BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030510
(176 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 90.9 bits (224), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 88/183 (48%), Gaps = 9/183 (4%)
Query: 2 DETCWSDKEYCRT---TNNWYCLSKTEAESEALEFAKRTGLDVVTVCPNLIWGPXXXXXX 58
DE+CWSD E+CR T Y +SKT AE A ++AK +D +T+ P L+ GP
Sbjct: 143 DESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGPFIMSSM 202
Query: 59 XXXXXXXIKRLKGYESLENRLR--MIVDVRDVXXXXXXXXXXXXXXGRYICTAHLIRERD 116
+ + G E+ + +R V + D+ GRYIC++H D
Sbjct: 203 PPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAHIYLFENPKAEGRYICSSHDCIILD 262
Query: 117 LFDKLKSLYPNYNYPKNFT---EGREDVTMSSEKLQRLGWSFR-PLEETLIDSIESYKKA 172
L L+ YP YN P F E + V SS+KL LG+ F+ LE+ ++++ +
Sbjct: 263 LAKMLREKYPEYNIPTEFKGVDENLKSVCFSSKKLTDLGFEFKYSLEDMFTGAVDTCRAK 322
Query: 173 GIL 175
G+L
Sbjct: 323 GLL 325
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 85/190 (44%), Gaps = 15/190 (7%)
Query: 1 MDETCWSDKEYCRTTN--NW-YCLSKTEAESEALEFAKRTGLDVVTVCPNLIWGPXXXXX 57
+DE W+D E+ + W Y SKT AE A +FA+ +D++TV P L+ G
Sbjct: 147 VDEKNWTDIEFLTSAKPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSLTSD 206
Query: 58 XXXXXXXXIKRLKGYESLENRLR---------MIVDVRDVXXXXXXXXXXXXXXGRYICT 108
+ + G E L N ++ I V DV GRYIC
Sbjct: 207 VPSSIGLAMSLITGNEFLINGMKGMQMLSGSVSIAHVEDVCRAHIFVAEKESASGRYICC 266
Query: 109 AHLIRERDLFDKLKSLYPNYNYPKNFTE--GREDVTMSSEKLQRLGWSFR-PLEETLIDS 165
A +L L YP Y P +F + + + +SSEKL + G+SF+ +EE +S
Sbjct: 267 AANTSVPELAKFLSKRYPQYKVPTDFGDFPPKSKLIISSEKLVKEGFSFKYGIEEIYDES 326
Query: 166 IESYKKAGIL 175
+E +K G+L
Sbjct: 327 VEYFKAKGLL 336
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 9/184 (4%)
Query: 1 MDETCWSDKEYCRTTNNW---YCLSKTEAESEALEFAKRTGLDVVTVCPNLIWGPXXXXX 57
+DE+ WSD + R+ + Y +SKT AE LEF ++ G+DVVT+ I G
Sbjct: 139 LDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFVCPK 198
Query: 58 XXXXXXXXIKRLKGYESLENRLRM-IVDVRDVXXXXXXXXXXXXXXGRYICTAHLIRERD 116
+ + G + R +V V DV GRY C+ ++ +
Sbjct: 199 LPDSIEKALVLVLGKKEQIGVTRFHMVHVDDVARAHIYLLENSVPGGRYNCSPFIVPIEE 258
Query: 117 LFDKLKSLYPNYNYPK----NFTEGREDVTMSSEKLQRLGWSFR-PLEETLIDSIESYKK 171
+ L + YP Y +G ++++KL G+ F+ +E+ D+I+ K+
Sbjct: 259 MSQLLSAKYPEYQILTVDELKEIKGARLPDLNTKKLVDAGFDFKYTIEDMFDDAIQCCKE 318
Query: 172 AGIL 175
G L
Sbjct: 319 KGYL 322
>pdb|1YB4|A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
pdb|1YB4|B Chain B, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
Length = 295
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 20/45 (44%)
Query: 7 SDKEYCRTTNNWYCLSKTEAESEALEFAKRTGLDVVTVCPNLIWG 51
D + C+ N EA SEAL FA + G D V V L G
Sbjct: 166 GDGQTCKVANQIIVALNIEAVSEALVFASKAGADPVRVRQALXGG 210
>pdb|1TIF|A Chain A, Translation Initiation Factor 3 N-terminal Domain
Length = 78
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 25 EAESEALEFAKRTGLDVVTVCPN 47
+++ EALE A R LD+V V PN
Sbjct: 29 KSKQEALEIAARRNLDLVLVAPN 51
>pdb|2JL1|A Chain A, Structural Insight Into Bioremediation Of Triphenylmethane
Dyes By Citrobacter Sp. Triphenylmethane Reductase
Length = 287
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 118 FDKLKSLYPNYNYPKNFTE---------GREDVTMSSEKLQRLGWSFRPLEETL 162
F++ K+ N P+ FTE + + + +S+ LQ+L S PL+ET+
Sbjct: 228 FEEEKNFLVNAGVPEPFTEITAAIYDAISKGEASKTSDDLQKLIGSLTPLKETV 281
>pdb|2CW8|A Chain A, Crystal Structure Of Intein Homing Endonuclease Ii
Length = 537
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 109 AHLIRERDLFDKLKSLYPNYNYPKNFTEGREDVTMSSEKLQRLGWSFRPLEETLIDSIES 168
+H+I + L + ++ P+ F + ED + EK QRL W + ++D +ES
Sbjct: 448 SHVIPKEVLSEVFGKVFQKNVSPQTFRKXVEDGRLDPEKAQRLSWLIEG--DVVLDRVES 505
>pdb|2CW7|A Chain A, Crystal Structure Of Intein Homing Endonuclease Ii
Length = 537
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 109 AHLIRERDLFDKLKSLYPNYNYPKNFTEGREDVTMSSEKLQRLGWSFRPLEETLIDSIES 168
+H+I + L + ++ P+ F + ED + EK QRL W + ++D +ES
Sbjct: 448 SHVIPKEVLSEVFGKVFQKNVSPQTFRKMVEDGRLDPEKAQRLSWLIEG--DVVLDRVES 505
>pdb|3N29|A Chain A, Crystal Structure Of Carboxynorspermidine Decarboxylase
Complexed With Norspermidine From Campylobacter Jejuni
pdb|3N29|B Chain B, Crystal Structure Of Carboxynorspermidine Decarboxylase
Complexed With Norspermidine From Campylobacter Jejuni
Length = 418
Score = 26.2 bits (56), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 132 KNFTEGREDVTMSSEKLQRLGWSFRPLEETLIDSIESYKKAGILD 176
KNF++ + V + E + +GW L +++D IE+ K+ ILD
Sbjct: 256 KNFSD-KYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILD 299
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,424,063
Number of Sequences: 62578
Number of extensions: 141724
Number of successful extensions: 331
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 320
Number of HSP's gapped (non-prelim): 10
length of query: 176
length of database: 14,973,337
effective HSP length: 92
effective length of query: 84
effective length of database: 9,216,161
effective search space: 774157524
effective search space used: 774157524
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)