176)
Q Consensus 91 --~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~ 129 (176)
+.... ..+.+.|++. + ++||++.+.--...-|+..
T Consensus 103 ~~~~~~~-~~l~~~l~~~--~-~~pV~v~NDa~aaalgE~~ 139 (327)
T 4db3_A 103 NVPAAKG-KPLRADLEAK--I-GRSVKIENDANCFALSEAW 139 (327)
T ss_dssp SSGGGTT-SCHHHHHHHH--H-SSCCEEEEHHHHHHHHHHT
T ss_pred CCccccC-CCHHHHHHHH--H-CCCEEEecchhHHHHHHHH
Confidence 01000 1345667663 4 7888888776666556554
No 26
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii}
Probab=91.73 E-value=0.28 Score=40.66 Aligned_cols=106 Identities=16% Similarity=0.204 Sum_probs=65.0
Q ss_pred CCCeEEEEecCCCeEEEEEecCCCceeccceeeeCC-CCChhhHHHHHHHHHHh-----cCCCEEEEeccCC-C---CCC
Q 030509 20 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRK-KNTIDLMAEDFRSLISE-----FNLEGFIVGYPFN-R---QQN 89 (176)
Q Consensus 20 ~~~~iLglD~G~kriGvAvsd~~~~~a~Pl~~i~~~-~~~~~~~~~~L~~li~e-----~~~~~iVVGlPl~-d---G~~ 89 (176)
....++|+|+|..+|=+++.|..+.+..- ..++.. ..+++.+++.|.+.+++ .++.+|.||.|=. | |..
T Consensus 17 ~~~~~lgidiggt~i~~~l~d~~g~il~~-~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~i~gigi~~pG~vd~~~g~v 95 (321)
T 3r8e_A 17 FQGMILGIDVGGTSVKFGLVTPEGEIQNA-TRFMTADWVNGIGFVESMKLEIGNFLKQYPIVKGVGIGWPGLVSLDRTKV 95 (321)
T ss_dssp --CCEEEEECCSSEEEEEEECTTCCEEEE-EEEEHHHHHTTTCHHHHHHHHHHHHHHHCTTCCEEEEEESSEECTTSCCE
T ss_pred cCcEEEEEEECCCEEEEEEEcCCCcEEEE-EEEeCCCCCCHHHHHHHHHHHHHHHHhccCCeeEEEEEecccEECCCCEE
Confidence 44779999999999999999987654432 233322 11223345666555543 5799999999844 4 321
Q ss_pred c--h----HHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHh
Q 030509 90 A--A----DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLL 130 (176)
Q Consensus 90 s--~----~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l 130 (176)
. + +.. ..+.+.|++. ++++||++.+.--...-|+..+
T Consensus 96 ~~~~~l~~w~~--~~l~~~l~~~--~~~~pV~v~NDa~aaalaE~~~ 138 (321)
T 3r8e_A 96 ILLPNIPSVVN--VPIVEILRSE--FPHIHFKIENDAKCAALGEYYF 138 (321)
T ss_dssp EEBTTBCCCCS--CCHHHHHHHH--CTTSEEEEEEHHHHHHHHHHHH
T ss_pred EeCCCCccccC--CCHHHHHHHH--cCCCCEEEEchHHHHHHHHHHh
Confidence 1 0 110 2455667763 4478999888766666665544
No 27
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=91.72 E-value=0.46 Score=40.55 Aligned_cols=105 Identities=11% Similarity=-0.010 Sum_probs=62.4
Q ss_pred CCCeEEEEecCCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHHHH----Hh-----cCCCEEEEeccCC-C---
Q 030509 20 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLI----SE-----FNLEGFIVGYPFN-R--- 86 (176)
Q Consensus 20 ~~~~iLglD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~li----~e-----~~~~~iVVGlPl~-d--- 86 (176)
..+.++|||+|..+|=+++.|..+.+..- ..++....+++.+++.+.+.+ ++ .++.+|.||.|=. |
T Consensus 83 ~~~~~lgiDiG~t~i~~~l~d~~G~il~~-~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gigi~~pG~vd~~~ 161 (406)
T 1z6r_A 83 EAWHYLSLRISRGEIFLALRDLSSKLVVE-ESQELALKDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTEN 161 (406)
T ss_dssp TTCEEEEEEEETTEEEEEEEETTCCEEEE-EEEECCSSCSSCHHHHHHHHHHHHHHHTGGGCCCEEEEEEEESSEEETTT
T ss_pred CccEEEEEEEcCCEEEEEEEcCCCCEEEE-EEecCCCCCHHHHHHHHHHHHHHHHHhcCCCcCceeEEEEEeecCEeCCC
Confidence 44679999999999999999987654321 222222222233455555444 33 2577888999854 3
Q ss_pred CCCc------hHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHh
Q 030509 87 QQNA------ADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLL 130 (176)
Q Consensus 87 G~~s------~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l 130 (176)
|... .+. . ..+.+.|++. + ++||++.+.--....|+..+
T Consensus 162 g~v~~~~~l~~w~-~-~~l~~~l~~~--~-~~pv~v~NDa~aaalaE~~~ 206 (406)
T 1z6r_A 162 GIVHRMPFYEDVK-E-MPLGEALEQH--T-GVPVYIQHDISAWTMAEALF 206 (406)
T ss_dssp TEEEECTTCTTCS-S-BCHHHHHHHH--H-SSCEEEEEHHHHHHHHHHHH
T ss_pred CEEecCCCCCCcc-C-CCHHHHHHHH--H-CCCEEEechhHHHHHHHHHh
Confidence 3111 111 0 1345667663 4 78999888766666666544
No 28
>1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET: BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10
Probab=91.61 E-value=0.75 Score=36.93 Aligned_cols=107 Identities=19% Similarity=0.111 Sum_probs=63.2
Q ss_pred CCCeEEEEecCCCeEEEEEecCC-CceeccceeeeCC-CCChhhHHHHHHHHHHhc--------CCCEEEEeccCC-C-C
Q 030509 20 KRGRFLGLDVGDKYVGLSISDPK-NKIASPLSVLLRK-KNTIDLMAEDFRSLISEF--------NLEGFIVGYPFN-R-Q 87 (176)
Q Consensus 20 ~~~~iLglD~G~kriGvAvsd~~-~~~a~Pl~~i~~~-~~~~~~~~~~L~~li~e~--------~~~~iVVGlPl~-d-G 87 (176)
..+.++|+|+|..+|=+++.|.. +.+..-...++.. ..+.+.+++.|.+++++. .+.+|.||.|=. | |
T Consensus 10 ~~~~~lgidiggt~i~~~l~dl~~g~i~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~igi~~pG~v~~g 89 (267)
T 1woq_A 10 KNAPLIGIDIGGTGIKGGIVDLKKGKLLGERFRVPTPQPATPESVAEAVALVVAELSARPEAPAAGSPVGVTFPGIIQHG 89 (267)
T ss_dssp -CCCEEEEEECSSEEEEEEEETTTTEEEEEEEEEECCSSCCHHHHHHHHHHHHHHHHTSTTCCCTTCCEEEEESSCEETT
T ss_pred CCCEEEEEEECCCEEEEEEEECCCCeEEEEEEecCCCccCCHHHHHHHHHHHHHHHHHhccccCccceEEEEccceEcCC
Confidence 34679999999999999999965 4443211223322 123344456666665442 345799999855 3 3
Q ss_pred CCc--h----HHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHh
Q 030509 88 QNA--A----DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLL 130 (176)
Q Consensus 88 ~~s--~----~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l 130 (176)
... + .... ..+.+.|++. | ++||++.+.--...-|+..+
T Consensus 90 ~v~~~~~l~~~w~~-~~l~~~l~~~--~-~~pV~v~NDanaaalaE~~~ 134 (267)
T 1woq_A 90 VVHSAANVDKSWLN-TDIDALLTAR--L-GRPVEVINDADAAGLAEARY 134 (267)
T ss_dssp EECCCTTSCGGGTT-CBHHHHHHHH--H-TSCEEEEEHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCCCC-CCHHHHHHHH--H-CCCEEEeehhHHHHHHHHHh
Confidence 211 1 0111 2455667763 4 78998888776666666554
No 29
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=90.89 E-value=0.53 Score=40.59 Aligned_cols=105 Identities=10% Similarity=0.055 Sum_probs=63.4
Q ss_pred CCCeEEEEecCCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHHHHHh----c-----CCCEEEEeccCC-C---
Q 030509 20 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISE----F-----NLEGFIVGYPFN-R--- 86 (176)
Q Consensus 20 ~~~~iLglD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~e----~-----~~~~iVVGlPl~-d--- 86 (176)
..+.++|||+|..+|=+++.|..+.+..- ..++....+++.+++.|.+.+++ . ++.+|.||.|=. |
T Consensus 106 ~~~~~lGIDiGgt~i~~~l~d~~G~il~~-~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gigi~~pG~vd~~~ 184 (429)
T 1z05_A 106 LGWQFLSMRLGRGYLTIALHELGGEVLID-TKIDIHEIDQDDVLARLLFEIEEFFQTYAAQLDRVTSIAITLPGLVNSEQ 184 (429)
T ss_dssp TTEEEEEEEEETTEEEEEEEETTSCEEEE-EEEECCCCBHHHHHHHHHHHHHHHHHHTTTTCCEEEEEEEEESSEEETTT
T ss_pred CCCEEEEEEECCCEEEEEEECCCCCEEEE-EEEcCCCCCHHHHHHHHHHHHHHHHHhcCCCcCceEEEEEeccCcEeCCC
Confidence 44678999999999999999987654321 23333222344455665555443 2 366788998854 3
Q ss_pred CCCc-----hHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHh
Q 030509 87 QQNA-----ADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLL 130 (176)
Q Consensus 87 G~~s-----~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l 130 (176)
|... .+.. ..+++.|++. + ++||++.+.--...-|+..+
T Consensus 185 g~v~~~~~l~w~~--~~l~~~L~~~--~-~~pV~v~NDa~aaalaE~~~ 228 (429)
T 1z05_A 185 GIVLQMPHYNVKN--LALGPEIYKA--T-GLPVFVANDTRAWALAEKLF 228 (429)
T ss_dssp TEEEECSSSBCSS--BCHHHHHHHH--H-CSCEEEEEHHHHHHHHHHHH
T ss_pred CeEeecCCCCCCC--CCHHHHHHHH--h-CCCEEEechhHHHHHHHHHh
Confidence 3211 0100 1355667663 4 78998888766666665544
No 30
>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12}
Probab=90.10 E-value=0.26 Score=40.92 Aligned_cols=98 Identities=12% Similarity=0.201 Sum_probs=58.0
Q ss_pred CCeEEEEecCCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHHHHH----hc--CCCEEEEeccCC-C---CCC-
Q 030509 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLIS----EF--NLEGFIVGYPFN-R---QQN- 89 (176)
Q Consensus 21 ~~~iLglD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~----e~--~~~~iVVGlPl~-d---G~~- 89 (176)
...++|+|+|..+|=+++.|..+.+..- ..++..+...+.+++.+.++++ ++ ++.+|-||.|=. | |..
T Consensus 6 ~~~~lgiDiGgt~i~~~l~d~~G~il~~-~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~i~gigi~~pG~vd~~~g~v~ 84 (310)
T 3htv_A 6 HNVVAGVDMGATHIRFCLRTAEGETLHC-EKKRTAEVIAPGLVSGIGEMIDEQLRRFNARCHGLVMGFPALVSKDKRTII 84 (310)
T ss_dssp EEEEEEEEECSSEEEEEEEETTSCEEEE-EEEEHHHHHTTCHHHHHHHHHHHHHHHHTEEEEEEEEEESSCBCTTSSCBC
T ss_pred CCEEEEEEeCCCEEEEEEECCCCCEEEE-EEecCccccHHHHHHHHHHHHHHHHHhcCCCeeEEEEeccccEeCCCCEEE
Confidence 3679999999999999999987755431 1222211112233455555554 33 468899999844 3 321
Q ss_pred -ch---HHH-HHHHHHHHHHhccCCCCCcEEEecCccc
Q 030509 90 -AA---DAV-QVKLFIDDLSATKKLEDMKYAYWNEGFT 122 (176)
Q Consensus 90 -s~---~~~-~v~~Fa~~L~~~~~~~~lpV~~~DEr~T 122 (176)
++ +.. ....+.+.|++. + ++||++.+.--.
T Consensus 85 ~~~~l~~~~~~~~~l~~~l~~~--~-~~pv~v~NDana 119 (310)
T 3htv_A 85 STPNLPLTAADLYDLADKLENT--L-NCPVEFSRDVNL 119 (310)
T ss_dssp SCCSSSCCHHHHTTHHHHHHHH--H-TSCEEEEEHHHH
T ss_pred eCCCCCCccccCccHHHHHHHH--h-CCCEEEeeHHHH
Confidence 11 111 112466778764 4 789888776543
No 31
>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5
Probab=89.76 E-value=2 Score=35.03 Aligned_cols=91 Identities=11% Similarity=0.035 Sum_probs=52.4
Q ss_pred eEEEEecCCCeEEEEEecCCCceeccceeeeC--CCCChhhHHHHHHHHHHh----cC-----C--CEEEEeccCC-CCC
Q 030509 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLR--KKNTIDLMAEDFRSLISE----FN-----L--EGFIVGYPFN-RQQ 88 (176)
Q Consensus 23 ~iLglD~G~kriGvAvsd~~~~~a~Pl~~i~~--~~~~~~~~~~~L~~li~e----~~-----~--~~iVVGlPl~-dG~ 88 (176)
.++|||.|..+|=+++.|..+.+..- ..... ...+++.+++.+.+.+++ .. + .++.||.|=. |..
T Consensus 12 ~~lGiDiGgT~i~~~l~d~~G~il~~-~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~i~~~~igig~pG~v~~~ 90 (305)
T 1zc6_A 12 YLIGVDGGGTGTRIRLHASDGTPLAM-AEGGASALSQGIAKSWQAVLSTLEAAFQQAGLPAAPASACAIGLGLSGVHNRQ 90 (305)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEE-EEESCCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCCGGGEEEEEEESCCCTTS
T ss_pred EEEEEEcCccceEEEEEcCCCCEEEE-EeCCCCCcccCHHHHHHHHHHHHHHHHHhcCCChhhhccceEEEEecCCCchH
Confidence 69999999999999999977644321 11111 112233445665555543 22 2 5688898755 432
Q ss_pred CchHHHHHHHHHHHHHhccCCC-CCcEEEecCcccHHHH
Q 030509 89 NAADAVQVKLFIDDLSATKKLE-DMKYAYWNEGFTSKGV 126 (176)
Q Consensus 89 ~s~~~~~v~~Fa~~L~~~~~~~-~lpV~~~DEr~TT~~A 126 (176)
.. . .|+. .++ ++||++.+.-.....+
T Consensus 91 ~~--~--------~l~~--~~~~~~pv~v~NDa~aaa~g 117 (305)
T 1zc6_A 91 WA--G--------EFES--QAPGFARLSLATDGYTTLLG 117 (305)
T ss_dssp HH--H--------HHHH--TCCCCSEEEEECHHHHHHHH
T ss_pred HH--H--------HHHH--hCCCCceEEEECCHHHHHHh
Confidence 21 1 1554 255 6898887765544333
No 32
>2gel_A Putative GRAM negative resuscitation promoting FA; YEAZ, RPF, actin-like-fold, glycoprotease, chaperone; 2.05A {Salmonella typhimurium} PDB: 2gem_A 1okj_A
Probab=89.74 E-value=6.5 Score=31.27 Aligned_cols=87 Identities=8% Similarity=0.049 Sum_probs=57.0
Q ss_pred eEEEEecCCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHHHHHhc-----CCCEEEEeccCCCCCCchHHHHHH
Q 030509 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEF-----NLEGFIVGYPFNRQQNAADAVQVK 97 (176)
Q Consensus 23 ~iLglD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~e~-----~~~~iVVGlPl~dG~~s~~~~~v~ 97 (176)
.+||||-=+..+++|+.+....++.+ ........+.+...|.+++++. +++.|+||.= -|+.+. .+-..
T Consensus 2 ~iL~idTs~~~~sval~~~~~~~~~~---~~~~~~h~~~l~~~i~~~L~~a~~~~~did~Iav~~G--PGsftg-lRig~ 75 (231)
T 2gel_A 2 RILAIDTATEACSVALWNNGTINAHF---ELCPREHTQRILPMVQEILAASGASLNEIDALAFGRG--PGSFTG-VRIGI 75 (231)
T ss_dssp EEEEEECSSSEEEEEEEETTEEEEEE---EECCSCCHHHHHHHHHHHHHHTTCCGGGCSEEEEECC--SSCHHH-HHHHH
T ss_pred eEEEEECCCcCeEEEEEECCEEEEEE---hhhhHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcC--CChhHh-HHHHH
Confidence 68999999999999999865433322 1122222234567777887765 4799999820 244433 33346
Q ss_pred HHHHHHHhccCCCCCcEEEec
Q 030509 98 LFIDDLSATKKLEDMKYAYWN 118 (176)
Q Consensus 98 ~Fa~~L~~~~~~~~lpV~~~D 118 (176)
.|++.|... + ++|++-++
T Consensus 76 ~~ak~la~~--~-~~Pl~~V~ 93 (231)
T 2gel_A 76 GIAQGLALG--A-NLPMIGVS 93 (231)
T ss_dssp HHHHHHHHT--T-TCCEEEEC
T ss_pred HHHHHHHHH--c-CCCEEEec
Confidence 889999863 3 88988775
No 33
>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A*
Probab=89.69 E-value=3.2 Score=34.68 Aligned_cols=93 Identities=17% Similarity=0.106 Sum_probs=54.7
Q ss_pred CeEEEEecCCCeEEEEEecCCCceeccceeeeCCC--CCh--------hhHHHHHHHHHHh-----cCCCEEEEeccCCC
Q 030509 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKK--NTI--------DLMAEDFRSLISE-----FNLEGFIVGYPFNR 86 (176)
Q Consensus 22 ~~iLglD~G~kriGvAvsd~~~~~a~Pl~~i~~~~--~~~--------~~~~~~L~~li~e-----~~~~~iVVGlPl~d 86 (176)
|.+||||-+...+++|+.+....++.-...+.+.. ..+ +.+...+.+++++ .+++.|+++. ..
T Consensus 1 M~iLgIdts~~~~~val~~~g~i~~~~~~~~~~~~gg~~p~~~~~~h~~~l~~~i~~~L~~agi~~~did~Ia~~~--GP 78 (330)
T 2ivn_A 1 MLALGIEGTAHTLGIGIVSEDKVLANVFDTLTTEKGGIHPKEAAEHHARLMKPLLRKALSEAGVSLDDIDVIAFSQ--GP 78 (330)
T ss_dssp CCEEEEECSSSEEEEEEECSSCEEEEEEEECCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHTCCTTTCCEEEEEE--ES
T ss_pred CEEEEEEccCCCeEEEEEECCEEEEEEEEEeecccCCcCchhhHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEEC--CC
Confidence 46999999999999999986555543222211111 011 1122456666655 3688999851 03
Q ss_pred CCCchHHHHHHHHHHHHHhccCCCCCcEEEecCc
Q 030509 87 QQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEG 120 (176)
Q Consensus 87 G~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr 120 (176)
|..+.. +....|++.|... + ++|++.+++-
T Consensus 79 G~~~~l-rvg~~~ak~la~~--~-~~pl~~v~h~ 108 (330)
T 2ivn_A 79 GLGPAL-RVVATAARALAVK--Y-RKPIVGVNHC 108 (330)
T ss_dssp SCHHHH-HHHHHHHHHHHHH--T-TCCEEEEEHH
T ss_pred CchHHH-HHHHHHHHHHHHH--c-CCCEEeeCcH
Confidence 443322 2234678877763 3 7899888763
No 34
>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, JOI for structural genomics, JCSG; 2.50A {Thermotoga maritima} SCOP: c.55.1.9 c.55.1.9
Probab=89.44 E-value=6.3 Score=31.33 Aligned_cols=97 Identities=10% Similarity=0.034 Sum_probs=61.2
Q ss_pred CCCeEEEEecCCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHHHHHhc-----CCCEEEEeccCCCCCCchHHH
Q 030509 20 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEF-----NLEGFIVGYPFNRQQNAADAV 94 (176)
Q Consensus 20 ~~~~iLglD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~e~-----~~~~iVVGlPl~dG~~s~~~~ 94 (176)
-.-+|||||-=+..++||+.+....+ + ..........+.+...|.+++++. +++.|+||. --|+.+. .+
T Consensus 10 ~~~~iLaidTS~~~~sval~~~~~~l-~--~~~~~~r~Hse~L~p~i~~~L~~a~~~~~dld~Iav~~--GPGsfTG-lR 83 (218)
T 2a6a_A 10 HHHMNVLALDTSQRIRIGLRKGEDLF-E--ISYTGEKKHAEILPVVVKKLLDELDLKVKDLDVVGVGI--GPGGLTG-LR 83 (218)
T ss_dssp ---CEEEEEECSSSEEEEEEETTEEE-E--EEEESCGGGGGHHHHHHHHHHHHHTCCGGGCSEEEEEC--CSSCHHH-HH
T ss_pred ccceEEEEEcCCcCeEEEEEECCEEE-E--EEecchHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEc--CCCchHh-HH
Confidence 34579999999999999999864433 2 122222222234567777777664 579999981 0345554 44
Q ss_pred HHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHH
Q 030509 95 QVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELL 129 (176)
Q Consensus 95 ~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~ 129 (176)
-.-.+|+-|... + ++|++=+ ||.+|...
T Consensus 84 iG~~~Ak~La~~--~-~iPl~gV----s~l~a~a~ 111 (218)
T 2a6a_A 84 VGIATVVGLVSP--Y-DIPVAPL----NSFEMTAK 111 (218)
T ss_dssp HHHHHHHHHHGG--G-TCCEEEE----CHHHHHHH
T ss_pred HHHHHHHHHHHH--c-CCCEEEe----CcHHHHHh
Confidence 457899999864 3 7888865 46666543
No 35
>2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase; HET: BGC ADP; 2.10A {Trypanosoma cruzi}
Probab=89.15 E-value=0.72 Score=38.94 Aligned_cols=63 Identities=14% Similarity=0.116 Sum_probs=43.0
Q ss_pred CCeEEEEecCCCeEEEEEecC----CCceeccceeeeCCCCChhhHHHHHHHHHHhc------CCCEEEEeccCC
Q 030509 21 RGRFLGLDVGDKYVGLSISDP----KNKIASPLSVLLRKKNTIDLMAEDFRSLISEF------NLEGFIVGYPFN 85 (176)
Q Consensus 21 ~~~iLglD~G~kriGvAvsd~----~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~e~------~~~~iVVGlPl~ 85 (176)
++.++|+|+|..+|=+++.|. .+.+..-....+. .+.+.+++.|.+++++. ++.+|.||.|=.
T Consensus 28 ~~~~lgiDiGgt~i~~~l~d~~~~~~g~il~~~~~~~~--~~~~~~~~~i~~~i~~~~~~~~~~i~gigi~~pG~ 100 (373)
T 2q2r_A 28 APLTFVGDVGGTSARMGFVREGKNDSVHACVTRYSMKR--KDITEIIEFFNEIIELMPASVMKRVKAGVINVPGP 100 (373)
T ss_dssp SCEEEEEEECSSEEEEEEEEECGGGCEEEEEEEEECTT--CBGGGHHHHHHHHHHHSCHHHHTTEEEEEEEESSC
T ss_pred CCeEEEEEEccccEEEEEEecccCCCccEEEEeeecCC--CCHHHHHHHHHHHHHHHhhcccccccEEEEEeecc
Confidence 568999999999999999986 5543321111222 23445677888877653 467899999865
No 36
>1sz2_A Glucokinase, glucose kinase; ATP-dependent, glucose binding, transferase; HET: MSE BGC; 2.20A {Escherichia coli} SCOP: c.55.1.7 PDB: 1q18_A*
Probab=88.90 E-value=1.2 Score=36.84 Aligned_cols=101 Identities=13% Similarity=0.066 Sum_probs=58.8
Q ss_pred CCCCeEEEEecCCCeEEEEEecC-CCceeccceeeeCCCCChhhHHHHHHHHHHhc--CCCEEEEeccCC-CCCCc----
Q 030509 19 SKRGRFLGLDVGDKYVGLSISDP-KNKIASPLSVLLRKKNTIDLMAEDFRSLISEF--NLEGFIVGYPFN-RQQNA---- 90 (176)
Q Consensus 19 ~~~~~iLglD~G~kriGvAvsd~-~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~e~--~~~~iVVGlPl~-dG~~s---- 90 (176)
..+..++|+|+|..+|=+|+.|. .+.+.. ...++.... +.+.+.+.+++++. ++.+|.||.|=- |...-
T Consensus 11 ~~~~~~lgiDiGGT~i~~~l~dl~~g~i~~-~~~~~~~~~--~~~~~~i~~~~~~~~~~i~gigi~~pG~vd~~~~~~~n 87 (332)
T 1sz2_A 11 GSTKYALVGDVGGTNARLALCDIASGEISQ-AKTYSGLDY--PSLEAVIRVYLEEHKVEVKDGCIAIACPITGDWVAMTN 87 (332)
T ss_dssp ---CEEEEEEEETTEEEEEEEETTTCCEEE-EEEEEGGGC--SCHHHHHHHHHHHSCCCCCEEEEEESSCCCSSEECCSS
T ss_pred CCCCEEEEEEechhheEEEEEECCCCcEEE-EEEecCCCc--CCHHHHHHHHHHhcCCCccEEEEEEeCceeCCEEeeeC
Confidence 45688999999999999999983 454443 233333221 23356677777654 588999999855 42110
Q ss_pred -hHHHHHHHHHHHHHhccCCCCCc-EEEecCcccHHHHHHH
Q 030509 91 -ADAVQVKLFIDDLSATKKLEDMK-YAYWNEGFTSKGVELL 129 (176)
Q Consensus 91 -~~~~~v~~Fa~~L~~~~~~~~lp-V~~~DEr~TT~~A~~~ 129 (176)
.+. + . .+.|++. + ++| |++.+.--...-|+..
T Consensus 88 l~w~--~-~-~~~l~~~--~-~~p~V~v~NDanaaalgE~~ 121 (332)
T 1sz2_A 88 HTWA--F-S-IAEMKKN--L-GFSHLEIINDFTAVSMAIPM 121 (332)
T ss_dssp SCCC--E-E-HHHHHHH--H-TCSEEEEEEHHHHHHHHGGG
T ss_pred CCCc--C-C-HHHHHHH--h-CCCcEEEEeCHhHHhccccc
Confidence 111 1 1 2345542 4 677 7777765554444433
No 37
>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A
Probab=87.04 E-value=1.4 Score=36.53 Aligned_cols=105 Identities=15% Similarity=0.041 Sum_probs=62.4
Q ss_pred CCCeEEEEecCCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHHHHHh---------cCCCEEEEeccCC-C---
Q 030509 20 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISE---------FNLEGFIVGYPFN-R--- 86 (176)
Q Consensus 20 ~~~~iLglD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~e---------~~~~~iVVGlPl~-d--- 86 (176)
..+.++|||+|..+|=+++.|..+.+..- ...+.. .+.+.+++.+.+.+++ .++.+|.||.|=. |
T Consensus 28 ~~~~~lgiDiGgt~i~~~l~d~~G~il~~-~~~~~~-~~~~~~~~~i~~~i~~~~~~~~~~~~~i~gigi~~pG~vd~~~ 105 (343)
T 2yhw_A 28 GTLSALAVDLGGTNLRVAIVSMKGEIVKK-YTQFNP-KTYEERINLILQMCVEAAAEAVKLNCRILGVGISTGGRVNPRE 105 (343)
T ss_dssp CEEEEEEEEECSSEEEEEEEETTSCEEEE-EEEECC-SSHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEESSEEETTT
T ss_pred CCcEEEEEEECCCEEEEEEECCCCcEEEE-EEEcCC-CCHHHHHHHHHHHHHHHHHhcccccCceEEEEEecccCEeCCC
Confidence 44678999999999999999987755432 223322 2333345555555432 2477889999854 3
Q ss_pred CCCc--hH----HHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHh
Q 030509 87 QQNA--AD----AVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLL 130 (176)
Q Consensus 87 G~~s--~~----~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l 130 (176)
|... +. ... ..+.+.|++. + ++||++.+.--....|+..+
T Consensus 106 g~v~~~~~~~~~w~~-~~l~~~l~~~--~-~~pv~v~NDa~aaal~E~~~ 151 (343)
T 2yhw_A 106 GIVLHSTKLIQEWNS-VDLRTPLSDT--L-HLPVWVDNDGNCAALAERKF 151 (343)
T ss_dssp TEEEECCTTSSSCSS-EECHHHHHHH--H-CSCEEEEEHHHHHHHHHHHT
T ss_pred CEEEeCCcCCCCCcC-CCHHHHHHHH--H-CCCEEEechhHHHHHHHHHh
Confidence 3211 00 000 1345566653 4 78999888776666665543
No 38
>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5
Probab=86.97 E-value=1.1 Score=36.44 Aligned_cols=92 Identities=11% Similarity=0.023 Sum_probs=54.2
Q ss_pred EEEEecCCCeEEEEEecCCCceeccceeeeC-C--CCChhhHHHHHHHHHHh------cCCCEEEEeccCCCCCCchHHH
Q 030509 24 FLGLDVGDKYVGLSISDPKNKIASPLSVLLR-K--KNTIDLMAEDFRSLISE------FNLEGFIVGYPFNRQQNAADAV 94 (176)
Q Consensus 24 iLglD~G~kriGvAvsd~~~~~a~Pl~~i~~-~--~~~~~~~~~~L~~li~e------~~~~~iVVGlPl~dG~~s~~~~ 94 (176)
++|||.|..+|=+++.| .+.+..- ...+. + ..+.+.+++.|.+.+++ .++.+|.||.|=-. ....
T Consensus 2 ~lgiDiGGT~~~~~l~d-~g~il~~-~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~i~~igig~pG~~-~~~~--- 75 (291)
T 1zbs_A 2 ILIGDSGSTKTDWCIAK-EGKSLGR-FQTSGINPFQQDRNEIDTALRSEVLPAIGQKASSIRAVYFYGAGCT-PAKA--- 75 (291)
T ss_dssp EEEEEECSSEEEEEEEE-TTEEEEE-EEEECCCTTTSCHHHHHHHHTTTTHHHHTTSTTTCCEEEEEETTCC-TTTH---
T ss_pred EEEEEeCccceEEEEEe-CCeEEEE-EECCCCCcccCCHHHHHHHHHHHHHHHhCCCcccccEEEEECCCCC-hHHH---
Confidence 79999999999999999 6644321 12222 1 11344456666665543 35788999987432 1111
Q ss_pred HHHHHHHHHHhccCCCC--CcEEEecCcccHHHH
Q 030509 95 QVKLFIDDLSATKKLED--MKYAYWNEGFTSKGV 126 (176)
Q Consensus 95 ~v~~Fa~~L~~~~~~~~--lpV~~~DEr~TT~~A 126 (176)
..+.+.|++. + + .||...+--.....+
T Consensus 76 --~~l~~~l~~~--~-~~~~pv~v~NDa~~aa~g 104 (291)
T 1zbs_A 76 --PMLNEALDSM--L-PHCDRIEVAGDMLGAARA 104 (291)
T ss_dssp --HHHHHHHHHH--S-TTCSEEEEECHHHHHHHH
T ss_pred --HHHHHHHHHh--c-CCCCcEEEeCcHHHHHHh
Confidence 2566667663 4 4 588776654443333
No 39
>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum}
Probab=86.48 E-value=4.7 Score=33.92 Aligned_cols=94 Identities=11% Similarity=0.027 Sum_probs=56.0
Q ss_pred CCCCeEEEEecCCCeEEEEEecCCCceeccceeeeCCC----------CChhhHHHHHHHHHHh-----cCCCEEEEecc
Q 030509 19 SKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKK----------NTIDLMAEDFRSLISE-----FNLEGFIVGYP 83 (176)
Q Consensus 19 ~~~~~iLglD~G~kriGvAvsd~~~~~a~Pl~~i~~~~----------~~~~~~~~~L~~li~e-----~~~~~iVVGlP 83 (176)
|..|.+||||--..-+++|+.+....++.-...+.+.. ...+.+...|.+++++ .+++.|+|+.
T Consensus 3 ~~~M~iLgIdts~~~~svAl~~~~~i~~~~~~~~~~~~gGv~p~~a~~~H~~~l~~~i~~~L~~ag~~~~did~Iav~~- 81 (334)
T 3eno_A 3 MDPMIVLGLEGTAHTISCGIIDESRILAMESSMYRPKTGGIRPLDAAVHHSEVIDTVISRALEKAKISIHDIDLIGFSM- 81 (334)
T ss_dssp CCCCEEEEEECSSSEEEEEEEESSCCCEEEEEECCCSSCSCCHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCCEEEEEC-
T ss_pred ccCceEEEEECCCcCeEEEEEECCEEEEEEEEeeccccCCcCcchHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEc-
Confidence 35689999999999999999986655554222211100 0011234556666665 3689999982
Q ss_pred CCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEec
Q 030509 84 FNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWN 118 (176)
Q Consensus 84 l~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~D 118 (176)
.-|..+. -+....|++.|... + ++|++.++
T Consensus 82 -gPG~~t~-lrvg~~~ak~La~~--~-~~Pl~~v~ 111 (334)
T 3eno_A 82 -GPGLAPS-LRVTATAARTISVL--T-GKPIIGVN 111 (334)
T ss_dssp -SSSCHHH-HHHHHHHHHHHHHH--H-TCCCEEEC
T ss_pred -CCCCcch-HHHHHHHHHHHhhc--c-CCCeEEec
Confidence 0233322 22335677777653 2 77888875
No 40
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}
Probab=86.05 E-value=3.1 Score=34.60 Aligned_cols=63 Identities=14% Similarity=0.137 Sum_probs=40.4
Q ss_pred CeEEEEecCCCeEEEEEecCCCceeccceee--eCC---C---CChhhHHHHHHHHHHhc--CCCEEEEeccC
Q 030509 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVL--LRK---K---NTIDLMAEDFRSLISEF--NLEGFIVGYPF 84 (176)
Q Consensus 22 ~~iLglD~G~kriGvAvsd~~~~~a~Pl~~i--~~~---~---~~~~~~~~~L~~li~e~--~~~~iVVGlPl 84 (176)
..++|||+|+..|-+++..........+... +.. + .+.+.+...|++++.+. +...+++++|-
T Consensus 13 ~~~vgiDiGt~~i~~~~~~~~~~~i~~~g~~~~ps~~~~~g~i~d~~~~~~~ik~~~~~~~~~~~~v~~~i~~ 85 (377)
T 2ych_A 13 VEALGLEIGASALKLVEVSGNPPALKALASRPTPPGLLMEGMVAEPAALAQEIKELLLEARTRKRYVVTALSN 85 (377)
T ss_dssp CCCEEEEECSSEEEEEEEETTTTEEEEEEEEECCTTSEETTEESCHHHHHHHHHHHHHHHTCCCCEEEEEECG
T ss_pred CceEEEEeCCCeEEEEEEeCCceEEEEEEeEECCCCcccCCCcCCHHHHHHHHHHHHHHcCCCcceEEEEecC
Confidence 4689999999999999876332111111221 111 0 23455678888888875 56788999875
No 41
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Probab=85.81 E-value=2.1 Score=34.20 Aligned_cols=50 Identities=14% Similarity=0.088 Sum_probs=32.1
Q ss_pred CeEEEEecCCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHHHHHhc
Q 030509 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEF 73 (176)
Q Consensus 22 ~~iLglD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~e~ 73 (176)
|.+||||.|+..|=+|+.|..+.+..- .+.++...++...+-|.+++++.
T Consensus 1 M~~lGID~GsT~tk~av~d~~~~il~~--~~~~~g~~~e~a~~vl~~~~~~a 50 (276)
T 4ehu_A 1 MYTMGLDIGSTASKGVILKNGEDIVAS--ETISSGTGTTGPSRVLEKLYGKT 50 (276)
T ss_dssp CEEEEEEECSSCEEEEEEETTTEEEEE--EEESCCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEEcCccEEEEEEEECCCeEEEE--EEecCCCCHHHHHHHHHHHHHHC
Confidence 568999999999999999987755442 23333333333334566666554
No 42
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=82.42 E-value=8.1 Score=34.26 Aligned_cols=93 Identities=11% Similarity=0.027 Sum_probs=52.9
Q ss_pred CCCeEEEEecCCCeEEEEEecCCC-ceeccceeeeCC----------CCChhhHHHHHHHHHHh---cCCCEEEEeccCC
Q 030509 20 KRGRFLGLDVGDKYVGLSISDPKN-KIASPLSVLLRK----------KNTIDLMAEDFRSLISE---FNLEGFIVGYPFN 85 (176)
Q Consensus 20 ~~~~iLglD~G~kriGvAvsd~~~-~~a~Pl~~i~~~----------~~~~~~~~~~L~~li~e---~~~~~iVVGlPl~ 85 (176)
.+|.+||||--...+++|+.+..+ .++.-....... ....+.+...+.+++++ .+++.|+|+. .
T Consensus 4 ~~m~iL~i~ts~~~~~~al~~~~~~~~~~~~~~~~~~~gg~~p~~a~~~h~~~l~~~i~~~l~~~~~~~id~ia~~~--g 81 (540)
T 3en9_A 4 DPMICLGLEGTAEKTGVGIVTSDGEVLFNKTIMYKPPKQGINPREAADHHAETFPKLIKEAFEVVDKNEIDLIAFSQ--G 81 (540)
T ss_dssp CSCEEEEEECSSSEEEEEEEETTSCEEEEEEEECCCCCSSSSCCCHHHHHHHHHHHHHHHHHHHSCGGGCCEEEEEE--E
T ss_pred ccceEEEEEcCccceEEEEEECCCeEEEEEEEeecCCCCCCChHHHHHHHHHHHHHHHHHHHHhCCHhHCcEEEEec--C
Confidence 458999999999999999999773 333322221100 00011223334444444 4799999872 0
Q ss_pred CCCCchHHHHHHHHHHHHHhccCCCCCcEEEec
Q 030509 86 RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWN 118 (176)
Q Consensus 86 dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~D 118 (176)
-|..+.. .-.-.||+.|+.. + ++|++-++
T Consensus 82 PG~~~~l-~vg~~~ak~la~~--~-~~p~~~v~ 110 (540)
T 3en9_A 82 PGLGPSL-RVTATVARTLSLT--L-KKPIIGVN 110 (540)
T ss_dssp SSCHHHH-HHHHHHHHHHHHH--H-TCCEEEEE
T ss_pred CCchhhH-HHHHHHHHHHHHH--h-CCCeeEec
Confidence 2333321 2335667777653 2 67888775
No 43
>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str}
Probab=81.70 E-value=13 Score=30.35 Aligned_cols=57 Identities=19% Similarity=0.211 Sum_probs=38.9
Q ss_pred eEEEEecCCCeEEEEEecCCCceeccceeeeCC-CCChhhHHHHHHHHHHhc-----CCCEEEEe
Q 030509 23 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRK-KNTIDLMAEDFRSLISEF-----NLEGFIVG 81 (176)
Q Consensus 23 ~iLglD~G~kriGvAvsd~~~~~a~Pl~~i~~~-~~~~~~~~~~L~~li~e~-----~~~~iVVG 81 (176)
++|+||+|..+|=+|+-|......+ ..+... ....+++...|.++++.+ ++++++|-
T Consensus 1 MlL~IDIGNT~ik~gl~~~~~l~~~--~r~~T~~~~t~de~~~~l~~ll~~~~~~~~~i~~iiIS 63 (268)
T 2h3g_X 1 MIFVLDVGNTNAVLGVFEEGELRQH--WRMETDRHKTEDEYGMLVKQLLEHEGLSFEDVKGIIVS 63 (268)
T ss_dssp CEEEEEECSSEEEEEEEETTEEEEE--EEEECCTTCCHHHHHHHHHHHHHHTTCCGGGCCEEEEE
T ss_pred CEEEEEECcCcEEEEEEECCEEEEE--EEecCCCcCCHHHHHHHHHHHHHHcCCCcccCcEEEEE
Confidence 3799999999999999986543332 222222 123345567788888765 47889987
No 44
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A*
Probab=81.60 E-value=3 Score=36.86 Aligned_cols=62 Identities=15% Similarity=0.206 Sum_probs=37.7
Q ss_pred CCCeEEEEecCCCeEEEEEecCCCceec----cceeeeCC----CCChhhHHHHHHHHHHh------cCCCEEEEe
Q 030509 20 KRGRFLGLDVGDKYVGLSISDPKNKIAS----PLSVLLRK----KNTIDLMAEDFRSLISE------FNLEGFIVG 81 (176)
Q Consensus 20 ~~~~iLglD~G~kriGvAvsd~~~~~a~----Pl~~i~~~----~~~~~~~~~~L~~li~e------~~~~~iVVG 81 (176)
.+..+||||+|+..+=+++.|..+.+.. |+...... +.+++.+|+.+.+.+++ .+|.+|-|+
T Consensus 2 ~m~~~lgIDiGtts~K~~l~d~~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~~~~~~~~I~~Igis 77 (504)
T 3ll3_A 2 SLKYIIGMDVGTTATKGVLYDINGKAVASVSKGYPLIQTKVGQAEEDPKLIFDAVQEIIFDLTQKIDGKIAAISWS 77 (504)
T ss_dssp CCEEEEEEEECSSEEEEEEEETTSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHTCSSEEEEEEEE
T ss_pred CCCEEEEEEecCCceEEEEEcCCCCEEEEEEeecceecCCCCcEEECHHHHHHHHHHHHHHHHHhCCCCeEEEEEE
Confidence 3457999999999999999998775432 22211111 13455667776666554 345555444
No 45
>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A
Probab=81.09 E-value=5.5 Score=32.15 Aligned_cols=58 Identities=21% Similarity=0.228 Sum_probs=38.3
Q ss_pred CeEEEEecCCCeEEEEEecCCCceeccceeeeCCC-CChhhHHHHHHHHHH--hcCCCEEEEe
Q 030509 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKK-NTIDLMAEDFRSLIS--EFNLEGFIVG 81 (176)
Q Consensus 22 ~~iLglD~G~kriGvAvsd~~~~~a~Pl~~i~~~~-~~~~~~~~~L~~li~--e~~~~~iVVG 81 (176)
+++|+||+|-.+|=+|+-|......+ ..++... ...+++...|..+++ .+++++++|.
T Consensus 3 ~M~L~IDIGNT~ik~gl~~~~~l~~~--~r~~T~~~~t~de~~~~l~~l~~~~~~~i~~i~Is 63 (249)
T 3bex_A 3 PMYLLVDVGNTHSVFSITEDGKTFRR--WRLSTGVFQTEDELFSHLHPLLGDAMREIKGIGVA 63 (249)
T ss_dssp CEEEEEEECSSEEEEEEESSSSSCEE--EEEECCTTCCHHHHHHHHHHHHGGGGGGEEEEEEE
T ss_pred ceEEEEEECCCeEEEEEEECCEEEEE--EEecCCCCCCHHHHHHHHHHHHhhccccCCEEEEE
Confidence 46899999999999999986543332 1222221 223455667777775 3567888888
No 46
>1zxo_A Conserved hypothetical protein Q8A1P1; NESG, BTR25, structural genomics, PSI, protein structure initiative; 3.20A {Bacteroides thetaiotaomicron} SCOP: c.55.1.5 c.55.1.5
Probab=78.63 E-value=0.58 Score=38.13 Aligned_cols=89 Identities=8% Similarity=-0.014 Sum_probs=42.4
Q ss_pred EEEEecCCCeEEEEEecCCCceeccceeeeCC---CCChhhHHHHHHHHH----HhcCCCEEEEeccCCCCCCchHHHHH
Q 030509 24 FLGLDVGDKYVGLSISDPKNKIASPLSVLLRK---KNTIDLMAEDFRSLI----SEFNLEGFIVGYPFNRQQNAADAVQV 96 (176)
Q Consensus 24 iLglD~G~kriGvAvsd~~~~~a~Pl~~i~~~---~~~~~~~~~~L~~li----~e~~~~~iVVGlPl~dG~~s~~~~~v 96 (176)
++|||.|.-+|=+++.| .+.+..-. ..+.. ..+.+.+++.|.+++ ...++.+|.||.|=-. ....
T Consensus 2 ~lgiDiGGT~i~~~l~d-~g~il~~~-~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~i~~igig~pG~~-~~~~----- 73 (291)
T 1zxo_A 2 ILIADSGSTKTDWCVVL-NGAVIKRL-GTKGINPFFQSEEEIQQKLTASLLPQLPEGKFNAVYFYGAGCT-PEKA----- 73 (291)
T ss_dssp --CEECCTTCEEEEEEC-SSSEEEEE-EECCCCTTTSCSTTTTTTTTC-------------CEEECTTCC-TTTT-----
T ss_pred EEEEEeccccEEEEEEc-CCeEEEEE-ECCCCCcccCCHHHHHHHHHHHHHHhcCcccccEEEEEcCCCC-HHHH-----
Confidence 68999999999999999 66443211 12110 101222233333333 3356888999988332 1111
Q ss_pred HHHHHHHHhccCCCC-CcEEEecCccc
Q 030509 97 KLFIDDLSATKKLED-MKYAYWNEGFT 122 (176)
Q Consensus 97 ~~Fa~~L~~~~~~~~-lpV~~~DEr~T 122 (176)
..+.+.|++. ++. .||...+--..
T Consensus 74 ~~l~~~l~~~--~~~~~pv~v~NDa~~ 98 (291)
T 1zxo_A 74 PVLRRAIADS--LPVIGNIKANSDMLA 98 (291)
T ss_dssp HHHHHHHHHH--SCCCSCCEEECSHHH
T ss_pred HHHHHHHHHh--cCCCceEEEECcHHH
Confidence 1456667663 422 58777665443
No 47
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum}
Probab=78.59 E-value=5.3 Score=35.25 Aligned_cols=63 Identities=14% Similarity=0.209 Sum_probs=38.4
Q ss_pred CCeEEEEecCCCeEEEEEecCCCcee-c---cceeeeC----CCCChhhHHHHHHHHHHh---------cCCCEEEEecc
Q 030509 21 RGRFLGLDVGDKYVGLSISDPKNKIA-S---PLSVLLR----KKNTIDLMAEDFRSLISE---------FNLEGFIVGYP 83 (176)
Q Consensus 21 ~~~iLglD~G~kriGvAvsd~~~~~a-~---Pl~~i~~----~~~~~~~~~~~L~~li~e---------~~~~~iVVGlP 83 (176)
+..+||||+|+..+=+++.|..+.+. + |+..... .+.+++.+|+.+.+.+++ .+|.+|-|+-|
T Consensus 6 ~~~~lgIDiGtts~k~~l~d~~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~i~~~i~~~~~~~~~~~~~I~~Igis~~ 85 (508)
T 3ifr_A 6 GRQVIGLDIGTTSTIAILVRLPDTVVAVASRPTTLSSPHPGWAEEDPAQWWDNARAVLAELKTTAGESDWRPGGICVTGM 85 (508)
T ss_dssp -CEEEEEEECSSEEEEEEEETTTEEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEEEEC
T ss_pred CCEEEEEEecCcceEEEEECCCCCEEEEEEEecceecCCCCceEECHHHHHHHHHHHHHHHHHhcCCChhheEEEEEECC
Confidence 46799999999999999999877543 2 2221111 122455566666555433 35666666654
No 48
>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti}
Probab=77.92 E-value=6.2 Score=34.98 Aligned_cols=62 Identities=16% Similarity=0.202 Sum_probs=37.8
Q ss_pred CeEEEEecCCCeEEEEEecCCCcee-c---cceeee-C---CCCChhhHHHHHHHHHHh---------cCCCEEEEecc
Q 030509 22 GRFLGLDVGDKYVGLSISDPKNKIA-S---PLSVLL-R---KKNTIDLMAEDFRSLISE---------FNLEGFIVGYP 83 (176)
Q Consensus 22 ~~iLglD~G~kriGvAvsd~~~~~a-~---Pl~~i~-~---~~~~~~~~~~~L~~li~e---------~~~~~iVVGlP 83 (176)
..+||||+|+..+=+++.|..+.+. + |+.+.. . .+.+++.+|+.+.+.+++ .+|.+|-|+-|
T Consensus 26 ~~~lgIDiGtts~k~~l~d~~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~i~~~i~~~~~~~~~~~~~I~~Igis~~ 104 (520)
T 4e1j_A 26 GYILAIDQGTTSTRAIVFDGNQKIAGVGQKEFKQHFPKSGWVEHDPEEIWQTVVSTVKEAIEKSGITANDIAAIGITNQ 104 (520)
T ss_dssp CEEEEEEECSSEEEEEEECTTSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHTTTCCGGGEEEEEEEEC
T ss_pred CeEEEEEeCCcceEEEEECCCCCEEEEEEEecccccCCCCcEEECHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEeCC
Confidence 4699999999999999999887543 2 222211 1 123445566766555433 24556666544
No 49
>2p3r_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics,; 2.00A {Escherichia coli} PDB: 3ezw_A 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=77.88 E-value=6.1 Score=34.90 Aligned_cols=63 Identities=10% Similarity=0.061 Sum_probs=38.7
Q ss_pred CCeEEEEecCCCeEEEEEecCCCcee----ccceeeeC----CCCChhhHHHHHHHHHH----h-----cCCCEEEEecc
Q 030509 21 RGRFLGLDVGDKYVGLSISDPKNKIA----SPLSVLLR----KKNTIDLMAEDFRSLIS----E-----FNLEGFIVGYP 83 (176)
Q Consensus 21 ~~~iLglD~G~kriGvAvsd~~~~~a----~Pl~~i~~----~~~~~~~~~~~L~~li~----e-----~~~~~iVVGlP 83 (176)
+..+||||+|+..+=+++.|..+.+. .|+.+... ...+++.+|+.+.+.++ + .+|.+|-|+-|
T Consensus 2 ~~~~lgIDiGtts~k~~l~d~~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~~~~~~~~~~~I~~Igis~~ 81 (510)
T 2p3r_A 2 KKYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVLAKADISSDQIAAIGITNQ 81 (510)
T ss_dssp CCEEEEEEECSSEEEEEEECTTCCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEEC
T ss_pred CcEEEEEEcCCcceEEEEECCCCCEEEEEEEecccccCCCCcEEECHHHHHHHHHHHHHHHHHHcCCChhheEEEEEeCC
Confidence 45799999999999999999887553 23322211 12344556666655543 3 34566666643
No 50
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}
Probab=77.81 E-value=14 Score=28.87 Aligned_cols=64 Identities=16% Similarity=0.167 Sum_probs=35.4
Q ss_pred CeEEEEecCCCeEEEEEecCCCc-eecc---ceeeeCCC-CChhh---HHHHHHHHHHh---cCCCEEEEeccCC
Q 030509 22 GRFLGLDVGDKYVGLSISDPKNK-IASP---LSVLLRKK-NTIDL---MAEDFRSLISE---FNLEGFIVGYPFN 85 (176)
Q Consensus 22 ~~iLglD~G~kriGvAvsd~~~~-~a~P---l~~i~~~~-~~~~~---~~~~L~~li~e---~~~~~iVVGlPl~ 85 (176)
..++|||.|+..|=+++.|..+. +... -..+...- .+.+. .+.++.+.+.. ..+..+|+..|..
T Consensus 28 ~~~~gIDiGS~s~k~vi~~~~~~~l~~~~~~~~~l~~g~i~d~~~~~~~l~~~~~~~~~~~~~~~~~~v~tvp~~ 102 (272)
T 3h1q_A 28 PYKVGVDLGTADIVLVVTDQEGIPVAGALKWASVVKDGLVVDYIGAIQIVRELKAKVERLLGSELFQAATAIPPG 102 (272)
T ss_dssp CCEEEEECCSSEEEEEEECTTCCEEEEEEEECCCCBTTBCTTHHHHHHHHHHHHHHHHHHSSSCCCEEEEECCSC
T ss_pred CEEEEEEcccceEEEEEECCCCcEEEEEeecccccCCCEEEcHHHHHHHHHHHHHHHHHhcCCccCeEEEEcCCC
Confidence 45899999999999998876542 2211 11111100 01122 23333333333 3567899999986
No 51
>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*
Probab=77.19 E-value=6.3 Score=34.62 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=21.5
Q ss_pred CeEEEEecCCCeEEEEEecCCCcee
Q 030509 22 GRFLGLDVGDKYVGLSISDPKNKIA 46 (176)
Q Consensus 22 ~~iLglD~G~kriGvAvsd~~~~~a 46 (176)
..+||||+|+..+=+++.|..+.+.
T Consensus 6 ~~~lgIDiGtts~k~~l~d~~G~il 30 (501)
T 3g25_A 6 KYILSIDQGTTSSRAILFNQKGEIA 30 (501)
T ss_dssp CEEEEEEECSSEEEEEEECTTSCEE
T ss_pred cEEEEEEeCccceEEEEEcCCCCEE
Confidence 4799999999999999999887553
No 52
>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=77.13 E-value=7.4 Score=34.07 Aligned_cols=62 Identities=13% Similarity=-0.006 Sum_probs=39.6
Q ss_pred CeEEEEecCCCeEEEEEecCCCcee----ccceeeeCC----CCChhhHHHHHHHHHHh---------cCCCEEEEecc
Q 030509 22 GRFLGLDVGDKYVGLSISDPKNKIA----SPLSVLLRK----KNTIDLMAEDFRSLISE---------FNLEGFIVGYP 83 (176)
Q Consensus 22 ~~iLglD~G~kriGvAvsd~~~~~a----~Pl~~i~~~----~~~~~~~~~~L~~li~e---------~~~~~iVVGlP 83 (176)
..+||||+|+..|=+++.|..+.+. .|....... +.+++.+|+.+.+.+++ .+|.+|-|+-|
T Consensus 2 ~~~lgiDiGtT~~k~~l~d~~g~i~~~~~~~~~~~~p~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~~i~~Igis~~ 80 (495)
T 2dpn_A 2 AFLLALDQGTTSSRAILFTLEGRPVAVAKREFRQLYPKPGWVEHDPLEIWETTLWAAREVLRRAGAEAGEVLALGITNQ 80 (495)
T ss_dssp -CEEEEEECSSEEEEEEECTTSCEEEEEEEECCEECSSTTCCEECHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEEEEC
T ss_pred cEEEEEeeCCcceEEEEECCCCCEEEEEEEeeceecCCCCcEeeCHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEeCC
Confidence 3589999999999999999876543 222222111 12445566666665543 35888888876
No 53
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=76.43 E-value=12 Score=25.61 Aligned_cols=88 Identities=8% Similarity=0.038 Sum_probs=51.8
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhccCCCCCCCCC-C
Q 030509 64 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK-T 142 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~~~~~~k-~ 142 (176)
++..+.+.+..++.||+.+-+. +..+ .++++.|.+....+++||+++-...+...+.+.+. .|...--.| -
T Consensus 41 ~~a~~~l~~~~~dlii~D~~l~-~~~g------~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~-~ga~~~l~Kp~ 112 (144)
T 3kht_A 41 AKALYQVQQAKYDLIILDIGLP-IANG------FEVMSAVRKPGANQHTPIVILTDNVSDDRAKQCMA-AGASSVVDKSS 112 (144)
T ss_dssp HHHHHHHTTCCCSEEEECTTCG-GGCH------HHHHHHHHSSSTTTTCCEEEEETTCCHHHHHHHHH-TTCSEEEECCT
T ss_pred HHHHHHhhcCCCCEEEEeCCCC-CCCH------HHHHHHHHhcccccCCCEEEEeCCCCHHHHHHHHH-cCCCEEEECCC
Confidence 5556677888999999996544 1111 35677777521246899999887777777666654 444322222 2
Q ss_pred -CCcHHHHHH--HHHHHHhh
Q 030509 143 -ILDKFAAVG--ILQEYLDN 159 (176)
Q Consensus 143 -~iD~~AA~i--ILq~yL~~ 159 (176)
..+.+.+++ +++.|...
T Consensus 113 ~~~~~l~~~i~~~l~~~~~~ 132 (144)
T 3kht_A 113 NNVTDFYGRIYAIFSYWLTV 132 (144)
T ss_dssp TSHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHhc
Confidence 334444433 44555443
No 54
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703}
Probab=76.08 E-value=7.6 Score=34.42 Aligned_cols=60 Identities=12% Similarity=0.185 Sum_probs=40.0
Q ss_pred CCeEEEEecCCCeEEEEEec-CCCceeccceeeeC---CCCChhhHHHHHHHHHHhc----CCCEEEEe
Q 030509 21 RGRFLGLDVGDKYVGLSISD-PKNKIASPLSVLLR---KKNTIDLMAEDFRSLISEF----NLEGFIVG 81 (176)
Q Consensus 21 ~~~iLglD~G~kriGvAvsd-~~~~~a~Pl~~i~~---~~~~~~~~~~~L~~li~e~----~~~~iVVG 81 (176)
+..+||||+|+..+=+++.| ..+.+..- ...+. .+.+++.+|+.+.+.+++- +|.+|-|+
T Consensus 4 ~~~~lgIDiGtts~ka~l~d~~~G~i~~~-~~~~~~g~~e~d~~~~~~~i~~~l~~~~~~~~I~~Igis 71 (515)
T 3i8b_A 4 RTLVAGVDTSTQSCKVRVTDAETGELVRF-GQAKHPNGTSVDPSYWWSAFQEAAEQAGGLDDVSALAVG 71 (515)
T ss_dssp SCEEEEEEECSSEEEEEEEETTTCCEEEE-EEEECCSSSEECTHHHHHHHHHHHHHTTCSTTEEEEEEE
T ss_pred CcEEEEEEeccccEEEEEEECCCCeEEEE-EEEeCCCCceECHHHHHHHHHHHHHhcCCccCceEEEEe
Confidence 45799999999999999999 66644321 12221 1234567789999998763 45555554
No 55
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Probab=75.52 E-value=1.7 Score=39.01 Aligned_cols=24 Identities=21% Similarity=0.490 Sum_probs=20.3
Q ss_pred CCCCeEEEEecCCCeEEEEEecCC
Q 030509 19 SKRGRFLGLDVGDKYVGLSISDPK 42 (176)
Q Consensus 19 ~~~~~iLglD~G~kriGvAvsd~~ 42 (176)
|.|+.++|||+|+..++||+.++.
T Consensus 1 M~m~~~iGIDlGTt~s~va~~~~g 24 (554)
T 1yuw_A 1 MSKGPAVGIDLGTTYSCVGVFQHG 24 (554)
T ss_dssp CCSCCCEEEEECSSEEEEEEECSS
T ss_pred CCCCCEEEEEeCcccEEEEEEECC
Confidence 356789999999999999998753
No 56
>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans}
Probab=74.49 E-value=9.4 Score=33.66 Aligned_cols=61 Identities=13% Similarity=0.116 Sum_probs=40.7
Q ss_pred CeEEEEecCCCeEEEEEecCCCcee----ccceeeeCC---CCChhhHHHHHHHHHHh---cCCCEEEEec
Q 030509 22 GRFLGLDVGDKYVGLSISDPKNKIA----SPLSVLLRK---KNTIDLMAEDFRSLISE---FNLEGFIVGY 82 (176)
Q Consensus 22 ~~iLglD~G~kriGvAvsd~~~~~a----~Pl~~i~~~---~~~~~~~~~~L~~li~e---~~~~~iVVGl 82 (176)
..+||||+|+..+=+++.|..+.+. .|....+.. +.+++.+|+.+.+.+++ .+|.+|-|+-
T Consensus 6 ~~~lgIDiGTts~Ka~l~d~~G~i~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~~~~I~aIgis~ 76 (482)
T 3h6e_A 6 GATIVIDLGKTLSKVSLWDLDGRMLDRQVRPSIPLEIDGIRRLDAPDTGRWLLDVLSRYADHPVTTIVPVG 76 (482)
T ss_dssp --CEEEEECSSEEEEEEECTTSCEEEEEEEECCCEESSSCEECCHHHHHHHHHHHHHHTTTSCCCEEEEEE
T ss_pred ceEEEEEcCCCCeEEEEEECCCcEEEEEEecCCcccCCCceeECHHHHHHHHHHHHHHHHhcCCCEEEEec
Confidence 4689999999999999999776543 333332221 23566678888777766 4677777763
No 57
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1
Probab=73.96 E-value=1.5 Score=36.67 Aligned_cols=20 Identities=30% Similarity=0.665 Sum_probs=17.3
Q ss_pred CeEEEEecCCCeEEEEEecC
Q 030509 22 GRFLGLDVGDKYVGLSISDP 41 (176)
Q Consensus 22 ~~iLglD~G~kriGvAvsd~ 41 (176)
+.++|||+|+..+++|+.+.
T Consensus 2 ~~~vGIDlGTt~s~va~~~~ 21 (383)
T 1dkg_D 2 GKIIGIDLGTTNSCVAIMDG 21 (383)
T ss_dssp -CCCEEECCSSEEEEEEEET
T ss_pred CcEEEEEcCCCCEEEEEEEC
Confidence 46899999999999999864
No 58
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5
Probab=73.57 E-value=14 Score=29.63 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=21.1
Q ss_pred CeEEEEecCCCeEEEEEecCCCcee
Q 030509 22 GRFLGLDVGDKYVGLSISDPKNKIA 46 (176)
Q Consensus 22 ~~iLglD~G~kriGvAvsd~~~~~a 46 (176)
+.+||||.|+..|-+++.|..+.+.
T Consensus 3 ~~~lGiD~Gst~~k~~l~d~~g~i~ 27 (270)
T 1hux_A 3 IYTLGIDVGSTASKCIILKDGKEIV 27 (270)
T ss_dssp CEEEEEEECSSEEEEEEEETTTEEE
T ss_pred cEEEEEEeccceEEEEEEeCCCCEE
Confidence 4689999999999999999866443
No 59
>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Probab=73.53 E-value=7.7 Score=34.24 Aligned_cols=52 Identities=12% Similarity=0.116 Sum_probs=33.0
Q ss_pred CCeEEEEecCCCeEEEEEecCCCcee-c---cceeeeCC----CCChhhHHHHHHHHHHh
Q 030509 21 RGRFLGLDVGDKYVGLSISDPKNKIA-S---PLSVLLRK----KNTIDLMAEDFRSLISE 72 (176)
Q Consensus 21 ~~~iLglD~G~kriGvAvsd~~~~~a-~---Pl~~i~~~----~~~~~~~~~~L~~li~e 72 (176)
|..+||||+|+..+=+++.|..+.+. + |+.+.... +.+++.+|+.+.+.+++
T Consensus 4 m~~~lgIDiGtts~k~~l~d~~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~ 63 (511)
T 3hz6_A 4 AFYIATFDIGTTEVKAALADRDGGLHFQRSIALETYGDGNGPVEQDAGDWYDAVQRIASS 63 (511)
T ss_dssp CCEEEEEEECSSEEEEEEECTTSCEEEEEEEECCCBSTTSSCCEECHHHHHHHHHHHHHH
T ss_pred ccEEEEEEeCCCceEEEEECCCCCEEEEEEeecceecCCCCCEEECHHHHHHHHHHHHHH
Confidence 45799999999999999999876543 2 22211111 23455667766666543
No 60
>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis}
Probab=73.03 E-value=9.8 Score=33.28 Aligned_cols=62 Identities=15% Similarity=0.097 Sum_probs=37.7
Q ss_pred CeEEEEecCCCeEEEEEecCCCcee----ccceeeeCC----CCChhhHHHHHHHHHHh---------cCCCEEEEecc
Q 030509 22 GRFLGLDVGDKYVGLSISDPKNKIA----SPLSVLLRK----KNTIDLMAEDFRSLISE---------FNLEGFIVGYP 83 (176)
Q Consensus 22 ~~iLglD~G~kriGvAvsd~~~~~a----~Pl~~i~~~----~~~~~~~~~~L~~li~e---------~~~~~iVVGlP 83 (176)
..+||||+|+..+=+++.|..+.+. .|....... ..+++.+|+.+.+.+++ .+|.+|-|+-|
T Consensus 3 ~~~lgiDiGtt~~k~~l~d~~g~~~~~~~~~~~~~~p~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~i~~Igis~~ 81 (497)
T 2zf5_O 3 KFVLSLDEGTTSARAIIFDRESNIHGIGQYEFPQHYPRPGWVEHNPEEIWDAQLRAIKDAIQSARIEPNQIAAIGVTNQ 81 (497)
T ss_dssp CEEEEEEECSSEEEEEEECTTCCEEEEEEEECCCBCCSTTCCEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEEC
T ss_pred cEEEEEecCCchhEEEEECCCCCEEEEEEeccceecCCCCcEEECHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEecC
Confidence 4689999999999999999876542 222211111 12445566666655543 34666766654
No 61
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A*
Probab=72.64 E-value=7.4 Score=34.68 Aligned_cols=52 Identities=13% Similarity=0.280 Sum_probs=32.2
Q ss_pred CCCeEEEEecCCCeEEEEEecCCCcee----ccceeeeCC----CCChhhHHHHHHHHHH
Q 030509 20 KRGRFLGLDVGDKYVGLSISDPKNKIA----SPLSVLLRK----KNTIDLMAEDFRSLIS 71 (176)
Q Consensus 20 ~~~~iLglD~G~kriGvAvsd~~~~~a----~Pl~~i~~~----~~~~~~~~~~L~~li~ 71 (176)
.+..+||||+|+..+=+++.|..+.+. .|+.+.... +.+++.+|+.+.+.++
T Consensus 3 ~~~~~lgIDiGtts~ka~l~d~~G~il~~~~~~~~~~~p~~g~~eqdp~~~~~~~~~~i~ 62 (554)
T 3l0q_A 3 LASYFIGVDVGTGSARAGVFDLQGRMVGQASREITMFKPKADFVEQSSENIWQAVCNAVR 62 (554)
T ss_dssp -CCEEEEEEECSSEEEEEEEETTSCEEEEEEEECCCEEEETTEEEECHHHHHHHHHHHHH
T ss_pred CCcEEEEEEECcccEEEEEECCCCCEEEEEEEecccccCCCCccccCHHHHHHHHHHHHH
Confidence 346799999999999999999876543 233222111 2244556666555443
No 62
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}
Probab=70.86 E-value=2.6 Score=35.61 Aligned_cols=20 Identities=10% Similarity=0.315 Sum_probs=16.9
Q ss_pred CCCeEEEEecCCCeEEEEEe
Q 030509 20 KRGRFLGLDVGDKYVGLSIS 39 (176)
Q Consensus 20 ~~~~iLglD~G~kriGvAvs 39 (176)
+.+.++|||+|+..+++|+.
T Consensus 11 m~~~vvGIDlGTt~s~va~~ 30 (409)
T 4gni_A 11 GERVVIGITFGNSNSSIAHT 30 (409)
T ss_dssp --CCEEEEEECSSEEEEEEE
T ss_pred CCCcEEEEEcCCCeEEEEEE
Confidence 34679999999999999997
No 63
>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP}
Probab=70.14 E-value=12 Score=32.83 Aligned_cols=61 Identities=10% Similarity=0.142 Sum_probs=38.1
Q ss_pred eEEEEecCCCeEEEEEecCCCcee----ccceeeeCC----CCChhhHHHHHHHHHHh---------cCCCEEEEecc
Q 030509 23 RFLGLDVGDKYVGLSISDPKNKIA----SPLSVLLRK----KNTIDLMAEDFRSLISE---------FNLEGFIVGYP 83 (176)
Q Consensus 23 ~iLglD~G~kriGvAvsd~~~~~a----~Pl~~i~~~----~~~~~~~~~~L~~li~e---------~~~~~iVVGlP 83 (176)
.+||||+|+..+=+++.|..+.+. .|....... ..+++.+|+.+.+.+++ .+|.+|-|+-|
T Consensus 3 ~~lgiDiGtts~k~~l~d~~G~i~~~~~~~~~~~~p~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~~i~~Igis~~ 80 (504)
T 2d4w_A 3 YVLAIDQGTTSSRAIVFDHSGEIYSTGQLEHDQIFPRAGWVEHNPEQIWNNVREVVGLALTRGNLTHEDIAAVGITNQ 80 (504)
T ss_dssp EEEEEEECSSEEEEEEECTTSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEEC
T ss_pred EEEEEecCCcceEEEEECCCCCEEEEEEEecceecCCCCceeECHHHHHHHHHHHHHHHHHHcCCCcccEEEEEEeCC
Confidence 589999999999999999877543 222211111 12445566666665543 24667777765
No 64
>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*
Probab=70.11 E-value=9.3 Score=33.48 Aligned_cols=62 Identities=11% Similarity=0.060 Sum_probs=37.9
Q ss_pred CeEEEEecCCCeEEEEEecCCCcee----ccceeeeCC----CCChhhHHHHHHHHHHh-----------cCCCEEEEec
Q 030509 22 GRFLGLDVGDKYVGLSISDPKNKIA----SPLSVLLRK----KNTIDLMAEDFRSLISE-----------FNLEGFIVGY 82 (176)
Q Consensus 22 ~~iLglD~G~kriGvAvsd~~~~~a----~Pl~~i~~~----~~~~~~~~~~L~~li~e-----------~~~~~iVVGl 82 (176)
..+||||+|+..|=+++.|..+.+. .|....... ..+++.+|+.+.+.+++ .+|.+|-|+-
T Consensus 4 ~~~lgIDiGtT~~k~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~~~~i~~Igis~ 83 (503)
T 2w40_A 4 NVILSIDQSTQSTKVFFYDEELNIVHSNNLNHEQKCLKPGWYEHDPIEIMTNLYNLMNEGIKVLKDKYTSVIIKCIGITN 83 (503)
T ss_dssp EEEEEEEECSSEEEEEEEETTCCEEEEEEEECCCBCCSTTCCEECHHHHHHHHHHHHHHHHHHHHHHSSSCEEEEEEEEE
T ss_pred cEEEEEEeCCcceEEEEECCCCCEEEEEEEeeeeecCCCCcEEECHHHHHHHHHHHHHHHHHHhhcCCCccceEEEEEcC
Confidence 3689999999999999999876543 222211111 12445566666655543 2366666665
Q ss_pred c
Q 030509 83 P 83 (176)
Q Consensus 83 P 83 (176)
|
T Consensus 84 ~ 84 (503)
T 2w40_A 84 Q 84 (503)
T ss_dssp C
T ss_pred C
Confidence 5
No 65
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=70.04 E-value=2.6 Score=35.41 Aligned_cols=22 Identities=18% Similarity=0.373 Sum_probs=18.7
Q ss_pred CCeEEEEecCCCeEEEEEecCC
Q 030509 21 RGRFLGLDVGDKYVGLSISDPK 42 (176)
Q Consensus 21 ~~~iLglD~G~kriGvAvsd~~ 42 (176)
.+.++|||+|+..+++|+.+..
T Consensus 22 ~~~viGID~GTt~s~va~~~~g 43 (404)
T 3i33_A 22 SMPAIGIDLGTTYSCVGVFQHG 43 (404)
T ss_dssp -CCCEEEEECSSEEEEEEEETT
T ss_pred cCCEEEEEcCCccEEEEEEECC
Confidence 4679999999999999998754
No 66
>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O
Probab=70.03 E-value=10 Score=33.36 Aligned_cols=62 Identities=16% Similarity=0.202 Sum_probs=37.8
Q ss_pred CCeEEEEecCCCeEEEEEecCCCcee----ccceeeeCC----CCChhhHHHHHHHHH----Hh-----cCCCEEEEec
Q 030509 21 RGRFLGLDVGDKYVGLSISDPKNKIA----SPLSVLLRK----KNTIDLMAEDFRSLI----SE-----FNLEGFIVGY 82 (176)
Q Consensus 21 ~~~iLglD~G~kriGvAvsd~~~~~a----~Pl~~i~~~----~~~~~~~~~~L~~li----~e-----~~~~~iVVGl 82 (176)
+..+||||+|+..+=+++.|..+.+. .|+...... +.+++.+|+.+.+.+ ++ .+|.+|-|+-
T Consensus 4 ~~~~lgIDiGtts~k~~l~d~~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~~~~~~~~~~~I~~Igis~ 82 (506)
T 3h3n_X 4 KNYVMAIDQGTTSSRAIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIESGIRPEAIAGIGITN 82 (506)
T ss_dssp CCEEEEEEECSSEEEEEEEETTSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEE
T ss_pred CCEEEEEEcCCCceEEEEECCCCCEEEEEEEecCccCCCCCcEEECHHHHHHHHHHHHHHHHHHcCCChhheEEEEeeC
Confidence 35799999999999999999877543 232222111 234455666665544 33 3466666653
No 67
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP, chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae} PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Probab=68.71 E-value=3.3 Score=34.46 Aligned_cols=22 Identities=23% Similarity=0.576 Sum_probs=18.7
Q ss_pred CCeEEEEecCCCeEEEEEecCC
Q 030509 21 RGRFLGLDVGDKYVGLSISDPK 42 (176)
Q Consensus 21 ~~~iLglD~G~kriGvAvsd~~ 42 (176)
+..++|||+|+..+++|+.+..
T Consensus 17 ~~~viGID~GTt~s~va~~~~g 38 (394)
T 3qfu_A 17 YGTVIGIDLGTTYSCVAVMKNG 38 (394)
T ss_dssp CCSCEEEEECSSEEEEEEECSS
T ss_pred CCCEEEEEeCcCcEEEEEEECC
Confidence 3578999999999999998643
No 68
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*
Probab=67.94 E-value=9.6 Score=33.13 Aligned_cols=63 Identities=6% Similarity=0.105 Sum_probs=39.3
Q ss_pred CCCeEEEEecCCCeEEEEEecCCCce-ec---ccee-----eeCC---CCChhhHHHHHHHHHHh-----cCCCEEEEec
Q 030509 20 KRGRFLGLDVGDKYVGLSISDPKNKI-AS---PLSV-----LLRK---KNTIDLMAEDFRSLISE-----FNLEGFIVGY 82 (176)
Q Consensus 20 ~~~~iLglD~G~kriGvAvsd~~~~~-a~---Pl~~-----i~~~---~~~~~~~~~~L~~li~e-----~~~~~iVVGl 82 (176)
.+..+||||+|+..+=+++.|..+.+ ++ ++.. .+.. ..+++.+++.+.+.+++ .+|.+|=|+-
T Consensus 2 ~~~~~lgiDiGtts~k~~l~d~~g~~~~~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~~~~~~~~~~~i~~Igis~ 81 (489)
T 2uyt_A 2 TFRNCVAVDLGASSGRVMLARYERECRSLTLREIHRFNNGLHSQNGYVTWDVDSLESAIRLGLNKVCAAGIAIDSIGIDT 81 (489)
T ss_dssp CCEEEEEEEECSSEEEEEEEEEEGGGTEEEEEEEEEEECCCEEETTEEECCHHHHHHHHHHHHHHHHHTTCCCCEEEEEE
T ss_pred CcceEEEEEecCCCceEEEEEecCccceEEEEEEeecCCCccccCCeEEECHHHHHHHHHHHHHHHHhCCCCceEEEEec
Confidence 45579999999999999998866432 21 1110 1111 12445667888877765 2577776654
No 69
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Probab=67.77 E-value=17 Score=31.52 Aligned_cols=61 Identities=10% Similarity=0.219 Sum_probs=38.5
Q ss_pred EEEEecCCCeEEEEEecCCCcee-c---cceeeeCC----CCChhhHHHHHHHHHHh-------cCCCEEEEeccC
Q 030509 24 FLGLDVGDKYVGLSISDPKNKIA-S---PLSVLLRK----KNTIDLMAEDFRSLISE-------FNLEGFIVGYPF 84 (176)
Q Consensus 24 iLglD~G~kriGvAvsd~~~~~a-~---Pl~~i~~~----~~~~~~~~~~L~~li~e-------~~~~~iVVGlPl 84 (176)
+||||+|+..+=+++.|..+.+. + |..+.... +.+++.+|+.+.+.+++ .++.+|-|+-|-
T Consensus 2 ~lgiDiGtt~~k~~l~d~~g~~l~~~~~~~~~~~p~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~i~~Igis~~~ 77 (484)
T 2itm_A 2 YIGIDLGTSGVKVILLNEQGEVVAAQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQHSLQDVKALGIAGQM 77 (484)
T ss_dssp EEEEEECSSEEEEEEECTTSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHSCCTTCCEEEEEECS
T ss_pred EEEEEecCcccEEEEECCCCCEEEEEEeccccccCCCCCEeECHHHHHHHHHHHHHHHHHhCCccceEEEEEcCCc
Confidence 69999999999999999776443 2 22111111 12445567766666543 257888887654
No 70
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=66.14 E-value=4.4 Score=36.71 Aligned_cols=20 Identities=30% Similarity=0.665 Sum_probs=17.9
Q ss_pred CeEEEEecCCCeEEEEEecC
Q 030509 22 GRFLGLDVGDKYVGLSISDP 41 (176)
Q Consensus 22 ~~iLglD~G~kriGvAvsd~ 41 (176)
+.++|||+|+..++||+.+.
T Consensus 2 ~~viGIDlGTT~S~Va~~~~ 21 (605)
T 4b9q_A 2 GKIIGIDLGTTNSCVAIMDG 21 (605)
T ss_dssp CCEEEEECCSSEEEEEEEET
T ss_pred CcEEEEEcCCCcEEEEEEEC
Confidence 67999999999999999754
No 71
>3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=65.09 E-value=14 Score=32.61 Aligned_cols=50 Identities=14% Similarity=0.119 Sum_probs=31.6
Q ss_pred CCeEEEEecCCCeEEEEEecCCCcee----ccceeeeCCC----CChhhHHHHHHHHH
Q 030509 21 RGRFLGLDVGDKYVGLSISDPKNKIA----SPLSVLLRKK----NTIDLMAEDFRSLI 70 (176)
Q Consensus 21 ~~~iLglD~G~kriGvAvsd~~~~~a----~Pl~~i~~~~----~~~~~~~~~L~~li 70 (176)
+.-+||||+|+.-+=+++-|..+.+. .++.++..+. .+++.+|+.+.+.+
T Consensus 3 kkYvlgID~GTss~Ka~l~d~~G~~va~~~~~~~~~~p~~G~~Eqdp~~~w~~~~~~i 60 (526)
T 3ezw_A 3 KKYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTL 60 (526)
T ss_dssp CCEEEEEEECSSEEEEEEECTTCCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHH
T ss_pred ceEEEEEEccccceeeeEEcCCCCEEEEEEEecCcccCCCCcEEECHHHHHHHHHHHH
Confidence 35689999999999999988876543 3343332221 24555666544443
No 72
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=64.47 E-value=27 Score=28.95 Aligned_cols=96 Identities=6% Similarity=0.065 Sum_probs=44.0
Q ss_pred EEEEecCCCeEEEEEecCCCceeccceeeeCCCCChh-hHHHHHHHHHHhcCCCEEEEeccCCCCCCch--------HHH
Q 030509 24 FLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTID-LMAEDFRSLISEFNLEGFIVGYPFNRQQNAA--------DAV 94 (176)
Q Consensus 24 iLglD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~-~~~~~L~~li~e~~~~~iVVGlPl~dG~~s~--------~~~ 94 (176)
--|+|.|+-+.+...- -.|.++-.++.+. .+...| ..++++.+.+-+..+++|++. ||.++ ..+
T Consensus 8 ~~~~~~~~~~~~~~~~-~~Gv~~a~vTPf~-~dg~iD~~~l~~lv~~li~~Gv~Gl~v~-----GtTGE~~~Ls~~Er~~ 80 (314)
T 3qze_A 8 SSGVDLGTENLYFQSM-IAGSMVALVTPFD-AQGRLDWDSLAKLVDFHLQEGTNAIVAV-----GTTGESATLDVEEHIQ 80 (314)
T ss_dssp ---------------C-CCEEEEECCCCBC-TTSCBCHHHHHHHHHHHHHHTCCEEEES-----SGGGTGGGCCHHHHHH
T ss_pred cccccccccccccccc-CCeeEEeeECCCC-CCCCcCHHHHHHHHHHHHHcCCCEEEEC-----ccccChhhCCHHHHHH
Confidence 3579999988877743 2344444344443 233333 124555555566799999996 56554 222
Q ss_pred HHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhc
Q 030509 95 QVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLN 131 (176)
Q Consensus 95 ~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~ 131 (176)
.++..++... ..+||+.-==..||.++-++.+
T Consensus 81 v~~~~v~~~~-----grvpViaGvg~~st~eai~la~ 112 (314)
T 3qze_A 81 VIRRVVDQVK-----GRIPVIAGTGANSTREAVALTE 112 (314)
T ss_dssp HHHHHHHHHT-----TSSCEEEECCCSSHHHHHHHHH
T ss_pred HHHHHHHHhC-----CCCcEEEeCCCcCHHHHHHHHH
Confidence 2233333322 2578887666778888877655
No 73
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*
Probab=63.77 E-value=18 Score=31.21 Aligned_cols=64 Identities=16% Similarity=0.290 Sum_probs=40.1
Q ss_pred CCeEEEEecCCCeEEEEEecCC--CceeccceeeeCCC------CChhhHHHHHHHHHHh------cCCCE-EEEeccC
Q 030509 21 RGRFLGLDVGDKYVGLSISDPK--NKIASPLSVLLRKK------NTIDLMAEDFRSLISE------FNLEG-FIVGYPF 84 (176)
Q Consensus 21 ~~~iLglD~G~kriGvAvsd~~--~~~a~Pl~~i~~~~------~~~~~~~~~L~~li~e------~~~~~-iVVGlPl 84 (176)
...++|||+|+.+|=+.+++.. +.-.-.+...+... .+.+.+.+.|++.+++ .++.. +++|.|=
T Consensus 7 ~~~ivglDIGts~I~~vv~~~~~~~~~i~g~~~~~s~gv~~G~I~di~~~~~~I~~av~~ae~~~g~~i~~~v~v~i~g 85 (419)
T 4a2a_A 7 TVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEIKDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSS 85 (419)
T ss_dssp CCEEEEEEECSSEEEEEEEEC----CEEEEEEEEECCSEETTEESBHHHHHHHHHHHHHHHHHHHTSCCCSEEEEEECC
T ss_pred CCEEEEEEccCCEEEEEEEEEcCCCCEEEEEEEeccCCeeCCEEEcHHHHHHHHHHHHHHHHHHcCCCcCceEEEEEcC
Confidence 4578999999999988887643 21111112222211 2345567788888875 37888 9999864
No 74
>1kcf_A Hypothetical 30.2 KD protein C25G10.02 in chromosome I; beta-alpha-beta motif, RUVC resolvase family, hydrolase; 2.30A {Schizosaccharomyces pombe} SCOP: a.140.2.1 c.55.3.7
Probab=63.09 E-value=33 Score=27.97 Aligned_cols=65 Identities=20% Similarity=0.187 Sum_probs=38.8
Q ss_pred CeEEEEecCCCeEEEEEecCCCceecc-c---eeee---C--------CCCChhhHHHHHHHH----HHhcCCCEEEEec
Q 030509 22 GRFLGLDVGDKYVGLSISDPKNKIASP-L---SVLL---R--------KKNTIDLMAEDFRSL----ISEFNLEGFIVGY 82 (176)
Q Consensus 22 ~~iLglD~G~kriGvAvsd~~~~~a~P-l---~~i~---~--------~~~~~~~~~~~L~~l----i~e~~~~~iVVGl 82 (176)
.+|++||+|.++...|..++. ....| + ..+. . .+..+.........+ +..+.|+.|+|=-
T Consensus 40 ~sIlSID~GikNlAyc~l~~~-~~~~p~l~~W~kl~l~~~~~~~~~~k~~~~p~~~~~~a~~Li~~ll~~~~pd~vlIEr 118 (258)
T 1kcf_A 40 SRVLGIDLGIKNFSYCFASQN-EDSKVIIHNWSVENLTEKNGLDIQWTEDFQPSSMADLSIQLFNTLHEKFNPHVILMER 118 (258)
T ss_dssp SSEEEEEECSTTEEEEEEEEC-TTSCEEEEEEEEECTTSCCTTCCCCCCCCSHHHHHHHHHHHHHHHHHHHCCSEEEEEE
T ss_pred CcEEEEecCCCceEEEEEccC-CCCCCeeecceeeccccccccccccccCcChHHHHHHHHHHHHHhhccCCCCEEEEee
Confidence 399999999999999999852 11222 0 0110 0 112222222233333 4457999999998
Q ss_pred cCC-CC
Q 030509 83 PFN-RQ 87 (176)
Q Consensus 83 Pl~-dG 87 (176)
-.. +|
T Consensus 119 Qr~Rs~ 124 (258)
T 1kcf_A 119 QRYRSG 124 (258)
T ss_dssp CCCCTT
T ss_pred cCcccC
Confidence 777 77
No 75
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=61.86 E-value=26 Score=24.07 Aligned_cols=48 Identities=6% Similarity=0.034 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecC
Q 030509 63 AEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNE 119 (176)
Q Consensus 63 ~~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DE 119 (176)
.+.|.+.+++++++.||+|-. . +...+ .-..++++-.. .+.||..+-+
T Consensus 91 ~~~I~~~a~~~~~dliV~G~~-~----~~~~~-lgs~~~~vl~~---~~~pVlvv~~ 138 (141)
T 1jmv_A 91 GQVLSDAIEQYDVDLLVTGHH-Q----DFWSK-LMSSTRQVMNT---IKIDMLVVPL 138 (141)
T ss_dssp HHHHHHHHHHTTCCEEEEEEC-C----CCHHH-HHHHHHHHHTT---CCSEEEEEEC
T ss_pred HHHHHHHHHhcCCCEEEEeCC-C----chhhh-hcchHHHHHhc---CCCCEEEeeC
Confidence 588999999999999999955 3 22222 23566677653 3689887753
No 76
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=61.86 E-value=4.3 Score=36.76 Aligned_cols=21 Identities=29% Similarity=0.635 Sum_probs=17.1
Q ss_pred CeEEEEecCCCeEEEEEecCC
Q 030509 22 GRFLGLDVGDKYVGLSISDPK 42 (176)
Q Consensus 22 ~~iLglD~G~kriGvAvsd~~ 42 (176)
+.++|||+|+..++||+.+..
T Consensus 2 ~~viGIDlGTt~s~va~~~~g 22 (605)
T 2kho_A 2 GKIIGIDLGTTNSCVAIMDGT 22 (605)
T ss_dssp --CEEEECCSSEEEEEEEETT
T ss_pred CCEEEEEcCCcCEEEEEEECC
Confidence 468999999999999998753
No 77
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}
Probab=61.22 E-value=5.6 Score=35.05 Aligned_cols=21 Identities=14% Similarity=0.461 Sum_probs=18.3
Q ss_pred CeEEEEecCCCeEEEEEecCC
Q 030509 22 GRFLGLDVGDKYVGLSISDPK 42 (176)
Q Consensus 22 ~~iLglD~G~kriGvAvsd~~ 42 (176)
+.++|||+|+..+++|+.+..
T Consensus 2 ~~~iGIDlGTt~s~va~~~~g 22 (509)
T 2v7y_A 2 SKIIGIDLGTTNSCVAVLEGG 22 (509)
T ss_dssp CCEEEEEECSSEEEEEEEETT
T ss_pred CCEEEEEcCCceEEEEEEECC
Confidence 469999999999999998754
No 78
>2f9w_A Pantothenate kinase; COAA, transferase; HET: PAU; 1.90A {Pseudomonas aeruginosa} SCOP: c.55.1.13 c.55.1.13 PDB: 2f9t_A*
Probab=60.68 E-value=16 Score=29.94 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=17.7
Q ss_pred CCCeEEEEecCCCeEEEEEec
Q 030509 20 KRGRFLGLDVGDKYVGLSISD 40 (176)
Q Consensus 20 ~~~~iLglD~G~kriGvAvsd 40 (176)
...++|.||.|-.+|=+++-|
T Consensus 21 ~~~M~L~IDiGNT~ik~g~~~ 41 (271)
T 2f9w_A 21 MASMILELDCGNSLIKWRVIE 41 (271)
T ss_dssp --CEEEEEEECSSCEEEEEEE
T ss_pred ccCcEEEEEeCCCeeEEEEEe
Confidence 345799999999999999988
No 79
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=60.59 E-value=4.8 Score=37.15 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=18.2
Q ss_pred CeEEEEecCCCeEEEEEecCC
Q 030509 22 GRFLGLDVGDKYVGLSISDPK 42 (176)
Q Consensus 22 ~~iLglD~G~kriGvAvsd~~ 42 (176)
|.++|||+|+..+.||+.+..
T Consensus 2 m~~iGIDlGTtns~va~~~~g 22 (675)
T 3d2f_A 2 STPFGLDLGNNNSVLAVARNR 22 (675)
T ss_dssp CCCEEEECCSSEEEEEEEETT
T ss_pred CcEEEEEcCCCcEEEEEEECC
Confidence 569999999999999997653
No 80
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=60.17 E-value=27 Score=28.06 Aligned_cols=59 Identities=8% Similarity=0.152 Sum_probs=40.7
Q ss_pred HHHhcCCCEEEEeccCC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEE---ecCc--ccHHHHHHHhccCCCC
Q 030509 69 LISEFNLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAY---WNEG--FTSKGVELLLNPLDLH 136 (176)
Q Consensus 69 li~e~~~~~iVVGlPl~-dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~---~DEr--~TT~~A~~~l~~~g~~ 136 (176)
.+++..+++||+| -|+ ||+... ...+++.+.. .++|++| +|+- ---.+|.+.|.+.|+.
T Consensus 84 ~~~~~GadGvV~G-~Lt~dg~iD~--~~~~~Li~~a------~~~~vTFHRAFD~~~~~d~~~ale~L~~lGv~ 148 (224)
T 2bdq_A 84 RAVELESDALVLG-ILTSNNHIDT--EAIEQLLPAT------QGLPLVFHMAFDVIPKSDQKKSIDQLVALGFT 148 (224)
T ss_dssp HHHHTTCSEEEEC-CBCTTSSBCH--HHHHHHHHHH------TTCCEEECGGGGGSCTTTHHHHHHHHHHTTCC
T ss_pred HHHHcCCCEEEEe-eECCCCCcCH--HHHHHHHHHh------CCCeEEEECchhccCCcCHHHHHHHHHHcCCC
Confidence 4677899999999 577 998764 2233343322 1688887 4776 5567888888887774
No 81
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=57.74 E-value=36 Score=22.12 Aligned_cols=64 Identities=11% Similarity=0.028 Sum_probs=38.2
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhccCCC
Q 030509 64 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDL 135 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~ 135 (176)
++..+.+.+..++.+++.+-+.++..+ .++.+.|++....+.+||+++ ...+.....+.+ +.|.
T Consensus 39 ~~a~~~~~~~~~dlvi~d~~~~~~~~g------~~~~~~l~~~~~~~~~~ii~~-~~~~~~~~~~~~-~~g~ 102 (127)
T 2gkg_A 39 KGSVEQIRRDRPDLVVLAVDLSAGQNG------YLICGKLKKDDDLKNVPIVII-GNPDGFAQHRKL-KAHA 102 (127)
T ss_dssp HHHHHHHHHHCCSEEEEESBCGGGCBH------HHHHHHHHHSTTTTTSCEEEE-ECGGGHHHHHHS-TTCC
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCCH------HHHHHHHhcCccccCCCEEEE-ecCCchhHHHHH-HhCc
Confidence 444556677889999998654311122 246666765311358999988 666655555544 3444
No 82
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase, crsytal structure, structural genomics, protein structure initiative; HET: 5RP; 2.31A {Bacillus halodurans} PDB: 3qdk_A*
Probab=53.00 E-value=18 Score=32.23 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=20.5
Q ss_pred CCeEEEEecCCCeEEEEEecC-CCce
Q 030509 21 RGRFLGLDVGDKYVGLSISDP-KNKI 45 (176)
Q Consensus 21 ~~~iLglD~G~kriGvAvsd~-~~~~ 45 (176)
+..+||||+|+..+=+++.|. .+.+
T Consensus 4 ~~~~lgIDiGTts~Ka~l~d~~~G~i 29 (572)
T 3jvp_A 4 TKYTIGVDYGTESGRAVLIDLSNGQE 29 (572)
T ss_dssp -CEEEEEEECSSEEEEEEEETTTCCE
T ss_pred CCEEEEEecCCcceEEEEEECCCCeE
Confidence 357999999999999999997 6543
No 83
>3lyh_A Cobalamin (vitamin B12) biosynthesis CBIX protein; structural genomics, joint center for structural genomics, protein structure initiative; HET: MSE; 1.60A {Marinobacter aquaeolei}
Probab=52.88 E-value=39 Score=23.55 Aligned_cols=55 Identities=7% Similarity=0.049 Sum_probs=40.8
Q ss_pred CEEEEeccCCCCCCchHH-HHHHHHHHHHHhccCCCCCcEEEec-CcccHHHHHHHhccCCCC
Q 030509 76 EGFIVGYPFNRQQNAADA-VQVKLFIDDLSATKKLEDMKYAYWN-EGFTSKGVELLLNPLDLH 136 (176)
Q Consensus 76 ~~iVVGlPl~dG~~s~~~-~~v~~Fa~~L~~~~~~~~lpV~~~D-Er~TT~~A~~~l~~~g~~ 136 (176)
..++|| .||..+.+ ..+..|++.|++. .+.+.+-|++ ..-|-.+|-+.|...|.+
T Consensus 7 alllv~----HGS~~~~~~~~~~~l~~~l~~~--~~~V~~a~le~~~P~l~~~l~~l~~~G~~ 63 (126)
T 3lyh_A 7 QIILLA----HGSSDARWCETFEKLAEPTVES--IENAAIAYMELAEPSLDTIVNRAKGQGVE 63 (126)
T ss_dssp EEEEEE----CCCSCHHHHHHHHHHHHHHHHH--STTCEEEESSSSSSBHHHHHHHHHHTTCC
T ss_pred EEEEEe----CCCCCHHHHHHHHHHHHHHHhh--cCCEEEEEEeCCCCCHHHHHHHHHHcCCC
Confidence 468899 89988744 5578999999875 2466677887 666778887777766654
No 84
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Probab=52.71 E-value=32 Score=28.24 Aligned_cols=60 Identities=8% Similarity=0.159 Sum_probs=41.4
Q ss_pred HHHHhcCCCEEEEeccCC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEE---ecCcccHHHHHHHhccCCCC
Q 030509 68 SLISEFNLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAY---WNEGFTSKGVELLLNPLDLH 136 (176)
Q Consensus 68 ~li~e~~~~~iVVGlPl~-dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~---~DEr~TT~~A~~~l~~~g~~ 136 (176)
+.+++..+++||+| -|+ ||+... ...+++.+.. .++|++| +|+----.+|.+.|.+.|+.
T Consensus 80 ~~~~~~GadGvV~G-~Lt~dg~iD~--~~~~~Li~~a------~~~~vTFHRAfD~~~d~~~ale~L~~lG~~ 143 (256)
T 1twd_A 80 RTVRELGFPGLVTG-VLDVDGNVDM--PRMEKIMAAA------GPLAVTFHRAFDMCANPLYTLNNLAELGIA 143 (256)
T ss_dssp HHHHHTTCSEEEEC-CBCTTSSBCH--HHHHHHHHHH------TTSEEEECGGGGGCSCHHHHHHHHHHHTCC
T ss_pred HHHHHcCCCEEEEe-eECCCCCcCH--HHHHHHHHHh------CCCcEEEECchhccCCHHHHHHHHHHcCCC
Confidence 34677899999999 577 998764 2233343322 1688988 47777778888888876764
No 85
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=52.34 E-value=36 Score=24.20 Aligned_cols=50 Identities=14% Similarity=0.250 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCc
Q 030509 61 LMAEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEG 120 (176)
Q Consensus 61 ~~~~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr 120 (176)
++-+.|.++++.|+...+||= -...++++++.+|.+.|.. .+-|+.+|..
T Consensus 37 elkdsieelvkkynativvvv-----vddkewaekairfvkslga-----qvliiiydqd 86 (134)
T 2l69_A 37 ELKDSIEELVKKYNATIVVVV-----VDDKEWAEKAIRFVKSLGA-----QVLIIIYDQD 86 (134)
T ss_dssp HHHHHHHHHTTCCCCEEEEEE-----CSSHHHHHHHHHHHHHHCC-----CCEEEEECSC
T ss_pred HHHHHHHHHHHHhCCeEEEEE-----EccHHHHHHHHHHHHhcCC-----eEEEEEEeCc
Confidence 456889999999998877776 3456899999999999975 3455666643
No 86
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=51.20 E-value=52 Score=21.96 Aligned_cols=90 Identities=11% Similarity=-0.013 Sum_probs=54.3
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhccCCCCCCCCCCC
Q 030509 64 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~~~~~~k~~ 143 (176)
++..+.+.+..++.|++.+-+.+ ..+ .+|++.|.+. .+.+||+++-...+...+.+.+. .|...--. ++
T Consensus 41 ~~a~~~l~~~~~dlvi~d~~l~~-~~g------~~~~~~l~~~--~~~~~ii~~s~~~~~~~~~~~~~-~g~~~~l~-kP 109 (137)
T 3hdg_A 41 EEGERLFGLHAPDVIITDIRMPK-LGG------LEMLDRIKAG--GAKPYVIVISAFSEMKYFIKAIE-LGVHLFLP-KP 109 (137)
T ss_dssp HHHHHHHHHHCCSEEEECSSCSS-SCH------HHHHHHHHHT--TCCCEEEECCCCCCHHHHHHHHH-HCCSEECC-SS
T ss_pred HHHHHHHhccCCCEEEEeCCCCC-CCH------HHHHHHHHhc--CCCCcEEEEecCcChHHHHHHHh-CCcceeEc-CC
Confidence 55566677789999999976552 222 3566777763 46889998887777666655553 34332111 24
Q ss_pred CcHHHHHHHHHHHHhhhhhhc
Q 030509 144 LDKFAAVGILQEYLDNANRKV 164 (176)
Q Consensus 144 iD~~AA~iILq~yL~~~~~~~ 164 (176)
+|.-.=.-.++++++......
T Consensus 110 ~~~~~l~~~i~~~~~~~~~~~ 130 (137)
T 3hdg_A 110 IEPGRLMETLEDFRHIKLAKE 130 (137)
T ss_dssp CCHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHhcCC
Confidence 444444445567776654443
No 87
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=50.58 E-value=47 Score=29.64 Aligned_cols=61 Identities=20% Similarity=0.260 Sum_probs=37.4
Q ss_pred CCeEEEEec----CCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHHHHHhcCCCEEEEe
Q 030509 21 RGRFLGLDV----GDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 81 (176)
Q Consensus 21 ~~~iLglD~----G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~e~~~~~iVVG 81 (176)
...++|+|+ |...+++++.+..+..-.=+..+..+..+.+.+.+.|.++..+|++..|++=
T Consensus 419 ~~~~~GvD~S~G~~~D~tai~v~~~~g~~~~~v~~~~~~~~~~~~~~~~I~~l~~~y~~~~I~iD 483 (592)
T 3cpe_A 419 RKYIATLDCSEGRGQDYHALHIIDVTDDVWEQVGVLHSNTISHLILPDIVMRYLVEYNECPVYIE 483 (592)
T ss_dssp CCEEEEEECCSSBTTBCEEEEEEECSSSSEEEEEEEEESSSCTTTHHHHHHHHHHHTTSCCEEEE
T ss_pred ceEEEEEecCCCCCCCceEEEEEEcCCCceEEEEEEecCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 356899999 4567788877544311010122222222334567889999999998887774
No 88
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=50.31 E-value=58 Score=22.28 Aligned_cols=63 Identities=8% Similarity=-0.060 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhccCCC
Q 030509 63 AEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDL 135 (176)
Q Consensus 63 ~~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~ 135 (176)
.++..+.+.+..++.|++.+-+. +..+ .++++.|.+. .+.+||+++-...+...+.+.+. .|.
T Consensus 50 ~~~a~~~l~~~~~dlii~d~~l~-~~~g------~~~~~~l~~~--~~~~~ii~~s~~~~~~~~~~~~~-~g~ 112 (152)
T 3eul_A 50 GAAALELIKAHLPDVALLDYRMP-GMDG------AQVAAAVRSY--ELPTRVLLISAHDEPAIVYQALQ-QGA 112 (152)
T ss_dssp HHHHHHHHHHHCCSEEEEETTCS-SSCH------HHHHHHHHHT--TCSCEEEEEESCCCHHHHHHHHH-TTC
T ss_pred HHHHHHHHHhcCCCEEEEeCCCC-CCCH------HHHHHHHHhc--CCCCeEEEEEccCCHHHHHHHHH-cCC
Confidence 35566677788999999997554 2222 3566677763 46889998887777666655553 444
No 89
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=50.23 E-value=55 Score=21.94 Aligned_cols=91 Identities=13% Similarity=0.124 Sum_probs=51.7
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhccCCCCCCCCCCC
Q 030509 64 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~~~~~~k~~ 143 (176)
++..+.+.+..++.|++.+-+. +..+ .+|++.|++....+++||+++-...+.........+.|...--. ++
T Consensus 40 ~~a~~~l~~~~~dlvi~d~~l~-~~~g------~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~-kP 111 (140)
T 3grc_A 40 AQALEQVARRPYAAMTVDLNLP-DQDG------VSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAVSTWLE-KP 111 (140)
T ss_dssp HHHHHHHHHSCCSEEEECSCCS-SSCH------HHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCCCEEEC-SS
T ss_pred HHHHHHHHhCCCCEEEEeCCCC-CCCH------HHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCCCEEEe-CC
Confidence 4556677888999999987555 2222 35667776521235899999877666555542334455433212 23
Q ss_pred CcHHHHHHHHHHHHhhhhh
Q 030509 144 LDKFAAVGILQEYLDNANR 162 (176)
Q Consensus 144 iD~~AA~iILq~yL~~~~~ 162 (176)
++.-.=.-.++..++....
T Consensus 112 ~~~~~l~~~i~~~l~~~~~ 130 (140)
T 3grc_A 112 IDENLLILSLHRAIDNMAE 130 (140)
T ss_dssp CCHHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHhcCC
Confidence 4444444445666655443
No 90
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=49.74 E-value=28 Score=28.34 Aligned_cols=43 Identities=12% Similarity=0.104 Sum_probs=34.5
Q ss_pred chHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhccCCCC
Q 030509 90 AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH 136 (176)
Q Consensus 90 s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~~ 136 (176)
.+..+.+.++.+.+++. +++++|+++.+++..|+.+-.+.|.+
T Consensus 211 eps~~~l~~l~~~ik~~----~v~~if~e~~~~~~~~~~la~~~g~~ 253 (286)
T 3gi1_A 211 EPSPRQLKEIQDFVKEY----NVKTIFAEDNVNPKIAHAIAKSTGAK 253 (286)
T ss_dssp -CCHHHHHHHHHHHHHT----TCCEEEECTTSCTHHHHHHHHTTTCE
T ss_pred CCCHHHHHHHHHHHHHc----CCCEEEEeCCCChHHHHHHHHHhCCe
Confidence 45677888888888874 79999999999999998877766653
No 91
>2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG; 2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB: 1hkg_A
Probab=49.54 E-value=14 Score=32.59 Aligned_cols=26 Identities=15% Similarity=0.310 Sum_probs=22.3
Q ss_pred CCCeEEEEecCCCeEEEEEecCCCce
Q 030509 20 KRGRFLGLDVGDKYVGLSISDPKNKI 45 (176)
Q Consensus 20 ~~~~iLglD~G~kriGvAvsd~~~~~ 45 (176)
..+.+||||+|.-.+=+++.+..+..
T Consensus 59 E~G~~laiDlGGTnirv~lV~~~G~~ 84 (457)
T 2yhx_A 59 QAGSFLAIVMGGGDLEVILISLAGRQ 84 (457)
T ss_dssp CCEEEEEEEECSSEEEEEEEEEETTE
T ss_pred ccceEEEEEeCCCeEEEEEEEeCCCe
Confidence 55789999999999999999876654
No 92
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=49.26 E-value=55 Score=22.00 Aligned_cols=58 Identities=10% Similarity=0.103 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhc
Q 030509 64 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLN 131 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~ 131 (176)
.+..+.+.+..++.||+.+ +.+. . ..++.+.|.+. .+++||+++-...+...+.+.+.
T Consensus 38 ~~a~~~l~~~~~dlvi~d~-~~~~-~------g~~~~~~l~~~--~~~~pii~ls~~~~~~~~~~~~~ 95 (142)
T 2qxy_A 38 QEAFTFLRREKIDLVFVDV-FEGE-E------SLNLIRRIREE--FPDTKVAVLSAYVDKDLIINSVK 95 (142)
T ss_dssp HHHHHHHTTSCCSEEEEEC-TTTH-H------HHHHHHHHHHH--CTTCEEEEEESCCCHHHHHHHHH
T ss_pred HHHHHHHhccCCCEEEEeC-CCCC-c------HHHHHHHHHHH--CCCCCEEEEECCCCHHHHHHHHH
Confidence 4556677778999999997 5421 1 13566667653 45799988876666655555543
No 93
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=48.92 E-value=61 Score=22.15 Aligned_cols=63 Identities=6% Similarity=-0.024 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhccCCC
Q 030509 63 AEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDL 135 (176)
Q Consensus 63 ~~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~ 135 (176)
.++..+.+.+..++.|++.+-+.+ ..+ ..+++.|.+. .+++||+++-...+...+.+.+. .|.
T Consensus 55 ~~~al~~l~~~~~dlii~D~~l~~-~~g------~~~~~~l~~~--~~~~~ii~ls~~~~~~~~~~~~~-~g~ 117 (150)
T 4e7p_A 55 GQEAIQLLEKESVDIAILDVEMPV-KTG------LEVLEWIRSE--KLETKVVVVTTFKRAGYFERAVK-AGV 117 (150)
T ss_dssp HHHHHHHHTTSCCSEEEECSSCSS-SCH------HHHHHHHHHT--TCSCEEEEEESCCCHHHHHHHHH-TTC
T ss_pred HHHHHHHhhccCCCEEEEeCCCCC-CcH------HHHHHHHHHh--CCCCeEEEEeCCCCHHHHHHHHH-CCC
Confidence 356667778889999999976552 222 3566677663 46899998887777766666654 344
No 94
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=47.92 E-value=1.8e+02 Score=27.96 Aligned_cols=55 Identities=13% Similarity=0.237 Sum_probs=38.6
Q ss_pred CCeEEEEec----CCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHHHHHhcCCCEEEEe
Q 030509 21 RGRFLGLDV----GDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 81 (176)
Q Consensus 21 ~~~iLglD~----G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~e~~~~~iVVG 81 (176)
...++||-. +.+++|+|..|..+.-.. +.-+... .....|...+...+|..|++.
T Consensus 144 ~~~l~AIk~~~~~~~~~~Gla~~D~stge~~-~~~~~d~-----~~~~~l~~~l~~~~P~Eil~~ 202 (934)
T 3thx_A 144 SIGVVGVKMSAVDGQRQVGVGYVDSIQRKLG-LCEFPDN-----DQFSNLEALLIQIGPKECVLP 202 (934)
T ss_dssp -CCEEEEEECCSSSSCEEEEEEEETTTTEEE-EEEEECC-----TTCHHHHHHHHHHCCSEEEEE
T ss_pred cceEEEEEEeecCCCcEEEEEEEECCCCeEE-EEecCCc-----hHHHHHHHHHHhCCCeEEEee
Confidence 357888877 678999999997654333 2233221 114678888899999999997
No 95
>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma mansoni} SCOP: c.55.1.3 c.55.1.3
Probab=47.22 E-value=26 Score=30.66 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=20.9
Q ss_pred CCCeEEEEecCCCeEEEEEecCCC
Q 030509 20 KRGRFLGLDVGDKYVGLSISDPKN 43 (176)
Q Consensus 20 ~~~~iLglD~G~kriGvAvsd~~~ 43 (176)
..|.+||||+|.-++=|++.+..+
T Consensus 66 E~G~~lalDlGGTn~Rv~~V~l~G 89 (451)
T 1bdg_A 66 ETGNFLALDLGGTNYRVLSVTLEG 89 (451)
T ss_dssp CCEEEEEEEESSSSEEEEEEEECC
T ss_pred ccceEEEEEeCCCeEEEEEEecCC
Confidence 348899999999999999988766
No 96
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=46.44 E-value=37 Score=27.38 Aligned_cols=44 Identities=11% Similarity=0.090 Sum_probs=36.0
Q ss_pred CchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhccCCCC
Q 030509 89 NAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH 136 (176)
Q Consensus 89 ~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~~ 136 (176)
..+..+.+.++.+.+++. +++++|++..+++..|+.+-.+.|.+
T Consensus 205 ~eps~~~l~~l~~~ik~~----~v~~if~e~~~~~~~~~~ia~~~g~~ 248 (284)
T 2prs_A 205 IQPGAQRLHEIRTQLVEQ----KATCVFAEPQFRPAVVESVARGTSVR 248 (284)
T ss_dssp SCCCHHHHHHHHHHHHHT----TCCEEEECTTSCSHHHHHHTTTSCCE
T ss_pred CCCCHHHHHHHHHHHHHc----CCCEEEEeCCCChHHHHHHHHHcCCe
Confidence 346677888899989874 89999999999999999887766653
No 97
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=45.88 E-value=47 Score=25.41 Aligned_cols=54 Identities=6% Similarity=-0.047 Sum_probs=36.3
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEec
Q 030509 63 AEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWN 118 (176)
Q Consensus 63 ~~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~D 118 (176)
+.++.+.+. +.|++|++-|-.+|+.+..-+.+..+..+......|.+-|+.++-
T Consensus 58 ~~~l~~~i~--~aD~~ii~tPeYn~s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~ 111 (190)
T 3u7r_A 58 VLRLKDRIE--HSDAVLAITPEYNRSYPGMIKNAIDWATRPYGQNSWKGKPAAVIG 111 (190)
T ss_dssp HHHHHHHHH--TSSEEEEECCCBTTBCCHHHHHHHHHHHCSTTCCTTTTCEEEEEE
T ss_pred HHHHHHHHH--hCCcEEEechhhcccCCHHHHHHHHHhcccccCCccCCCEEEEEE
Confidence 566777666 789999999999899988776555544321111135577887763
No 98
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=45.72 E-value=40 Score=27.82 Aligned_cols=44 Identities=14% Similarity=0.144 Sum_probs=36.2
Q ss_pred CchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHh-----ccCCCC
Q 030509 89 NAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLL-----NPLDLH 136 (176)
Q Consensus 89 ~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l-----~~~g~~ 136 (176)
..+..+.+.++.+.+++. +++++|+++..++..++.+- ++.|.+
T Consensus 228 ~eps~~~l~~l~~~ik~~----~v~~If~e~~~~~~~~~~la~~~~A~e~gv~ 276 (313)
T 1toa_A 228 SEASAHDMQELAAFIAQR----KLPAIFIESSIPHKNVEALRDAVQARGHVVQ 276 (313)
T ss_dssp SCCCHHHHHHHHHHHHHT----TCSEEEEETTSCTHHHHHHHHHHHTTTCCCE
T ss_pred CCCCHHHHHHHHHHHHHc----CCCEEEEeCCCChHHHHHHHccchhhhcCCc
Confidence 345677888899989874 89999999999999999888 777753
No 99
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=44.48 E-value=36 Score=24.49 Aligned_cols=50 Identities=12% Similarity=0.045 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCCchHHH-HHHHHHHHHHhccCCCCCcEEEecC
Q 030509 63 AEDFRSLISEFNLEGFIVGYPFNRQQNAADAV-QVKLFIDDLSATKKLEDMKYAYWNE 119 (176)
Q Consensus 63 ~~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~-~v~~Fa~~L~~~~~~~~lpV~~~DE 119 (176)
.+.|.+.+++++++.||+|- -..+...+ ..-..++++-.. . ..||..+-.
T Consensus 108 ~~~I~~~a~~~~~DLIV~G~----~g~~~~~~~~lGSva~~vl~~--a-~~PVlvV~~ 158 (163)
T 1tq8_A 108 VDALVNLADEEKADLLVVGN----VGLSTIAGRLLGSVPANVSRR--A-KVDVLIVHT 158 (163)
T ss_dssp HHHHHHHHHHTTCSEEEEEC----CCCCSHHHHHTBBHHHHHHHH--T-TCEEEEECC
T ss_pred HHHHHHHHHhcCCCEEEECC----CCCCcccceeeccHHHHHHHh--C-CCCEEEEeC
Confidence 58899999999999999993 22222211 112234555442 2 689888753
No 100
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=44.27 E-value=76 Score=21.88 Aligned_cols=88 Identities=8% Similarity=-0.022 Sum_probs=51.0
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhccCCCCCCCCCCC
Q 030509 64 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~~~~~~k~~ 143 (176)
++..+.+.+..++.|++.+-+. +..+ .++++.|.+...++.+||+++-...+...+.+.+. .|...--. ++
T Consensus 41 ~~al~~l~~~~~dlii~D~~l~-~~~g------~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~-~g~~~~l~-KP 111 (154)
T 3gt7_A 41 REAVRFLSLTRPDLIISDVLMP-EMDG------YALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLE-CGADDFIT-KP 111 (154)
T ss_dssp HHHHHHHTTCCCSEEEEESCCS-SSCH------HHHHHHHHHSTTTTTSCEEEEECCCSHHHHHHHHH-HCCSEEEE-SS
T ss_pred HHHHHHHHhCCCCEEEEeCCCC-CCCH------HHHHHHHHhCCCcCCCCEEEEECCCChHHHHHHHH-CCCCEEEe-CC
Confidence 5556677888999999997655 2222 25666776532235789988876666666555543 33322111 24
Q ss_pred CcHHHHHHHHHHHHhhh
Q 030509 144 LDKFAAVGILQEYLDNA 160 (176)
Q Consensus 144 iD~~AA~iILq~yL~~~ 160 (176)
++.-.-.-.++..+...
T Consensus 112 ~~~~~l~~~i~~~l~~~ 128 (154)
T 3gt7_A 112 CKDVVLASHVKRLLSGV 128 (154)
T ss_dssp CCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 44444444455666544
No 101
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=44.11 E-value=53 Score=22.06 Aligned_cols=56 Identities=11% Similarity=0.091 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHH
Q 030509 64 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGV 126 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A 126 (176)
++..+.+.+..++.|++.+-+.++ .+ ..+++.|++...++++||+++-...+...+
T Consensus 36 ~~a~~~~~~~~~dlvi~D~~l~~~-~g------~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~ 91 (140)
T 3n53_A 36 KEALEQIDHHHPDLVILDMDIIGE-NS------PNLCLKLKRSKGLKNVPLILLFSSEHKEAI 91 (140)
T ss_dssp HHHHHHHHHHCCSEEEEETTC-------------CHHHHHHTSTTCTTCCEEEEECC----CT
T ss_pred HHHHHHHhcCCCCEEEEeCCCCCC-cH------HHHHHHHHcCcccCCCCEEEEecCCCHHHH
Confidence 455566677899999999766511 11 246667766422268898887655544433
No 102
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=44.08 E-value=69 Score=24.46 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=23.7
Q ss_pred HHHHHHhcCCCEEEEeccCC-CC-CCchHHHHHHHHHHHHHhccCCCCCcEEEecCcc
Q 030509 66 FRSLISEFNLEGFIVGYPFN-RQ-QNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGF 121 (176)
Q Consensus 66 L~~li~e~~~~~iVVGlPl~-dG-~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~ 121 (176)
+.+.+.+.++++||+- |.. +. .... .+.+.+.+. ++|++++|...
T Consensus 63 ~~~~l~~~~vdgiIi~-~~~~~~~~~~~------~~~~~~~~~----~iPvV~~~~~~ 109 (298)
T 3tb6_A 63 GLENLLSQHIDGLIVE-PTKSALQTPNI------GYYLNLEKN----GIPFAMINASY 109 (298)
T ss_dssp HHHHHHHTCCSEEEEC-CSSTTSCCTTH------HHHHHHHHT----TCCEEEESSCC
T ss_pred HHHHHHHCCCCEEEEe-cccccccCCcH------HHHHHHHhc----CCCEEEEecCc
Confidence 3344446789999985 332 11 1121 233455542 66777766443
No 103
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=44.03 E-value=39 Score=24.20 Aligned_cols=52 Identities=8% Similarity=-0.090 Sum_probs=30.3
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCc
Q 030509 63 AEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEG 120 (176)
Q Consensus 63 ~~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr 120 (176)
.+.|.+.+++++++.||+|-.-.++- .....-..++++-.. . +.||..+-..
T Consensus 113 ~~~I~~~a~~~~~DLIVmG~~g~~~~---~~~~~Gsva~~vl~~--a-~~pVlvv~~~ 164 (175)
T 2gm3_A 113 KDVICQEVKRVRPDFLVVGSRGLGRF---QKVFVGTVSAFCVKH--A-ECPVMTIKRN 164 (175)
T ss_dssp HHHHHHHHHHHCCSEEEEEECCCC-----------CHHHHHHHH--C-SSCEEEEECC
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCChh---hhhhcCchHHHHHhC--C-CCCEEEEcCC
Confidence 58899999999999999995322111 001112334455442 2 6898887543
No 104
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=43.78 E-value=67 Score=21.13 Aligned_cols=59 Identities=12% Similarity=0.114 Sum_probs=37.4
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhc
Q 030509 64 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLN 131 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~ 131 (176)
++..+.+.+..++.+++.+-+.+ ..+ ..+.+.|.+. .+.+||+++-...+.....+.+.
T Consensus 41 ~~a~~~l~~~~~dlvi~d~~l~~-~~g------~~~~~~l~~~--~~~~~ii~~t~~~~~~~~~~~~~ 99 (130)
T 3eod_A 41 VDALELLGGFTPDLMICDIAMPR-MNG------LKLLEHIRNR--GDQTPVLVISATENMADIAKALR 99 (130)
T ss_dssp HHHHHHHTTCCCSEEEECCC------C------HHHHHHHHHT--TCCCCEEEEECCCCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEecCCCC-CCH------HHHHHHHHhc--CCCCCEEEEEcCCCHHHHHHHHH
Confidence 45566778889999999976552 112 2566667663 45789988877666665555543
No 105
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=43.27 E-value=77 Score=21.69 Aligned_cols=87 Identities=10% Similarity=0.043 Sum_probs=51.5
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhccCCCCCCCCCCC
Q 030509 64 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~~~~~~k~~ 143 (176)
++..+.+.+..++.|++.+-+. +..+ .+|++.|.+. .+.+||+++-...+...+.+.+..++...--.| +
T Consensus 48 ~~a~~~l~~~~~dlvi~D~~l~-~~~g------~~~~~~l~~~--~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~K-P 117 (153)
T 3hv2_A 48 TQALQLLASREVDLVISAAHLP-QMDG------PTLLARIHQQ--YPSTTRILLTGDPDLKLIAKAINEGEIYRYLSK-P 117 (153)
T ss_dssp HHHHHHHHHSCCSEEEEESCCS-SSCH------HHHHHHHHHH--CTTSEEEEECCCCCHHHHHHHHHTTCCSEEECS-S
T ss_pred HHHHHHHHcCCCCEEEEeCCCC-cCcH------HHHHHHHHhH--CCCCeEEEEECCCCHHHHHHHHhCCCcceEEeC-C
Confidence 5556677788999999997655 2222 2466666653 468999999888777777666654423322122 3
Q ss_pred CcHHHHHHHHHHHHhhh
Q 030509 144 LDKFAAVGILQEYLDNA 160 (176)
Q Consensus 144 iD~~AA~iILq~yL~~~ 160 (176)
++.-.=.-.++..+...
T Consensus 118 ~~~~~l~~~i~~~l~~~ 134 (153)
T 3hv2_A 118 WDDQELLLALRQALEHQ 134 (153)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 44333333445555443
No 106
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=42.96 E-value=49 Score=21.95 Aligned_cols=55 Identities=5% Similarity=-0.126 Sum_probs=34.0
Q ss_pred HHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHh
Q 030509 67 RSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLL 130 (176)
Q Consensus 67 ~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l 130 (176)
.+.+.+..++.|++.+-+.+ ..+ .++++.|++. .+++||+++-...+...+.+.+
T Consensus 39 ~~~~~~~~~dlii~d~~l~~-~~g------~~~~~~l~~~--~~~~~ii~~s~~~~~~~~~~~~ 93 (134)
T 3f6c_A 39 VQRVETLKPDIVIIDVDIPG-VNG------IQVLETLRKR--QYSGIIIIVSAKNDHFYGKHCA 93 (134)
T ss_dssp HHHHHHHCCSEEEEETTCSS-SCH------HHHHHHHHHT--TCCSEEEEEECC---CTHHHHH
T ss_pred HHHHHhcCCCEEEEecCCCC-CCh------HHHHHHHHhc--CCCCeEEEEeCCCChHHHHHHH
Confidence 44556778999999976652 222 3566777763 4688998887666555554444
No 107
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=42.68 E-value=37 Score=28.00 Aligned_cols=44 Identities=16% Similarity=0.184 Sum_probs=35.6
Q ss_pred CchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhccCCCC
Q 030509 89 NAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH 136 (176)
Q Consensus 89 ~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~~ 136 (176)
..+..+.+.++.+.+++. +++++|+++..++..|+.+-.+.|.+
T Consensus 221 ~eps~~~l~~l~~~ik~~----~v~~If~e~~~~~~~~~~ia~e~g~~ 264 (312)
T 2o1e_A 221 QEPSAASLAKLKTYAKEH----NVKVIYFEEIASSKVADTLASEIGAK 264 (312)
T ss_dssp SCCCHHHHHHHHHHTTSS----CCCEEECSSCCCHHHHHHHHHHTCCE
T ss_pred CCCCHHHHHHHHHHHHHc----CCCEEEEeCCCChHHHHHHHHHhCCc
Confidence 446677888888888863 89999999999999999887777754
No 108
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=42.33 E-value=73 Score=21.13 Aligned_cols=60 Identities=8% Similarity=0.138 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCCCEEEEeccCC-C---CCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhc
Q 030509 64 EDFRSLISEFNLEGFIVGYPFN-R---QQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLN 131 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVGlPl~-d---G~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~ 131 (176)
++..+.+.+..++.+|+.+-+. + +..+ .++++.|.+. .+.+||+++-..-+...+.+.+.
T Consensus 37 ~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g------~~~~~~l~~~--~~~~~ii~ls~~~~~~~~~~~~~ 100 (140)
T 2qr3_A 37 VSLSTVLREENPEVVLLDMNFTSGINNGNEG------LFWLHEIKRQ--YRDLPVVLFTAYADIDLAVRGIK 100 (140)
T ss_dssp HHHHHHHHHSCEEEEEEETTTTC-----CCH------HHHHHHHHHH--CTTCCEEEEEEGGGHHHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEEeCCcCCCCCCCccH------HHHHHHHHhh--CcCCCEEEEECCCCHHHHHHHHH
Confidence 4556667778899999997553 1 2222 2456666653 45789888866555555555443
No 109
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=42.22 E-value=51 Score=26.61 Aligned_cols=43 Identities=14% Similarity=0.114 Sum_probs=35.1
Q ss_pred chHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhccCCCC
Q 030509 90 AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH 136 (176)
Q Consensus 90 s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~~ 136 (176)
.+..+.+.++.+.+++. +++++|+++..++..|+.+-.+.|.+
T Consensus 209 eps~~~l~~l~~~ik~~----~v~~if~e~~~~~~~~~~ia~~~g~~ 251 (284)
T 3cx3_A 209 EPSPRQLTEIQEFVKTY----KVKTIFTESNASSKVAETLVKSTGVG 251 (284)
T ss_dssp CCCSHHHHHHHHHHHHT----TCCCEEECSSSCCHHHHHHHSSSSCC
T ss_pred CCCHHHHHHHHHHHHHc----CCCEEEEeCCCCcHHHHHHHHHcCCe
Confidence 45567788888888874 79999999999999999987777654
No 110
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=42.09 E-value=66 Score=26.26 Aligned_cols=52 Identities=12% Similarity=0.066 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcCCCEEEEeccCC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccH
Q 030509 63 AEDFRSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTS 123 (176)
Q Consensus 63 ~~~L~~li~e~~~~~iVVGlPl~-dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT 123 (176)
++.|.+.+.+.++..|++--|.| .|..-+ .+++.++++ +. ++ ++.+||-++-
T Consensus 175 ~~~le~~l~~~~~~~vi~~~~~nptG~~~~-l~~l~~la~---~~----~~-~li~De~~~~ 227 (409)
T 3kki_A 175 CDHLRMLIQRHGPGIIVVDSIYSTLGTIAP-LAELVNISK---EF----GC-ALLVDESHSL 227 (409)
T ss_dssp HHHHHHHHHHHCSCEEEEESBCTTTCCBCC-HHHHHHHHH---HH----TC-EEEEECTTTT
T ss_pred HHHHHHHHHhcCCeEEEECCCCCCCCCcCC-HHHHHHHHH---Hc----CC-EEEEECCccc
Confidence 57888889888889999998888 888776 344444444 31 33 6678988754
No 111
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=41.98 E-value=81 Score=21.53 Aligned_cols=59 Identities=5% Similarity=-0.108 Sum_probs=38.5
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhc
Q 030509 64 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLN 131 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~ 131 (176)
.+..+.+.+..++.||+.+-+. +..+ .++++.|.+. .+.+||+++-...+...+.+.+.
T Consensus 41 ~~a~~~l~~~~~dlii~D~~l~-~~~g------~~~~~~l~~~--~~~~~ii~ls~~~~~~~~~~~~~ 99 (153)
T 3cz5_A 41 GEAYRLYRETTPDIVVMDLTLP-GPGG------IEATRHIRQW--DGAARILIFTMHQGSAFALKAFE 99 (153)
T ss_dssp HHHHHHHHTTCCSEEEECSCCS-SSCH------HHHHHHHHHH--CTTCCEEEEESCCSHHHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEecCCC-CCCH------HHHHHHHHHh--CCCCeEEEEECCCCHHHHHHHHH
Confidence 5556677788899999997554 2222 2456666653 35789988876666665555543
No 112
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=41.36 E-value=78 Score=21.19 Aligned_cols=59 Identities=5% Similarity=0.011 Sum_probs=37.8
Q ss_pred HHHHHHHH--hcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhc
Q 030509 64 EDFRSLIS--EFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLN 131 (176)
Q Consensus 64 ~~L~~li~--e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~ 131 (176)
++..+.+. +..++.|++.+-+.+ ..+ .+|++.|.+. .+.+||+++-...+...+.+.+.
T Consensus 37 ~~a~~~~~~~~~~~dlvi~d~~l~~-~~g------~~~~~~l~~~--~~~~~ii~ls~~~~~~~~~~~~~ 97 (143)
T 3jte_A 37 TEGLRIFTENCNSIDVVITDMKMPK-LSG------MDILREIKKI--TPHMAVIILTGHGDLDNAILAMK 97 (143)
T ss_dssp HHHHHHHHHTTTTCCEEEEESCCSS-SCH------HHHHHHHHHH--CTTCEEEEEECTTCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCCC-CcH------HHHHHHHHHh--CCCCeEEEEECCCCHHHHHHHHH
Confidence 33444555 578999999976652 222 2466666653 45889998887777666665554
No 113
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=41.01 E-value=66 Score=21.69 Aligned_cols=61 Identities=5% Similarity=-0.087 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhc
Q 030509 64 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLN 131 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~ 131 (176)
++..+.+.++.++.|++.+-+. |..+ .++++.|++....+.+||+++-...+...+.+.+.
T Consensus 38 ~~al~~~~~~~~dlvl~D~~lp-~~~g------~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~ 98 (136)
T 3t6k_A 38 EEALQQIYKNLPDALICDVLLP-GIDG------YTLCKRVRQHPLTKTLPILMLTAQGDISAKIAGFE 98 (136)
T ss_dssp HHHHHHHHHSCCSEEEEESCCS-SSCH------HHHHHHHHHSGGGTTCCEEEEECTTCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEeCCCC-CCCH------HHHHHHHHcCCCcCCccEEEEecCCCHHHHHHHHh
Confidence 4445566788999999986554 2222 24556665421134789998877766665555543
No 114
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=39.62 E-value=85 Score=21.11 Aligned_cols=61 Identities=10% Similarity=0.024 Sum_probs=39.1
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhc
Q 030509 64 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLN 131 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~ 131 (176)
++..+.+.+..++.||+.+-+. +..+ .++++.|.+....+.+||+++-...+.....+.+.
T Consensus 42 ~~a~~~l~~~~~dlii~d~~l~-~~~g------~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~ 102 (147)
T 2zay_A 42 IEAVPVAVKTHPHLIITEANMP-KISG------MDLFNSLKKNPQTASIPVIALSGRATAKEEAQLLD 102 (147)
T ss_dssp HHHHHHHHHHCCSEEEEESCCS-SSCH------HHHHHHHHTSTTTTTSCEEEEESSCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEEcCCCC-CCCH------HHHHHHHHcCcccCCCCEEEEeCCCCHHHHHHHHh
Confidence 4556666778899999997554 2222 25667776521245889988877666665555543
No 115
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A*
Probab=39.45 E-value=80 Score=25.98 Aligned_cols=89 Identities=19% Similarity=0.231 Sum_probs=54.9
Q ss_pred CCeEEEEecCCCeEEEEEecCCCceeccceeee---CCCC--------Ch---h---hHHHHHHHHHHhcCCCEEE-Eec
Q 030509 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLL---RKKN--------TI---D---LMAEDFRSLISEFNLEGFI-VGY 82 (176)
Q Consensus 21 ~~~iLglD~G~kriGvAvsd~~~~~a~Pl~~i~---~~~~--------~~---~---~~~~~L~~li~e~~~~~iV-VGl 82 (176)
.|++-+||.|+--|=+.|.+....-..++.... +-.. ++ + ..+....+++++++++.+. |+
T Consensus 11 ~m~~a~IDiGSns~rl~I~~~~~~~~~~i~~~k~~vrLg~g~~~~g~ls~eai~r~~~~L~~f~~~~~~~~v~~i~~vA- 89 (315)
T 1t6c_A 11 IMRVASIDIGSYSVRLTIAQIKDGKLSIILERGRITSLGTKVKETGRLQEDRIEETIQVLKEYKKLIDEFKVERVKAVA- 89 (315)
T ss_dssp CEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEEECCTTTTHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEE-
T ss_pred CcEEEEEEECcCcEEEEEEEEcCCcEEEEeeeeEEeecCCCccccCCcCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEE-
Confidence 358999999999999999986432222222111 1000 00 1 2246667778889998555 66
Q ss_pred cCCCCCCc-hHHHHHHHHHHHHHhccCCCCCcEEEec
Q 030509 83 PFNRQQNA-ADAVQVKLFIDDLSATKKLEDMKYAYWN 118 (176)
Q Consensus 83 Pl~dG~~s-~~~~~v~~Fa~~L~~~~~~~~lpV~~~D 118 (176)
|.. ..+.....|.+++++. .+++|..++
T Consensus 90 -----TsA~R~A~N~~~fl~~v~~~---~G~~i~vIs 118 (315)
T 1t6c_A 90 -----TEAIRRAKNAEEFLERVKRE---VGLVVEVIT 118 (315)
T ss_dssp -----CHHHHTSTTHHHHHHHHHHH---TCCCEEECC
T ss_pred -----cHHHHcCcCHHHHHHHHHHH---HCCCEEEcC
Confidence 321 2233446899999874 388888887
No 116
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Probab=39.08 E-value=15 Score=29.91 Aligned_cols=19 Identities=16% Similarity=0.317 Sum_probs=15.7
Q ss_pred CeEEEEecCCCeEEEEEec
Q 030509 22 GRFLGLDVGDKYVGLSISD 40 (176)
Q Consensus 22 ~~iLglD~G~kriGvAvsd 40 (176)
...+|||+|+..+-+++.+
T Consensus 3 ~~~igIDlGT~~s~v~~~~ 21 (344)
T 1jce_A 3 RKDIGIDLGTANTLVFLRG 21 (344)
T ss_dssp -CEEEEEECSSEEEEEETT
T ss_pred CceEEEEcCcCcEEEEECC
Confidence 3689999999999998754
No 117
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=39.01 E-value=91 Score=21.27 Aligned_cols=63 Identities=8% Similarity=0.085 Sum_probs=41.3
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhccCCC
Q 030509 64 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDL 135 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~ 135 (176)
.+..+.+.+..++.||+.+-+.+ ..+ ..+++.|.+. .+.+||+++-...+...+.+.+..+|.
T Consensus 41 ~~a~~~l~~~~~dlvi~d~~l~~-~~g------~~~~~~l~~~--~~~~~ii~ls~~~~~~~~~~~~~~g~~ 103 (154)
T 2rjn_A 41 LDALEALKGTSVQLVISDMRMPE-MGG------EVFLEQVAKS--YPDIERVVISGYADAQATIDAVNRGKI 103 (154)
T ss_dssp HHHHHHHTTSCCSEEEEESSCSS-SCH------HHHHHHHHHH--CTTSEEEEEECGGGHHHHHHHHHTTCC
T ss_pred HHHHHHHhcCCCCEEEEecCCCC-CCH------HHHHHHHHHh--CCCCcEEEEecCCCHHHHHHHHhccch
Confidence 55667777888999999976652 222 2456666653 458899888776666666666654434
No 118
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=38.82 E-value=91 Score=21.21 Aligned_cols=85 Identities=9% Similarity=-0.030 Sum_probs=41.9
Q ss_pred HHHHHHHHh-cCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhccCCCCCCCCCC
Q 030509 64 EDFRSLISE-FNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142 (176)
Q Consensus 64 ~~L~~li~e-~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~~~~~~k~ 142 (176)
++..+.+.+ ..++.+|+.+-+.+ ..+ .++++.|.+. .+.+||+++-..-+...+.+.+. .|...--.|
T Consensus 39 ~~a~~~l~~~~~~dlvi~d~~l~~-~~g------~~~~~~l~~~--~~~~~ii~ls~~~~~~~~~~~~~-~g~~~~l~k- 107 (154)
T 2qsj_A 39 SDALAFLEADNTVDLILLDVNLPD-AEA------IDGLVRLKRF--DPSNAVALISGETDHELIRAALE-AGADGFIPK- 107 (154)
T ss_dssp HHHHHHHHTTCCCSEEEECC-------C------HHHHHHHHHH--CTTSEEEEC-----CHHHHHHHH-TTCCBBCCT-
T ss_pred HHHHHHHhccCCCCEEEEeCCCCC-Cch------HHHHHHHHHh--CCCCeEEEEeCCCCHHHHHHHHH-ccCCEEEeC-
Confidence 555666677 88999999975541 112 2456666653 45789988866555555555443 444332222
Q ss_pred CCcHHHHHHHHHHHHhh
Q 030509 143 ILDKFAAVGILQEYLDN 159 (176)
Q Consensus 143 ~iD~~AA~iILq~yL~~ 159 (176)
+++.-.=.-.++..+..
T Consensus 108 p~~~~~L~~~l~~~~~~ 124 (154)
T 2qsj_A 108 SADPQVLIHAVSLILEG 124 (154)
T ss_dssp TSCHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHcC
Confidence 34433333334555543
No 119
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=38.82 E-value=29 Score=24.03 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCCCEEEEec
Q 030509 63 AEDFRSLISEFNLEGFIVGY 82 (176)
Q Consensus 63 ~~~L~~li~e~~~~~iVVGl 82 (176)
.+.|.+.+++++++.||+|-
T Consensus 98 ~~~I~~~a~~~~~dliV~G~ 117 (150)
T 3tnj_A 98 REEIIRIAEQENVDLIVVGS 117 (150)
T ss_dssp HHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEec
Confidence 58899999999999999994
No 120
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=38.53 E-value=1.1e+02 Score=24.28 Aligned_cols=53 Identities=11% Similarity=0.199 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCCCEEEEeccCC-CCCCchHHH--------------HHHHHHHHHHhccCCCCCcEEEe
Q 030509 63 AEDFRSLISEFNLEGFIVGYPFN-RQQNAADAV--------------QVKLFIDDLSATKKLEDMKYAYW 117 (176)
Q Consensus 63 ~~~L~~li~e~~~~~iVVGlPl~-dG~~s~~~~--------------~v~~Fa~~L~~~~~~~~lpV~~~ 117 (176)
+.++.+.+.+..+|.|-+|.|++ .--.++..+ .+-+.++.+++. +|++|+.+.
T Consensus 33 ~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~--~~~~Pi~~m 100 (262)
T 2ekc_A 33 SLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKE--FPDIPFLLM 100 (262)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTSCEEEE
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhh--cCCCCEEEE
Confidence 45666777788999999999997 323333332 334556677653 347898875
No 121
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=38.38 E-value=30 Score=24.41 Aligned_cols=21 Identities=14% Similarity=0.259 Sum_probs=18.8
Q ss_pred HHHHHHHHHhcCCCEEEEecc
Q 030509 63 AEDFRSLISEFNLEGFIVGYP 83 (176)
Q Consensus 63 ~~~L~~li~e~~~~~iVVGlP 83 (176)
.+.|.+.+++++++.||+|-.
T Consensus 109 ~~~I~~~a~~~~~dlIV~G~~ 129 (162)
T 1mjh_A 109 HEEIVKIAEDEGVDIIIMGSH 129 (162)
T ss_dssp HHHHHHHHHHTTCSEEEEESC
T ss_pred HHHHHHHHHHcCCCEEEEcCC
Confidence 588999999999999999954
No 122
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=37.85 E-value=97 Score=21.38 Aligned_cols=62 Identities=6% Similarity=-0.047 Sum_probs=40.0
Q ss_pred HHHHHHHHhc--CCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhccCCC
Q 030509 64 EDFRSLISEF--NLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDL 135 (176)
Q Consensus 64 ~~L~~li~e~--~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~ 135 (176)
++..+.+.+. .++.|++.+-+. +..+ .++++.|++. .+.+||+++-...+...+.+.+. .|.
T Consensus 71 ~~al~~l~~~~~~~dliilD~~l~-~~~g------~~~~~~lr~~--~~~~~ii~ls~~~~~~~~~~~~~-~g~ 134 (157)
T 3hzh_A 71 EEAVIKYKNHYPNIDIVTLXITMP-KMDG------ITCLSNIMEF--DKNARVIMISALGKEQLVKDCLI-KGA 134 (157)
T ss_dssp HHHHHHHHHHGGGCCEEEECSSCS-SSCH------HHHHHHHHHH--CTTCCEEEEESCCCHHHHHHHHH-TTC
T ss_pred HHHHHHHHhcCCCCCEEEEeccCC-CccH------HHHHHHHHhh--CCCCcEEEEeccCcHHHHHHHHH-cCC
Confidence 4555666666 789999987554 2222 2566667653 35889998887777666665554 343
No 123
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=37.43 E-value=89 Score=20.70 Aligned_cols=88 Identities=8% Similarity=0.045 Sum_probs=49.8
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhccCCCCCCCCCCC
Q 030509 64 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~~~~~~k~~ 143 (176)
++..+.+.+..++.||+.+-+. +..+ .++++.|.+....+.+||+++-...+.....+.+. .|...--. ++
T Consensus 44 ~~a~~~l~~~~~dlii~d~~l~-~~~g------~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~-~g~~~~l~-kP 114 (143)
T 3cnb_A 44 FDAGDLLHTVKPDVVMLDLMMV-GMDG------FSICHRIKSTPATANIIVIAMTGALTDDNVSRIVA-LGAETCFG-KP 114 (143)
T ss_dssp HHHHHHHHHTCCSEEEEETTCT-TSCH------HHHHHHHHTSTTTTTSEEEEEESSCCHHHHHHHHH-TTCSEEEE-SS
T ss_pred HHHHHHHHhcCCCEEEEecccC-CCcH------HHHHHHHHhCccccCCcEEEEeCCCCHHHHHHHHh-cCCcEEEe-CC
Confidence 4556667778899999997554 2222 25666776521245889988877666665555543 34332211 23
Q ss_pred CcHHHHHHHHHHHHhhh
Q 030509 144 LDKFAAVGILQEYLDNA 160 (176)
Q Consensus 144 iD~~AA~iILq~yL~~~ 160 (176)
++.-.-.-.++..+...
T Consensus 115 ~~~~~l~~~i~~~~~~~ 131 (143)
T 3cnb_A 115 LNFTLLEKTIKQLVEQK 131 (143)
T ss_dssp CCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 44433334445555443
No 124
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=37.42 E-value=60 Score=26.89 Aligned_cols=44 Identities=11% Similarity=0.229 Sum_probs=35.3
Q ss_pred CchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhccCCCC
Q 030509 89 NAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH 136 (176)
Q Consensus 89 ~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~~ 136 (176)
..+..+.+.++.+.+++. +++++|+++..++..|+.+-.+.|.+
T Consensus 235 ~eps~~~l~~l~~~ik~~----~v~~If~e~~~~~~~~~~iA~e~g~~ 278 (321)
T 1xvl_A 235 QQFTPKQVQTVIEEVKTN----NVPTIFCESTVSDKGQKQVAQATGAR 278 (321)
T ss_dssp CSCCHHHHHHHHHHHHTT----TCSEEEEETTSCSHHHHHHHTTTCCE
T ss_pred CCCCHHHHHHHHHHHHHc----CCcEEEEeCCCChHHHHHHHHhcCCc
Confidence 345667788888888873 79999999999999998887776654
No 125
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=37.39 E-value=80 Score=26.04 Aligned_cols=68 Identities=13% Similarity=0.145 Sum_probs=45.9
Q ss_pred HHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhccCCCC---------CCC
Q 030509 69 LISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH---------PVE 139 (176)
Q Consensus 69 li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~~---------~~~ 139 (176)
+.++|+++-+|+.-|-- +..++... | +.|+.. ++|.+.+-..-|++ +++.|.+.|+. -.-
T Consensus 59 ~~~~~~pDfvI~isPN~-a~PGP~~A--R---E~l~~~----~iP~IvI~D~p~~K-~kd~l~~~g~GYIivk~DpMIGA 127 (283)
T 1qv9_A 59 IAEDFEPDFIVYGGPNP-AAPGPSKA--R---EMLADS----EYPAVIIGDAPGLK-VKDEMEEQGLGYILVKPDAMLGA 127 (283)
T ss_dssp HHHHHCCSEEEEECSCT-TSHHHHHH--H---HHHHTS----SSCEEEEEEGGGGG-GHHHHHHTTCEEEEETTSCCCCC
T ss_pred hhhhcCCCEEEEECCCC-CCCCchHH--H---HHHHhC----CCCEEEEcCCcchh-hHHHHHhcCCcEEEEecCccccc
Confidence 33899999999996643 44555322 2 335542 89988888888887 78888877762 134
Q ss_pred CCCCCcHH
Q 030509 140 YKTILDKF 147 (176)
Q Consensus 140 ~k~~iD~~ 147 (176)
|++-+|..
T Consensus 128 rREFLDP~ 135 (283)
T 1qv9_A 128 RREFLDPV 135 (283)
T ss_dssp CTTTCCHH
T ss_pred hhhccCHH
Confidence 56777754
No 126
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=37.07 E-value=83 Score=20.25 Aligned_cols=59 Identities=8% Similarity=-0.057 Sum_probs=36.5
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhc
Q 030509 64 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLN 131 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~ 131 (176)
.+..+.+.+..++.+++.+-+. +..+ .++++.|.+. .+.+||+++-..-+...+.+.+.
T Consensus 37 ~~a~~~~~~~~~dlil~D~~l~-~~~g------~~~~~~l~~~--~~~~~ii~~s~~~~~~~~~~~~~ 95 (120)
T 1tmy_A 37 REAVEKYKELKPDIVTMDITMP-EMNG------IDAIKEIMKI--DPNAKIIVCSAMGQQAMVIEAIK 95 (120)
T ss_dssp HHHHHHHHHHCCSEEEEECSCG-GGCH------HHHHHHHHHH--CTTCCEEEEECTTCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEeCCCC-CCcH------HHHHHHHHhh--CCCCeEEEEeCCCCHHHHHHHHH
Confidence 3444556677899999986554 1112 2456666653 35789988876666655555543
No 127
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=37.06 E-value=83 Score=21.51 Aligned_cols=62 Identities=6% Similarity=-0.157 Sum_probs=39.0
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhccCCC
Q 030509 64 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDL 135 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~ 135 (176)
++..+.+.+..++.+|+.+-+. +..+ ..+++.|.+. .+.+||+++-...+...+.+.+. .|.
T Consensus 37 ~~a~~~l~~~~~dliild~~l~-~~~g------~~~~~~l~~~--~~~~pii~ls~~~~~~~~~~~~~-~g~ 98 (155)
T 1qkk_A 37 TEALAGLSADFAGIVISDIRMP-GMDG------LALFRKILAL--DPDLPMILVTGHGDIPMAVQAIQ-DGA 98 (155)
T ss_dssp HHHHHTCCTTCCSEEEEESCCS-SSCH------HHHHHHHHHH--CTTSCEEEEECGGGHHHHHHHHH-TTC
T ss_pred HHHHHHHHhCCCCEEEEeCCCC-CCCH------HHHHHHHHhh--CCCCCEEEEECCCChHHHHHHHh-cCC
Confidence 4455666778899999997554 2222 2456666653 45889988876666555555544 343
No 128
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=36.72 E-value=1.1e+02 Score=22.01 Aligned_cols=55 Identities=5% Similarity=0.043 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHhcCCCEEEEeccCCCC--CCchHHHHHHHHHHHHHhccCCCCCcEEEe
Q 030509 61 LMAEDFRSLISEFNLEGFIVGYPFNRQ--QNAADAVQVKLFIDDLSATKKLEDMKYAYW 117 (176)
Q Consensus 61 ~~~~~L~~li~e~~~~~iVVGlPl~dG--~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~ 117 (176)
.+.+.+.+.+...+++.|||-+=.||- +..+..+..+++.+.+++. .|+.+|+++
T Consensus 61 ~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~l~~ii~~l~~~--~p~~~ii~~ 117 (200)
T 4h08_A 61 ALIEELAVVLKNTKFDVIHFNNGLHGFDYTEEEYDKSFPKLIKIIRKY--APKAKLIWA 117 (200)
T ss_dssp HHHHHHHHHHHHSCCSEEEECCCSSCTTSCHHHHHHHHHHHHHHHHHH--CTTCEEEEE
T ss_pred HHHHHHHHHHhcCCCCeEEEEeeeCCCCCCHHHHHHHHHHHHHHHhhh--CCCccEEEe
Confidence 346788888889999999996555632 2233345567777888764 356666654
No 129
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=36.71 E-value=69 Score=26.40 Aligned_cols=43 Identities=12% Similarity=0.229 Sum_probs=35.4
Q ss_pred chHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhccCCCC
Q 030509 90 AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH 136 (176)
Q Consensus 90 s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~~ 136 (176)
.+..+.+.++.+.+++. +++++|+++.++++.|+.+-++.|.+
T Consensus 222 ePs~~~l~~l~~~ik~~----~v~~If~e~~~~~k~~~~ia~e~g~~ 264 (307)
T 3ujp_A 222 QFTPKQVQTVIEEVKTN----NVPTIFCESTVSDKGQKQVAQATGAR 264 (307)
T ss_dssp CCCHHHHHHHHHHHHTT----TCSEEEEETTSCSHHHHHTTTTTCCE
T ss_pred CCCHHHHHHHHHHHHhc----CCcEEEEeCCCChHHHHHHHHHhCCc
Confidence 35567888899989873 89999999999999998887777754
No 130
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=36.43 E-value=90 Score=20.49 Aligned_cols=61 Identities=10% Similarity=0.065 Sum_probs=39.6
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhc
Q 030509 64 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLN 131 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~ 131 (176)
++..+.+.++.++.+++.+-+. |..+ -++.+.|.+....+++||+++-...+...+.+.+.
T Consensus 36 ~~al~~l~~~~~dlvllD~~~p-~~~g------~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~ 96 (122)
T 3gl9_A 36 QIALEKLSEFTPDLIVLXIMMP-VMDG------FTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALS 96 (122)
T ss_dssp HHHHHHHTTBCCSEEEECSCCS-SSCH------HHHHHHHHTSTTTTTSCEEEEESCCSHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEeccCC-CCcH------HHHHHHHHhcccccCCCEEEEecCCchHHHHHHHh
Confidence 4455667788999999986443 3223 25667776532245789998877766666655543
No 131
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14
Probab=36.16 E-value=1e+02 Score=25.26 Aligned_cols=51 Identities=12% Similarity=0.242 Sum_probs=30.3
Q ss_pred CCeEEEEecCCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHHHHHhcCCCEEEE
Q 030509 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV 80 (176)
Q Consensus 21 ~~~iLglD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~e~~~~~iVV 80 (176)
.+..+|||+|...+=+++-+....... ..++.. +++..+.+...++..+++
T Consensus 19 ~~~~iGIDiGsTt~K~V~~~~~~i~~~---~~~~~~------~~~~l~~l~~~~~~~i~~ 69 (287)
T 2ews_A 19 SHMKVGIDAGGTLIKIVQEQDNQRTFK---TELTKN------IDQVVEWLNQQQIEKLCL 69 (287)
T ss_dssp --CEEEEEECSSEEEEEEECSSCEEEE---EEEGGG------HHHHHHHHHTSCCSEEEE
T ss_pred CCeEEEEEEChhhEEEEEEcCCEEEEE---EechHH------HHHHHHHhcccCceEEEE
Confidence 367899999999999999865433322 333332 344444455555665554
No 132
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=36.05 E-value=95 Score=20.62 Aligned_cols=59 Identities=14% Similarity=0.037 Sum_probs=38.2
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhc
Q 030509 64 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLN 131 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~ 131 (176)
.+..+.+.+..++.+++.+-+. +..+ .++.+.|++. .+.+||+++-..-+...+.+.+.
T Consensus 39 ~~al~~~~~~~~dlvilD~~lp-~~~g------~~~~~~l~~~--~~~~~ii~ls~~~~~~~~~~~~~ 97 (133)
T 3b2n_A 39 LDAMKLIEEYNPNVVILDIEMP-GMTG------LEVLAEIRKK--HLNIKVIIVTTFKRPGYFEKAVV 97 (133)
T ss_dssp HHHHHHHHHHCCSEEEECSSCS-SSCH------HHHHHHHHHT--TCSCEEEEEESCCCHHHHHHHHH
T ss_pred HHHHHHHhhcCCCEEEEecCCC-CCCH------HHHHHHHHHH--CCCCcEEEEecCCCHHHHHHHHH
Confidence 4445566778899999986544 2222 2456667653 45899998877666666665554
No 133
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=35.83 E-value=1.4e+02 Score=22.83 Aligned_cols=18 Identities=17% Similarity=0.340 Sum_probs=14.8
Q ss_pred HHHHHHHHhcCCCEEEEe
Q 030509 64 EDFRSLISEFNLEGFIVG 81 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVG 81 (176)
..+.+++.+.++++||+-
T Consensus 56 ~~~~~~l~~~~vdgiIi~ 73 (288)
T 3gv0_A 56 VPIRYILETGSADGVIIS 73 (288)
T ss_dssp HHHHHHHHHTCCSEEEEE
T ss_pred HHHHHHHHcCCccEEEEe
Confidence 567777778899999986
No 134
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=35.79 E-value=1.2e+02 Score=25.20 Aligned_cols=61 Identities=8% Similarity=0.053 Sum_probs=40.9
Q ss_pred HHHHHHhcCCCEEEEeccCC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEEe---cCcccHHHHHHHhccCCC
Q 030509 66 FRSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYW---NEGFTSKGVELLLNPLDL 135 (176)
Q Consensus 66 L~~li~e~~~~~iVVGlPl~-dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~---DEr~TT~~A~~~l~~~g~ 135 (176)
-.+.+.+..+++||+|. |+ ||+... ..++++.+... +++++|. |+-.+..+|.+.+.+.|+
T Consensus 116 dI~~~~~~GAdGvVfG~-L~~dg~iD~--~~~~~Li~~a~------~l~vTFHRAFD~~~d~~~Ale~Li~lGv 180 (287)
T 3iwp_A 116 DIRLAKLYGADGLVFGA-LTEDGHIDK--ELCMSLMAICR------PLPVTFHRAFDMVHDPMAALETLLTLGF 180 (287)
T ss_dssp HHHHHHHTTCSEEEECC-BCTTSCBCH--HHHHHHHHHHT------TSCEEECGGGGGCSCHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCEEEEee-eCCCCCcCH--HHHHHHHHHcC------CCcEEEECchhccCCHHHHHHHHHHcCC
Confidence 34456677999999994 56 887764 22333333221 5788875 787788899888887565
No 135
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=35.57 E-value=1.3e+02 Score=23.94 Aligned_cols=47 Identities=11% Similarity=0.054 Sum_probs=30.3
Q ss_pred HHHHHHHHHh-cCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCccc
Q 030509 63 AEDFRSLISE-FNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFT 122 (176)
Q Consensus 63 ~~~L~~li~e-~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~T 122 (176)
.+.+..++.. .++++||+- | . ... ...+.+++.+. ++||+++|-...
T Consensus 50 ~~~i~~~i~~~~~vDgiIi~-~-~---~~~----~~~~~~~~~~~----giPvV~~~~~~~ 97 (350)
T 3h75_A 50 LQQARELFQGRDKPDYLMLV-N-E---QYV----APQILRLSQGS----GIKLFIVNSPLT 97 (350)
T ss_dssp HHHHHHHHHSSSCCSEEEEE-C-C---SSH----HHHHHHHHTTS----CCEEEEEESCCC
T ss_pred HHHHHHHHhcCCCCCEEEEe-C-c---hhh----HHHHHHHHHhC----CCcEEEEcCCCC
Confidence 4677888887 899999995 3 1 111 12344556542 789998886544
No 136
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=34.33 E-value=1.1e+02 Score=24.88 Aligned_cols=54 Identities=15% Similarity=0.169 Sum_probs=38.4
Q ss_pred HHHHHHHHHhcCCCEEEEeccCC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCccc
Q 030509 63 AEDFRSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFT 122 (176)
Q Consensus 63 ~~~L~~li~e~~~~~iVVGlPl~-dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~T 122 (176)
.+.|.+.++..++..|++-.|-| .|..-+.. .++++++..++. ++ .+.+||-++
T Consensus 171 ~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~-~l~~i~~~a~~~----~~-~li~De~~~ 225 (437)
T 3g0t_A 171 REKLESYLQTGQFCSIIYSNPNNPTWQCMTDE-ELRIIGELATKH----DV-IVIEDLAYF 225 (437)
T ss_dssp HHHHHHHHTTTCCCEEEEESSCTTTCCCCCHH-HHHHHHHHHHHT----TC-EEEEECTTT
T ss_pred HHHHHHHHhcCCceEEEEeCCCCCCCCcCCHH-HHHHHHHHHHHC----Cc-EEEEEcchh
Confidence 68888888777899999999988 88765433 355666656552 43 566788775
No 137
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=33.71 E-value=68 Score=24.41 Aligned_cols=49 Identities=22% Similarity=0.287 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEe
Q 030509 63 AEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYW 117 (176)
Q Consensus 63 ~~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~ 117 (176)
++++.+.+. ..|+||+|-|..+++.+.+.+ .|.+++... .+.+-|+.++
T Consensus 76 ~~~~~~~i~--~AD~ivi~sP~Y~~~~~~~lK---~~iD~~~~~-~l~gK~~~~v 124 (191)
T 3k1y_A 76 LEEITSALS--ASDGLVVATPVFKASYTGLFK---MFFDILDTD-ALTGMPTIIA 124 (191)
T ss_dssp HHHHHHHHH--HCSEEEEEEECBTTBSCHHHH---HHHHHSCTT-TTTTCEEEEE
T ss_pred HHHHHHHHH--HCCEEEEEcCccCCcCcHHHH---HHHHHhhhh-hcCCCEEEEE
Confidence 455555554 589999999999787777544 677766532 3446666544
No 138
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=33.41 E-value=1.1e+02 Score=20.62 Aligned_cols=50 Identities=4% Similarity=0.017 Sum_probs=31.4
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCccc
Q 030509 64 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFT 122 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~T 122 (176)
.+..+.+.+..++.+++.+-+. +..+ .++++.|.+. .+.+||+++-..-+
T Consensus 39 ~~al~~~~~~~~dlvllD~~lp-~~~g------~~l~~~l~~~--~~~~~ii~ls~~~~ 88 (141)
T 3cu5_A 39 INAIQIALKHPPNVLLTDVRMP-RMDG------IELVDNILKL--YPDCSVIFMSGYSD 88 (141)
T ss_dssp HHHHHHHTTSCCSEEEEESCCS-SSCH------HHHHHHHHHH--CTTCEEEEECCSTT
T ss_pred HHHHHHHhcCCCCEEEEeCCCC-CCCH------HHHHHHHHhh--CCCCcEEEEeCCCc
Confidence 4445566778899999997654 2222 2456666653 45789988754433
No 139
>2xws_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; 1.60A {Archaeoglobus fulgidus} PDB: 2dj5_A* 2xwq_A
Probab=32.22 E-value=1e+02 Score=21.21 Aligned_cols=48 Identities=10% Similarity=-0.035 Sum_probs=27.5
Q ss_pred EEEEeccCCCCCCchHH-HHHHHHHHHHHhccCCCCCcE--EEec--CcccHHHHHHHh
Q 030509 77 GFIVGYPFNRQQNAADA-VQVKLFIDDLSATKKLEDMKY--AYWN--EGFTSKGVELLL 130 (176)
Q Consensus 77 ~iVVGlPl~dG~~s~~~-~~v~~Fa~~L~~~~~~~~lpV--~~~D--Er~TT~~A~~~l 130 (176)
.++|| .||..+.+ ..+..+++.|++. ++..+| -|++ ..-|-.+|-+.|
T Consensus 6 lllv~----HGS~~~~~~~~~~~la~~l~~~--~~~~~V~~a~le~~~~Psl~~~l~~l 58 (133)
T 2xws_A 6 LVIVG----HGSQLNHYREVMELHRKRIEES--GAFDEVKIAFAARKRRPMPDEAIREM 58 (133)
T ss_dssp EEEEE----CSCCCHHHHHHHHHHHHHHHHH--TSSSEEEEEESSTTCSSCHHHHHHHC
T ss_pred EEEEE----CCCCCHHHHHHHHHHHHHHHhh--CCCCcEEeeeeecCCCCCHHHHHHHc
Confidence 46777 77776433 3567777777763 323343 3555 445555555554
No 140
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=31.91 E-value=38 Score=23.15 Aligned_cols=21 Identities=10% Similarity=0.146 Sum_probs=19.2
Q ss_pred HHHHHHHHHhcCCCEEEEecc
Q 030509 63 AEDFRSLISEFNLEGFIVGYP 83 (176)
Q Consensus 63 ~~~L~~li~e~~~~~iVVGlP 83 (176)
.+.|.+.+++++++.||+|-.
T Consensus 95 ~~~I~~~a~~~~~dliV~G~~ 115 (143)
T 3fdx_A 95 KDKILALAKSLPADLVIIASH 115 (143)
T ss_dssp HHHHHHHHHHTTCSEEEEESS
T ss_pred HHHHHHHHHHhCCCEEEEeCC
Confidence 588999999999999999965
No 141
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=31.78 E-value=1.7e+02 Score=22.20 Aligned_cols=44 Identities=9% Similarity=0.129 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCc
Q 030509 63 AEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEG 120 (176)
Q Consensus 63 ~~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr 120 (176)
...+.+.+.+.++++||+- |.. .+. .+.+.+.+. ++|++++|..
T Consensus 58 ~~~~~~~~~~~~vdgiIi~-~~~---~~~------~~~~~l~~~----~iPvV~~~~~ 101 (292)
T 3k4h_A 58 FNGVVKMVQGRQIGGIILL-YSR---END------RIIQYLHEQ----NFPFVLIGKP 101 (292)
T ss_dssp HHHHHHHHHTTCCCEEEES-CCB---TTC------HHHHHHHHT----TCCEEEESCC
T ss_pred HHHHHHHHHcCCCCEEEEe-CCC---CCh------HHHHHHHHC----CCCEEEECCC
Confidence 3556666777899999984 322 111 233455542 6777777644
No 142
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=31.69 E-value=1.3e+02 Score=23.02 Aligned_cols=17 Identities=12% Similarity=0.409 Sum_probs=12.2
Q ss_pred HHHHHHHHhcCCCEEEEe
Q 030509 64 EDFRSLISEFNLEGFIVG 81 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVG 81 (176)
+.+..++ +.++++||+-
T Consensus 48 ~~i~~l~-~~~vdgiIi~ 64 (283)
T 2ioy_A 48 SNVEDLI-QQKVDVLLIN 64 (283)
T ss_dssp HHHHHHH-HTTCSEEEEC
T ss_pred HHHHHHH-HcCCCEEEEe
Confidence 4455555 6789999984
No 143
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=31.49 E-value=71 Score=25.99 Aligned_cols=43 Identities=9% Similarity=0.139 Sum_probs=32.4
Q ss_pred chHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhccCCCC
Q 030509 90 AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH 136 (176)
Q Consensus 90 s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~~ 136 (176)
.+..+.+.++.+.+++. +++++|++..+++..|+.+-++.|.+
T Consensus 215 eps~~~l~~l~~~ik~~----~v~~if~e~~~~~~~~~~ia~~~g~~ 257 (294)
T 3hh8_A 215 EGTPDQISSLIEKLKVI----KPSALFVESSVDRRPMETVSKDSGIP 257 (294)
T ss_dssp CCCHHHHHHHHHHHHHS----CCSCEEEETTSCSHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHHHHHHc----CCCEEEEeCCCCcHHHHHHHHHhCCc
Confidence 35567788888888873 78899998888888887776655543
No 144
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=31.16 E-value=1.4e+02 Score=23.55 Aligned_cols=51 Identities=8% Similarity=0.133 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcCCCEEEEeccCC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCccc
Q 030509 63 AEDFRSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFT 122 (176)
Q Consensus 63 ~~~L~~li~e~~~~~iVVGlPl~-dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~T 122 (176)
.+.|.+.++++++..+++=.|-| .|...+. +++.++ .++. ++ .+.+||.++
T Consensus 160 ~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l-~~i~~l---~~~~----~~-~li~Dea~~ 211 (397)
T 3f9t_A 160 EKFVKDAVEDYDVDGIIGIAGTTELGTIDNI-EELSKI---AKEN----NI-YIHVDAAFG 211 (397)
T ss_dssp HHHHHHHHHHSCCCEEEEEBSCTTTCCBCCH-HHHHHH---HHHH----TC-EEEEECTTG
T ss_pred HHHHHHHHhhcCCeEEEEECCCCCCCCCCCH-HHHHHH---HHHh----CC-eEEEEcccc
Confidence 57888888887888999999999 8987652 333333 3332 33 567899876
No 145
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=31.09 E-value=40 Score=23.02 Aligned_cols=22 Identities=14% Similarity=0.015 Sum_probs=19.5
Q ss_pred HHHHHHHHHhcCCCEEEEeccC
Q 030509 63 AEDFRSLISEFNLEGFIVGYPF 84 (176)
Q Consensus 63 ~~~L~~li~e~~~~~iVVGlPl 84 (176)
.+.|.+.+++++++.||+|-.-
T Consensus 88 ~~~I~~~a~~~~~dliV~G~~~ 109 (137)
T 2z08_A 88 AEAILQAARAEKADLIVMGTRG 109 (137)
T ss_dssp HHHHHHHHHHTTCSEEEEESSC
T ss_pred HHHHHHHHHHcCCCEEEECCCC
Confidence 5889999999999999999653
No 146
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=30.93 E-value=40 Score=21.97 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=13.3
Q ss_pred EEEEecCCCeEEEEEe
Q 030509 24 FLGLDVGDKYVGLSIS 39 (176)
Q Consensus 24 iLglD~G~kriGvAvs 39 (176)
..-+|++..|||+|-.
T Consensus 71 y~vfD~~~~riGfA~~ 86 (87)
T 1b5f_B 71 HTVFDYGNLLVGFAEA 86 (87)
T ss_dssp EEEEETTTTEEEEEEE
T ss_pred EEEEECCCCEEEEEEc
Confidence 4569999999999953
No 147
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=30.93 E-value=95 Score=25.01 Aligned_cols=37 Identities=5% Similarity=0.039 Sum_probs=29.9
Q ss_pred chHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHh
Q 030509 90 AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLL 130 (176)
Q Consensus 90 s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l 130 (176)
.+..+.+.++.+.+++. +++++|+++..++..++.+.
T Consensus 195 eps~~~l~~l~~~ik~~----~v~~if~e~~~~~~~~~~l~ 231 (282)
T 3mfq_A 195 EVANSDMIETVNLIIDH----NIKAIFTESTTNPERMKKLQ 231 (282)
T ss_dssp CCCHHHHHHHHHHHHHH----TCCEEECBTTSCTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHc----CCCEEEEeCCCChHHHHHHH
Confidence 45678888888888874 78999999999888887653
No 148
>1f07_A Coenzyme F420-dependent N5,N10- methylenetetrahydromethanopterin reductase; (beta, alpha)8 barrel; HET: MPO; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.1.16.3
Probab=30.81 E-value=82 Score=25.34 Aligned_cols=40 Identities=18% Similarity=0.323 Sum_probs=24.4
Q ss_pred ChhhHHHHHHHHHHhcCCCEEEEeccCC-CCCCchHHHHHHHHHHHH
Q 030509 58 TIDLMAEDFRSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLFIDDL 103 (176)
Q Consensus 58 ~~~~~~~~L~~li~e~~~~~iVVGlPl~-dG~~s~~~~~v~~Fa~~L 103 (176)
+++.+.++|.++.+ ..++.|+++.|.. + ..+.++.|++.+
T Consensus 278 tp~~v~~~l~~~~~-~G~d~~~l~~~~~~~-----~~~~l~~~a~~V 318 (321)
T 1f07_A 278 TPDEFIPKIEALGE-MGVTQYVAGSPIGPD-----KEKSIKLLGEVI 318 (321)
T ss_dssp CHHHHHHHHHHHHH-TTCCEEEEEEEECSS-----HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-cCCCEEEEcCCCCcc-----HHHHHHHHHHhh
Confidence 34556677777766 6788888765544 2 344555566544
No 149
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=30.59 E-value=95 Score=23.98 Aligned_cols=18 Identities=17% Similarity=0.386 Sum_probs=14.2
Q ss_pred HHHHHHHHhcCCCEEEEe
Q 030509 64 EDFRSLISEFNLEGFIVG 81 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVG 81 (176)
..+.+.+...++++||+-
T Consensus 55 ~~~~~~l~~~~vdGiIi~ 72 (294)
T 3qk7_A 55 QSLIHLVETRRVDALIVA 72 (294)
T ss_dssp HHHHHHHHHTCCSEEEEC
T ss_pred HHHHHHHHcCCCCEEEEe
Confidence 566777777889999986
No 150
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=30.48 E-value=93 Score=23.45 Aligned_cols=51 Identities=18% Similarity=0.096 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhc--cCCCCCcEEEec
Q 030509 63 AEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSAT--KKLEDMKYAYWN 118 (176)
Q Consensus 63 ~~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~--~~~~~lpV~~~D 118 (176)
+.++.+.+. +.|+||+|-|..+++.+...+ .|.+++... ..+.+-|+.++-
T Consensus 63 ~~~l~~~i~--~AD~iv~~sP~y~~~~~~~lK---~~iD~~~~~~~~~~~gK~~~~~~ 115 (193)
T 3svl_A 63 VEALAEQIR--QADGVVIVTPEYNYSVPGGLK---NAIDWLSRLPDQPLAGKPVLIQT 115 (193)
T ss_dssp HHHHHHHHH--HSSEEEEEECCBTTBCCHHHH---HHHHHHHTSTTCTTTTCEEEEEE
T ss_pred HHHHHHHHH--HCCEEEEEecccCCCCCHHHH---HHHHHHhhcCccccCCCeEEEEE
Confidence 455555554 589999999999888777655 455555431 124466766653
No 151
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=30.12 E-value=93 Score=25.55 Aligned_cols=54 Identities=11% Similarity=0.042 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCCCEEEEeccCC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCccc
Q 030509 63 AEDFRSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFT 122 (176)
Q Consensus 63 ~~~L~~li~e~~~~~iVVGlPl~-dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~T 122 (176)
++.|.+.+++.++..|++--|-| .|..-+. ...++.++..++. ++ .+.+||-++
T Consensus 183 ~~~le~~i~~~~~~~vil~~p~nptG~~~~~-~~l~~l~~l~~~~----~~-~li~De~~~ 237 (421)
T 3l8a_A 183 FEQLEKDIIDNNVKIYLLCSPHNPGGRVWDN-DDLIKIAELCKKH----GV-ILVSDEIHQ 237 (421)
T ss_dssp HHHHHHHHHHTTEEEEEEESSBTTTTBCCCH-HHHHHHHHHHHHH----TC-EEEEECTTT
T ss_pred HHHHHHHhhccCCeEEEECCCCCCCCCcCCH-HHHHHHHHHHHHc----CC-EEEEEcccc
Confidence 58888888877899999988888 7755222 2345555555542 43 455788754
No 152
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=29.77 E-value=1.2e+02 Score=19.76 Aligned_cols=61 Identities=7% Similarity=0.010 Sum_probs=38.4
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhc
Q 030509 64 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLN 131 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~ 131 (176)
++..+.+.+..++.+++.+-+. +..+ .++++.|.+....+.+||+++-..-+...+.+.+.
T Consensus 41 ~~a~~~~~~~~~dlvl~D~~l~-~~~g------~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~ 101 (129)
T 1p6q_A 41 EQGMKIMAQNPHHLVISDFNMP-KMDG------LGLLQAVRANPATKKAAFIILTAQGDRALVQKAAA 101 (129)
T ss_dssp HHHHHHHHTSCCSEEEECSSSC-SSCH------HHHHHHHTTCTTSTTCEEEECCSCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEEeCCCC-CCCH------HHHHHHHhcCccccCCCEEEEeCCCCHHHHHHHHH
Confidence 4445666778899999986554 2222 24666776531235789998876666665555554
No 153
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=29.74 E-value=1.2e+02 Score=24.49 Aligned_cols=51 Identities=12% Similarity=0.135 Sum_probs=34.7
Q ss_pred HHHHHHHHHhc---CCCEEEEeccCC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCccc
Q 030509 63 AEDFRSLISEF---NLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFT 122 (176)
Q Consensus 63 ~~~L~~li~e~---~~~~iVVGlPl~-dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~T 122 (176)
.+.|.+.+++. ++..|++.-|.| .|..-+ .+++.++++ +. ++ .+.+||-++
T Consensus 159 ~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~-~~~l~~~~~---~~----~~-~li~De~~~ 213 (398)
T 3a2b_A 159 MEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVN-LPELTSIAN---EF----DA-AVMVDDAHS 213 (398)
T ss_dssp HHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCC-HHHHHHHHH---HH----TC-EEEEECTTT
T ss_pred HHHHHHHHHhhccCCceEEEEeCCCCCCCCccC-HHHHHHHHH---Hc----Cc-EEEEECCCc
Confidence 47788888775 688999999988 888765 344444443 32 43 566788775
No 154
>3n2q_A Sex pheromone staph-CAM373; structural genomics, MCSG, PSI-2, protein structure initiati midwest center for structural genomics; 2.55A {Bacillus cereus}
Probab=29.58 E-value=39 Score=28.15 Aligned_cols=42 Identities=14% Similarity=0.250 Sum_probs=27.5
Q ss_pred CCCEEEEeccCC-CCCCchHHHHHHHHHHHH----HhccCCCCCcEE
Q 030509 74 NLEGFIVGYPFN-RQQNAADAVQVKLFIDDL----SATKKLEDMKYA 115 (176)
Q Consensus 74 ~~~~iVVGlPl~-dG~~s~~~~~v~~Fa~~L----~~~~~~~~lpV~ 115 (176)
+..+|+|||-+| --+..++-...++.|.++ ++...+.++||+
T Consensus 87 ~L~GisIGLamNsv~s~~~~~~~Gk~~A~~iv~rlR~~~~l~~vPI~ 133 (287)
T 3n2q_A 87 SLSGVMIGLAMSSSVSNEEAMSKGTEVAKQLIEAINKNDKYNKSPIT 133 (287)
T ss_dssp EEEEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCEE
T ss_pred EEccEEEEEEecCcCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEE
Confidence 466999999999 446666655555555544 432235688975
No 155
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=29.50 E-value=52 Score=22.78 Aligned_cols=10 Identities=10% Similarity=0.375 Sum_probs=4.7
Q ss_pred HHHHHHHHHh
Q 030509 96 VKLFIDDLSA 105 (176)
Q Consensus 96 v~~Fa~~L~~ 105 (176)
.+.+.+.|++
T Consensus 96 ~~~l~~~l~~ 105 (138)
T 5nul_A 96 MRDFEERMNG 105 (138)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3445555544
No 156
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=29.28 E-value=1.5e+02 Score=21.01 Aligned_cols=53 Identities=11% Similarity=0.108 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhcCCCEEEEeccCCCC----CCchHHHHHHHHHHHHHhccCCCCCcEEEec
Q 030509 62 MAEDFRSLISEFNLEGFIVGYPFNRQ----QNAADAVQVKLFIDDLSATKKLEDMKYAYWN 118 (176)
Q Consensus 62 ~~~~L~~li~e~~~~~iVVGlPl~dG----~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~D 118 (176)
....+.+.+...+++.|||-+=.||- +........+++.+.+++. +.+|+++.
T Consensus 50 ~~~~~~~~~~~~~pd~Vii~~G~ND~~~~~~~~~~~~~l~~li~~~~~~----~~~vil~~ 106 (190)
T 1ivn_A 50 GLARLPALLKQHQPRWVLVELGGNDGLRGFQPQQTEQTLRQILQDVKAA----NAEPLLMQ 106 (190)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCTTTTSSSCCHHHHHHHHHHHHHHHHHT----TCEEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEEEeeccccccCCCHHHHHHHHHHHHHHHHHc----CCCEEEEe
Confidence 35667777777778888887666622 2233455566777777653 44566553
No 157
>1o13_A Probable NIFB protein; ribonuclease H-like motif fold, structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.83A {Thermotoga maritima} SCOP: c.55.5.1 PDB: 1t3v_A
Probab=29.23 E-value=1.1e+02 Score=21.94 Aligned_cols=54 Identities=19% Similarity=-0.001 Sum_probs=36.9
Q ss_pred HHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhccCCC
Q 030509 65 DFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDL 135 (176)
Q Consensus 65 ~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~ 135 (176)
.+.+++.+..++.||+| ..++. ..+.|.+. ++.|+...+ .|-.+|-+.|.+..+
T Consensus 67 ~~a~~L~~~gv~vVI~g------~IG~~------a~~~L~~~----GI~v~~~~~-g~i~eal~~~~~G~L 120 (136)
T 1o13_A 67 AVPNFVKEKGAELVIVR------GIGRR------AIAAFEAM----GVKVIKGAS-GTVEEVVNQYLSGQL 120 (136)
T ss_dssp CHHHHHHHTTCSEEECS------CCCHH------HHHHHHHT----TCEEECSCC-SBHHHHHHHHHTTC-
T ss_pred HHHHHHHHCCCCEEEEC------CCCHH------HHHHHHHC----CCEEEecCC-CCHHHHHHHHHhCCC
Confidence 45677778999999999 45653 34567763 788887655 577777777654433
No 158
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=29.03 E-value=1.4e+02 Score=23.68 Aligned_cols=56 Identities=9% Similarity=0.133 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCCCEEEEeccCC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCccc
Q 030509 63 AEDFRSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFT 122 (176)
Q Consensus 63 ~~~L~~li~e~~~~~iVVGlPl~-dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~T 122 (176)
.+.|.+.++++++..|++-.|-| .|..-+. ..++++++..++. .+++ .+.+||-++
T Consensus 146 ~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~-~~l~~i~~~~~~~--~~~~-~li~De~~~ 202 (367)
T 3euc_A 146 RGAMLAAMAEHQPAIVYLAYPNNPTGNLFDA-ADMEAIVRAAQGS--VCRS-LVVVDEAYQ 202 (367)
T ss_dssp HHHHHHHHHHHCCSEEEEESSCTTTCCCCCH-HHHHHHHHHTBTT--SCBC-EEEEECTTC
T ss_pred HHHHHHHhhccCCCEEEEcCCCCCCCCCCCH-HHHHHHHHhhhhc--CCCc-EEEEeCcch
Confidence 58888989888899999988888 8876543 2345555544431 0033 456799876
No 159
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=29.02 E-value=1e+02 Score=24.49 Aligned_cols=54 Identities=11% Similarity=0.052 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcCCCEEEEeccCC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCccc
Q 030509 63 AEDFRSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFT 122 (176)
Q Consensus 63 ~~~L~~li~e~~~~~iVVGlPl~-dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~T 122 (176)
.+.|.+.+++.++..|++--|-| .|..-+. ..+++.++..++. ++ .+.+||-++
T Consensus 149 ~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~-~~l~~i~~~~~~~----~~-~li~De~~~ 203 (391)
T 3dzz_A 149 WADLEEKLATPSVRMMVFCNPHNPIGYAWSE-EEVKRIAELCAKH----QV-LLISDEIHG 203 (391)
T ss_dssp HHHHHHHHTSTTEEEEEEESSBTTTTBCCCH-HHHHHHHHHHHHT----TC-EEEEECTTT
T ss_pred HHHHHHHHhccCceEEEEECCCCCCCcccCH-HHHHHHHHHHHHC----CC-EEEEecccc
Confidence 58888888877899999998988 7876322 2345555555542 44 455788765
No 160
>2yx6_A Hypothetical protein PH0822; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=28.89 E-value=1.4e+02 Score=20.45 Aligned_cols=55 Identities=9% Similarity=-0.075 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhccCCC
Q 030509 64 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDL 135 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~ 135 (176)
..+.+++.+..++.+|+| ..++. ....|.+. ++.++... ..|-.+|-+.|.+..+
T Consensus 53 g~~~~~L~~~gv~~vi~~------~iG~~------a~~~L~~~----GI~v~~~~-~~~v~eal~~~~~g~L 107 (121)
T 2yx6_A 53 GDLPNFIKDHGAKIVLTY------GIGRR------AIEYFNSL----GISVVTGV-YGRISDVIKAFIGGKL 107 (121)
T ss_dssp CHHHHHHHHTTCCEEECS------BCCHH------HHHHHHHT----TCEEECSB-CSBHHHHHHHHHTTCC
T ss_pred CHHHHHHHHcCCCEEEEC------CCCHh------HHHHHHHC----CCEEEECC-CCCHHHHHHHHHcCCC
Confidence 356777788999999999 45553 33467663 78888764 4677788777665444
No 161
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=28.77 E-value=1.9e+02 Score=21.78 Aligned_cols=59 Identities=10% Similarity=-0.041 Sum_probs=39.5
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhc
Q 030509 64 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLN 131 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~ 131 (176)
++..+.+.+..++.+++.+-+. +..+ .++++.|.+. .+++||+++-..-+...+.+.+.
T Consensus 57 ~~al~~~~~~~~dlvllD~~lp-~~~g------~~~~~~lr~~--~~~~~ii~lt~~~~~~~~~~~~~ 115 (250)
T 3r0j_A 57 AQALDRARETRPDAVILDVXMP-GMDG------FGVLRRLRAD--GIDAPALFLTARDSLQDKIAGLT 115 (250)
T ss_dssp HHHHHHHHHHCCSEEEEESCCS-SSCH------HHHHHHHHHT--TCCCCEEEEECSTTHHHHHHHHT
T ss_pred HHHHHHHHhCCCCEEEEeCCCC-CCCH------HHHHHHHHhc--CCCCCEEEEECCCCHHHHHHHHH
Confidence 4555667778999999997554 2222 2566677663 35789998887776666666554
No 162
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=28.76 E-value=1.9e+02 Score=21.85 Aligned_cols=43 Identities=12% Similarity=0.199 Sum_probs=25.7
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcc
Q 030509 64 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGF 121 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~ 121 (176)
..+.+.+...++++||+- .... ..+.+.+.+. ++|++++|...
T Consensus 53 ~~~~~~l~~~~vdgiIi~----~~~~-------~~~~~~l~~~----~iPvV~i~~~~ 95 (276)
T 3jy6_A 53 KTLLRAIGSRGFDGLILQ----SFSN-------PQTVQEILHQ----QMPVVSVDREM 95 (276)
T ss_dssp HHHHHHHHTTTCSEEEEE----SSCC-------HHHHHHHHTT----SSCEEEESCCC
T ss_pred HHHHHHHHhCCCCEEEEe----cCCc-------HHHHHHHHHC----CCCEEEEeccc
Confidence 344555566789999987 2221 1344556542 67888777543
No 163
>1z69_A COG2141, coenzyme F420-dependent N(5),N(10)- methylenetetrahydromethanopterin reductase; (alpha, beta)8 barrel, oxidoreductase; HET: F42 1PG; 2.61A {Methanosarcina barkeri}
Probab=28.74 E-value=81 Score=25.37 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=24.0
Q ss_pred ChhhHHHHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHH
Q 030509 58 TIDLMAEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDD 102 (176)
Q Consensus 58 ~~~~~~~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~ 102 (176)
+++.+.++|.++.+ ..++.|+++.|... ...+.++.|++.
T Consensus 284 tp~~v~~~l~~~~~-~G~d~~~l~~~~~~----~~~~~l~~~a~~ 323 (327)
T 1z69_A 284 TPDDCMKRIKDLEA-IGVTQIVAGSPIGP----AKEKAIKLIGKE 323 (327)
T ss_dssp SHHHHHHHHHHHHH-TTCCEEEEEEEESS----SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-cCCCEEEEcCCCCc----cHHHHHHHHHHH
Confidence 34556677777765 67888888766541 133444556554
No 164
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=28.54 E-value=94 Score=20.90 Aligned_cols=59 Identities=7% Similarity=-0.047 Sum_probs=39.1
Q ss_pred HHHHHHHHh-cCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhc
Q 030509 64 EDFRSLISE-FNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLN 131 (176)
Q Consensus 64 ~~L~~li~e-~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~ 131 (176)
+.+..+.+. ..++.||+.+-+. +.. ...+++.|.+. .+.+||+++-..-+...+.+.+.
T Consensus 56 ~~~~~~~~~~~~~dlvi~D~~l~-~~~------g~~~~~~l~~~--~~~~~ii~lt~~~~~~~~~~~~~ 115 (146)
T 4dad_A 56 AQIVQRTDGLDAFDILMIDGAAL-DTA------ELAAIEKLSRL--HPGLTCLLVTTDASSQTLLDAMR 115 (146)
T ss_dssp HHHTTCHHHHTTCSEEEEECTTC-CHH------HHHHHHHHHHH--CTTCEEEEEESCCCHHHHHHHHT
T ss_pred HHHHHHHhcCCCCCEEEEeCCCC-Ccc------HHHHHHHHHHh--CCCCcEEEEeCCCCHHHHHHHHH
Confidence 455666666 8899999996544 111 13566667653 46899998887777776666654
No 165
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=28.50 E-value=82 Score=25.13 Aligned_cols=38 Identities=11% Similarity=0.094 Sum_probs=30.6
Q ss_pred HhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEe
Q 030509 71 SEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYW 117 (176)
Q Consensus 71 ~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~ 117 (176)
.+...|.|.|| |+.+-....+.+..+++++ .++|+++.
T Consensus 28 ~~~GtD~i~vG-----Gs~gvt~~~~~~~v~~ik~----~~~Pvvlf 65 (228)
T 3vzx_A 28 CESGTDAVIIG-----GSDGVTEDNVLRMMSKVRR----FLVPCVLE 65 (228)
T ss_dssp HTSSCSEEEEC-----CCSCCCHHHHHHHHHHHTT----SSSCEEEE
T ss_pred HHcCCCEEEEC-----CcCCCCHHHHHHHHHHhhc----cCCCEEEe
Confidence 57789999999 7776667788888888885 27898874
No 166
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=28.41 E-value=1.8e+02 Score=21.49 Aligned_cols=59 Identities=12% Similarity=0.054 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHHhcCCCEEEEeccCC-C-CCCchHHHHHHHHHHHHHhccCCCCCcEEEecCccc
Q 030509 60 DLMAEDFRSLISEFNLEGFIVGYPFN-R-QQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFT 122 (176)
Q Consensus 60 ~~~~~~L~~li~e~~~~~iVVGlPl~-d-G~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~T 122 (176)
+.+.+.+.+++++.+++.+|+=-|-. . +......+.+..+.+.+++ . +++|+++.+...
T Consensus 114 ~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~---~-~~~vi~~~h~~~ 174 (247)
T 2dr3_A 114 REFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAG---T-GCTSIFVSQVSV 174 (247)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHH---T-TCEEEEEEECC-
T ss_pred HHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHH---C-CCeEEEEecCCC
Confidence 34567888888889999999987766 4 3333444555556555554 2 788988876554
No 167
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=28.37 E-value=2e+02 Score=22.12 Aligned_cols=43 Identities=7% Similarity=0.121 Sum_probs=22.9
Q ss_pred HHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCc
Q 030509 66 FRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEG 120 (176)
Q Consensus 66 L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr 120 (176)
+.+.+...++++||+- |.+ .... ..+.+.+.+. ++||+++|..
T Consensus 50 ~i~~l~~~~vdgiIi~-~~~---~~~~----~~~~~~~~~~----~iPvV~~~~~ 92 (313)
T 3m9w_A 50 QIENMINRGVDVLVII-PYN---GQVL----SNVVKEAKQE----GIKVLAYDRM 92 (313)
T ss_dssp HHHHHHHTTCSEEEEE-CSS---TTSC----HHHHHHHHTT----TCEEEEESSC
T ss_pred HHHHHHHcCCCEEEEe-CCC---hhhh----HHHHHHHHHC----CCeEEEECCc
Confidence 3334445689999987 222 1111 1234455542 6777777643
No 168
>4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A*
Probab=28.32 E-value=47 Score=29.32 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=21.4
Q ss_pred CCCCeEEEEecCCCeEEEEEecCCCce
Q 030509 19 SKRGRFLGLDVGDKYVGLSISDPKNKI 45 (176)
Q Consensus 19 ~~~~~iLglD~G~kriGvAvsd~~~~~ 45 (176)
+++..+||||+||.-+=.++-|..+.+
T Consensus 7 ~~~~~~lgID~GTts~Ka~l~d~~G~v 33 (538)
T 4bc3_A 7 APRRCCLGWDFSTQQVKVVAVDAELNV 33 (538)
T ss_dssp --CCEEEEEEECSSEEEEEEEETTCCE
T ss_pred CCCCEEEEEEEcCcCEEEEEECCCCCE
Confidence 345689999999999999998887654
No 169
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=28.24 E-value=86 Score=20.94 Aligned_cols=65 Identities=8% Similarity=0.096 Sum_probs=40.3
Q ss_pred HHHHHHHHh-cCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhccCCC
Q 030509 64 EDFRSLISE-FNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDL 135 (176)
Q Consensus 64 ~~L~~li~e-~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~ 135 (176)
++..+.+.+ ..++.||+.+-+.++. ...++++.|++....+++||+++-...+...+.+.+. .|.
T Consensus 39 ~~a~~~l~~~~~~dlvi~D~~l~~~~------~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~-~g~ 104 (140)
T 3lua_A 39 KKFYSIFKDLDSITLIIMDIAFPVEK------EGLEVLSAIRNNSRTANTPVIIATKSDNPGYRHAALK-FKV 104 (140)
T ss_dssp HHHHTTTTTCCCCSEEEECSCSSSHH------HHHHHHHHHHHSGGGTTCCEEEEESCCCHHHHHHHHH-SCC
T ss_pred HHHHHHHhcCCCCcEEEEeCCCCCCC------cHHHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHH-cCC
Confidence 455666777 8899999985433011 1235666676511135899998887777666666554 443
No 170
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=28.06 E-value=1.3e+02 Score=23.72 Aligned_cols=53 Identities=8% Similarity=0.004 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCCCEEEEeccCC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCccc
Q 030509 63 AEDFRSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFT 122 (176)
Q Consensus 63 ~~~L~~li~e~~~~~iVVGlPl~-dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~T 122 (176)
.+.|.+.+ ..++..|++--|-| .|..-+. ..+++.++..++. ++ .+.+||-++
T Consensus 146 ~~~l~~~l-~~~~~~v~i~~p~nptG~~~~~-~~l~~l~~~~~~~----~~-~li~De~~~ 199 (383)
T 3kax_A 146 FEHLEKQF-QQGVKLMLLCSPHNPIGRVWKK-EELTKLGSLCTKY----NV-IVVADEIHS 199 (383)
T ss_dssp HHHHHHHH-TTTCCEEEEESSBTTTTBCCCH-HHHHHHHHHHHHH----TC-EEEEECTTT
T ss_pred HHHHHHHh-CcCCeEEEEeCCCCCCCcCcCH-HHHHHHHHHHHHC----CC-EEEEEcccc
Confidence 57788877 56799999998988 8876543 2355565555542 43 455788765
No 171
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=28.03 E-value=1.4e+02 Score=24.84 Aligned_cols=50 Identities=14% Similarity=0.135 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCCCEEEEeccCC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccH
Q 030509 63 AEDFRSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTS 123 (176)
Q Consensus 63 ~~~L~~li~e~~~~~iVVGlPl~-dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT 123 (176)
++.|.+.+++.++..|+++.|.+ .+. + .+.+.++++ +. ++ ++.+||-+++
T Consensus 174 ~~~l~~~i~~~~~~~i~~~~~~~~~~~--~-l~~i~~l~~---~~----g~-lli~Dea~~~ 224 (447)
T 3h7f_A 174 MDAVRATALEFRPKVIIAGWSAYPRVL--D-FAAFRSIAD---EV----GA-KLLVDMAHFA 224 (447)
T ss_dssp HHHHHHHHHHHCCSEEEEECSSCCSCC--C-HHHHHHHHH---HH----TC-EEEEECTTTH
T ss_pred HHHHHHHHHhcCCeEEEEcCCCCCCcc--C-HHHHHHHHH---Hc----CC-EEEEECCchh
Confidence 68889999888899999988888 443 2 234444443 32 33 5678997644
No 172
>2wfb_A Putative uncharacterized protein ORP; mixed molybdenum-copper sulphide cluster, alpha and beta protein, biosynthetic protein; 2.00A {Desulfovibrio gigas}
Probab=27.95 E-value=1.2e+02 Score=20.86 Aligned_cols=55 Identities=13% Similarity=0.097 Sum_probs=38.5
Q ss_pred HHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhccCCC
Q 030509 65 DFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDL 135 (176)
Q Consensus 65 ~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~ 135 (176)
.+.+++.+..++.+++| ..++. ....|.+. ++.++...+..|-.+|-+.|.+..+
T Consensus 58 ~~~~~l~~~gv~~vi~~------~iG~~------a~~~L~~~----GI~v~~~~~g~~i~eal~~~~~g~L 112 (120)
T 2wfb_A 58 NAAQVLAKSGAGVLLTG------YVGPK------AFQALQAA----GIKVGQDLEGLTVRQAVQRFLDGQV 112 (120)
T ss_dssp HHHHHHHHHTEEEEECS------CCCHH------HHHHHHHT----TCEEECCCTTSBHHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCCEEEEC------CCCHh------HHHHHHHC----CCEEEEcCCCCcHHHHHHHHHcCCC
Confidence 56777777999999999 45653 33567653 7888887665477888777765444
No 173
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=27.93 E-value=1.2e+02 Score=19.42 Aligned_cols=59 Identities=8% Similarity=-0.046 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHh
Q 030509 65 DFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLL 130 (176)
Q Consensus 65 ~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l 130 (176)
+..+.+.+..++.+++.+-+. +..+ .++++.|.+....+.+||+++-...+...+.+.+
T Consensus 36 ~a~~~~~~~~~dlvi~D~~l~-~~~g------~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~ 94 (124)
T 1mb3_A 36 SALSIARENKPDLILMDIQLP-EISG------LEVTKWLKEDDDLAHIPVVAVTAFAMKGDEERIR 94 (124)
T ss_dssp HHHHHHHHHCCSEEEEESBCS-SSBH------HHHHHHHHHSTTTTTSCEEEEC------CHHHHH
T ss_pred HHHHHHhcCCCCEEEEeCCCC-CCCH------HHHHHHHHcCccccCCcEEEEECCCCHHHHHHHH
Confidence 344556677899999997665 2222 2456666653123578998886554443333333
No 174
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus}
Probab=27.69 E-value=89 Score=26.46 Aligned_cols=139 Identities=8% Similarity=0.009 Sum_probs=72.2
Q ss_pred HHhhhccCCCCeEEEEecCCCeEEEEEecCCCceeccceeeeCCC-CChhhHHHHHHHHHHhcCCCEEEEeccCCCCCCc
Q 030509 12 QMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKK-NTIDLMAEDFRSLISEFNLEGFIVGYPFNRQQNA 90 (176)
Q Consensus 12 ~~~~~~~~~~~~iLglD~G~kriGvAvsd~~~~~a~Pl~~i~~~~-~~~~~~~~~L~~li~e~~~~~iVVGlPl~dG~~s 90 (176)
+++.......--++.+|-|...||+--+......++=-..+|.+. .....++.++.+.+.++++++|||+ +++
T Consensus 121 ea~~~~~~~~~~~vv~d~g~A~i~~l~~~~~~~~~~i~~~ipkK~g~~r~~F~~~V~e~~~~~~v~~iIla------GPg 194 (352)
T 3oby_A 121 RAVEDSNRPEIVMLTIEEGYAVAGVLRQWGVEEIFEERMGYGKGMGDSRKEFFGEVAAKLESFDFKYLIVA------GPG 194 (352)
T ss_dssp HHHTTSCCCCEEEEEEETTEEEEEEEETTEEEEEEEEEC--------CCCCHHHHHHHHHHHHCCSEEEEE------CST
T ss_pred HHhhccccCcEEEEEEECCcEEEEEEeCCEEEEEEEEeccCCCccchhHHHHHHHHHHHHHhcCCCEEEEE------CCH
Confidence 355543333455788999999999877654333222111122110 1113567888888888899999999 344
Q ss_pred hHHHHHHHHHHHHHhcc-CCCCCcEEEecCcccHHHHHHHhccCC-CCCCCCCCCCcHHHHHHHHHHHHhhhhh
Q 030509 91 ADAVQVKLFIDDLSATK-KLEDMKYAYWNEGFTSKGVELLLNPLD-LHPVEYKTILDKFAAVGILQEYLDNANR 162 (176)
Q Consensus 91 ~~~~~v~~Fa~~L~~~~-~~~~lpV~~~DEr~TT~~A~~~l~~~g-~~~~~~k~~iD~~AA~iILq~yL~~~~~ 162 (176)
.... .|.+.|.... .. .-.|+.+|=+++...+-.-+...+ +.. .=......-..-+++.|++....
T Consensus 195 ~~K~---~f~~~l~~~~~~l-~~kvv~v~~s~gg~~gl~Evl~~~~v~~--~L~~~k~~~E~~~le~f~~~l~~ 262 (352)
T 3oby_A 195 FAKN---DFLDFLKERYPEM-AKNAVVVDVSSVGSRGFIEILKRRVVDK--IVGEVRLAEEAEYIDRLLEGIAK 262 (352)
T ss_dssp THHH---HHHHHHHHHCHHH-HTTEEECCCCCCHHHHHHHHHHTTHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH---HHHHHHHHHHHHh-hCcEEEEECCCCchhhHHHHHhChhHHH--HHHHHHHHHHHHHHHHHHHHHhc
Confidence 4333 3433443310 00 123667886666665533322111 000 00112334455688899877643
No 175
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=27.55 E-value=1.6e+02 Score=23.54 Aligned_cols=54 Identities=6% Similarity=0.008 Sum_probs=37.2
Q ss_pred HHHHHHHHHhcCCCEEEEeccCC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccH
Q 030509 63 AEDFRSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTS 123 (176)
Q Consensus 63 ~~~L~~li~e~~~~~iVVGlPl~-dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT 123 (176)
++.|.+.+++ ++..|++-.|-| .|..-+. ...+++++..++. ++ .+++||-++.
T Consensus 169 ~~~l~~~l~~-~~~~v~~~~p~nptG~~~~~-~~l~~i~~~~~~~----~~-~li~Dea~~~ 223 (407)
T 3nra_A 169 LTGLEEAFKA-GARVFLFSNPNNPAGVVYSA-EEIGQIAALAARY----GA-TVIADQLYSR 223 (407)
T ss_dssp HHHHHHHHHT-TCCEEEEESSCTTTCCCCCH-HHHHHHHHHHHHH----TC-EEEEECTTTT
T ss_pred HHHHHHHHhh-CCcEEEEcCCCCCCCcccCH-HHHHHHHHHHHHc----CC-EEEEEccccc
Confidence 5788888876 788999999988 8876543 3355666655542 43 4567888763
No 176
>2vtf_A Endo-beta-N-acetylglucosaminidase; hydrolase, family 85, glycosidase, carbohydrat binding; HET: B3P PGE; 1.79A {Arthrobacter protophormiae} PDB: 3fhq_A* 3fha_A*
Probab=27.54 E-value=1.6e+02 Score=26.98 Aligned_cols=57 Identities=14% Similarity=0.336 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecC
Q 030509 61 LMAEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNE 119 (176)
Q Consensus 61 ~~~~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DE 119 (176)
.++++|.++++.+..|++.|-.=-+ +...+.+...+.|.+.|.+.. .++..|.++|=
T Consensus 156 ~~a~kLv~~a~~yGFDGw~IN~E~~-~~~~~~~~~l~~F~~~L~~~~-~~~~~v~WYDs 212 (626)
T 2vtf_A 156 PLADKLLEVADYYGFDGWFINQQTE-GADEGTAEAMQAFLVYLQEQK-PEGMHIMWYDS 212 (626)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECCT-TCCHHHHHHHHHHHHHHHHHS-CTTCEEEEESC
T ss_pred HHHHHHHHHHHHhCCCceEEeeccc-cCCHHHHHHHHHHHHHHHHhC-CCCcEEEEeec
Confidence 3579999999999999998874322 334567888999999998752 34577888884
No 177
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=27.51 E-value=1.3e+02 Score=19.51 Aligned_cols=61 Identities=5% Similarity=-0.019 Sum_probs=37.2
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhc
Q 030509 64 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLN 131 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~ 131 (176)
.+..+.+.+..++.+++.+-+. +..+ .++.+.|.+....+.+||+++-..-+...+.+.+.
T Consensus 39 ~~a~~~~~~~~~dlvi~D~~l~-~~~g------~~l~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~ 99 (128)
T 1jbe_A 39 VDALNKLQAGGYGFVISDWNMP-NMDG------LELLKTIRAXXAMSALPVLMVTAEAKKENIIAAAQ 99 (128)
T ss_dssp HHHHHHHTTCCCCEEEEESCCS-SSCH------HHHHHHHHC--CCTTCCEEEEESSCCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEeCCCC-CCCH------HHHHHHHHhhcccCCCcEEEEecCccHHHHHHHHH
Confidence 3444566778899999997554 2222 24666676521235789988876666665555554
No 178
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=27.46 E-value=48 Score=23.52 Aligned_cols=54 Identities=7% Similarity=-0.136 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCccc
Q 030509 63 AEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFT 122 (176)
Q Consensus 63 ~~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~T 122 (176)
.+.|.+.+++++++.||+|-.-.++-.. ...-..++++-.. . +.||..+-..-+
T Consensus 106 ~~~I~~~a~~~~~DlIV~G~~g~~~~~~---~~~Gsv~~~vl~~--~-~~PVlvv~~~~~ 159 (170)
T 2dum_A 106 WDEIVKVAEEENVSLIILPSRGKLSLSH---EFLGSTVMRVLRK--T-KKPVLIIKEVDE 159 (170)
T ss_dssp HHHHHHHHHHTTCSEEEEESCCCCC--T---TCCCHHHHHHHHH--C-SSCEEEECCCCC
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCcccc---ceechHHHHHHHh--C-CCCEEEEccCCc
Confidence 5889999999999999999542211100 0001234444432 2 689998865443
No 179
>3o8m_A Hexokinase; rnaseh-like fold, glycolysis, glucose repression binding, MIG1 binding, transferase; HET: GLC BGC; 1.42A {Kluyveromyces lactis} PDB: 3o1b_A 3o08_A* 3o1w_A* 3o5b_A* 3o4w_A 3o80_A* 3o6w_A* 1ig8_A 3b8a_X*
Probab=27.43 E-value=47 Score=29.50 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=20.4
Q ss_pred CCCeEEEEecCCCeEEEEEecCCCc
Q 030509 20 KRGRFLGLDVGDKYVGLSISDPKNK 44 (176)
Q Consensus 20 ~~~~iLglD~G~kriGvAvsd~~~~ 44 (176)
..|.+||||+|...+=|++.+..+.
T Consensus 78 E~G~~LalDlGGTn~Rv~~V~l~g~ 102 (485)
T 3o8m_A 78 ETGDFLALDLGGTNLRVVLVKLGGN 102 (485)
T ss_dssp CEEEEEEEEESSSEEEEEEEEEESS
T ss_pred cceEEEEEEecCCeEEEEEEEECCC
Confidence 3468999999999999999876554
No 180
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=27.40 E-value=1.4e+02 Score=19.79 Aligned_cols=55 Identities=5% Similarity=0.162 Sum_probs=33.7
Q ss_pred cCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhccCCC
Q 030509 73 FNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDL 135 (176)
Q Consensus 73 ~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~ 135 (176)
..++.+|+.+-+. +..+ .++++.|.+....+.+||+++-...+...+.+.+. .|.
T Consensus 61 ~~~dlvi~D~~l~-~~~g------~~~~~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~-~g~ 115 (149)
T 1k66_A 61 PRPAVILLDLNLP-GTDG------REVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYS-YSI 115 (149)
T ss_dssp CCCSEEEECSCCS-SSCH------HHHHHHHTTSTTGGGSCEEEEESCCCHHHHHHHHH-TTC
T ss_pred CCCcEEEEECCCC-CCCH------HHHHHHHHhCcccCCCeEEEEeCCCCHHHHHHHHH-CCC
Confidence 7899999986554 2222 25667777531115789888876666665555553 343
No 181
>3c6a_A Terminase large subunit; terminase nuclease, viral protein; 1.16A {Enterobacteria phage RB49} PDB: 3c6h_A
Probab=27.34 E-value=2.3e+02 Score=22.42 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=38.7
Q ss_pred CCCCeEEEEecCC----CeEEEEEecCCCceecccee---eeCCCCChhhHHHHHHHHHHhcCCCEEEEe
Q 030509 19 SKRGRFLGLDVGD----KYVGLSISDPKNKIASPLSV---LLRKKNTIDLMAEDFRSLISEFNLEGFIVG 81 (176)
Q Consensus 19 ~~~~~iLglD~G~----kriGvAvsd~~~~~a~Pl~~---i~~~~~~~~~~~~~L~~li~e~~~~~iVVG 81 (176)
+...-++|+|.+. ....+-|-|..+ .|... ...+...+..+.+.+.++...|+...|+|=
T Consensus 57 ~~~~YvigvD~A~g~~~DySv~~V~d~t~---~p~~~Va~~r~n~i~~~~la~~V~~l~~~yn~a~v~VE 123 (232)
T 3c6a_A 57 EGRKYVATLDCSEGRGQDYHALQIIDITE---FPYKQVAVYHSNTTSHFILPDIVFKYLMMYNECPVYIE 123 (232)
T ss_dssp TTCCEEEEEECCCSSSSCCEEEEEEECSS---SSEEEEEEEEESCCCTTTHHHHHHHHHHHTTSCCEEEB
T ss_pred CCCeEEEEEEcCCCCCCCCcEEEEEEecC---CcceEEEEeecCccCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 4556789999997 455555555433 23332 333223445566778899999999888885
No 182
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}
Probab=27.31 E-value=1.1e+02 Score=24.99 Aligned_cols=89 Identities=20% Similarity=0.223 Sum_probs=54.4
Q ss_pred CCeEEEEecCCCeEEEEEecCCCceeccceeeeC-----CC------CCh---h---hHHHHHHHHHHhcCCCEE-EEec
Q 030509 21 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLR-----KK------NTI---D---LMAEDFRSLISEFNLEGF-IVGY 82 (176)
Q Consensus 21 ~~~iLglD~G~kriGvAvsd~~~~~a~Pl~~i~~-----~~------~~~---~---~~~~~L~~li~e~~~~~i-VVGl 82 (176)
.+++-+||.|+--|=+.|.+.......++..... .. -++ + ..+....+++++++++.+ +|+
T Consensus 3 ~~~~A~IDiGSNsirL~I~~~~~~~~~~i~~~k~~vrLg~g~~~~g~ls~eai~r~~~~L~~f~~~~~~~~v~~v~~vA- 81 (315)
T 3mdq_A 3 SQRIGVIDMGTNTFHLLITDIVNDRPHTLVNEKSAVGLGKGGITKGFITEEAMDRALDTLKKFRVILDEHAVVHVIATG- 81 (315)
T ss_dssp -CEEEEEEECSSEEEEEEEEEETTEEEEEEEEEEECCSSTTTGGGTCCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEE-
T ss_pred CceEEEEEecCCcEEEEEEEEcCCceEEeeeceeeeeccccccccCCcCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEe-
Confidence 3678999999999999988754322222222110 00 000 1 234667778888999866 455
Q ss_pred cCCCCCCc-hHHHHHHHHHHHHHhccCCCCCcEEEec
Q 030509 83 PFNRQQNA-ADAVQVKLFIDDLSATKKLEDMKYAYWN 118 (176)
Q Consensus 83 Pl~dG~~s-~~~~~v~~Fa~~L~~~~~~~~lpV~~~D 118 (176)
|.. ..+.....|.+++++. .+++|..++
T Consensus 82 -----TsA~R~A~N~~~fl~~i~~~---tG~~i~vIs 110 (315)
T 3mdq_A 82 -----TSAVRSGSNKQVLIDRIKKE---VNIDVEVID 110 (315)
T ss_dssp -----CHHHHHCTTHHHHHHHHHHH---HCCCEEECC
T ss_pred -----eHHHHcCcCHHHHHHHHHHH---HCCCeEEeC
Confidence 332 2234457899999874 288998886
No 183
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=27.26 E-value=1.6e+02 Score=22.21 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=14.6
Q ss_pred HHHHHHHHHhcCCCEEEEe
Q 030509 63 AEDFRSLISEFNLEGFIVG 81 (176)
Q Consensus 63 ~~~L~~li~e~~~~~iVVG 81 (176)
++++.+.+.+.++|.||+.
T Consensus 21 ~~~~l~~~~~~~~D~vi~~ 39 (260)
T 2yvt_A 21 LPKLKGVIAEKQPDILVVV 39 (260)
T ss_dssp HHHHHHHHHHHCCSEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEC
Confidence 4666677777899998887
No 184
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=27.24 E-value=92 Score=21.45 Aligned_cols=46 Identities=17% Similarity=0.274 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecC
Q 030509 64 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNE 119 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DE 119 (176)
+.|.+++++++++.++|.+|.. + ....+++.+.+.+. ++.|.++-.
T Consensus 55 ~~l~~~~~~~~id~viia~~~~----~--~~~~~~i~~~l~~~----gv~v~~vP~ 100 (141)
T 3nkl_A 55 KYLERLIKKHCISTVLLAVPSA----S--QVQKKVIIESLAKL----HVEVLTIPN 100 (141)
T ss_dssp GGHHHHHHHHTCCEEEECCTTS----C--HHHHHHHHHHHHTT----TCEEEECCC
T ss_pred HHHHHHHHHCCCCEEEEeCCCC----C--HHHHHHHHHHHHHc----CCeEEECCC
Confidence 3467888999999999997643 1 13445677777753 677777653
No 185
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=26.98 E-value=40 Score=22.98 Aligned_cols=19 Identities=11% Similarity=0.216 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCCCEEEEe
Q 030509 63 AEDFRSLISEFNLEGFIVG 81 (176)
Q Consensus 63 ~~~L~~li~e~~~~~iVVG 81 (176)
.+.|.+.+++++++.||+|
T Consensus 98 ~~~I~~~a~~~~~dliV~G 116 (138)
T 1q77_A 98 SEEVKKFVEGKGYELVVWA 116 (138)
T ss_dssp HHHHHHHHTTSCCSEEEEC
T ss_pred HHHHHHHHHhcCCCEEEEe
Confidence 5889999999999999999
No 186
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=26.96 E-value=86 Score=23.82 Aligned_cols=50 Identities=16% Similarity=0.036 Sum_probs=32.4
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhc--cCCCCCcEEEe
Q 030509 63 AEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSAT--KKLEDMKYAYW 117 (176)
Q Consensus 63 ~~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~--~~~~~lpV~~~ 117 (176)
+.++.+.+. +.|+||+|-|..+++.+...+ .|.+.+... ..+.+-|+.++
T Consensus 64 ~~~~~~~i~--~AD~iVi~tP~Y~~s~p~~LK---~~iD~~~~~~~~~l~gK~v~~v 115 (199)
T 4hs4_A 64 VLTMAQQIA--TADAVVIVTPEYNYSVPGVLK---NAIDWLSRVSPQPLAGKPVALV 115 (199)
T ss_dssp HHHHHHHHH--HSSEEEEEECCBTTBCCHHHH---HHHHHHTTSSSCTTTTCEEEEE
T ss_pred HHHHHHHHH--hCCEEEEEcCccCCCcCHHHH---HHHHHhcccCCcccCCCEEEEE
Confidence 455555555 589999999999787777555 555666431 12446676655
No 187
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=26.95 E-value=2.1e+02 Score=21.88 Aligned_cols=43 Identities=12% Similarity=0.138 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCc
Q 030509 64 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEG 120 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr 120 (176)
.++.+.+.+.++++||+- |.. .+. ...+.+.+. ++|++++|..
T Consensus 58 ~~~~~~l~~~~vdGiI~~-~~~---~~~------~~~~~l~~~----~iPvV~i~~~ 100 (295)
T 3hcw_A 58 DEVYKMIKQRMVDAFILL-YSK---END------PIKQMLIDE----SMPFIVIGKP 100 (295)
T ss_dssp HHHHHHHHTTCCSEEEES-CCC---TTC------HHHHHHHHT----TCCEEEESCC
T ss_pred HHHHHHHHhCCcCEEEEc-Ccc---cCh------HHHHHHHhC----CCCEEEECCC
Confidence 456667777899999985 222 111 133445542 6788877743
No 188
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=26.93 E-value=1.1e+02 Score=22.42 Aligned_cols=47 Identities=15% Similarity=0.104 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEe
Q 030509 64 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYW 117 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~ 117 (176)
..+.+-+. +.|.||+|-|..+++.+.+ .+.|.+++.. .+.+-|+.++
T Consensus 76 ~~~~~~l~--~aD~iI~~sP~y~~~~p~~---lK~~iD~~~~--~l~gK~~~~~ 122 (191)
T 1t0i_A 76 RSWSRIVN--ALDIIVFVTPQYNWGYPAA---LKNAIDRLYH--EWHGKPALVV 122 (191)
T ss_dssp HHHHHHHH--TCSEEEEEEECBTTBCCHH---HHHHHHTCST--TTTTCEEEEE
T ss_pred HHHHHHHH--hCCEEEEEeceECCCCCHH---HHHHHHHHHh--hcCCCEEEEE
Confidence 44444443 6899999999996666654 4567777643 1335565554
No 189
>3sim_A Protein, family 18 chitinase; family 18 plant chitinase, TIM barrel, chitin binding, glyco hydrolase, hydrolase; 2.10A {Crocus vernus}
Probab=26.93 E-value=1.3e+02 Score=24.05 Aligned_cols=55 Identities=13% Similarity=0.167 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhcCCCEEEEeccCC--CCCCchHHHHHHHHHHHHHhccCCCCCcEEEecC
Q 030509 62 MAEDFRSLISEFNLEGFIVGYPFN--RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNE 119 (176)
Q Consensus 62 ~~~~L~~li~e~~~~~iVVGlPl~--dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DE 119 (176)
.++...+....+.++.||+|+|-+ +|...+... ...-+..+++...+.+ |-+||=
T Consensus 199 ~v~~~~~~g~~~p~~KlvlGlpa~~~~~g~~~~~~-~~~~l~~~k~~~~~gG--VmlW~a 255 (275)
T 3sim_A 199 FLGYYNNAASKYKGGNVLISFSTGPHPGGLPVDKG-FFDAATSLKNKGKLHG--IAVWTA 255 (275)
T ss_dssp HHHHHHHHHHHTTTSCEEEEEECSSSCCSSCTTTT-HHHHHHHHHHTTCCCC--EEEECH
T ss_pred HHHHHHHHhccCChhheEEEEeecCCCCCcCChHH-HHHHHHHHHhCCCCCc--EEEEec
Confidence 345555555566889999999987 333332111 1233344544323433 677764
No 190
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=26.90 E-value=46 Score=22.74 Aligned_cols=22 Identities=5% Similarity=0.037 Sum_probs=19.4
Q ss_pred HHHHHHHHHhcCCCEEEEeccC
Q 030509 63 AEDFRSLISEFNLEGFIVGYPF 84 (176)
Q Consensus 63 ~~~L~~li~e~~~~~iVVGlPl 84 (176)
.+.|.+.+++++++.||+|-.-
T Consensus 99 ~~~I~~~a~~~~~dliV~G~~~ 120 (147)
T 3hgm_A 99 SRTIVRFARKRECDLVVIGAQG 120 (147)
T ss_dssp HHHHHHHHHHTTCSEEEECSSC
T ss_pred HHHHHHHHHHhCCCEEEEeCCC
Confidence 5889999999999999999653
No 191
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=26.77 E-value=1.2e+02 Score=20.53 Aligned_cols=40 Identities=23% Similarity=0.358 Sum_probs=24.9
Q ss_pred CCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEE
Q 030509 74 NLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAY 116 (176)
Q Consensus 74 ~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~ 116 (176)
+.+.||+|-|...|...+. ..++.|.+++... +.+.++..
T Consensus 46 ~~d~vi~g~p~y~~~~~~~-~~~~~fl~~l~~~--l~~k~~~~ 85 (137)
T 2fz5_A 46 SKDVILLGCPAMGSEELED-SVVEPFFTDLAPK--LKGKKVGL 85 (137)
T ss_dssp TCSEEEEECCCBTTTBCCH-HHHHHHHHHHGGG--CSSCEEEE
T ss_pred cCCEEEEEccccCCCCCCH-HHHHHHHHHhhhh--cCCCEEEE
Confidence 5789999999884444432 0245787877542 34556553
No 192
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=26.54 E-value=1.2e+02 Score=24.39 Aligned_cols=54 Identities=13% Similarity=0.109 Sum_probs=36.5
Q ss_pred HHHHHHHHHhcCCCEEEEeccCC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCccc
Q 030509 63 AEDFRSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFT 122 (176)
Q Consensus 63 ~~~L~~li~e~~~~~iVVGlPl~-dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~T 122 (176)
.+.|.+.+++.++..|++--|-| .|..-+ ....+++++..++. ++ .+.+||-++
T Consensus 153 ~~~l~~~l~~~~~~~v~~~~~~nptG~~~~-~~~l~~i~~~~~~~----~~-~li~De~~~ 207 (399)
T 1c7n_A 153 FQKLEKLSKDKNNKALLFCSPHNPVGRVWK-KDELQKIKDIVLKS----DL-MLWSDEIHF 207 (399)
T ss_dssp HHHHHHHHTCTTEEEEEEESSBTTTTBCCC-HHHHHHHHHHHHHS----SC-EEEEECTTT
T ss_pred HHHHHHHhccCCCcEEEEcCCCCCCCcCcC-HHHHHHHHHHHHHc----CC-EEEEEcccc
Confidence 57888888766788888888888 787543 23556666666552 44 455677665
No 193
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=26.37 E-value=2e+02 Score=21.39 Aligned_cols=44 Identities=7% Similarity=0.117 Sum_probs=23.8
Q ss_pred HHHHHHHHhcCCCEEEEeccCC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcc
Q 030509 64 EDFRSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGF 121 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVGlPl~-dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~ 121 (176)
..+.+.+...++++||+- |.. .. .+ +.+.+.+. ++|++++|...
T Consensus 48 ~~~~~~l~~~~vdgiIi~-~~~~~~--~~-------~~~~~~~~----~iPvV~~~~~~ 92 (272)
T 3o74_A 48 RQLQQLFRARRCDALFVA-SCLPPE--DD-------SYRELQDK----GLPVIAIDRRL 92 (272)
T ss_dssp HHHHHHHHHTTCSEEEEC-CCCCSS--CC-------HHHHHHHT----TCCEEEESSCC
T ss_pred HHHHHHHHHcCCCEEEEe-cCcccc--HH-------HHHHHHHc----CCCEEEEccCC
Confidence 344444556789999885 333 21 21 22345442 66777776543
No 194
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=26.28 E-value=52 Score=23.37 Aligned_cols=21 Identities=14% Similarity=0.376 Sum_probs=19.0
Q ss_pred HHHHHHHHHhcCCCEEEEecc
Q 030509 63 AEDFRSLISEFNLEGFIVGYP 83 (176)
Q Consensus 63 ~~~L~~li~e~~~~~iVVGlP 83 (176)
.+.|.+.+++++++.||+|-.
T Consensus 106 ~~~I~~~a~~~~~DLIV~G~~ 126 (155)
T 3dlo_A 106 PDDIVDFADEVDAIAIVIGIR 126 (155)
T ss_dssp HHHHHHHHHHTTCSEEEEECC
T ss_pred HHHHHHHHHHcCCCEEEECCC
Confidence 589999999999999999954
No 195
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=26.24 E-value=1.2e+02 Score=24.54 Aligned_cols=55 Identities=4% Similarity=-0.010 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCCCEE-EEeccCC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccH
Q 030509 63 AEDFRSLISEFNLEGF-IVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTS 123 (176)
Q Consensus 63 ~~~L~~li~e~~~~~i-VVGlPl~-dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT 123 (176)
++.|.+.+++.++..| |+-.|-| .|..-+. ...+++++..++. ++. +.+||-++.
T Consensus 151 ~~~l~~~l~~~~~~~v~~~~~~~nptG~~~~~-~~l~~l~~~~~~~----~~~-li~De~~~~ 207 (397)
T 2zyj_A 151 LDALEEVLKRERPRFLYLIPSFQNPTGGLTPL-PARKRLLQMVMER----GLV-VVEDDAYRE 207 (397)
T ss_dssp HHHHHHHHHHCCCSCEEECCBSCTTTCCBCCH-HHHHHHHHHHHHH----TCC-EEEECTTTT
T ss_pred HHHHHHHHhhcCCeEEEECCCCcCCCCCcCCH-HHHHHHHHHHHHc----CCE-EEEeCCccc
Confidence 5788888877678876 5688878 8876543 3445566555542 443 457777653
No 196
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=25.66 E-value=1.1e+02 Score=24.56 Aligned_cols=54 Identities=7% Similarity=0.034 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcCCCEEEEeccCC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCccc
Q 030509 63 AEDFRSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFT 122 (176)
Q Consensus 63 ~~~L~~li~e~~~~~iVVGlPl~-dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~T 122 (176)
.+.|.+.+++.++..|++--|-| .|..-+. ...+++++..++. ++ .+.+||-++
T Consensus 151 ~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~-~~l~~l~~~~~~~----~~-~li~De~~~ 205 (390)
T 1d2f_A 151 MGKLEAVLAKPECKIMLLCSPQNPTGKVWTC-DELEIMADLCERH----GV-RVISDEIHM 205 (390)
T ss_dssp HHHHHHHHTSTTEEEEEEESSCTTTCCCCCT-THHHHHHHHHHHT----TC-EEEEECTTT
T ss_pred HHHHHHHhccCCCeEEEEeCCCCCCCcCcCH-HHHHHHHHHHHHc----CC-EEEEEcccc
Confidence 57888888766788888888877 7876442 2344555555542 43 345676654
No 197
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=25.49 E-value=1.3e+02 Score=24.12 Aligned_cols=44 Identities=7% Similarity=0.187 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEe
Q 030509 64 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYW 117 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~ 117 (176)
+.+..+ .+...|.|.|| |+.+-....+.+..+++++ +++|+++.
T Consensus 27 ~~l~~~-~~~GtDaI~vG-----gs~gvt~~~~~~~v~~ik~----~~~Piil~ 70 (235)
T 3w01_A 27 DDLDAI-CMSQTDAIMIG-----GTDDVTEDNVIHLMSKIRR----YPLPLVLE 70 (235)
T ss_dssp HHHHHH-HTSSCSEEEEC-----CSSCCCHHHHHHHHHHHTT----SCSCEEEE
T ss_pred HHHHHH-HHcCCCEEEEC-----CcCCcCHHHHHHHHHHhcC----cCCCEEEe
Confidence 344443 57789999999 7777777788888899985 37888764
No 198
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=25.44 E-value=1.4e+02 Score=21.84 Aligned_cols=48 Identities=17% Similarity=0.182 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCCEEEEeccCC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEEe
Q 030509 63 AEDFRSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYW 117 (176)
Q Consensus 63 ~~~L~~li~e~~~~~iVVGlPl~-dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~ 117 (176)
++++.+.+.+.++|.||+.-=+. .|. ....+.+|.+.|++. +.|++++
T Consensus 21 ~~~~~~~~~~~~~D~vi~~GDl~~~~~---~~~~~~~~~~~l~~~----~~pv~~v 69 (228)
T 1uf3_A 21 LEKFVKLAPDTGADAIALIGNLMPKAA---KSRDYAAFFRILSEA----HLPTAYV 69 (228)
T ss_dssp HHHHHTHHHHHTCSEEEEESCSSCTTC---CHHHHHHHHHHHGGG----CSCEEEE
T ss_pred HHHHHHHHhhcCCCEEEECCCCCCCCC---CHHHHHHHHHHHHhc----CCcEEEE
Confidence 46666777777899888763333 221 234456777778752 5688877
No 199
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=25.39 E-value=81 Score=23.72 Aligned_cols=36 Identities=19% Similarity=0.409 Sum_probs=25.1
Q ss_pred HHHHHHh-cCCCEEEEeccCCCCCCchHHHHHHHHHHHHH
Q 030509 66 FRSLISE-FNLEGFIVGYPFNRQQNAADAVQVKLFIDDLS 104 (176)
Q Consensus 66 L~~li~e-~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~ 104 (176)
+.+++++ ...|.||+|-|..+++...+ .+.|.+++-
T Consensus 78 ~~~~~~~l~~AD~iV~~~P~y~~~~pa~---lK~~iD~~~ 114 (212)
T 3r6w_A 78 SDQLVGELFDSDLLVISTPMYNFSVPSG---LKAWIDQIV 114 (212)
T ss_dssp HHHHHHHHHHCSEEEEEEECBTTBCCHH---HHHHHHHHC
T ss_pred HHHHHHHHHhCCEEEEEcCcccccCCHH---HHHHHHHHh
Confidence 4444433 36899999999997776664 456888773
No 200
>1cza_N Hexokinase type I; structurally homologous domains, transferase; HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3 c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A* 1hkc_A* 1bg3_A* 2nzt_A*
Probab=25.17 E-value=54 Score=31.28 Aligned_cols=25 Identities=20% Similarity=0.462 Sum_probs=21.1
Q ss_pred CCCeEEEEecCCCeEEEEEecCCCc
Q 030509 20 KRGRFLGLDVGDKYVGLSISDPKNK 44 (176)
Q Consensus 20 ~~~~iLglD~G~kriGvAvsd~~~~ 44 (176)
..|.+||||+|.-++=+++.+..+.
T Consensus 76 E~G~~laiDlGGTnirv~lv~~~G~ 100 (917)
T 1cza_N 76 EKGDFIALDLGGSSFRILRVQVNHE 100 (917)
T ss_dssp CCEEEEEEEESSSSEEEEEEEEEEE
T ss_pred CcceEEEEEeCCCeEEEEEEEecCC
Confidence 3488999999999999999987653
No 201
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=24.94 E-value=2.5e+02 Score=22.55 Aligned_cols=51 Identities=2% Similarity=-0.059 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCCEEEEeccCC-CCCCch-HHHHHHHHHHHHHhccCCCCCcEEEe
Q 030509 63 AEDFRSLISEFNLEGFIVGYPFN-RQQNAA-DAVQVKLFIDDLSATKKLEDMKYAYW 117 (176)
Q Consensus 63 ~~~L~~li~e~~~~~iVVGlPl~-dG~~s~-~~~~v~~Fa~~L~~~~~~~~lpV~~~ 117 (176)
++++.+.+.+++++.||++-=+- .+..+. ....+.++..+|.. . ++||+++
T Consensus 29 ~~~~~~~~~~~~~D~vl~~GDl~d~~~~~~~~~~~~~~~l~~l~~---~-~~~v~~v 81 (333)
T 1ii7_A 29 FKNALEIAVQENVDFILIAGDLFHSSRPSPGTLKKAIALLQIPKE---H-SIPVFAI 81 (333)
T ss_dssp HHHHHHHHHHTTCSEEEEESCSBSSSSCCHHHHHHHHHHHHHHHT---T-TCCEEEE
T ss_pred HHHHHHHHHhcCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHH---C-CCcEEEe
Confidence 56777778889999999874443 233332 22334445555553 1 5788877
No 202
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=24.92 E-value=86 Score=25.37 Aligned_cols=43 Identities=16% Similarity=0.319 Sum_probs=34.6
Q ss_pred CchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhccCCC
Q 030509 89 NAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDL 135 (176)
Q Consensus 89 ~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~ 135 (176)
..+..+.+.++.+.+++. +++++|++...++..|+.+-.+.|.
T Consensus 219 ~eps~~~l~~l~~~ik~~----~v~~If~e~~~~~~~~~~ia~~~g~ 261 (291)
T 1pq4_A 219 QEPSAQELKQLIDTAKEN----NLTMVFGETQFSTKSSEAIAAEIGA 261 (291)
T ss_dssp BCCCHHHHHHHHHHHHTT----TCCEEEEETTSCCHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHc----CCCEEEEeCCCChHHHHHHHHHcCC
Confidence 446677888888888873 8999999999999999887666664
No 203
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=24.87 E-value=1.8e+02 Score=22.64 Aligned_cols=50 Identities=10% Similarity=0.036 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEec
Q 030509 63 AEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWN 118 (176)
Q Consensus 63 ~~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~D 118 (176)
.+.|.+.+++++++.||+|-- |..+-.....-..++.+-.. ..+||..+-
T Consensus 255 ~~~I~~~a~~~~~dLiV~G~~---g~~~~~~~~~Gsv~~~vl~~---~~~pVLvv~ 304 (319)
T 3olq_A 255 EQVIPQVCEELNAGIVVLGIL---GRTGLSAAFLGNTAEQLIDH---IKCDLLAIK 304 (319)
T ss_dssp HHHHHHHHHHTTEEEEEEECC---SCCSTHHHHHHHHHHHHHTT---CCSEEEEEC
T ss_pred HHHHHHHHHHhCCCEEEEecc---CccCCccccccHHHHHHHhh---CCCCEEEEC
Confidence 588899999999999999931 22222222334556666653 378988874
No 204
>1eo1_A Hypothetical protein MTH1175; mixed A/B protein, mixed beta sheet, strand order 321456; NMR {Methanothermobacterthermautotrophicus} SCOP: c.55.5.1
Probab=24.72 E-value=1.7e+02 Score=20.06 Aligned_cols=52 Identities=12% Similarity=0.089 Sum_probs=36.6
Q ss_pred HHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhccC
Q 030509 65 DFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPL 133 (176)
Q Consensus 65 ~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~ 133 (176)
.+.+++.+..++.+|+| ..++. ....|.+. ++.++... ..|-.+|-+.|.+.
T Consensus 56 ~~~~~l~~~gv~~vi~~------~iG~~------a~~~L~~~----GI~v~~~~-~~~i~eal~~~~~g 107 (124)
T 1eo1_A 56 RTAQIIANNGVKAVIAS------SPGPN------AFEVLNEL----GIKIYRAT-GTSVEENLKLFTEG 107 (124)
T ss_dssp THHHHHHHTTCCEEEEC------CSSHH------HHHHHHHH----TCEEEECC-SCCHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCEEEEC------CcCHH------HHHHHHHC----CCEEEEcC-CCCHHHHHHHHHhC
Confidence 56777888999999999 45653 34567653 78888864 46777777776543
No 205
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=24.47 E-value=1.6e+02 Score=19.53 Aligned_cols=63 Identities=10% Similarity=0.052 Sum_probs=38.0
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhccCCC
Q 030509 64 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDL 135 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~ 135 (176)
.+..+.+.+..++.+++.+-+. |..+ .++.+.|.+. .+..|++++-...+...+.+.+..+|.
T Consensus 34 ~~a~~~~~~~~~dlvl~D~~lp-~~~g------~~~~~~l~~~--~~~~~ii~~s~~~~~~~~~~~~~~~ga 96 (139)
T 2jk1_A 34 EAAIAILEEEWVQVIICDQRMP-GRTG------VDFLTEVRER--WPETVRIIITGYTDSASMMAAINDAGI 96 (139)
T ss_dssp HHHHHHHHHSCEEEEEEESCCS-SSCH------HHHHHHHHHH--CTTSEEEEEESCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCCCEEEEeCCCC-CCcH------HHHHHHHHHh--CCCCcEEEEeCCCChHHHHHHHHhhch
Confidence 3445566677899999987554 2222 2455666653 357888887655555555555554443
No 206
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=24.22 E-value=1.8e+02 Score=23.28 Aligned_cols=51 Identities=4% Similarity=0.025 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhcCCCEEEEecc-CC-CCCCchHH-HHHHHHHHHHHhccCCCCCcEEEe
Q 030509 62 MAEDFRSLISEFNLEGFIVGYP-FN-RQQNAADA-VQVKLFIDDLSATKKLEDMKYAYW 117 (176)
Q Consensus 62 ~~~~L~~li~e~~~~~iVVGlP-l~-dG~~s~~~-~~v~~Fa~~L~~~~~~~~lpV~~~ 117 (176)
.++++.+.+++++++.||+.-= +. .+..+..+ ..+.+|.++|.+ .+||+++
T Consensus 49 ~l~~lv~~~~~~~~D~vliaGD~l~d~~~~~~~~~~~~~~~l~~L~~-----~~pv~~i 102 (336)
T 2q8u_A 49 ALDKVVEEAEKREVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMR-----TAPVVVL 102 (336)
T ss_dssp HHHHHHHHHHHHTCSEEEEESCSBSCSSCCCHHHHHHHHHHHHHHHH-----HSCEEEC
T ss_pred HHHHHHHHHHHhCCCEEEECCccccCCCCCCHHHHHHHHHHHHHHHh-----cCCEEEE
Confidence 4688888888999999988754 44 34444332 344555556653 1577766
No 207
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=24.08 E-value=57 Score=22.29 Aligned_cols=21 Identities=5% Similarity=0.126 Sum_probs=18.6
Q ss_pred HHHHHH-HHHhcCCCEEEEecc
Q 030509 63 AEDFRS-LISEFNLEGFIVGYP 83 (176)
Q Consensus 63 ~~~L~~-li~e~~~~~iVVGlP 83 (176)
.+.|.+ .+++++++.||+|-.
T Consensus 96 ~~~I~~~~a~~~~~dliV~G~~ 117 (146)
T 3s3t_A 96 KHTIEDYAKQHPEIDLIVLGAT 117 (146)
T ss_dssp HHHHHHHHHHSTTCCEEEEESC
T ss_pred HHHHHHHHHhhcCCCEEEECCC
Confidence 588999 999999999999954
No 208
>1ezw_A Coenzyme F420-dependent N5,N10- methylenetetrahydromethanopterin reductase; (beta, alpha)8 barrel, TIM barrel, oxidoreductase; 1.65A {Methanopyrus kandleri} SCOP: c.1.16.3
Probab=24.04 E-value=1.1e+02 Score=24.91 Aligned_cols=41 Identities=15% Similarity=0.327 Sum_probs=26.6
Q ss_pred ChhhHHHHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHH
Q 030509 58 TIDLMAEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDL 103 (176)
Q Consensus 58 ~~~~~~~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L 103 (176)
+++.+.++|.++.+ ..++.|+++.|... ...+.++.|++.+
T Consensus 303 tpe~v~~~l~~~~~-~G~d~~~l~~~~~~----~~~~~l~~~a~~V 343 (349)
T 1ezw_A 303 DPDTVVDKIEELLK-AGVTQVVVGSPIGP----DKEKAIELVGQEV 343 (349)
T ss_dssp SHHHHHHHHHHHHH-TTCCEEEECTTBCS----SHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHh-cCCCEEEEcCCCCc----cHHHHHHHHHHHH
Confidence 44566788888764 78999998766541 1344556676654
No 209
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=23.99 E-value=2.5e+02 Score=21.59 Aligned_cols=96 Identities=14% Similarity=0.136 Sum_probs=60.9
Q ss_pred ccceeeeCCCCChhhHHHHHHHHHHhcCCCEEEE-eccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHH
Q 030509 47 SPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV-GYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKG 125 (176)
Q Consensus 47 ~Pl~~i~~~~~~~~~~~~~L~~li~e~~~~~iVV-GlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~ 125 (176)
..+.++.-...-+ .++|.+.+.+++++.|.+ | +...+.....++++.+.|++.+...++||..=---+|-.-
T Consensus 119 ~G~~Vi~LG~~vp---~e~iv~~~~~~~~d~v~l~~----S~l~~~~~~~~~~~i~~l~~~~~~~~v~v~vGG~~~~~~~ 191 (215)
T 3ezx_A 119 NGFQIVDLGVDVL---NENVVEEAAKHKGEKVLLVG----SALMTTSMLGQKDLMDRLNEEKLRDSVKCMFGGAPVSDKW 191 (215)
T ss_dssp TSCEEEECCSSCC---HHHHHHHHHHTTTSCEEEEE----ECSSHHHHTHHHHHHHHHHHTTCGGGSEEEEESSSCCHHH
T ss_pred CCCeEEEcCCCCC---HHHHHHHHHHcCCCEEEEEc----hhcccCcHHHHHHHHHHHHHcCCCCCCEEEEECCCCCHHH
Confidence 4556664322222 488999999999998888 4 4566666677889999998752112577766555555444
Q ss_pred HHHHhccCCCCCCCCCCCCcHHHHHHHHHHHH
Q 030509 126 VELLLNPLDLHPVEYKTILDKFAAVGILQEYL 157 (176)
Q Consensus 126 A~~~l~~~g~~~~~~k~~iD~~AA~iILq~yL 157 (176)
|++. |- .--.-|+..|+-+.++++
T Consensus 192 a~~i----Ga----d~~~~dA~~av~~a~~l~ 215 (215)
T 3ezx_A 192 IEEI----GA----DATAENAAEAAKVALEVM 215 (215)
T ss_dssp HHHH----TC----CBCCSSHHHHHHHHHHTC
T ss_pred HHHh----CC----eEEECCHHHHHHHHHHhC
Confidence 4433 21 112458888888887763
No 210
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=23.87 E-value=2.3e+02 Score=21.10 Aligned_cols=45 Identities=9% Similarity=0.127 Sum_probs=24.4
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecC
Q 030509 63 AEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNE 119 (176)
Q Consensus 63 ~~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DE 119 (176)
.+.+..++...++++||+- |.+ .... ..+.+.+.+. ++|++++|.
T Consensus 48 ~~~i~~l~~~~~vdgii~~-~~~-~~~~------~~~~~~~~~~----~ipvV~~~~ 92 (276)
T 3ksm_A 48 IQILSYHLSQAPPDALILA-PNS-AEDL------TPSVAQYRAR----NIPVLVVDS 92 (276)
T ss_dssp HHHHHHHHHHSCCSEEEEC-CSS-TTTT------HHHHHHHHHT----TCCEEEESS
T ss_pred HHHHHHHHHhCCCCEEEEe-CCC-HHHH------HHHHHHHHHC----CCcEEEEec
Confidence 3556666665449999986 222 1111 1234455542 667777764
No 211
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=23.78 E-value=1.8e+02 Score=23.46 Aligned_cols=62 Identities=8% Similarity=0.191 Sum_probs=40.0
Q ss_pred HHHHHHHHHhcCCCEEEEeccCC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEEecC------cccHHHHHHHhc
Q 030509 63 AEDFRSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNE------GFTSKGVELLLN 131 (176)
Q Consensus 63 ~~~L~~li~e~~~~~iVVGlPl~-dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DE------r~TT~~A~~~l~ 131 (176)
.-++.+.+++..++++++--|.. ..+. .. +.+|-+.+.+. . ++||+++|= .+|.....++..
T Consensus 86 ai~la~~a~~~Gadavlv~~P~y~~~~~---~~-l~~~f~~ia~a--~-~lPiilYn~P~~tg~~l~~~~~~~La~ 154 (292)
T 3daq_A 86 SIQASIQAKALGADAIMLITPYYNKTNQ---RG-LVKHFEAIADA--V-KLPVVLYNVPSRTNMTIEPETVEILSQ 154 (292)
T ss_dssp HHHHHHHHHHHTCSEEEEECCCSSCCCH---HH-HHHHHHHHHHH--H-CSCEEEEECHHHHSCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCCCH---HH-HHHHHHHHHHh--C-CCCEEEEecccccCCCCCHHHHHHHhc
Confidence 34566777888999999999987 5432 23 33444555543 2 799999883 466666555543
No 212
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A
Probab=23.60 E-value=69 Score=27.21 Aligned_cols=22 Identities=18% Similarity=0.397 Sum_probs=16.8
Q ss_pred eEEEEecCCCeEEEEEecCCCc
Q 030509 23 RFLGLDVGDKYVGLSISDPKNK 44 (176)
Q Consensus 23 ~iLglD~G~kriGvAvsd~~~~ 44 (176)
.++|+|+|...+=+|..+.++.
T Consensus 1 ~iiG~DIGGAn~K~a~~~~~g~ 22 (334)
T 3cet_A 1 MILGIDIGGANTKITELHENGE 22 (334)
T ss_dssp CEEEEEEC--CEEEEEECSTTC
T ss_pred CeeEEEecccceeeeeecCCCc
Confidence 3899999999999998776664
No 213
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=23.51 E-value=1.6e+02 Score=19.16 Aligned_cols=59 Identities=12% Similarity=0.007 Sum_probs=35.2
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHh
Q 030509 64 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLL 130 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l 130 (176)
++..+.+.+..++.|++.+-+.+ ..+ .+|++.|.+....+..+|++....-.. ...+.+
T Consensus 40 ~~a~~~l~~~~~dlii~d~~l~~-~~g------~~~~~~l~~~~~~~~~~ii~~~~~~~~-~~~~~~ 98 (132)
T 3lte_A 40 FDAGIKLSTFEPAIMTLDLSMPK-LDG------LDVIRSLRQNKVANQPKILVVSGLDKA-KLQQAV 98 (132)
T ss_dssp HHHHHHHHHTCCSEEEEESCBTT-BCH------HHHHHHHHTTTCSSCCEEEEECCSCSH-HHHHHH
T ss_pred HHHHHHHHhcCCCEEEEecCCCC-CCH------HHHHHHHHhcCccCCCeEEEEeCCChH-HHHHHH
Confidence 45556677889999999976652 122 356777776321235667777655444 444443
No 214
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=23.48 E-value=2.4e+02 Score=21.18 Aligned_cols=82 Identities=12% Similarity=0.077 Sum_probs=51.9
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhccCCCCCCCCCC
Q 030509 63 AEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 142 (176)
Q Consensus 63 ~~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~~~~~~k~ 142 (176)
.++|.+.+.+++++.|.+- ...+.....++++++.|++.+..+++||..--=..|..-|++. |. .--
T Consensus 128 ~~~l~~~~~~~~~d~v~lS-----~~~~~~~~~~~~~i~~l~~~~~~~~~~v~vGG~~~~~~~~~~~----ga----d~~ 194 (210)
T 1y80_A 128 PGKFVEAVKKYQPDIVGMS-----ALLTTTMMNMKSTIDALIAAGLRDRVKVIVGGAPLSQDFADEI----GA----DGY 194 (210)
T ss_dssp HHHHHHHHHHHCCSEEEEE-----CCSGGGTHHHHHHHHHHHHTTCGGGCEEEEESTTCCHHHHHHH----TC----SEE
T ss_pred HHHHHHHHHHcCCCEEEEe-----ccccccHHHHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHc----CC----eEE
Confidence 4788888899999977776 3344455667888888886421135777765544443333222 21 123
Q ss_pred CCcHHHHHHHHHHHH
Q 030509 143 ILDKFAAVGILQEYL 157 (176)
Q Consensus 143 ~iD~~AA~iILq~yL 157 (176)
.-|...|+-+.++++
T Consensus 195 ~~da~~av~~~~~l~ 209 (210)
T 1y80_A 195 APDAASATELCRQLL 209 (210)
T ss_dssp CSSHHHHHHHHHHHC
T ss_pred ECCHHHHHHHHHHHh
Confidence 468888888888775
No 215
>2xwp_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; HET: SIR; 1.90A {Salmonella enterica} PDB: 1qgo_A*
Probab=23.48 E-value=1.6e+02 Score=23.29 Aligned_cols=55 Identities=15% Similarity=-0.002 Sum_probs=37.0
Q ss_pred CEEEEeccCCCCCCchHHH--HHHHHHHHHHhccCCCCCcEEEe--------------c-CcccHHHHHHHhccCCCC
Q 030509 76 EGFIVGYPFNRQQNAADAV--QVKLFIDDLSATKKLEDMKYAYW--------------N-EGFTSKGVELLLNPLDLH 136 (176)
Q Consensus 76 ~~iVVGlPl~dG~~s~~~~--~v~~Fa~~L~~~~~~~~lpV~~~--------------D-Er~TT~~A~~~l~~~g~~ 136 (176)
..++|| .||..+.+. .++.+++++++. +|+++|.+- + ..-|-.+|-+.|...|.+
T Consensus 4 aillv~----hGSr~~~~~~~~~~~~~~~v~~~--~p~~~V~~af~s~~i~~~l~~~~g~~~psi~~aL~~l~~~G~~ 75 (264)
T 2xwp_A 4 ALLVVS----FGTSYHDTCEKNIVACERDLAAS--CPDRDLFRAFTSGMIIRKLRQRDGIDIDTPLQALQKLAAQGYQ 75 (264)
T ss_dssp EEEEEE----CCCSCHHHHHHHHHHHHHHHHHH--CTTSEEEEEESCHHHHHHHHHHHCCCCCCHHHHHHHHHHHTCC
T ss_pred eEEEEE----CCCCCHHHHHHHHHHHHHHHHHH--CCCCeEEeehhhHHHHHHHHHhcCCCCCCHHHHHHHHHhCCCC
Confidence 357888 899887665 567889999874 678887643 1 235666666666655543
No 216
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=23.47 E-value=2e+02 Score=20.39 Aligned_cols=59 Identities=10% Similarity=0.017 Sum_probs=38.7
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhc
Q 030509 64 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLN 131 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~ 131 (176)
++..+.+.++.++.|++.+-+.+ ..+ .++++.|.+. .+.+||+++-..-+...+.+.+.
T Consensus 41 ~~al~~~~~~~~dlvl~D~~lp~-~~g------~~~~~~l~~~--~~~~~ii~lt~~~~~~~~~~a~~ 99 (184)
T 3rqi_A 41 DEALKLAGAEKFEFITVXLHLGN-DSG------LSLIAPLCDL--QPDARILVLTGYASIATAVQAVK 99 (184)
T ss_dssp HHHHHHHTTSCCSEEEECSEETT-EES------HHHHHHHHHH--CTTCEEEEEESSCCHHHHHHHHH
T ss_pred HHHHHHHhhCCCCEEEEeccCCC-ccH------HHHHHHHHhc--CCCCCEEEEeCCCCHHHHHHHHH
Confidence 44556678889999999876551 112 2455666653 45889998877766666655554
No 217
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=23.45 E-value=1.9e+02 Score=23.56 Aligned_cols=55 Identities=11% Similarity=0.170 Sum_probs=37.2
Q ss_pred HHHHHHHHHhc-----CCCEEEEeccCC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccH
Q 030509 63 AEDFRSLISEF-----NLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTS 123 (176)
Q Consensus 63 ~~~L~~li~e~-----~~~~iVVGlPl~-dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT 123 (176)
.+.|.+.++++ ++..|++--|-| .|..-+. ..++++++..++. ++ ++.+||-++-
T Consensus 172 ~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~-~~l~~l~~~~~~~----~~-~li~Dea~~~ 232 (428)
T 1iay_A 172 SKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDK-DTLKSVLSFTNQH----NI-HLVCDEIYAA 232 (428)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCH-HHHHHHHHHHHTT----TC-EEEEECTTGG
T ss_pred HHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCH-HHHHHHHHHHHHC----Ce-EEEEeccccc
Confidence 57777777653 678889999988 8876543 4556666666542 54 4567888763
No 218
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=22.62 E-value=1.7e+02 Score=19.18 Aligned_cols=86 Identities=5% Similarity=-0.059 Sum_probs=47.6
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhccCCCCCCCCCCC
Q 030509 64 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~~~~~~k~~ 143 (176)
++..+.+.+..++.|++.+-+.++..+ .++++.|.+. +.+||+++-...+.....+.+. .|...--. ++
T Consensus 44 ~~a~~~~~~~~~dlii~d~~~~~~~~g------~~~~~~l~~~---~~~~ii~ls~~~~~~~~~~~~~-~g~~~~l~-kp 112 (140)
T 3cg0_A 44 EEAVRCAPDLRPDIALVDIMLCGALDG------VETAARLAAG---CNLPIIFITSSQDVETFQRAKR-VNPFGYLA-KP 112 (140)
T ss_dssp HHHHHHHHHHCCSEEEEESSCCSSSCH------HHHHHHHHHH---SCCCEEEEECCCCHHHHHHHHT-TCCSEEEE-ES
T ss_pred HHHHHHHHhCCCCEEEEecCCCCCCCH------HHHHHHHHhC---CCCCEEEEecCCCHHHHHHHHh-cCCCEEEe-CC
Confidence 455566677889999999655312222 2455566542 3789988877766666655554 44432211 23
Q ss_pred CcHHHHHHHHHHHHhhh
Q 030509 144 LDKFAAVGILQEYLDNA 160 (176)
Q Consensus 144 iD~~AA~iILq~yL~~~ 160 (176)
++.-.-.-.++..+...
T Consensus 113 ~~~~~l~~~i~~~~~~~ 129 (140)
T 3cg0_A 113 VAADTLHRSIEMAIHKK 129 (140)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcc
Confidence 44333333345555443
No 219
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=22.61 E-value=2.2e+02 Score=23.56 Aligned_cols=51 Identities=8% Similarity=-0.083 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCCCEEEEeccCC-CCCCchH-HHHHHHHHHHHHhccCCCCCcEEEe
Q 030509 63 AEDFRSLISEFNLEGFIVGYPFN-RQQNAAD-AVQVKLFIDDLSATKKLEDMKYAYW 117 (176)
Q Consensus 63 ~~~L~~li~e~~~~~iVVGlPl~-dG~~s~~-~~~v~~Fa~~L~~~~~~~~lpV~~~ 117 (176)
++++.+.+.+.+|+.||+.-=+. .+..+.. ...+.++..+|.. .++||+++
T Consensus 49 l~~~v~~~~~~~~D~VliaGDl~d~~~p~~~~~~~~~~~l~~L~~----~~~pv~~v 101 (386)
T 3av0_A 49 FKLCIKKILEIKPDVVLHSGDLFNDLRPPVKALRIAMQAFKKLHE----NNIKVYIV 101 (386)
T ss_dssp HHHHHHHHHTTCCSEEEECSCSBSSSSCCHHHHHHHHHHHHHHHH----TTCEEEEC
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHh----cCCcEEEE
Confidence 56777777788999999874444 3433322 2334444555553 15788776
No 220
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=22.53 E-value=1.8e+02 Score=19.58 Aligned_cols=52 Identities=4% Similarity=0.098 Sum_probs=32.8
Q ss_pred cCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhc
Q 030509 73 FNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLN 131 (176)
Q Consensus 73 ~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~ 131 (176)
..++.|++.+-+. |..+ .++++.|++....+.+||+++-...+...+.+.+.
T Consensus 60 ~~~dlillD~~lp-~~~g------~~l~~~l~~~~~~~~~piiils~~~~~~~~~~~~~ 111 (149)
T 1i3c_A 60 PRPNLILLDLNLP-KKDG------REVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYE 111 (149)
T ss_dssp CCCSEEEECSCCS-SSCH------HHHHHHHHHCTTTTTSCEEEEESCCCHHHHHHHHH
T ss_pred CCCCEEEEeCCCC-CCcH------HHHHHHHHhCcCcCCCeEEEEECCCChHHHHHHHH
Confidence 5799999986443 2222 24666676531235789988877766666666654
No 221
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=22.52 E-value=1.5e+02 Score=25.29 Aligned_cols=54 Identities=9% Similarity=0.177 Sum_probs=34.9
Q ss_pred HHHHHHHHHh-cCCCEEEEec----cCC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccH
Q 030509 63 AEDFRSLISE-FNLEGFIVGY----PFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTS 123 (176)
Q Consensus 63 ~~~L~~li~e-~~~~~iVVGl----Pl~-dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT 123 (176)
++.|.+.+++ .++..|++.- |-| .|+..+ ++++++..++. .+++ ++++||-+.+
T Consensus 164 ~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i~d----l~~i~~la~~~--~~g~-~livD~a~~~ 223 (427)
T 3i16_A 164 LEEIEKVLKEDESITLVHIQRSTGYGWRRALLIED----IKSIVDCVKNI--RKDI-ICFVDNCYGE 223 (427)
T ss_dssp HHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHHH----HHHHHHHHHHH--CTTS-EEEEECTTTT
T ss_pred HHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccHHH----HHHHHHHHHHh--CCCC-EEEEECCCcc
Confidence 5788888875 5788999988 888 887654 33344433330 0144 4558887754
No 222
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=22.39 E-value=1.6e+02 Score=18.90 Aligned_cols=59 Identities=2% Similarity=-0.056 Sum_probs=36.3
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhc
Q 030509 64 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLN 131 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~ 131 (176)
.+..+.+.+..++.+++.+-+. |..+ .++++.|++. .+.+||+++-..-+...+.+.+.
T Consensus 37 ~~a~~~~~~~~~dlvl~D~~l~-~~~g------~~~~~~l~~~--~~~~~ii~~s~~~~~~~~~~~~~ 95 (124)
T 1srr_A 37 LQALDIVTKERPDLVLLDMKIP-GMDG------IEILKRMKVI--DENIRVIIMTAYGELDMIQESKE 95 (124)
T ss_dssp HHHHHHHHHHCCSEEEEESCCT-TCCH------HHHHHHHHHH--CTTCEEEEEESSCCHHHHHHHHH
T ss_pred HHHHHHHhccCCCEEEEecCCC-CCCH------HHHHHHHHHh--CCCCCEEEEEccCchHHHHHHHh
Confidence 3444556677899999996554 2222 2455666653 35789988866655555555443
No 223
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=22.32 E-value=2.7e+02 Score=21.37 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=26.2
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcc
Q 030509 64 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGF 121 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~ 121 (176)
..+.+.+.+.++++||+- |.. .+. ...+.+.+. ++|++++|...
T Consensus 73 ~~~~~~l~~~~vdgiIi~-~~~---~~~------~~~~~l~~~----~iPvV~i~~~~ 116 (305)
T 3huu_A 73 HEVKTMIQSKSVDGFILL-YSL---KDD------PIEHLLNEF----KVPYLIVGKSL 116 (305)
T ss_dssp HHHHHHHHTTCCSEEEES-SCB---TTC------HHHHHHHHT----TCCEEEESCCC
T ss_pred HHHHHHHHhCCCCEEEEe-CCc---CCc------HHHHHHHHc----CCCEEEECCCC
Confidence 556667777899999985 322 111 123445442 67787777543
No 224
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=22.29 E-value=1.2e+02 Score=24.93 Aligned_cols=52 Identities=10% Similarity=0.080 Sum_probs=35.2
Q ss_pred HHHHHHHHHhc---CCCEEEEeccCC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccH
Q 030509 63 AEDFRSLISEF---NLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTS 123 (176)
Q Consensus 63 ~~~L~~li~e~---~~~~iVVGlPl~-dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT 123 (176)
.+.|.+.+++. ++..|++--|.| .|..-+ . +++++..++. ++ ++.+||-++.
T Consensus 180 ~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~-l---~~l~~l~~~~----g~-~li~Dea~~~ 235 (427)
T 2w8t_A 180 VEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAP-L---KEMVAVAKKH----GA-MVLVDEAHSM 235 (427)
T ss_dssp HHHHHHHHHTSCSSSCEEEEEESEETTTTEECC-H---HHHHHHHHHT----TC-EEEEECTTTT
T ss_pred HHHHHHHHHhccCCCCeEEEEcCCCCCCCCccC-H---HHHHHHHHHc----CC-EEEEECCccc
Confidence 57788888775 678899988888 887766 2 3344434432 43 5677888764
No 225
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=22.23 E-value=1.3e+02 Score=22.02 Aligned_cols=37 Identities=27% Similarity=0.228 Sum_probs=25.3
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHh
Q 030509 64 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSA 105 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~ 105 (176)
.++.+.+. +.|.||+|-|..+++.+.. .+.|.+++..
T Consensus 64 ~~~~~~l~--~aD~ii~~sP~y~~~~p~~---lK~~iD~~~~ 100 (193)
T 1rtt_A 64 ERFREQIR--AADALLFATPEYNYSMAGV---LKNAIDWASR 100 (193)
T ss_dssp HHHHHHHH--HCSEEEEECCEETTEECHH---HHHHHHHHTC
T ss_pred HHHHHHHH--hCCEEEEEccccccCcCHH---HHHHHHHhcc
Confidence 44444444 5799999999996666553 4568787753
No 226
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=22.13 E-value=2.2e+02 Score=21.61 Aligned_cols=43 Identities=5% Similarity=0.078 Sum_probs=25.0
Q ss_pred HHHHHHHHhcCCCEEEEeccCC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcc
Q 030509 64 EDFRSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGF 121 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVGlPl~-dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~ 121 (176)
+.+..++ ..++++||+. |.+ +.... +.+.+. . ++||+++|...
T Consensus 54 ~~~~~~~-~~~vdgiii~-~~~~~~~~~--------~~~~~~-~----~iPvV~~~~~~ 97 (304)
T 3o1i_D 54 QQLALCT-QWGANAIILG-TVDPHAYEH--------NLKSWV-G----NTPVFATVNQL 97 (304)
T ss_dssp HHHHHHH-HHTCSEEEEC-CSSTTSSTT--------THHHHT-T----TSCEEECSSCC
T ss_pred HHHHHHH-HcCCCEEEEe-CCChhHHHH--------HHHHHc-C----CCCEEEecCCC
Confidence 4444444 4689999987 444 32222 122333 2 78999887665
No 227
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=21.94 E-value=2.6e+02 Score=21.08 Aligned_cols=45 Identities=4% Similarity=0.113 Sum_probs=24.1
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcc
Q 030509 64 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGF 121 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~ 121 (176)
+.+..+ .+.++++||+. |.+ .... ....+.+.+. ++|++++|...
T Consensus 55 ~~~~~l-~~~~vdgiI~~-~~~---~~~~----~~~~~~~~~~----~iPvV~~~~~~ 99 (293)
T 3l6u_A 55 EQILEF-VHLKVDAIFIT-TLD---DVYI----GSAIEEAKKA----GIPVFAIDRMI 99 (293)
T ss_dssp HHHHHH-HHTTCSEEEEE-CSC---TTTT----HHHHHHHHHT----TCCEEEESSCC
T ss_pred HHHHHH-HHcCCCEEEEe-cCC---hHHH----HHHHHHHHHc----CCCEEEecCCC
Confidence 344444 45789999986 333 1111 1233445542 67888777544
No 228
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str}
Probab=21.93 E-value=3e+02 Score=24.05 Aligned_cols=90 Identities=14% Similarity=0.100 Sum_probs=56.9
Q ss_pred CCCeEEEEecCCCeEEEEEecCCCceeccceeee---C-CC-------CCh---h---hHHHHHHHHHHhcCCCEEE-Ee
Q 030509 20 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLL---R-KK-------NTI---D---LMAEDFRSLISEFNLEGFI-VG 81 (176)
Q Consensus 20 ~~~~iLglD~G~kriGvAvsd~~~~~a~Pl~~i~---~-~~-------~~~---~---~~~~~L~~li~e~~~~~iV-VG 81 (176)
...++-+||.|+--+=+-|.+.......++.... + .. -++ + ..+....+++++++++.+. |+
T Consensus 13 ~~~~~AaIDiGSNS~rL~I~~~~~~~~~~~~~~k~~vrLg~gl~~~g~Ls~eai~r~~~~L~~F~~~~~~~~v~~v~~vA 92 (508)
T 3hi0_A 13 GLAPVSVIDIGSNSVRLVVYEGLSRAPAVLFNEKVLCGLGKGLALTGRMHEEGVTRALMALRRFHVLSEQAQAQKLYVLA 92 (508)
T ss_dssp TCCCEEEEEECSSEEEEEEESCSSSSCCEEEEEEEECCTTTTHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred cCCeEEEEEECCccEEEEEEEEcCCCceEEEEEeEEeecccCccccCCcCHHHHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 3467899999999999999987543333332211 0 00 011 1 1345666788889988664 55
Q ss_pred ccCCCCCCc-hHHHHHHHHHHHHHhccCCCCCcEEEec
Q 030509 82 YPFNRQQNA-ADAVQVKLFIDDLSATKKLEDMKYAYWN 118 (176)
Q Consensus 82 lPl~dG~~s-~~~~~v~~Fa~~L~~~~~~~~lpV~~~D 118 (176)
|.. ..+.....|.+++++. .+++|..++
T Consensus 93 ------TsA~R~A~N~~~fl~~i~~~---tG~~ievIs 121 (508)
T 3hi0_A 93 ------TAAAREAENGPDFIREAEAI---LGCEIEVLS 121 (508)
T ss_dssp ------CTHHHHSTTHHHHHHHHHHH---HTSCEEECC
T ss_pred ------eHHHHcCcCHHHHHHHHHHH---HCCCeEEec
Confidence 432 3344457899999874 388998886
No 229
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=21.85 E-value=1.1e+02 Score=22.19 Aligned_cols=28 Identities=11% Similarity=0.247 Sum_probs=21.7
Q ss_pred CCCEEEEeccCCCCCCchHHHHHHHHHHHHH
Q 030509 74 NLEGFIVGYPFNRQQNAADAVQVKLFIDDLS 104 (176)
Q Consensus 74 ~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~ 104 (176)
+.|.||+|-|...++.+.+ .+.|.+++.
T Consensus 86 ~aD~iv~~~P~y~~~~p~~---lK~~iD~~~ 113 (201)
T 1t5b_A 86 AHDVIVIAAPMYNFNIPTQ---LKNYFDLIA 113 (201)
T ss_dssp HCSEEEEECCCBTTBCCHH---HHHHHHHHC
T ss_pred hCCEEEEEeCcccCcCCHH---HHHHHHHhe
Confidence 5899999999996666654 457888875
No 230
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus}
Probab=21.77 E-value=1e+02 Score=25.99 Aligned_cols=130 Identities=15% Similarity=0.023 Sum_probs=62.7
Q ss_pred CCCeEEEEecCCCeEEEEEecCCCceeccceeeeCCCC------ChhhHHH----HHHHHHHhcCCCEEEEeccCCCCCC
Q 030509 20 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKN------TIDLMAE----DFRSLISEFNLEGFIVGYPFNRQQN 89 (176)
Q Consensus 20 ~~~~iLglD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~------~~~~~~~----~L~~li~e~~~~~iVVGlPl~dG~~ 89 (176)
..--++.+|-|...||+--+.......+=-..++.+.. ....++. .+.+.+...++++|||| ++
T Consensus 134 ~~~~~Vv~d~g~A~i~~l~~~~~~~~~~i~~~ipkK~~~~~~e~~~~~f~~~Vae~~~~~~~~~~v~~iila------GP 207 (357)
T 3j15_A 134 ARVMIVVIDDGEADMALVREYGVEILNSIRHNLGGKRYNTDRESEEMKFFHDVAKTMEEVMKRENVEKAIVA------GP 207 (357)
T ss_dssp SCCCEEEECSSCEEEEEEETTEEEEEECCCCCSCSSSSSCCCCHHHHHHHHHHHHHHHHHHHHHTCCCCEEC------CS
T ss_pred CcEEEEEEECCcEEEEEEeCCEEEEEEEEEecCCCCcccchHHHHHHHHHHHHHHHHHHHhcccCCCEEEEE------CC
Confidence 34558889999999998765433222211112222211 1112334 44444555589999999 33
Q ss_pred chHHHHHHHHHHHHHhcc-CCCCCcEEEecCcccHHHHH-HHhccCCCCCCCCCCCCcHHHHHHHHHHHHhhhh
Q 030509 90 AADAVQVKLFIDDLSATK-KLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYKTILDKFAAVGILQEYLDNAN 161 (176)
Q Consensus 90 s~~~~~v~~Fa~~L~~~~-~~~~lpV~~~DEr~TT~~A~-~~l~~~g~~~~~~k~~iD~~AA~iILq~yL~~~~ 161 (176)
+.... .|.+.|.... .. .-.|+.+|=+++...+- +.+....+.. .=......-..-++++|++...
T Consensus 208 g~~k~---~f~~~l~~~~~~l-~~kvv~v~~s~g~~~gl~Evl~~~~v~~--~l~~~k~~~E~~lle~f~~~l~ 275 (357)
T 3j15_A 208 GFVKE---DFYKFLKEKYPEL-AKKVVIEDTSVTGRTGIYEVIKRGVVDR--VYQENRVAKEVQLVEKVLENIA 275 (357)
T ss_dssp TTHHH---HHHHHHHHHSCCS-SCEECCCCCSCCHHHHHHHHHHTCTHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHH---HHHHHHHHhhHHh-hCeEEEEeCCCCchhhHHHHHhChhHHH--HHHHHHHHHHHHHHHHHHHHHh
Confidence 33333 4555565421 11 22455666555554332 2232110000 0001122234558889987754
No 231
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=21.75 E-value=1.7e+02 Score=18.91 Aligned_cols=59 Identities=5% Similarity=-0.011 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhc
Q 030509 64 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLN 131 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~ 131 (176)
.+..+.+.+..++.+++.+-+. +..+ .++.+.|++. .+.+||+++-..-+...+.+.+.
T Consensus 37 ~~~~~~~~~~~~dlvi~D~~l~-~~~g------~~~~~~l~~~--~~~~~ii~~s~~~~~~~~~~~~~ 95 (126)
T 1dbw_A 37 EAFLAFAPDVRNGVLVTDLRMP-DMSG------VELLRNLGDL--KINIPSIVITGHGDVPMAVEAMK 95 (126)
T ss_dssp HHHHHHGGGCCSEEEEEECCST-TSCH------HHHHHHHHHT--TCCCCEEEEECTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEECCCC-CCCH------HHHHHHHHhc--CCCCCEEEEECCCCHHHHHHHHH
Confidence 4455566778899999986443 2222 2456667653 35789988876666666655554
No 232
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=21.71 E-value=63 Score=21.66 Aligned_cols=60 Identities=8% Similarity=0.013 Sum_probs=39.5
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCC-CCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhc
Q 030509 64 EDFRSLISEFNLEGFIVGYPFNRQ-QNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLN 131 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVGlPl~dG-~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~ 131 (176)
++..+.+.+..++.|++.+-+.++ ..+ .++++.|++. .+.+||+++-..-+...+.+.+.
T Consensus 40 ~~a~~~l~~~~~dlvi~D~~l~~~~~~g------~~~~~~l~~~--~~~~~ii~~s~~~~~~~~~~~~~ 100 (136)
T 3kto_A 40 ESFMRQQISDDAIGMIIEAHLEDKKDSG------IELLETLVKR--GFHLPTIVMASSSDIPTAVRAMR 100 (136)
T ss_dssp HHHTTSCCCTTEEEEEEETTGGGBTTHH------HHHHHHHHHT--TCCCCEEEEESSCCHHHHHHHHH
T ss_pred HHHHHHHhccCCCEEEEeCcCCCCCccH------HHHHHHHHhC--CCCCCEEEEEcCCCHHHHHHHHH
Confidence 444556677789999998644421 222 3577777764 46899998887777766666553
No 233
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=21.64 E-value=1e+02 Score=22.88 Aligned_cols=48 Identities=21% Similarity=0.245 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEe
Q 030509 64 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYW 117 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~ 117 (176)
..+.+-+. +.|.||+|-|..+|+.... .+.|.+++... .+.+-|+.++
T Consensus 61 ~~~~~~i~--~aD~ii~~sP~y~~~~p~~---lK~~ld~l~~~-~~~gK~~~~~ 108 (197)
T 2vzf_A 61 KEAVDATC--NADGLIVATPIYKASYTGL---LKAFLDILPQF-ALAGKAALPL 108 (197)
T ss_dssp HHHHHHHH--HCSEEEEEEECBTTBCCHH---HHHHHTTSCTT-TTTTCEEEEE
T ss_pred HHHHHHHH--HCCEEEEEeCccCCCCCHH---HHHHHHhcccc-ccCCCEEEEE
Confidence 44444343 5899999999986666654 45677766432 2335565443
No 234
>1tjn_A Sirohydrochlorin cobaltochelatase; AF0721, APC5049, midwest consortium for structural genomics, structure initiative, A. fulgidus; 2.01A {Archaeoglobus fulgidus} SCOP: c.92.1.3
Probab=21.63 E-value=1.9e+02 Score=20.93 Aligned_cols=50 Identities=10% Similarity=-0.064 Sum_probs=30.8
Q ss_pred CCEEEEeccCCCCCCch-HHHHHHHHHHHHHhccCCCCCcE--EEec--CcccHHHHHHHh
Q 030509 75 LEGFIVGYPFNRQQNAA-DAVQVKLFIDDLSATKKLEDMKY--AYWN--EGFTSKGVELLL 130 (176)
Q Consensus 75 ~~~iVVGlPl~dG~~s~-~~~~v~~Fa~~L~~~~~~~~lpV--~~~D--Er~TT~~A~~~l 130 (176)
...|+|| .||..+ ....+.++++.|++. .+..+| -|++ ..-|-.++-+.|
T Consensus 25 ~avlLv~----HGS~~p~~~~~~~~la~~l~~~--~~~~~V~~afle~~~~Psl~~~l~~l 79 (156)
T 1tjn_A 25 RGLVIVG----HGSQLNHYREVMELHRKRIEES--GAFDEVKIAFAARKRRPMPDEAIREM 79 (156)
T ss_dssp EEEEEEE----CCTTSTTHHHHHHHHHHHHHHH--TSSSEEEEEECSSSCSSCHHHHHHHC
T ss_pred cCEEEEE----CCCCCHHHHHHHHHHHHHHHhh--CCCCeEEEEEecCCCCCCHHHHHHHc
Confidence 4567788 888764 444678888888764 223344 4555 555556665555
No 235
>1luc_A Bacterial luciferase; monooxygenase, flavoprotein; 1.50A {Vibrio harveyi} SCOP: c.1.16.1 PDB: 1brl_A 3fgc_A*
Probab=21.47 E-value=1.2e+02 Score=24.68 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=31.3
Q ss_pred ChhhHHHHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHH
Q 030509 58 TIDLMAEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLS 104 (176)
Q Consensus 58 ~~~~~~~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~ 104 (176)
+++.+.++|.++.++..++.|++..|.. +......+.++.|++.+-
T Consensus 303 tpe~va~~l~~~~~~~G~d~~~l~~~~~-~~~~~~~~~l~~~a~~V~ 348 (355)
T 1luc_A 303 TPEECIAIIQQDIDATGIDNICCGFEAN-GSEEEIIASMKLFQSDVM 348 (355)
T ss_dssp SHHHHHHHHHHHHHHHCCCEEEEECGGG-CSHHHHHHHHHHHHHHTG
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEEecCC-CCHHHHHHHHHHHHHHhh
Confidence 4567788899988888999999986543 122334556667776553
No 236
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=21.46 E-value=2e+02 Score=22.90 Aligned_cols=51 Identities=14% Similarity=0.047 Sum_probs=34.0
Q ss_pred HHHHHHHHHhcCCCEEEEeccCC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCccc
Q 030509 63 AEDFRSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFT 122 (176)
Q Consensus 63 ~~~L~~li~e~~~~~iVVGlPl~-dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~T 122 (176)
.+.|.+.++++++..|++--|-| .|..-+. +.+.++++ . . + -.+.+||-++
T Consensus 153 ~~~l~~~i~~~~~~~v~~~~~~nptG~~~~~-~~l~~l~~---~---~-~-~~li~De~~~ 204 (369)
T 3cq5_A 153 MDVALEEIRAKQPDIVFVTTPNNPTGDVTSL-DDVERIIN---V---A-P-GIVIVDEAYA 204 (369)
T ss_dssp HHHHHHHHHHHCCSEEEEESSCTTTCCCCCH-HHHHHHHH---H---C-S-SEEEEECTTG
T ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCCCCCH-HHHHHHHH---h---C-C-CEEEEECCch
Confidence 57788888776899999988888 8876653 33333322 2 1 3 3567898875
No 237
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=21.31 E-value=1.8e+02 Score=18.92 Aligned_cols=87 Identities=6% Similarity=-0.045 Sum_probs=45.3
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhccCCCCCCCCCCC
Q 030509 64 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 143 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~~~~~~k~~ 143 (176)
++..+.+.+..++.|++.+-+. +..+ .++++.|++....+++||+++-...+... .. ....|...--. ++
T Consensus 37 ~~a~~~l~~~~~dlvi~d~~l~-~~~g------~~~~~~l~~~~~~~~~pii~~s~~~~~~~-~~-~~~~g~~~~l~-KP 106 (133)
T 3nhm_A 37 ASGLQQALAHPPDVLISDVNMD-GMDG------YALCGHFRSEPTLKHIPVIFVSGYAPRTE-GP-ADQPVPDAYLV-KP 106 (133)
T ss_dssp HHHHHHHHHSCCSEEEECSSCS-SSCH------HHHHHHHHHSTTTTTCCEEEEESCCC-------TTSCCCSEEEE-SS
T ss_pred HHHHHHHhcCCCCEEEEeCCCC-CCCH------HHHHHHHHhCCccCCCCEEEEeCCCcHhH-HH-HhhcCCceEEe-cc
Confidence 4555667778999999997554 2222 35666776632235789988876655444 33 33344432111 23
Q ss_pred CcHHHHHHHHHHHHhhh
Q 030509 144 LDKFAAVGILQEYLDNA 160 (176)
Q Consensus 144 iD~~AA~iILq~yL~~~ 160 (176)
++.-.=.-.++..|...
T Consensus 107 ~~~~~l~~~i~~~l~~~ 123 (133)
T 3nhm_A 107 VKPPVLIAQLHALLARA 123 (133)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhh
Confidence 44333333445555443
No 238
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=21.21 E-value=2e+02 Score=20.29 Aligned_cols=47 Identities=15% Similarity=0.129 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEE
Q 030509 63 AEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYA 115 (176)
Q Consensus 63 ~~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~ 115 (176)
.+++.+.+.+++++.|++- .+.+.....++++++.|++.+ ..+++|+
T Consensus 43 ~e~~v~~a~~~~~d~v~lS-----~~~~~~~~~~~~~i~~l~~~g-~~~i~v~ 89 (137)
T 1ccw_A 43 QELFIKAAIETKADAILVS-----SLYGQGEIDCKGLRQKCDEAG-LEGILLY 89 (137)
T ss_dssp HHHHHHHHHHHTCSEEEEE-----ECSSTHHHHHTTHHHHHHHTT-CTTCEEE
T ss_pred HHHHHHHHHhcCCCEEEEE-----ecCcCcHHHHHHHHHHHHhcC-CCCCEEE
Confidence 4788999999999977775 445555667788899998752 2256664
No 239
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=21.14 E-value=1.6e+02 Score=22.70 Aligned_cols=51 Identities=4% Similarity=-0.167 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCCCEEEEeccCC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCccc
Q 030509 63 AEDFRSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFT 122 (176)
Q Consensus 63 ~~~L~~li~e~~~~~iVVGlPl~-dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~T 122 (176)
.+.|.+.++++++..|++-.|-| .|..-+. +. +++..++. ++ .+.+||-++
T Consensus 113 ~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~-~~---i~~l~~~~----~~-~li~D~a~~ 164 (353)
T 2yrr_A 113 PEAVARALKRRRYRMVALVHGETSTGVLNPA-EA---IGALAKEA----GA-LFFLDAVTT 164 (353)
T ss_dssp HHHHHHHHHHSCCSEEEEESEETTTTEECCH-HH---HHHHHHHH----TC-EEEEECTTT
T ss_pred HHHHHHHHHhCCCCEEEEEccCCCcceecCH-HH---HHHHHHHc----CC-eEEEEcCcc
Confidence 57788888766788999988888 8876652 23 33333332 43 456788764
No 240
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=21.13 E-value=2.1e+02 Score=23.26 Aligned_cols=61 Identities=10% Similarity=0.207 Sum_probs=38.6
Q ss_pred HHHHHHHHhcCCCEEEEeccCC-CCCCchHHHHHHHHHHHHHhccCCCC-CcEEEecC------cccHHHHHHHhc
Q 030509 64 EDFRSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLED-MKYAYWNE------GFTSKGVELLLN 131 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVGlPl~-dG~~s~~~~~v~~Fa~~L~~~~~~~~-lpV~~~DE------r~TT~~A~~~l~ 131 (176)
-++.+..++..++++++--|.. ..+. ...++.| +.+.+. . + +||+++|= .+|.....++..
T Consensus 96 i~la~~A~~~Gadavlv~~P~y~~~s~---~~l~~~f-~~va~a--~-~~lPiilYn~P~~tg~~l~~~~~~~La~ 164 (303)
T 2wkj_A 96 QQLAASAKRYGFDAVSAVTPFYYPFSF---EEHCDHY-RAIIDS--A-DGLPMVVYNIPALSGVKLTLDQINTLVT 164 (303)
T ss_dssp HHHHHHHHHHTCSEEEEECCCSSCCCH---HHHHHHH-HHHHHH--H-TTCCEEEEECHHHHCCCCCHHHHHHHHT
T ss_pred HHHHHHHHhCCCCEEEecCCCCCCCCH---HHHHHHH-HHHHHh--C-CCCCEEEEeCccccCCCCCHHHHHHHhc
Confidence 4566667888999999999987 5432 2333334 445442 2 5 99999883 356565555543
No 241
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=21.12 E-value=1.6e+02 Score=23.34 Aligned_cols=41 Identities=5% Similarity=0.127 Sum_probs=29.0
Q ss_pred HHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEE
Q 030509 67 RSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAY 116 (176)
Q Consensus 67 ~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~ 116 (176)
.+.+.+...|.|.||. +.+-..+.+.++.+++++ +++|+++
T Consensus 26 ~~~l~~~GaD~IelG~-----S~g~t~~~~~~~v~~ir~----~~~Pivl 66 (234)
T 2f6u_A 26 IKAVADSGTDAVMISG-----TQNVTYEKARTLIEKVSQ----YGLPIVV 66 (234)
T ss_dssp HHHHHTTTCSEEEECC-----CTTCCHHHHHHHHHHHTT----SCCCEEE
T ss_pred HHHHHHcCCCEEEECC-----CCCCCHHHHHHHHHHhcC----CCCCEEE
Confidence 3445667899999994 444456677788888875 2788776
No 242
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}
Probab=20.91 E-value=3.8e+02 Score=22.57 Aligned_cols=128 Identities=7% Similarity=0.036 Sum_probs=66.6
Q ss_pred CeEEEEecCCCeEEEEEecCCCceeccceeeeCCC-CChhhHH----HHHHHHHHhcCCCEEEEeccCCCCCCchHHHHH
Q 030509 22 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKK-NTIDLMA----EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQV 96 (176)
Q Consensus 22 ~~iLglD~G~kriGvAvsd~~~~~a~Pl~~i~~~~-~~~~~~~----~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v 96 (176)
.-++.+|-|...||+--+.....++.=-..+|.+. .....++ +.+.+.+...++++|||| +.+...
T Consensus 148 ~~~vv~d~g~A~i~~l~~~~~~~~~~i~~~iPkK~~~~~~~f~~~V~e~~~~~~~~~~v~~iIla------GPg~~K--- 218 (364)
T 3obw_A 148 IIIALVDFDEYLIAIPFEQGIKILSEKSLRPLNEEEGIIEQNALEIATELAEYVKQYDPDAILLA------GPGFFK--- 218 (364)
T ss_dssp EEEEEEETTEEEEEEECSSCEECCCEEECGGGCSSTTHHHHHHHHHHHHHHHHHHHHCCSEEEEE------CSSSHH---
T ss_pred EEEEEEECCcEEEEEEeCCEEEEEEEEEeeCccchhHHHHHHHHHHHHHHHHHhccccCCEEEEE------CChHHH---
Confidence 44678999999998877654333321111223221 1112333 445555555689999999 333322
Q ss_pred HHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhccCCCCCCCCCCCCcHHHHHHHHHHHHhhhh
Q 030509 97 KLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTILDKFAAVGILQEYLDNAN 161 (176)
Q Consensus 97 ~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~~~~~~k~~iD~~AA~iILq~yL~~~~ 161 (176)
..|.+.|.+. .....+..+|=+++...+-+.+...+... ..=.........-++++|++...
T Consensus 219 ~~f~~~l~~~--~~~~~i~~vd~s~g~~~gl~Evl~~~~v~-~~l~~~k~~~E~~lle~f~~~l~ 280 (364)
T 3obw_A 219 EEVSKKVNAI--LKNKKIYIDSVSSATRAGLHEVLKRDIID-KIMTDYEIAIGAKKMEKAMELLA 280 (364)
T ss_dssp HHHHHHHHTT--TCCSEEEEECCSCSSHHHHHHHHTSHHHH-HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH--hhcCeEEEEeCCCCchHhHHHHHhchHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566677653 33445677886766655433322111000 00011223344568888887654
No 243
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=20.87 E-value=61 Score=22.58 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=18.6
Q ss_pred HHHHHHH-HHhcCCCEEEEecc
Q 030509 63 AEDFRSL-ISEFNLEGFIVGYP 83 (176)
Q Consensus 63 ~~~L~~l-i~e~~~~~iVVGlP 83 (176)
.+.|.+. +++++++.||+|-.
T Consensus 107 ~~~I~~~~a~~~~~DlIV~G~~ 128 (156)
T 3fg9_A 107 DDVILEQVIPEFKPDLLVTGAD 128 (156)
T ss_dssp HHHHHHTHHHHHCCSEEEEETT
T ss_pred HHHHHHHHHHhcCCCEEEECCC
Confidence 5889998 89999999999954
No 244
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=20.72 E-value=1.8e+02 Score=18.79 Aligned_cols=60 Identities=7% Similarity=0.008 Sum_probs=35.8
Q ss_pred HHHHHHHHhc-CCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhc
Q 030509 64 EDFRSLISEF-NLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLN 131 (176)
Q Consensus 64 ~~L~~li~e~-~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~ 131 (176)
++..+.+.+. .++.+++.+-+.++..+ .++++.|.+. .+.+||+++-..-+...+.+.+.
T Consensus 39 ~~a~~~l~~~~~~dlvi~d~~l~~~~~g------~~~~~~l~~~--~~~~~ii~~s~~~~~~~~~~~~~ 99 (132)
T 2rdm_A 39 AKAIEMLKSGAAIDGVVTDIRFCQPPDG------WQVARVAREI--DPNMPIVYISGHAALEWASNGVP 99 (132)
T ss_dssp HHHHHHHHTTCCCCEEEEESCCSSSSCH------HHHHHHHHHH--CTTCCEEEEESSCCTTHHHHSCT
T ss_pred HHHHHHHHcCCCCCEEEEeeeCCCCCCH------HHHHHHHHhc--CCCCCEEEEeCCccHHHHHhhcC
Confidence 4455666666 89999999654421222 2456666653 35789888765555544444443
No 245
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=20.71 E-value=2.4e+02 Score=21.69 Aligned_cols=50 Identities=6% Similarity=0.011 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCCchHHH-HHHHHHHHHHhccCCCCCcEEEecC
Q 030509 63 AEDFRSLISEFNLEGFIVGYPFNRQQNAADAV-QVKLFIDDLSATKKLEDMKYAYWNE 119 (176)
Q Consensus 63 ~~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~-~v~~Fa~~L~~~~~~~~lpV~~~DE 119 (176)
.+.|.+.+++++++.||+| ....+...+ ..-..++.+-.. ..+||..+-.
T Consensus 240 ~~~I~~~a~~~~~dLlV~G----~~~~~~~~~~~~Gs~~~~vl~~---~~~pvLvv~~ 290 (294)
T 3loq_A 240 HKAILAKREEINATTIFMG----SRGAGSVMTMILGSTSESVIRR---SPVPVFVCKR 290 (294)
T ss_dssp HHHHHHHHHHTTCSEEEEE----CCCCSCHHHHHHHCHHHHHHHH---CSSCEEEECS
T ss_pred HHHHHHHHHhcCcCEEEEe----CCCCCCccceeeCcHHHHHHhc---CCCCEEEECC
Confidence 5888999999999999999 332332222 223345555542 2688887643
No 246
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=20.69 E-value=2.5e+02 Score=21.26 Aligned_cols=58 Identities=9% Similarity=-0.097 Sum_probs=38.5
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhc
Q 030509 64 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLN 131 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~ 131 (176)
.+..+.+.+..++.|++.+-+. +. ...++++.|.+ .+++||+++-..-+...+.+.+.
T Consensus 71 ~~al~~~~~~~~DlvllD~~lp-~~------~G~~l~~~lr~---~~~~~iI~lt~~~~~~~~~~a~~ 128 (249)
T 3q9s_A 71 MNGLIKAREDHPDLILLDLGLP-DF------DGGDVVQRLRK---NSALPIIVLTARDTVEEKVRLLG 128 (249)
T ss_dssp HHHHHHHHHSCCSEEEEECCSC-HH------HHHHHHHHHHT---TCCCCEEEEESCCSHHHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEcCCCC-CC------CHHHHHHHHHc---CCCCCEEEEECCCCHHHHHHHHH
Confidence 4455667778999999996544 11 11356677765 25789998877776666666554
No 247
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=20.68 E-value=1.8e+02 Score=18.76 Aligned_cols=51 Identities=10% Similarity=0.066 Sum_probs=32.3
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcc
Q 030509 64 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGF 121 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~ 121 (176)
++..+.+.+..++.|++.+-+. +..+ .++++.|++....+.+||+++-..-
T Consensus 37 ~~a~~~l~~~~~dlii~D~~l~-~~~g------~~~~~~l~~~~~~~~~~ii~~s~~~ 87 (127)
T 3i42_A 37 TDALHAMSTRGYDAVFIDLNLP-DTSG------LALVKQLRALPMEKTSKFVAVSGFA 87 (127)
T ss_dssp HHHHHHHHHSCCSEEEEESBCS-SSBH------HHHHHHHHHSCCSSCCEEEEEECC-
T ss_pred HHHHHHHHhcCCCEEEEeCCCC-CCCH------HHHHHHHHhhhccCCCCEEEEECCc
Confidence 4556667788999999997665 2222 3566777663113578988775433
No 248
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=20.67 E-value=1.8e+02 Score=22.74 Aligned_cols=35 Identities=14% Similarity=0.156 Sum_probs=20.0
Q ss_pred CEEEEeccCCCCCCchHH-HHHHHHHHHHHhccCCCCCcEEE
Q 030509 76 EGFIVGYPFNRQQNAADA-VQVKLFIDDLSATKKLEDMKYAY 116 (176)
Q Consensus 76 ~~iVVGlPl~dG~~s~~~-~~v~~Fa~~L~~~~~~~~lpV~~ 116 (176)
..++|+ .||..+.+ +.+.++++.+++. +++.||.+
T Consensus 11 aillv~----hGS~~~~~~~~~~~~~~~l~~~--~~~~~V~~ 46 (269)
T 2xvy_A 11 GILLVA----FGTSVEEARPALDKMGDRVRAA--HPDIPVRW 46 (269)
T ss_dssp EEEEEE----CCCCCTTTTHHHHHHHHHHHHH--CTTSCEEE
T ss_pred eEEEEe----CCCCcHHHHHHHHHHHHHHHHH--CCCCeEEe
Confidence 346666 66655543 3456667777653 45566543
No 249
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=20.51 E-value=1.8e+02 Score=23.81 Aligned_cols=55 Identities=13% Similarity=0.197 Sum_probs=36.3
Q ss_pred HHHHHHHHHhc-----CCCEEEEeccCC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccH
Q 030509 63 AEDFRSLISEF-----NLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTS 123 (176)
Q Consensus 63 ~~~L~~li~e~-----~~~~iVVGlPl~-dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT 123 (176)
.+.|.+.++++ ++..|++--|-| .|..-+.. ..++.++..++. ++ .+++||-++.
T Consensus 175 ~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~-~l~~l~~~~~~~----~~-~li~Dea~~~ 235 (435)
T 3piu_A 175 ETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRN-ELYLLLSFVEDK----GI-HLISDEIYSG 235 (435)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHH-HHHHHHHHHHHH----TC-EEEEECTTGG
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHH-HHHHHHHHHHHc----CC-EEEEeccccc
Confidence 57788877763 678899999988 88764432 355555555542 43 5667887653
No 250
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=20.48 E-value=2.5e+02 Score=20.42 Aligned_cols=105 Identities=10% Similarity=0.050 Sum_probs=60.6
Q ss_pred ccceeeeCCCCChhhHHHHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHH
Q 030509 47 SPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGV 126 (176)
Q Consensus 47 ~Pl~~i~~~~~~~~~~~~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A 126 (176)
..+.++.-....+ .+++.+.+.+++++.|.+- .+.+.....++++++.|++.+ .++++|+.=- ...+.+.
T Consensus 45 ~G~eVi~lG~~~p---~e~lv~aa~~~~~diV~lS-----~~~~~~~~~~~~~i~~L~~~g-~~~i~v~vGG-~~~~~~~ 114 (161)
T 2yxb_A 45 AGFEVVYTGLRQT---PEQVAMAAVQEDVDVIGVS-----ILNGAHLHLMKRLMAKLRELG-ADDIPVVLGG-TIPIPDL 114 (161)
T ss_dssp TTCEEECCCSBCC---HHHHHHHHHHTTCSEEEEE-----ESSSCHHHHHHHHHHHHHHTT-CTTSCEEEEE-CCCHHHH
T ss_pred CCCEEEECCCCCC---HHHHHHHHHhcCCCEEEEE-----eechhhHHHHHHHHHHHHhcC-CCCCEEEEeC-CCchhcH
Confidence 4455654322221 4788999999999977665 344455677788889998742 2356766544 3444332
Q ss_pred HHHhccCCCCCCCCCCCCcHHHHHHHHHHHHhhhhhh
Q 030509 127 ELLLNPLDLHPVEYKTILDKFAAVGILQEYLDNANRK 163 (176)
Q Consensus 127 ~~~l~~~g~~~~~~k~~iD~~AA~iILq~yL~~~~~~ 163 (176)
..+.+.|...---. .-+...|+-.+.+++......
T Consensus 115 -~~l~~~G~d~v~~~-~~~~~~~~~~~~~~~~~~~~~ 149 (161)
T 2yxb_A 115 -EPLRSLGIREIFLP-GTSLGEIIEKVRKLAEEKRMR 149 (161)
T ss_dssp -HHHHHTTCCEEECT-TCCHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHCCCcEEECC-CCCHHHHHHHHHHHHHHhhcc
Confidence 23444555320101 113345677888888776544
No 251
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic effects, aldose-ketose isomerase multiple conformers, isomerase; HET: 16G TLA; 1.73A {Escherichia coli} SCOP: c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A 1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A
Probab=20.29 E-value=1.7e+02 Score=22.97 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=26.7
Q ss_pred HHHHHHHHHhcC---CCEEEEeccCCCCCCchHHHHHHHHHHHHHhc-cCCCCCcEEEecCcc
Q 030509 63 AEDFRSLISEFN---LEGFIVGYPFNRQQNAADAVQVKLFIDDLSAT-KKLEDMKYAYWNEGF 121 (176)
Q Consensus 63 ~~~L~~li~e~~---~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~-~~~~~lpV~~~DEr~ 121 (176)
.+.|.+.+++.. =...+||+ .|..++ ....+.+++...+. ..+.++-+++.|||+
T Consensus 17 A~~l~~~l~~~~~~~~~~~~i~l---sgGsTp-~~~~~~L~~~~~~~~~~~~~v~v~~ldEr~ 75 (266)
T 1fs5_A 17 ARHIVNRINAFKPTADRPFVLGL---PTGGTP-MTTYKALVEMHKAGQVSFKHVVTFNMDEYV 75 (266)
T ss_dssp HHHHHHHHHHHCCCSSSCEEEEE---CCSSTT-HHHHHHHHHHHHTTSCCCTTEEEEESEEES
T ss_pred HHHHHHHHHHhhhcccCceEEEE---cCCCCH-HHHHHHHHHHhhcCCCChHHeEEEeCeecc
Confidence 455666666521 12466775 233333 12223333321111 124577788889987
No 252
>4gmk_A Ribose-5-phosphate isomerase A; D-ribose-5-phosphate isomerase family, ribose 5-phosphate isomerisation; 1.72A {Lactobacillus salivarius}
Probab=20.29 E-value=2.2e+02 Score=22.67 Aligned_cols=54 Identities=17% Similarity=0.138 Sum_probs=36.0
Q ss_pred hcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhccCCCC
Q 030509 72 EFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH 136 (176)
Q Consensus 72 e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~~ 136 (176)
+|=-++.|||+ ||-|.....++..++++++. ++.|.-+ -||.+....+.+.|+.
T Consensus 17 ~~V~~gmvvGl----GTGSTv~~~i~~L~~~~~~~----~l~i~~V---~tS~~t~~~a~~~Gi~ 70 (228)
T 4gmk_A 17 EWIKDGMIVGL----GTGSTVKYMVDALGKRVNEE----GLDIVGV---TTSIRTAEQAKSLGIV 70 (228)
T ss_dssp GGCCTTCEEEE----CCSHHHHHHHHHHHHHHHHH----CCCCEEE---ESSHHHHHHHHHTTCC
T ss_pred HhCCCCCEEEE----CchHHHHHHHHHHHHHHhhc----CCcEEEE---eCcHHHHHHHHHcCCc
Confidence 34456789994 99888888888888887653 4555555 3555555566666653
No 253
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=20.28 E-value=1.3e+02 Score=22.30 Aligned_cols=28 Identities=11% Similarity=0.347 Sum_probs=21.7
Q ss_pred CCCEEEEeccCCCCCCchHHHHHHHHHHHHH
Q 030509 74 NLEGFIVGYPFNRQQNAADAVQVKLFIDDLS 104 (176)
Q Consensus 74 ~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~ 104 (176)
+.|.||+|-|..+++.+.+ .+.|.+++.
T Consensus 94 ~aD~iv~~~P~y~~~~pa~---lK~~iD~~~ 121 (208)
T 2hpv_A 94 SADKVVIANPMWNLNVPTR---LKAWVDTIN 121 (208)
T ss_dssp HCSEEEEEEECBTTBCCHH---HHHHHHHHC
T ss_pred hCCEEEEEeccccCCCCHH---HHHHHHHHh
Confidence 5899999999996666654 456777775
No 254
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=20.25 E-value=2e+02 Score=19.11 Aligned_cols=59 Identities=8% Similarity=-0.045 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHHHHHHHhc
Q 030509 64 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLN 131 (176)
Q Consensus 64 ~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~ 131 (176)
.+..+.+.+..++.+++.+-+. +..+ .++++.|++. .+.+||+++-..-+...+.+.+.
T Consensus 38 ~~a~~~l~~~~~dlvllD~~l~-~~~g------~~l~~~l~~~--~~~~~ii~ls~~~~~~~~~~~~~ 96 (137)
T 3cfy_A 38 RDAIQFIERSKPQLIILDLKLP-DMSG------EDVLDWINQN--DIPTSVIIATAHGSVDLAVNLIQ 96 (137)
T ss_dssp HHHHHHHHHHCCSEEEECSBCS-SSBH------HHHHHHHHHT--TCCCEEEEEESSCCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEecCCC-CCCH------HHHHHHHHhc--CCCCCEEEEEecCcHHHHHHHHH
Confidence 4445566778899999987554 2222 2456667653 35789988876666666655554
No 255
>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705}
Probab=20.23 E-value=1.4e+02 Score=24.89 Aligned_cols=89 Identities=20% Similarity=0.340 Sum_probs=53.1
Q ss_pred CCeEEEEecCCCeEEEEEecCC-CceeccceeeeC----C-------CCCh---h---hHHHHHHHHHHhcCCCEE-EEe
Q 030509 21 RGRFLGLDVGDKYVGLSISDPK-NKIASPLSVLLR----K-------KNTI---D---LMAEDFRSLISEFNLEGF-IVG 81 (176)
Q Consensus 21 ~~~iLglD~G~kriGvAvsd~~-~~~a~Pl~~i~~----~-------~~~~---~---~~~~~L~~li~e~~~~~i-VVG 81 (176)
..++-+||.|+--|=+.|.+.. .....++..... . .-++ + ..+....+++++++++.+ +|+
T Consensus 15 ~~~~A~IDiGSNsiRL~I~~~~~~~~~~~i~~~k~~vrLg~g~~~~g~ls~eai~r~~~aL~~f~~~~~~~~v~~v~~vA 94 (343)
T 3cer_A 15 SVTVAGIDCGTNSIRLKIARVDADGMHEVVPRILRVIRLGQDVDKTHRFADEALERAYVAAREFAGVIAEHPIDGLRFVA 94 (343)
T ss_dssp CEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEEECCCTTTTHHHHSSCCHHHHHHHHHHHHHHHHHHTTSCCSEEEEEE
T ss_pred CCeEEEEEcccceeEeEEEEEcCCCCEEEEEEEEEEeeCCCCccccCCcCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 3578899999999999988754 222222221110 0 0011 1 234666777888898854 455
Q ss_pred ccCCCCCCc-hHHHHHHHHHHHHHhccCCCCCcEEEec
Q 030509 82 YPFNRQQNA-ADAVQVKLFIDDLSATKKLEDMKYAYWN 118 (176)
Q Consensus 82 lPl~dG~~s-~~~~~v~~Fa~~L~~~~~~~~lpV~~~D 118 (176)
|.. ..+.....|.+++++. .+++|..++
T Consensus 95 ------TsA~R~A~N~~~fl~~v~~~---tGi~ieVIs 123 (343)
T 3cer_A 95 ------TSATRDAENREEFEDEIERI---LGVRPEVIP 123 (343)
T ss_dssp ------CHHHHHCTTHHHHHHHHHHH---HSSCCEECC
T ss_pred ------cHHHHcCcCHHHHHHHHHHH---HCCCEEEeC
Confidence 322 2233446899999874 278888776
No 256
>3g13_A Putative conjugative transposon recombinase; resolvase, PSI-II, target 11223F, structural genomics, prote structure initiative; 2.00A {Clostridium difficile}
Probab=20.16 E-value=71 Score=23.23 Aligned_cols=55 Identities=4% Similarity=0.002 Sum_probs=36.6
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecCcccHH
Q 030509 63 AEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSK 124 (176)
Q Consensus 63 ~~~L~~li~e~~~~~iVVGlPl~dG~~s~~~~~v~~Fa~~L~~~~~~~~lpV~~~DEr~TT~ 124 (176)
+.++.+.+++.+++.|||=-.-.=|. ....+..+.+.|.+. ++.++.++|.+.|.
T Consensus 64 l~~ll~~~~~g~id~vvv~~ldRl~R---~~~~~~~~~~~l~~~----gv~l~~~~~~~d~~ 118 (169)
T 3g13_A 64 FQRMINDCMNGEIDMVFTKSISRFAR---NTLDTLKYVRMLKER----NIAVYFEDEKINTL 118 (169)
T ss_dssp HHHHHHHHHTTCCSEEEESCHHHHCS---SHHHHHHHHHHHHTT----TCEEEETTTTEETT
T ss_pred HHHHHHHHHcCCCcEEEEEecccccc---ChHHHHHHHHHHHHc----CCEEEEecCCcCCC
Confidence 68888888888999998862211011 233444566667652 89999999987543
No 257
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=20.06 E-value=3.1e+02 Score=21.56 Aligned_cols=52 Identities=8% Similarity=0.126 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCCCEEEEeccCC-CCCCchHHH--------------HHHHHHHHHHhccCCCCCcEEE
Q 030509 63 AEDFRSLISEFNLEGFIVGYPFN-RQQNAADAV--------------QVKLFIDDLSATKKLEDMKYAY 116 (176)
Q Consensus 63 ~~~L~~li~e~~~~~iVVGlPl~-dG~~s~~~~--------------~v~~Fa~~L~~~~~~~~lpV~~ 116 (176)
+.++.+.+.+..+|.|-+|.|+. .--.++..+ .+-+.++.+++. ++++||++
T Consensus 33 ~~~~~~~l~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~--~~~~Pv~l 99 (268)
T 1qop_A 33 SLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREK--HPTIPIGL 99 (268)
T ss_dssp HHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSSSCEEE
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc--CCCCCEEE
Confidence 35556666778899999999997 322333222 233566777653 24789876
Done!