Query 030511
Match_columns 176
No_of_seqs 124 out of 1149
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 14:50:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030511.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030511hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05768 DUF836: Glutaredoxin- 99.9 3.6E-21 7.8E-26 137.7 9.3 75 49-132 1-81 (81)
2 PRK10329 glutaredoxin-like pro 99.6 1.1E-14 2.4E-19 104.9 9.4 71 48-133 1-75 (81)
3 TIGR02194 GlrX_NrdH Glutaredox 99.6 4.7E-15 1E-19 102.8 7.1 67 50-130 1-71 (72)
4 TIGR02190 GlrX-dom Glutaredoxi 99.5 5.8E-14 1.3E-18 99.3 8.8 72 43-131 3-78 (79)
5 TIGR02189 GlrX-like_plant Glut 99.5 3.8E-14 8.3E-19 105.3 8.1 79 46-141 6-92 (99)
6 PRK11200 grxA glutaredoxin 1; 99.5 8.1E-14 1.7E-18 99.3 9.3 74 48-133 1-81 (85)
7 TIGR02181 GRX_bact Glutaredoxi 99.5 1.4E-13 3E-18 96.1 7.9 73 50-139 1-78 (79)
8 PRK10638 glutaredoxin 3; Provi 99.5 2.7E-13 5.9E-18 96.3 9.4 77 47-140 1-82 (83)
9 cd03029 GRX_hybridPRX5 Glutare 99.5 3.2E-13 6.9E-18 93.1 8.5 66 49-131 2-71 (72)
10 TIGR02183 GRXA Glutaredoxin, G 99.5 4.5E-13 9.9E-18 96.5 9.5 72 50-133 2-80 (86)
11 cd02973 TRX_GRX_like Thioredox 99.5 3.9E-13 8.4E-18 90.7 8.2 65 48-120 1-66 (67)
12 COG0695 GrxC Glutaredoxin and 99.4 5.7E-13 1.2E-17 95.8 8.2 68 49-130 2-76 (80)
13 PHA03050 glutaredoxin; Provisi 99.4 1E-12 2.2E-17 99.6 9.6 79 47-142 12-101 (108)
14 TIGR00411 redox_disulf_1 small 99.4 3.1E-12 6.7E-17 88.2 10.0 80 48-134 1-81 (82)
15 TIGR02196 GlrX_YruB Glutaredox 99.4 1.8E-12 3.8E-17 86.3 8.3 69 49-132 1-74 (74)
16 cd03418 GRX_GRXb_1_3_like Glut 99.4 3.6E-12 7.7E-17 87.4 8.8 57 49-118 1-63 (75)
17 cd03027 GRX_DEP Glutaredoxin ( 99.4 3.8E-12 8.2E-17 88.1 8.7 64 49-129 2-70 (73)
18 TIGR00365 monothiol glutaredox 99.3 7E-12 1.5E-16 92.8 9.4 78 46-140 10-97 (97)
19 PF00462 Glutaredoxin: Glutare 99.3 3.6E-12 7.8E-17 85.2 6.5 55 50-117 1-60 (60)
20 TIGR02180 GRX_euk Glutaredoxin 99.3 4.7E-12 1E-16 87.7 7.3 74 50-140 1-84 (84)
21 cd03419 GRX_GRXh_1_2_like Glut 99.3 1.5E-11 3.3E-16 85.2 7.3 73 49-138 1-81 (82)
22 cd03028 GRX_PICOT_like Glutare 99.3 3.4E-11 7.3E-16 87.5 9.3 74 46-136 6-89 (90)
23 cd03026 AhpF_NTD_C TRX-GRX-lik 99.3 3.4E-11 7.3E-16 88.1 9.0 76 44-127 10-86 (89)
24 TIGR00412 redox_disulf_2 small 99.2 4E-11 8.7E-16 84.6 8.2 74 48-132 1-76 (76)
25 TIGR02200 GlrX_actino Glutared 99.2 4.6E-11 1E-15 81.2 8.3 70 49-132 1-76 (77)
26 cd02066 GRX_family Glutaredoxi 99.2 5.6E-11 1.2E-15 78.4 8.0 57 49-118 1-62 (72)
27 PRK10824 glutaredoxin-4; Provi 99.2 6.1E-11 1.3E-15 91.6 9.1 80 47-143 14-103 (115)
28 cd02976 NrdH NrdH-redoxin (Nrd 99.2 4.8E-11 1E-15 79.4 7.4 68 49-131 1-73 (73)
29 PRK12759 bifunctional gluaredo 99.2 2.8E-11 6.1E-16 109.7 8.0 77 47-142 1-90 (410)
30 cd03031 GRX_GRX_like Glutaredo 99.1 4.8E-10 1E-14 89.8 9.5 77 49-142 1-92 (147)
31 PF13192 Thioredoxin_3: Thiore 99.1 3.6E-10 7.9E-15 79.5 7.1 74 48-132 1-76 (76)
32 cd02975 PfPDO_like_N Pyrococcu 99.0 2.6E-09 5.6E-14 80.4 9.5 81 47-133 22-108 (113)
33 TIGR02187 GlrX_arch Glutaredox 98.9 5.6E-09 1.2E-13 86.0 9.6 83 44-133 131-214 (215)
34 PTZ00062 glutaredoxin; Provisi 98.9 5.5E-09 1.2E-13 87.5 9.2 80 46-142 111-200 (204)
35 PF00085 Thioredoxin: Thioredo 98.9 1.1E-08 2.3E-13 72.1 9.3 82 46-133 17-102 (103)
36 KOG0910 Thioredoxin-like prote 98.9 5.8E-09 1.3E-13 84.3 8.8 83 46-133 61-146 (150)
37 KOG1752 Glutaredoxin and relat 98.9 6.7E-09 1.4E-13 79.1 8.7 82 44-142 10-99 (104)
38 cd02949 TRX_NTR TRX domain, no 98.9 1.5E-08 3.2E-13 73.1 10.0 82 46-132 13-97 (97)
39 PHA02125 thioredoxin-like prot 98.9 8.9E-09 1.9E-13 72.0 8.2 68 50-131 2-73 (75)
40 PHA02278 thioredoxin-like prot 98.8 6E-08 1.3E-12 72.7 10.3 81 45-130 13-100 (103)
41 TIGR01295 PedC_BrcD bacterioci 98.8 2.9E-08 6.3E-13 76.2 8.7 79 47-132 24-121 (122)
42 cd02947 TRX_family TRX family; 98.8 7.3E-08 1.6E-12 65.0 9.7 79 47-131 11-92 (93)
43 cd02954 DIM1 Dim1 family; Dim1 98.8 2.6E-08 5.6E-13 76.9 7.8 78 46-129 14-95 (114)
44 cd02963 TRX_DnaJ TRX domain, D 98.8 5.6E-08 1.2E-12 72.4 8.6 85 45-133 23-110 (111)
45 TIGR03143 AhpF_homolog putativ 98.7 5.2E-08 1.1E-12 90.7 9.8 79 46-132 476-555 (555)
46 cd02956 ybbN ybbN protein fami 98.7 1.4E-07 3E-12 67.0 9.6 82 46-132 12-96 (96)
47 cd02989 Phd_like_TxnDC9 Phosdu 98.7 1.3E-07 2.7E-12 71.3 9.8 67 47-119 23-90 (113)
48 cd02985 TRX_CDSP32 TRX family, 98.7 1.7E-07 3.7E-12 68.8 10.1 84 46-135 15-103 (103)
49 cd02948 TRX_NDPK TRX domain, T 98.7 1.6E-07 3.5E-12 68.6 9.3 83 46-133 17-101 (102)
50 cd02965 HyaE HyaE family; HyaE 98.7 9.1E-08 2E-12 73.7 8.1 96 27-128 8-109 (111)
51 cd02984 TRX_PICOT TRX domain, 98.7 1.8E-07 3.9E-12 66.2 8.7 80 46-131 14-96 (97)
52 PRK10996 thioredoxin 2; Provis 98.7 2.5E-07 5.4E-12 71.9 10.2 84 46-134 52-138 (139)
53 cd02994 PDI_a_TMX PDIa family, 98.7 2.1E-07 4.6E-12 66.7 9.1 81 49-133 19-101 (101)
54 PTZ00051 thioredoxin; Provisio 98.7 1.7E-07 3.7E-12 66.6 8.3 78 46-129 18-97 (98)
55 PRK09381 trxA thioredoxin; Pro 98.6 3.8E-07 8.2E-12 66.4 10.0 84 46-134 21-107 (109)
56 TIGR01126 pdi_dom protein disu 98.6 2.3E-07 5E-12 65.4 8.5 86 45-134 12-101 (102)
57 TIGR01068 thioredoxin thioredo 98.6 3.8E-07 8.1E-12 63.8 9.3 81 47-133 15-99 (101)
58 TIGR02187 GlrX_arch Glutaredox 98.6 3.1E-07 6.8E-12 75.7 10.2 85 44-134 17-110 (215)
59 cd02957 Phd_like Phosducin (Ph 98.6 4.1E-07 8.8E-12 67.7 9.7 79 46-131 24-112 (113)
60 cd02953 DsbDgamma DsbD gamma f 98.6 1.2E-07 2.6E-12 68.7 6.1 82 47-132 12-104 (104)
61 COG3118 Thioredoxin domain-con 98.6 1.5E-07 3.3E-12 83.4 7.7 88 44-137 41-132 (304)
62 cd03041 GST_N_2GST_N GST_N fam 98.6 5E-07 1.1E-11 63.0 8.5 69 50-133 2-75 (77)
63 cd03065 PDI_b_Calsequestrin_N 98.5 5.5E-07 1.2E-11 69.7 8.9 84 47-133 28-117 (120)
64 KOG0907 Thioredoxin [Posttrans 98.5 9.7E-07 2.1E-11 67.0 9.7 82 47-134 22-105 (106)
65 cd03004 PDI_a_ERdj5_C PDIa fam 98.5 7.1E-07 1.5E-11 64.3 8.2 79 48-131 21-104 (104)
66 PRK15317 alkyl hydroperoxide r 98.5 6.3E-07 1.4E-11 82.5 9.7 81 45-133 115-196 (517)
67 cd03003 PDI_a_ERdj5_N PDIa fam 98.5 6.9E-07 1.5E-11 64.4 7.8 78 47-129 19-99 (101)
68 cd03040 GST_N_mPGES2 GST_N fam 98.5 1E-06 2.2E-11 60.7 7.8 70 49-133 1-74 (77)
69 cd02961 PDI_a_family Protein D 98.5 6.9E-07 1.5E-11 61.6 6.9 79 48-130 17-100 (101)
70 cd02987 Phd_like_Phd Phosducin 98.4 1.6E-06 3.5E-11 70.4 9.5 82 47-135 84-175 (175)
71 cd00570 GST_N_family Glutathio 98.4 1.2E-06 2.6E-11 56.3 7.1 65 50-131 1-70 (71)
72 cd03006 PDI_a_EFP1_N PDIa fami 98.4 1.3E-06 2.8E-11 66.6 8.2 80 45-130 28-112 (113)
73 cd02999 PDI_a_ERp44_like PDIa 98.4 1.7E-06 3.6E-11 63.7 8.5 80 45-130 17-99 (100)
74 TIGR03140 AhpF alkyl hydropero 98.4 1.3E-06 2.8E-11 80.5 9.7 82 45-134 116-198 (515)
75 PLN00410 U5 snRNP protein, DIM 98.4 3.1E-06 6.8E-11 67.6 10.4 65 46-115 23-89 (142)
76 cd02951 SoxW SoxW family; SoxW 98.4 1.9E-06 4.1E-11 64.5 8.6 84 47-134 15-118 (125)
77 cd03005 PDI_a_ERp46 PDIa famil 98.4 9.9E-07 2.2E-11 62.6 6.5 81 48-131 18-102 (102)
78 cd02950 TxlA TRX-like protein 98.4 2.9E-06 6.2E-11 66.4 9.7 83 46-133 20-108 (142)
79 cd02997 PDI_a_PDIR PDIa family 98.4 1.7E-06 3.7E-11 61.4 7.6 81 48-131 19-104 (104)
80 cd03001 PDI_a_P5 PDIa family, 98.4 3.6E-06 7.8E-11 59.8 9.3 80 47-131 19-102 (103)
81 cd03000 PDI_a_TMX3 PDIa family 98.4 2.8E-06 6.1E-11 61.8 8.6 85 46-133 15-102 (104)
82 cd02996 PDI_a_ERp44 PDIa famil 98.4 1.7E-06 3.7E-11 63.2 7.3 84 47-131 19-108 (108)
83 cd03059 GST_N_SspA GST_N famil 98.3 5.8E-06 1.3E-10 55.8 8.3 67 50-133 1-71 (73)
84 cd02962 TMX2 TMX2 family; comp 98.3 4E-06 8.7E-11 67.2 8.7 69 46-118 47-122 (152)
85 PF13098 Thioredoxin_2: Thiore 98.3 1.6E-06 3.5E-11 62.9 5.7 85 46-131 5-112 (112)
86 PTZ00443 Thioredoxin domain-co 98.3 7.6E-06 1.6E-10 69.5 9.9 83 46-133 52-137 (224)
87 cd03036 ArsC_like Arsenate Red 98.3 8.3E-07 1.8E-11 67.0 3.6 35 50-94 1-35 (111)
88 cd03002 PDI_a_MPD1_like PDI fa 98.3 6.9E-06 1.5E-10 59.2 8.3 80 47-131 19-108 (109)
89 cd02977 ArsC_family Arsenate R 98.2 7.9E-07 1.7E-11 65.7 3.2 35 50-94 1-35 (105)
90 cd03055 GST_N_Omega GST_N fami 98.2 1.2E-05 2.7E-10 57.6 9.1 71 44-131 13-88 (89)
91 cd02998 PDI_a_ERp38 PDIa famil 98.2 7E-06 1.5E-10 58.0 7.6 82 47-131 19-105 (105)
92 PF14595 Thioredoxin_9: Thiore 98.2 1.5E-06 3.1E-11 67.9 4.2 84 45-133 40-127 (129)
93 cd02982 PDI_b'_family Protein 98.2 7E-06 1.5E-10 58.6 7.0 82 46-133 12-101 (103)
94 cd03037 GST_N_GRX2 GST_N famil 98.2 1.2E-05 2.6E-10 54.6 7.6 65 51-132 2-70 (71)
95 cd03045 GST_N_Delta_Epsilon GS 98.2 1.7E-05 3.7E-10 53.7 8.4 66 50-132 1-73 (74)
96 cd03030 GRX_SH3BGR Glutaredoxi 98.2 9E-06 1.9E-10 60.4 7.3 64 60-140 18-90 (92)
97 PRK01655 spxA transcriptional 98.2 2.9E-06 6.2E-11 66.1 4.8 35 50-94 2-36 (131)
98 PRK12559 transcriptional regul 98.1 1.3E-05 2.8E-10 62.7 8.0 35 50-94 2-36 (131)
99 cd03035 ArsC_Yffb Arsenate Red 98.1 5E-06 1.1E-10 62.6 5.2 35 50-94 1-35 (105)
100 TIGR02740 TraF-like TraF-like 98.1 2.3E-05 5.1E-10 67.8 9.9 82 45-132 165-261 (271)
101 cd03033 ArsC_15kD Arsenate Red 98.1 1.9E-05 4E-10 60.4 8.0 35 49-93 1-35 (113)
102 TIGR01617 arsC_related transcr 98.1 4.9E-06 1.1E-10 63.0 4.4 36 50-95 1-36 (117)
103 cd02952 TRP14_like Human TRX-r 98.1 2.1E-05 4.7E-10 60.9 7.8 80 46-131 21-118 (119)
104 cd03060 GST_N_Omega_like GST_N 98.0 2.3E-05 5.1E-10 53.4 6.9 55 51-117 2-60 (71)
105 cd02986 DLP Dim1 family, Dim1- 98.0 1.4E-05 3.1E-10 62.0 6.3 68 45-118 13-82 (114)
106 cd03051 GST_N_GTT2_like GST_N 98.0 4.6E-05 1E-09 50.9 7.7 66 50-131 1-73 (74)
107 cd03056 GST_N_4 GST_N family, 98.0 5.9E-05 1.3E-09 50.6 8.2 65 50-131 1-72 (73)
108 PRK13344 spxA transcriptional 98.0 9.2E-06 2E-10 63.6 4.8 35 50-94 2-36 (132)
109 PF13417 GST_N_3: Glutathione 98.0 5.4E-05 1.2E-09 52.3 8.0 66 52-134 1-70 (75)
110 cd03032 ArsC_Spx Arsenate Redu 98.0 1.2E-05 2.7E-10 60.7 4.8 35 50-94 2-36 (115)
111 cd02995 PDI_a_PDI_a'_C PDIa fa 97.9 5.1E-05 1.1E-09 53.6 7.4 80 47-130 19-103 (104)
112 cd02988 Phd_like_VIAF Phosduci 97.9 5.5E-05 1.2E-09 62.5 8.7 80 47-135 103-192 (192)
113 TIGR02738 TrbB type-F conjugat 97.9 9.9E-05 2.2E-09 59.1 9.2 82 46-133 50-151 (153)
114 PRK13728 conjugal transfer pro 97.9 0.00012 2.6E-09 60.7 9.8 77 50-132 73-168 (181)
115 cd02993 PDI_a_APS_reductase PD 97.9 7.4E-05 1.6E-09 55.0 7.3 81 46-130 21-108 (109)
116 PF13728 TraF: F plasmid trans 97.8 0.00013 2.8E-09 61.3 8.5 79 46-130 120-213 (215)
117 cd01659 TRX_superfamily Thiore 97.8 8.2E-05 1.8E-09 45.1 5.5 55 50-109 1-59 (69)
118 TIGR00014 arsC arsenate reduct 97.8 0.00011 2.4E-09 55.7 7.1 35 50-94 1-35 (114)
119 PTZ00102 disulphide isomerase; 97.8 0.00017 3.7E-09 64.5 9.4 90 46-137 49-140 (477)
120 PRK00293 dipZ thiol:disulfide 97.7 0.00013 2.8E-09 69.2 8.7 83 47-134 475-569 (571)
121 cd02959 ERp19 Endoplasmic reti 97.7 6.9E-05 1.5E-09 56.9 5.7 67 47-117 20-90 (117)
122 TIGR01130 ER_PDI_fam protein d 97.7 0.00016 3.4E-09 63.7 8.2 87 47-135 19-109 (462)
123 PTZ00102 disulphide isomerase; 97.7 0.00022 4.7E-09 63.9 8.8 88 46-136 375-466 (477)
124 TIGR01616 nitro_assoc nitrogen 97.7 0.00021 4.6E-09 55.8 7.3 35 49-93 2-36 (126)
125 cd03058 GST_N_Tau GST_N family 97.6 0.00053 1.1E-08 46.8 7.8 67 50-133 1-72 (74)
126 cd03053 GST_N_Phi GST_N family 97.5 0.001 2.2E-08 45.2 8.8 67 50-133 2-75 (76)
127 cd02955 SSP411 TRX domain, SSP 97.5 0.00056 1.2E-08 53.1 8.3 68 48-119 17-96 (124)
128 PRK03147 thiol-disulfide oxido 97.5 0.00056 1.2E-08 53.0 8.3 87 45-134 60-171 (173)
129 cd03010 TlpA_like_DsbE TlpA-li 97.5 0.00048 1E-08 51.2 7.4 77 45-127 24-126 (127)
130 COG4545 Glutaredoxin-related p 97.5 0.00027 5.9E-09 52.1 5.8 56 51-118 5-77 (85)
131 PRK10853 putative reductase; P 97.5 0.00021 4.6E-09 55.0 5.5 35 50-94 2-36 (118)
132 PTZ00062 glutaredoxin; Provisi 97.5 0.00073 1.6E-08 56.8 9.1 75 47-135 18-94 (204)
133 TIGR00424 APS_reduc 5'-adenyly 97.5 0.00047 1E-08 64.4 8.6 84 46-133 371-461 (463)
134 PRK15412 thiol:disulfide inter 97.5 0.0015 3.2E-08 52.7 10.2 82 45-133 67-174 (185)
135 TIGR00385 dsbE periplasmic pro 97.5 0.0009 2E-08 53.2 8.8 81 46-133 63-169 (173)
136 PLN02309 5'-adenylylsulfate re 97.4 0.00059 1.3E-08 63.7 8.2 86 45-134 364-456 (457)
137 cd03049 GST_N_3 GST_N family, 97.4 0.0011 2.5E-08 44.9 7.5 68 50-131 1-72 (73)
138 PRK14018 trifunctional thiored 97.4 0.0011 2.4E-08 62.8 9.8 89 45-136 55-174 (521)
139 cd03007 PDI_a_ERp29_N PDIa fam 97.4 0.001 2.2E-08 51.6 7.6 77 49-134 21-115 (116)
140 cd03052 GST_N_GDAP1 GST_N fami 97.3 0.0018 3.8E-08 45.0 8.0 65 50-131 1-72 (73)
141 COG0278 Glutaredoxin-related p 97.3 0.0018 4E-08 49.8 8.6 77 47-140 14-101 (105)
142 PRK11509 hydrogenase-1 operon 97.3 0.0016 3.6E-08 51.6 8.3 99 29-133 17-122 (132)
143 TIGR01130 ER_PDI_fam protein d 97.2 0.0014 3E-08 57.7 8.1 88 46-139 364-458 (462)
144 cd03054 GST_N_Metaxin GST_N fa 97.2 0.0016 3.5E-08 44.2 6.6 57 57-133 15-71 (72)
145 cd03008 TryX_like_RdCVF Trypar 97.2 0.0024 5.1E-08 51.1 8.3 92 46-143 25-146 (146)
146 cd03011 TlpA_like_ScsD_MtbDsbE 97.2 0.0025 5.4E-08 46.7 7.8 77 45-130 19-121 (123)
147 PRK10026 arsenate reductase; P 97.2 0.00047 1E-08 55.1 4.1 38 47-94 1-38 (141)
148 cd02966 TlpA_like_family TlpA- 97.2 0.0021 4.6E-08 44.5 7.0 45 46-93 19-63 (116)
149 TIGR02739 TraF type-F conjugat 97.2 0.0024 5.1E-08 55.6 8.6 78 48-131 152-244 (256)
150 cd03061 GST_N_CLIC GST_N famil 97.1 0.0028 6E-08 47.1 7.4 62 56-134 20-85 (91)
151 TIGR02661 MauD methylamine deh 97.1 0.0062 1.3E-07 49.4 9.8 83 45-133 73-177 (189)
152 COG1393 ArsC Arsenate reductas 97.0 0.00075 1.6E-08 52.2 4.0 37 48-94 1-37 (117)
153 PF04908 SH3BGR: SH3-binding, 97.0 0.003 6.4E-08 47.8 6.8 75 49-140 2-96 (99)
154 PRK13703 conjugal pilus assemb 97.0 0.0039 8.4E-08 54.1 8.4 79 47-131 144-237 (248)
155 cd03034 ArsC_ArsC Arsenate Red 97.0 0.00072 1.6E-08 51.1 3.4 35 50-94 1-35 (112)
156 PRK10387 glutaredoxin 2; Provi 97.0 0.0041 8.9E-08 49.6 7.9 69 50-134 1-72 (210)
157 cd03009 TryX_like_TryX_NRX Try 97.0 0.0027 5.8E-08 47.5 6.3 71 45-117 17-113 (131)
158 PRK09481 sspA stringent starva 96.9 0.0078 1.7E-07 48.8 9.3 69 49-134 10-82 (211)
159 cd02992 PDI_a_QSOX PDIa family 96.9 0.0019 4.2E-08 48.4 5.3 66 47-115 20-89 (114)
160 cd03042 GST_N_Zeta GST_N famil 96.9 0.0077 1.7E-07 40.2 7.7 65 50-131 1-72 (73)
161 PRK10877 protein disulfide iso 96.9 0.0043 9.3E-08 52.5 7.4 80 45-134 106-230 (232)
162 cd02958 UAS UAS family; UAS is 96.8 0.014 3E-07 43.2 8.8 84 48-133 19-109 (114)
163 TIGR03143 AhpF_homolog putativ 96.8 0.0097 2.1E-07 55.8 9.8 82 46-132 366-451 (555)
164 cd03039 GST_N_Sigma_like GST_N 96.8 0.0074 1.6E-07 40.9 6.6 66 50-132 1-71 (72)
165 cd03044 GST_N_EF1Bgamma GST_N 96.7 0.017 3.7E-07 39.6 8.5 65 51-132 2-73 (75)
166 cd03050 GST_N_Theta GST_N fami 96.7 0.016 3.4E-07 39.6 8.2 67 50-133 1-74 (76)
167 cd03080 GST_N_Metaxin_like GST 96.7 0.011 2.3E-07 40.7 7.2 63 50-133 2-72 (75)
168 cd02967 mauD Methylamine utili 96.7 0.0042 9E-08 44.9 5.3 58 46-108 21-83 (114)
169 cd02964 TryX_like_family Trypa 96.6 0.0068 1.5E-07 45.8 6.4 72 45-118 16-114 (132)
170 cd03057 GST_N_Beta GST_N famil 96.6 0.019 4.1E-07 39.2 7.8 66 50-133 1-74 (77)
171 TIGR01626 ytfJ_HI0045 conserve 96.6 0.015 3.3E-07 48.3 8.6 93 32-131 45-176 (184)
172 cd03076 GST_N_Pi GST_N family, 96.6 0.018 3.8E-07 39.5 7.6 66 50-132 2-71 (73)
173 PRK15113 glutathione S-transfe 96.6 0.021 4.6E-07 46.3 9.3 70 47-134 3-82 (214)
174 COG4837 Uncharacterized protei 96.5 0.016 3.4E-07 44.5 7.6 86 46-136 3-104 (106)
175 COG0526 TrxA Thiol-disulfide i 96.5 0.0048 1E-07 41.4 4.4 63 48-116 34-101 (127)
176 cd03048 GST_N_Ure2p_like GST_N 96.5 0.035 7.5E-07 38.3 8.8 66 50-133 2-77 (81)
177 KOG0190 Protein disulfide isom 96.5 0.005 1.1E-07 58.2 5.7 88 49-140 45-137 (493)
178 PF13905 Thioredoxin_8: Thiore 96.4 0.013 2.7E-07 41.3 6.3 46 48-95 3-48 (95)
179 TIGR02182 GRXB Glutaredoxin, G 96.4 0.014 2.9E-07 47.7 7.3 68 51-134 1-71 (209)
180 cd03038 GST_N_etherase_LigE GS 96.4 0.012 2.6E-07 41.1 6.0 61 56-133 14-81 (84)
181 COG3019 Predicted metal-bindin 96.4 0.037 8.1E-07 45.0 9.2 76 46-135 24-104 (149)
182 PF13899 Thioredoxin_7: Thiore 96.3 0.0093 2E-07 41.8 5.1 59 47-109 18-79 (82)
183 KOG3029 Glutathione S-transfer 96.3 0.016 3.4E-07 52.3 7.5 65 48-131 89-157 (370)
184 PLN02919 haloacid dehalogenase 96.2 0.028 6E-07 57.1 9.8 87 44-133 418-534 (1057)
185 cd03046 GST_N_GTT1_like GST_N 96.2 0.047 1E-06 36.7 8.0 65 51-133 2-73 (76)
186 PF06764 DUF1223: Protein of u 96.1 0.027 5.7E-07 47.5 7.6 77 50-136 2-99 (202)
187 cd03020 DsbA_DsbC_DsbG DsbA fa 96.1 0.013 2.8E-07 47.4 5.5 25 46-70 77-101 (197)
188 PF06110 DUF953: Eukaryotic pr 96.1 0.0053 1.2E-07 47.8 2.9 51 55-109 35-95 (119)
189 PF07315 DUF1462: Protein of u 96.0 0.066 1.4E-06 40.5 8.5 77 51-132 1-93 (93)
190 PTZ00056 glutathione peroxidas 96.0 0.058 1.3E-06 44.5 8.9 61 45-108 38-109 (199)
191 KOG0908 Thioredoxin-like prote 96.0 0.028 6.1E-07 49.7 7.3 78 48-131 23-102 (288)
192 KOG0911 Glutaredoxin-related p 96.0 0.024 5.1E-07 49.0 6.7 73 48-137 139-221 (227)
193 cd03047 GST_N_2 GST_N family, 95.9 0.09 1.9E-06 35.6 8.1 55 50-117 1-62 (73)
194 cd02969 PRX_like1 Peroxiredoxi 95.8 0.093 2E-06 41.1 9.0 45 45-92 24-68 (171)
195 PLN02473 glutathione S-transfe 95.7 0.08 1.7E-06 42.5 8.6 69 49-134 2-77 (214)
196 PF03960 ArsC: ArsC family; I 95.7 0.012 2.5E-07 43.9 3.3 46 53-108 1-53 (110)
197 cd03077 GST_N_Alpha GST_N fami 95.7 0.11 2.4E-06 36.3 8.0 66 50-132 2-73 (79)
198 COG5494 Predicted thioredoxin/ 95.6 0.049 1.1E-06 47.3 7.2 76 47-133 10-86 (265)
199 PF08534 Redoxin: Redoxin; In 95.4 0.035 7.5E-07 42.0 5.2 51 42-95 24-75 (146)
200 COG2143 Thioredoxin-related pr 95.3 0.074 1.6E-06 44.3 7.0 86 45-131 41-145 (182)
201 PF13409 GST_N_2: Glutathione 95.3 0.08 1.7E-06 36.2 6.2 61 57-133 1-69 (70)
202 PLN02395 glutathione S-transfe 95.2 0.18 3.9E-06 40.4 8.9 68 49-134 2-76 (215)
203 PLN02399 phospholipid hydroper 95.1 0.21 4.5E-06 42.9 9.4 60 46-108 99-170 (236)
204 TIGR00862 O-ClC intracellular 95.0 0.12 2.6E-06 44.1 7.8 63 55-134 16-82 (236)
205 KOG0913 Thiol-disulfide isomer 94.9 0.017 3.6E-07 50.4 2.3 82 49-134 42-125 (248)
206 cd03012 TlpA_like_DipZ_like Tl 94.9 0.084 1.8E-06 39.4 5.8 61 45-108 22-91 (126)
207 KOG0191 Thioredoxin/protein di 94.8 0.15 3.3E-06 45.5 8.0 84 45-134 46-133 (383)
208 TIGR02540 gpx7 putative glutat 94.5 0.3 6.6E-06 37.7 8.2 61 45-108 21-93 (153)
209 KOG2824 Glutaredoxin-related p 94.5 0.11 2.3E-06 46.2 6.2 81 44-141 127-222 (281)
210 smart00594 UAS UAS domain. 94.4 0.41 8.9E-06 36.1 8.6 82 48-131 29-121 (122)
211 PHA03075 glutaredoxin-like pro 94.3 0.068 1.5E-06 42.2 4.3 37 47-91 2-38 (123)
212 cd02960 AGR Anterior Gradient 94.3 0.04 8.6E-07 43.6 2.9 68 48-116 25-92 (130)
213 PF02798 GST_N: Glutathione S- 94.2 0.54 1.2E-05 32.5 8.2 56 48-118 1-65 (76)
214 TIGR01262 maiA maleylacetoacet 94.0 0.23 4.9E-06 39.6 6.8 67 51-134 1-75 (210)
215 PLN02412 probable glutathione 93.9 0.46 1E-05 37.7 8.4 120 46-176 29-166 (167)
216 PRK10357 putative glutathione 93.9 0.34 7.4E-06 38.5 7.6 69 50-134 1-73 (202)
217 COG0625 Gst Glutathione S-tran 93.8 0.33 7.1E-06 39.1 7.5 70 50-135 1-76 (211)
218 PLN02378 glutathione S-transfe 93.7 0.3 6.6E-06 39.8 7.1 62 56-134 18-83 (213)
219 cd03023 DsbA_Com1_like DsbA fa 93.6 0.16 3.4E-06 37.8 4.9 42 45-91 4-45 (154)
220 cd02970 PRX_like2 Peroxiredoxi 93.3 0.21 4.7E-06 37.1 5.2 59 47-108 24-86 (149)
221 PRK11657 dsbG disulfide isomer 92.9 0.19 4.2E-06 43.0 5.1 27 45-71 116-142 (251)
222 PF03190 Thioredox_DsbH: Prote 92.9 0.57 1.2E-05 38.5 7.5 68 50-121 41-120 (163)
223 KOG0190 Protein disulfide isom 92.8 0.19 4.1E-06 47.8 5.2 85 49-136 387-474 (493)
224 PTZ00256 glutathione peroxidas 92.7 0.82 1.8E-05 36.8 8.2 81 25-108 17-112 (183)
225 PLN02817 glutathione dehydroge 92.6 0.48 1E-05 40.9 7.1 62 56-134 71-136 (265)
226 PF02114 Phosducin: Phosducin; 92.5 0.59 1.3E-05 40.8 7.5 86 46-138 146-241 (265)
227 cd03018 PRX_AhpE_like Peroxire 92.4 0.2 4.4E-06 37.7 4.0 58 48-108 30-91 (149)
228 cd02978 KaiB_like KaiB-like fa 92.2 0.38 8.3E-06 34.7 5.0 57 49-108 3-60 (72)
229 COG4232 Thiol:disulfide interc 92.2 0.35 7.6E-06 46.7 6.2 85 48-134 476-567 (569)
230 PF00578 AhpC-TSA: AhpC/TSA fa 92.0 0.39 8.4E-06 34.7 5.0 62 44-108 23-88 (124)
231 COG2999 GrxB Glutaredoxin 2 [P 92.0 0.09 2E-06 44.7 1.9 54 51-116 2-58 (215)
232 KOG0406 Glutathione S-transfer 92.0 0.4 8.7E-06 41.5 5.8 58 48-118 8-70 (231)
233 cd02974 AhpF_NTD_N Alkyl hydro 91.7 2.1 4.6E-05 31.7 8.7 72 44-132 17-91 (94)
234 cd03043 GST_N_1 GST_N family, 91.6 1.4 3E-05 30.1 7.2 50 55-117 7-62 (73)
235 PRK13972 GSH-dependent disulfi 91.6 1.8 3.9E-05 34.9 8.9 70 50-134 2-82 (215)
236 PF06953 ArsD: Arsenical resis 91.3 1.4 3.1E-05 34.5 7.8 76 47-132 1-99 (123)
237 PF13848 Thioredoxin_6: Thiore 91.1 3.5 7.5E-05 31.7 9.8 81 49-133 98-184 (184)
238 cd03017 PRX_BCP Peroxiredoxin 91.0 0.64 1.4E-05 34.5 5.3 60 46-108 23-86 (140)
239 cd00340 GSH_Peroxidase Glutath 90.8 0.53 1.1E-05 36.4 4.9 60 45-108 21-92 (152)
240 KOG2501 Thioredoxin, nucleored 90.3 0.37 8.1E-06 39.5 3.8 73 42-117 28-129 (157)
241 cd03014 PRX_Atyp2cys Peroxired 90.3 0.83 1.8E-05 34.3 5.5 58 46-108 26-88 (143)
242 cd02971 PRX_family Peroxiredox 90.1 0.64 1.4E-05 34.4 4.7 61 45-108 21-86 (140)
243 KOG3425 Uncharacterized conser 90.0 0.31 6.8E-06 38.8 3.0 50 55-108 42-100 (128)
244 cd02972 DsbA_family DsbA famil 89.8 0.51 1.1E-05 31.8 3.7 38 50-91 1-38 (98)
245 PRK09301 circadian clock prote 89.7 1.6 3.5E-05 33.6 6.6 86 47-137 6-92 (103)
246 TIGR02654 circ_KaiB circadian 89.1 1.4 3E-05 32.9 5.7 58 49-109 5-63 (87)
247 KOG1422 Intracellular Cl- chan 88.9 1.7 3.6E-05 37.6 6.8 63 57-134 20-84 (221)
248 cd03019 DsbA_DsbA DsbA family, 87.6 1.5 3.2E-05 33.8 5.3 43 45-91 14-56 (178)
249 PTZ00057 glutathione s-transfe 87.2 6 0.00013 31.9 8.8 69 49-134 4-82 (205)
250 cd02968 SCO SCO (an acronym fo 86.7 2.1 4.5E-05 31.8 5.6 61 45-108 21-92 (142)
251 cd03015 PRX_Typ2cys Peroxiredo 85.9 5.1 0.00011 31.5 7.7 41 48-91 31-72 (173)
252 KOG0191 Thioredoxin/protein di 85.8 2.4 5.3E-05 37.9 6.4 90 46-138 162-255 (383)
253 KOG1695 Glutathione S-transfer 85.5 3.2 7E-05 35.1 6.7 73 47-136 1-78 (206)
254 KOG4277 Uncharacterized conser 85.2 2 4.3E-05 39.6 5.5 96 45-144 42-143 (468)
255 PRK15317 alkyl hydroperoxide r 85.0 6 0.00013 36.7 8.8 72 44-132 17-91 (517)
256 COG5429 Uncharacterized secret 84.8 2.5 5.5E-05 37.2 5.8 77 48-135 43-141 (261)
257 PRK10606 btuE putative glutath 84.4 4.2 9.2E-05 33.4 6.8 121 45-176 24-183 (183)
258 TIGR03140 AhpF alkyl hydropero 84.3 7 0.00015 36.3 8.9 73 44-132 17-92 (515)
259 cd03079 GST_N_Metaxin2 GST_N f 84.1 4.3 9.2E-05 29.0 5.9 58 57-133 16-73 (74)
260 PF13462 Thioredoxin_4: Thiore 83.9 1.3 2.8E-05 33.5 3.3 48 44-93 10-57 (162)
261 PRK13190 putative peroxiredoxi 83.7 9.4 0.0002 31.3 8.5 80 52-134 34-153 (202)
262 PRK09437 bcp thioredoxin-depen 81.9 2.1 4.5E-05 32.7 3.7 60 46-108 30-93 (154)
263 PRK10382 alkyl hydroperoxide r 81.7 15 0.00032 30.2 9.0 85 49-136 34-157 (187)
264 PF07689 KaiB: KaiB domain; I 81.6 0.51 1.1E-05 34.6 0.3 54 52-108 2-56 (82)
265 PRK00522 tpx lipid hydroperoxi 81.1 5.1 0.00011 31.7 5.8 58 46-108 44-106 (167)
266 cd03016 PRX_1cys Peroxiredoxin 81.1 9.5 0.00021 31.2 7.6 39 50-91 30-68 (203)
267 TIGR03137 AhpC peroxiredoxin. 81.0 14 0.0003 29.8 8.4 24 48-71 33-57 (187)
268 PRK10542 glutathionine S-trans 80.0 7.3 0.00016 30.6 6.4 67 51-134 2-76 (201)
269 KOG0867 Glutathione S-transfer 79.2 14 0.00031 30.8 8.2 69 48-133 1-76 (226)
270 cd03075 GST_N_Mu GST_N family, 78.4 18 0.00038 25.3 7.3 57 59-132 10-79 (82)
271 PF04134 DUF393: Protein of un 78.3 23 0.0005 25.7 8.7 70 53-136 2-79 (114)
272 PRK11752 putative S-transferas 77.0 29 0.00063 29.5 9.6 76 47-133 42-127 (264)
273 PF01323 DSBA: DSBA-like thior 75.5 2.4 5.1E-05 33.1 2.4 24 49-72 1-24 (193)
274 PRK13599 putative peroxiredoxi 75.5 34 0.00073 28.6 9.5 81 51-134 34-155 (215)
275 COG3620 Predicted transcriptio 74.7 13 0.00028 31.4 6.6 68 95-172 89-158 (187)
276 COG3634 AhpF Alkyl hydroperoxi 74.2 7.6 0.00016 36.7 5.6 77 49-133 119-196 (520)
277 PF09822 ABC_transp_aux: ABC-t 74.2 38 0.00083 28.6 9.6 54 42-99 21-79 (271)
278 cd02983 P5_C P5 family, C-term 73.7 13 0.00028 28.7 6.1 72 63-137 41-117 (130)
279 PF01216 Calsequestrin: Calseq 72.1 24 0.00052 32.9 8.2 61 78-139 86-148 (383)
280 KOG0912 Thiol-disulfide isomer 72.0 8.7 0.00019 35.3 5.4 95 46-141 13-112 (375)
281 cd03078 GST_N_Metaxin1_like GS 71.7 10 0.00022 26.4 4.6 59 57-135 15-73 (73)
282 PF01323 DSBA: DSBA-like thior 71.0 4.1 8.9E-05 31.7 2.8 34 96-132 159-193 (193)
283 cd03025 DsbA_FrnE_like DsbA fa 69.9 4.1 8.9E-05 31.9 2.6 25 48-72 1-25 (193)
284 PTZ00137 2-Cys peroxiredoxin; 69.1 63 0.0014 28.2 10.0 41 94-134 172-224 (261)
285 TIGR03759 conj_TIGR03759 integ 67.7 17 0.00036 31.1 5.9 44 44-95 106-149 (200)
286 COG3011 Predicted thiol-disulf 67.1 20 0.00043 28.9 5.9 78 48-135 8-87 (137)
287 PRK13191 putative peroxiredoxi 65.0 38 0.00082 28.3 7.5 81 51-134 39-160 (215)
288 KOG4420 Uncharacterized conser 64.4 14 0.0003 33.4 5.0 68 49-133 26-100 (325)
289 PF11287 DUF3088: Protein of u 60.1 30 0.00064 27.1 5.6 70 57-133 23-105 (112)
290 PF13462 Thioredoxin_4: Thiore 57.2 10 0.00022 28.5 2.5 35 95-133 127-162 (162)
291 PF14424 Toxin-deaminase: The 57.0 23 0.0005 27.9 4.6 24 48-71 97-121 (133)
292 PF11009 DUF2847: Protein of u 56.8 68 0.0015 24.6 7.0 76 48-128 20-105 (105)
293 cd03023 DsbA_Com1_like DsbA fa 56.7 11 0.00023 27.8 2.6 33 95-131 120-153 (154)
294 cd03022 DsbA_HCCA_Iso DsbA fam 55.5 8.5 0.00018 29.9 1.9 23 50-72 1-23 (192)
295 KOG2603 Oligosaccharyltransfer 55.4 37 0.0008 31.1 6.1 88 46-133 60-164 (331)
296 cd03021 DsbA_GSTK DsbA family, 53.8 13 0.00028 30.3 2.8 25 48-72 1-25 (209)
297 PRK10954 periplasmic protein d 53.7 25 0.00055 28.7 4.6 86 46-139 37-138 (207)
298 TIGR02742 TrbC_Ftype type-F co 53.0 60 0.0013 25.6 6.4 54 90-143 57-124 (130)
299 cd03024 DsbA_FrnE DsbA family, 52.8 16 0.00034 28.8 3.1 23 50-72 1-23 (201)
300 COG2761 FrnE Predicted dithiol 52.5 13 0.00028 32.2 2.7 29 44-72 2-30 (225)
301 PRK13730 conjugal transfer pil 52.3 32 0.00069 29.7 5.0 44 92-135 150-194 (212)
302 PF13848 Thioredoxin_6: Thiore 52.1 39 0.00086 25.7 5.2 66 82-150 22-90 (184)
303 PF06053 DUF929: Domain of unk 51.9 26 0.00056 30.7 4.5 26 46-71 58-83 (249)
304 PRK15000 peroxidase; Provision 47.2 1.2E+02 0.0026 24.9 7.6 17 55-71 44-60 (200)
305 PTZ00253 tryparedoxin peroxida 47.0 1.3E+02 0.0028 24.3 7.7 41 49-92 39-80 (199)
306 COG1651 DsbG Protein-disulfide 46.1 75 0.0016 26.0 6.3 46 44-92 82-127 (244)
307 PF07912 ERp29_N: ERp29, N-ter 45.3 92 0.002 24.9 6.3 53 81-134 53-118 (126)
308 KOG0868 Glutathione S-transfer 43.8 37 0.0008 29.2 4.1 66 49-133 7-80 (217)
309 cd03073 PDI_b'_ERp72_ERp57 PDI 42.2 70 0.0015 24.0 5.1 52 82-133 51-109 (111)
310 TIGR03439 methyl_EasF probable 41.9 1.4E+02 0.0031 26.7 7.8 35 55-94 82-116 (319)
311 PRK05988 formate dehydrogenase 41.2 48 0.001 26.7 4.2 79 42-134 70-154 (156)
312 KOG3414 Component of the U4/U6 40.6 1.1E+02 0.0024 24.9 6.1 59 44-107 21-81 (142)
313 KOG0914 Thioredoxin-like prote 39.2 22 0.00049 31.3 2.1 85 49-140 147-250 (265)
314 PRK07571 bidirectional hydroge 38.5 39 0.00085 27.7 3.4 77 43-133 84-166 (169)
315 cd03024 DsbA_FrnE DsbA family, 38.4 34 0.00075 26.8 3.0 31 98-131 169-200 (201)
316 PF14237 DUF4339: Domain of un 37.9 42 0.00092 21.1 2.8 25 112-138 6-30 (45)
317 cd03012 TlpA_like_DipZ_like Tl 37.1 1.2E+02 0.0027 22.1 5.7 37 81-118 83-120 (126)
318 TIGR03521 GldG gliding-associa 36.2 1.6E+02 0.0036 28.0 7.6 68 23-95 19-97 (552)
319 cd03072 PDI_b'_ERp44 PDIb' fam 35.1 1.3E+02 0.0029 22.3 5.6 79 49-133 20-106 (111)
320 PRK00464 nrdR transcriptional 34.3 68 0.0015 26.1 4.1 59 112-175 54-117 (154)
321 PF00290 Trp_syntA: Tryptophan 33.8 1.3E+02 0.0028 26.3 6.1 110 46-170 8-160 (259)
322 PRK03708 ppnK inorganic polyph 32.4 2E+02 0.0044 25.1 7.0 78 48-133 1-108 (277)
323 KOG4244 Failed axon connection 31.8 73 0.0016 28.6 4.2 65 48-132 44-115 (281)
324 PF13743 Thioredoxin_5: Thiore 31.5 47 0.001 26.7 2.7 21 52-72 2-22 (176)
325 cd03013 PRX5_like Peroxiredoxi 31.4 92 0.002 24.3 4.4 57 49-108 33-96 (155)
326 KOG1651 Glutathione peroxidase 31.1 2.6E+02 0.0057 23.4 7.1 136 27-176 13-171 (171)
327 PRK01231 ppnK inorganic polyph 30.8 1.9E+02 0.0042 25.5 6.7 81 46-134 3-115 (295)
328 cd02991 UAS_ETEA UAS family, E 30.4 2.4E+02 0.0052 21.3 8.3 52 82-133 52-111 (116)
329 cd07973 Spt4 Transcription elo 30.1 65 0.0014 24.4 3.1 40 90-136 54-96 (98)
330 PRK11657 dsbG disulfide isomer 30.0 64 0.0014 27.6 3.5 41 93-133 208-250 (251)
331 COG1999 Uncharacterized protei 29.9 3.2E+02 0.007 22.6 7.8 85 43-137 64-154 (207)
332 PF03477 ATP-cone: ATP cone do 29.7 1.9E+02 0.0041 20.1 5.4 59 112-175 6-70 (90)
333 COG1905 NuoE NADH:ubiquinone o 28.7 61 0.0013 26.7 3.0 81 42-136 72-158 (160)
334 TIGR03429 arom_pren_DMATS arom 28.2 37 0.00081 31.0 1.8 50 112-162 11-60 (406)
335 PF00837 T4_deiodinase: Iodoth 26.9 2.9E+02 0.0062 24.2 6.9 47 82-134 182-236 (237)
336 PLN00118 isocitrate dehydrogen 26.2 2E+02 0.0043 26.7 6.1 50 46-105 40-91 (372)
337 PRK13189 peroxiredoxin; Provis 25.0 1.1E+02 0.0024 25.6 4.0 21 51-71 41-61 (222)
338 PF08534 Redoxin: Redoxin; In 24.9 2.8E+02 0.006 20.5 5.8 44 64-119 76-130 (146)
339 TIGR03406 FeS_long_SufT probab 24.4 73 0.0016 26.3 2.7 40 53-97 121-160 (174)
340 KOG1672 ATP binding protein [P 24.2 3.9E+02 0.0085 23.1 7.1 87 44-136 82-179 (211)
341 COG1331 Highly conserved prote 23.7 3.5E+02 0.0076 27.2 7.6 114 54-175 51-194 (667)
342 TIGR01958 nuoE_fam NADH-quinon 23.0 1.5E+02 0.0033 23.3 4.2 28 102-134 120-147 (148)
343 PF09673 TrbC_Ftype: Type-F co 22.1 60 0.0013 24.6 1.7 23 88-110 55-78 (113)
344 PF09825 BPL_N: Biotin-protein 22.1 2.2E+02 0.0047 26.3 5.6 86 48-144 1-95 (367)
345 cd03022 DsbA_HCCA_Iso DsbA fam 21.9 81 0.0018 24.4 2.5 30 98-131 161-191 (192)
346 PF04239 DUF421: Protein of un 21.5 84 0.0018 23.3 2.3 36 103-140 6-45 (99)
347 PHA00729 NTP-binding motif con 21.4 5.3E+02 0.011 22.1 8.5 24 48-71 18-41 (226)
348 cd03066 PDI_b_Calsequestrin_mi 21.0 1.8E+02 0.0038 20.9 3.9 46 89-134 52-100 (102)
349 PRK04539 ppnK inorganic polyph 20.8 4.5E+02 0.0097 23.2 7.2 31 101-133 90-120 (296)
350 PF00004 AAA: ATPase family as 20.7 2E+02 0.0043 20.3 4.1 32 50-91 1-32 (132)
351 PF02966 DIM1: Mitosis protein 20.2 3.6E+02 0.0078 21.7 5.8 65 47-116 21-86 (133)
No 1
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=99.85 E-value=3.6e-21 Score=137.66 Aligned_cols=75 Identities=41% Similarity=0.714 Sum_probs=66.5
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCCccceeEEeccCC------eEEEeccC
Q 030511 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDG------TEVLMACI 122 (176)
Q Consensus 49 kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~~VPVL~i~~idG------e~l~~~~f 122 (176)
+|++|||||||+|+.+++.|+++ ....+++++.|||++|++|.++|+++||||+ .+| .....|+|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~------~~~~~~~l~~vDI~~d~~l~~~Y~~~IPVl~---~~~~~~~~~~~~~~~~~ 71 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEV------AAEFPFELEEVDIDEDPELFEKYGYRIPVLH---IDGIRQFKEQEELKWRF 71 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHC------CTTSTCEEEEEETTTTHHHHHHSCTSTSEEE---ETT-GGGCTSEEEESSB
T ss_pred CEEEEcCCCCChHHHHHHHHHHH------HhhcCceEEEEECCCCHHHHHHhcCCCCEEE---EcCcccccccceeCCCC
Confidence 58999999999999999999987 3456899999999999999999999999999 777 78888999
Q ss_pred CHHHHHHHHH
Q 030511 123 NRFRIEAWLS 132 (176)
Q Consensus 123 d~deL~~~L~ 132 (176)
+.++|.++|+
T Consensus 72 d~~~L~~~L~ 81 (81)
T PF05768_consen 72 DEEQLRAWLE 81 (81)
T ss_dssp -HHHHHHHHH
T ss_pred CHHHHHHHhC
Confidence 9999999985
No 2
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.58 E-value=1.1e-14 Score=104.85 Aligned_cols=71 Identities=14% Similarity=0.351 Sum_probs=60.2
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHh---cC-CccceeEEeccCCeEEEeccCC
Q 030511 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKS---YQ-YEIPVLARVLSDGTEVLMACIN 123 (176)
Q Consensus 48 ~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~ek---y~-~~VPVL~i~~idGe~l~~~~fd 123 (176)
++|++||++|||+|+.+|++|++. |++|+++||++|+++++. .| ..||||+ ++|.. |.+|+
T Consensus 1 ~~v~lYt~~~Cp~C~~ak~~L~~~----------gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~---i~~~~--~~Gf~ 65 (81)
T PRK10329 1 MRITIYTRNDCVQCHATKRAMESR----------GFDFEMINVDRVPEAAETLRAQGFRQLPVVI---AGDLS--WSGFR 65 (81)
T ss_pred CEEEEEeCCCCHhHHHHHHHHHHC----------CCceEEEECCCCHHHHHHHHHcCCCCcCEEE---ECCEE--EecCC
Confidence 479999999999999999999886 999999999999875443 34 4799999 67754 57999
Q ss_pred HHHHHHHHHh
Q 030511 124 RFRIEAWLSQ 133 (176)
Q Consensus 124 ~deL~~~L~~ 133 (176)
+++|.++..+
T Consensus 66 ~~~l~~~~~~ 75 (81)
T PRK10329 66 PDMINRLHPA 75 (81)
T ss_pred HHHHHHHHHh
Confidence 9999998754
No 3
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.58 E-value=4.7e-15 Score=102.84 Aligned_cols=67 Identities=22% Similarity=0.436 Sum_probs=58.1
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhc---CC-ccceeEEeccCCeEEEeccCCHH
Q 030511 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSY---QY-EIPVLARVLSDGTEVLMACINRF 125 (176)
Q Consensus 50 ItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky---~~-~VPVL~i~~idGe~l~~~~fd~d 125 (176)
|++|++++||+|..++++|++. +++|+++||++|++.++++ |+ .||+++ +||+. .|++|+++
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~----------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~---~~g~~-~~~G~~~~ 66 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEH----------GIAFEEINIDEQPEAIDYVKAQGFRQVPVIV---ADGDL-SWSGFRPD 66 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHC----------CCceEEEECCCCHHHHHHHHHcCCcccCEEE---ECCCc-EEeccCHH
Confidence 5899999999999999999886 9999999999998766655 65 799999 77753 57899999
Q ss_pred HHHHH
Q 030511 126 RIEAW 130 (176)
Q Consensus 126 eL~~~ 130 (176)
+|.++
T Consensus 67 ~~~~~ 71 (72)
T TIGR02194 67 KLKAL 71 (72)
T ss_pred HHHhc
Confidence 99874
No 4
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.53 E-value=5.8e-14 Score=99.28 Aligned_cols=72 Identities=19% Similarity=0.392 Sum_probs=57.8
Q ss_pred CCCCCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCH---HHHHhcCC-ccceeEEeccCCeEEE
Q 030511 43 SSSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP---EWEKSYQY-EIPVLARVLSDGTEVL 118 (176)
Q Consensus 43 ~~~~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~---el~eky~~-~VPVL~i~~idGe~l~ 118 (176)
+....++|+||+++|||+|..+|+.|++. |++|+++||++|+ ++.+.+|. .||+|+ +||+.+
T Consensus 3 ~~~~~~~V~ly~~~~Cp~C~~ak~~L~~~----------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~---i~g~~i- 68 (79)
T TIGR02190 3 QARKPESVVVFTKPGCPFCAKAKATLKEK----------GYDFEEIPLGNDARGRSLRAVTGATTVPQVF---IGGKLI- 68 (79)
T ss_pred CcCCCCCEEEEECCCCHhHHHHHHHHHHc----------CCCcEEEECCCChHHHHHHHHHCCCCcCeEE---ECCEEE-
Confidence 45667789999999999999999999876 9999999999874 35555564 799999 899875
Q ss_pred eccCCHHHHHHHH
Q 030511 119 MACINRFRIEAWL 131 (176)
Q Consensus 119 ~~~fd~deL~~~L 131 (176)
+++ ++|.++|
T Consensus 69 -gG~--~~l~~~l 78 (79)
T TIGR02190 69 -GGS--DELEAYL 78 (79)
T ss_pred -cCH--HHHHHHh
Confidence 333 6666665
No 5
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.53 E-value=3.8e-14 Score=105.32 Aligned_cols=79 Identities=24% Similarity=0.393 Sum_probs=63.1
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHH---HHHhc----C-CccceeEEeccCCeEE
Q 030511 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPE---WEKSY----Q-YEIPVLARVLSDGTEV 117 (176)
Q Consensus 46 ~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~e---l~eky----~-~~VPVL~i~~idGe~l 117 (176)
+..+|++||++|||+|..+|.+|++. +++|+++||+++++ +.+.+ | .+||+|+ +||+.+
T Consensus 6 ~~~~Vvvysk~~Cp~C~~ak~~L~~~----------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vf---i~g~~i 72 (99)
T TIGR02189 6 SEKAVVIFSRSSCCMCHVVKRLLLTL----------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVF---VGGKLV 72 (99)
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHc----------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEE---ECCEEE
Confidence 34679999999999999999999986 89999999998754 33333 3 4799999 899875
Q ss_pred EeccCCHHHHHHHHHhCCchhHHH
Q 030511 118 LMACINRFRIEAWLSQMSLDCVMA 141 (176)
Q Consensus 118 ~~~~fd~deL~~~L~~~~l~~~~~ 141 (176)
|+ .+++.++.++..|..++.
T Consensus 73 --GG--~ddl~~l~~~G~L~~~l~ 92 (99)
T TIGR02189 73 --GG--LENVMALHISGSLVPMLK 92 (99)
T ss_pred --cC--HHHHHHHHHcCCHHHHHH
Confidence 34 477888888888877764
No 6
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.52 E-value=8.1e-14 Score=99.25 Aligned_cols=74 Identities=23% Similarity=0.387 Sum_probs=59.2
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCH----HHHHhcC---CccceeEEeccCCeEEEec
Q 030511 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP----EWEKSYQ---YEIPVLARVLSDGTEVLMA 120 (176)
Q Consensus 48 ~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~----el~eky~---~~VPVL~i~~idGe~l~~~ 120 (176)
|+|++|+++|||+|++++++|+++. .+..+++|+++||++|+ ++.+.++ ..||+|+ +||+.++
T Consensus 1 m~v~iy~~~~C~~C~~a~~~L~~l~-----~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if---i~g~~ig-- 70 (85)
T PRK11200 1 MFVVIFGRPGCPYCVRAKELAEKLS-----EERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF---VDQKHIG-- 70 (85)
T ss_pred CEEEEEeCCCChhHHHHHHHHHhhc-----ccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE---ECCEEEc--
Confidence 5899999999999999999999973 22259999999999864 5666666 4799999 8998864
Q ss_pred cCCHHHHHHHHHh
Q 030511 121 CINRFRIEAWLSQ 133 (176)
Q Consensus 121 ~fd~deL~~~L~~ 133 (176)
+.++|.++++.
T Consensus 71 --g~~~~~~~~~~ 81 (85)
T PRK11200 71 --GCTDFEAYVKE 81 (85)
T ss_pred --CHHHHHHHHHH
Confidence 45777777654
No 7
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.49 E-value=1.4e-13 Score=96.07 Aligned_cols=73 Identities=19% Similarity=0.269 Sum_probs=61.8
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhc----C-CccceeEEeccCCeEEEeccCCH
Q 030511 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSY----Q-YEIPVLARVLSDGTEVLMACINR 124 (176)
Q Consensus 50 ItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky----~-~~VPVL~i~~idGe~l~~~~fd~ 124 (176)
|++||+++||+|..++++|++. +++|+++||+.|+++++++ + ..+|+|+ +||+.+. +.
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~----------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~---i~g~~ig----g~ 63 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK----------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIF---IGDVHVG----GC 63 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc----------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEE---ECCEEEc----Ch
Confidence 6899999999999999999886 8999999999998776654 3 4699999 8998753 56
Q ss_pred HHHHHHHHhCCchhH
Q 030511 125 FRIEAWLSQMSLDCV 139 (176)
Q Consensus 125 deL~~~L~~~~l~~~ 139 (176)
+++.++-++..|+.+
T Consensus 64 ~~~~~~~~~g~l~~~ 78 (79)
T TIGR02181 64 DDLYALDREGKLDPL 78 (79)
T ss_pred HHHHHHHHcCChhhh
Confidence 788888888887765
No 8
>PRK10638 glutaredoxin 3; Provisional
Probab=99.48 E-value=2.7e-13 Score=96.29 Aligned_cols=77 Identities=18% Similarity=0.247 Sum_probs=63.9
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhc----CC-ccceeEEeccCCeEEEecc
Q 030511 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSY----QY-EIPVLARVLSDGTEVLMAC 121 (176)
Q Consensus 47 ~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky----~~-~VPVL~i~~idGe~l~~~~ 121 (176)
|.+|++|++++||+|..++.+|++. +++|+++||+++++..+.+ +. .||+|+ +||+.+. +
T Consensus 1 m~~v~ly~~~~Cp~C~~a~~~L~~~----------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~---~~g~~ig--G 65 (83)
T PRK10638 1 MANVEIYTKATCPFCHRAKALLNSK----------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIF---IDAQHIG--G 65 (83)
T ss_pred CCcEEEEECCCChhHHHHHHHHHHc----------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE---ECCEEEe--C
Confidence 3479999999999999999999986 8999999999887554443 44 699998 7998764 4
Q ss_pred CCHHHHHHHHHhCCchhHH
Q 030511 122 INRFRIEAWLSQMSLDCVM 140 (176)
Q Consensus 122 fd~deL~~~L~~~~l~~~~ 140 (176)
| +++.++-.+.+|.+++
T Consensus 66 ~--~~~~~~~~~g~l~~~~ 82 (83)
T PRK10638 66 C--DDLYALDARGGLDPLL 82 (83)
T ss_pred H--HHHHHHHHcCCHHHHh
Confidence 4 8999999998888765
No 9
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.47 E-value=3.2e-13 Score=93.10 Aligned_cols=66 Identities=20% Similarity=0.374 Sum_probs=54.2
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHH---HHHhcCC-ccceeEEeccCCeEEEeccCCH
Q 030511 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPE---WEKSYQY-EIPVLARVLSDGTEVLMACINR 124 (176)
Q Consensus 49 kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~e---l~eky~~-~VPVL~i~~idGe~l~~~~fd~ 124 (176)
+|++||++|||+|..+|++|++. +++|+++||+++++ +...+|. .||+|+ +||+.+. +.
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~----------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~if---i~g~~ig----g~ 64 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQEN----------GISYEEIPLGKDITGRSLRAVTGAMTVPQVF---IDGELIG----GS 64 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHc----------CCCcEEEECCCChhHHHHHHHhCCCCcCeEE---ECCEEEe----CH
Confidence 69999999999999999999986 89999999998774 2233454 799999 8998753 56
Q ss_pred HHHHHHH
Q 030511 125 FRIEAWL 131 (176)
Q Consensus 125 deL~~~L 131 (176)
++|.++|
T Consensus 65 ~~l~~~l 71 (72)
T cd03029 65 DDLEKYF 71 (72)
T ss_pred HHHHHHh
Confidence 7787776
No 10
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.46 E-value=4.5e-13 Score=96.55 Aligned_cols=72 Identities=21% Similarity=0.345 Sum_probs=57.5
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCH----HHHHhcC---CccceeEEeccCCeEEEeccC
Q 030511 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP----EWEKSYQ---YEIPVLARVLSDGTEVLMACI 122 (176)
Q Consensus 50 ItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~----el~eky~---~~VPVL~i~~idGe~l~~~~f 122 (176)
|++||++|||+|..+|+.|+++. .+..+++|+++||+.+. ++.+.++ ..||+|+ +||+.+.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~-----~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if---i~g~~ig---- 69 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLA-----IERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF---VDEKHVG---- 69 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhC-----cccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE---ECCEEec----
Confidence 79999999999999999999873 12236899999998654 5777777 5799999 8998764
Q ss_pred CHHHHHHHHHh
Q 030511 123 NRFRIEAWLSQ 133 (176)
Q Consensus 123 d~deL~~~L~~ 133 (176)
+.++|.+++++
T Consensus 70 G~~dl~~~~~~ 80 (86)
T TIGR02183 70 GCTDFEQLVKE 80 (86)
T ss_pred CHHHHHHHHHh
Confidence 45777777765
No 11
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.46 E-value=3.9e-13 Score=90.75 Aligned_cols=65 Identities=12% Similarity=0.326 Sum_probs=56.4
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCeEEEec
Q 030511 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVLMA 120 (176)
Q Consensus 48 ~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe~l~~~ 120 (176)
.+|++|+++||++|..+++.|+++. ....++++..+|+++++++.++|+. .+|+++ +||+.++.|
T Consensus 1 ~~v~~f~~~~C~~C~~~~~~l~~l~-----~~~~~i~~~~id~~~~~~l~~~~~i~~vPti~---i~~~~~~~g 66 (67)
T cd02973 1 VNIEVFVSPTCPYCPDAVQAANRIA-----ALNPNISAEMIDAAEFPDLADEYGVMSVPAIV---INGKVEFVG 66 (67)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHH-----HhCCceEEEEEEcccCHhHHHHcCCcccCEEE---ECCEEEEec
Confidence 3699999999999999999999874 2234799999999999999999998 699999 899887654
No 12
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=5.7e-13 Score=95.81 Aligned_cols=68 Identities=28% Similarity=0.447 Sum_probs=54.4
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCH--H---HHHhc-C-CccceeEEeccCCeEEEecc
Q 030511 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP--E---WEKSY-Q-YEIPVLARVLSDGTEVLMAC 121 (176)
Q Consensus 49 kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~--e---l~eky-~-~~VPVL~i~~idGe~l~~~~ 121 (176)
.|++||+++||+|..+|+.|++. |++|+++|++.++ + ..++. | ..||+|+ +||+.+ +|.
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~----------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~---i~~~~i-gg~ 67 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRK----------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIF---IGGKHV-GGC 67 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHc----------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEE---ECCEEE-eCc
Confidence 58999999999999999999986 9999999999776 2 33333 4 4799999 899854 456
Q ss_pred CCHHHHHHH
Q 030511 122 INRFRIEAW 130 (176)
Q Consensus 122 fd~deL~~~ 130 (176)
++.+++.+.
T Consensus 68 ~d~~~~~~~ 76 (80)
T COG0695 68 DDLDALEAK 76 (80)
T ss_pred ccHHHHHhh
Confidence 777776553
No 13
>PHA03050 glutaredoxin; Provisional
Probab=99.43 E-value=1e-12 Score=99.63 Aligned_cols=79 Identities=14% Similarity=0.163 Sum_probs=62.5
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCc---ceEEEEcCC---CHHHH----HhcCC-ccceeEEeccCCe
Q 030511 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDV---DLQVRDITT---NPEWE----KSYQY-EIPVLARVLSDGT 115 (176)
Q Consensus 47 ~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gi---e~eeIDIde---D~el~----eky~~-~VPVL~i~~idGe 115 (176)
..+|++|+++|||+|..+|.+|++. ++ +|+++||++ +.+++ +..|. .||+|+ +||+
T Consensus 12 ~~~V~vys~~~CPyC~~ak~~L~~~----------~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~If---I~g~ 78 (108)
T PHA03050 12 NNKVTIFVKFTCPFCRNALDILNKF----------SFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIF---FGKT 78 (108)
T ss_pred cCCEEEEECCCChHHHHHHHHHHHc----------CCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEE---ECCE
Confidence 3579999999999999999999986 55 799999996 33433 33454 799999 8998
Q ss_pred EEEeccCCHHHHHHHHHhCCchhHHHH
Q 030511 116 EVLMACINRFRIEAWLSQMSLDCVMAY 142 (176)
Q Consensus 116 ~l~~~~fd~deL~~~L~~~~l~~~~~~ 142 (176)
.+. + .++|.++-.+..|+++++-
T Consensus 79 ~iG--G--~ddl~~l~~~g~L~~~l~~ 101 (108)
T PHA03050 79 SIG--G--YSDLLEIDNMDALGDILSS 101 (108)
T ss_pred EEe--C--hHHHHHHHHcCCHHHHHHH
Confidence 763 3 4788888888888888764
No 14
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.41 E-value=3.1e-12 Score=88.25 Aligned_cols=80 Identities=15% Similarity=0.337 Sum_probs=65.7
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCeEEEeccCCHHH
Q 030511 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVLMACINRFR 126 (176)
Q Consensus 48 ~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe~l~~~~fd~de 126 (176)
.+|++|+++||++|..++..|+++.. .....+.+..||++++++..++|+. .+|+++ .||+....|..++++
T Consensus 1 ~~v~~f~~~~C~~C~~~~~~l~~l~~----~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~---~~g~~~~~G~~~~~~ 73 (82)
T TIGR00411 1 VKIELFTSPTCPYCPAAKRVVEEVAK----EMGDAVEVEYINVMENPQKAMEYGIMAVPAIV---INGDVEFIGAPTKEE 73 (82)
T ss_pred CEEEEEECCCCcchHHHHHHHHHHHH----HhcCceEEEEEeCccCHHHHHHcCCccCCEEE---ECCEEEEecCCCHHH
Confidence 36899999999999999999998741 0112478899999999999999997 599999 688865557779999
Q ss_pred HHHHHHhC
Q 030511 127 IEAWLSQM 134 (176)
Q Consensus 127 L~~~L~~~ 134 (176)
|.++|.+.
T Consensus 74 l~~~l~~~ 81 (82)
T TIGR00411 74 LVEAIKKR 81 (82)
T ss_pred HHHHHHhh
Confidence 99988753
No 15
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.40 E-value=1.8e-12 Score=86.32 Aligned_cols=69 Identities=19% Similarity=0.340 Sum_probs=57.8
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHH----HHhcCC-ccceeEEeccCCeEEEeccCC
Q 030511 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEW----EKSYQY-EIPVLARVLSDGTEVLMACIN 123 (176)
Q Consensus 49 kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el----~eky~~-~VPVL~i~~idGe~l~~~~fd 123 (176)
+|++|+.+||++|..++..|++. +++|.++||+++++. .+.++. .||+++ .+|+. +.+++
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~----------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~---~~~~~--~~g~~ 65 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSK----------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIV---IGHKI--IVGFD 65 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHC----------CCeEEEEeccCCHHHHHHHHHHhCCCcccEEE---ECCEE--EeeCC
Confidence 38999999999999999999875 899999999988764 455775 699999 67765 45689
Q ss_pred HHHHHHHHH
Q 030511 124 RFRIEAWLS 132 (176)
Q Consensus 124 ~deL~~~L~ 132 (176)
+++|.+++.
T Consensus 66 ~~~i~~~i~ 74 (74)
T TIGR02196 66 PEKLDQLLE 74 (74)
T ss_pred HHHHHHHhC
Confidence 999998873
No 16
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.38 E-value=3.6e-12 Score=87.37 Aligned_cols=57 Identities=23% Similarity=0.409 Sum_probs=48.5
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHh----cCC--ccceeEEeccCCeEEE
Q 030511 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKS----YQY--EIPVLARVLSDGTEVL 118 (176)
Q Consensus 49 kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~ek----y~~--~VPVL~i~~idGe~l~ 118 (176)
+|++|++++||+|..++.+|++. +++|+++||+.+++..++ ++. .||+|+ +||+.++
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~----------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~---i~g~~ig 63 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKK----------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIF---IGDVHIG 63 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHC----------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE---ECCEEEe
Confidence 48999999999999999999886 899999999998765443 453 799999 8998763
No 17
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.37 E-value=3.8e-12 Score=88.09 Aligned_cols=64 Identities=17% Similarity=0.276 Sum_probs=52.0
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHH----HhcC-CccceeEEeccCCeEEEeccCC
Q 030511 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWE----KSYQ-YEIPVLARVLSDGTEVLMACIN 123 (176)
Q Consensus 49 kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~----eky~-~~VPVL~i~~idGe~l~~~~fd 123 (176)
+|+||++++|++|..++.+|++. +++|+++||+++++.. +..+ ..+|+++ +||+.++ +
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~----------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~---i~~~~iG----g 64 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREK----------GLPYVEINIDIFPERKAELEERTGSSVVPQIF---FNEKLVG----G 64 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHC----------CCceEEEECCCCHHHHHHHHHHhCCCCcCEEE---ECCEEEe----C
Confidence 69999999999999999999986 9999999999887643 3445 4699999 8998764 4
Q ss_pred HHHHHH
Q 030511 124 RFRIEA 129 (176)
Q Consensus 124 ~deL~~ 129 (176)
.+++.+
T Consensus 65 ~~~~~~ 70 (73)
T cd03027 65 LTDLKS 70 (73)
T ss_pred HHHHHh
Confidence 455544
No 18
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.35 E-value=7e-12 Score=92.85 Aligned_cols=78 Identities=23% Similarity=0.318 Sum_probs=64.0
Q ss_pred CCceEEEEeC-----CCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHh----cCC-ccceeEEeccCCe
Q 030511 46 STRKLVLYSK-----PGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKS----YQY-EIPVLARVLSDGT 115 (176)
Q Consensus 46 ~~~kItLYTk-----pgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~ek----y~~-~VPVL~i~~idGe 115 (176)
...+|++|++ |+||+|..+|++|++. +++|+++||++|++.++. .|. .||+|+ +||+
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~----------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vf---i~g~ 76 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKAC----------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLY---VKGE 76 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHc----------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEE---ECCE
Confidence 3457999998 9999999999999986 899999999988865543 344 799999 8998
Q ss_pred EEEeccCCHHHHHHHHHhCCchhHH
Q 030511 116 EVLMACINRFRIEAWLSQMSLDCVM 140 (176)
Q Consensus 116 ~l~~~~fd~deL~~~L~~~~l~~~~ 140 (176)
.+. +.+++.++.++..|..++
T Consensus 77 ~iG----G~ddl~~l~~~g~L~~~l 97 (97)
T TIGR00365 77 FVG----GCDIIMEMYQSGELQTLL 97 (97)
T ss_pred EEe----ChHHHHHHHHCcChHHhC
Confidence 765 568888888888887653
No 19
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.33 E-value=3.6e-12 Score=85.15 Aligned_cols=55 Identities=27% Similarity=0.496 Sum_probs=47.0
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHH----hcC-CccceeEEeccCCeEE
Q 030511 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEK----SYQ-YEIPVLARVLSDGTEV 117 (176)
Q Consensus 50 ItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~e----ky~-~~VPVL~i~~idGe~l 117 (176)
|++||++||++|..+++.|++. +++|+++||+++++.++ .++ ..+|+++ +||+.+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~----------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~---i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK----------GIPYEEVDVDEDEEAREELKELSGVRTVPQVF---IDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT----------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEE---ETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc----------CCeeeEcccccchhHHHHHHHHcCCCccCEEE---ECCEEC
Confidence 7899999999999999999886 89999999999975444 336 4799999 899753
No 20
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.33 E-value=4.7e-12 Score=87.68 Aligned_cols=74 Identities=22% Similarity=0.288 Sum_probs=56.7
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcc--eEEEEcCC--CHH-----HHHhcCC-ccceeEEeccCCeEEEe
Q 030511 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVD--LQVRDITT--NPE-----WEKSYQY-EIPVLARVLSDGTEVLM 119 (176)
Q Consensus 50 ItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie--~eeIDIde--D~e-----l~eky~~-~VPVL~i~~idGe~l~~ 119 (176)
|++|+++|||+|.+++++|+++ +++ |+.+||+. +++ +.+.++. .+|+++ +||+.+.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~----------~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~---i~g~~ig- 66 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKL----------NVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIF---INGKFIG- 66 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHc----------CCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEE---ECCEEEc-
Confidence 6899999999999999999987 344 55556553 332 4455665 799999 8998753
Q ss_pred ccCCHHHHHHHHHhCCchhHH
Q 030511 120 ACINRFRIEAWLSQMSLDCVM 140 (176)
Q Consensus 120 ~~fd~deL~~~L~~~~l~~~~ 140 (176)
+.+++.++..+..|+.++
T Consensus 67 ---g~~~~~~~~~~g~l~~~~ 84 (84)
T TIGR02180 67 ---GCSDLLALYKSGKLAELL 84 (84)
T ss_pred ---CHHHHHHHHHcCChhhhC
Confidence 468999999999888763
No 21
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.28 E-value=1.5e-11 Score=85.17 Aligned_cols=73 Identities=19% Similarity=0.199 Sum_probs=55.1
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCC---HH----HHHhcCC-ccceeEEeccCCeEEEec
Q 030511 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN---PE----WEKSYQY-EIPVLARVLSDGTEVLMA 120 (176)
Q Consensus 49 kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD---~e----l~eky~~-~VPVL~i~~idGe~l~~~ 120 (176)
+|++|+++|||+|..++++|++. +++|+.+||+.+ .+ +.+.++. .+|+++ +||+.+.
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~----------~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~---~~g~~ig-- 65 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKEL----------GVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVF---IGGKFIG-- 65 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHc----------CCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEE---ECCEEEc--
Confidence 48999999999999999999987 556776666643 22 3334565 799998 8998753
Q ss_pred cCCHHHHHHHHHhCCchh
Q 030511 121 CINRFRIEAWLSQMSLDC 138 (176)
Q Consensus 121 ~fd~deL~~~L~~~~l~~ 138 (176)
+.+++.++..+..|..
T Consensus 66 --g~~~~~~~~~~g~l~~ 81 (82)
T cd03419 66 --GCDDLMALHKSGKLVK 81 (82)
T ss_pred --CHHHHHHHHHcCCccC
Confidence 5677888887777654
No 22
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.27 E-value=3.4e-11 Score=87.45 Aligned_cols=74 Identities=22% Similarity=0.287 Sum_probs=58.9
Q ss_pred CCceEEEEeC-----CCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHh----cCC-ccceeEEeccCCe
Q 030511 46 STRKLVLYSK-----PGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKS----YQY-EIPVLARVLSDGT 115 (176)
Q Consensus 46 ~~~kItLYTk-----pgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~ek----y~~-~VPVL~i~~idGe 115 (176)
...+|++|++ |+|++|..+|++|++. +++|+++||++|++.++. .|. .+|+|+ +||+
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~----------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vf---i~g~ 72 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQL----------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQLY---VNGE 72 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc----------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEE---ECCE
Confidence 3457999998 7999999999999986 899999999999865543 354 799999 8998
Q ss_pred EEEeccCCHHHHHHHHHhCCc
Q 030511 116 EVLMACINRFRIEAWLSQMSL 136 (176)
Q Consensus 116 ~l~~~~fd~deL~~~L~~~~l 136 (176)
.+. +.+++.++.++..|
T Consensus 73 ~iG----G~~~l~~l~~~g~L 89 (90)
T cd03028 73 LVG----GCDIVKEMHESGEL 89 (90)
T ss_pred EEe----CHHHHHHHHHcCCc
Confidence 753 34677777666655
No 23
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.27 E-value=3.4e-11 Score=88.06 Aligned_cols=76 Identities=11% Similarity=0.100 Sum_probs=64.8
Q ss_pred CCCCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCeEEEeccC
Q 030511 44 SSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVLMACI 122 (176)
Q Consensus 44 ~~~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe~l~~~~f 122 (176)
...+.+|.+|+.+||++|..+++.++++. ....+++++.+|+++.+++.++|+. .||.++ +||+..+.|..
T Consensus 10 l~~pv~i~~F~~~~C~~C~~~~~~~~~l~-----~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~v---idG~~~~~G~~ 81 (89)
T cd03026 10 LNGPINFETYVSLSCHNCPDVVQALNLMA-----VLNPNIEHEMIDGALFQDEVEERGIMSVPAIF---LNGELFGFGRM 81 (89)
T ss_pred cCCCEEEEEEECCCCCCcHHHHHHHHHHH-----HHCCCceEEEEEhHhCHHHHHHcCCccCCEEE---ECCEEEEeCCC
Confidence 34567899999999999999999999985 2233799999999999999999998 599998 79998887766
Q ss_pred CHHHH
Q 030511 123 NRFRI 127 (176)
Q Consensus 123 d~deL 127 (176)
+.+++
T Consensus 82 ~~~e~ 86 (89)
T cd03026 82 TLEEI 86 (89)
T ss_pred CHHHH
Confidence 66664
No 24
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.25 E-value=4e-11 Score=84.58 Aligned_cols=74 Identities=22% Similarity=0.317 Sum_probs=57.9
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCeEEEecc-CCHH
Q 030511 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVLMAC-INRF 125 (176)
Q Consensus 48 ~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe~l~~~~-fd~d 125 (176)
|+|.+|+ +|||.|+.+++.++++. ++.+..++.++|++ ++...+|+. .+|+++ +||+.++.|. .+.+
T Consensus 1 m~i~~~a-~~C~~C~~~~~~~~~~~------~e~~~~~~~~~v~~-~~~a~~~~v~~vPti~---i~G~~~~~G~~~~~~ 69 (76)
T TIGR00412 1 MKIQIYG-TGCANCQMTEKNVKKAV------EELGIDAEFEKVTD-MNEILEAGVTATPGVA---VDGELVIMGKIPSKE 69 (76)
T ss_pred CEEEEEC-CCCcCHHHHHHHHHHHH------HHcCCCeEEEEeCC-HHHHHHcCCCcCCEEE---ECCEEEEEeccCCHH
Confidence 4688888 99999999999998874 33477888899984 444667886 699999 7999886665 4558
Q ss_pred HHHHHHH
Q 030511 126 RIEAWLS 132 (176)
Q Consensus 126 eL~~~L~ 132 (176)
+|.++|+
T Consensus 70 ~l~~~l~ 76 (76)
T TIGR00412 70 EIKEILK 76 (76)
T ss_pred HHHHHhC
Confidence 8888763
No 25
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.25 E-value=4.6e-11 Score=81.23 Aligned_cols=70 Identities=17% Similarity=0.285 Sum_probs=56.4
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhc-----CC-ccceeEEeccCCeEEEeccC
Q 030511 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSY-----QY-EIPVLARVLSDGTEVLMACI 122 (176)
Q Consensus 49 kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky-----~~-~VPVL~i~~idGe~l~~~~f 122 (176)
+|++|+++||+.|..++..|++. +++|+.+||+++++..+.+ +. .||+++. .||+. +...
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~----------~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~--~~g~~--l~~~ 66 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKL----------GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKF--ADGSF--LTNP 66 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHc----------CCceEEEeCcCCHhHHHHHHHHhCCCceeCEEEE--CCCeE--ecCC
Confidence 58999999999999999999886 8899999999887655553 44 7999962 46654 4578
Q ss_pred CHHHHHHHHH
Q 030511 123 NRFRIEAWLS 132 (176)
Q Consensus 123 d~deL~~~L~ 132 (176)
+..+|.+.|.
T Consensus 67 ~~~~~~~~l~ 76 (77)
T TIGR02200 67 SAAQVKAKLQ 76 (77)
T ss_pred CHHHHHHHhh
Confidence 8888888775
No 26
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.23 E-value=5.6e-11 Score=78.42 Aligned_cols=57 Identities=23% Similarity=0.444 Sum_probs=48.1
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHh----cCC-ccceeEEeccCCeEEE
Q 030511 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKS----YQY-EIPVLARVLSDGTEVL 118 (176)
Q Consensus 49 kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~ek----y~~-~VPVL~i~~idGe~l~ 118 (176)
+|++|+++||++|..++.+|++. +++|+++||+++++..+. .+. .+|+++ .||+.+.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~----------~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~---~~~~~ig 62 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESL----------GIEFEEIDILEDGELREELKELSGWPTVPQIF---INGEFIG 62 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHc----------CCcEEEEECCCCHHHHHHHHHHhCCCCcCEEE---ECCEEEe
Confidence 48999999999999999999986 799999999998764443 454 799999 7998764
No 27
>PRK10824 glutaredoxin-4; Provisional
Probab=99.23 E-value=6.1e-11 Score=91.60 Aligned_cols=80 Identities=21% Similarity=0.261 Sum_probs=67.3
Q ss_pred CceEEEEeC-----CCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhc----C-CccceeEEeccCCeE
Q 030511 47 TRKLVLYSK-----PGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSY----Q-YEIPVLARVLSDGTE 116 (176)
Q Consensus 47 ~~kItLYTk-----pgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky----~-~~VPVL~i~~idGe~ 116 (176)
..+|++|++ |+||+|..+|++|++. +++|.++||++|++.++.. | ..||.|+ +||+.
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~----------~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIF---I~G~~ 80 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSAC----------GERFAYVDILQNPDIRAELPKYANWPTFPQLW---VDGEL 80 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHc----------CCCceEEEecCCHHHHHHHHHHhCCCCCCeEE---ECCEE
Confidence 457999998 6999999999999987 8999999999998755543 3 3799999 89998
Q ss_pred EEeccCCHHHHHHHHHhCCchhHHHHh
Q 030511 117 VLMACINRFRIEAWLSQMSLDCVMAYQ 143 (176)
Q Consensus 117 l~~~~fd~deL~~~L~~~~l~~~~~~~ 143 (176)
++ +.+++.++..+..|+.++.-.
T Consensus 81 IG----G~ddl~~l~~~G~L~~lL~~~ 103 (115)
T PRK10824 81 VG----GCDIVIEMYQRGELQQLIKET 103 (115)
T ss_pred Ec----ChHHHHHHHHCCCHHHHHHHH
Confidence 85 468999999999999988543
No 28
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=99.22 E-value=4.8e-11 Score=79.38 Aligned_cols=68 Identities=21% Similarity=0.438 Sum_probs=56.2
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhc----C-CccceeEEeccCCeEEEeccCC
Q 030511 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSY----Q-YEIPVLARVLSDGTEVLMACIN 123 (176)
Q Consensus 49 kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky----~-~~VPVL~i~~idGe~l~~~~fd 123 (176)
.+++|+.+||+.|..++..|+.. +++|..+||+.+++..+.+ + ..||+|+ .+|+. +++++
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~----------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~---~~~~~--i~g~~ 65 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDER----------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVV---IGDEH--LSGFR 65 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHC----------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEE---ECCEE--EecCC
Confidence 47999999999999999999875 8999999999887655544 3 3699998 67753 46899
Q ss_pred HHHHHHHH
Q 030511 124 RFRIEAWL 131 (176)
Q Consensus 124 ~deL~~~L 131 (176)
+++|+++|
T Consensus 66 ~~~l~~~~ 73 (73)
T cd02976 66 PDKLRALL 73 (73)
T ss_pred HHHHHhhC
Confidence 99998875
No 29
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.22 E-value=2.8e-11 Score=109.69 Aligned_cols=77 Identities=12% Similarity=0.195 Sum_probs=60.1
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHH---Hh---------cC-CccceeEEeccC
Q 030511 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWE---KS---------YQ-YEIPVLARVLSD 113 (176)
Q Consensus 47 ~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~---ek---------y~-~~VPVL~i~~id 113 (176)
|.+|++||++|||+|..+|+.|++. |++|++|||++|++.. ++ .| ..||+|+ +|
T Consensus 1 m~~V~vys~~~Cp~C~~aK~~L~~~----------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~if---i~ 67 (410)
T PRK12759 1 MVEVRIYTKTNCPFCDLAKSWFGAN----------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIF---VG 67 (410)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHC----------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEE---EC
Confidence 4579999999999999999999986 9999999999887432 23 23 3799999 78
Q ss_pred CeEEEeccCCHHHHHHHHHhCCchhHHHH
Q 030511 114 GTEVLMACINRFRIEAWLSQMSLDCVMAY 142 (176)
Q Consensus 114 Ge~l~~~~fd~deL~~~L~~~~l~~~~~~ 142 (176)
|+. +|+|+.... ++..|+++++-
T Consensus 68 ~~~--igGf~~l~~----~~g~l~~~~~~ 90 (410)
T PRK12759 68 DVH--IGGYDNLMA----RAGEVIARVKG 90 (410)
T ss_pred CEE--EeCchHHHH----HhCCHHHHhcC
Confidence 865 468866543 66677776653
No 30
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=99.11 E-value=4.8e-10 Score=89.76 Aligned_cols=77 Identities=16% Similarity=0.253 Sum_probs=66.2
Q ss_pred eEEEEeCC------CCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHH----HhcC-----CccceeEEeccC
Q 030511 49 KLVLYSKP------GCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWE----KSYQ-----YEIPVLARVLSD 113 (176)
Q Consensus 49 kItLYTkp------gC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~----eky~-----~~VPVL~i~~id 113 (176)
+|+|||++ +|++|..+|.+|+++ +++|+++||+.|++.. +..+ ..+|+|+ ++
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~----------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVF---I~ 67 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESF----------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVF---VD 67 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHC----------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEE---EC
Confidence 58999999 999999999999986 8999999999887544 3334 4799999 89
Q ss_pred CeEEEeccCCHHHHHHHHHhCCchhHHHH
Q 030511 114 GTEVLMACINRFRIEAWLSQMSLDCVMAY 142 (176)
Q Consensus 114 Ge~l~~~~fd~deL~~~L~~~~l~~~~~~ 142 (176)
|+.+. +.+++.++-++..|..+++-
T Consensus 68 G~~IG----G~del~~L~e~G~L~~lL~~ 92 (147)
T cd03031 68 GRYLG----GAEEVLRLNESGELRKLLKG 92 (147)
T ss_pred CEEEe----cHHHHHHHHHcCCHHHHHhh
Confidence 98875 78999999999999999863
No 31
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=99.09 E-value=3.6e-10 Score=79.54 Aligned_cols=74 Identities=23% Similarity=0.425 Sum_probs=59.1
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCeEEEec-cCCHH
Q 030511 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVLMA-CINRF 125 (176)
Q Consensus 48 ~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe~l~~~-~fd~d 125 (176)
++|.+ ..++|+.|..+.+.++... ...+++++.+|+++.+++ .+||. ++|.++ +||+..+.| -.+.+
T Consensus 1 m~I~v-~~~~C~~C~~~~~~~~~~~------~~~~i~~ei~~~~~~~~~-~~ygv~~vPalv---Ing~~~~~G~~p~~~ 69 (76)
T PF13192_consen 1 MKIKV-FSPGCPYCPELVQLLKEAA------EELGIEVEIIDIEDFEEI-EKYGVMSVPALV---INGKVVFVGRVPSKE 69 (76)
T ss_dssp EEEEE-ECSSCTTHHHHHHHHHHHH------HHTTEEEEEEETTTHHHH-HHTT-SSSSEEE---ETTEEEEESS--HHH
T ss_pred CEEEE-eCCCCCCcHHHHHHHHHHH------HhcCCeEEEEEccCHHHH-HHcCCCCCCEEE---ECCEEEEEecCCCHH
Confidence 46888 5777999999999998874 234799999999544555 99997 699999 899999999 79999
Q ss_pred HHHHHHH
Q 030511 126 RIEAWLS 132 (176)
Q Consensus 126 eL~~~L~ 132 (176)
+|.++|+
T Consensus 70 el~~~l~ 76 (76)
T PF13192_consen 70 ELKELLE 76 (76)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 9999884
No 32
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.02 E-value=2.6e-09 Score=80.37 Aligned_cols=81 Identities=20% Similarity=0.319 Sum_probs=62.9
Q ss_pred CceEEE-EeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceeEEeccC----CeEEEec
Q 030511 47 TRKLVL-YSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSD----GTEVLMA 120 (176)
Q Consensus 47 ~~kItL-YTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~-~VPVL~i~~id----Ge~l~~~ 120 (176)
...+++ |+++||+.|..+++.|+++.. ....+.+..+|+++++++.++|+. .+|.+++- .+ |+..+.|
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~-----~~~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~-~~g~~~~~~~~~G 95 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLEELSE-----LSDKLKLEIYDFDEDKEKAEKYGVERVPTTIFL-QDGGKDGGIRYYG 95 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHH-----hcCceEEEEEeCCcCHHHHHHcCCCcCCEEEEE-eCCeecceEEEEe
Confidence 334544 479999999999999999852 234689999999999999999997 69999842 33 3334567
Q ss_pred cCCHHHHHHHHHh
Q 030511 121 CINRFRIEAWLSQ 133 (176)
Q Consensus 121 ~fd~deL~~~L~~ 133 (176)
-.+..++.+++.+
T Consensus 96 ~~~~~el~~~i~~ 108 (113)
T cd02975 96 LPAGYEFASLIED 108 (113)
T ss_pred cCchHHHHHHHHH
Confidence 7888888888764
No 33
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.94 E-value=5.6e-09 Score=86.05 Aligned_cols=83 Identities=10% Similarity=0.168 Sum_probs=67.4
Q ss_pred CCCCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCeEEEeccC
Q 030511 44 SSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVLMACI 122 (176)
Q Consensus 44 ~~~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe~l~~~~f 122 (176)
...+..|++|+.+||++|..++..++.+. .....+.+..+|+++++++.++|+. .+|++++. .+|+. ..|..
T Consensus 131 ~~~pv~I~~F~a~~C~~C~~~~~~l~~l~-----~~~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~-~~~~~-~~G~~ 203 (215)
T TIGR02187 131 LDEPVRIEVFVTPTCPYCPYAVLMAHKFA-----LANDKILGEMIEANENPDLAEKYGVMSVPKIVIN-KGVEE-FVGAY 203 (215)
T ss_pred cCCCcEEEEEECCCCCCcHHHHHHHHHHH-----HhcCceEEEEEeCCCCHHHHHHhCCccCCEEEEe-cCCEE-EECCC
Confidence 35566899999999999999999999874 2234688889999999999999998 69999842 44543 56778
Q ss_pred CHHHHHHHHHh
Q 030511 123 NRFRIEAWLSQ 133 (176)
Q Consensus 123 d~deL~~~L~~ 133 (176)
+.++|.++|.+
T Consensus 204 ~~~~l~~~l~~ 214 (215)
T TIGR02187 204 PEEQFLEYILS 214 (215)
T ss_pred CHHHHHHHHHh
Confidence 88999988865
No 34
>PTZ00062 glutaredoxin; Provisional
Probab=98.93 E-value=5.5e-09 Score=87.54 Aligned_cols=80 Identities=20% Similarity=0.338 Sum_probs=64.8
Q ss_pred CCceEEEEeC-----CCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHh----cCC-ccceeEEeccCCe
Q 030511 46 STRKLVLYSK-----PGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKS----YQY-EIPVLARVLSDGT 115 (176)
Q Consensus 46 ~~~kItLYTk-----pgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~ek----y~~-~VPVL~i~~idGe 115 (176)
...+|.+|+| |+|++|..+|.+|++. +++|+++||++|++.++. .+. .||+|+ ++|+
T Consensus 111 ~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~----------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVf---I~G~ 177 (204)
T PTZ00062 111 RNHKILLFMKGSKTFPFCRFSNAVVNMLNSS----------GVKYETYNIFEDPDLREELKVYSNWPTYPQLY---VNGE 177 (204)
T ss_pred hcCCEEEEEccCCCCCCChhHHHHHHHHHHc----------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEE---ECCE
Confidence 3457999988 7999999999999986 899999999999875543 344 699999 8998
Q ss_pred EEEeccCCHHHHHHHHHhCCchhHHHH
Q 030511 116 EVLMACINRFRIEAWLSQMSLDCVMAY 142 (176)
Q Consensus 116 ~l~~~~fd~deL~~~L~~~~l~~~~~~ 142 (176)
.++ +.+++.++.++..|+.++..
T Consensus 178 ~IG----G~d~l~~l~~~G~L~~~l~~ 200 (204)
T PTZ00062 178 LIG----GHDIIKELYESNSLRKVIPD 200 (204)
T ss_pred EEc----ChHHHHHHHHcCChhhhhhh
Confidence 864 44778888888888877654
No 35
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.93 E-value=1.1e-08 Score=72.15 Aligned_cols=82 Identities=21% Similarity=0.322 Sum_probs=68.0
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCC-CcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCeEE--Eecc
Q 030511 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLH-DVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEV--LMAC 121 (176)
Q Consensus 46 ~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~-gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe~l--~~~~ 121 (176)
...-|+.|+++||+.|...+..++++.. ... ++.+-.+|+++++++.++|+. .+|.++. +.+|+.. ..|.
T Consensus 17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~-----~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~-~~~g~~~~~~~g~ 90 (103)
T PF00085_consen 17 DKPVVVYFYAPWCPPCKAFKPILEKLAK-----EYKDNVKFAKVDCDENKELCKKYGVKSVPTIIF-FKNGKEVKRYNGP 90 (103)
T ss_dssp SSEEEEEEESTTSHHHHHHHHHHHHHHH-----HTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEE-EETTEEEEEEESS
T ss_pred CCCEEEEEeCCCCCccccccceeccccc-----ccccccccchhhhhccchhhhccCCCCCCEEEE-EECCcEEEEEECC
Confidence 3667899999999999999999998752 122 799999999999999999998 5999984 4788754 3366
Q ss_pred CCHHHHHHHHHh
Q 030511 122 INRFRIEAWLSQ 133 (176)
Q Consensus 122 fd~deL~~~L~~ 133 (176)
.+.++|.++|++
T Consensus 91 ~~~~~l~~~i~~ 102 (103)
T PF00085_consen 91 RNAESLIEFIEK 102 (103)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHc
Confidence 799999999986
No 36
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=5.8e-09 Score=84.35 Aligned_cols=83 Identities=18% Similarity=0.360 Sum_probs=69.0
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCCc-cceeEEeccCCeEE--EeccC
Q 030511 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYE-IPVLARVLSDGTEV--LMACI 122 (176)
Q Consensus 46 ~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~~-VPVL~i~~idGe~l--~~~~f 122 (176)
..+-|..|+.+||+.|+.+...|+++.. .....|.+-.+|+|+++++.++|+.+ ||+++ .+.||+.. +.|..
T Consensus 61 ~~PVlVdF~A~WCgPCk~l~P~l~~~~~----~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvl-vfknGe~~d~~vG~~ 135 (150)
T KOG0910|consen 61 DVPVLVDFHAEWCGPCKMLGPILEELVS----EYAGKFKLYKVDTDEHPELAEDYEISAVPTVL-VFKNGEKVDRFVGAV 135 (150)
T ss_pred CCCEEEEEecCcCccHhHhhHHHHHHHH----hhcCeEEEEEEccccccchHhhcceeeeeEEE-EEECCEEeeeecccC
Confidence 3456899999999999999999999841 11346899999999999999999985 99998 46899865 45788
Q ss_pred CHHHHHHHHHh
Q 030511 123 NRFRIEAWLSQ 133 (176)
Q Consensus 123 d~deL~~~L~~ 133 (176)
+++.|++++++
T Consensus 136 ~~~~l~~~i~k 146 (150)
T KOG0910|consen 136 PKEQLRSLIKK 146 (150)
T ss_pred CHHHHHHHHHH
Confidence 99999988875
No 37
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=6.7e-09 Score=79.11 Aligned_cols=82 Identities=21% Similarity=0.259 Sum_probs=62.8
Q ss_pred CCCCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCH---HHHHhc----C-CccceeEEeccCCe
Q 030511 44 SSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP---EWEKSY----Q-YEIPVLARVLSDGT 115 (176)
Q Consensus 44 ~~~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~---el~eky----~-~~VPVL~i~~idGe 115 (176)
+.+...|++|||++||+|+.+|+.|... ++.+.++++|+++ ++.+.+ + ..||.+| ++|+
T Consensus 10 ~i~~~~VVifSKs~C~~c~~~k~ll~~~----------~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vF---I~Gk 76 (104)
T KOG1752|consen 10 MISENPVVIFSKSSCPYCHRAKELLSDL----------GVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVF---IGGK 76 (104)
T ss_pred HhhcCCEEEEECCcCchHHHHHHHHHhC----------CCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEE---ECCE
Confidence 3455679999999999999999999885 7777777777553 222222 2 3699999 8999
Q ss_pred EEEeccCCHHHHHHHHHhCCchhHHHH
Q 030511 116 EVLMACINRFRIEAWLSQMSLDCVMAY 142 (176)
Q Consensus 116 ~l~~~~fd~deL~~~L~~~~l~~~~~~ 142 (176)
.++ +.+++.++-.+..|.+++..
T Consensus 77 ~iG----G~~dl~~lh~~G~L~~~l~~ 99 (104)
T KOG1752|consen 77 FIG----GASDLMALHKSGELVPLLKE 99 (104)
T ss_pred EEc----CHHHHHHHHHcCCHHHHHHH
Confidence 875 57888888888888887764
No 38
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.92 E-value=1.5e-08 Score=73.08 Aligned_cols=82 Identities=21% Similarity=0.242 Sum_probs=64.9
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCeEEEe--ccC
Q 030511 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVLM--ACI 122 (176)
Q Consensus 46 ~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe~l~~--~~f 122 (176)
..+.+.+|+.+||+.|..++..++++.. .-.+++.+..+|+++++++.++|+. .+|++++- .||+.+.. |..
T Consensus 13 ~~~vlv~f~a~~C~~C~~~~~~l~~l~~----~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~-~~g~~v~~~~g~~ 87 (97)
T cd02949 13 DRLILVLYTSPTCGPCRTLKPILNKVID----EFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFF-KDKELVKEISGVK 87 (97)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHHH----HhCCceEEEEEECCCCHHHHHHCCCeeccEEEEE-ECCeEEEEEeCCc
Confidence 3456889999999999999999988641 1112588999999999999999997 69999854 78886533 667
Q ss_pred CHHHHHHHHH
Q 030511 123 NRFRIEAWLS 132 (176)
Q Consensus 123 d~deL~~~L~ 132 (176)
++++|.++|+
T Consensus 88 ~~~~~~~~l~ 97 (97)
T cd02949 88 MKSEYREFIE 97 (97)
T ss_pred cHHHHHHhhC
Confidence 7888888764
No 39
>PHA02125 thioredoxin-like protein
Probab=98.91 E-value=8.9e-09 Score=72.02 Aligned_cols=68 Identities=16% Similarity=0.274 Sum_probs=52.1
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCeEE-EeccCCH--H
Q 030511 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEV-LMACINR--F 125 (176)
Q Consensus 50 ItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe~l-~~~~fd~--d 125 (176)
|++|+.+||+.|..++..|+++ .+.+-.+|+++++++.++|+. .+|+++ +|+.+ ...++++ .
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~----------~~~~~~vd~~~~~~l~~~~~v~~~PT~~----~g~~~~~~~G~~~~~~ 67 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV----------EYTYVDVDTDEGVELTAKHHIRSLPTLV----NTSTLDRFTGVPRNVA 67 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH----------hheEEeeeCCCCHHHHHHcCCceeCeEE----CCEEEEEEeCCCCcHH
Confidence 8999999999999999999875 355667777788999999997 699986 56543 2234544 5
Q ss_pred HHHHHH
Q 030511 126 RIEAWL 131 (176)
Q Consensus 126 eL~~~L 131 (176)
+|++.|
T Consensus 68 ~l~~~~ 73 (75)
T PHA02125 68 ELKEKL 73 (75)
T ss_pred HHHHHh
Confidence 666554
No 40
>PHA02278 thioredoxin-like protein
Probab=98.81 E-value=6e-08 Score=72.70 Aligned_cols=81 Identities=15% Similarity=0.217 Sum_probs=63.0
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCC----HHHHHhcCC-ccceeEEeccCCeEEEe
Q 030511 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN----PEWEKSYQY-EIPVLARVLSDGTEVLM 119 (176)
Q Consensus 45 ~~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD----~el~eky~~-~VPVL~i~~idGe~l~~ 119 (176)
...+.+..|+++||+.|...+..++++.. .....+.+..+||+.+ +++.++|+. ++|+++ .+.||+.+..
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~----~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i-~fk~G~~v~~ 87 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQE----SGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLI-GYKDGQLVKK 87 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHh----hhcCCceEEEEECCccccccHHHHHHCCCccccEEE-EEECCEEEEE
Confidence 34567899999999999999999999741 1123467999999986 689999997 699997 4689987744
Q ss_pred --ccCCHHHHHHH
Q 030511 120 --ACINRFRIEAW 130 (176)
Q Consensus 120 --~~fd~deL~~~ 130 (176)
|..++++|.++
T Consensus 88 ~~G~~~~~~l~~~ 100 (103)
T PHA02278 88 YEDQVTPMQLQEL 100 (103)
T ss_pred EeCCCCHHHHHhh
Confidence 45777777665
No 41
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.81 E-value=2.9e-08 Score=76.15 Aligned_cols=79 Identities=11% Similarity=0.262 Sum_probs=60.1
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCH-----------HHHHhcCC-----ccceeEEe
Q 030511 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP-----------EWEKSYQY-----EIPVLARV 110 (176)
Q Consensus 47 ~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~-----------el~eky~~-----~VPVL~i~ 110 (176)
..-+..|+++|||+|..+...|+++. ++.+.++-.+|++.|+ ++.++|+. .+|+++ .
T Consensus 24 ~~~iv~f~~~~Cp~C~~~~P~l~~~~------~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v-~ 96 (122)
T TIGR01295 24 ETATFFIGRKTCPYCRKFSGTLSGVV------AQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFV-H 96 (122)
T ss_pred CcEEEEEECCCChhHHHHhHHHHHHH------HhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEE-E
Confidence 34588999999999999999999984 2357889999999653 45566763 399998 4
Q ss_pred ccCCeEEEe--c-cCCHHHHHHHHH
Q 030511 111 LSDGTEVLM--A-CINRFRIEAWLS 132 (176)
Q Consensus 111 ~idGe~l~~--~-~fd~deL~~~L~ 132 (176)
+.||+++.. | ....++|.+++.
T Consensus 97 ~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 97 ITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred EeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 599987655 3 245788887764
No 42
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.80 E-value=7.3e-08 Score=64.98 Aligned_cols=79 Identities=23% Similarity=0.346 Sum_probs=63.2
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCeEEEe--ccCC
Q 030511 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVLM--ACIN 123 (176)
Q Consensus 47 ~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe~l~~--~~fd 123 (176)
.+-+.+|+.+||+.|..+++.+++... ...++.+..+|++.+.++.++|+. .+|+++.. .+|+.+.. |..+
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~-~~g~~~~~~~g~~~ 84 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAE-----EYPKVKFVKVDVDENPELAEEYGVRSIPTFLFF-KNGKEVDRVVGADP 84 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHH-----HCCCceEEEEECCCChhHHHhcCcccccEEEEE-ECCEEEEEEecCCC
Confidence 556999999999999999999999742 235899999999999999999997 69998843 67764322 5566
Q ss_pred HHHHHHHH
Q 030511 124 RFRIEAWL 131 (176)
Q Consensus 124 ~deL~~~L 131 (176)
.++|.++|
T Consensus 85 ~~~l~~~i 92 (93)
T cd02947 85 KEELEEFL 92 (93)
T ss_pred HHHHHHHh
Confidence 68888776
No 43
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.78 E-value=2.6e-08 Score=76.90 Aligned_cols=78 Identities=14% Similarity=0.258 Sum_probs=61.3
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCC-cceEEEEcCCCHHHHHhcCC-ccceeEEeccCCeEEEe--cc
Q 030511 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHD-VDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVLM--AC 121 (176)
Q Consensus 46 ~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~g-ie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe~l~~--~~ 121 (176)
..+.|..|+.+||+.|..++..|+++. .+..+ +.+-.||+|+++++.++|+. .||+++ .+.||+.+.. |.
T Consensus 14 ~~~vVV~F~A~WCgpCk~m~P~le~la-----~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~-~fk~G~~v~~~~G~ 87 (114)
T cd02954 14 EKVVVIRFGRDWDPVCMQMDEVLAKIA-----EDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVM-FFFRNKHMKIDLGT 87 (114)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHH-----HHccCceEEEEEECCCCHHHHHHcCCCCCCEEE-EEECCEEEEEEcCC
Confidence 345788899999999999999999985 22234 57899999999999999997 699997 3589987554 55
Q ss_pred CCHHHHHH
Q 030511 122 INRFRIEA 129 (176)
Q Consensus 122 fd~deL~~ 129 (176)
.|.++|.-
T Consensus 88 ~~~~~~~~ 95 (114)
T cd02954 88 GNNNKINW 95 (114)
T ss_pred CCCceEEE
Confidence 66655543
No 44
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.75 E-value=5.6e-08 Score=72.36 Aligned_cols=85 Identities=7% Similarity=0.164 Sum_probs=67.9
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCeEEEe--cc
Q 030511 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVLM--AC 121 (176)
Q Consensus 45 ~~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe~l~~--~~ 121 (176)
...+.++.|+.|||+.|......++++.. .....++.+-.+|+++++++.++|+. .+|++++ +.+|+.... |.
T Consensus 23 ~~~~vlV~F~a~wC~~C~~~~p~~~~l~~---~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i-~~~g~~~~~~~G~ 98 (111)
T cd02963 23 FKKPYLIKITSDWCFSCIHIEPVWKEVIQ---ELEPLGVGIATVNAGHERRLARKLGAHSVPAIVG-IINGQVTFYHDSS 98 (111)
T ss_pred CCCeEEEEEECCccHhHHHhhHHHHHHHH---HHHhcCceEEEEeccccHHHHHHcCCccCCEEEE-EECCEEEEEecCC
Confidence 45678999999999999999999887641 01123688899999999999999997 6999874 478887654 55
Q ss_pred CCHHHHHHHHHh
Q 030511 122 INRFRIEAWLSQ 133 (176)
Q Consensus 122 fd~deL~~~L~~ 133 (176)
.+.++|.++|++
T Consensus 99 ~~~~~l~~~i~~ 110 (111)
T cd02963 99 FTKQHVVDFVRK 110 (111)
T ss_pred CCHHHHHHHHhc
Confidence 789999999875
No 45
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.74 E-value=5.2e-08 Score=90.72 Aligned_cols=79 Identities=14% Similarity=0.241 Sum_probs=69.8
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCeEEEeccCCH
Q 030511 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVLMACINR 124 (176)
Q Consensus 46 ~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe~l~~~~fd~ 124 (176)
.+.+|++|..++||+|..+.+.++.+.. +..+++.+.+|+++.+++.++|++ .||.++ +||+.++.|..+.
T Consensus 476 ~~~~i~v~~~~~C~~Cp~~~~~~~~~~~-----~~~~i~~~~i~~~~~~~~~~~~~v~~vP~~~---i~~~~~~~G~~~~ 547 (555)
T TIGR03143 476 KPVNIKIGVSLSCTLCPDVVLAAQRIAS-----LNPNVEAEMIDVSHFPDLKDEYGIMSVPAIV---VDDQQVYFGKKTI 547 (555)
T ss_pred CCeEEEEEECCCCCCcHHHHHHHHHHHH-----hCCCceEEEEECcccHHHHHhCCceecCEEE---ECCEEEEeeCCCH
Confidence 4568999999999999999999998842 223799999999999999999998 599999 8999888899999
Q ss_pred HHHHHHHH
Q 030511 125 FRIEAWLS 132 (176)
Q Consensus 125 deL~~~L~ 132 (176)
++|.++|.
T Consensus 548 ~~~~~~~~ 555 (555)
T TIGR03143 548 EEMLELIG 555 (555)
T ss_pred HHHHHhhC
Confidence 99999874
No 46
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.73 E-value=1.4e-07 Score=66.98 Aligned_cols=82 Identities=12% Similarity=0.132 Sum_probs=64.3
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCeEE--EeccC
Q 030511 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEV--LMACI 122 (176)
Q Consensus 46 ~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe~l--~~~~f 122 (176)
..+-+..|+.+||+.|..++..++++.. .-...+.+-.+|+++++++.++|+. .+|++++- .+|+.+ ..|..
T Consensus 12 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~----~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~-~~g~~~~~~~g~~ 86 (96)
T cd02956 12 QVPVVVDFWAPRSPPSKELLPLLERLAE----EYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLF-AAGQPVDGFQGAQ 86 (96)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHH----HhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEE-eCCEEeeeecCCC
Confidence 4567899999999999999999988741 0112467889999999999999997 69999854 688764 33667
Q ss_pred CHHHHHHHHH
Q 030511 123 NRFRIEAWLS 132 (176)
Q Consensus 123 d~deL~~~L~ 132 (176)
+.++|..+|+
T Consensus 87 ~~~~l~~~l~ 96 (96)
T cd02956 87 PEEQLRQMLD 96 (96)
T ss_pred CHHHHHHHhC
Confidence 8889888763
No 47
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.72 E-value=1.3e-07 Score=71.30 Aligned_cols=67 Identities=12% Similarity=0.218 Sum_probs=56.4
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCeEEEe
Q 030511 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVLM 119 (176)
Q Consensus 47 ~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe~l~~ 119 (176)
..-+..|+.|||+.|..++..|+++. .+..++.+..||+++++++.++|+. .+|+++ .+.+|+.+..
T Consensus 23 ~~vvV~f~a~~c~~C~~~~p~l~~la-----~~~~~i~f~~Vd~~~~~~l~~~~~v~~vPt~l-~fk~G~~v~~ 90 (113)
T cd02989 23 ERVVCHFYHPEFFRCKIMDKHLEILA-----KKHLETKFIKVNAEKAPFLVEKLNIKVLPTVI-LFKNGKTVDR 90 (113)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHH-----HHcCCCEEEEEEcccCHHHHHHCCCccCCEEE-EEECCEEEEE
Confidence 56788999999999999999999974 2344789999999999999999997 699997 4588986643
No 48
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.72 E-value=1.7e-07 Score=68.78 Aligned_cols=84 Identities=11% Similarity=0.036 Sum_probs=66.4
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCH---HHHHhcCC-ccceeEEeccCCeEEEe-c
Q 030511 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP---EWEKSYQY-EIPVLARVLSDGTEVLM-A 120 (176)
Q Consensus 46 ~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~---el~eky~~-~VPVL~i~~idGe~l~~-~ 120 (176)
..+-|..|+.+||+.|......|+++. .+..++.|-.+|+|+++ ++.++|+. .+|+++. +.||+.+.. .
T Consensus 15 ~k~vvv~F~a~wC~~C~~~~p~l~~la-----~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~-~~~G~~v~~~~ 88 (103)
T cd02985 15 GRLVVLEFALKHSGPSVKIYPTMVKLS-----RTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLF-YKDGEKIHEEE 88 (103)
T ss_pred CCEEEEEEECCCCHhHHHHhHHHHHHH-----HHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEE-EeCCeEEEEEe
Confidence 556799999999999999999999874 22347889999999885 78889997 5999763 478886533 5
Q ss_pred cCCHHHHHHHHHhCC
Q 030511 121 CINRFRIEAWLSQMS 135 (176)
Q Consensus 121 ~fd~deL~~~L~~~~ 135 (176)
+.++++|.+.+...|
T Consensus 89 G~~~~~l~~~~~~~~ 103 (103)
T cd02985 89 GIGPDELIGDVLYYG 103 (103)
T ss_pred CCCHHHHHHHHHhcC
Confidence 788899888776543
No 49
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.69 E-value=1.6e-07 Score=68.65 Aligned_cols=83 Identities=11% Similarity=0.047 Sum_probs=64.5
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCeEEEe-ccCC
Q 030511 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVLM-ACIN 123 (176)
Q Consensus 46 ~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe~l~~-~~fd 123 (176)
..+-+..|+.+||+.|......++++.. ......+.+..+|+| ++++.++|+. .+|++++ +.||+.+.. .+.+
T Consensus 17 ~~~vvv~F~a~wC~~Ck~~~p~l~~~~~---~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~-~~~g~~~~~~~G~~ 91 (102)
T cd02948 17 KGLTVVDVYQEWCGPCKAVVSLFKKIKN---ELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLF-YKNGELVAVIRGAN 91 (102)
T ss_pred CCeEEEEEECCcCHhHHHHhHHHHHHHH---HcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEE-EECCEEEEEEecCC
Confidence 4567899999999999999999988741 112234778999999 7888999997 5998874 478886533 5679
Q ss_pred HHHHHHHHHh
Q 030511 124 RFRIEAWLSQ 133 (176)
Q Consensus 124 ~deL~~~L~~ 133 (176)
+++|.+++.+
T Consensus 92 ~~~~~~~i~~ 101 (102)
T cd02948 92 APLLNKTITE 101 (102)
T ss_pred hHHHHHHHhh
Confidence 9999998865
No 50
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.69 E-value=9.1e-08 Score=73.67 Aligned_cols=96 Identities=10% Similarity=0.078 Sum_probs=71.2
Q ss_pred ccceeccccccccCCCCCCCCceEEEEeCCC--CCchHHHHHHHHHHhccCCCCCCCC-cceEEEEcCCCHHHHHhcCC-
Q 030511 27 SRWGFSPLAYSSSSSSSSSSTRKLVLYSKPG--CCLCDGLKEKLQAAFLLSGPDSLHD-VDLQVRDITTNPEWEKSYQY- 102 (176)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~kItLYTkpg--C~lCe~aKe~Le~l~~~~~~~~~~g-ie~eeIDIdeD~el~eky~~- 102 (176)
.++++-.+...|--..-......|..|+.+| ||.|..++..|+++. .++.+ +.+-.+|+++++++..+|+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela-----~e~~~~v~f~kVdid~~~~la~~f~V~ 82 (111)
T cd02965 8 TRHGWPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELL-----KAFPGRFRAAVVGRADEQALAARFGVL 82 (111)
T ss_pred HhcCCcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHH-----HHCCCcEEEEEEECCCCHHHHHHcCCC
Confidence 3445555555544433356678899999996 999999999999985 22333 67889999999999999998
Q ss_pred ccceeEEeccCCeEEEe--ccCCHHHHH
Q 030511 103 EIPVLARVLSDGTEVLM--ACINRFRIE 128 (176)
Q Consensus 103 ~VPVL~i~~idGe~l~~--~~fd~deL~ 128 (176)
+||+++ .+.||+.+.. |..+.+++.
T Consensus 83 sIPTli-~fkdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 83 RTPALL-FFRDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred cCCEEE-EEECCEEEEEEeCccCHHHHh
Confidence 599997 4689987644 555666553
No 51
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.67 E-value=1.8e-07 Score=66.21 Aligned_cols=80 Identities=13% Similarity=0.174 Sum_probs=64.8
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhccCCCCC-CCCcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCeEEEe-ccC
Q 030511 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDS-LHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVLM-ACI 122 (176)
Q Consensus 46 ~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~-~~gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe~l~~-~~f 122 (176)
...-+..|+++||+.|..++..|+++.. . ...+.+-.+|+++++++.++|+. .+|++++ +.+|+.+.. .++
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~-----~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~-~~~g~~~~~~~g~ 87 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAK-----EAFPSVLFLSIEAEELPEISEKFEITAVPTFVF-FRNGTIVDRVSGA 87 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHH-----HhCCceEEEEEccccCHHHHHhcCCccccEEEE-EECCEEEEEEeCC
Confidence 4566888999999999999999998742 2 33788889999999999999997 5999874 478887655 578
Q ss_pred CHHHHHHHH
Q 030511 123 NRFRIEAWL 131 (176)
Q Consensus 123 d~deL~~~L 131 (176)
+.++|.+.+
T Consensus 88 ~~~~l~~~~ 96 (97)
T cd02984 88 DPKELAKKV 96 (97)
T ss_pred CHHHHHHhh
Confidence 888888765
No 52
>PRK10996 thioredoxin 2; Provisional
Probab=98.67 E-value=2.5e-07 Score=71.90 Aligned_cols=84 Identities=14% Similarity=0.327 Sum_probs=67.2
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCeEEEe--ccC
Q 030511 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVLM--ACI 122 (176)
Q Consensus 46 ~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe~l~~--~~f 122 (176)
....+..|+++||+.|......++++.. ....++.+-.+|+++++++.++|+. .+|++++ +.+|+.+.. |..
T Consensus 52 ~k~vvv~F~a~wC~~C~~~~~~l~~l~~----~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii-~~~G~~v~~~~G~~ 126 (139)
T PRK10996 52 DLPVVIDFWAPWCGPCRNFAPIFEDVAA----ERSGKVRFVKVNTEAERELSARFRIRSIPTIMI-FKNGQVVDMLNGAV 126 (139)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHH----HhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEE-EECCEEEEEEcCCC
Confidence 3557899999999999999999988742 1123678889999999999999997 6999874 578986543 668
Q ss_pred CHHHHHHHHHhC
Q 030511 123 NRFRIEAWLSQM 134 (176)
Q Consensus 123 d~deL~~~L~~~ 134 (176)
++++|.++|.++
T Consensus 127 ~~e~l~~~l~~~ 138 (139)
T PRK10996 127 PKAPFDSWLNEA 138 (139)
T ss_pred CHHHHHHHHHHh
Confidence 889999998753
No 53
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.67 E-value=2.1e-07 Score=66.74 Aligned_cols=81 Identities=12% Similarity=0.225 Sum_probs=64.6
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCeEE-EeccCCHHH
Q 030511 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEV-LMACINRFR 126 (176)
Q Consensus 49 kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe~l-~~~~fd~de 126 (176)
.+..|+.+||+.|......++++.. .....++.+-.+|+++++++.++|+. .+|+++. +.+|+.. +.|..+.++
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~---~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~-~~~g~~~~~~G~~~~~~ 94 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFAD---WSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYH-AKDGVFRRYQGPRDKED 94 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHH---hhccCCeEEEEEEccCCHhHHHHcCCcccCEEEE-eCCCCEEEecCCCCHHH
Confidence 5899999999999999999998742 11223688899999999999999997 5999985 4788742 336788888
Q ss_pred HHHHHHh
Q 030511 127 IEAWLSQ 133 (176)
Q Consensus 127 L~~~L~~ 133 (176)
|.+++.+
T Consensus 95 l~~~i~~ 101 (101)
T cd02994 95 LISFIEE 101 (101)
T ss_pred HHHHHhC
Confidence 9888753
No 54
>PTZ00051 thioredoxin; Provisional
Probab=98.66 E-value=1.7e-07 Score=66.60 Aligned_cols=78 Identities=12% Similarity=0.142 Sum_probs=62.6
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCeEEEe-ccCC
Q 030511 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVLM-ACIN 123 (176)
Q Consensus 46 ~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe~l~~-~~fd 123 (176)
...-+..|+.+||+.|......++++. ....++.+..+|++++.++.++|+. .+|++++ +.+|+.+.. .+.+
T Consensus 18 ~~~vli~f~~~~C~~C~~~~~~l~~l~-----~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~-~~~g~~~~~~~G~~ 91 (98)
T PTZ00051 18 NELVIVDFYAEWCGPCKRIAPFYEECS-----KEYTKMVFVKVDVDELSEVAEKENITSMPTFKV-FKNGSVVDTLLGAN 91 (98)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHH-----HHcCCcEEEEEECcchHHHHHHCCCceeeEEEE-EeCCeEEEEEeCCC
Confidence 346688999999999999999999874 2233688999999999999999997 6999874 478886543 5678
Q ss_pred HHHHHH
Q 030511 124 RFRIEA 129 (176)
Q Consensus 124 ~deL~~ 129 (176)
.++|++
T Consensus 92 ~~~~~~ 97 (98)
T PTZ00051 92 DEALKQ 97 (98)
T ss_pred HHHhhc
Confidence 888865
No 55
>PRK09381 trxA thioredoxin; Provisional
Probab=98.65 E-value=3.8e-07 Score=66.44 Aligned_cols=84 Identities=17% Similarity=0.226 Sum_probs=66.2
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCeEEEe--ccC
Q 030511 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVLM--ACI 122 (176)
Q Consensus 46 ~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe~l~~--~~f 122 (176)
....+..|+.+||+.|..+...++++.. . .. .++.+-.+|++.++.+.++|+. .+|++++ +.+|+.... |..
T Consensus 21 ~~~vvv~f~~~~C~~C~~~~p~~~~l~~--~-~~-~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~-~~~G~~~~~~~G~~ 95 (109)
T PRK09381 21 DGAILVDFWAEWCGPCKMIAPILDEIAD--E-YQ-GKLTVAKLNIDQNPGTAPKYGIRGIPTLLL-FKNGEVAATKVGAL 95 (109)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHH--H-hC-CCcEEEEEECCCChhHHHhCCCCcCCEEEE-EeCCeEEEEecCCC
Confidence 4467899999999999999999988742 0 11 2578899999999999999997 6999874 378886533 667
Q ss_pred CHHHHHHHHHhC
Q 030511 123 NRFRIEAWLSQM 134 (176)
Q Consensus 123 d~deL~~~L~~~ 134 (176)
+.++|.+++.+.
T Consensus 96 ~~~~l~~~i~~~ 107 (109)
T PRK09381 96 SKGQLKEFLDAN 107 (109)
T ss_pred CHHHHHHHHHHh
Confidence 888888888754
No 56
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.64 E-value=2.3e-07 Score=65.36 Aligned_cols=86 Identities=16% Similarity=0.197 Sum_probs=65.0
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCC-CcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCe-E-EEec
Q 030511 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLH-DVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGT-E-VLMA 120 (176)
Q Consensus 45 ~~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~-gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe-~-l~~~ 120 (176)
.....++.|+.+||+.|...+..++++.. . .... ++.+..+|+++++++.++|+. .+|.+++- .+|+ . .+.|
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~--~-~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~-~~~~~~~~~~g 87 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAK--E-LKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFF-PKGKKPVDYEG 87 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHH--H-hccCCceEEEEEEccchHHHHHhCCCCcCCEEEEe-cCCCcceeecC
Confidence 45667999999999999999998887641 0 1111 488999999999999999997 69999743 4444 2 3346
Q ss_pred cCCHHHHHHHHHhC
Q 030511 121 CINRFRIEAWLSQM 134 (176)
Q Consensus 121 ~fd~deL~~~L~~~ 134 (176)
..+.++|..++++.
T Consensus 88 ~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 88 GRDLEAIVEFVNEK 101 (102)
T ss_pred CCCHHHHHHHHHhc
Confidence 77889999988763
No 57
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.63 E-value=3.8e-07 Score=63.82 Aligned_cols=81 Identities=20% Similarity=0.345 Sum_probs=63.7
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhccCCCCCC-CCcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCeEE--EeccC
Q 030511 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSL-HDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEV--LMACI 122 (176)
Q Consensus 47 ~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~-~gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe~l--~~~~f 122 (176)
..-+..|+.+||+.|...++.++++.. .. .++.+-.+|+++++++.++|+. .+|++++- .+|+.. ..|..
T Consensus 15 ~~vvi~f~~~~C~~C~~~~~~l~~~~~-----~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~-~~g~~~~~~~g~~ 88 (101)
T TIGR01068 15 KPVLVDFWAPWCGPCKMIAPILEELAK-----EYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLF-KNGKEVDRSVGAL 88 (101)
T ss_pred CcEEEEEECCCCHHHHHhCHHHHHHHH-----HhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEE-eCCcEeeeecCCC
Confidence 456888889999999999999988741 22 2589999999999999999997 69998843 677653 23567
Q ss_pred CHHHHHHHHHh
Q 030511 123 NRFRIEAWLSQ 133 (176)
Q Consensus 123 d~deL~~~L~~ 133 (176)
+.++|.++|++
T Consensus 89 ~~~~l~~~l~~ 99 (101)
T TIGR01068 89 PKAALKQLINK 99 (101)
T ss_pred CHHHHHHHHHh
Confidence 77888888875
No 58
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.62 E-value=3.1e-07 Score=75.71 Aligned_cols=85 Identities=15% Similarity=0.361 Sum_probs=64.7
Q ss_pred CCCCceEEEEeC---CCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcC--CCHHHHHhcCC-ccceeEEeccCCeEE
Q 030511 44 SSSTRKLVLYSK---PGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--TNPEWEKSYQY-EIPVLARVLSDGTEV 117 (176)
Q Consensus 44 ~~~~~kItLYTk---pgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDId--eD~el~eky~~-~VPVL~i~~idGe~l 117 (176)
......|.+|+. +||+.|..++..++++. .+..++++..+|++ +++++.++|+. .+|++++ +.||+..
T Consensus 17 ~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la-----~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~-f~~g~~~ 90 (215)
T TIGR02187 17 LKNPVEIVVFTDNDKEGCQYCKETEQLLEELS-----EVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTII-LEEGKDG 90 (215)
T ss_pred cCCCeEEEEEcCCCCCCCCchHHHHHHHHHHH-----hhCCCceEEEEecCCcccHHHHHHcCCCccCEEEE-EeCCeee
Confidence 345667889988 99999999999999984 22335666677776 88999999997 6999984 4677764
Q ss_pred ---EeccCCHHHHHHHHHhC
Q 030511 118 ---LMACINRFRIEAWLSQM 134 (176)
Q Consensus 118 ---~~~~fd~deL~~~L~~~ 134 (176)
+.|..+.+++.++|...
T Consensus 91 ~~~~~G~~~~~~l~~~i~~~ 110 (215)
T TIGR02187 91 GIRYTGIPAGYEFAALIEDI 110 (215)
T ss_pred EEEEeecCCHHHHHHHHHHH
Confidence 23667888888887643
No 59
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.62 E-value=4.1e-07 Score=67.67 Aligned_cols=79 Identities=18% Similarity=0.227 Sum_probs=61.8
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCeEEEe-----
Q 030511 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVLM----- 119 (176)
Q Consensus 46 ~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe~l~~----- 119 (176)
..+-+..|+.|||+.|..++..|+++. .+..++.|-.+|++++ ++.++|+. .+|+++ .+.+|+.+..
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la-----~~~~~v~f~~vd~~~~-~l~~~~~i~~~Pt~~-~f~~G~~v~~~~G~~ 96 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELA-----AKYPETKFVKINAEKA-FLVNYLDIKVLPTLL-VYKNGELIDNIVGFE 96 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHH-----HHCCCcEEEEEEchhh-HHHHhcCCCcCCEEE-EEECCEEEEEEecHH
Confidence 356688999999999999999999875 2344688899999988 99999998 799987 4588987543
Q ss_pred ----ccCCHHHHHHHH
Q 030511 120 ----ACINRFRIEAWL 131 (176)
Q Consensus 120 ----~~fd~deL~~~L 131 (176)
-.|+.+.|+++|
T Consensus 97 ~~~~~~~~~~~l~~~l 112 (113)
T cd02957 97 ELGGDDFTTEDLEKFL 112 (113)
T ss_pred HhCCCCCCHHHHHHHh
Confidence 235666666655
No 60
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.59 E-value=1.2e-07 Score=68.67 Aligned_cols=82 Identities=16% Similarity=0.060 Sum_probs=58.3
Q ss_pred CceEEEEeCCCCCchHHHHHHH---HHHhccCCCCCCCCcceEEEEcCC----CHHHHHhcCC-ccceeEEecc-CCeEE
Q 030511 47 TRKLVLYSKPGCCLCDGLKEKL---QAAFLLSGPDSLHDVDLQVRDITT----NPEWEKSYQY-EIPVLARVLS-DGTEV 117 (176)
Q Consensus 47 ~~kItLYTkpgC~lCe~aKe~L---e~l~~~~~~~~~~gie~eeIDIde----D~el~eky~~-~VPVL~i~~i-dGe~l 117 (176)
.+-++.|+.+||+.|..++..+ +++.. .... ++.+-.+|+++ ++++.++|+. .+|++++-.. +|+..
T Consensus 12 k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~---~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~~~g~~~ 87 (104)
T cd02953 12 KPVFVDFTADWCVTCKVNEKVVFSDPEVQA---ALKK-DVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGPGGEPEP 87 (104)
T ss_pred CeEEEEEEcchhHHHHHHHHHhcCCHHHHH---HHhC-CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECCCCCCCC
Confidence 4568899999999999998765 22210 0111 68888899987 4678889997 6999985433 67643
Q ss_pred E--eccCCHHHHHHHHH
Q 030511 118 L--MACINRFRIEAWLS 132 (176)
Q Consensus 118 ~--~~~fd~deL~~~L~ 132 (176)
. -|..+.++|.++|+
T Consensus 88 ~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 88 LRLPGFLTADEFLEALE 104 (104)
T ss_pred cccccccCHHHHHHHhC
Confidence 2 36788888888763
No 61
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1.5e-07 Score=83.39 Aligned_cols=88 Identities=18% Similarity=0.295 Sum_probs=74.6
Q ss_pred CCCCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCC-CcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCeEE--Ee
Q 030511 44 SSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLH-DVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEV--LM 119 (176)
Q Consensus 44 ~~~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~-gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe~l--~~ 119 (176)
+...+-++.|+.|||+.|..+...|+++. .++. .|.+-.+|+|+++.....||. +||++. .|.||+.+ |.
T Consensus 41 S~~~PVlV~fWap~~~~c~qL~p~Lekla-----~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~-af~dGqpVdgF~ 114 (304)
T COG3118 41 SREVPVLVDFWAPWCGPCKQLTPTLEKLA-----AEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVY-AFKDGQPVDGFQ 114 (304)
T ss_pred ccCCCeEEEecCCCCchHHHHHHHHHHHH-----HHhCCceEEEEecCCcchhHHHHhCcCcCCeEE-EeeCCcCccccC
Confidence 34556799999999999999999999985 3343 689999999999999999997 699997 56999864 55
Q ss_pred ccCCHHHHHHHHHhCCch
Q 030511 120 ACINRFRIEAWLSQMSLD 137 (176)
Q Consensus 120 ~~fd~deL~~~L~~~~l~ 137 (176)
|..++++|++||.+..-.
T Consensus 115 G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 115 GAQPESQLRQFLDKVLPA 132 (304)
T ss_pred CCCcHHHHHHHHHHhcCh
Confidence 788999999999887665
No 62
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.57 E-value=5e-07 Score=63.05 Aligned_cols=69 Identities=19% Similarity=0.318 Sum_probs=51.6
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCH----HHHHhcCC-ccceeEEeccCCeEEEeccCCH
Q 030511 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP----EWEKSYQY-EIPVLARVLSDGTEVLMACINR 124 (176)
Q Consensus 50 ItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~----el~eky~~-~VPVL~i~~idGe~l~~~~fd~ 124 (176)
++||+.++|++|.+++..|+.+ |++|+++||+.++ ++.+..+. .||+|... .+|.. -++.
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~----------gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~-~~~~~----l~es 66 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTEL----------ELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDP-NTGVQ----MFES 66 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHc----------CCcEEEEECCCChHHHHHHHHhCCCCcccEEEeC-CCCeE----EEcH
Confidence 7899999999999999999887 9999999998653 23332233 69999721 12433 3588
Q ss_pred HHHHHHHHh
Q 030511 125 FRIEAWLSQ 133 (176)
Q Consensus 125 deL~~~L~~ 133 (176)
..|.++|.+
T Consensus 67 ~~I~~yL~~ 75 (77)
T cd03041 67 ADIVKYLFK 75 (77)
T ss_pred HHHHHHHHH
Confidence 888888875
No 63
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.54 E-value=5.5e-07 Score=69.67 Aligned_cols=84 Identities=10% Similarity=-0.007 Sum_probs=65.0
Q ss_pred CceEEEEeCCCCCc--hH--HHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCeEEEe-c
Q 030511 47 TRKLVLYSKPGCCL--CD--GLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVLM-A 120 (176)
Q Consensus 47 ~~kItLYTkpgC~l--Ce--~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe~l~~-~ 120 (176)
.+-|..|..+||+. |. .....|+++.. +..+..++.+-.+|+|+++++.++|+. .+|+++ .+.||+.+.+ |
T Consensus 28 ~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa--~~l~~~~v~~~kVD~d~~~~La~~~~I~~iPTl~-lfk~G~~v~~~G 104 (120)
T cd03065 28 VLCLLYHEPVESDKEAQKQFQMEELVLELAA--QVLEDKGIGFGLVDSKKDAKVAKKLGLDEEDSIY-VFKDDEVIEYDG 104 (120)
T ss_pred ceEEEEECCCcCChhhChhhcchhhHHHHHH--HHhhcCCCEEEEEeCCCCHHHHHHcCCccccEEE-EEECCEEEEeeC
Confidence 35688888888987 99 67766666541 111134799999999999999999998 599997 4689986666 6
Q ss_pred cCCHHHHHHHHHh
Q 030511 121 CINRFRIEAWLSQ 133 (176)
Q Consensus 121 ~fd~deL~~~L~~ 133 (176)
..+++.|.++|++
T Consensus 105 ~~~~~~l~~~l~~ 117 (120)
T cd03065 105 EFAADTLVEFLLD 117 (120)
T ss_pred CCCHHHHHHHHHH
Confidence 6799999999875
No 64
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=9.7e-07 Score=66.99 Aligned_cols=82 Identities=18% Similarity=0.258 Sum_probs=65.9
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCeEEEe-ccCCH
Q 030511 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVLM-ACINR 124 (176)
Q Consensus 47 ~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe~l~~-~~fd~ 124 (176)
..-|+.|+.+|||.|...+..+++++ .++.++.|-.+|+|++++...+|+. .+|+.+. +.+|+.+.. -+-++
T Consensus 22 kliVvdF~a~wCgPCk~i~P~~~~La-----~~y~~v~Flkvdvde~~~~~~~~~V~~~PTf~f-~k~g~~~~~~vGa~~ 95 (106)
T KOG0907|consen 22 KLVVVDFYATWCGPCKAIAPKFEKLA-----EKYPDVVFLKVDVDELEEVAKEFNVKAMPTFVF-YKGGEEVDEVVGANK 95 (106)
T ss_pred CeEEEEEECCCCcchhhhhhHHHHHH-----HHCCCCEEEEEecccCHhHHHhcCceEeeEEEE-EECCEEEEEEecCCH
Confidence 34477799999999999999999986 4555789999999999999999998 5899974 377775433 46777
Q ss_pred HHHHHHHHhC
Q 030511 125 FRIEAWLSQM 134 (176)
Q Consensus 125 deL~~~L~~~ 134 (176)
+++.+.+++.
T Consensus 96 ~~l~~~i~~~ 105 (106)
T KOG0907|consen 96 AELEKKIAKH 105 (106)
T ss_pred HHHHHHHHhc
Confidence 7888887654
No 65
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.51 E-value=7.1e-07 Score=64.33 Aligned_cols=79 Identities=15% Similarity=0.139 Sum_probs=59.7
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceeEEeccCC-eEEE-e-ccCC
Q 030511 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDG-TEVL-M-ACIN 123 (176)
Q Consensus 48 ~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~-~VPVL~i~~idG-e~l~-~-~~fd 123 (176)
+.+..|+.+||+.|..+...++++.. .-...+.+-.+|+++++++.++|+. .+|+++. +.+| +... + |..+
T Consensus 21 ~v~v~f~a~wC~~C~~~~p~~~~~~~----~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~-~~~g~~~~~~~~G~~~ 95 (104)
T cd03004 21 PWLVDFYAPWCGPCQALLPELRKAAR----ALKGKVKVGSVDCQKYESLCQQANIRAYPTIRL-YPGNASKYHSYNGWHR 95 (104)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHH----HhcCCcEEEEEECCchHHHHHHcCCCcccEEEE-EcCCCCCceEccCCCC
Confidence 67889999999999999999998752 1122578999999999999999997 6999874 3565 4322 2 4445
Q ss_pred -HHHHHHHH
Q 030511 124 -RFRIEAWL 131 (176)
Q Consensus 124 -~deL~~~L 131 (176)
.++|.+++
T Consensus 96 ~~~~l~~~i 104 (104)
T cd03004 96 DADSILEFI 104 (104)
T ss_pred CHHHHHhhC
Confidence 77777653
No 66
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.50 E-value=6.3e-07 Score=82.52 Aligned_cols=81 Identities=14% Similarity=0.121 Sum_probs=70.8
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCeEEEeccCC
Q 030511 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVLMACIN 123 (176)
Q Consensus 45 ~~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe~l~~~~fd 123 (176)
..+..|++|.+++||+|..+...++++.. ...+++.+.||..+.+++.++|++ .||.++ +||+.++.|..+
T Consensus 115 ~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~-----~~~~i~~~~id~~~~~~~~~~~~v~~VP~~~---i~~~~~~~g~~~ 186 (517)
T PRK15317 115 DGDFHFETYVSLSCHNCPDVVQALNLMAV-----LNPNITHTMIDGALFQDEVEARNIMAVPTVF---LNGEEFGQGRMT 186 (517)
T ss_pred CCCeEEEEEEcCCCCCcHHHHHHHHHHHH-----hCCCceEEEEEchhCHhHHHhcCCcccCEEE---ECCcEEEecCCC
Confidence 35668999999999999999999998852 234799999999999999999997 699999 799888888899
Q ss_pred HHHHHHHHHh
Q 030511 124 RFRIEAWLSQ 133 (176)
Q Consensus 124 ~deL~~~L~~ 133 (176)
.+++.+.+.+
T Consensus 187 ~~~~~~~~~~ 196 (517)
T PRK15317 187 LEEILAKLDT 196 (517)
T ss_pred HHHHHHHHhc
Confidence 9999998874
No 67
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.49 E-value=6.9e-07 Score=64.37 Aligned_cols=78 Identities=12% Similarity=0.094 Sum_probs=58.8
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCeEE--EeccCC
Q 030511 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEV--LMACIN 123 (176)
Q Consensus 47 ~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe~l--~~~~fd 123 (176)
..-+..|+.+||+.|..++..++++.. .. ...+.+-.+|+++++++.++|+. .+|++++ +.+|+.. +-|..+
T Consensus 19 ~~~~v~f~a~wC~~C~~~~p~~~~~a~---~~-~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~-~~~g~~~~~~~G~~~ 93 (101)
T cd03003 19 EIWFVNFYSPRCSHCHDLAPTWREFAK---EM-DGVIRIGAVNCGDDRMLCRSQGVNSYPSLYV-FPSGMNPEKYYGDRS 93 (101)
T ss_pred CeEEEEEECCCChHHHHhHHHHHHHHH---Hh-cCceEEEEEeCCccHHHHHHcCCCccCEEEE-EcCCCCcccCCCCCC
Confidence 457889999999999999999988752 01 12478889999999999999997 6999973 4677643 224566
Q ss_pred HHHHHH
Q 030511 124 RFRIEA 129 (176)
Q Consensus 124 ~deL~~ 129 (176)
.++|.+
T Consensus 94 ~~~l~~ 99 (101)
T cd03003 94 KESLVK 99 (101)
T ss_pred HHHHHh
Confidence 666554
No 68
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=98.47 E-value=1e-06 Score=60.66 Aligned_cols=70 Identities=21% Similarity=0.348 Sum_probs=50.2
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCC--HHHHHhcC-CccceeEEec-cCCeEEEeccCCH
Q 030511 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN--PEWEKSYQ-YEIPVLARVL-SDGTEVLMACINR 124 (176)
Q Consensus 49 kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD--~el~eky~-~~VPVL~i~~-idGe~l~~~~fd~ 124 (176)
+++||+.++|++|.+++.+|+.. |++|++++++.. +++ +.-+ -.||+|+... .+|+.+ .+.
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~----------gi~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~l----~eS 65 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYH----------GIPYEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQL----VDS 65 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHC----------CCceEEEECCchhHHHH-HHhCCCccCEEEECCCCCccEE----EcH
Confidence 58999999999999999999886 899999999742 233 2233 3699998210 025443 367
Q ss_pred HHHHHHHHh
Q 030511 125 FRIEAWLSQ 133 (176)
Q Consensus 125 deL~~~L~~ 133 (176)
..|.++|.+
T Consensus 66 ~~I~~yL~~ 74 (77)
T cd03040 66 SVIISTLKT 74 (77)
T ss_pred HHHHHHHHH
Confidence 777777764
No 69
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.46 E-value=6.9e-07 Score=61.59 Aligned_cols=79 Identities=18% Similarity=0.179 Sum_probs=58.5
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhccCCCCC-CCCcceEEEEcCCCHHHHHhcCC-ccceeEEeccCC-eEE--EeccC
Q 030511 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDS-LHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDG-TEV--LMACI 122 (176)
Q Consensus 48 ~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~-~~gie~eeIDIdeD~el~eky~~-~VPVL~i~~idG-e~l--~~~~f 122 (176)
..+++|+++||+.|..+...++.... ... ..++.+-.+|.++++++.++|+. .+|.++.- .+| ... +.|..
T Consensus 17 ~~~v~f~~~~C~~C~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~-~~~~~~~~~~~g~~ 92 (101)
T cd02961 17 DVLVEFYAPWCGHCKALAPEYEKLAK---ELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLF-PNGSKEPVKYEGPR 92 (101)
T ss_pred cEEEEEECCCCHHHHhhhHHHHHHHH---HhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEE-cCCCcccccCCCCc
Confidence 77999999999999999999988642 111 24788999999999999999997 68999853 334 221 22445
Q ss_pred CHHHHHHH
Q 030511 123 NRFRIEAW 130 (176)
Q Consensus 123 d~deL~~~ 130 (176)
+.++|.++
T Consensus 93 ~~~~i~~~ 100 (101)
T cd02961 93 TLESLVEF 100 (101)
T ss_pred CHHHHHhh
Confidence 66666654
No 70
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.44 E-value=1.6e-06 Score=70.41 Aligned_cols=82 Identities=17% Similarity=0.216 Sum_probs=63.7
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCeEEEe------
Q 030511 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVLM------ 119 (176)
Q Consensus 47 ~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe~l~~------ 119 (176)
..-|..|+.+||+.|..+...|+.++ ..+..+.|-.||++++ ++..+|+. .+|+++ .+.||+.+..
T Consensus 84 ~~VVV~Fya~wc~~Ck~m~~~l~~LA-----~~~~~vkF~kVd~d~~-~l~~~f~v~~vPTll-lyk~G~~v~~~vG~~~ 156 (175)
T cd02987 84 TTVVVHIYEPGIPGCAALNSSLLCLA-----AEYPAVKFCKIRASAT-GASDEFDTDALPALL-VYKGGELIGNFVRVTE 156 (175)
T ss_pred cEEEEEEECCCCchHHHHHHHHHHHH-----HHCCCeEEEEEeccch-hhHHhCCCCCCCEEE-EEECCEEEEEEechHH
Confidence 36688899999999999999999985 2334688999999987 88899997 699998 4588886532
Q ss_pred ---ccCCHHHHHHHHHhCC
Q 030511 120 ---ACINRFRIEAWLSQMS 135 (176)
Q Consensus 120 ---~~fd~deL~~~L~~~~ 135 (176)
..|+.+.|+.+|.+.|
T Consensus 157 ~~g~~f~~~~le~~L~~~g 175 (175)
T cd02987 157 DLGEDFDAEDLESFLVEYG 175 (175)
T ss_pred hcCCCCCHHHHHHHHHhcC
Confidence 2467777777776644
No 71
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=98.44 E-value=1.2e-06 Score=56.29 Aligned_cols=65 Identities=20% Similarity=0.303 Sum_probs=47.1
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCH----HHHHhcCC-ccceeEEeccCCeEEEeccCCH
Q 030511 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP----EWEKSYQY-EIPVLARVLSDGTEVLMACINR 124 (176)
Q Consensus 50 ItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~----el~eky~~-~VPVL~i~~idGe~l~~~~fd~ 124 (176)
.+||+.++|++|..++..|+.. +++|+.++++.++ ++.+.... .+|+|. .+|..++ +.
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~----------~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~---~~~~~~~----es 63 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEK----------GLPYELVPVDLGEGEQEEFLALNPLGKVPVLE---DGGLVLT----ES 63 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHc----------CCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEE---ECCEEEE----cH
Confidence 3799999999999999999886 7888888887432 13444444 699998 6776543 44
Q ss_pred HHHHHHH
Q 030511 125 FRIEAWL 131 (176)
Q Consensus 125 deL~~~L 131 (176)
..|.++|
T Consensus 64 ~~I~~yl 70 (71)
T cd00570 64 LAILEYL 70 (71)
T ss_pred HHHHHHh
Confidence 5555554
No 72
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.43 E-value=1.3e-06 Score=66.57 Aligned_cols=80 Identities=13% Similarity=0.095 Sum_probs=62.6
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCC-CcceEEEEcCCCHHHH-HhcCC-ccceeEEeccCCeE--EEe
Q 030511 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLH-DVDLQVRDITTNPEWE-KSYQY-EIPVLARVLSDGTE--VLM 119 (176)
Q Consensus 45 ~~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~-gie~eeIDIdeD~el~-eky~~-~VPVL~i~~idGe~--l~~ 119 (176)
.....+..|..|||+.|..++..++++.. ... .+.+-.||+++++++. ++|+. .+|++.. +.+|+. .+.
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~-----~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl~l-f~~g~~~~~y~ 101 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQ-----KLSDQVLFVAINCWWPQGKCRKQKHFFYFPVIHL-YYRSRGPIEYK 101 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHH-----HhcCCeEEEEEECCCChHHHHHhcCCcccCEEEE-EECCccceEEe
Confidence 34557899999999999999999998742 122 3788999999999988 58996 7999973 478763 444
Q ss_pred ccCCHHHHHHH
Q 030511 120 ACINRFRIEAW 130 (176)
Q Consensus 120 ~~fd~deL~~~ 130 (176)
|..+.+.|..+
T Consensus 102 G~~~~~~i~~~ 112 (113)
T cd03006 102 GPMRAPYMEKF 112 (113)
T ss_pred CCCCHHHHHhh
Confidence 78888888765
No 73
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.43 E-value=1.7e-06 Score=63.66 Aligned_cols=80 Identities=10% Similarity=0.150 Sum_probs=61.0
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcC-CCHHHHHhcCC-ccceeEEeccCCeE-EEecc
Q 030511 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT-TNPEWEKSYQY-EIPVLARVLSDGTE-VLMAC 121 (176)
Q Consensus 45 ~~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDId-eD~el~eky~~-~VPVL~i~~idGe~-l~~~~ 121 (176)
...+.++.|+.+||+.|......++++. ....++.+-.+|.+ +++++.++|+. .+|++++ +.+|.. .+.|.
T Consensus 17 ~g~~vlV~F~a~WC~~C~~~~p~l~~la-----~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~l-f~~g~~~~~~G~ 90 (100)
T cd02999 17 REDYTAVLFYASWCPFSASFRPHFNALS-----SMFPQIRHLAIEESSIKPSLLSRYGVVGFPTILL-FNSTPRVRYNGT 90 (100)
T ss_pred CCCEEEEEEECCCCHHHHhHhHHHHHHH-----HHhccCceEEEECCCCCHHHHHhcCCeecCEEEE-EcCCceeEecCC
Confidence 3456799999999999999999999975 22346778888998 78999999997 6999874 355532 23366
Q ss_pred CCHHHHHHH
Q 030511 122 INRFRIEAW 130 (176)
Q Consensus 122 fd~deL~~~ 130 (176)
.+.++|.++
T Consensus 91 ~~~~~l~~f 99 (100)
T cd02999 91 RTLDSLAAF 99 (100)
T ss_pred CCHHHHHhh
Confidence 777777665
No 74
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.42 E-value=1.3e-06 Score=80.55 Aligned_cols=82 Identities=11% Similarity=0.102 Sum_probs=70.7
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCeEEEeccCC
Q 030511 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVLMACIN 123 (176)
Q Consensus 45 ~~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe~l~~~~fd 123 (176)
..+.+|++|.+++||+|..+...++.+. ....+++.+.+|..+.+++.++|++ .||.++ +||+.++.|..+
T Consensus 116 ~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a-----~~~p~i~~~~id~~~~~~~~~~~~v~~VP~~~---i~~~~~~~g~~~ 187 (515)
T TIGR03140 116 NGPLHFETYVSLTCQNCPDVVQALNQMA-----LLNPNISHTMIDGALFQDEVEALGIQGVPAVF---LNGEEFHNGRMD 187 (515)
T ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHH-----HhCCCceEEEEEchhCHHHHHhcCCcccCEEE---ECCcEEEecCCC
Confidence 3566899999999999999999998875 2334799999999999999999997 699999 799888888899
Q ss_pred HHHHHHHHHhC
Q 030511 124 RFRIEAWLSQM 134 (176)
Q Consensus 124 ~deL~~~L~~~ 134 (176)
.+++.+.+.+.
T Consensus 188 ~~~~~~~l~~~ 198 (515)
T TIGR03140 188 LAELLEKLEET 198 (515)
T ss_pred HHHHHHHHhhc
Confidence 99998887654
No 75
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.41 E-value=3.1e-06 Score=67.63 Aligned_cols=65 Identities=12% Similarity=0.179 Sum_probs=52.1
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCC-cceEEEEcCCCHHHHHhcCCc-cceeEEeccCCe
Q 030511 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHD-VDLQVRDITTNPEWEKSYQYE-IPVLARVLSDGT 115 (176)
Q Consensus 46 ~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~g-ie~eeIDIdeD~el~eky~~~-VPVL~i~~idGe 115 (176)
..+-|.-|+++||+.|....+.|+++.. +..+ ..+-.||||+++++.++|+.. +|.++.-+.+|+
T Consensus 23 ~~lVVvdF~A~WCgpCk~m~p~l~~la~-----~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g~ 89 (142)
T PLN00410 23 ERLVVIRFGHDWDETCMQMDEVLASVAE-----TIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNKH 89 (142)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHH-----HcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEECCe
Confidence 4467899999999999999999999852 2334 567899999999999999986 655543457887
No 76
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.41 E-value=1.9e-06 Score=64.48 Aligned_cols=84 Identities=23% Similarity=0.335 Sum_probs=59.4
Q ss_pred CceEEEEeCCCCCchHHHHHHHH---HHhccCCCCCCCCcceEEEEcCCC-------------HHHHHhcCC-ccceeEE
Q 030511 47 TRKLVLYSKPGCCLCDGLKEKLQ---AAFLLSGPDSLHDVDLQVRDITTN-------------PEWEKSYQY-EIPVLAR 109 (176)
Q Consensus 47 ~~kItLYTkpgC~lCe~aKe~Le---~l~~~~~~~~~~gie~eeIDIdeD-------------~el~eky~~-~VPVL~i 109 (176)
.+.++.|+.+||++|...++.+. .+.. .-..++.+..+|++++ .++..+|+. .+|+++.
T Consensus 15 k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~----~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~ 90 (125)
T cd02951 15 KPLLLLFSQPGCPYCDKLKRDYLNDPAVQA----YIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTVIF 90 (125)
T ss_pred CcEEEEEeCCCCHHHHHHHHHhcCcHHHHH----HHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEEEE
Confidence 46788999999999999988663 2210 0012677888999865 578889996 6999885
Q ss_pred eccC-CeEEEe--ccCCHHHHHHHHHhC
Q 030511 110 VLSD-GTEVLM--ACINRFRIEAWLSQM 134 (176)
Q Consensus 110 ~~id-Ge~l~~--~~fd~deL~~~L~~~ 134 (176)
...+ |+.+.. |..+.+++.++|+..
T Consensus 91 ~~~~gg~~~~~~~G~~~~~~~~~~l~~~ 118 (125)
T cd02951 91 LDPEGGKEIARLPGYLPPDEFLAYLEYV 118 (125)
T ss_pred EcCCCCceeEEecCCCCHHHHHHHHHHH
Confidence 5445 565433 567788888887753
No 77
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.40 E-value=9.9e-07 Score=62.59 Aligned_cols=81 Identities=19% Similarity=0.253 Sum_probs=60.8
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhccCCCCC-CCCcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCeEE--EeccCC
Q 030511 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDS-LHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEV--LMACIN 123 (176)
Q Consensus 48 ~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~-~~gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe~l--~~~~fd 123 (176)
..+..|+.+||+.|...+..++++.. .... ...+.+-.+|.++++++.++|+. .+|++++- .+|+.. +.|..+
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~--~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~G~~~ 94 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAK--KFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLF-KDGEKVDKYKGTRD 94 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHH--HHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEE-eCCCeeeEeeCCCC
Confidence 37889999999999999999887641 0011 12578889999999999999997 59998743 677654 346777
Q ss_pred HHHHHHHH
Q 030511 124 RFRIEAWL 131 (176)
Q Consensus 124 ~deL~~~L 131 (176)
.++|.+++
T Consensus 95 ~~~l~~~i 102 (102)
T cd03005 95 LDSLKEFV 102 (102)
T ss_pred HHHHHhhC
Confidence 77777653
No 78
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.40 E-value=2.9e-06 Score=66.37 Aligned_cols=83 Identities=13% Similarity=0.178 Sum_probs=61.9
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCC-CCcceEEEEcCCC--HHHHHhcCC-ccceeEEeccCCeEEEe--
Q 030511 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSL-HDVDLQVRDITTN--PEWEKSYQY-EIPVLARVLSDGTEVLM-- 119 (176)
Q Consensus 46 ~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~-~gie~eeIDIdeD--~el~eky~~-~VPVL~i~~idGe~l~~-- 119 (176)
..+-|+.|+.+||+.|......++++.. .. ..+.|..+|++.+ +++.++|+. .+|.+++...+|+.+..
T Consensus 20 gk~vvV~F~A~WC~~C~~~~p~l~~l~~-----~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v~~~~ 94 (142)
T cd02950 20 GKPTLVEFYADWCTVCQEMAPDVAKLKQ-----KYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEEGQSI 94 (142)
T ss_pred CCEEEEEEECCcCHHHHHhHHHHHHHHH-----HhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEEEEEe
Confidence 4457889999999999999999988741 11 2477888999865 478889997 69999853347876543
Q ss_pred ccCCHHHHHHHHHh
Q 030511 120 ACINRFRIEAWLSQ 133 (176)
Q Consensus 120 ~~fd~deL~~~L~~ 133 (176)
|..+.++|.++|++
T Consensus 95 G~~~~~~l~~~l~~ 108 (142)
T cd02950 95 GLQPKQVLAQNLDA 108 (142)
T ss_pred CCCCHHHHHHHHHH
Confidence 66677877777654
No 79
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.39 E-value=1.7e-06 Score=61.44 Aligned_cols=81 Identities=19% Similarity=0.249 Sum_probs=60.1
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCC--CHHHHHhcCC-ccceeEEeccCCeEE--EeccC
Q 030511 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT--NPEWEKSYQY-EIPVLARVLSDGTEV--LMACI 122 (176)
Q Consensus 48 ~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIde--D~el~eky~~-~VPVL~i~~idGe~l--~~~~f 122 (176)
..+..|+.+||+.|......++.+.. .......+.+-.+|+++ ++++..+|+. .+|.++. +.+|+.. ..|..
T Consensus 19 ~~~v~f~a~wC~~C~~~~~~~~~~~~--~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~-~~~g~~~~~~~g~~ 95 (104)
T cd02997 19 HVLVMFYAPWCGHCKKMKPEFTKAAT--ELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKY-FENGKFVEKYEGER 95 (104)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHH--HHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEE-EeCCCeeEEeCCCC
Confidence 66899999999999999988877641 11112357788889988 8899999998 7999874 4677743 23667
Q ss_pred CHHHHHHHH
Q 030511 123 NRFRIEAWL 131 (176)
Q Consensus 123 d~deL~~~L 131 (176)
+.++|.++|
T Consensus 96 ~~~~l~~~l 104 (104)
T cd02997 96 TAEDIIEFM 104 (104)
T ss_pred CHHHHHhhC
Confidence 777777664
No 80
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.39 E-value=3.6e-06 Score=59.78 Aligned_cols=80 Identities=16% Similarity=0.159 Sum_probs=60.3
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCeE---EEeccC
Q 030511 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTE---VLMACI 122 (176)
Q Consensus 47 ~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe~---l~~~~f 122 (176)
.+-+.+|+.+||+.|...+..++++.. .-...+.+-.+|+++++++.++|+. .+|++++ +.+|+. .+.|+.
T Consensus 19 ~~vlv~f~a~~C~~C~~~~~~~~~~~~----~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~-~~~~~~~~~~~~g~~ 93 (103)
T cd03001 19 DVWLVEFYAPWCGHCKNLAPEWKKAAK----ALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKV-FGAGKNSPQDYQGGR 93 (103)
T ss_pred CcEEEEEECCCCHHHHHHhHHHHHHHH----HhcCCceEEEEECcchHHHHHHCCCCccCEEEE-ECCCCcceeecCCCC
Confidence 346888889999999999999988641 1112578899999999999999997 6999874 356622 233677
Q ss_pred CHHHHHHHH
Q 030511 123 NRFRIEAWL 131 (176)
Q Consensus 123 d~deL~~~L 131 (176)
+.++|.+|+
T Consensus 94 ~~~~l~~~~ 102 (103)
T cd03001 94 TAKAIVSAA 102 (103)
T ss_pred CHHHHHHHh
Confidence 888887765
No 81
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.37 E-value=2.8e-06 Score=61.76 Aligned_cols=85 Identities=14% Similarity=0.104 Sum_probs=63.3
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhccCCCC-CCCCcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCeEE-EeccC
Q 030511 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPD-SLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEV-LMACI 122 (176)
Q Consensus 46 ~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~-~~~gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe~l-~~~~f 122 (176)
..+-++.|+.+||+.|......++++.. ... ...++.+..+|+++++++.++|+. .+|++++- .+|... ..|..
T Consensus 15 ~~~vlv~f~a~wC~~C~~~~p~l~~l~~--~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~-~~~~~~~~~G~~ 91 (104)
T cd03000 15 EDIWLVDFYAPWCGHCKKLEPVWNEVGA--ELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLL-KGDLAYNYRGPR 91 (104)
T ss_pred CCeEEEEEECCCCHHHHhhChHHHHHHH--HHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEE-cCCCceeecCCC
Confidence 4567999999999999999999988641 000 012477888999999999999997 69999852 455433 33668
Q ss_pred CHHHHHHHHHh
Q 030511 123 NRFRIEAWLSQ 133 (176)
Q Consensus 123 d~deL~~~L~~ 133 (176)
+.++|.+++++
T Consensus 92 ~~~~l~~~~~~ 102 (104)
T cd03000 92 TKDDIVEFANR 102 (104)
T ss_pred CHHHHHHHHHh
Confidence 88999888875
No 82
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.37 E-value=1.7e-06 Score=63.18 Aligned_cols=84 Identities=13% Similarity=0.108 Sum_probs=59.9
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhc-cCCCCCC-CCcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCeE---EEec
Q 030511 47 TRKLVLYSKPGCCLCDGLKEKLQAAFL-LSGPDSL-HDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTE---VLMA 120 (176)
Q Consensus 47 ~~kItLYTkpgC~lCe~aKe~Le~l~~-~~~~~~~-~gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe~---l~~~ 120 (176)
...++.|..|||+.|...+..++++.. +.+.... ..+.+-.+|+++++++.++|+. .+|++.. +.+|+. .+.|
T Consensus 19 ~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Ptl~~-~~~g~~~~~~~~g 97 (108)
T cd02996 19 ELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPTLKL-FRNGMMMKREYRG 97 (108)
T ss_pred CEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCEEEE-EeCCcCcceecCC
Confidence 346889999999999999999987631 0000011 2478889999999999999997 6999974 478872 2225
Q ss_pred cCCHHHHHHHH
Q 030511 121 CINRFRIEAWL 131 (176)
Q Consensus 121 ~fd~deL~~~L 131 (176)
.-+.++|.+++
T Consensus 98 ~~~~~~l~~fi 108 (108)
T cd02996 98 QRSVEALAEFV 108 (108)
T ss_pred CCCHHHHHhhC
Confidence 55666666653
No 83
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=98.31 E-value=5.8e-06 Score=55.81 Aligned_cols=67 Identities=18% Similarity=0.327 Sum_probs=49.2
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCC--C-HHHHHhcCC-ccceeEEeccCCeEEEeccCCHH
Q 030511 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT--N-PEWEKSYQY-EIPVLARVLSDGTEVLMACINRF 125 (176)
Q Consensus 50 ItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIde--D-~el~eky~~-~VPVL~i~~idGe~l~~~~fd~d 125 (176)
++||+.++|++|..++..|+.. |++|+.++|+. . +++.+.... .||++. .+|..+ ++..
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~----------gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~---~~~~~l----~es~ 63 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEK----------GVSVEIIDVDPDNPPEDLAELNPYGTVPTLV---DRDLVL----YESR 63 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHc----------CCccEEEEcCCCCCCHHHHhhCCCCCCCEEE---ECCEEE----EcHH
Confidence 4799999999999999999886 88888887773 2 334433333 699997 566543 4677
Q ss_pred HHHHHHHh
Q 030511 126 RIEAWLSQ 133 (176)
Q Consensus 126 eL~~~L~~ 133 (176)
.|.++|.+
T Consensus 64 aI~~yL~~ 71 (73)
T cd03059 64 IIMEYLDE 71 (73)
T ss_pred HHHHHHHh
Confidence 77777764
No 84
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.30 E-value=4e-06 Score=67.20 Aligned_cols=69 Identities=16% Similarity=0.227 Sum_probs=55.8
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-c------cceeEEeccCCeEEE
Q 030511 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-E------IPVLARVLSDGTEVL 118 (176)
Q Consensus 46 ~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~-~------VPVL~i~~idGe~l~ 118 (176)
...-+..|+.+||+.|..+...++++.. .....++.+-.||+++++++.++|+. . +|+++ .+.||+++.
T Consensus 47 ~~~vvV~Fya~wC~~Ck~l~p~l~~la~---~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~i-lf~~Gk~v~ 122 (152)
T cd02962 47 RVTWLVEFFTTWSPECVNFAPVFAELSL---KYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTII-LFQGGKEVA 122 (152)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHH---HcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEE-EEECCEEEE
Confidence 4456999999999999999999998742 11223689999999999999999996 3 89987 468998764
No 85
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.29 E-value=1.6e-06 Score=62.94 Aligned_cols=85 Identities=18% Similarity=0.264 Sum_probs=54.8
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCH--------------------HHHHhcCC-cc
Q 030511 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP--------------------EWEKSYQY-EI 104 (176)
Q Consensus 46 ~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~--------------------el~eky~~-~V 104 (176)
..+.|.+|+.|||++|..+.+.+.+...+.. .-..++.+..+|++.+. ++..+|+. ..
T Consensus 5 ~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gt 83 (112)
T PF13098_consen 5 GKPIVVVFTDPWCPYCKKLEKELFPDNDVAR-YLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGT 83 (112)
T ss_dssp SSEEEEEEE-TT-HHHHHHHHHHHHHHHHHC-EEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SS
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHHH-HhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCcc
Confidence 4567999999999999999888875211000 00125777888887543 36677886 58
Q ss_pred ceeEEeccCCeEEE--eccCCHHHHHHHH
Q 030511 105 PVLARVLSDGTEVL--MACINRFRIEAWL 131 (176)
Q Consensus 105 PVL~i~~idGe~l~--~~~fd~deL~~~L 131 (176)
|++++...||+.+. .|..++++|.++|
T Consensus 84 Pt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 84 PTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred CEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 99996434588554 4888999998876
No 86
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.26 E-value=7.6e-06 Score=69.48 Aligned_cols=83 Identities=14% Similarity=0.159 Sum_probs=64.8
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCeEEEe--ccC
Q 030511 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVLM--ACI 122 (176)
Q Consensus 46 ~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe~l~~--~~f 122 (176)
..+.++.|+.|||+.|...+..++++.. . . ...+.+-.+|+++++++.++|+. .+|++++ +.+|+...+ |..
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~--~-~-~~~v~~~~VD~~~~~~l~~~~~I~~~PTl~~-f~~G~~v~~~~G~~ 126 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAK--A-L-KGQVNVADLDATRALNLAKRFAIKGYPTLLL-FDKGKMYQYEGGDR 126 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHH--H-c-CCCeEEEEecCcccHHHHHHcCCCcCCEEEE-EECCEEEEeeCCCC
Confidence 4567899999999999999999988742 0 1 12477888999999999999997 6999874 478887654 447
Q ss_pred CHHHHHHHHHh
Q 030511 123 NRFRIEAWLSQ 133 (176)
Q Consensus 123 d~deL~~~L~~ 133 (176)
+.++|.+++.+
T Consensus 127 s~e~L~~fi~~ 137 (224)
T PTZ00443 127 STEKLAAFALG 137 (224)
T ss_pred CHHHHHHHHHH
Confidence 88888887754
No 87
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=98.26 E-value=8.3e-07 Score=66.96 Aligned_cols=35 Identities=34% Similarity=0.609 Sum_probs=32.5
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCH
Q 030511 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP 94 (176)
Q Consensus 50 ItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~ 94 (176)
|+||+.++|+.|.+++++|++. |++|+++||.+++
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~----------~i~~~~idi~~~~ 35 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEH----------GVDYTAIDIVEEP 35 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHc----------CCceEEecccCCc
Confidence 6899999999999999999885 9999999999775
No 88
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.26 E-value=6.9e-06 Score=59.18 Aligned_cols=80 Identities=20% Similarity=0.173 Sum_probs=59.0
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCC--CHHHHHhcCC-ccceeEEeccCCe-------E
Q 030511 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT--NPEWEKSYQY-EIPVLARVLSDGT-------E 116 (176)
Q Consensus 47 ~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIde--D~el~eky~~-~VPVL~i~~idGe-------~ 116 (176)
.+.+..|..+||+.|......++++.. .-...+.+-.+|++. ++++.++|+. .+|.+++- .+|+ .
T Consensus 19 ~~~lv~f~a~wC~~C~~~~~~~~~~a~----~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~-~~~~~~~~~~~~ 93 (109)
T cd03002 19 YTTLVEFYAPWCGHCKNLKPEYAKAAK----ELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVF-RPPKKASKHAVE 93 (109)
T ss_pred CeEEEEEECCCCHHHHhhChHHHHHHH----HhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEE-eCCCcccccccc
Confidence 347899999999999999999988742 111257788899998 7889999997 69999843 4553 2
Q ss_pred EEeccCCHHHHHHHH
Q 030511 117 VLMACINRFRIEAWL 131 (176)
Q Consensus 117 l~~~~fd~deL~~~L 131 (176)
.+.|..+.++|.+|+
T Consensus 94 ~~~G~~~~~~l~~fi 108 (109)
T cd03002 94 DYNGERSAKAIVDFV 108 (109)
T ss_pred cccCccCHHHHHHHh
Confidence 233667777777765
No 89
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=98.24 E-value=7.9e-07 Score=65.69 Aligned_cols=35 Identities=17% Similarity=0.442 Sum_probs=32.1
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCH
Q 030511 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP 94 (176)
Q Consensus 50 ItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~ 94 (176)
|++|++++|+.|.+++++|++. |++|+++||.+++
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~----------~i~~~~idi~~~~ 35 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEH----------GIEYEFIDYLKEP 35 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHc----------CCCcEEEeeccCC
Confidence 5899999999999999999986 9999999998754
No 90
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=98.23 E-value=1.2e-05 Score=57.63 Aligned_cols=71 Identities=23% Similarity=0.344 Sum_probs=50.2
Q ss_pred CCCCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCC--CHH-HHHhcCC-ccceeEEeccC-CeEEE
Q 030511 44 SSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT--NPE-WEKSYQY-EIPVLARVLSD-GTEVL 118 (176)
Q Consensus 44 ~~~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIde--D~e-l~eky~~-~VPVL~i~~id-Ge~l~ 118 (176)
......++||+.+.|++|..++..|+.. |++|+.++++. .++ +.+.... .||+|. .| |..+.
T Consensus 13 ~~~~~~~~Ly~~~~sp~~~kv~~~L~~~----------gl~~~~~~v~~~~~~~~~~~~np~~~vPvL~---~~~g~~l~ 79 (89)
T cd03055 13 PPVPGIIRLYSMRFCPYAQRARLVLAAK----------NIPHEVININLKDKPDWFLEKNPQGKVPALE---IDEGKVVY 79 (89)
T ss_pred CCCCCcEEEEeCCCCchHHHHHHHHHHc----------CCCCeEEEeCCCCCcHHHHhhCCCCCcCEEE---ECCCCEEE
Confidence 3556679999999999999999999886 88888888873 223 4443333 699998 55 65542
Q ss_pred eccCCHHHHHHHH
Q 030511 119 MACINRFRIEAWL 131 (176)
Q Consensus 119 ~~~fd~deL~~~L 131 (176)
+...|.++|
T Consensus 80 ----eS~aI~~yL 88 (89)
T cd03055 80 ----ESLIICEYL 88 (89)
T ss_pred ----CHHHHHHhh
Confidence 445555544
No 91
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.22 E-value=7e-06 Score=58.02 Aligned_cols=82 Identities=21% Similarity=0.263 Sum_probs=59.1
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCC-CHHHHHhcCC-ccceeEEeccCC-eE--EEecc
Q 030511 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT-NPEWEKSYQY-EIPVLARVLSDG-TE--VLMAC 121 (176)
Q Consensus 47 ~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIde-D~el~eky~~-~VPVL~i~~idG-e~--l~~~~ 121 (176)
.+.+..|+.+||+.|...++.++.+... .....++.+-.+|.+. ++++.++|+. .+|.+++- .+| +. .+-|.
T Consensus 19 ~~~~v~f~a~~C~~C~~~~~~~~~~~~~--~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~~-~~~~~~~~~~~g~ 95 (105)
T cd02998 19 KDVLVEFYAPWCGHCKNLAPEYEKLAAV--FANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKFF-PKGSTEPVKYEGG 95 (105)
T ss_pred CcEEEEEECCCCHHHHhhChHHHHHHHH--hCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEEE-eCCCCCccccCCc
Confidence 3578999999999999999998886420 0112357888899998 8999999997 69999743 344 22 22356
Q ss_pred CCHHHHHHHH
Q 030511 122 INRFRIEAWL 131 (176)
Q Consensus 122 fd~deL~~~L 131 (176)
.+.++|.+++
T Consensus 96 ~~~~~l~~~i 105 (105)
T cd02998 96 RDLEDLVKFV 105 (105)
T ss_pred cCHHHHHhhC
Confidence 7777777653
No 92
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.21 E-value=1.5e-06 Score=67.88 Aligned_cols=84 Identities=13% Similarity=0.150 Sum_probs=56.4
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhc----CCccceeEEeccCCeEEEec
Q 030511 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSY----QYEIPVLARVLSDGTEVLMA 120 (176)
Q Consensus 45 ~~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky----~~~VPVL~i~~idGe~l~~~ 120 (176)
....++.+++.+|||.|...-.+|.++.+ ...++++..+..|+|+++.++| +..||++++...+|++++.+
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae-----~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~w 114 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAE-----ANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELGRW 114 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHH-----H-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEE
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHH-----hCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeEEE
Confidence 35568999999999999999999999853 1237899999999999988887 34799998655678898888
Q ss_pred cCCHHHHHHHHHh
Q 030511 121 CINRFRIEAWLSQ 133 (176)
Q Consensus 121 ~fd~deL~~~L~~ 133 (176)
+..+..+.+++.+
T Consensus 115 gerP~~~~~~~~~ 127 (129)
T PF14595_consen 115 GERPKEVQELVDE 127 (129)
T ss_dssp ESS-HHHH-----
T ss_pred cCCCHHHhhcccc
Confidence 8888888887754
No 93
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.19 E-value=7e-06 Score=58.61 Aligned_cols=82 Identities=15% Similarity=0.241 Sum_probs=62.6
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCC-CCcceEEEEcCCCHHHHHhcCC---ccceeEEeccC--CeE-EE
Q 030511 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSL-HDVDLQVRDITTNPEWEKSYQY---EIPVLARVLSD--GTE-VL 118 (176)
Q Consensus 46 ~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~-~gie~eeIDIdeD~el~eky~~---~VPVL~i~~id--Ge~-l~ 118 (176)
..+.+.+|..+||+.|+..++.+++++. +. ..+.|-.+|+++++++.+.|+. .+|++++. .+ |+. ..
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~-----~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~-~~~~~~k~~~ 85 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAK-----KFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAII-NLSDGKKYLM 85 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHH-----HhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEE-ecccccccCC
Confidence 5677999999999999999999999751 22 2589999999999999999997 59999853 33 432 22
Q ss_pred ecc-CCHHHHHHHHHh
Q 030511 119 MAC-INRFRIEAWLSQ 133 (176)
Q Consensus 119 ~~~-fd~deL~~~L~~ 133 (176)
.++ ++.+.|.+++.+
T Consensus 86 ~~~~~~~~~l~~fi~~ 101 (103)
T cd02982 86 PEEELTAESLEEFVED 101 (103)
T ss_pred CccccCHHHHHHHHHh
Confidence 223 478888888765
No 94
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=98.18 E-value=1.2e-05 Score=54.63 Aligned_cols=65 Identities=15% Similarity=0.277 Sum_probs=48.2
Q ss_pred EEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCH--HHHHhcCC-ccceeEEeccC-CeEEEeccCCHHH
Q 030511 51 VLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP--EWEKSYQY-EIPVLARVLSD-GTEVLMACINRFR 126 (176)
Q Consensus 51 tLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~--el~eky~~-~VPVL~i~~id-Ge~l~~~~fd~de 126 (176)
+||+.++|++|.+++-.|... |++|+.++++.++ ...+..+. .||+|+ .+ |..+ .+...
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~----------gl~~~~~~~~~~~~~~~~~~~~~~~vP~L~---~~~~~~l----~es~a 64 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLK----------NIPVEQIILQNDDEATPIRMIGAKQVPILE---KDDGSFM----AESLD 64 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHc----------CCCeEEEECCCCchHHHHHhcCCCccCEEE---eCCCeEe----ehHHH
Confidence 699999999999999999886 8999999888543 22233333 699998 44 6554 36777
Q ss_pred HHHHHH
Q 030511 127 IEAWLS 132 (176)
Q Consensus 127 L~~~L~ 132 (176)
|.++|.
T Consensus 65 I~~yL~ 70 (71)
T cd03037 65 IVAFID 70 (71)
T ss_pred HHHHHh
Confidence 777765
No 95
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=98.17 E-value=1.7e-05 Score=53.73 Aligned_cols=66 Identities=23% Similarity=0.428 Sum_probs=47.3
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcC--CC----HHHHHhcCC-ccceeEEeccCCeEEEeccC
Q 030511 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--TN----PEWEKSYQY-EIPVLARVLSDGTEVLMACI 122 (176)
Q Consensus 50 ItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDId--eD----~el~eky~~-~VPVL~i~~idGe~l~~~~f 122 (176)
++||+.++|+.|..++..|+.. |++|+.++|+ ++ +++.+.... .||+|. .+|..+ +
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~----------gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~---~~~~~l----~ 63 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKAL----------GLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV---DNGFVL----W 63 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHc----------CCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEE---ECCEEE----E
Confidence 4799999999999999999886 8888888776 22 344443333 699998 567554 3
Q ss_pred CHHHHHHHHH
Q 030511 123 NRFRIEAWLS 132 (176)
Q Consensus 123 d~deL~~~L~ 132 (176)
+...|..+|.
T Consensus 64 es~aI~~yL~ 73 (74)
T cd03045 64 ESHAILIYLV 73 (74)
T ss_pred cHHHHHHHHh
Confidence 5555665553
No 96
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=98.16 E-value=9e-06 Score=60.41 Aligned_cols=64 Identities=13% Similarity=-0.014 Sum_probs=52.1
Q ss_pred chHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHh----cC-----CccceeEEeccCCeEEEeccCCHHHHHHH
Q 030511 60 LCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKS----YQ-----YEIPVLARVLSDGTEVLMACINRFRIEAW 130 (176)
Q Consensus 60 lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~ek----y~-----~~VPVL~i~~idGe~l~~~~fd~deL~~~ 130 (176)
-|..++.+|+.. +++|+++||+.|++.++. -+ ..+|.|| ++|+.++ ++ +++.++
T Consensus 18 ~~~~v~~lL~~k----------~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIF---i~~~~iG--g~--ddl~~l 80 (92)
T cd03030 18 RQQEVLGFLEAK----------KIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIF---NGDEYCG--DY--EAFFEA 80 (92)
T ss_pred HHHHHHHHHHHC----------CCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEE---ECCEEee--CH--HHHHHH
Confidence 588999999886 999999999998865543 23 4689999 8998764 44 999999
Q ss_pred HHhCCchhHH
Q 030511 131 LSQMSLDCVM 140 (176)
Q Consensus 131 L~~~~l~~~~ 140 (176)
-++..|+.++
T Consensus 81 ~e~g~L~~lL 90 (92)
T cd03030 81 KENNTLEEFL 90 (92)
T ss_pred HhCCCHHHHh
Confidence 9999998876
No 97
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=98.16 E-value=2.9e-06 Score=66.13 Aligned_cols=35 Identities=29% Similarity=0.656 Sum_probs=32.7
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCH
Q 030511 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP 94 (176)
Q Consensus 50 ItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~ 94 (176)
|++|+.|+|+.|.+++++|++. |++|+++||.+++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~----------gi~~~~idi~~~~ 36 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH----------DIPFTERNIFSSP 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc----------CCCcEEeeccCCh
Confidence 8999999999999999999886 9999999998775
No 98
>PRK12559 transcriptional regulator Spx; Provisional
Probab=98.13 E-value=1.3e-05 Score=62.70 Aligned_cols=35 Identities=29% Similarity=0.616 Sum_probs=32.7
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCH
Q 030511 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP 94 (176)
Q Consensus 50 ItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~ 94 (176)
|++|+.|+|+.|..++++|++. |++|+++||.+++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~----------gi~~~~~di~~~~ 36 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN----------QIDYTEKNIVSNS 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc----------CCCeEEEEeeCCc
Confidence 8999999999999999999886 9999999998775
No 99
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=98.11 E-value=5e-06 Score=62.60 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=31.8
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCH
Q 030511 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP 94 (176)
Q Consensus 50 ItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~ 94 (176)
|++|+.|+|+.|.+++++|++. |++|+++||.+++
T Consensus 1 i~iy~~~~C~~crka~~~L~~~----------~i~~~~~di~~~p 35 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEAR----------GVAYTFHDYRKDG 35 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHc----------CCCeEEEecccCC
Confidence 5899999999999999999885 9999999997654
No 100
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.10 E-value=2.3e-05 Score=67.80 Aligned_cols=82 Identities=11% Similarity=0.160 Sum_probs=62.9
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCC-----------CHHHHHhcCC-ccceeEEecc
Q 030511 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT-----------NPEWEKSYQY-EIPVLARVLS 112 (176)
Q Consensus 45 ~~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIde-----------D~el~eky~~-~VPVL~i~~i 112 (176)
.....+..|.++||++|......|+++. +.+++.+..|++|. |....++||. .+|.+++...
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la------~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~ 238 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFE------DRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADP 238 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHH------HHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEEC
Confidence 3456799999999999999999999883 44578888899986 3467889997 6999986544
Q ss_pred CCe---EEEeccCCHHHHHHHHH
Q 030511 113 DGT---EVLMACINRFRIEAWLS 132 (176)
Q Consensus 113 dGe---~l~~~~fd~deL~~~L~ 132 (176)
+|+ .+..|..+.++|.+.+.
T Consensus 239 ~~~~v~~v~~G~~s~~eL~~~i~ 261 (271)
T TIGR02740 239 DPNQFTPIGFGVMSADELVDRIL 261 (271)
T ss_pred CCCEEEEEEeCCCCHHHHHHHHH
Confidence 343 24557789998877664
No 101
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=98.09 E-value=1.9e-05 Score=60.44 Aligned_cols=35 Identities=37% Similarity=0.683 Sum_probs=31.6
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCC
Q 030511 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN 93 (176)
Q Consensus 49 kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD 93 (176)
.|++|+.|.|.-|.+|+++|++. |++|+++|+.++
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~----------gi~~~~~d~~~~ 35 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAA----------GHEVEVRDLLTE 35 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHc----------CCCcEEeehhcC
Confidence 37999999999999999999885 999999999654
No 102
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=98.07 E-value=4.9e-06 Score=63.00 Aligned_cols=36 Identities=25% Similarity=0.555 Sum_probs=32.8
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHH
Q 030511 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPE 95 (176)
Q Consensus 50 ItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~e 95 (176)
|++|+.++|+.|..++++|++. |++|+++||.+++.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~----------~i~~~~idi~~~~~ 36 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEAN----------GIEYQFIDIGEDGP 36 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHc----------CCceEEEecCCChh
Confidence 5899999999999999999885 99999999998763
No 103
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.05 E-value=2.1e-05 Score=60.88 Aligned_cols=80 Identities=15% Similarity=0.239 Sum_probs=57.5
Q ss_pred CCceEEEEeC-------CCCCchHHHHHHHHHHhccCCCCCCC-CcceEEEEcCCC-------HHHHHhcCC--ccceeE
Q 030511 46 STRKLVLYSK-------PGCCLCDGLKEKLQAAFLLSGPDSLH-DVDLQVRDITTN-------PEWEKSYQY--EIPVLA 108 (176)
Q Consensus 46 ~~~kItLYTk-------pgC~lCe~aKe~Le~l~~~~~~~~~~-gie~eeIDIdeD-------~el~eky~~--~VPVL~ 108 (176)
..+-+..|+. +||+.|..++..|+++.. +.. ++.+..||++++ .+++.+|+. .+|+++
T Consensus 21 ~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~-----~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~ 95 (119)
T cd02952 21 GKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALK-----AAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLL 95 (119)
T ss_pred CCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHH-----HCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEE
Confidence 3466888888 999999999999999752 222 588999999864 578888886 599998
Q ss_pred EeccCCeE-EEeccCCHHHHHHHH
Q 030511 109 RVLSDGTE-VLMACINRFRIEAWL 131 (176)
Q Consensus 109 i~~idGe~-l~~~~fd~deL~~~L 131 (176)
.- .+|+. +.-.-++.+.+..+|
T Consensus 96 ~~-~~~~~l~~~~c~~~~~~~~~~ 118 (119)
T cd02952 96 RW-KTPQRLVEDECLQADLVEMFF 118 (119)
T ss_pred EE-cCCceecchhhcCHHHHHHhh
Confidence 53 44433 322336677766665
No 104
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=98.04 E-value=2.3e-05 Score=53.42 Aligned_cols=55 Identities=24% Similarity=0.375 Sum_probs=40.9
Q ss_pred EEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCC---CHHHHHhcCC-ccceeEEeccCCeEE
Q 030511 51 VLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT---NPEWEKSYQY-EIPVLARVLSDGTEV 117 (176)
Q Consensus 51 tLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIde---D~el~eky~~-~VPVL~i~~idGe~l 117 (176)
++|+.++|++|.+++-.|+.+ |++|+.++++. .+++.+.... .||+|.. .||..+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~----------gl~~e~~~v~~~~~~~~~~~~np~~~vP~L~~--~~g~~l 60 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLA----------GITVELREVELKNKPAEMLAASPKGTVPVLVL--GNGTVI 60 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHc----------CCCcEEEEeCCCCCCHHHHHHCCCCCCCEEEE--CCCcEE
Confidence 799999999999999999886 77888777762 2344444444 6999982 247654
No 105
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.02 E-value=1.4e-05 Score=62.02 Aligned_cols=68 Identities=13% Similarity=0.302 Sum_probs=55.1
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCC-cceEEEEcCCCHHHHHhcCCc-cceeEEeccCCeEEE
Q 030511 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHD-VDLQVRDITTNPEWEKSYQYE-IPVLARVLSDGTEVL 118 (176)
Q Consensus 45 ~~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~g-ie~eeIDIdeD~el~eky~~~-VPVL~i~~idGe~l~ 118 (176)
....-|.-|+++||+.|...-+.|++++ .+..+ +.+-.||+|+.+++.++|+.. +|+.+ -+.+|+.+.
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela-----~~~~~~~~f~kVDVDev~dva~~y~I~amPtfv-ffkngkh~~ 82 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTS-----HDLSKMASIYLVDVDKVPVYTQYFDISYIPSTI-FFFNGQHMK 82 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHH-----HHccCceEEEEEeccccHHHHHhcCceeCcEEE-EEECCcEEE
Confidence 3455688899999999999999999985 22335 789999999999999999986 89887 347777543
No 106
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=98.00 E-value=4.6e-05 Score=50.93 Aligned_cols=66 Identities=23% Similarity=0.370 Sum_probs=43.8
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcC--C----CHHHHHhcCC-ccceeEEeccCCeEEEeccC
Q 030511 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--T----NPEWEKSYQY-EIPVLARVLSDGTEVLMACI 122 (176)
Q Consensus 50 ItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDId--e----D~el~eky~~-~VPVL~i~~idGe~l~~~~f 122 (176)
++||+.++|++|.+++..|+.. +++|+.++|+ . .+++.+.... .||++.. .||..+ .
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~----------~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~~l----~ 64 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEK----------GIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL--DDGTVI----T 64 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHc----------CCCceEEEeecccCccCCHHHHhhCCCCCCCEEEe--CCCCEE----e
Confidence 4799999999999999999886 7777766665 2 1233433333 6999972 255443 2
Q ss_pred CHHHHHHHH
Q 030511 123 NRFRIEAWL 131 (176)
Q Consensus 123 d~deL~~~L 131 (176)
+...|..+|
T Consensus 65 es~aI~~yL 73 (74)
T cd03051 65 ESVAICRYL 73 (74)
T ss_pred cHHHHHHHh
Confidence 444554444
No 107
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.00 E-value=5.9e-05 Score=50.57 Aligned_cols=65 Identities=23% Similarity=0.318 Sum_probs=45.3
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCC--C----HHHHHhcC-CccceeEEeccCCeEEEeccC
Q 030511 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT--N----PEWEKSYQ-YEIPVLARVLSDGTEVLMACI 122 (176)
Q Consensus 50 ItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIde--D----~el~eky~-~~VPVL~i~~idGe~l~~~~f 122 (176)
++||+.++|+.|..++-.|+.. |++|+.++|+. + +++.+... -.+|++. .+|..+.
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~----------~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~---~~~~~i~---- 63 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALL----------GIPYEWVEVDILKGETRTPEFLALNPNGEVPVLE---LDGRVLA---- 63 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHc----------CCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEE---ECCEEEE----
Confidence 4799999999999999999886 88888888862 1 22333322 3699998 5676543
Q ss_pred CHHHHHHHH
Q 030511 123 NRFRIEAWL 131 (176)
Q Consensus 123 d~deL~~~L 131 (176)
+...|.++|
T Consensus 64 es~aI~~yl 72 (73)
T cd03056 64 ESNAILVYL 72 (73)
T ss_pred cHHHHHHHh
Confidence 444454443
No 108
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=97.99 E-value=9.2e-06 Score=63.61 Aligned_cols=35 Identities=20% Similarity=0.508 Sum_probs=32.3
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCH
Q 030511 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP 94 (176)
Q Consensus 50 ItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~ 94 (176)
|++|+.|+|+.|..|+++|++. |++|+++|+.+++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~----------~i~~~~~d~~~~~ 36 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH----------QLSYKEQNLGKEP 36 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc----------CCCeEEEECCCCC
Confidence 8999999999999999999885 9999999998663
No 109
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=97.98 E-value=5.4e-05 Score=52.33 Aligned_cols=66 Identities=23% Similarity=0.414 Sum_probs=52.5
Q ss_pred EEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCC---HHHHHhcCC-ccceeEEeccCCeEEEeccCCHHHH
Q 030511 52 LYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN---PEWEKSYQY-EIPVLARVLSDGTEVLMACINRFRI 127 (176)
Q Consensus 52 LYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD---~el~eky~~-~VPVL~i~~idGe~l~~~~fd~deL 127 (176)
||+.++|++|.+++-.|+.. |++|+.++++.. +++.+.... .||||. .||..++ +...|
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~----------~i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~---~~g~~l~----dS~~I 63 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEK----------GIPYELVPVDPEEKRPEFLKLNPKGKVPVLV---DDGEVLT----DSAAI 63 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHH----------TEEEEEEEEBTTSTSHHHHHHSTTSBSSEEE---ETTEEEE----SHHHH
T ss_pred CCCcCCChHHHHHHHHHHHc----------CCeEEEeccCcccchhHHHhhcccccceEEE---ECCEEEe----CHHHH
Confidence 79999999999999999987 888988888732 345555544 699998 7888654 88888
Q ss_pred HHHHHhC
Q 030511 128 EAWLSQM 134 (176)
Q Consensus 128 ~~~L~~~ 134 (176)
.++|.+.
T Consensus 64 ~~yL~~~ 70 (75)
T PF13417_consen 64 IEYLEER 70 (75)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888764
No 110
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=97.96 E-value=1.2e-05 Score=60.73 Aligned_cols=35 Identities=26% Similarity=0.650 Sum_probs=32.5
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCH
Q 030511 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP 94 (176)
Q Consensus 50 ItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~ 94 (176)
|++|+.++|+.|..++++|++. |++|+.+||.+++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~----------gi~~~~idi~~~~ 36 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH----------QIPFEERNLFKQP 36 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC----------CCceEEEecCCCc
Confidence 8999999999999999999886 9999999998764
No 111
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.94 E-value=5.1e-05 Score=53.65 Aligned_cols=80 Identities=15% Similarity=0.144 Sum_probs=54.9
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcC-CccceeEEeccCCe---E-EEecc
Q 030511 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQ-YEIPVLARVLSDGT---E-VLMAC 121 (176)
Q Consensus 47 ~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~-~~VPVL~i~~idGe---~-l~~~~ 121 (176)
..-+.+|..+||+.|......++++.. .-.....+.+-.+|.+.+ +....++ ..+|.++.- .+|+ . .+.|.
T Consensus 19 ~~~~v~f~~~~C~~C~~~~~~~~~~~~--~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~-~~~~~~~~~~~~g~ 94 (104)
T cd02995 19 KDVLVEFYAPWCGHCKALAPIYEELAE--KLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFF-PAGDKSNPIKYEGD 94 (104)
T ss_pred CcEEEEEECCCCHHHHHHhhHHHHHHH--HhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEE-cCCCcCCceEccCC
Confidence 456888999999999999999988742 101113578888999887 4566677 579998743 5554 2 23355
Q ss_pred CCHHHHHHH
Q 030511 122 INRFRIEAW 130 (176)
Q Consensus 122 fd~deL~~~ 130 (176)
.+.++|.+|
T Consensus 95 ~~~~~l~~f 103 (104)
T cd02995 95 RTLEDLIKF 103 (104)
T ss_pred cCHHHHHhh
Confidence 666666554
No 112
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.94 E-value=5.5e-05 Score=62.55 Aligned_cols=80 Identities=23% Similarity=0.201 Sum_probs=60.0
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCeEEEe------
Q 030511 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVLM------ 119 (176)
Q Consensus 47 ~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe~l~~------ 119 (176)
..-|+.|+.+||+.|..+...|+.++ ..+..+.|..||++.. ..+|+. .+|+++ .+.||+.+..
T Consensus 103 ~~VVV~Fya~wc~~C~~m~~~l~~LA-----~k~~~vkFvkI~ad~~---~~~~~i~~lPTll-iyk~G~~v~~ivG~~~ 173 (192)
T cd02988 103 TWVVVHLYKDGIPLCRLLNQHLSELA-----RKFPDTKFVKIISTQC---IPNYPDKNLPTIL-VYRNGDIVKQFIGLLE 173 (192)
T ss_pred CEEEEEEECCCCchHHHHHHHHHHHH-----HHCCCCEEEEEEhHHh---HhhCCCCCCCEEE-EEECCEEEEEEeCchh
Confidence 34577899999999999999999985 2334678888888643 578887 599998 4689886533
Q ss_pred ---ccCCHHHHHHHHHhCC
Q 030511 120 ---ACINRFRIEAWLSQMS 135 (176)
Q Consensus 120 ---~~fd~deL~~~L~~~~ 135 (176)
..|+.++|..+|.+.|
T Consensus 174 ~gg~~~~~~~lE~~L~~~g 192 (192)
T cd02988 174 FGGMNTTMEDLEWLLVQVG 192 (192)
T ss_pred hCCCCCCHHHHHHHHHhcC
Confidence 1577788888777654
No 113
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=97.89 E-value=9.9e-05 Score=59.10 Aligned_cols=82 Identities=13% Similarity=0.232 Sum_probs=58.9
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCC------------HHHHH-hc---CC-ccceeE
Q 030511 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN------------PEWEK-SY---QY-EIPVLA 108 (176)
Q Consensus 46 ~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD------------~el~e-ky---~~-~VPVL~ 108 (176)
...++..|+.+||+.|......|+++. +..++.+..|++|++ .+... .| +. .+|+.+
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~------~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~ 123 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFS------QQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATF 123 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHH------HHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEE
Confidence 344699999999999999999999873 334778888888753 33333 34 43 589999
Q ss_pred EeccCCeE---EEeccCCHHHHHHHHHh
Q 030511 109 RVLSDGTE---VLMACINRFRIEAWLSQ 133 (176)
Q Consensus 109 i~~idGe~---l~~~~fd~deL~~~L~~ 133 (176)
+...+|.. ...|..+.+++.+.+..
T Consensus 124 LID~~G~~i~~~~~G~~s~~~l~~~I~~ 151 (153)
T TIGR02738 124 LVNVNTRKAYPVLQGAVDEAELANRMDE 151 (153)
T ss_pred EEeCCCCEEEEEeecccCHHHHHHHHHH
Confidence 65556654 34578888888887654
No 114
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.88 E-value=0.00012 Score=60.72 Aligned_cols=77 Identities=13% Similarity=0.165 Sum_probs=60.3
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCC-------------HHHHHhcC---CccceeEEeccC
Q 030511 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN-------------PEWEKSYQ---YEIPVLARVLSD 113 (176)
Q Consensus 50 ItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD-------------~el~eky~---~~VPVL~i~~id 113 (176)
+.+|+.+||++|......|.++. +..++++.-|++|++ ....+.|+ ..+|..++...+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~------~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~ 146 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLA------QQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVN 146 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHH------HHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCC
Confidence 88999999999999999999873 334788888888743 12556788 379999987788
Q ss_pred CeE---EEeccCCHHHHHHHHH
Q 030511 114 GTE---VLMACINRFRIEAWLS 132 (176)
Q Consensus 114 Ge~---l~~~~fd~deL~~~L~ 132 (176)
|+. +..|..+.++|.+.+.
T Consensus 147 G~i~~~~~~G~~~~~~L~~~I~ 168 (181)
T PRK13728 147 TLEALPLLQGATDAAGFMARMD 168 (181)
T ss_pred CcEEEEEEECCCCHHHHHHHHH
Confidence 875 4678899998877654
No 115
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=97.86 E-value=7.4e-05 Score=55.02 Aligned_cols=81 Identities=12% Similarity=0.194 Sum_probs=54.8
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCC-CHHHHH-hcCC-ccceeEEeccCCe--EEEe-
Q 030511 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT-NPEWEK-SYQY-EIPVLARVLSDGT--EVLM- 119 (176)
Q Consensus 46 ~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIde-D~el~e-ky~~-~VPVL~i~~idGe--~l~~- 119 (176)
..+.++.|..+||+.|..++..++++.. .....++.+-.+|++. +..+.. .|+. .+|+++.- .+|. ...+
T Consensus 21 ~k~vlv~f~a~wC~~C~~~~~~~~~la~---~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~f-~~~~~~~~~y~ 96 (109)
T cd02993 21 NQSTLVVLYAPWCPFCQAMEASYEELAE---KLAGSNVKVAKFNADGEQREFAKEELQLKSFPTILFF-PKNSRQPIKYP 96 (109)
T ss_pred CCCEEEEEECCCCHHHHHHhHHHHHHHH---HhccCCeEEEEEECCccchhhHHhhcCCCcCCEEEEE-cCCCCCceecc
Confidence 3567999999999999999999988641 1222368888999997 456655 4886 79998742 4442 2333
Q ss_pred cc-CCHHHHHHH
Q 030511 120 AC-INRFRIEAW 130 (176)
Q Consensus 120 ~~-fd~deL~~~ 130 (176)
|. -+.+.|.+|
T Consensus 97 g~~~~~~~l~~f 108 (109)
T cd02993 97 SEQRDVDSLLMF 108 (109)
T ss_pred CCCCCHHHHHhh
Confidence 22 456666554
No 116
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.78 E-value=0.00013 Score=61.30 Aligned_cols=79 Identities=15% Similarity=0.159 Sum_probs=64.5
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCC-----------CHHHHHhcCC-ccceeEEeccC
Q 030511 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT-----------NPEWEKSYQY-EIPVLARVLSD 113 (176)
Q Consensus 46 ~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIde-----------D~el~eky~~-~VPVL~i~~id 113 (176)
..-.+.+|.+++|++|+....+|..+. ..+|+++..|++|. |.+..++++. .+|.++.+..+
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~------~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~ 193 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFA------DKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPN 193 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHH------HHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECC
Confidence 455799999999999999999999983 45699999999983 5788899997 58999976555
Q ss_pred C-e--EEEeccCCHHHHHHH
Q 030511 114 G-T--EVLMACINRFRIEAW 130 (176)
Q Consensus 114 G-e--~l~~~~fd~deL~~~ 130 (176)
+ + .+..|..+.++|.+-
T Consensus 194 ~~~~~pv~~G~~s~~~L~~r 213 (215)
T PF13728_consen 194 TKKWYPVSQGFMSLDELEDR 213 (215)
T ss_pred CCeEEEEeeecCCHHHHHHh
Confidence 5 3 466788888888764
No 117
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.78 E-value=8.2e-05 Score=45.06 Aligned_cols=55 Identities=29% Similarity=0.512 Sum_probs=43.3
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHH---hcCC-ccceeEE
Q 030511 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEK---SYQY-EIPVLAR 109 (176)
Q Consensus 50 ItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~e---ky~~-~VPVL~i 109 (176)
+++|...+|+.|...+..+++.. ....++.+..+|++++.+..+ .++. .+|++++
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~ 59 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELA-----LLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVV 59 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHH-----hhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEE
Confidence 47899999999999999999751 223489999999998876554 5554 6999984
No 118
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=97.76 E-value=0.00011 Score=55.75 Aligned_cols=35 Identities=20% Similarity=0.434 Sum_probs=31.6
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCH
Q 030511 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP 94 (176)
Q Consensus 50 ItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~ 94 (176)
|++|+.|+|.-|.+++.+|++. +++|+++||.+++
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~----------~i~~~~~di~~~p 35 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDK----------GIEPEVVKYLKNP 35 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHC----------CCCeEEEeccCCC
Confidence 5899999999999999999885 9999999998653
No 119
>PTZ00102 disulphide isomerase; Provisional
Probab=97.75 E-value=0.00017 Score=64.54 Aligned_cols=90 Identities=18% Similarity=0.268 Sum_probs=67.3
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCeEEEe-ccCC
Q 030511 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVLM-ACIN 123 (176)
Q Consensus 46 ~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe~l~~-~~fd 123 (176)
....++.|+.+||+.|..+...++++... ......++.+-.+|.+++.++.++|+. .+|.+.+ +.+|+.+.+ |..+
T Consensus 49 ~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~-~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~~-~~~g~~~~y~g~~~ 126 (477)
T PTZ00102 49 NEIVLVKFYAPWCGHCKRLAPEYKKAAKM-LKEKKSEIVLASVDATEEMELAQEFGVRGYPTIKF-FNKGNPVNYSGGRT 126 (477)
T ss_pred CCcEEEEEECCCCHHHHHhhHHHHHHHHH-HHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEEE-EECCceEEecCCCC
Confidence 34679999999999999999887765310 001123588999999999999999997 6999874 356654433 7789
Q ss_pred HHHHHHHHHhCCch
Q 030511 124 RFRIEAWLSQMSLD 137 (176)
Q Consensus 124 ~deL~~~L~~~~l~ 137 (176)
.+.|.+++.+.--+
T Consensus 127 ~~~l~~~l~~~~~~ 140 (477)
T PTZ00102 127 ADGIVSWIKKLTGP 140 (477)
T ss_pred HHHHHHHHHHhhCC
Confidence 99999999876433
No 120
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=97.74 E-value=0.00013 Score=69.16 Aligned_cols=83 Identities=19% Similarity=0.276 Sum_probs=60.3
Q ss_pred CceEEEEeCCCCCchHHHHHHH---HHHhccCCCCCCCCcceEEEEcCCC----HHHHHhcCC-ccceeEEeccCCeEE-
Q 030511 47 TRKLVLYSKPGCCLCDGLKEKL---QAAFLLSGPDSLHDVDLQVRDITTN----PEWEKSYQY-EIPVLARVLSDGTEV- 117 (176)
Q Consensus 47 ~~kItLYTkpgC~lCe~aKe~L---e~l~~~~~~~~~~gie~eeIDIdeD----~el~eky~~-~VPVL~i~~idGe~l- 117 (176)
.+-+..|+.+||+.|+..++.. ++.. ....++.+..+|++++ .++.++|+. .+|+++.-..||+++
T Consensus 475 K~VlVdF~A~WC~~Ck~~e~~~~~~~~v~-----~~l~~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~~G~~i~ 549 (571)
T PRK00293 475 KPVMLDLYADWCVACKEFEKYTFSDPQVQ-----QALADTVLLQADVTANNAEDVALLKHYNVLGLPTILFFDAQGQEIP 549 (571)
T ss_pred CcEEEEEECCcCHhHHHHHHHhcCCHHHH-----HHhcCCEEEEEECCCCChhhHHHHHHcCCCCCCEEEEECCCCCCcc
Confidence 4567889999999999987753 2221 1123678888999864 468889996 699998543478763
Q ss_pred -E--eccCCHHHHHHHHHhC
Q 030511 118 -L--MACINRFRIEAWLSQM 134 (176)
Q Consensus 118 -~--~~~fd~deL~~~L~~~ 134 (176)
. .|..+++++.++|++.
T Consensus 550 ~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 550 DARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred cccccCCCCHHHHHHHHHHh
Confidence 2 2668999999998864
No 121
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=97.74 E-value=6.9e-05 Score=56.87 Aligned_cols=67 Identities=16% Similarity=0.236 Sum_probs=47.8
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCH-HHHHhcCCc---cceeEEeccCCeEE
Q 030511 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP-EWEKSYQYE---IPVLARVLSDGTEV 117 (176)
Q Consensus 47 ~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~-el~eky~~~---VPVL~i~~idGe~l 117 (176)
.+-+..|+.+||+.|+..+..+.+... .......|..+|++.++ ...++|+.. +|+++....+|+.+
T Consensus 20 kpVlV~F~a~WC~~C~~~~~~~~~~~~----~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~ 90 (117)
T cd02959 20 KPLMLLIHKTWCGACKALKPKFAESKE----ISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVH 90 (117)
T ss_pred CcEEEEEeCCcCHHHHHHHHHHhhhHH----HHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCc
Confidence 456888999999999999999877421 11124568889999775 344677653 99998644577764
No 122
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.70 E-value=0.00016 Score=63.68 Aligned_cols=87 Identities=18% Similarity=0.209 Sum_probs=65.5
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCeE---EEeccC
Q 030511 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTE---VLMACI 122 (176)
Q Consensus 47 ~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe~---l~~~~f 122 (176)
...+..|+.+||+.|..+...++++...- .....++.+-.+|.++++++.++|+. .+|+++. +.+|+. ...|..
T Consensus 19 ~~~~v~f~a~wC~~c~~~~~~~~~~a~~~-~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~-~~~g~~~~~~~~g~~ 96 (462)
T TIGR01130 19 EFVLVEFYAPWCGHCKSLAPEYEKAADEL-KKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKI-FRNGEDSVSDYNGPR 96 (462)
T ss_pred CCEEEEEECCCCHHHHhhhHHHHHHHHHH-hhcCCceEEEEEECCCcHHHHHhCCCccccEEEE-EeCCccceeEecCCC
Confidence 35689999999999999998887653100 01112488999999999999999997 5999874 366664 344778
Q ss_pred CHHHHHHHHHhCC
Q 030511 123 NRFRIEAWLSQMS 135 (176)
Q Consensus 123 d~deL~~~L~~~~ 135 (176)
+.+.|.+++.+.-
T Consensus 97 ~~~~l~~~i~~~~ 109 (462)
T TIGR01130 97 DADGIVKYMKKQS 109 (462)
T ss_pred CHHHHHHHHHHhc
Confidence 9999999997764
No 123
>PTZ00102 disulphide isomerase; Provisional
Probab=97.67 E-value=0.00022 Score=63.88 Aligned_cols=88 Identities=11% Similarity=0.098 Sum_probs=65.7
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCeE---EEecc
Q 030511 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTE---VLMAC 121 (176)
Q Consensus 46 ~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe~---l~~~~ 121 (176)
....+..|+.+||+.|...+..++++... ......+.+-.+|.++|+...++|+. .+|.++.- .+|+. .+.|.
T Consensus 375 ~k~vlv~f~a~wC~~C~~~~p~~~~~a~~--~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~-~~~~~~~~~~~G~ 451 (477)
T PTZ00102 375 DKDVLLEIYAPWCGHCKNLEPVYNELGEK--YKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFV-KAGERTPIPYEGE 451 (477)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHH--hccCCcEEEEEEECCCCccchhcCCCcccCeEEEE-ECCCcceeEecCc
Confidence 34568889999999999999999886421 01112477888999999888888887 69999743 44432 23477
Q ss_pred CCHHHHHHHHHhCCc
Q 030511 122 INRFRIEAWLSQMSL 136 (176)
Q Consensus 122 fd~deL~~~L~~~~l 136 (176)
.+.++|.++|.++.-
T Consensus 452 ~~~~~l~~~i~~~~~ 466 (477)
T PTZ00102 452 RTVEGFKEFVNKHAT 466 (477)
T ss_pred CCHHHHHHHHHHcCC
Confidence 999999999988764
No 124
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=97.65 E-value=0.00021 Score=55.80 Aligned_cols=35 Identities=34% Similarity=0.658 Sum_probs=32.1
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCC
Q 030511 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN 93 (176)
Q Consensus 49 kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD 93 (176)
.+++|+-|+|.-|.+++++|++. |++|+++|+-++
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~----------gi~~~~~d~~~~ 36 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKAS----------GHDVEVQDILKE 36 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHC----------CCCcEEEeccCC
Confidence 58999999999999999999885 999999999765
No 125
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=97.58 E-value=0.00053 Score=46.81 Aligned_cols=67 Identities=15% Similarity=0.152 Sum_probs=48.5
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCC--C-HHHHHhcC--CccceeEEeccCCeEEEeccCCH
Q 030511 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT--N-PEWEKSYQ--YEIPVLARVLSDGTEVLMACINR 124 (176)
Q Consensus 50 ItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIde--D-~el~eky~--~~VPVL~i~~idGe~l~~~~fd~ 124 (176)
++||+.+.|+.|.+++-.|+.. |++|+.++++. . +++.+..- -.||+|. .+|..+ .+.
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~----------gl~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~---~~~~~l----~eS 63 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALK----------GVPYEYVEEDLGNKSELLLASNPVHKKIPVLL---HNGKPI----CES 63 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHc----------CCCCEEEEeCcccCCHHHHHhCCCCCCCCEEE---ECCEEe----ehH
Confidence 4799999999999999999886 78888877763 2 33333332 3699998 566554 467
Q ss_pred HHHHHHHHh
Q 030511 125 FRIEAWLSQ 133 (176)
Q Consensus 125 deL~~~L~~ 133 (176)
..|.++|++
T Consensus 64 ~aI~~yL~~ 72 (74)
T cd03058 64 LIIVEYIDE 72 (74)
T ss_pred HHHHHHHHh
Confidence 777777765
No 126
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=97.55 E-value=0.001 Score=45.22 Aligned_cols=67 Identities=16% Similarity=0.243 Sum_probs=48.3
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCC-----HHHHHhc-CC-ccceeEEeccCCeEEEeccC
Q 030511 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN-----PEWEKSY-QY-EIPVLARVLSDGTEVLMACI 122 (176)
Q Consensus 50 ItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD-----~el~eky-~~-~VPVL~i~~idGe~l~~~~f 122 (176)
++||+.+.|++|..++-.|+.. |++|+.++|+.. ++.+.+. .. .+|++. .+|..+ +
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~----------~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~---~~g~~l----~ 64 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEK----------GVDYELVPVDLTKGEHKSPEHLARNPFGQIPALE---DGDLKL----F 64 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHc----------CCCcEEEEeCccccccCCHHHHhhCCCCCCCEEE---ECCEEE----E
Confidence 7899999999999999999886 788887777632 2333333 33 599998 567554 3
Q ss_pred CHHHHHHHHHh
Q 030511 123 NRFRIEAWLSQ 133 (176)
Q Consensus 123 d~deL~~~L~~ 133 (176)
+...|.++|.+
T Consensus 65 es~aI~~yL~~ 75 (76)
T cd03053 65 ESRAITRYLAE 75 (76)
T ss_pred cHHHHHHHHhh
Confidence 66777777654
No 127
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=97.54 E-value=0.00056 Score=53.08 Aligned_cols=68 Identities=12% Similarity=0.103 Sum_probs=46.6
Q ss_pred ceEEEEeCCCCCchHHHHH-HHHH--HhccCCCCCCCCcceEEEEcCCCHHHHHhc--------CC-ccceeEEeccCCe
Q 030511 48 RKLVLYSKPGCCLCDGLKE-KLQA--AFLLSGPDSLHDVDLQVRDITTNPEWEKSY--------QY-EIPVLARVLSDGT 115 (176)
Q Consensus 48 ~kItLYTkpgC~lCe~aKe-~Le~--l~~~~~~~~~~gie~eeIDIdeD~el~eky--------~~-~VPVL~i~~idGe 115 (176)
+-+..|+.+||+.|+.++. .+.. +.. .-..++.+..+|+++++++.++| +. ..|.+++...+|+
T Consensus 17 pVll~f~a~WC~~Ck~me~~~f~~~~V~~----~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~ 92 (124)
T cd02955 17 PIFLSIGYSTCHWCHVMEHESFEDEEVAA----ILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLK 92 (124)
T ss_pred eEEEEEccCCCHhHHHHHHHccCCHHHHH----HHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCC
Confidence 4466789999999999975 2222 100 00236888899999888765543 43 6999987778898
Q ss_pred EEEe
Q 030511 116 EVLM 119 (176)
Q Consensus 116 ~l~~ 119 (176)
.+.-
T Consensus 93 ~~~~ 96 (124)
T cd02955 93 PFFG 96 (124)
T ss_pred EEee
Confidence 7754
No 128
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=97.54 E-value=0.00056 Score=53.02 Aligned_cols=87 Identities=11% Similarity=0.202 Sum_probs=59.4
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCC----------------------HHHHHhcCC
Q 030511 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN----------------------PEWEKSYQY 102 (176)
Q Consensus 45 ~~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD----------------------~el~eky~~ 102 (176)
.....+..|+.+||+.|......|.++.. .....++.+-.++.+.+ .++.++|+.
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~---~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 136 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYP---KYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGV 136 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHH---HhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCC
Confidence 34557888889999999998888877631 01223567777776643 345566775
Q ss_pred -ccceeEEeccCCeEEE--eccCCHHHHHHHHHhC
Q 030511 103 -EIPVLARVLSDGTEVL--MACINRFRIEAWLSQM 134 (176)
Q Consensus 103 -~VPVL~i~~idGe~l~--~~~fd~deL~~~L~~~ 134 (176)
.+|.+++...+|+.+. .|..+.+++.++|++.
T Consensus 137 ~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 137 GPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred CCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 4797775556787653 3678889999988764
No 129
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=97.52 E-value=0.00048 Score=51.20 Aligned_cols=77 Identities=12% Similarity=-0.007 Sum_probs=49.5
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEE-----------------------cCCCHHHHHhcC
Q 030511 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRD-----------------------ITTNPEWEKSYQ 101 (176)
Q Consensus 45 ~~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeID-----------------------IdeD~el~eky~ 101 (176)
...+.+..|..+||+.|......|+++.. ..++.+..|+ +|.+.++...|+
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~------~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 97 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALAR------QGRVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLG 97 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHH------hcCcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcC
Confidence 34567888999999999999999988742 2234444444 344445556677
Q ss_pred C-ccceeEEeccCCeEEEe--ccCCHHHH
Q 030511 102 Y-EIPVLARVLSDGTEVLM--ACINRFRI 127 (176)
Q Consensus 102 ~-~VPVL~i~~idGe~l~~--~~fd~deL 127 (176)
. .+|..++...+|+.+.. |..+++.|
T Consensus 98 v~~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 98 VYGVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CCCCCeEEEECCCceEEEEEeccCChHhc
Confidence 5 68955544467876543 55665543
No 130
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00027 Score=52.11 Aligned_cols=56 Identities=34% Similarity=0.427 Sum_probs=44.6
Q ss_pred EEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHH-------------H---HHhcCC-ccceeEEeccC
Q 030511 51 VLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPE-------------W---EKSYQY-EIPVLARVLSD 113 (176)
Q Consensus 51 tLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~e-------------l---~eky~~-~VPVL~i~~id 113 (176)
++|+...||.|..++++|+++ ++.|+.|||++... . .+..|+ .||-|.. .|
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl----------~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~--~d 72 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERL----------NVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT--DD 72 (85)
T ss_pred eeeccccCcchHHHHHHHHHc----------CCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe--CC
Confidence 899999999999999999998 89999999996532 1 112354 7999984 67
Q ss_pred CeEEE
Q 030511 114 GTEVL 118 (176)
Q Consensus 114 Ge~l~ 118 (176)
|+.+.
T Consensus 73 ~~vVl 77 (85)
T COG4545 73 GKVVL 77 (85)
T ss_pred CcEEE
Confidence 87764
No 131
>PRK10853 putative reductase; Provisional
Probab=97.51 E-value=0.00021 Score=55.00 Aligned_cols=35 Identities=20% Similarity=0.361 Sum_probs=32.0
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCH
Q 030511 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP 94 (176)
Q Consensus 50 ItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~ 94 (176)
|++|+.|+|.-|.+|+.+|++. +++|+.+|+.+++
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~----------~i~~~~~d~~k~p 36 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ----------GIDYRFHDYRVDG 36 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc----------CCCcEEeehccCC
Confidence 8999999999999999999875 9999999997654
No 132
>PTZ00062 glutaredoxin; Provisional
Probab=97.51 E-value=0.00073 Score=56.81 Aligned_cols=75 Identities=8% Similarity=0.077 Sum_probs=57.7
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCeEEEe-ccCCH
Q 030511 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVLM-ACINR 124 (176)
Q Consensus 47 ~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe~l~~-~~fd~ 124 (176)
...|..|+.+||+.|....++|+.+. .++..+.|-.||.+ |+. .||..+. +.||+.+.. -+-++
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~-----~~~~~~~F~~V~~d--------~~V~~vPtfv~-~~~g~~i~r~~G~~~ 83 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALV-----EDFPSLEFYVVNLA--------DANNEYGVFEF-YQNSQLINSLEGCNT 83 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHH-----HHCCCcEEEEEccc--------cCcccceEEEE-EECCEEEeeeeCCCH
Confidence 55788888999999999999999985 23346777777765 886 5997763 489987655 56789
Q ss_pred HHHHHHHHhCC
Q 030511 125 FRIEAWLSQMS 135 (176)
Q Consensus 125 deL~~~L~~~~ 135 (176)
.+|...+....
T Consensus 84 ~~~~~~~~~~~ 94 (204)
T PTZ00062 84 STLVSFIRGWA 94 (204)
T ss_pred HHHHHHHHHHc
Confidence 99998886643
No 133
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.49 E-value=0.00047 Score=64.39 Aligned_cols=84 Identities=11% Similarity=0.150 Sum_probs=60.0
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCH-HHH-HhcCC-ccceeEEeccCCe--EEEe-
Q 030511 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP-EWE-KSYQY-EIPVLARVLSDGT--EVLM- 119 (176)
Q Consensus 46 ~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~-el~-eky~~-~VPVL~i~~idGe--~l~~- 119 (176)
..+.++.|..|||+.|..++..++++.. .....++.+-.+|+|.++ ++. ++|+. .+|+++. +.+|. .+.+
T Consensus 371 ~k~VLV~FyApWC~~Ck~m~P~~eelA~---~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTii~-Fk~g~~~~~~Y~ 446 (463)
T TIGR00424 371 KEAWLVVLYAPWCPFCQAMEASYLELAE---KLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILF-FPKHSSRPIKYP 446 (463)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHH---HhccCCcEEEEEECCCCccHHHHHHcCCCccceEEE-EECCCCCceeCC
Confidence 4456889999999999999999988742 112235788899999764 444 67887 5999973 46664 2333
Q ss_pred -ccCCHHHHHHHHHh
Q 030511 120 -ACINRFRIEAWLSQ 133 (176)
Q Consensus 120 -~~fd~deL~~~L~~ 133 (176)
+.-+.+.|.+|+..
T Consensus 447 ~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 447 SEKRDVDSLMSFVNL 461 (463)
T ss_pred CCCCCHHHHHHHHHh
Confidence 35777888777764
No 134
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=97.47 E-value=0.0015 Score=52.72 Aligned_cols=82 Identities=12% Similarity=0.097 Sum_probs=55.5
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHH----HHH-------------------hcC
Q 030511 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPE----WEK-------------------SYQ 101 (176)
Q Consensus 45 ~~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~e----l~e-------------------ky~ 101 (176)
...+.|..|+.+||+.|......|.++. ..++++.-|+++++++ +.+ .|+
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~-------~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 139 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLS-------AQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLG 139 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHH-------HcCCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcC
Confidence 3455788899999999999999998873 1367777787766543 222 234
Q ss_pred C-ccceeEEeccCCeEEEe--ccCCHHHHHHHHHh
Q 030511 102 Y-EIPVLARVLSDGTEVLM--ACINRFRIEAWLSQ 133 (176)
Q Consensus 102 ~-~VPVL~i~~idGe~l~~--~~fd~deL~~~L~~ 133 (176)
. .+|..++...+|+.... |..+++++.+.+..
T Consensus 140 v~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~ 174 (185)
T PRK15412 140 VYGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKP 174 (185)
T ss_pred CCcCCeEEEECCCceEEEEEecCCCHHHHHHHHHH
Confidence 3 47866655567875433 56777777776654
No 135
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=97.46 E-value=0.0009 Score=53.23 Aligned_cols=81 Identities=12% Similarity=0.006 Sum_probs=54.0
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCC-----------------------CHHHHHhcCC
Q 030511 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT-----------------------NPEWEKSYQY 102 (176)
Q Consensus 46 ~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIde-----------------------D~el~eky~~ 102 (176)
....+..|+.+||+.|......++++.. .++.+..|++++ +.++.+.|+.
T Consensus 63 gk~vll~F~a~wC~~C~~~~p~l~~l~~-------~~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v 135 (173)
T TIGR00385 63 GKPVLLNVWASWCPPCRAEHPYLNELAK-------DGLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGV 135 (173)
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHH-------cCCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCC
Confidence 4567888999999999999998887631 145555555432 3334445554
Q ss_pred -ccceeEEeccCCeEEEe--ccCCHHHHHHHHHh
Q 030511 103 -EIPVLARVLSDGTEVLM--ACINRFRIEAWLSQ 133 (176)
Q Consensus 103 -~VPVL~i~~idGe~l~~--~~fd~deL~~~L~~ 133 (176)
.+|..++...||+.... |..+.+++.+++.+
T Consensus 136 ~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~ 169 (173)
T TIGR00385 136 YGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLP 169 (173)
T ss_pred eeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHH
Confidence 57966554567876543 56788888777654
No 136
>PLN02309 5'-adenylylsulfate reductase
Probab=97.41 E-value=0.00059 Score=63.65 Aligned_cols=86 Identities=12% Similarity=0.191 Sum_probs=62.7
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcC-CCHHHHH-hcCC-ccceeEEeccCCe--EEEe
Q 030511 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT-TNPEWEK-SYQY-EIPVLARVLSDGT--EVLM 119 (176)
Q Consensus 45 ~~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDId-eD~el~e-ky~~-~VPVL~i~~idGe--~l~~ 119 (176)
.....++.|..|||+.|..++..++++.. .....++.+-.+|++ .+.++.. +|+. .+|+++. +.+|. .+.+
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~---~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~PTil~-f~~g~~~~v~Y 439 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAE---KLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILL-FPKNSSRPIKY 439 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHH---HhccCCeEEEEEECCCcchHHHHhhCCCceeeEEEE-EeCCCCCeeec
Confidence 44557999999999999999999988742 122236889999999 6677765 5887 6999974 35554 3333
Q ss_pred -c-cCCHHHHHHHHHhC
Q 030511 120 -A-CINRFRIEAWLSQM 134 (176)
Q Consensus 120 -~-~fd~deL~~~L~~~ 134 (176)
+ .-+.+.|.+|+.+.
T Consensus 440 ~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 440 PSEKRDVDSLLSFVNSL 456 (457)
T ss_pred CCCCcCHHHHHHHHHHh
Confidence 2 47888888888753
No 137
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.40 E-value=0.0011 Score=44.90 Aligned_cols=68 Identities=15% Similarity=0.186 Sum_probs=45.4
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCC---CHHHHHhcCC-ccceeEEeccCCeEEEeccCCHH
Q 030511 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT---NPEWEKSYQY-EIPVLARVLSDGTEVLMACINRF 125 (176)
Q Consensus 50 ItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIde---D~el~eky~~-~VPVL~i~~idGe~l~~~~fd~d 125 (176)
++||+.++|++|.+++-.|+.+. .+++|+.+.++. .+++.+.... .||+|.. .||..+. +..
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~--------~~i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~~g~~l~----es~ 66 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETG--------LGDDVELVLVNPWSDDESLLAVNPLGKIPALVL--DDGEALF----DSR 66 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhC--------CCCCcEEEEcCcccCChHHHHhCCCCCCCEEEE--CCCCEEE----CHH
Confidence 47999999999999999998731 178888888863 2344443333 6999972 3665542 444
Q ss_pred HHHHHH
Q 030511 126 RIEAWL 131 (176)
Q Consensus 126 eL~~~L 131 (176)
.|.++|
T Consensus 67 aI~~yL 72 (73)
T cd03049 67 VICEYL 72 (73)
T ss_pred HHHhhh
Confidence 454443
No 138
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=97.39 E-value=0.0011 Score=62.78 Aligned_cols=89 Identities=13% Similarity=0.087 Sum_probs=63.8
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEE----------------------------EEcCCCHHH
Q 030511 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQV----------------------------RDITTNPEW 96 (176)
Q Consensus 45 ~~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~ee----------------------------IDIdeD~el 96 (176)
...+.++.|+.+||+.|......|+++.. .....++.+.. +++|.+.++
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~---e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~l 131 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQ---DAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTL 131 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHH---HhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHH
Confidence 55667999999999999999999988642 01112333322 445556677
Q ss_pred HHhcCC-ccceeEEeccCCeEEE--eccCCHHHHHHHHHhCCc
Q 030511 97 EKSYQY-EIPVLARVLSDGTEVL--MACINRFRIEAWLSQMSL 136 (176)
Q Consensus 97 ~eky~~-~VPVL~i~~idGe~l~--~~~fd~deL~~~L~~~~l 136 (176)
.+.|+. .+|.+++.+.+|+.+. .|..+.++|.++++....
T Consensus 132 ak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~~~ 174 (521)
T PRK14018 132 AQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRNPNA 174 (521)
T ss_pred HHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHhhh
Confidence 788886 5999976557888653 378999999999986554
No 139
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=97.36 E-value=0.001 Score=51.57 Aligned_cols=77 Identities=19% Similarity=0.229 Sum_probs=58.9
Q ss_pred eEEEEeC--CCCC---chHHHHHHHHHHhccCCCCCCCCcceEEEEcC-----CCHHHHHhcCC---ccceeEEeccCCe
Q 030511 49 KLVLYSK--PGCC---LCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT-----TNPEWEKSYQY---EIPVLARVLSDGT 115 (176)
Q Consensus 49 kItLYTk--pgC~---lCe~aKe~Le~l~~~~~~~~~~gie~eeIDId-----eD~el~eky~~---~VPVL~i~~idGe 115 (176)
-++-|.. |||+ .|+.+.....+.. ..+.+-+||++ +|.++.++|+. ..|+|. .|.+|+
T Consensus 21 vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa--------~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPTl~-lF~~g~ 91 (116)
T cd03007 21 SLVKFDTAYPYGEKHEAFTRLAESSASAT--------DDLLVAEVGIKDYGEKLNMELGERYKLDKESYPVIY-LFHGGD 91 (116)
T ss_pred EEEEEeCCCCCCCChHHHHHHHHHHHhhc--------CceEEEEEecccccchhhHHHHHHhCCCcCCCCEEE-EEeCCC
Confidence 5777888 9999 8998887776642 14889999994 57789999998 499997 357774
Q ss_pred ----EEEecc-CCHHHHHHHHHhC
Q 030511 116 ----EVLMAC-INRFRIEAWLSQM 134 (176)
Q Consensus 116 ----~l~~~~-fd~deL~~~L~~~ 134 (176)
..+-|+ .+.+.|.+|+.++
T Consensus 92 ~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 92 FENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred cCCCccCCCCcccHHHHHHHHHhc
Confidence 234464 8889999998875
No 140
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=97.34 E-value=0.0018 Score=45.05 Aligned_cols=65 Identities=20% Similarity=0.311 Sum_probs=44.8
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCC-----CHHHHHhcC-C-ccceeEEeccCCeEEEeccC
Q 030511 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT-----NPEWEKSYQ-Y-EIPVLARVLSDGTEVLMACI 122 (176)
Q Consensus 50 ItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIde-----D~el~eky~-~-~VPVL~i~~idGe~l~~~~f 122 (176)
+++|..++|+.|.+++-.|+.+ |++|+.++++- .++++.+.+ . .||+|. .||..+.
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~----------gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~---~~g~~l~---- 63 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEK----------GLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI---HGDNIIC---- 63 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHc----------CCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEE---ECCEEEE----
Confidence 4799999999999999988876 77777776652 122333433 3 699998 6776543
Q ss_pred CHHHHHHHH
Q 030511 123 NRFRIEAWL 131 (176)
Q Consensus 123 d~deL~~~L 131 (176)
+...|..+|
T Consensus 64 Es~aI~~yL 72 (73)
T cd03052 64 DPTQIIDYL 72 (73)
T ss_pred cHHHHHHHh
Confidence 455555544
No 141
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.0018 Score=49.80 Aligned_cols=77 Identities=22% Similarity=0.327 Sum_probs=58.6
Q ss_pred CceEEEEe-----CCCCCchHHHHHHHHHHhccCCCCCCCC-cceEEEEcCCCHHHHHh---cCC--ccceeEEeccCCe
Q 030511 47 TRKLVLYS-----KPGCCLCDGLKEKLQAAFLLSGPDSLHD-VDLQVRDITTNPEWEKS---YQY--EIPVLARVLSDGT 115 (176)
Q Consensus 47 ~~kItLYT-----kpgC~lCe~aKe~Le~l~~~~~~~~~~g-ie~eeIDIdeD~el~ek---y~~--~VPVL~i~~idGe 115 (176)
...|.||- .|.|++-..+-.+|... | ++|..+||-+|+++++. |.. .+|.|. ++|+
T Consensus 14 ~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~----------g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLy---i~GE 80 (105)
T COG0278 14 ENPVVLFMKGTPEFPQCGFSAQAVQILSAC----------GVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLY---VNGE 80 (105)
T ss_pred cCceEEEecCCCCCCCCCccHHHHHHHHHc----------CCcceeEEeeccCHHHHhccHhhcCCCCCceee---ECCE
Confidence 44677875 47799999999999886 6 79999999999998874 542 699999 8999
Q ss_pred EEEeccCCHHHHHHHHHhCCchhHH
Q 030511 116 EVLMACINRFRIEAWLSQMSLDCVM 140 (176)
Q Consensus 116 ~l~~~~fd~deL~~~L~~~~l~~~~ 140 (176)
.++ +.|=+.+..++..|..++
T Consensus 81 fvG----G~DIv~Em~q~GELq~~l 101 (105)
T COG0278 81 FVG----GCDIVREMYQSGELQTLL 101 (105)
T ss_pred Eec----cHHHHHHHHHcchHHHHH
Confidence 875 345555555555555544
No 142
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.30 E-value=0.0016 Score=51.60 Aligned_cols=99 Identities=10% Similarity=0.111 Sum_probs=74.3
Q ss_pred ceeccccccccCCCCCCCCceEEEEeCCC--CCchHHHHHHHHHHhccCCCCCCC--CcceEEEEcCCCHHHHHhcCC-c
Q 030511 29 WGFSPLAYSSSSSSSSSSTRKLVLYSKPG--CCLCDGLKEKLQAAFLLSGPDSLH--DVDLQVRDITTNPEWEKSYQY-E 103 (176)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~kItLYTkpg--C~lCe~aKe~Le~l~~~~~~~~~~--gie~eeIDIdeD~el~eky~~-~ 103 (176)
+|+.++.+.+...=-+.....+.+++... ++=+..+--+|+++. .++. .+.+-.+|||+++++..+||. .
T Consensus 17 ~g~~~~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa-----~e~~~~~v~~akVDiD~~~~LA~~fgV~s 91 (132)
T PRK11509 17 RGWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELL-----REFPDYTWQVAIADLEQSEAIGDRFGVFR 91 (132)
T ss_pred cCCCccccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHH-----HHhcCCceEEEEEECCCCHHHHHHcCCcc
Confidence 47788877666544445556777777544 788888888888874 2222 378999999999999999997 6
Q ss_pred cceeEEeccCCeEEEe--ccCCHHHHHHHHHh
Q 030511 104 IPVLARVLSDGTEVLM--ACINRFRIEAWLSQ 133 (176)
Q Consensus 104 VPVL~i~~idGe~l~~--~~fd~deL~~~L~~ 133 (176)
||.++ .+.||+.+.. |..+++++.+++++
T Consensus 92 iPTLl-~FkdGk~v~~i~G~~~k~~l~~~I~~ 122 (132)
T PRK11509 92 FPATL-VFTGGNYRGVLNGIHPWAELINLMRG 122 (132)
T ss_pred CCEEE-EEECCEEEEEEeCcCCHHHHHHHHHH
Confidence 99998 4699997654 55788888888864
No 143
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.24 E-value=0.0014 Score=57.73 Aligned_cols=88 Identities=15% Similarity=0.132 Sum_probs=63.7
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCC--CCcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCeE----EE
Q 030511 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSL--HDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTE----VL 118 (176)
Q Consensus 46 ~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~--~gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe~----l~ 118 (176)
....+..|..+||+.|......++++... ... .++.+-.+|++.|+-.. |+. .+|.++. +.+|.. ..
T Consensus 364 ~~~vlv~f~a~wC~~C~~~~p~~~~~~~~---~~~~~~~i~~~~id~~~n~~~~--~~i~~~Pt~~~-~~~~~~~~~~~~ 437 (462)
T TIGR01130 364 TKDVLVEFYAPWCGHCKNLAPIYEELAEK---YKDAESDVVIAKMDATANDVPP--FEVEGFPTIKF-VPAGKKSEPVPY 437 (462)
T ss_pred CCeEEEEEECCCCHhHHHHHHHHHHHHHH---hhcCCCcEEEEEEECCCCccCC--CCccccCEEEE-EeCCCCcCceEe
Confidence 44568889999999999999999887521 122 15788899998775332 665 6899984 355543 33
Q ss_pred eccCCHHHHHHHHHhCCchhH
Q 030511 119 MACINRFRIEAWLSQMSLDCV 139 (176)
Q Consensus 119 ~~~fd~deL~~~L~~~~l~~~ 139 (176)
.|..+.+.|.++|.+.+..++
T Consensus 438 ~g~~~~~~l~~~l~~~~~~~~ 458 (462)
T TIGR01130 438 DGDRTLEDFSKFIAKHATFPL 458 (462)
T ss_pred cCcCCHHHHHHHHHhcCCCCC
Confidence 477899999999998876543
No 144
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=97.21 E-value=0.0016 Score=44.23 Aligned_cols=57 Identities=18% Similarity=0.206 Sum_probs=42.4
Q ss_pred CCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCCccceeEEeccCCeEEEeccCCHHHHHHHHHh
Q 030511 57 GCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGTEVLMACINRFRIEAWLSQ 133 (176)
Q Consensus 57 gC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~~VPVL~i~~idGe~l~~~~fd~deL~~~L~~ 133 (176)
.|++|..++.+|+.. |++|+.++++... ..-.-.||++. .+|+.+ .+...|.++|++
T Consensus 15 ~sp~~~~v~~~L~~~----------~i~~~~~~~~~~~---~~p~g~vP~l~---~~g~~l----~es~~I~~yL~~ 71 (72)
T cd03054 15 LSPECLKVETYLRMA----------GIPYEVVFSSNPW---RSPTGKLPFLE---LNGEKI----ADSEKIIEYLKK 71 (72)
T ss_pred CCHHHHHHHHHHHhC----------CCceEEEecCCcc---cCCCcccCEEE---ECCEEE----cCHHHHHHHHhh
Confidence 899999999999876 8999999997532 11123699998 677654 355777777765
No 145
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=97.20 E-value=0.0024 Score=51.07 Aligned_cols=92 Identities=15% Similarity=0.252 Sum_probs=59.7
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhc-cCCCC---CCCCcceEEEEcCCCHH-------------------------H
Q 030511 46 STRKLVLYSKPGCCLCDGLKEKLQAAFL-LSGPD---SLHDVDLQVRDITTNPE-------------------------W 96 (176)
Q Consensus 46 ~~~kItLYTkpgC~lCe~aKe~Le~l~~-~~~~~---~~~gie~eeIDIdeD~e-------------------------l 96 (176)
..+-+..|+.+||+.|......|.++.. +.... ...++++.-|+.|++.+ +
T Consensus 25 gk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~l 104 (146)
T cd03008 25 NRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRREL 104 (146)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHHH
Confidence 4467888899999999999999987521 00000 11257777777775532 3
Q ss_pred HHhcCC-ccceeEEeccCCeEEEeccCCHHHHHHHHHhCCchhHHHHh
Q 030511 97 EKSYQY-EIPVLARVLSDGTEVLMACINRFRIEAWLSQMSLDCVMAYQ 143 (176)
Q Consensus 97 ~eky~~-~VPVL~i~~idGe~l~~~~fd~deL~~~L~~~~l~~~~~~~ 143 (176)
..+|+. .+|++++...+|+.+. .+.+..+++.|.+|.-.||
T Consensus 105 ~~~y~v~~iPt~vlId~~G~Vv~------~~~~~~i~~~g~~~~~~w~ 146 (146)
T cd03008 105 EAQFSVEELPTVVVLKPDGDVLA------ANAVDEILRLGPACFRNWQ 146 (146)
T ss_pred HHHcCCCCCCEEEEECCCCcEEe------eChHHHHHHHHHHHHHhcC
Confidence 334554 5899987666787764 3566677777777765543
No 146
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=97.19 E-value=0.0025 Score=46.71 Aligned_cols=77 Identities=13% Similarity=0.148 Sum_probs=50.5
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEc-----------------------CCCHHHHHhcC
Q 030511 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDI-----------------------TTNPEWEKSYQ 101 (176)
Q Consensus 45 ~~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDI-----------------------deD~el~eky~ 101 (176)
.....+..|+.+||+.|......|.++.. .+.+..|.+ +.+.++.++|+
T Consensus 19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~--------~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 90 (123)
T cd03011 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAA--------DYPVVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWG 90 (123)
T ss_pred CCCEEEEEEECCcChhhhhhChHHHHHHh--------hCCEEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCC
Confidence 34668889999999999999988887631 133333322 33456777787
Q ss_pred C-ccceeEEeccCCeEE--EeccCCHHHHHHH
Q 030511 102 Y-EIPVLARVLSDGTEV--LMACINRFRIEAW 130 (176)
Q Consensus 102 ~-~VPVL~i~~idGe~l--~~~~fd~deL~~~ 130 (176)
. .+|.+++...+| .. ..|..++++|.+.
T Consensus 91 i~~~P~~~vid~~g-i~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 91 VSVTPAIVIVDPGG-IVFVTTGVTSEWGLRLR 121 (123)
T ss_pred CCcccEEEEEcCCC-eEEEEeccCCHHHHHhh
Confidence 6 589887654455 33 3356778877654
No 147
>PRK10026 arsenate reductase; Provisional
Probab=97.18 E-value=0.00047 Score=55.12 Aligned_cols=38 Identities=13% Similarity=0.370 Sum_probs=33.9
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCH
Q 030511 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP 94 (176)
Q Consensus 47 ~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~ 94 (176)
|.+|++|+.|+|.-|.+|+++|++. +++|+++|+-+++
T Consensus 1 m~~i~iY~~p~Cst~RKA~~wL~~~----------gi~~~~~d~~~~p 38 (141)
T PRK10026 1 MSNITIYHNPACGTSRNTLEMIRNS----------GTEPTIIHYLETP 38 (141)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHC----------CCCcEEEeeeCCC
Confidence 3579999999999999999999885 9999999997653
No 148
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=97.17 E-value=0.0021 Score=44.48 Aligned_cols=45 Identities=16% Similarity=0.133 Sum_probs=34.8
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCC
Q 030511 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN 93 (176)
Q Consensus 46 ~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD 93 (176)
....+.+|..+||+.|......|.++.. .....++.+..|+++.+
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~---~~~~~~~~~~~v~~d~~ 63 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAK---EYKDDGVEVVGVNVDDD 63 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHH---HhCCCCeEEEEEECCCC
Confidence 4567889999999999999888887641 12224788999999886
No 149
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.16 E-value=0.0024 Score=55.63 Aligned_cols=78 Identities=9% Similarity=0.072 Sum_probs=62.7
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCC-----------HHHHHhcCC-ccceeEEeccC-C
Q 030511 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN-----------PEWEKSYQY-EIPVLARVLSD-G 114 (176)
Q Consensus 48 ~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD-----------~el~eky~~-~VPVL~i~~id-G 114 (176)
-.+.+|.+..|++|+..-.+|..+. ..+|+++..|++|+. ....+++|. .+|.++.+..+ +
T Consensus 152 ~gL~fFy~~~C~~C~~~apil~~fa------~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~ 225 (256)
T TIGR02739 152 YGLFFFYRGKSPISQKMAPVIQAFA------KEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQ 225 (256)
T ss_pred eeEEEEECCCCchhHHHHHHHHHHH------HHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCC
Confidence 4689999999999999999999883 457999999999954 457788887 48999866555 3
Q ss_pred e--EEEeccCCHHHHHHHH
Q 030511 115 T--EVLMACINRFRIEAWL 131 (176)
Q Consensus 115 e--~l~~~~fd~deL~~~L 131 (176)
+ .+.+|..+.++|.+-+
T Consensus 226 ~~~pv~~G~iS~deL~~Ri 244 (256)
T TIGR02739 226 KMSPLAYGFISQDELKERI 244 (256)
T ss_pred cEEEEeeccCCHHHHHHHH
Confidence 3 4777889999987654
No 150
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=97.11 E-value=0.0028 Score=47.15 Aligned_cols=62 Identities=24% Similarity=0.334 Sum_probs=48.6
Q ss_pred CCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcC--CCHHHHHhcCC--ccceeEEeccCCeEEEeccCCHHHHHHHH
Q 030511 56 PGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--TNPEWEKSYQY--EIPVLARVLSDGTEVLMACINRFRIEAWL 131 (176)
Q Consensus 56 pgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDId--eD~el~eky~~--~VPVL~i~~idGe~l~~~~fd~deL~~~L 131 (176)
..|++|+++.-.|+.+ |++|+.++|+ ..++++.+..- .||||. .+|..+ ++...|.++|
T Consensus 20 g~cpf~~rvrl~L~eK----------gi~ye~~~vd~~~~p~~~~~~nP~g~vPvL~---~~~~~i----~eS~~I~eYL 82 (91)
T cd03061 20 GNCPFCQRLFMVLWLK----------GVVFNVTTVDMKRKPEDLKDLAPGTQPPFLL---YNGEVK----TDNNKIEEFL 82 (91)
T ss_pred CCChhHHHHHHHHHHC----------CCceEEEEeCCCCCCHHHHHhCCCCCCCEEE---ECCEEe----cCHHHHHHHH
Confidence 5699999999999886 8888888786 45677777653 699998 566554 5888898888
Q ss_pred HhC
Q 030511 132 SQM 134 (176)
Q Consensus 132 ~~~ 134 (176)
.+.
T Consensus 83 de~ 85 (91)
T cd03061 83 EET 85 (91)
T ss_pred HHH
Confidence 765
No 151
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=97.07 E-value=0.0062 Score=49.45 Aligned_cols=83 Identities=20% Similarity=0.320 Sum_probs=53.0
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCC--------------------CHHHHHhcCC-c
Q 030511 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT--------------------NPEWEKSYQY-E 103 (176)
Q Consensus 45 ~~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIde--------------------D~el~eky~~-~ 103 (176)
...+.|..|+.+||+.|......+.+.. ...++.+.-+..++ +.++.+.|+. .
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~------~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~ 146 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIA------RAEETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGK 146 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHH------HhcCCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCc
Confidence 4456788899999999999888887763 22355555555321 2233445554 4
Q ss_pred cceeEEeccCCeEEEeccC-CHHHHHHHHHh
Q 030511 104 IPVLARVLSDGTEVLMACI-NRFRIEAWLSQ 133 (176)
Q Consensus 104 VPVL~i~~idGe~l~~~~f-d~deL~~~L~~ 133 (176)
+|..++...+|+....+.. ..+.+.++|++
T Consensus 147 ~P~~~lID~~G~I~~~g~~~~~~~le~ll~~ 177 (189)
T TIGR02661 147 IPYGVLLDQDGKIRAKGLTNTREHLESLLEA 177 (189)
T ss_pred cceEEEECCCCeEEEccCCCCHHHHHHHHHH
Confidence 7877655567887665543 44667777653
No 152
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=97.04 E-value=0.00075 Score=52.20 Aligned_cols=37 Identities=19% Similarity=0.474 Sum_probs=33.3
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCH
Q 030511 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP 94 (176)
Q Consensus 48 ~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~ 94 (176)
+.|++|+.|.|.-|..|+++|++. |++|+++|+.+++
T Consensus 1 ~~itiy~~p~C~t~rka~~~L~~~----------gi~~~~~~y~~~~ 37 (117)
T COG1393 1 MMITIYGNPNCSTCRKALAWLEEH----------GIEYTFIDYLKTP 37 (117)
T ss_pred CeEEEEeCCCChHHHHHHHHHHHc----------CCCcEEEEeecCC
Confidence 359999999999999999999885 9999999998653
No 153
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=97.00 E-value=0.003 Score=47.85 Aligned_cols=75 Identities=12% Similarity=0.065 Sum_probs=44.7
Q ss_pred eEEEEeCCCCC------chHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHH----HHHhcC---------Ccc-ceeE
Q 030511 49 KLVLYSKPGCC------LCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPE----WEKSYQ---------YEI-PVLA 108 (176)
Q Consensus 49 kItLYTkpgC~------lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~e----l~eky~---------~~V-PVL~ 108 (176)
.|.+|++.-=+ -|+.+..+|+.. +|+|++|||..|++ ++++.+ ... |.|+
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~----------kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF 71 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAK----------KIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIF 71 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHT----------T--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEE
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHc----------CCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEE
Confidence 36666644433 366777777775 89999999999876 444442 224 7888
Q ss_pred EeccCCeEEEeccCCHHHHHHHHHhCCchhHH
Q 030511 109 RVLSDGTEVLMACINRFRIEAWLSQMSLDCVM 140 (176)
Q Consensus 109 i~~idGe~l~~~~fd~deL~~~L~~~~l~~~~ 140 (176)
.||+.++ |.+++..+-+...|...|
T Consensus 72 ---~~~~Y~G----dye~f~ea~E~~~L~~fL 96 (99)
T PF04908_consen 72 ---NGDEYCG----DYEDFEEANENGELEEFL 96 (99)
T ss_dssp ---ETTEEEE----EHHHHHHHHCTT-HHHHH
T ss_pred ---eCCEEEe----eHHHHHHHHhhCHHHHHh
Confidence 7888765 667777777766655443
No 154
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.00 E-value=0.0039 Score=54.10 Aligned_cols=79 Identities=8% Similarity=0.041 Sum_probs=61.9
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCC-----------CHHHHHhcCC-ccceeEEeccCC
Q 030511 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT-----------NPEWEKSYQY-EIPVLARVLSDG 114 (176)
Q Consensus 47 ~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIde-----------D~el~eky~~-~VPVL~i~~idG 114 (176)
.-.+.+|.+..|++|+..-.+|..+. +.+|+++..|.+|. |....++++. .+|.|+.+..+.
T Consensus 144 ~~GL~fFy~s~Cp~C~~~aPil~~fa------~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t 217 (248)
T PRK13703 144 HYGLMFFYRGQDPIDGQLAQVINDFR------DTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKS 217 (248)
T ss_pred cceEEEEECCCCchhHHHHHHHHHHH------HHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCC
Confidence 34689999999999999999999983 55799999999985 2335567776 489998654444
Q ss_pred -e--EEEeccCCHHHHHHHH
Q 030511 115 -T--EVLMACINRFRIEAWL 131 (176)
Q Consensus 115 -e--~l~~~~fd~deL~~~L 131 (176)
+ .+.+|..+.++|.+-+
T Consensus 218 ~~~~pv~~G~iS~deL~~Ri 237 (248)
T PRK13703 218 GSVRPLSYGFITQDDLAKRF 237 (248)
T ss_pred CcEEEEeeccCCHHHHHHHH
Confidence 3 4778889999987655
No 155
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=96.99 E-value=0.00072 Score=51.09 Aligned_cols=35 Identities=17% Similarity=0.461 Sum_probs=31.6
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCH
Q 030511 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP 94 (176)
Q Consensus 50 ItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~ 94 (176)
|++|+.|+|.-|.+++.+|++. +++|+++||.+++
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~----------~i~~~~~di~~~~ 35 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEA----------GIEPEIVEYLKTP 35 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHC----------CCCeEEEecccCC
Confidence 5899999999999999999885 9999999997653
No 156
>PRK10387 glutaredoxin 2; Provisional
Probab=96.98 E-value=0.0041 Score=49.61 Aligned_cols=69 Identities=13% Similarity=0.336 Sum_probs=50.3
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCH-HHHHhc-C-CccceeEEeccCCeEEEeccCCHHH
Q 030511 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP-EWEKSY-Q-YEIPVLARVLSDGTEVLMACINRFR 126 (176)
Q Consensus 50 ItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~-el~eky-~-~~VPVL~i~~idGe~l~~~~fd~de 126 (176)
++||+.+.||+|.+++-.|+.+ |++|+.++++.++ ....+. . ..||||.. .||..+ .+...
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~----------gi~y~~~~~~~~~~~~~~~~~p~~~VPvL~~--~~g~~l----~eS~a 64 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLK----------NIPVELIVLANDDEATPIRMIGQKQVPILQK--DDGSYM----PESLD 64 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHc----------CCCeEEEEcCCCchhhHHHhcCCcccceEEe--cCCeEe----cCHHH
Confidence 4799999999999999999886 8999999886432 212222 2 36999951 456554 47888
Q ss_pred HHHHHHhC
Q 030511 127 IEAWLSQM 134 (176)
Q Consensus 127 L~~~L~~~ 134 (176)
|..+|.+.
T Consensus 65 I~~yL~~~ 72 (210)
T PRK10387 65 IVHYIDEL 72 (210)
T ss_pred HHHHHHHh
Confidence 88888665
No 157
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=96.97 E-value=0.0027 Score=47.50 Aligned_cols=71 Identities=15% Similarity=0.265 Sum_probs=47.7
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHhccCCCCC-CCCcceEEEEcCCCH------------------------HHHHh
Q 030511 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDS-LHDVDLQVRDITTNP------------------------EWEKS 99 (176)
Q Consensus 45 ~~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~-~~gie~eeIDIdeD~------------------------el~ek 99 (176)
...+.+..|+.+||+.|......|.++.. +-.. ..++++..+++|.+. .+.++
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~--~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYE--KLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRT 94 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHH--HHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHH
Confidence 34456888889999999998888876521 0011 125777777887553 34456
Q ss_pred cCC-ccceeEEeccCCeEE
Q 030511 100 YQY-EIPVLARVLSDGTEV 117 (176)
Q Consensus 100 y~~-~VPVL~i~~idGe~l 117 (176)
|+. .+|.+++...+|+.+
T Consensus 95 ~~v~~~P~~~lid~~G~i~ 113 (131)
T cd03009 95 FKIEGIPTLIILDADGEVV 113 (131)
T ss_pred cCCCCCCEEEEECCCCCEE
Confidence 776 589998765678765
No 158
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=96.94 E-value=0.0078 Score=48.80 Aligned_cols=69 Identities=14% Similarity=0.254 Sum_probs=50.7
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCC--HHHHHhcC--CccceeEEeccCCeEEEeccCCH
Q 030511 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN--PEWEKSYQ--YEIPVLARVLSDGTEVLMACINR 124 (176)
Q Consensus 49 kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD--~el~eky~--~~VPVL~i~~idGe~l~~~~fd~ 124 (176)
.++||+.++|+.|..+.-.|+.+ |++|+.+.|+-+ ++.+.+.+ -.||||. .||..+ +..
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~----------gl~~e~~~v~~~~~~~~~~~~nP~g~VPvL~---~~g~~l----~ES 72 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEK----------GVSVEIEQVEKDNLPQDLIDLNPYQSVPTLV---DRELTL----YES 72 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHC----------CCCCEEEeCCcccCCHHHHHhCCCCCCCEEE---ECCEEe----eCH
Confidence 37999999999999999999876 888888888732 22333333 2699998 677655 356
Q ss_pred HHHHHHHHhC
Q 030511 125 FRIEAWLSQM 134 (176)
Q Consensus 125 deL~~~L~~~ 134 (176)
..|..+|.+.
T Consensus 73 ~AIl~YL~~~ 82 (211)
T PRK09481 73 RIIMEYLDER 82 (211)
T ss_pred HHHHHHHHHh
Confidence 6788877655
No 159
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=96.93 E-value=0.0019 Score=48.37 Aligned_cols=66 Identities=14% Similarity=0.135 Sum_probs=47.0
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhccCCCCCC-CCcceEEEEcC--CCHHHHHhcCC-ccceeEEeccCCe
Q 030511 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSL-HDVDLQVRDIT--TNPEWEKSYQY-EIPVLARVLSDGT 115 (176)
Q Consensus 47 ~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~-~gie~eeIDId--eD~el~eky~~-~VPVL~i~~idGe 115 (176)
...+..|+.+||+.|...+..++++.. ..... ..+.+-.+|.+ +++++.++|+. .+|++++ +.+|.
T Consensus 20 ~~vvV~f~a~wC~~C~~~~~~~~~la~--~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~l-f~~~~ 89 (114)
T cd02992 20 SAWLVEFYASWCGHCRAFAPTWKKLAR--DLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLRY-FPPFS 89 (114)
T ss_pred CeEEEEEECCCCHHHHHHhHHHHHHHH--HHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEEE-ECCCC
Confidence 467899999999999999999988741 00011 13677777865 45678899997 5999874 24443
No 160
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=96.93 E-value=0.0077 Score=40.23 Aligned_cols=65 Identities=18% Similarity=0.282 Sum_probs=43.2
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCC------CHHHHHhcC-CccceeEEeccCCeEEEeccC
Q 030511 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT------NPEWEKSYQ-YEIPVLARVLSDGTEVLMACI 122 (176)
Q Consensus 50 ItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIde------D~el~eky~-~~VPVL~i~~idGe~l~~~~f 122 (176)
++||+.+.|+.|..++..|+.. |++|+.++++. .+++.+... ..+|++. .+|..+.
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~----------gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~---~~~~~l~---- 63 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLK----------GLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLV---IDGLVLT---- 63 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHc----------CCCCeEEEecCccCCcCChHHHHhCCCCCCCEEE---ECCEEEE----
Confidence 3799999999999999999876 77777766652 123333322 3699998 5665542
Q ss_pred CHHHHHHHH
Q 030511 123 NRFRIEAWL 131 (176)
Q Consensus 123 d~deL~~~L 131 (176)
+...|.++|
T Consensus 64 es~aI~~yL 72 (73)
T cd03042 64 QSLAIIEYL 72 (73)
T ss_pred cHHHHHHHh
Confidence 444444443
No 161
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=96.86 E-value=0.0043 Score=52.54 Aligned_cols=80 Identities=15% Similarity=0.277 Sum_probs=54.7
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEE--E---------------------------------
Q 030511 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVR--D--------------------------------- 89 (176)
Q Consensus 45 ~~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeI--D--------------------------------- 89 (176)
....+|++||-|.||+|+++.+.|.++.. .++.+..+ .
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~-------~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~ 178 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNA-------LGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKD 178 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhc-------CCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCC
Confidence 45668999999999999999999988631 12333222 1
Q ss_pred ---------cCCCHHHHHhcCC-ccceeEEeccCCeEEEeccCCHHHHHHHHHhC
Q 030511 90 ---------ITTNPEWEKSYQY-EIPVLARVLSDGTEVLMACINRFRIEAWLSQM 134 (176)
Q Consensus 90 ---------IdeD~el~eky~~-~VPVL~i~~idGe~l~~~~fd~deL~~~L~~~ 134 (176)
|+++.++.+++|. ..|.++. .||+.+ -|..+.++|.++|++.
T Consensus 179 ~~~~~c~~~v~~~~~la~~lgi~gTPtiv~--~~G~~~-~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 179 VSPASCDVDIADHYALGVQFGVQGTPAIVL--SNGTLV-PGYQGPKEMKAFLDEH 230 (232)
T ss_pred CCcccccchHHHhHHHHHHcCCccccEEEE--cCCeEe-eCCCCHHHHHHHHHHc
Confidence 1222334555665 5899882 588765 4667899999999864
No 162
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=96.78 E-value=0.014 Score=43.17 Aligned_cols=84 Identities=14% Similarity=0.075 Sum_probs=55.3
Q ss_pred ceEEEEeCCCCCchHHHHH-HHHHHhccCCCCCCCCcceEEEEcCC--CHHHHHhcCC-ccceeEEecc-CCeEEEe--c
Q 030511 48 RKLVLYSKPGCCLCDGLKE-KLQAAFLLSGPDSLHDVDLQVRDITT--NPEWEKSYQY-EIPVLARVLS-DGTEVLM--A 120 (176)
Q Consensus 48 ~kItLYTkpgC~lCe~aKe-~Le~l~~~~~~~~~~gie~eeIDIde--D~el~eky~~-~VPVL~i~~i-dGe~l~~--~ 120 (176)
.-++.++.+||+.|+..++ .|.+... .+ .-...+-+-.+|+++ ..++...|+. .+|.+++... +|+.+.. |
T Consensus 19 ~llv~~~~~~c~~c~~~~~~vl~~~~v-~~-~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~~G 96 (114)
T cd02958 19 WLLVYLQSEDEFDSQVLNRDLWSNESV-KE-FIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVWSG 96 (114)
T ss_pred eEEEEEecCCcchHHHHHHHHcCCHHH-HH-HHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEEEcC
Confidence 3467778999999999865 3432110 00 001245566678874 3467788886 6999986545 7876554 7
Q ss_pred cCCHHHHHHHHHh
Q 030511 121 CINRFRIEAWLSQ 133 (176)
Q Consensus 121 ~fd~deL~~~L~~ 133 (176)
..+++++...|.+
T Consensus 97 ~~~~~~f~~~L~~ 109 (114)
T cd02958 97 NITPEDLLSQLIE 109 (114)
T ss_pred CCCHHHHHHHHHH
Confidence 7888888888765
No 163
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.78 E-value=0.0097 Score=55.76 Aligned_cols=82 Identities=16% Similarity=0.183 Sum_probs=63.2
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCe---EEEecc
Q 030511 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGT---EVLMAC 121 (176)
Q Consensus 46 ~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe---~l~~~~ 121 (176)
.+..+.+|+.++|..|.+++++|+.+..++ ..+.++++|..++.+.+++|+. .+|.+.+...+|+ ..|+|-
T Consensus 366 ~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s-----~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~ 440 (555)
T TIGR03143 366 NPVTLLLFLDGSNEKSAELQSFLGEFASLS-----EKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGV 440 (555)
T ss_pred CCEEEEEEECCCchhhHHHHHHHHHHHhcC-----CcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEec
Confidence 345788999999999999999999986432 3789999999999999999997 5899875322443 556666
Q ss_pred CCHHHHHHHHH
Q 030511 122 INRFRIEAWLS 132 (176)
Q Consensus 122 fd~deL~~~L~ 132 (176)
+.--|+..++.
T Consensus 441 P~G~Ef~s~i~ 451 (555)
T TIGR03143 441 PSGHELNSFIL 451 (555)
T ss_pred CccHhHHHHHH
Confidence 77777766653
No 164
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=96.76 E-value=0.0074 Score=40.86 Aligned_cols=66 Identities=21% Similarity=0.094 Sum_probs=45.1
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHH---HHhcC--CccceeEEeccCCeEEEeccCCH
Q 030511 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEW---EKSYQ--YEIPVLARVLSDGTEVLMACINR 124 (176)
Q Consensus 50 ItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el---~eky~--~~VPVL~i~~idGe~l~~~~fd~ 124 (176)
++||..++|+.|..++-.|+.. |++|+.++++..... +.+.+ -.||+|. .+|..+. +.
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~----------gi~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~---~~~~~l~----es 63 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADA----------GVEYEDVRITYEEWPELDLKPTLPFGQLPVLE---IDGKKLT----QS 63 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHC----------CCCcEEEEeCHHHhhhhhhccCCcCCCCCEEE---ECCEEEE----ec
Confidence 4789999999999999999886 888988888732211 12222 2599998 5665542 44
Q ss_pred HHHHHHHH
Q 030511 125 FRIEAWLS 132 (176)
Q Consensus 125 deL~~~L~ 132 (176)
..|..+|.
T Consensus 64 ~aI~~yL~ 71 (72)
T cd03039 64 NAILRYLA 71 (72)
T ss_pred HHHHHHhh
Confidence 55555543
No 165
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=96.75 E-value=0.017 Score=39.61 Aligned_cols=65 Identities=15% Similarity=0.205 Sum_probs=44.3
Q ss_pred EEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCC----HHHHHhcC--CccceeEEecc-CCeEEEeccCC
Q 030511 51 VLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN----PEWEKSYQ--YEIPVLARVLS-DGTEVLMACIN 123 (176)
Q Consensus 51 tLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD----~el~eky~--~~VPVL~i~~i-dGe~l~~~~fd 123 (176)
+||+.++|+.|..++-.|+.. |++|+.++|+-. .+.+.+.. -.||||. . ||..+. +
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~----------gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~---~~~g~~l~----e 64 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYN----------GLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFE---GADGFCLF----E 64 (75)
T ss_pred eEecCCCCccHHHHHHHHHHc----------CCceEEEecccccccCCHHHHHhCCCCCCCEEE---cCCCCEEe----e
Confidence 689999999999999999876 777777777632 22333333 3699998 4 465542 4
Q ss_pred HHHHHHHHH
Q 030511 124 RFRIEAWLS 132 (176)
Q Consensus 124 ~deL~~~L~ 132 (176)
...|.++|.
T Consensus 65 s~aI~~yL~ 73 (75)
T cd03044 65 SNAIAYYVA 73 (75)
T ss_pred HHHHHHHHh
Confidence 555666554
No 166
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=96.74 E-value=0.016 Score=39.59 Aligned_cols=67 Identities=16% Similarity=0.260 Sum_probs=45.6
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCC--C----HHHHHhcCC-ccceeEEeccCCeEEEeccC
Q 030511 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT--N----PEWEKSYQY-EIPVLARVLSDGTEVLMACI 122 (176)
Q Consensus 50 ItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIde--D----~el~eky~~-~VPVL~i~~idGe~l~~~~f 122 (176)
++||+.++|+.|..+.-.|+.+ |++|+.+.++. . +++.+.... .||++. .+|..+ .
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~----------g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~---~~~~~l----~ 63 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLN----------KIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIV---DGDFTL----A 63 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHc----------CCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEE---ECCEEE----E
Confidence 4799999999999999999876 77777776652 2 233332223 699998 567554 2
Q ss_pred CHHHHHHHHHh
Q 030511 123 NRFRIEAWLSQ 133 (176)
Q Consensus 123 d~deL~~~L~~ 133 (176)
+...|..+|.+
T Consensus 64 eS~aI~~Yl~~ 74 (76)
T cd03050 64 ESVAILRYLAR 74 (76)
T ss_pred cHHHHHHHHHh
Confidence 55566666543
No 167
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=96.70 E-value=0.011 Score=40.74 Aligned_cols=63 Identities=17% Similarity=0.249 Sum_probs=45.9
Q ss_pred EEEEeCCC-------CCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcC-CccceeEEeccCCeEEEecc
Q 030511 50 LVLYSKPG-------CCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQ-YEIPVLARVLSDGTEVLMAC 121 (176)
Q Consensus 50 ItLYTkpg-------C~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~-~~VPVL~i~~idGe~l~~~~ 121 (176)
++||..++ |++|.+++..|+.. |++|+.++++.. +.-. -.||+|. .+|+.+
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~----------gi~~~~~~~~~~----~~~p~g~vPvl~---~~g~~l---- 60 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMA----------GIPYENKFGGLA----KRSPKGKLPFIE---LNGEKI---- 60 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHC----------CCCcEEeecCcc----cCCCCCCCCEEE---ECCEEE----
Confidence 58888884 69999999999876 888888877631 1122 3699998 677654
Q ss_pred CCHHHHHHHHHh
Q 030511 122 INRFRIEAWLSQ 133 (176)
Q Consensus 122 fd~deL~~~L~~ 133 (176)
.+...|.++|++
T Consensus 61 ~eS~~I~~yL~~ 72 (75)
T cd03080 61 ADSELIIDHLEE 72 (75)
T ss_pred cCHHHHHHHHHH
Confidence 366777777765
No 168
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=96.70 E-value=0.0042 Score=44.92 Aligned_cols=58 Identities=16% Similarity=0.291 Sum_probs=37.3
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCC----HHHHHhcCCc-cceeE
Q 030511 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN----PEWEKSYQYE-IPVLA 108 (176)
Q Consensus 46 ~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD----~el~eky~~~-VPVL~ 108 (176)
..+.+..|..+||+.|......|+++.. ....++.+..+ .+.+ .++.++++.. .|+++
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~----~~~~~~~vi~v-~~~~~~~~~~~~~~~~~~~~p~~~ 83 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIAR----AEADWLDVVLA-SDGEKAEHQRFLKKHGLEAFPYVL 83 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHH----HhcCCcEEEEE-eCCCHHHHHHHHHHhCCCCCcEEe
Confidence 4567888899999999999988887631 11124554433 2222 2466677773 77764
No 169
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=96.65 E-value=0.0068 Score=45.78 Aligned_cols=72 Identities=18% Similarity=0.260 Sum_probs=47.3
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCC-CCcceEEEEcCCCH-------------------------HHHH
Q 030511 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSL-HDVDLQVRDITTNP-------------------------EWEK 98 (176)
Q Consensus 45 ~~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~-~gie~eeIDIdeD~-------------------------el~e 98 (176)
....-+..|+.+||+.|......|.++.. .-... .++++..++++.++ .+.+
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~--~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 93 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYE--KLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEK 93 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHH--HHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHH
Confidence 34556788889999999998888876521 00111 25777777877643 2334
Q ss_pred hcCC-ccceeEEeccCCeEEE
Q 030511 99 SYQY-EIPVLARVLSDGTEVL 118 (176)
Q Consensus 99 ky~~-~VPVL~i~~idGe~l~ 118 (176)
.|+. .+|++++...+|+.+.
T Consensus 94 ~~~v~~iPt~~lid~~G~iv~ 114 (132)
T cd02964 94 QFKVEGIPTLVVLKPDGDVVT 114 (132)
T ss_pred HcCCCCCCEEEEECCCCCEEc
Confidence 5775 5899986555787653
No 170
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=96.59 E-value=0.019 Score=39.22 Aligned_cols=66 Identities=18% Similarity=0.367 Sum_probs=42.3
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCC------CHHHHHhcCC-ccceeEEeccC-CeEEEecc
Q 030511 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT------NPEWEKSYQY-EIPVLARVLSD-GTEVLMAC 121 (176)
Q Consensus 50 ItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIde------D~el~eky~~-~VPVL~i~~id-Ge~l~~~~ 121 (176)
++||+.++|+ |..++-.|... |++|+.++|+. .+++.+.... .||++. .+ |..+
T Consensus 1 ~~Ly~~~~~~-~~~v~~~l~~~----------~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~---~~~g~~l---- 62 (77)
T cd03057 1 MKLYYSPGAC-SLAPHIALEEL----------GLPFELVRVDLRTKTQKGADYLAINPKGQVPALV---LDDGEVL---- 62 (77)
T ss_pred CEEEeCCCCc-hHHHHHHHHHc----------CCCceEEEEecccCccCCHhHHHhCCCCCCCEEE---ECCCcEE----
Confidence 3789988874 77777777765 67777666552 2344443333 699998 44 6544
Q ss_pred CCHHHHHHHHHh
Q 030511 122 INRFRIEAWLSQ 133 (176)
Q Consensus 122 fd~deL~~~L~~ 133 (176)
++...|.++|.+
T Consensus 63 ~eS~aI~~yL~~ 74 (77)
T cd03057 63 TESAAILQYLAD 74 (77)
T ss_pred EcHHHHHHHHHH
Confidence 366667776654
No 171
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=96.59 E-value=0.015 Score=48.29 Aligned_cols=93 Identities=9% Similarity=0.030 Sum_probs=65.0
Q ss_pred ccccccccCCCCCCCCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcce------EEEEcCCCH----HHHH---
Q 030511 32 SPLAYSSSSSSSSSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDL------QVRDITTNP----EWEK--- 98 (176)
Q Consensus 32 ~~~~~~~~~~~~~~~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~------eeIDIdeD~----el~e--- 98 (176)
--++|.+.+++.-...+.|+-|...||+.|+.-...|+++. ..++++ ..||.+++. .+.+
T Consensus 45 ~~~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~-------~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fi 117 (184)
T TIGR01626 45 KDTVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIK-------AAKFPPVKYQTTTIINADDAIVGTGMFVKSSA 117 (184)
T ss_pred CcccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHHH-------HcCCCcccccceEEEECccchhhHHHHHHHHH
Confidence 45677777788888888999999999999999999999984 237888 888887643 2211
Q ss_pred ----------------------hcCC-cccee-EEeccCCeEEEe--ccCCHHHHHHHH
Q 030511 99 ----------------------SYQY-EIPVL-ARVLSDGTEVLM--ACINRFRIEAWL 131 (176)
Q Consensus 99 ----------------------ky~~-~VPVL-~i~~idGe~l~~--~~fd~deL~~~L 131 (176)
.|+. .+|.. ++...+|+.... |..+.+++.+++
T Consensus 118 e~~~~~~P~~~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 118 KKGKKENPWSQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred HHhcccCCcceEEECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 2332 35555 455567765433 677777776643
No 172
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=96.58 E-value=0.018 Score=39.53 Aligned_cols=66 Identities=14% Similarity=0.162 Sum_probs=46.0
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCC--HHHHHhcC-C-ccceeEEeccCCeEEEeccCCHH
Q 030511 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN--PEWEKSYQ-Y-EIPVLARVLSDGTEVLMACINRF 125 (176)
Q Consensus 50 ItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD--~el~eky~-~-~VPVL~i~~idGe~l~~~~fd~d 125 (176)
++||..+.|+.|..+.-.|... |++|+.+.++-+ .+...+.+ . .||+|. .||..+ .+..
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~----------~i~~e~~~v~~~~~~~~~~~~~p~~~vP~l~---~~~~~l----~es~ 64 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQ----------GISWEEERVTYEEWQESLKPKMLFGQLPCFK---DGDLTL----VQSN 64 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHc----------CCCCEEEEecHHHhhhhhhccCCCCCCCEEE---ECCEEE----EcHH
Confidence 5899999999999999999876 788888887632 12222333 2 599998 567654 2556
Q ss_pred HHHHHHH
Q 030511 126 RIEAWLS 132 (176)
Q Consensus 126 eL~~~L~ 132 (176)
.|..+|.
T Consensus 65 aI~~yL~ 71 (73)
T cd03076 65 AILRHLG 71 (73)
T ss_pred HHHHHHh
Confidence 6666654
No 173
>PRK15113 glutathione S-transferase; Provisional
Probab=96.57 E-value=0.021 Score=46.34 Aligned_cols=70 Identities=19% Similarity=0.319 Sum_probs=48.8
Q ss_pred CceEEEEeCC--CCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCC--C----HHHHHhcC-C-ccceeEEeccCCeE
Q 030511 47 TRKLVLYSKP--GCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT--N----PEWEKSYQ-Y-EIPVLARVLSDGTE 116 (176)
Q Consensus 47 ~~kItLYTkp--gC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIde--D----~el~eky~-~-~VPVL~i~~idGe~ 116 (176)
.+.++||+.+ .|++|..+.-.|+.. |++|+.+.|+- . +++. +.+ . .||||. .||..
T Consensus 3 ~~~~~Ly~~~~~~s~~~~rv~~~l~e~----------gi~~e~~~v~~~~~~~~~~~~~-~~nP~g~VP~L~---~~~~~ 68 (214)
T PRK15113 3 KPAITLYSDAHFFSPYVMSAFVALQEK----------GLPFELKTVDLDAGEHLQPTYQ-GYSLTRRVPTLQ---HDDFE 68 (214)
T ss_pred CCeEEEEeCCCCCCchHHHHHHHHHHc----------CCCCeEEEeCCCCccccCHHHH-hcCCCCCCCEEE---ECCEE
Confidence 3458999976 699999999999876 78887777762 2 2333 333 2 699998 67765
Q ss_pred EEeccCCHHHHHHHHHhC
Q 030511 117 VLMACINRFRIEAWLSQM 134 (176)
Q Consensus 117 l~~~~fd~deL~~~L~~~ 134 (176)
++ +...|..+|.+.
T Consensus 69 l~----ES~aI~~YL~~~ 82 (214)
T PRK15113 69 LS----ESSAIAEYLEER 82 (214)
T ss_pred Ee----cHHHHHHHHHHH
Confidence 43 566676766544
No 174
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.54 E-value=0.016 Score=44.46 Aligned_cols=86 Identities=21% Similarity=0.256 Sum_probs=62.3
Q ss_pred CCceEEEEeCCC-CCchH------HHHHHHHHHhccCCCCCCCCcceEEEEcCCCH------HHHHhcC---CccceeEE
Q 030511 46 STRKLVLYSKPG-CCLCD------GLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP------EWEKSYQ---YEIPVLAR 109 (176)
Q Consensus 46 ~~~kItLYTkpg-C~lCe------~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~------el~eky~---~~VPVL~i 109 (176)
...++++|+.+. |-.|- +..++|+.... --...++|.|+.|||..++ ++.++-- +.-|+++
T Consensus 3 ~~~~l~VyGae~iCASCV~aPtsKdt~eWLeaalk--RKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPliv- 79 (106)
T COG4837 3 NEAKLVVYGAEVICASCVNAPTSKDTYEWLEAALK--RKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPLIV- 79 (106)
T ss_pred ceeEEEEecchhhhHHhcCCCcchhHHHHHHHHHh--ccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcccccceEEE-
Confidence 345789999776 88884 45566666431 1134568999999997432 3445442 4579999
Q ss_pred eccCCeEEEeccCCHHHHHHHHHhCCc
Q 030511 110 VLSDGTEVLMACINRFRIEAWLSQMSL 136 (176)
Q Consensus 110 ~~idGe~l~~~~fd~deL~~~L~~~~l 136 (176)
++|+.+.-|.+.-.+|.+.+.++|.
T Consensus 80 --vedeiVaeGnprlKdiy~~m~d~~y 104 (106)
T COG4837 80 --VEDEIVAEGNPRLKDIYRVMDDKGY 104 (106)
T ss_pred --EcceEeecCCchHHHHHHHHHHhcc
Confidence 8999999999999999999988764
No 175
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=96.52 E-value=0.0048 Score=41.43 Aligned_cols=63 Identities=25% Similarity=0.400 Sum_probs=45.6
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCC-CcceEEEEcC-CCHHHHHhcC---CccceeEEeccCCeE
Q 030511 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLH-DVDLQVRDIT-TNPEWEKSYQ---YEIPVLARVLSDGTE 116 (176)
Q Consensus 48 ~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~-gie~eeIDId-eD~el~eky~---~~VPVL~i~~idGe~ 116 (176)
+.+..|.++||+.|......|..... ... .+.+..+|+. .+++....|+ ..+|.+.. +.||+.
T Consensus 34 ~~~v~f~~~~C~~C~~~~~~l~~~~~-----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~ 101 (127)
T COG0526 34 PVLVDFWAPWCPPCRAEAPLLEELAE-----EYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLL-FKDGKE 101 (127)
T ss_pred eEEEEEEcCcCHHHHhhchhHHHHHH-----HhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEE-EeCcch
Confidence 33444469999999999999988741 122 5789999997 7888888887 46887762 245543
No 176
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=96.51 E-value=0.035 Score=38.34 Aligned_cols=66 Identities=17% Similarity=0.219 Sum_probs=44.5
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcC--CC----HHHHHhcC-CccceeEEeccC---CeEEEe
Q 030511 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--TN----PEWEKSYQ-YEIPVLARVLSD---GTEVLM 119 (176)
Q Consensus 50 ItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDId--eD----~el~eky~-~~VPVL~i~~id---Ge~l~~ 119 (176)
++||+.++ +.|..++-.|+.. |++|+.+.++ .. +++.+... ..||+|. .+ |..+
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~----------gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~---~~~~~g~~l-- 65 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEEL----------GLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIV---DHNGTPLTV-- 65 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHc----------CCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEE---eCCCCceEE--
Confidence 68999987 9999999999886 6776666555 21 23333222 3699997 44 5544
Q ss_pred ccCCHHHHHHHHHh
Q 030511 120 ACINRFRIEAWLSQ 133 (176)
Q Consensus 120 ~~fd~deL~~~L~~ 133 (176)
.+...|..+|.+
T Consensus 66 --~eS~aI~~yL~~ 77 (81)
T cd03048 66 --FESGAILLYLAE 77 (81)
T ss_pred --EcHHHHHHHHHH
Confidence 356667777654
No 177
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.005 Score=58.18 Aligned_cols=88 Identities=22% Similarity=0.258 Sum_probs=68.7
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhccCCCCCC--CCcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCe--EEEeccCC
Q 030511 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSL--HDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGT--EVLMACIN 123 (176)
Q Consensus 49 kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~--~gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe--~l~~~~fd 123 (176)
-++-|..|||+.|..+....++... .... -++.+-.||-+++.++..+|+. +.|+|.+ +.||+ ...-|+-+
T Consensus 45 vlVeFYAPWCghck~LaPey~kAA~---~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPTlki-FrnG~~~~~Y~G~r~ 120 (493)
T KOG0190|consen 45 VLVEFYAPWCGHCKALAPEYEKAAT---ELKEEGSPVKLAKVDATEESDLASKYEVRGYPTLKI-FRNGRSAQDYNGPRE 120 (493)
T ss_pred EEEEEEchhhhhhhhhCcHHHHHHH---HhhccCCCceeEEeecchhhhhHhhhcCCCCCeEEE-EecCCcceeccCccc
Confidence 4677889999999998888776531 1122 2788999999999999999997 6999984 58887 34448899
Q ss_pred HHHHHHHHHhCCchhHH
Q 030511 124 RFRIEAWLSQMSLDCVM 140 (176)
Q Consensus 124 ~deL~~~L~~~~l~~~~ 140 (176)
.+.|..||.+...+...
T Consensus 121 adgIv~wl~kq~gPa~~ 137 (493)
T KOG0190|consen 121 ADGIVKWLKKQSGPASK 137 (493)
T ss_pred HHHHHHHHHhccCCCce
Confidence 99999999987665443
No 178
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=96.44 E-value=0.013 Score=41.26 Aligned_cols=46 Identities=17% Similarity=0.260 Sum_probs=32.6
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHH
Q 030511 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPE 95 (176)
Q Consensus 48 ~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~e 95 (176)
+.+..|+.+||+.|.+..+.|.++.. .-....++++.-|.+|++.+
T Consensus 3 ~~ll~fwa~~c~~c~~~~~~l~~l~~--~~~~~~~v~~v~Vs~d~~~~ 48 (95)
T PF13905_consen 3 PVLLYFWASWCPPCKKELPKLKELYK--KYKKKDDVEFVFVSLDEDEE 48 (95)
T ss_dssp EEEEEEE-TTSHHHHHHHHHHHHHHH--HHTTTTTEEEEEEE-SSSHH
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHH--HhCCCCCEEEEEEEeCCCHH
Confidence 56889999999999999999988641 00113478888999987743
No 179
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=96.42 E-value=0.014 Score=47.72 Aligned_cols=68 Identities=15% Similarity=0.332 Sum_probs=49.7
Q ss_pred EEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCH--HHHHhc-CCccceeEEeccCCeEEEeccCCHHHH
Q 030511 51 VLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP--EWEKSY-QYEIPVLARVLSDGTEVLMACINRFRI 127 (176)
Q Consensus 51 tLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~--el~eky-~~~VPVL~i~~idGe~l~~~~fd~deL 127 (176)
+||+.+.||+|.+++-.|+.+ |++|+.++++.++ ...+.. .-.||+|.. .||..+ .+...|
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~----------gl~~e~~~~~~~~~~~~~~~np~g~vP~l~~--~~g~~l----~es~~I 64 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLK----------NIPVEKHVLLNDDEETPIRMIGAKQVPILQK--DDGRAM----PESLDI 64 (209)
T ss_pred CeecCCCCChHHHHHHHHHHc----------CCCeEEEECCCCcchhHHHhcCCCCcceEEe--eCCeEe----ccHHHH
Confidence 589999999999999999886 8999999887442 222222 246999962 355544 377888
Q ss_pred HHHHHhC
Q 030511 128 EAWLSQM 134 (176)
Q Consensus 128 ~~~L~~~ 134 (176)
.++|.+.
T Consensus 65 ~~yL~~~ 71 (209)
T TIGR02182 65 VAYFDKL 71 (209)
T ss_pred HHHHHHh
Confidence 8888764
No 180
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=96.41 E-value=0.012 Score=41.14 Aligned_cols=61 Identities=15% Similarity=0.215 Sum_probs=41.3
Q ss_pred CCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcC--CCHHHHH--hcC--CccceeEEeccC-CeEEEeccCCHHHHH
Q 030511 56 PGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--TNPEWEK--SYQ--YEIPVLARVLSD-GTEVLMACINRFRIE 128 (176)
Q Consensus 56 pgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDId--eD~el~e--ky~--~~VPVL~i~~id-Ge~l~~~~fd~deL~ 128 (176)
++|++|.+++-.|... +++|+.+.++ +.+.... +.. ..||+|. .+ |..+ ++...|.
T Consensus 14 ~~Sp~~~kv~~~L~~~----------~i~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~---~~~~~~l----~eS~aI~ 76 (84)
T cd03038 14 AFSPNVWKTRLALNHK----------GLEYKTVPVEFPDIPPILGELTSGGFYTVPVIV---DGSGEVI----GDSFAIA 76 (84)
T ss_pred CcCChhHHHHHHHHhC----------CCCCeEEEecCCCcccccccccCCCCceeCeEE---ECCCCEE----eCHHHHH
Confidence 6789999999999876 7777776665 2222222 222 3699997 45 6554 4777888
Q ss_pred HHHHh
Q 030511 129 AWLSQ 133 (176)
Q Consensus 129 ~~L~~ 133 (176)
++|.+
T Consensus 77 ~yL~~ 81 (84)
T cd03038 77 EYLEE 81 (84)
T ss_pred HHHHH
Confidence 88765
No 181
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=96.35 E-value=0.037 Score=44.96 Aligned_cols=76 Identities=16% Similarity=0.299 Sum_probs=61.8
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-----ccceeEEeccCCeEEEec
Q 030511 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-----EIPVLARVLSDGTEVLMA 120 (176)
Q Consensus 46 ~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~-----~VPVL~i~~idGe~l~~~ 120 (176)
...++++|-.|+|+-|+.=-+.|+.. ||++..+..++-..+.++|+. +-=+.+ +||..+ -|
T Consensus 24 ~~~~~~vyksPnCGCC~~w~~~mk~~----------Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~V---I~Gy~v-EG 89 (149)
T COG3019 24 QATEMVVYKSPNCGCCDEWAQHMKAN----------GFEVKVVETDDFLALKRRLGIPYEMQSCHTAV---INGYYV-EG 89 (149)
T ss_pred ceeeEEEEeCCCCccHHHHHHHHHhC----------CcEEEEeecCcHHHHHHhcCCChhhccccEEE---EcCEEE-ec
Confidence 55679999999999999999999865 888888877766778888874 345566 799875 47
Q ss_pred cCCHHHHHHHHHhCC
Q 030511 121 CINRFRIEAWLSQMS 135 (176)
Q Consensus 121 ~fd~deL~~~L~~~~ 135 (176)
....+.|.++|+..-
T Consensus 90 HVPa~aI~~ll~~~p 104 (149)
T COG3019 90 HVPAEAIARLLAEKP 104 (149)
T ss_pred cCCHHHHHHHHhCCC
Confidence 889999999998776
No 182
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=96.33 E-value=0.0093 Score=41.82 Aligned_cols=59 Identities=14% Similarity=0.091 Sum_probs=39.1
Q ss_pred CceEEEEeCCCCCchHHHHHHHHH---HhccCCCCCCCCcceEEEEcCCCHHHHHhcCCccceeEE
Q 030511 47 TRKLVLYSKPGCCLCDGLKEKLQA---AFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLAR 109 (176)
Q Consensus 47 ~~kItLYTkpgC~lCe~aKe~Le~---l~~~~~~~~~~gie~eeIDIdeD~el~eky~~~VPVL~i 109 (176)
.+-++.|+++||+.|...++.+-. +.. .-..++.+..+|++++....+.++..+|.+++
T Consensus 18 kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~----~~~~~fv~v~vd~~~~~~~~~~~~~~~P~~~~ 79 (82)
T PF13899_consen 18 KPVLVDFGADWCPPCKKLEREVFSDPEVQE----ALNKNFVLVKVDVDDEDPNAQFDRQGYPTFFF 79 (82)
T ss_dssp SEEEEEEETTTTHHHHHHHHHTTTSHHHHH----HHHHCSEEEEEETTTHHHHHHHHHCSSSEEEE
T ss_pred CCEEEEEECCCCHhHHHHHHHHcCCHHHHH----HHHCCEEEEEEEcCCCChhHHhCCccCCEEEE
Confidence 445788899999999999988622 110 00137888889998665433333344999873
No 183
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=96.32 E-value=0.016 Score=52.26 Aligned_cols=65 Identities=25% Similarity=0.511 Sum_probs=49.5
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCC----ccceeEEeccCCeEEEeccCC
Q 030511 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY----EIPVLARVLSDGTEVLMACIN 123 (176)
Q Consensus 48 ~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~----~VPVL~i~~idGe~l~~~~fd 123 (176)
-+|+||--..||+|-+++++|+- |+|+|++|.| ||-.+++..+ .||.|. ++|++. .|
T Consensus 89 L~l~LyQyetCPFCcKVrAFLDy----------hgisY~VVEV--npV~r~eIk~SsykKVPil~---~~Geqm----~d 149 (370)
T KOG3029|consen 89 LDLVLYQYETCPFCCKVRAFLDY----------HGISYAVVEV--NPVLRQEIKWSSYKKVPILL---IRGEQM----VD 149 (370)
T ss_pred ceEEEEeeccCchHHHHHHHHhh----------cCCceEEEEe--cchhhhhccccccccccEEE---ecccee----ch
Confidence 58999999999999999999975 4999999998 5655555432 499999 778863 24
Q ss_pred HHHHHHHH
Q 030511 124 RFRIEAWL 131 (176)
Q Consensus 124 ~deL~~~L 131 (176)
..-|...|
T Consensus 150 SsvIIs~l 157 (370)
T KOG3029|consen 150 SSVIISLL 157 (370)
T ss_pred hHHHHHHH
Confidence 44454444
No 184
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.23 E-value=0.028 Score=57.14 Aligned_cols=87 Identities=9% Similarity=0.013 Sum_probs=55.3
Q ss_pred CCCCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEE---cC------------------------CCHHH
Q 030511 44 SSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRD---IT------------------------TNPEW 96 (176)
Q Consensus 44 ~~~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeID---Id------------------------eD~el 96 (176)
....+.|.-|+.+||+.|......|+++.. .....++.+.-|. +| .+.++
T Consensus 418 lkGK~vll~FWAsWC~pC~~e~P~L~~l~~---~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~ 494 (1057)
T PLN02919 418 LKGKVVILDFWTYCCINCMHVLPDLEFLEK---KYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYL 494 (1057)
T ss_pred cCCCEEEEEEECCcChhHHhHhHHHHHHHH---HcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHH
Confidence 345667899999999999999999988741 1122233333231 12 12234
Q ss_pred HHhcCC-ccceeEEeccCCeEEEe--ccCCHHHHHHHHHh
Q 030511 97 EKSYQY-EIPVLARVLSDGTEVLM--ACINRFRIEAWLSQ 133 (176)
Q Consensus 97 ~eky~~-~VPVL~i~~idGe~l~~--~~fd~deL~~~L~~ 133 (176)
..+|+. .+|..++...+|+.+.. |...+++|.+++++
T Consensus 495 ~~~~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~ 534 (1057)
T PLN02919 495 WRELGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEA 534 (1057)
T ss_pred HHhcCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHH
Confidence 456665 58988865567886544 55677787777654
No 185
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=96.22 E-value=0.047 Score=36.73 Aligned_cols=65 Identities=17% Similarity=0.213 Sum_probs=43.8
Q ss_pred EEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCC------HHHHHhcCC-ccceeEEeccCCeEEEeccCC
Q 030511 51 VLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN------PEWEKSYQY-EIPVLARVLSDGTEVLMACIN 123 (176)
Q Consensus 51 tLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD------~el~eky~~-~VPVL~i~~idGe~l~~~~fd 123 (176)
+||+.+. +.|..++-.|+.. |++|+.+.++-. +++.+.... .||++. .||..+ ++
T Consensus 2 ~l~~~~~-~~~~~v~~~l~~~----------~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~---~~g~~l----~e 63 (76)
T cd03046 2 TLYHLPR-SRSFRILWLLEEL----------GLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLV---DGDLVL----TE 63 (76)
T ss_pred EEEeCCC-CChHHHHHHHHHc----------CCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEE---ECCEEE----Ec
Confidence 6888776 6788888888765 777777766521 334443333 699997 677654 36
Q ss_pred HHHHHHHHHh
Q 030511 124 RFRIEAWLSQ 133 (176)
Q Consensus 124 ~deL~~~L~~ 133 (176)
...|.++|.+
T Consensus 64 s~aI~~yL~~ 73 (76)
T cd03046 64 SAAIILYLAE 73 (76)
T ss_pred HHHHHHHHHH
Confidence 6777777764
No 186
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=96.11 E-value=0.027 Score=47.52 Aligned_cols=77 Identities=19% Similarity=0.343 Sum_probs=47.1
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcC-------CC----HHH-------HHhcCCc---cceeE
Q 030511 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT-------TN----PEW-------EKSYQYE---IPVLA 108 (176)
Q Consensus 50 ItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDId-------eD----~el-------~eky~~~---VPVL~ 108 (176)
|+|||..||..|--|.++|.++.. + .++--=-..|| +| +++ .+.++.+ .|.++
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~-----~-~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~v 75 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAA-----R-PDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVV 75 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHH-----H-TSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEE
T ss_pred eeEecCCCCCCCcHHHHHHHHhhc-----C-CCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEE
Confidence 799999999999999999999852 1 23322223343 22 332 2233432 59999
Q ss_pred EeccCCeEEEeccCCHHHHHHHHHhCCc
Q 030511 109 RVLSDGTEVLMACINRFRIEAWLSQMSL 136 (176)
Q Consensus 109 i~~idGe~l~~~~fd~deL~~~L~~~~l 136 (176)
+||+.. ..+++.+++..++.+..-
T Consensus 76 ---VnG~~~-~~g~~~~~~~~ai~~~~~ 99 (202)
T PF06764_consen 76 ---VNGREH-RVGSDRAAVEAAIQAARA 99 (202)
T ss_dssp ---ETTTEE-EETT-HHHHHHHHHHHHH
T ss_pred ---ECCeee-eeccCHHHHHHHHHHhhc
Confidence 899875 458999999988876543
No 187
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=96.11 E-value=0.013 Score=47.41 Aligned_cols=25 Identities=24% Similarity=0.703 Sum_probs=22.6
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHH
Q 030511 46 STRKLVLYSKPGCCLCDGLKEKLQA 70 (176)
Q Consensus 46 ~~~kItLYTkpgC~lCe~aKe~Le~ 70 (176)
....|++|+.+.||+|..+.+.+.+
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhh
Confidence 6678999999999999999999874
No 188
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=96.06 E-value=0.0053 Score=47.84 Aligned_cols=51 Identities=24% Similarity=0.473 Sum_probs=32.2
Q ss_pred CCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHH-------HH--hcCC-ccceeEE
Q 030511 55 KPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEW-------EK--SYQY-EIPVLAR 109 (176)
Q Consensus 55 kpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el-------~e--ky~~-~VPVL~i 109 (176)
++|||.|..++..+++... ....+..+..+.|.+.++| +. +++. .||+|+.
T Consensus 35 ~sWCPDC~~aep~v~~~f~----~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~ 95 (119)
T PF06110_consen 35 QSWCPDCVAAEPVVEKAFK----KAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIR 95 (119)
T ss_dssp -BSSHHHHHHHHHHHHHHH----H-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEE
T ss_pred CcccHHHHHHHHHHHHHHH----hCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEE
Confidence 5799999999999988652 1122677888888754444 33 3555 6999984
No 189
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=96.01 E-value=0.066 Score=40.52 Aligned_cols=77 Identities=18% Similarity=0.177 Sum_probs=45.7
Q ss_pred EEEeCCC-CCchH------HHHHHHHHHhccCCCCCCCCcceEEEEcCCCH------HHHHhcCC---ccceeEEeccCC
Q 030511 51 VLYSKPG-CCLCD------GLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP------EWEKSYQY---EIPVLARVLSDG 114 (176)
Q Consensus 51 tLYTkpg-C~lCe------~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~------el~eky~~---~VPVL~i~~idG 114 (176)
++|+..- |.-|- +.-++|+.... --....+|.++.|||.+.+ ++.++... --|+++ +||
T Consensus 1 ~VYGAe~~CASCVn~PsSkeTyeWL~aal~--RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~---i~~ 75 (93)
T PF07315_consen 1 VVYGAEVICASCVNAPSSKETYEWLEAALK--RKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVV---IND 75 (93)
T ss_dssp EEEE-SS--GGGSSS--HHHHHHHHHHHHH--HH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEE---ETT
T ss_pred CcccccccchhhcCCCCchhHHHHHHHHHh--CcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEE---ECC
Confidence 4788665 98884 33444443210 0034558999999998543 34444432 259999 899
Q ss_pred eEEEeccCCHHHHHHHHH
Q 030511 115 TEVLMACINRFRIEAWLS 132 (176)
Q Consensus 115 e~l~~~~fd~deL~~~L~ 132 (176)
+.+.-|.+.-.+|.+.++
T Consensus 76 eiV~EGnp~LK~I~~~~e 93 (93)
T PF07315_consen 76 EIVAEGNPQLKDIYEEME 93 (93)
T ss_dssp EEEEESS--HHHHHHHHH
T ss_pred EEEecCCccHHHHHHhhC
Confidence 999999888888887763
No 190
>PTZ00056 glutathione peroxidase; Provisional
Probab=95.98 E-value=0.058 Score=44.48 Aligned_cols=61 Identities=7% Similarity=0.103 Sum_probs=40.4
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcC-------CCH----HHHHhcCCccceeE
Q 030511 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT-------TNP----EWEKSYQYEIPVLA 108 (176)
Q Consensus 45 ~~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDId-------eD~----el~eky~~~VPVL~ 108 (176)
...+-|..|+.+||+.|..-...|.++.. .....|+.+.-|+++ +++ ++.++++...|++.
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~---~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~ 109 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHS---VFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFE 109 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHH---HHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeee
Confidence 45567888999999999976677766531 122346777777653 233 35667777778764
No 191
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.028 Score=49.71 Aligned_cols=78 Identities=9% Similarity=0.137 Sum_probs=61.7
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCCc-cceeEEeccCCeEEEe-ccCCHH
Q 030511 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYE-IPVLARVLSDGTEVLM-ACINRF 125 (176)
Q Consensus 48 ~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~~-VPVL~i~~idGe~l~~-~~fd~d 125 (176)
--++-||..||+.|...-..++.+. .++.+.-|-+||||+-......+|.. .|+-+ .+.+|..+.. -+-|+.
T Consensus 23 ~v~Vdfta~wCGPCk~IaP~Fs~la-----nkYp~aVFlkVdVd~c~~taa~~gV~amPTFi-ff~ng~kid~~qGAd~~ 96 (288)
T KOG0908|consen 23 LVVVDFTASWCGPCKRIAPIFSDLA-----NKYPGAVFLKVDVDECRGTAATNGVNAMPTFI-FFRNGVKIDQIQGADAS 96 (288)
T ss_pred EEEEEEEecccchHHhhhhHHHHhh-----hhCcccEEEEEeHHHhhchhhhcCcccCceEE-EEecCeEeeeecCCCHH
Confidence 3578899999999999999999874 56778899999999988889999985 78765 4678875443 456666
Q ss_pred HHHHHH
Q 030511 126 RIEAWL 131 (176)
Q Consensus 126 eL~~~L 131 (176)
-|++-+
T Consensus 97 gLe~kv 102 (288)
T KOG0908|consen 97 GLEEKV 102 (288)
T ss_pred HHHHHH
Confidence 666554
No 192
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.024 Score=48.99 Aligned_cols=73 Identities=19% Similarity=0.298 Sum_probs=55.6
Q ss_pred ceEEEEe-----CCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHh---cC--CccceeEEeccCCeEE
Q 030511 48 RKLVLYS-----KPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKS---YQ--YEIPVLARVLSDGTEV 117 (176)
Q Consensus 48 ~kItLYT-----kpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~ek---y~--~~VPVL~i~~idGe~l 117 (176)
..+.+|= .|.|++-+.+..+|+.. +++|..+||-+|+++++- |. -.+|.|+ ++|+.+
T Consensus 139 ~~v~lFmKG~p~~P~CGFS~~~v~iL~~~----------nV~~~~fdIL~DeelRqglK~fSdWPTfPQly---I~GEFi 205 (227)
T KOG0911|consen 139 KPVMLFMKGTPEEPKCGFSRQLVGILQSH----------NVNYTIFDVLTDEELRQGLKEFSDWPTFPQLY---VKGEFI 205 (227)
T ss_pred CeEEEEecCCCCcccccccHHHHHHHHHc----------CCCeeEEeccCCHHHHHHhhhhcCCCCcccee---ECCEec
Confidence 3578885 46799999999999886 889999999999998864 43 3699999 899986
Q ss_pred EeccCCHHHHHHHHHhCCch
Q 030511 118 LMACINRFRIEAWLSQMSLD 137 (176)
Q Consensus 118 ~~~~fd~deL~~~L~~~~l~ 137 (176)
+ +.|=|.+.+.+.-|.
T Consensus 206 G----GlDIl~~m~~~geL~ 221 (227)
T KOG0911|consen 206 G----GLDILKEMHEKGELV 221 (227)
T ss_pred c----CcHHHHHHhhcccHH
Confidence 4 345555555555443
No 193
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=95.86 E-value=0.09 Score=35.63 Aligned_cols=55 Identities=15% Similarity=0.190 Sum_probs=39.4
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCC--C----HHHHHhcCC-ccceeEEeccCCeEE
Q 030511 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT--N----PEWEKSYQY-EIPVLARVLSDGTEV 117 (176)
Q Consensus 50 ItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIde--D----~el~eky~~-~VPVL~i~~idGe~l 117 (176)
++||+.++.+.|..+.-.|+.. |++|+.++++. . +++.+.... .||+|. .+|..+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~----------~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~---~~~~~l 62 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDEL----------GLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLE---DGDFVL 62 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHc----------CCCCEEEEeccccccccCHHHHhhCCCCCCCEEE---ECCEEE
Confidence 3799999999999999999886 77777766652 1 334443333 699998 566554
No 194
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=95.79 E-value=0.093 Score=41.15 Aligned_cols=45 Identities=9% Similarity=0.153 Sum_probs=30.8
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCC
Q 030511 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT 92 (176)
Q Consensus 45 ~~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIde 92 (176)
.....|..|..+||+.|......|.++.. .....++.+.-|.++.
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~---~~~~~~v~~v~is~d~ 68 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAK---EYGAKGVAVVAINSND 68 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHH---HHhhCCeEEEEEecCc
Confidence 34567888889999999887777776531 1222367777777763
No 195
>PLN02473 glutathione S-transferase
Probab=95.75 E-value=0.08 Score=42.50 Aligned_cols=69 Identities=9% Similarity=0.200 Sum_probs=48.3
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCC------CHHHHHhcCC-ccceeEEeccCCeEEEecc
Q 030511 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT------NPEWEKSYQY-EIPVLARVLSDGTEVLMAC 121 (176)
Q Consensus 49 kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIde------D~el~eky~~-~VPVL~i~~idGe~l~~~~ 121 (176)
.++||+.+.|+.|.++.-.|+.+ |++|+.+.++. .+++.+..-. .||+|. .||..+.
T Consensus 2 ~~kLy~~~~s~~~~rv~~~L~e~----------gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~---~~g~~l~--- 65 (214)
T PLN02473 2 VVKVYGQIKAANPQRVLLCFLEK----------GIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIE---DGDLKLF--- 65 (214)
T ss_pred ceEEecCCCCCchHHHHHHHHHc----------CCCceEEEecCcccccCCHHHHhhCCCCCCCeEE---ECCEEEE---
Confidence 57999999999999999999876 77777765542 3455544323 699998 5775543
Q ss_pred CCHHHHHHHHHhC
Q 030511 122 INRFRIEAWLSQM 134 (176)
Q Consensus 122 fd~deL~~~L~~~ 134 (176)
....|..+|.+.
T Consensus 66 -ES~aI~~YL~~~ 77 (214)
T PLN02473 66 -ESRAIARYYATK 77 (214)
T ss_pred -ehHHHHHHHHHH
Confidence 555666666533
No 196
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=95.69 E-value=0.012 Score=43.94 Aligned_cols=46 Identities=20% Similarity=0.359 Sum_probs=32.9
Q ss_pred EeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCH-------HHHHhcCCccceeE
Q 030511 53 YSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP-------EWEKSYQYEIPVLA 108 (176)
Q Consensus 53 YTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~-------el~eky~~~VPVL~ 108 (176)
|+.|.|.-|..|+++|++. |++|+.+|+.+++ +|.+..+.++--|+
T Consensus 1 Y~~~~C~t~rka~~~L~~~----------gi~~~~~d~~k~p~s~~el~~~l~~~~~~~~~li 53 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEEN----------GIEYEFIDYKKEPLSREELRELLSKLGNGPDDLI 53 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHT----------T--EEEEETTTS---HHHHHHHHHHHTSSGGGGB
T ss_pred CcCCCCHHHHHHHHHHHHc----------CCCeEeehhhhCCCCHHHHHHHHHHhcccHHHHh
Confidence 8899999999999999986 9999999998764 35556665555554
No 197
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=95.66 E-value=0.11 Score=36.31 Aligned_cols=66 Identities=21% Similarity=0.270 Sum_probs=45.9
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhc------CCccceeEEeccCCeEEEeccCC
Q 030511 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSY------QYEIPVLARVLSDGTEVLMACIN 123 (176)
Q Consensus 50 ItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky------~~~VPVL~i~~idGe~l~~~~fd 123 (176)
.++|..++.+.|..+.-.|+.. |++|+.+.++..+++.+.- .-.||+|. .||..+. .
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~----------gi~~e~~~v~~~~~~~~~~~~~~~~~g~vP~L~---~~g~~l~----E 64 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAA----------GVEFEEKFIESAEDLEKLKKDGSLMFQQVPMVE---IDGMKLV----Q 64 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHc----------CCCcEEEEeccHHHHHhhccccCCCCCCCCEEE---ECCEEEe----e
Confidence 5799999999999999988876 7888877776544443211 12699998 6776543 4
Q ss_pred HHHHHHHHH
Q 030511 124 RFRIEAWLS 132 (176)
Q Consensus 124 ~deL~~~L~ 132 (176)
...|..+|.
T Consensus 65 S~AI~~YL~ 73 (79)
T cd03077 65 TRAILNYIA 73 (79)
T ss_pred HHHHHHHHH
Confidence 555666664
No 198
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.049 Score=47.35 Aligned_cols=76 Identities=21% Similarity=0.208 Sum_probs=60.1
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHH-HHHhcCCccceeEEeccCCeEEEeccCCHH
Q 030511 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPE-WEKSYQYEIPVLARVLSDGTEVLMACINRF 125 (176)
Q Consensus 47 ~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~e-l~eky~~~VPVL~i~~idGe~l~~~~fd~d 125 (176)
.+.|.+|+--.|--|-.+-+.|++...++ ..+.+|-...+. ..++|-.+||-++ .||+.+.-.+.|++
T Consensus 10 ~~~VkI~~HktC~ssy~Lf~~L~nkgll~--------~Vkii~a~~p~f~~~~~~V~SvP~Vf---~DGel~~~dpVdp~ 78 (265)
T COG5494 10 EMEVKIFTHKTCVSSYMLFEYLENKGLLG--------KVKIIDAELPPFLAFEKGVISVPSVF---IDGELVYADPVDPE 78 (265)
T ss_pred heEEEEEEecchHHHHHHHHHHHhcCCCC--------CceEEEcCCChHHHhhcceeecceEE---EcCeEEEcCCCCHH
Confidence 46799999999999999999998862111 244556555554 4455778999999 89998888999999
Q ss_pred HHHHHHHh
Q 030511 126 RIEAWLSQ 133 (176)
Q Consensus 126 eL~~~L~~ 133 (176)
+|+.+++.
T Consensus 79 ~ies~~~G 86 (265)
T COG5494 79 EIESILSG 86 (265)
T ss_pred HHHHHHcC
Confidence 99999987
No 199
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=95.44 E-value=0.035 Score=41.98 Aligned_cols=51 Identities=16% Similarity=0.053 Sum_probs=35.6
Q ss_pred CCCCCCceEEEEeCC-CCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHH
Q 030511 42 SSSSSTRKLVLYSKP-GCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPE 95 (176)
Q Consensus 42 ~~~~~~~kItLYTkp-gC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~e 95 (176)
+.....+.|..|... ||+.|......|+++... ....++.+..+.++.++.
T Consensus 24 ~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~---~~~~~v~~v~v~~~~~~~ 75 (146)
T PF08534_consen 24 SDFKGKPVVVNFWASAWCPPCRKELPYLNELQEK---YKDKGVDVVGVSSDDDPP 75 (146)
T ss_dssp GGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHH---HHTTTCEEEEEEESSSHH
T ss_pred HHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhh---hccCceEEEEecccCCHH
Confidence 334455567777777 999999999888776310 123478888888887753
No 200
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.074 Score=44.33 Aligned_cols=86 Identities=16% Similarity=0.268 Sum_probs=56.0
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCC----------------HHHHHhcCC-cccee
Q 030511 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN----------------PEWEKSYQY-EIPVL 107 (176)
Q Consensus 45 ~~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD----------------~el~eky~~-~VPVL 107 (176)
...--+.+|++++|++|+..|..+-....+.+ .-..+|.+..+||... .+++++|+. +.|.+
T Consensus 41 ~~Kylllmfes~~C~yC~~~KKd~~~~krlrE-ylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtf 119 (182)
T COG2143 41 NDKYLLLMFESNGCSYCERFKKDLKNVKRLRE-YLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTF 119 (182)
T ss_pred cCcEEEEEEcCCCChHHHHHHHhhcchHHHHH-HHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceE
Confidence 33446899999999999999988744210000 0012578888888721 268888987 58998
Q ss_pred EEeccCCeEEEe--ccCCHHHHHHHH
Q 030511 108 ARVLSDGTEVLM--ACINRFRIEAWL 131 (176)
Q Consensus 108 ~i~~idGe~l~~--~~fd~deL~~~L 131 (176)
+.-..+|+-+.. |..++++....|
T Consensus 120 vFfdk~Gk~Il~lPGY~ppe~Fl~vl 145 (182)
T COG2143 120 VFFDKTGKTILELPGYMPPEQFLAVL 145 (182)
T ss_pred EEEcCCCCEEEecCCCCCHHHHHHHH
Confidence 743344554444 668888876555
No 201
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=95.30 E-value=0.08 Score=36.17 Aligned_cols=61 Identities=16% Similarity=0.270 Sum_probs=40.9
Q ss_pred CCCchHHHHHHHHHHhccCCCCCCCCcceEEEEc--C----CCHHHHHhcC--CccceeEEeccCCeEEEeccCCHHHHH
Q 030511 57 GCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDI--T----TNPEWEKSYQ--YEIPVLARVLSDGTEVLMACINRFRIE 128 (176)
Q Consensus 57 gC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDI--d----eD~el~eky~--~~VPVL~i~~idGe~l~~~~fd~deL~ 128 (176)
.||+|.++.-.|+.+ |++++..-+ . .+.+++.+++ ..||+|.. .+|+.+ .+-..|.
T Consensus 1 ~sP~a~Rv~i~l~~~----------gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~--~~g~vi----~eS~~I~ 64 (70)
T PF13409_consen 1 FSPFAHRVRIALEEK----------GLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVD--PDGTVI----NESLAIL 64 (70)
T ss_dssp T-HHHHHHHHHHHHH----------TGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEE--TTTEEE----ESHHHHH
T ss_pred CchHhHHHHHHHHHh----------CCCCEEEEEeeecCccccChhhhccCcCeEEEEEEE--CCCCEe----eCHHHHH
Confidence 499999999999987 666655444 1 1224555554 36999983 478754 3788888
Q ss_pred HHHHh
Q 030511 129 AWLSQ 133 (176)
Q Consensus 129 ~~L~~ 133 (176)
++|++
T Consensus 65 ~yL~~ 69 (70)
T PF13409_consen 65 EYLEE 69 (70)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88865
No 202
>PLN02395 glutathione S-transferase
Probab=95.20 E-value=0.18 Score=40.38 Aligned_cols=68 Identities=13% Similarity=0.220 Sum_probs=46.4
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCC------CHHHHHhcCC-ccceeEEeccCCeEEEecc
Q 030511 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT------NPEWEKSYQY-EIPVLARVLSDGTEVLMAC 121 (176)
Q Consensus 49 kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIde------D~el~eky~~-~VPVL~i~~idGe~l~~~~ 121 (176)
.++||+.++|+ +.+++-.|+.+ |++|+.+.|+. .+++.+..-. .||+|. .+|..+
T Consensus 2 ~~~ly~~~~~~-~~rv~~~L~e~----------gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~---~~~~~l---- 63 (215)
T PLN02395 2 VLKVYGPAFAS-PKRALVTLIEK----------GVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIV---DGDYKI---- 63 (215)
T ss_pred eEEEEcCCcCc-HHHHHHHHHHc----------CCCceEEEeccccCCcCCHHHHhhCCCCCCCEEE---ECCEEE----
Confidence 58999988865 77778778765 77777776652 2344443323 699998 566544
Q ss_pred CCHHHHHHHHHhC
Q 030511 122 INRFRIEAWLSQM 134 (176)
Q Consensus 122 fd~deL~~~L~~~ 134 (176)
++...|.++|.+.
T Consensus 64 ~ES~aI~~YL~~~ 76 (215)
T PLN02395 64 FESRAIMRYYAEK 76 (215)
T ss_pred EcHHHHHHHHHHH
Confidence 3677788888753
No 203
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=95.08 E-value=0.21 Score=42.92 Aligned_cols=60 Identities=12% Similarity=0.262 Sum_probs=40.2
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcC-------CC-H---HHH-HhcCCccceeE
Q 030511 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT-------TN-P---EWE-KSYQYEIPVLA 108 (176)
Q Consensus 46 ~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDId-------eD-~---el~-eky~~~VPVL~ 108 (176)
..+-|..|+.+||+.|..-...|.++.. .....|+.+.-|+++ ++ + ++. ++++...|++.
T Consensus 99 GK~vvl~FwAswCp~c~~e~p~L~~L~~---~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~ 170 (236)
T PLN02399 99 GKVLLIVNVASKCGLTSSNYSELSHLYE---KYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFD 170 (236)
T ss_pred CCeEEEEEEcCCCcchHHHHHHHHHHHH---HHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCcccc
Confidence 4457888999999999987777776531 123347777777764 22 2 233 46788889864
No 204
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=95.03 E-value=0.12 Score=44.12 Aligned_cols=63 Identities=19% Similarity=0.194 Sum_probs=45.0
Q ss_pred CCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcC--CCHHHHHhcC-C-ccceeEEeccCCeEEEeccCCHHHHHHH
Q 030511 55 KPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--TNPEWEKSYQ-Y-EIPVLARVLSDGTEVLMACINRFRIEAW 130 (176)
Q Consensus 55 kpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDId--eD~el~eky~-~-~VPVL~i~~idGe~l~~~~fd~deL~~~ 130 (176)
.+.|++|..+.-.|..+ |++|+.++|+ ..++++.+.+ . .||||. .+|..+ ++...|..+
T Consensus 16 ~~~cp~~~rv~i~L~ek----------gi~~e~~~vd~~~~~~~fl~inP~g~vPvL~---~~g~~l----~ES~aI~eY 78 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLK----------GVVFNVTTVDLKRKPEDLQNLAPGTHPPFLT---YNTEVK----TDVNKIEEF 78 (236)
T ss_pred CCCCHhHHHHHHHHHHc----------CCCcEEEEECCCCCCHHHHHHCcCCCCCEEE---ECCEEe----ecHHHHHHH
Confidence 46799999999999876 7777666665 4344555544 3 699998 567654 477888888
Q ss_pred HHhC
Q 030511 131 LSQM 134 (176)
Q Consensus 131 L~~~ 134 (176)
|.+.
T Consensus 79 L~e~ 82 (236)
T TIGR00862 79 LEET 82 (236)
T ss_pred HHHH
Confidence 8754
No 205
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=94.93 E-value=0.017 Score=50.42 Aligned_cols=82 Identities=18% Similarity=0.272 Sum_probs=64.5
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCeEEEe-ccCCHHH
Q 030511 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVLM-ACINRFR 126 (176)
Q Consensus 49 kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe~l~~-~~fd~de 126 (176)
-.+.|..||||-|...+..++..... ..+-++.+-+||++.|+-+.-+|-. ..|+|..+ .||++-.+ |.-|+++
T Consensus 42 wmi~~~ap~~psc~~~~~~~~~~a~~---s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHv-kDGeFrrysgaRdk~d 117 (248)
T KOG0913|consen 42 WMIEFGAPWCPSCSDLIPHLENFATV---SLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHV-KDGEFRRYSGARDKND 117 (248)
T ss_pred HHHHhcCCCCccccchHHHHhccCCc---cCCCceeEEEEEEEeccccceeeEEEecceEEEe-eccccccccCcccchh
Confidence 56789999999999999999997421 2235788999999999999988865 57999744 89976444 6678888
Q ss_pred HHHHHHhC
Q 030511 127 IEAWLSQM 134 (176)
Q Consensus 127 L~~~L~~~ 134 (176)
+..++...
T Consensus 118 fisf~~~r 125 (248)
T KOG0913|consen 118 FISFEEHR 125 (248)
T ss_pred HHHHHHhh
Confidence 88887543
No 206
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=94.90 E-value=0.084 Score=39.37 Aligned_cols=61 Identities=11% Similarity=-0.041 Sum_probs=38.8
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcC-----CCH----HHHHhcCCccceeE
Q 030511 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT-----TNP----EWEKSYQYEIPVLA 108 (176)
Q Consensus 45 ~~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDId-----eD~----el~eky~~~VPVL~ 108 (176)
...+.|..|...||+.|......|+++.. .....++.+.-|+.+ .++ ++.++++...|++.
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~---~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 91 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQ---KYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVAN 91 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHH---HcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEE
Confidence 44567888899999999999888887641 112234555444432 223 35566777777665
No 207
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.76 E-value=0.15 Score=45.54 Aligned_cols=84 Identities=18% Similarity=0.259 Sum_probs=60.0
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCC-cceEEEEcCCCHHHHHhcCC-ccceeEEeccCC-eEEEe-c
Q 030511 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHD-VDLQVRDITTNPEWEKSYQY-EIPVLARVLSDG-TEVLM-A 120 (176)
Q Consensus 45 ~~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~g-ie~eeIDIdeD~el~eky~~-~VPVL~i~~idG-e~l~~-~ 120 (176)
.....+..|..|||+.|........++. ...++ +.+-.||.+++.++.++|+. ..|++..- ..| +.+.+ +
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~-----~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f-~~~~~~~~~~~ 119 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLA-----KALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVF-RPGKKPIDYSG 119 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHH-----HHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEE-cCCCceeeccC
Confidence 3445799999999999999999988763 22334 56777888899999999997 58999843 444 33333 3
Q ss_pred cCCHHHHHHHHHhC
Q 030511 121 CINRFRIEAWLSQM 134 (176)
Q Consensus 121 ~fd~deL~~~L~~~ 134 (176)
.-+.+.+..++...
T Consensus 120 ~~~~~~~~~~~~~~ 133 (383)
T KOG0191|consen 120 PRNAESLAEFLIKE 133 (383)
T ss_pred cccHHHHHHHHHHh
Confidence 45556666666443
No 208
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=94.47 E-value=0.3 Score=37.70 Aligned_cols=61 Identities=13% Similarity=0.196 Sum_probs=37.8
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcC-------CCH----HHHHh-cCCccceeE
Q 030511 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT-------TNP----EWEKS-YQYEIPVLA 108 (176)
Q Consensus 45 ~~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDId-------eD~----el~ek-y~~~VPVL~ 108 (176)
...+-|+.|..+||+.|...-..|.++.. .....++.+--|+.. +++ ++.++ +++..|++.
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~---~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~ 93 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHR---ELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFS 93 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHH---HHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccc
Confidence 33345788999999999887776666521 122346777666641 222 24444 777778765
No 209
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.46 E-value=0.11 Score=46.24 Aligned_cols=81 Identities=14% Similarity=0.236 Sum_probs=63.1
Q ss_pred CCCCceEEEEeCCC------CCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHH----HHHhcCC-----ccceeE
Q 030511 44 SSSTRKLVLYSKPG------CCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPE----WEKSYQY-----EIPVLA 108 (176)
Q Consensus 44 ~~~~~kItLYTkpg------C~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~e----l~eky~~-----~VPVL~ 108 (176)
+-....|++|++.= =-.|..++.+|+.+ ++.|+|.||.-|-+ +.+.++. ..|.+|
T Consensus 127 Pgge~~VVvY~TsLRgvRkTfE~C~~VR~ilesf----------~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVF 196 (281)
T KOG2824|consen 127 PGGEDRVVVYTTSLRGVRKTFEDCNAVRAILESF----------RVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVF 196 (281)
T ss_pred CCCCceEEEEEcccchhhhhHHHHHHHHHHHHhC----------ceEEEEecccccHHHHHHHHHHHhcccccCccCeEE
Confidence 45555899999653 34699999999886 89999999998865 4444444 369888
Q ss_pred EeccCCeEEEeccCCHHHHHHHHHhCCchhHHH
Q 030511 109 RVLSDGTEVLMACINRFRIEAWLSQMSLDCVMA 141 (176)
Q Consensus 109 i~~idGe~l~~~~fd~deL~~~L~~~~l~~~~~ 141 (176)
++|+.++ +.++|.++-+...|+.++.
T Consensus 197 ---V~GryIG----gaeeV~~LnE~GkL~~lL~ 222 (281)
T KOG2824|consen 197 ---VKGRYIG----GAEEVVRLNEEGKLGKLLK 222 (281)
T ss_pred ---EccEEec----cHHHhhhhhhcchHHHHHh
Confidence 8999886 6888999988888888874
No 210
>smart00594 UAS UAS domain.
Probab=94.38 E-value=0.41 Score=36.13 Aligned_cols=82 Identities=12% Similarity=0.041 Sum_probs=50.8
Q ss_pred ceEEEEeCCCCCchHHHHHH-HHHHhccCCCCCCCCcceEEEEcCCCH--HHHHhcCC-ccceeEEeccCC-e----EE-
Q 030511 48 RKLVLYSKPGCCLCDGLKEK-LQAAFLLSGPDSLHDVDLQVRDITTNP--EWEKSYQY-EIPVLARVLSDG-T----EV- 117 (176)
Q Consensus 48 ~kItLYTkpgC~lCe~aKe~-Le~l~~~~~~~~~~gie~eeIDIdeD~--el~eky~~-~VPVL~i~~idG-e----~l- 117 (176)
..++.+..+||+.|+...+- +.+-. +.+ .-..++-+-.+|+++++ ++..+|+. ..|.+.+...+| + .+
T Consensus 29 ~~lv~~~~~~c~~c~~~~r~vl~~~~-V~~-~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~~~~ 106 (122)
T smart00594 29 LLWLYLHSQDSPDSQVFNRDVLCNEA-VKS-LIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEWVG 106 (122)
T ss_pred CEEEEEeCCCCchHHHHHHHHccCHH-HHH-HHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEEEec
Confidence 56777889999999997764 32210 000 00124556668888554 57888986 689998654554 2 11
Q ss_pred -EeccCCHHHHHHHH
Q 030511 118 -LMACINRFRIEAWL 131 (176)
Q Consensus 118 -~~~~fd~deL~~~L 131 (176)
..|..++++|...|
T Consensus 107 ~~~G~~~~~~l~~~l 121 (122)
T smart00594 107 VVEGEISPEELMTFL 121 (122)
T ss_pred cccCCCCHHHHHHhh
Confidence 12667777777665
No 211
>PHA03075 glutaredoxin-like protein; Provisional
Probab=94.35 E-value=0.068 Score=42.25 Aligned_cols=37 Identities=27% Similarity=0.624 Sum_probs=30.0
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcC
Q 030511 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT 91 (176)
Q Consensus 47 ~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDId 91 (176)
..+++||+||-|+.|+-+-++|.++. ...++--|||-
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~le--------deY~ilrVNIl 38 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELE--------DEYDILRVNIL 38 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhh--------ccccEEEEEee
Confidence 35799999999999999999997762 25667777774
No 212
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=94.30 E-value=0.04 Score=43.58 Aligned_cols=68 Identities=13% Similarity=-0.016 Sum_probs=36.3
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCCccceeEEeccCCeE
Q 030511 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGTE 116 (176)
Q Consensus 48 ~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~~VPVL~i~~idGe~ 116 (176)
+-+.+|++.||++|..+++..-+-....... ..++-...+|++..+.-....+..+|.++....+|+.
T Consensus 25 pvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l-~~~Fv~V~l~~d~td~~~~~~g~~vPtivFld~~g~v 92 (130)
T cd02960 25 PLMVIHHLEDCPHSQALKKAFAEHKEIQKLA-QEDFIMLNLVHETTDKNLSPDGQYVPRIMFVDPSLTV 92 (130)
T ss_pred eEEEEEeCCcCHhHHHHHHHhhCCHHHHHHH-HhCeEEEEEEeccCCCCcCccCcccCeEEEECCCCCC
Confidence 3466788999999999998752210000000 0133333445442211111355679999865566654
No 213
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=94.19 E-value=0.54 Score=32.50 Aligned_cols=56 Identities=20% Similarity=0.342 Sum_probs=38.5
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcC--CC----HHHHHhcCC--ccceeEEeccC-CeEEE
Q 030511 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--TN----PEWEKSYQY--EIPVLARVLSD-GTEVL 118 (176)
Q Consensus 48 ~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDId--eD----~el~eky~~--~VPVL~i~~id-Ge~l~ 118 (176)
+++++|.-++ .|+.++-.|+.. |++|+.+.++ .+ +++.+..-. .||+|. .+ |..+.
T Consensus 1 ~~l~l~~~~~--~~~~~r~~l~~~----------gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~---~~~~~~l~ 65 (76)
T PF02798_consen 1 MTLTLYNGRG--RSERIRLLLAEK----------GVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALE---DGDGFVLT 65 (76)
T ss_dssp EEEEEESSST--TTHHHHHHHHHT----------T--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEE---ETTTEEEE
T ss_pred CEEEEECCCC--chHHHHHHHHHh----------cccCceEEEecccccccchhhhhcccccceeeEEE---ECCCCEEE
Confidence 4689999888 888888888865 6666665554 33 566666555 699998 55 76653
No 214
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=94.02 E-value=0.23 Score=39.56 Aligned_cols=67 Identities=19% Similarity=0.251 Sum_probs=47.0
Q ss_pred EEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCC-------CHHHHHhcCC-ccceeEEeccCCeEEEeccC
Q 030511 51 VLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT-------NPEWEKSYQY-EIPVLARVLSDGTEVLMACI 122 (176)
Q Consensus 51 tLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIde-------D~el~eky~~-~VPVL~i~~idGe~l~~~~f 122 (176)
+||+-+.|+.|..+.-.|... |++|+.+.++- .+++.+..-. .||+|. .||..+.
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~----------gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~---~~g~~l~---- 63 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALK----------GIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLD---IDGEVLT---- 63 (210)
T ss_pred CcccCCCCCchHHHHHHHHHC----------CCCceEEecccccccccCChhhhhcCCCCcCCEEE---ECCEEee----
Confidence 479888999999999999876 78888777662 1233332222 699998 6786543
Q ss_pred CHHHHHHHHHhC
Q 030511 123 NRFRIEAWLSQM 134 (176)
Q Consensus 123 d~deL~~~L~~~ 134 (176)
....|..+|.+.
T Consensus 64 ES~aI~~yl~~~ 75 (210)
T TIGR01262 64 QSLAIIEYLEET 75 (210)
T ss_pred cHHHHHHHHHHh
Confidence 666777777654
No 215
>PLN02412 probable glutathione peroxidase
Probab=93.92 E-value=0.46 Score=37.75 Aligned_cols=120 Identities=18% Similarity=0.200 Sum_probs=61.4
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcC-------CCH-H----HHHhcCCccceeEEeccC
Q 030511 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT-------TNP-E----WEKSYQYEIPVLARVLSD 113 (176)
Q Consensus 46 ~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDId-------eD~-e----l~eky~~~VPVL~i~~id 113 (176)
..+.|..|+.+||+.|......|.++.. .....|+.+.-|..+ ++. + +.++++...|++.....+
T Consensus 29 gk~vlv~f~a~~C~~c~~e~~~l~~l~~---~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~ 105 (167)
T PLN02412 29 GKVLLIVNVASKCGLTDSNYKELNVLYE---KYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVN 105 (167)
T ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHHH---HHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeC
Confidence 3456677889999999975555555421 022336666666653 122 2 246778889997521134
Q ss_pred CeEEEeccCCHHHHHHHHHh--CCch--hHHHHhhhhhhc-c-cccCCCCCCCCCHHHHHHHHHHHhcC
Q 030511 114 GTEVLMACINRFRIEAWLSQ--MSLD--CVMAYQQLSFLN-I-VEALPRLSPRIGVELIQKKIAAALRQ 176 (176)
Q Consensus 114 Ge~l~~~~fd~deL~~~L~~--~~l~--~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (176)
|... .....++.. .++- .+... --+|+= . -+..=|..+-...+.+++.|+++|+|
T Consensus 106 g~~~-------~~~~~~~~~~~~~~~~~~v~~~-p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~~ 166 (167)
T PLN02412 106 GKNT-------APLYKYLKAEKGGLFGDAIKWN-FTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLGQ 166 (167)
T ss_pred CCCC-------CHHHHHHHhhCCCCCCCCcCCC-CeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHhh
Confidence 4221 122222221 1110 01111 112221 0 11223444666788899999998876
No 216
>PRK10357 putative glutathione S-transferase; Provisional
Probab=93.86 E-value=0.34 Score=38.48 Aligned_cols=69 Identities=10% Similarity=0.145 Sum_probs=47.7
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCC--CHHHHHhcCC--ccceeEEeccCCeEEEeccCCHH
Q 030511 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT--NPEWEKSYQY--EIPVLARVLSDGTEVLMACINRF 125 (176)
Q Consensus 50 ItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIde--D~el~eky~~--~VPVL~i~~idGe~l~~~~fd~d 125 (176)
++||+.+.|+.+..+.-.|+.. |++|+.++++. ++....+++- .||||+. .||..+ ++..
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~----------gv~ye~~~~~~~~~~~~~~~~nP~g~vP~L~~--~~g~~l----~eS~ 64 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEK----------GITFEFVNELPYNADNGVAQYNPLGKVPALVT--EEGECW----FDSP 64 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHc----------CCCCeEEecCCCCCchhhhhcCCccCCCeEEe--CCCCee----ecHH
Confidence 3799999999999998888776 88888877763 3333444543 6999972 355544 3556
Q ss_pred HHHHHHHhC
Q 030511 126 RIEAWLSQM 134 (176)
Q Consensus 126 eL~~~L~~~ 134 (176)
.|..+|.+.
T Consensus 65 aI~~yL~~~ 73 (202)
T PRK10357 65 IIAEYIELL 73 (202)
T ss_pred HHHHHHHHh
Confidence 666666644
No 217
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.84 E-value=0.33 Score=39.05 Aligned_cols=70 Identities=16% Similarity=0.303 Sum_probs=47.5
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCC-----HHHHHhcCC-ccceeEEeccCCeEEEeccCC
Q 030511 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN-----PEWEKSYQY-EIPVLARVLSDGTEVLMACIN 123 (176)
Q Consensus 50 ItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD-----~el~eky~~-~VPVL~i~~idGe~l~~~~fd 123 (176)
.++|+.+.+++|.++.-.|..+ |++|+.+.|+-. +++.+..-. .||||.. .||..+ .+
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~----------g~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~--~~~~~l----~E 64 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEK----------GLPYEIVLVDLDAEQKPPDFLALNPLGKVPALVD--DDGEVL----TE 64 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHc----------CCCceEEEeCcccccCCHHHHhcCCCCCCCEEee--CCCCee----ec
Confidence 3789999999999999999876 666666666533 233333333 6999982 333333 36
Q ss_pred HHHHHHHHHhCC
Q 030511 124 RFRIEAWLSQMS 135 (176)
Q Consensus 124 ~deL~~~L~~~~ 135 (176)
...|..+|.+..
T Consensus 65 S~AI~~YL~~~~ 76 (211)
T COG0625 65 SGAILEYLAERY 76 (211)
T ss_pred HHHHHHHHHhhC
Confidence 777888887655
No 218
>PLN02378 glutathione S-transferase DHAR1
Probab=93.69 E-value=0.3 Score=39.81 Aligned_cols=62 Identities=19% Similarity=0.285 Sum_probs=41.7
Q ss_pred CCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcC--CCHHHHHhcCC--ccceeEEeccCCeEEEeccCCHHHHHHHH
Q 030511 56 PGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--TNPEWEKSYQY--EIPVLARVLSDGTEVLMACINRFRIEAWL 131 (176)
Q Consensus 56 pgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDId--eD~el~eky~~--~VPVL~i~~idGe~l~~~~fd~deL~~~L 131 (176)
..|++|.++.-.|+.+ |++|+.+.|+ ..++++.+.+- .||+|. .||..+ +....|..+|
T Consensus 18 ~~~p~~~rv~~~L~e~----------gl~~e~~~v~~~~~~~~~l~inP~G~VPvL~---~~~~~l----~ES~aI~~YL 80 (213)
T PLN02378 18 GDCPFSQRALLTLEEK----------SLTYKIHLINLSDKPQWFLDISPQGKVPVLK---IDDKWV----TDSDVIVGIL 80 (213)
T ss_pred CCCcchHHHHHHHHHc----------CCCCeEEEeCcccCCHHHHHhCCCCCCCEEE---ECCEEe----cCHHHHHHHH
Confidence 4599999999999876 6666655554 44444444443 699998 677544 3667777777
Q ss_pred HhC
Q 030511 132 SQM 134 (176)
Q Consensus 132 ~~~ 134 (176)
.+.
T Consensus 81 ~~~ 83 (213)
T PLN02378 81 EEK 83 (213)
T ss_pred HHh
Confidence 653
No 219
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=93.57 E-value=0.16 Score=37.77 Aligned_cols=42 Identities=17% Similarity=0.330 Sum_probs=30.9
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcC
Q 030511 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT 91 (176)
Q Consensus 45 ~~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDId 91 (176)
....+|++|+.++||+|....+.+.++.. ....+.+..++..
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~-----~~~~~~~~~~~~p 45 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLK-----EDPDVRVVFKEFP 45 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHH-----HCCCceEEEEeCC
Confidence 46678999999999999999999988531 1224566666653
No 220
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=93.31 E-value=0.21 Score=37.15 Aligned_cols=59 Identities=19% Similarity=0.275 Sum_probs=39.2
Q ss_pred CceEEEE-eCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHH---HHHhcCCccceeE
Q 030511 47 TRKLVLY-SKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPE---WEKSYQYEIPVLA 108 (176)
Q Consensus 47 ~~kItLY-TkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~e---l~eky~~~VPVL~ 108 (176)
...|.+| ...||+.|..-...|.++.. .....++.+.-|..+..+. +.++++...|++.
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~---~~~~~~v~vv~V~~~~~~~~~~~~~~~~~~~p~~~ 86 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLP---ELDALGVELVAVGPESPEKLEAFDKGKFLPFPVYA 86 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHH---HHHhcCeEEEEEeCCCHHHHHHHHHhcCCCCeEEE
Confidence 3444444 58999999998888877631 0112477888888775443 4556777888876
No 221
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=92.93 E-value=0.19 Score=42.98 Aligned_cols=27 Identities=15% Similarity=0.490 Sum_probs=23.3
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHH
Q 030511 45 SSTRKLVLYSKPGCCLCDGLKEKLQAA 71 (176)
Q Consensus 45 ~~~~kItLYTkpgC~lCe~aKe~Le~l 71 (176)
.....|++||-+.||+|+++.+.+.+.
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~ 142 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPW 142 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHH
Confidence 455679999999999999999888765
No 222
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=92.91 E-value=0.57 Score=38.49 Aligned_cols=68 Identities=13% Similarity=0.201 Sum_probs=36.7
Q ss_pred EEEEeCCCCCchHHHHHH-HHHHhccCCCCC--CCCcceEEEEcCCCHHHHHhc--------CC-ccceeEEeccCCeEE
Q 030511 50 LVLYSKPGCCLCDGLKEK-LQAAFLLSGPDS--LHDVDLQVRDITTNPEWEKSY--------QY-EIPVLARVLSDGTEV 117 (176)
Q Consensus 50 ItLYTkpgC~lCe~aKe~-Le~l~~~~~~~~--~~gie~eeIDIdeD~el~eky--------~~-~VPVL~i~~idGe~l 117 (176)
+.-.+.+|||+|+.+.+. +++... .+ ...|--..+|-++.|++...| |. +-|.-+....||+.+
T Consensus 41 fl~ig~~~C~wChvM~~esf~d~eV----a~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vfltPdg~p~ 116 (163)
T PF03190_consen 41 FLSIGYSWCHWCHVMERESFSDPEV----AEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVFLTPDGKPF 116 (163)
T ss_dssp EEEEE-TT-HHHHHHHHHTTT-HHH----HHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEEE-TTS-EE
T ss_pred EEEEEecCCcchhhhcccCcCCHHH----HHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCceEEECCCCCee
Confidence 444569999999977752 211000 00 014445568888889887777 33 578777666889887
Q ss_pred Eecc
Q 030511 118 LMAC 121 (176)
Q Consensus 118 ~~~~ 121 (176)
+-+.
T Consensus 117 ~~~t 120 (163)
T PF03190_consen 117 FGGT 120 (163)
T ss_dssp EEES
T ss_pred eeee
Confidence 6544
No 223
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=92.84 E-value=0.19 Score=47.78 Aligned_cols=85 Identities=13% Similarity=0.090 Sum_probs=56.9
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCCccceeEEeccCCe--E-EEeccCCHH
Q 030511 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGT--E-VLMACINRF 125 (176)
Q Consensus 49 kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~~VPVL~i~~idGe--~-l~~~~fd~d 125 (176)
.++-|.+|||+.|..++..++++.+.- ....++-+-.+|.+.|+--..++.. .|+|..--.+++ . .+-|.=+.+
T Consensus 387 VLvEfyAPWCgHCk~laP~~eeLAe~~--~~~~~vviAKmDaTaNd~~~~~~~~-fPTI~~~pag~k~~pv~y~g~R~le 463 (493)
T KOG0190|consen 387 VLVEFYAPWCGHCKALAPIYEELAEKY--KDDENVVIAKMDATANDVPSLKVDG-FPTILFFPAGHKSNPVIYNGDRTLE 463 (493)
T ss_pred eEEEEcCcccchhhhhhhHHHHHHHHh--cCCCCcEEEEeccccccCccccccc-cceEEEecCCCCCCCcccCCCcchH
Confidence 577888999999999999988875211 2234788899999988753323322 799873212221 2 233566778
Q ss_pred HHHHHHHhCCc
Q 030511 126 RIEAWLSQMSL 136 (176)
Q Consensus 126 eL~~~L~~~~l 136 (176)
++..++...|-
T Consensus 464 ~~~~fi~~~a~ 474 (493)
T KOG0190|consen 464 DLKKFIKKSAT 474 (493)
T ss_pred HHHhhhccCCC
Confidence 88888887775
No 224
>PTZ00256 glutathione peroxidase; Provisional
Probab=92.71 E-value=0.82 Score=36.75 Aligned_cols=81 Identities=12% Similarity=0.238 Sum_probs=44.6
Q ss_pred ccccceeccccc-cccCCCCCCCCce--EEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCC-------CH
Q 030511 25 RRSRWGFSPLAY-SSSSSSSSSSTRK--LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT-------NP 94 (176)
Q Consensus 25 ~~~~~~~~~~~~-~~~~~~~~~~~~k--ItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIde-------D~ 94 (176)
-.+.+.|+--.. |...+.+...... |.+|..+||+.|..-...|+++.. .....++.+--|++++ +.
T Consensus 17 ~~~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~---~~~~~gv~vv~vs~~~~~~~~~~~~ 93 (183)
T PTZ00256 17 TKSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYK---QYKSQGLEILAFPCNQFMEQEPWDE 93 (183)
T ss_pred CCcccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHH---HHhhCCcEEEEEecccccccCCCCH
Confidence 345566653322 2222323334433 356789999999987777766521 1223367776676531 11
Q ss_pred H----H-HHhcCCccceeE
Q 030511 95 E----W-EKSYQYEIPVLA 108 (176)
Q Consensus 95 e----l-~eky~~~VPVL~ 108 (176)
+ + .++++...|++.
T Consensus 94 ~~~~~f~~~~~~~~fpv~~ 112 (183)
T PTZ00256 94 PEIKEYVQKKFNVDFPLFQ 112 (183)
T ss_pred HHHHHHHHHhcCCCCCCce
Confidence 2 2 246777888874
No 225
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=92.60 E-value=0.48 Score=40.90 Aligned_cols=62 Identities=19% Similarity=0.338 Sum_probs=42.5
Q ss_pred CCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcC--CCHHHHHhcCC--ccceeEEeccCCeEEEeccCCHHHHHHHH
Q 030511 56 PGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--TNPEWEKSYQY--EIPVLARVLSDGTEVLMACINRFRIEAWL 131 (176)
Q Consensus 56 pgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDId--eD~el~eky~~--~VPVL~i~~idGe~l~~~~fd~deL~~~L 131 (176)
-.|++|..+.-.|+.+ |++|+.+.|+ ..++++.+..- .||||. .||..+ .+-..|..+|
T Consensus 71 g~cp~s~rV~i~L~ek----------gi~ye~~~vdl~~~~~~fl~iNP~GkVPvL~---~d~~~L----~ES~aI~~YL 133 (265)
T PLN02817 71 GDCPFCQRVLLTLEEK----------HLPYDMKLVDLTNKPEWFLKISPEGKVPVVK---LDEKWV----ADSDVITQAL 133 (265)
T ss_pred CCCcHHHHHHHHHHHc----------CCCCEEEEeCcCcCCHHHHhhCCCCCCCEEE---ECCEEE----ecHHHHHHHH
Confidence 3499999999999886 6777765554 44455555543 699998 566543 3556677777
Q ss_pred HhC
Q 030511 132 SQM 134 (176)
Q Consensus 132 ~~~ 134 (176)
.+.
T Consensus 134 ~e~ 136 (265)
T PLN02817 134 EEK 136 (265)
T ss_pred HHH
Confidence 554
No 226
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=92.46 E-value=0.59 Score=40.81 Aligned_cols=86 Identities=19% Similarity=0.215 Sum_probs=59.7
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCeEEEe-----
Q 030511 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVLM----- 119 (176)
Q Consensus 46 ~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe~l~~----- 119 (176)
...-|+.+..++++-|..+-..|..++ ..+..+.|..|.-..-+ +..+|.. .+|+|+ ++.+|..+.-
T Consensus 146 ~~~VVVHiY~~~~~~C~~mn~~L~~LA-----~kyp~vKFvkI~a~~~~-~~~~f~~~~LPtll-vYk~G~l~~~~V~l~ 218 (265)
T PF02114_consen 146 STWVVVHIYEPGFPRCEIMNSCLECLA-----RKYPEVKFVKIRASKCP-ASENFPDKNLPTLL-VYKNGDLIGNFVGLT 218 (265)
T ss_dssp T-EEEEEEE-TTSCCHHHHHHHHHHHH-----HH-TTSEEEEEEECGCC-TTTTS-TTC-SEEE-EEETTEEEEEECTGG
T ss_pred CcEEEEEEEeCCCchHHHHHHHHHHHH-----HhCCceEEEEEehhccC-cccCCcccCCCEEE-EEECCEEEEeEEehH
Confidence 344577888999999999999999885 23446778877775433 6677876 589998 4688875332
Q ss_pred ----ccCCHHHHHHHHHhCCchh
Q 030511 120 ----ACINRFRIEAWLSQMSLDC 138 (176)
Q Consensus 120 ----~~fd~deL~~~L~~~~l~~ 138 (176)
..|...+|..+|.+.|+-+
T Consensus 219 ~~~g~df~~~dlE~~L~~~G~l~ 241 (265)
T PF02114_consen 219 DLLGDDFFTEDLEAFLIEYGVLP 241 (265)
T ss_dssp GCT-TT--HHHHHHHHHTTTSSS
T ss_pred HhcCCCCCHHHHHHHHHHcCCCC
Confidence 2488889999999998754
No 227
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=92.38 E-value=0.2 Score=37.69 Aligned_cols=58 Identities=9% Similarity=0.145 Sum_probs=34.7
Q ss_pred ceEEEE-eCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCH---HHHHhcCCccceeE
Q 030511 48 RKLVLY-SKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP---EWEKSYQYEIPVLA 108 (176)
Q Consensus 48 ~kItLY-TkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~---el~eky~~~VPVL~ 108 (176)
..|.+| ...||+.|......|.+... .....++.+.-|..+..+ ++.++++...|++.
T Consensus 30 ~~vl~f~~~~~c~~C~~~~~~l~~~~~---~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~ 91 (149)
T cd03018 30 PVVLVFFPLAFTPVCTKELCALRDSLE---LFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLS 91 (149)
T ss_pred eEEEEEeCCCCCccHHHHHHHHHHHHH---HHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEec
Confidence 334444 48999999987777766531 012236666666655322 35566677777654
No 228
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=92.19 E-value=0.38 Score=34.69 Aligned_cols=57 Identities=18% Similarity=0.165 Sum_probs=44.0
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceeE
Q 030511 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLA 108 (176)
Q Consensus 49 kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~-~VPVL~ 108 (176)
.+.||....=+.-..+.+-|.++++ ... ...+++++|||.++|++++.++. -+|+|+
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e--~~l-~~~~~LeVIDv~~~P~lAe~~~ivAtPtLv 60 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILE--ELL-GGPYELEVIDVLKQPQLAEEDKIVATPTLV 60 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHH--Hhc-CCcEEEEEEEcccCHhHHhhCCEEEechhh
Confidence 4677877777777777777777652 111 34789999999999999999997 589987
No 229
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=92.19 E-value=0.35 Score=46.73 Aligned_cols=85 Identities=19% Similarity=0.208 Sum_probs=57.7
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCC-H---HHHHhcCC-ccceeEEeccCCeEE--Eec
Q 030511 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN-P---EWEKSYQY-EIPVLARVLSDGTEV--LMA 120 (176)
Q Consensus 48 ~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD-~---el~eky~~-~VPVL~i~~idGe~l--~~~ 120 (176)
+-..-||.+||--|++.|+..-... .+..+.+++-+=+.|++.| + ++.++|+. .+|.++.-..+|++. --+
T Consensus 476 pVmlDfyAdWCvtCK~~e~~tfsd~--~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff~~~g~e~~~l~g 553 (569)
T COG4232 476 PVMLDFYADWCVTCKENEKYTFSDP--QVQQALQDVVLLQADVTANDPAITALLKRLGVFGVPTYLFFGPQGSEPEILTG 553 (569)
T ss_pred cEEEeeehhHHHHhHhhhhhccCcH--HHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEECCCCCcCcCCcc
Confidence 5577899999999999998863210 0113345888889999965 3 47778886 899998433356542 225
Q ss_pred cCCHHHHHHHHHhC
Q 030511 121 CINRFRIEAWLSQM 134 (176)
Q Consensus 121 ~fd~deL~~~L~~~ 134 (176)
..+.+.+.+.++++
T Consensus 554 f~~a~~~~~~l~~~ 567 (569)
T COG4232 554 FLTADAFLEHLERA 567 (569)
T ss_pred eecHHHHHHHHHHh
Confidence 56777777777654
No 230
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=92.04 E-value=0.39 Score=34.73 Aligned_cols=62 Identities=13% Similarity=0.228 Sum_probs=42.0
Q ss_pred CCCCceEEEEeCC-CCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCH---HHHHhcCCccceeE
Q 030511 44 SSSTRKLVLYSKP-GCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP---EWEKSYQYEIPVLA 108 (176)
Q Consensus 44 ~~~~~kItLYTkp-gC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~---el~eky~~~VPVL~ 108 (176)
-...+.|..|... ||+.|...-..|.+... .....++.+..|..+... ++.++++...|++.
T Consensus 23 l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~---~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~ 88 (124)
T PF00578_consen 23 LKGKPVVLFFWPTAWCPFCQAELPELNELYK---KYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLS 88 (124)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHHHHHHHHH---HHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEE
T ss_pred HCCCcEEEEEeCccCccccccchhHHHHHhh---hhccceEEeeecccccccchhhhhhhhcccccccc
Confidence 3445566666666 99999888777776531 012347888888886543 46677788888887
No 231
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=92.04 E-value=0.09 Score=44.68 Aligned_cols=54 Identities=17% Similarity=0.357 Sum_probs=35.6
Q ss_pred EEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHH--HHHhcC-CccceeEEeccCCeE
Q 030511 51 VLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPE--WEKSYQ-YEIPVLARVLSDGTE 116 (176)
Q Consensus 51 tLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~e--l~eky~-~~VPVL~i~~idGe~ 116 (176)
.+|-=+.||+|.+++-+.-- .++++++.-.+.|++ -...-| -.||+|.. .||+.
T Consensus 2 kLYIYdHCPfcvrarmi~Gl----------~nipve~~vL~nDDe~Tp~rmiG~KqVPiL~K--edg~~ 58 (215)
T COG2999 2 KLYIYDHCPFCVRARMIFGL----------KNIPVELHVLLNDDEETPIRMIGQKQVPILQK--EDGRA 58 (215)
T ss_pred ceeEeccChHHHHHHHHhhc----------cCCChhhheeccCcccChhhhhcccccceEEc--ccccc
Confidence 35666899999999887533 377777666654433 223344 47999984 56664
No 232
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.02 E-value=0.4 Score=41.48 Aligned_cols=58 Identities=14% Similarity=0.227 Sum_probs=48.0
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcC--CCHHHHHhcC-C--ccceeEEeccCCeEEE
Q 030511 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--TNPEWEKSYQ-Y--EIPVLARVLSDGTEVL 118 (176)
Q Consensus 48 ~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDId--eD~el~eky~-~--~VPVL~i~~idGe~l~ 118 (176)
-.|.||+-=.||+=.+++=+|+.. |++|+.+++| ..++|.-+.+ . .||||. .+|+.++
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~K----------gI~yE~veedl~~Ks~~ll~~np~hkKVPvL~---Hn~k~i~ 70 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLK----------GIPYEYVEEDLTNKSEWLLEKNPVHKKVPVLE---HNGKPIC 70 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhc----------CCceEEEecCCCCCCHHHHHhccccccCCEEE---ECCceeh
Confidence 569999999999999999999876 8888887777 3567887776 3 699999 7888765
No 233
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=91.70 E-value=2.1 Score=31.73 Aligned_cols=72 Identities=14% Similarity=0.049 Sum_probs=49.0
Q ss_pred CCCCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCCccceeEEeccCC---eEEEec
Q 030511 44 SSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDG---TEVLMA 120 (176)
Q Consensus 44 ~~~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~~VPVL~i~~idG---e~l~~~ 120 (176)
...+..+.+|+.++ ..|+++++.|+.++.++ ..+.+++.|..+ .+|.+.+. .+| ...|.|
T Consensus 17 l~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lS-----dkI~~~~~~~~~----------~~P~~~i~-~~~~~~gIrF~G 79 (94)
T cd02974 17 LENPVELVASLDDS-EKSAELLELLEEIASLS-----DKITLEEDNDDE----------RKPSFSIN-RPGEDTGIRFAG 79 (94)
T ss_pred CCCCEEEEEEeCCC-cchHHHHHHHHHHHHhC-----CceEEEEecCCC----------CCCEEEEe-cCCCcccEEEEe
Confidence 34566788999888 99999999999986432 367777766533 47888743 233 245556
Q ss_pred cCCHHHHHHHHH
Q 030511 121 CINRFRIEAWLS 132 (176)
Q Consensus 121 ~fd~deL~~~L~ 132 (176)
-+.--|+..++.
T Consensus 80 iP~GhEf~Slil 91 (94)
T cd02974 80 IPMGHEFTSLVL 91 (94)
T ss_pred cCCchhHHHHHH
Confidence 666666666653
No 234
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=91.61 E-value=1.4 Score=30.11 Aligned_cols=50 Identities=18% Similarity=0.086 Sum_probs=34.8
Q ss_pred CCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCC----HHHHHhcC--CccceeEEeccCCeEE
Q 030511 55 KPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN----PEWEKSYQ--YEIPVLARVLSDGTEV 117 (176)
Q Consensus 55 kpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD----~el~eky~--~~VPVL~i~~idGe~l 117 (176)
...|++|..+.-.|+.. |++|+.++++-. .+.+.+.. -.||+|. .+|..+
T Consensus 7 ~~~s~~s~~v~~~L~~~----------gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~---~~g~~l 62 (73)
T cd03043 7 KNYSSWSLRPWLLLKAA----------GIPFEEILVPLYTPDTRARILEFSPTGKVPVLV---DGGIVV 62 (73)
T ss_pred CCCCHHHHHHHHHHHHc----------CCCCEEEEeCCCCccccHHHHhhCCCCcCCEEE---ECCEEE
Confidence 56788999999998876 888888777632 12333333 3699998 677654
No 235
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=91.60 E-value=1.8 Score=34.95 Aligned_cols=70 Identities=19% Similarity=0.293 Sum_probs=44.2
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcC--CC----HHHHHhcCC-ccceeEEec--cCCe--EEE
Q 030511 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--TN----PEWEKSYQY-EIPVLARVL--SDGT--EVL 118 (176)
Q Consensus 50 ItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDId--eD----~el~eky~~-~VPVL~i~~--idGe--~l~ 118 (176)
++||..+ ++.|..+.-.|+.+ |++|+.++|+ .+ +++.+..-. .||||.... .||+ .+
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~----------gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L- 69 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEA----------ELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSL- 69 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHc----------CCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeE-
Confidence 5799887 58899988888876 7777776665 22 344433223 699997210 1342 23
Q ss_pred eccCCHHHHHHHHHhC
Q 030511 119 MACINRFRIEAWLSQM 134 (176)
Q Consensus 119 ~~~fd~deL~~~L~~~ 134 (176)
++...|..+|.+.
T Consensus 70 ---~ES~AI~~YL~~~ 82 (215)
T PRK13972 70 ---FESGAILLYLAEK 82 (215)
T ss_pred ---EcHHHHHHHHHHh
Confidence 4667777777644
No 236
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=91.29 E-value=1.4 Score=34.55 Aligned_cols=76 Identities=18% Similarity=0.401 Sum_probs=45.1
Q ss_pred CceEEEEeCCCCC---chH--------HHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHH----------hcCC-cc
Q 030511 47 TRKLVLYSKPGCC---LCD--------GLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEK----------SYQY-EI 104 (176)
Q Consensus 47 ~~kItLYTkpgC~---lCe--------~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~e----------ky~~-~V 104 (176)
|.+|.+|--+-|+ -|- +.-..++.+ ..+|++++.+|+.+||+.+. +-|. ..
T Consensus 1 M~~i~ifepamCC~tGvCG~~vd~eL~~~a~~~~~L-------k~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~L 73 (123)
T PF06953_consen 1 MKKIEIFEPAMCCSTGVCGPSVDPELVRFAADLDWL-------KEQGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEAL 73 (123)
T ss_dssp --EEEEEE-S-SSTTS-SSSS--HHHHHHHHHHHHH-------HHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-
T ss_pred CCceEEeccccccccCccCCCCCHHHHHHHHHHHHH-------HhCCceEEEEccccCHHHHHhCHHHHHHHHHcCcccC
Confidence 5689999888773 442 122233333 23499999999999876443 3355 47
Q ss_pred ceeEEeccCCeEEEecc-CCHHHHHHHHH
Q 030511 105 PVLARVLSDGTEVLMAC-INRFRIEAWLS 132 (176)
Q Consensus 105 PVL~i~~idGe~l~~~~-fd~deL~~~L~ 132 (176)
|+++ +||+.+..|+ ++.+||.+|++
T Consensus 74 Pitl---VdGeiv~~G~YPt~eEl~~~~~ 99 (123)
T PF06953_consen 74 PITL---VDGEIVKTGRYPTNEELAEWLG 99 (123)
T ss_dssp SEEE---ETTEEEEESS---HHHHHHHHT
T ss_pred CEEE---ECCEEEEecCCCCHHHHHHHhC
Confidence 9999 8999888766 67777888775
No 237
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=91.15 E-value=3.5 Score=31.67 Aligned_cols=81 Identities=19% Similarity=0.224 Sum_probs=59.8
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCC---ccceeEEeccCCeEEEe---ccC
Q 030511 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY---EIPVLARVLSDGTEVLM---ACI 122 (176)
Q Consensus 49 kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~---~VPVL~i~~idGe~l~~---~~f 122 (176)
.+.+|........+..+..|+.++. .....+.|..+|.+..+++...+|. .+|++++....+...++ +.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~a~----~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~P~~vi~~~~~~~~~~~~~~~~ 173 (184)
T PF13848_consen 98 VLILFDNKDNESTEAFKKELQDIAK----KFKGKINFVYVDADDFPRLLKYFGIDEDDLPALVIFDSNKGKYYYLPEGEI 173 (184)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHH----CTTTTSEEEEEETTTTHHHHHHTTTTTSSSSEEEEEETTTSEEEE--SSCG
T ss_pred EEEEEEcCCchhHHHHHHHHHHHHH----hcCCeEEEEEeehHHhHHHHHHcCCCCccCCEEEEEECCCCcEEcCCCCCC
Confidence 5777777777788888888888742 1123588999999988999999986 58999864323333433 678
Q ss_pred CHHHHHHHHHh
Q 030511 123 NRFRIEAWLSQ 133 (176)
Q Consensus 123 d~deL~~~L~~ 133 (176)
+.+.|.+|+.+
T Consensus 174 ~~~~i~~Fl~d 184 (184)
T PF13848_consen 174 TPESIEKFLND 184 (184)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHhcC
Confidence 89999998863
No 238
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=90.97 E-value=0.64 Score=34.48 Aligned_cols=60 Identities=8% Similarity=0.090 Sum_probs=34.6
Q ss_pred CCceEEEEe-CCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHH---HHHhcCCccceeE
Q 030511 46 STRKLVLYS-KPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPE---WEKSYQYEIPVLA 108 (176)
Q Consensus 46 ~~~kItLYT-kpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~e---l~eky~~~VPVL~ 108 (176)
....+..|. +.||+.|......|.+... .....++.+.-|.++...+ +.++++...|++.
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~---~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~ 86 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYE---EFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLS 86 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHH---HHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEE
Confidence 334455555 6899999877666655421 0112366666666654433 4445666677654
No 239
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=90.83 E-value=0.53 Score=36.39 Aligned_cols=60 Identities=15% Similarity=0.162 Sum_probs=39.2
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCC-------CH----HHHHh-cCCccceeE
Q 030511 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT-------NP----EWEKS-YQYEIPVLA 108 (176)
Q Consensus 45 ~~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIde-------D~----el~ek-y~~~VPVL~ 108 (176)
...+-|..|..+||+ |...-..|+++.. .....++.+.-|.++. ++ ++.++ ++...|++.
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~---~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~ 92 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYE---KYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFA 92 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHH---HhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeee
Confidence 344567788999999 9988888877631 1223467666666542 22 35555 777888875
No 240
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=90.30 E-value=0.37 Score=39.52 Aligned_cols=73 Identities=22% Similarity=0.305 Sum_probs=42.0
Q ss_pred CCCCCCceEEEEe-CCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCC--HH-----------------------
Q 030511 42 SSSSSTRKLVLYS-KPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN--PE----------------------- 95 (176)
Q Consensus 42 ~~~~~~~kItLYT-kpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD--~e----------------------- 95 (176)
+......-|.+|. .-||+.|...-..|.++.. + ....+-+|++|=|+.| .+
T Consensus 28 ~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe--~-l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~ 104 (157)
T KOG2501|consen 28 SEALQGKVVGLYFSAHWCPPCRDFTPILKDFYE--E-LKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLI 104 (157)
T ss_pred hHhhCCcEEEEEEEEEECCchhhCCchHHHHHH--H-HHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHH
Confidence 3344455566654 7889999986666555421 0 0111225555555533 21
Q ss_pred --HHHhcCC-ccceeEEeccCCeEE
Q 030511 96 --WEKSYQY-EIPVLARVLSDGTEV 117 (176)
Q Consensus 96 --l~eky~~-~VPVL~i~~idGe~l 117 (176)
+.++|.. .||.+.+...||+.+
T Consensus 105 ~~l~~ky~v~~iP~l~i~~~dG~~v 129 (157)
T KOG2501|consen 105 QKLSEKYEVKGIPALVILKPDGTVV 129 (157)
T ss_pred HHHHHhcccCcCceeEEecCCCCEe
Confidence 2334554 589999888889776
No 241
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=90.30 E-value=0.83 Score=34.34 Aligned_cols=58 Identities=9% Similarity=0.098 Sum_probs=36.4
Q ss_pred CCceEEEEeCCC-CCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCH---HHHHhcCC-ccceeE
Q 030511 46 STRKLVLYSKPG-CCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP---EWEKSYQY-EIPVLA 108 (176)
Q Consensus 46 ~~~kItLYTkpg-C~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~---el~eky~~-~VPVL~ 108 (176)
..+.|..|...| |+.|......|.+... +..++.+--|+++... +|.++++. .+|++.
T Consensus 26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~-----~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~ 88 (143)
T cd03014 26 GKVKVISVFPSIDTPVCATQTKRFNKEAA-----KLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLS 88 (143)
T ss_pred CCeEEEEEEcCCCCCcCHHHHHHHHHHHH-----hcCCCEEEEEECCCHHHHHHHHHhcCCCCceEee
Confidence 334555556656 7999999999988742 2347888888876432 35555553 455443
No 242
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=90.14 E-value=0.64 Score=34.40 Aligned_cols=61 Identities=8% Similarity=0.108 Sum_probs=36.6
Q ss_pred CCCceEEEEe-CCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCH---HHHHhc-CCccceeE
Q 030511 45 SSTRKLVLYS-KPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP---EWEKSY-QYEIPVLA 108 (176)
Q Consensus 45 ~~~~kItLYT-kpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~---el~eky-~~~VPVL~ 108 (176)
...+.|.+|. ..||+.|......|.++.. + ....++.+.-|..+... .+.+++ +...|++.
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~--~-~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~ 86 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAE--E-FAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLS 86 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHH--H-HHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEE
Confidence 3444555555 7899999988777766531 0 11236777777765432 345556 55667664
No 243
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.04 E-value=0.31 Score=38.81 Aligned_cols=50 Identities=18% Similarity=0.332 Sum_probs=35.7
Q ss_pred CCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHH-------hcCC--ccceeE
Q 030511 55 KPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEK-------SYQY--EIPVLA 108 (176)
Q Consensus 55 kpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~e-------ky~~--~VPVL~ 108 (176)
++|||.|..|+.++.+... ..-.+..|..+++.+-+.|.. ..+. .||+|.
T Consensus 42 qSWCPdCV~AEPvi~~alk----~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLl 100 (128)
T KOG3425|consen 42 QSWCPDCVAAEPVINEALK----HAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLL 100 (128)
T ss_pred CcCCchHHHhhHHHHHHHH----hCCCceEEEEEEecCCCcccCCCCccccCCCceeecceee
Confidence 5799999999999988642 122367788889887666554 3343 489987
No 244
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=89.83 E-value=0.51 Score=31.75 Aligned_cols=38 Identities=18% Similarity=0.303 Sum_probs=27.3
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcC
Q 030511 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT 91 (176)
Q Consensus 50 ItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDId 91 (176)
|++|+.+.||+|..+.+.|++... ....++.++.+.+.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~----~~~~~~~~~~~~~~ 38 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLY----ADDGGVRVVYRPFP 38 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHh----hcCCcEEEEEeccc
Confidence 578999999999999999998631 11235666655543
No 245
>PRK09301 circadian clock protein KaiB; Provisional
Probab=89.72 E-value=1.6 Score=33.60 Aligned_cols=86 Identities=20% Similarity=0.155 Sum_probs=55.8
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCeEEEeccCCHH
Q 030511 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVLMACINRF 125 (176)
Q Consensus 47 ~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe~l~~~~fd~d 125 (176)
.-.+.+|-...=+.-..+-+-|.++++ .... ..+++++|||.++|++++.++. -+|+|+.....-..-..|.+ .
T Consensus 6 ~~~LrLyVag~tp~S~~ai~nL~~icE--~~l~-g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~P~rriiGDl--s 80 (103)
T PRK09301 6 TYILKLYVAGNTPNSVRALKTLKNILE--TEFK-GVYALKVIDVLKNPQLAEEDKILATPTLAKILPPPVRKIIGDL--S 80 (103)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHH--HhcC-CceEEEEEEcccCHhHHhHCCeEEecHHhhcCCCCcceeeccc--c
Confidence 446888888888888888877777652 1112 2489999999999999999997 58998743222222222333 3
Q ss_pred HHHHHHHhCCch
Q 030511 126 RIEAWLSQMSLD 137 (176)
Q Consensus 126 eL~~~L~~~~l~ 137 (176)
+..+.|...++.
T Consensus 81 d~~kVL~~L~l~ 92 (103)
T PRK09301 81 DREKVLIGLDLL 92 (103)
T ss_pred cHHHHHHhcCCC
Confidence 344555555543
No 246
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=89.15 E-value=1.4 Score=32.94 Aligned_cols=58 Identities=19% Similarity=0.152 Sum_probs=44.0
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceeEE
Q 030511 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLAR 109 (176)
Q Consensus 49 kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~-~VPVL~i 109 (176)
.+.+|-...=+....+-+-|.++++ ..... .+++++|||.++|++++.++. -.|+|+.
T Consensus 5 ~LrLyvag~~p~S~~ai~nl~~i~e--~~l~g-~y~LeVIDv~~qP~lAE~~~IvATPtLIK 63 (87)
T TIGR02654 5 VLKLYVAGNTPNSVRALKTLKNILE--TEFQG-VYALKVIDVLKNPQLAEEDKILATPTLSK 63 (87)
T ss_pred EEEEEEeCCCchHHHHHHHHHHHHH--HhcCC-ceEEEEEEcccCHhHHhHCCEEEecHHhh
Confidence 4677887777788887777777652 11122 389999999999999999997 5799873
No 247
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=88.93 E-value=1.7 Score=37.62 Aligned_cols=63 Identities=25% Similarity=0.377 Sum_probs=48.8
Q ss_pred CCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcC--CccceeEEeccCCeEEEeccCCHHHHHHHHHhC
Q 030511 57 GCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQ--YEIPVLARVLSDGTEVLMACINRFRIEAWLSQM 134 (176)
Q Consensus 57 gC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~--~~VPVL~i~~idGe~l~~~~fd~deL~~~L~~~ 134 (176)
.|++|..+-..|.... ..+.+.-||+...|+|+.... -.+|+|. .||+.+ -|-++|..+|++.
T Consensus 20 dcpf~qr~~m~L~~k~--------~~f~vttVd~~~kp~~f~~~sp~~~~P~l~---~d~~~~----tDs~~Ie~~Lee~ 84 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKG--------VPFKVTTVDLSRKPEWFLDISPGGKPPVLK---FDEKWV----TDSDKIEEFLEEK 84 (221)
T ss_pred CChhHHHHHHHHHHcC--------CCceEEEeecCCCcHHHHhhCCCCCCCeEE---eCCcee----ccHHHHHHHHHHh
Confidence 4999999998888541 266778888888899997764 4699998 688654 5888999988763
No 248
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=87.58 E-value=1.5 Score=33.79 Aligned_cols=43 Identities=19% Similarity=0.291 Sum_probs=32.3
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcC
Q 030511 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT 91 (176)
Q Consensus 45 ~~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDId 91 (176)
....+|+.|+.+.||+|..+...+.+... ....++.|+.+.+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~----~~~~~v~~~~~~~~ 56 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVK----KLPKDVKFEKVPVV 56 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHH----hCCCCceEEEcCCc
Confidence 67789999999999999999999987631 11125666666654
No 249
>PTZ00057 glutathione s-transferase; Provisional
Probab=87.18 E-value=6 Score=31.85 Aligned_cols=69 Identities=14% Similarity=0.262 Sum_probs=48.3
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCH-HHHH--hc-----C-C-ccceeEEeccCCeEEE
Q 030511 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP-EWEK--SY-----Q-Y-EIPVLARVLSDGTEVL 118 (176)
Q Consensus 49 kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~-el~e--ky-----~-~-~VPVL~i~~idGe~l~ 118 (176)
+++||+.+..+.|+.++-.|+.+ |++|+.+.+++.. ++.+ ++ . . .||+|. .||..+.
T Consensus 4 ~~~L~y~~~~~~~~~vrl~L~~~----------gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~---~~~~~l~ 70 (205)
T PTZ00057 4 EIVLYYFDARGKAELIRLIFAYL----------GIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILE---MDNIIFA 70 (205)
T ss_pred ceEEEecCCCcchHHHHHHHHHc----------CCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEE---ECCEEEe
Confidence 48999998999999999999886 8999999886432 3221 11 1 2 599998 6776543
Q ss_pred eccCCHHHHHHHHHhC
Q 030511 119 MACINRFRIEAWLSQM 134 (176)
Q Consensus 119 ~~~fd~deL~~~L~~~ 134 (176)
....|..+|.+.
T Consensus 71 ----eS~AI~~YLa~~ 82 (205)
T PTZ00057 71 ----QSQAIVRYLSKK 82 (205)
T ss_pred ----cHHHHHHHHHHH
Confidence 455566666544
No 250
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=86.74 E-value=2.1 Score=31.76 Aligned_cols=61 Identities=20% Similarity=0.265 Sum_probs=39.0
Q ss_pred CCCceEEEEeCCCCCc-hHHHHHHHHHHhccCCCCCCC---CcceEEEEcCC---CHH----HHHhcCCccceeE
Q 030511 45 SSTRKLVLYSKPGCCL-CDGLKEKLQAAFLLSGPDSLH---DVDLQVRDITT---NPE----WEKSYQYEIPVLA 108 (176)
Q Consensus 45 ~~~~kItLYTkpgC~l-Ce~aKe~Le~l~~~~~~~~~~---gie~eeIDIde---D~e----l~eky~~~VPVL~ 108 (176)
.....|..|..+||+. |......|+++.. ..... ++.+.-|.+|. +++ +.++++...|.+.
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~---~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~~~~~~~~~~l~ 92 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALK---QLGADGGDDVQVVFISVDPERDTPEVLKAYAKAFGPGWIGLT 92 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHH---HhhHhhcCceEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEE
Confidence 3456788889999997 9988888877531 01222 37777777763 233 3445565666665
No 251
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=85.88 E-value=5.1 Score=31.51 Aligned_cols=41 Identities=2% Similarity=-0.044 Sum_probs=24.6
Q ss_pred ceEEEEe-CCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcC
Q 030511 48 RKLVLYS-KPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT 91 (176)
Q Consensus 48 ~kItLYT-kpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDId 91 (176)
..|..|. ..||+.|......|.++.. .....++.+..|.+|
T Consensus 31 ~vvl~F~~~~~c~~C~~~l~~l~~~~~---~~~~~~v~vv~Is~d 72 (173)
T cd03015 31 WVVLFFYPLDFTFVCPTEIIAFSDRYE---EFKKLNAEVLGVSTD 72 (173)
T ss_pred EEEEEEECCCCCCcCHHHHHHHHHHHH---HHHHCCCEEEEEecC
Confidence 3455555 7899999998777766421 011235655555554
No 252
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=85.85 E-value=2.4 Score=37.86 Aligned_cols=90 Identities=18% Similarity=0.196 Sum_probs=60.6
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCCc-cceeEEeccCCeE--EEe-cc
Q 030511 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYE-IPVLARVLSDGTE--VLM-AC 121 (176)
Q Consensus 46 ~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~~-VPVL~i~~idGe~--l~~-~~ 121 (176)
....++.|..|||+.|..+....+++.. +.....++.+-.+|.+.+.....+++.. -|++.. +.+|.. ... +.
T Consensus 162 ~~~~lv~f~aPwc~~ck~l~~~~~~~a~--~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~-f~~~~~~~~~~~~~ 238 (383)
T KOG0191|consen 162 DADWLVEFYAPWCGHCKKLAPEWEKLAK--LLKSKENVELGKIDATVHKSLASRLEVRGYPTLKL-FPPGEEDIYYYSGL 238 (383)
T ss_pred CcceEEEEeccccHHhhhcChHHHHHHH--HhccCcceEEEeeccchHHHHhhhhcccCCceEEE-ecCCCccccccccc
Confidence 4456888999999999999888888641 0011235666667776677788888874 688853 344444 111 45
Q ss_pred CCHHHHHHHHHhCCchh
Q 030511 122 INRFRIEAWLSQMSLDC 138 (176)
Q Consensus 122 fd~deL~~~L~~~~l~~ 138 (176)
-+.+.|..++.+..-+.
T Consensus 239 R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 239 RDSDSIVSFVEKKERRN 255 (383)
T ss_pred ccHHHHHHHHHhhcCCC
Confidence 67778888887766664
No 253
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=85.49 E-value=3.2 Score=35.12 Aligned_cols=73 Identities=19% Similarity=0.267 Sum_probs=52.3
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHH---HHHhcCC-ccceeEEeccCCeEEEeccC
Q 030511 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPE---WEKSYQY-EIPVLARVLSDGTEVLMACI 122 (176)
Q Consensus 47 ~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~e---l~eky~~-~VPVL~i~~idGe~l~~~~f 122 (176)
|+..+++.-+..++|+-++-.+.-. +++|++..|+..+. +..+.-+ .+||+- +||..+.
T Consensus 1 m~~ykL~Yf~~RG~ae~iR~lf~~a----------~v~fEd~r~~~~~~w~~~K~~~pfgqlP~l~---vDg~~i~---- 63 (206)
T KOG1695|consen 1 MPPYKLTYFNIRGLAEPIRLLFAYA----------GVSFEDKRITMEDAWEELKDKMPFGQLPVLE---VDGKKLV---- 63 (206)
T ss_pred CCceEEEecCcchhHHHHHHHHHhc----------CCCcceeeeccccchhhhcccCCCCCCCEEe---ECCEeec----
Confidence 4567888899999999999998765 89999999996653 3344444 699998 8998764
Q ss_pred CHHHHHHHH-HhCCc
Q 030511 123 NRFRIEAWL-SQMSL 136 (176)
Q Consensus 123 d~deL~~~L-~~~~l 136 (176)
-...|.+.| ++.|+
T Consensus 64 QS~AI~RyLArk~gl 78 (206)
T KOG1695|consen 64 QSRAILRYLARKFGL 78 (206)
T ss_pred cHHHHHHHHHHHhCc
Confidence 234444544 33444
No 254
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=85.19 E-value=2 Score=39.61 Aligned_cols=96 Identities=11% Similarity=0.090 Sum_probs=63.5
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCC--cceEEEEcCCCHHHHHhcCC-ccceeEEeccCCeEEE-ec
Q 030511 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHD--VDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVL-MA 120 (176)
Q Consensus 45 ~~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~g--ie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe~l~-~~ 120 (176)
...+.++-|..|||..|+++..+.++.. .+..+.| +.+-..|-+.-+....++|. .-|+|.. +.+|..+. .|
T Consensus 42 dddiW~VdFYAPWC~HCKkLePiWdeVG---~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~-~kgd~a~dYRG 117 (468)
T KOG4277|consen 42 DDDIWFVDFYAPWCAHCKKLEPIWDEVG---HELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKF-FKGDHAIDYRG 117 (468)
T ss_pred cCCeEEEEeechhhhhcccccchhHHhC---cchhhcCCceeecccccccchhhHhhhccCCCceEEE-ecCCeeeecCC
Confidence 3456788899999999999999998862 1122223 34445666677899999997 5899873 24554443 47
Q ss_pred cCCHHHHHHHHHh--CCchhHHHHhh
Q 030511 121 CINRFRIEAWLSQ--MSLDCVMAYQQ 144 (176)
Q Consensus 121 ~fd~deL~~~L~~--~~l~~~~~~~~ 144 (176)
+-.++.|.++-.+ +.+.+.+.-.|
T Consensus 118 ~R~Kd~iieFAhR~a~aiI~pi~enQ 143 (468)
T KOG4277|consen 118 GREKDAIIEFAHRCAAAIIEPINENQ 143 (468)
T ss_pred CccHHHHHHHHHhcccceeeecChhH
Confidence 7778888777543 33444444433
No 255
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=85.05 E-value=6 Score=36.74 Aligned_cols=72 Identities=14% Similarity=0.090 Sum_probs=49.8
Q ss_pred CCCCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCCccceeEEeccCC---eEEEec
Q 030511 44 SSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDG---TEVLMA 120 (176)
Q Consensus 44 ~~~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~~VPVL~i~~idG---e~l~~~ 120 (176)
...+.+|.+|+. .|..|++++++|+.+..++ ..+.+++.|.+ ...|.+.+. .+| ...|+|
T Consensus 17 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~s-----~~i~~~~~~~~----------~~~p~~~~~-~~~~~~~i~f~g 79 (517)
T PRK15317 17 LERPIELVASLD-DSEKSAELKELLEEIASLS-----DKITVEEDSLD----------VRKPSFSIT-RPGEDTGVRFAG 79 (517)
T ss_pred CCCCEEEEEEeC-CCchHHHHHHHHHHHHHhC-----CceEEEEccCC----------CCCCEEEEE-cCCccceEEEEe
Confidence 455667888988 7999999999999986432 36777765532 247887643 344 355666
Q ss_pred cCCHHHHHHHHH
Q 030511 121 CINRFRIEAWLS 132 (176)
Q Consensus 121 ~fd~deL~~~L~ 132 (176)
-+.-.|+..++.
T Consensus 80 ~P~g~Ef~s~i~ 91 (517)
T PRK15317 80 IPMGHEFTSLVL 91 (517)
T ss_pred cCccHHHHHHHH
Confidence 677777777653
No 256
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=84.78 E-value=2.5 Score=37.21 Aligned_cols=77 Identities=17% Similarity=0.255 Sum_probs=50.3
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCc---ceEEEEcC-----CC----HH-------HHHhcCC-c--cc
Q 030511 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDV---DLQVRDIT-----TN----PE-------WEKSYQY-E--IP 105 (176)
Q Consensus 48 ~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gi---e~eeIDId-----eD----~e-------l~eky~~-~--VP 105 (176)
.-|+|||..||.-|--+-+.|.++. .+.++ .|+ ||-- +| ++ +...++. + .|
T Consensus 43 ~VVELfTSQGCsSCPPAd~~l~k~a------~~~~vlALsyh-VdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTP 115 (261)
T COG5429 43 GVVELFTSQGCSSCPPADANLAKLA------DDPGVLALSYH-VDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTP 115 (261)
T ss_pred eEEEEeecCCcCCCChHHHHHHHhc------cCCCEEEEEEe-ecccccCCccccccchhhhHHHHHHHHhhccCCCCCc
Confidence 3699999999999999999999974 22232 232 2222 12 11 2233333 3 48
Q ss_pred eeEEeccCCeEEEeccCCHHHHHHHHHhCC
Q 030511 106 VLARVLSDGTEVLMACINRFRIEAWLSQMS 135 (176)
Q Consensus 106 VL~i~~idGe~l~~~~fd~deL~~~L~~~~ 135 (176)
..+ ++|.... .+=|..+|..+|..++
T Consensus 116 Qav---vnGr~~~-~Gad~~~i~~~i~a~~ 141 (261)
T COG5429 116 QAV---VNGRVHA-NGADPGAIEDAIAAMA 141 (261)
T ss_pred hhe---eechhhh-cCCCHHHHHHHHHHhh
Confidence 888 7897643 4678888888887765
No 257
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=84.45 E-value=4.2 Score=33.44 Aligned_cols=121 Identities=15% Similarity=0.180 Sum_probs=67.9
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCC-------C-H---HHHH-hcCCccceeEEecc
Q 030511 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT-------N-P---EWEK-SYQYEIPVLARVLS 112 (176)
Q Consensus 45 ~~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIde-------D-~---el~e-ky~~~VPVL~i~~i 112 (176)
...+-|+.++..||++|... ..|+++.. .....|+.+--+..++ + + ++.+ +|+...|++-...+
T Consensus 24 ~GKvvLVvf~AS~C~~~~q~-~~L~~L~~---~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~~Fpv~~k~dv 99 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQY-EQLENIQK---AWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGVTFPMFSKIEV 99 (183)
T ss_pred CCCEEEEEEEeCCCCCcHHH-HHHHHHHH---HHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCCCceeEEEEcc
Confidence 44567899999999999753 35555421 0223366666665531 2 2 2443 68888999853235
Q ss_pred CCeEEEeccCCHHHHHHHHHhCCc-----------hhHHHH------------hhhhhhc--ccccCCCCCCCCCHHH--
Q 030511 113 DGTEVLMACINRFRIEAWLSQMSL-----------DCVMAY------------QQLSFLN--IVEALPRLSPRIGVEL-- 165 (176)
Q Consensus 113 dGe~l~~~~fd~deL~~~L~~~~l-----------~~~~~~------------~~~~~~~--~~~~~~~~~~~~~~~~-- 165 (176)
+|+ +...|.++|....= +..+.. ---.|+= --...=|.+|+...+.
T Consensus 100 nG~-------~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv~r~~~~~~p~~~~ 172 (183)
T PRK10606 100 NGE-------GRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVIQRFSPDMTPEDPI 172 (183)
T ss_pred CCC-------CCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcEEEEECCCCCCCHHH
Confidence 554 34456777764221 111100 0001111 0123567888887777
Q ss_pred HHHHHHHHhcC
Q 030511 166 IQKKIAAALRQ 176 (176)
Q Consensus 166 ~~~~~~~~~~~ 176 (176)
|.+.|.++|+|
T Consensus 173 i~~~i~~~l~~ 183 (183)
T PRK10606 173 VMESIKLALAK 183 (183)
T ss_pred HHHHHHHHhcC
Confidence 99999888764
No 258
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=84.26 E-value=7 Score=36.33 Aligned_cols=73 Identities=18% Similarity=0.132 Sum_probs=49.9
Q ss_pred CCCCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCCccceeEEeccCCe---EEEec
Q 030511 44 SSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGT---EVLMA 120 (176)
Q Consensus 44 ~~~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~~VPVL~i~~idGe---~l~~~ 120 (176)
...+..|.+|+. .|.+|++++++|+.+..++ ..+.+++.|.+++ ..|.+.+. .+|+ ..|+|
T Consensus 17 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~s-----~ki~~~~~~~~~~---------~~p~~~~~-~~~~~~~i~f~g 80 (515)
T TIGR03140 17 LENPVTLVLSAG-SHEKSKELLELLDEIASLS-----DKISLTQNTADTL---------RKPSFTIL-RDGADTGIRFAG 80 (515)
T ss_pred cCCCEEEEEEeC-CCchhHHHHHHHHHHHHhC-----CCeEEEEecCCcC---------CCCeEEEe-cCCcccceEEEe
Confidence 345667888888 7999999999999986432 3678877775432 45887642 4554 45556
Q ss_pred cCCHHHHHHHHH
Q 030511 121 CINRFRIEAWLS 132 (176)
Q Consensus 121 ~fd~deL~~~L~ 132 (176)
-+.-.|+..++.
T Consensus 81 ~P~g~Ef~s~i~ 92 (515)
T TIGR03140 81 IPGGHEFTSLVL 92 (515)
T ss_pred cCCcHHHHHHHH
Confidence 676677766653
No 259
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=84.15 E-value=4.3 Score=28.98 Aligned_cols=58 Identities=12% Similarity=0.122 Sum_probs=37.3
Q ss_pred CCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCCccceeEEeccCCeEEEeccCCHHHHHHHHHh
Q 030511 57 GCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGTEVLMACINRFRIEAWLSQ 133 (176)
Q Consensus 57 gC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~~VPVL~i~~idGe~l~~~~fd~deL~~~L~~ 133 (176)
..+.|-++.-.|+.. |++|+.+|....+.... .-.||+|. .||+.+. +-..|..+|.+
T Consensus 16 ~~~~~~kv~~~L~el----------glpye~~~~~~~~~~~P--~GkVP~L~---~dg~vI~----eS~aIl~yL~~ 73 (74)
T cd03079 16 DNASCLAVQTFLKMC----------NLPFNVRCRANAEFMSP--SGKVPFIR---VGNQIVS----EFGPIVQFVEA 73 (74)
T ss_pred CCCCHHHHHHHHHHc----------CCCcEEEecCCccccCC--CCcccEEE---ECCEEEe----CHHHHHHHHhc
Confidence 455567888888876 89999887643111110 13599998 6888664 55566666643
No 260
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=83.91 E-value=1.3 Score=33.45 Aligned_cols=48 Identities=13% Similarity=0.187 Sum_probs=33.3
Q ss_pred CCCCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCC
Q 030511 44 SSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN 93 (176)
Q Consensus 44 ~~~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD 93 (176)
+.....|++|....||+|....+.+.++.. .-.....+.|..+++-.+
T Consensus 10 ~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~--~~i~~~~v~~~~~~~~~~ 57 (162)
T PF13462_consen 10 PDAPITVTEFFDFQCPHCAKFHEELEKLLK--KYIDPGKVKFVFRPVPLD 57 (162)
T ss_dssp TTTSEEEEEEE-TTSHHHHHHHHHHHHHHH--HHTTTTTEEEEEEESSSS
T ss_pred CCCCeEEEEEECCCCHhHHHHHHHHhhhhh--hccCCCceEEEEEEcccc
Confidence 445778999999999999999888866431 101234678888888544
No 261
>PRK13190 putative peroxiredoxin; Provisional
Probab=83.68 E-value=9.4 Score=31.34 Aligned_cols=80 Identities=10% Similarity=-0.024 Sum_probs=46.3
Q ss_pred EEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcC---------------------------CCHHHHHhcCC--
Q 030511 52 LYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT---------------------------TNPEWEKSYQY-- 102 (176)
Q Consensus 52 LYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDId---------------------------eD~el~eky~~-- 102 (176)
.|...||+.|..-...|.+... .....++.+--+.+| .+.++.+.||.
T Consensus 34 ~~p~~~cp~C~~El~~l~~~~~---~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~ 110 (202)
T PRK13190 34 SHPADFTPVCTTEFIAFSRRYE---DFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREYNLID 110 (202)
T ss_pred EEcCCCCCCCHHHHHHHHHHHH---HHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHcCCcc
Confidence 4779999999977666654310 001123444344333 23345555664
Q ss_pred -----ccceeEEeccCCeEEEec------cCCHHHHHHHHHhC
Q 030511 103 -----EIPVLARVLSDGTEVLMA------CINRFRIEAWLSQM 134 (176)
Q Consensus 103 -----~VPVL~i~~idGe~l~~~------~fd~deL~~~L~~~ 134 (176)
.+|.+++...||+....+ +-+.+++.+.|++.
T Consensus 111 ~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l 153 (202)
T PRK13190 111 ENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKAL 153 (202)
T ss_pred ccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 368887665677754332 45788888877753
No 262
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=81.87 E-value=2.1 Score=32.75 Aligned_cols=60 Identities=12% Similarity=0.024 Sum_probs=33.6
Q ss_pred CCceEEEEeC-CCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHH---HHHhcCCccceeE
Q 030511 46 STRKLVLYSK-PGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPE---WEKSYQYEIPVLA 108 (176)
Q Consensus 46 ~~~kItLYTk-pgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~e---l~eky~~~VPVL~ 108 (176)
..+.|..|.. .||+.|......|.+... .....++.+.-|.+|..++ +.++++...|++.
T Consensus 30 gk~~ll~f~~~~~~p~C~~~~~~l~~~~~---~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~ 93 (154)
T PRK09437 30 GQRVLVYFYPKAMTPGCTVQACGLRDNMD---ELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLS 93 (154)
T ss_pred CCCEEEEEECCCCCCchHHHHHHHHHHHH---HHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEE
Confidence 3445666664 578889876666654421 0122367776666664433 4455566666554
No 263
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=81.68 E-value=15 Score=30.15 Aligned_cols=85 Identities=6% Similarity=0.014 Sum_probs=46.5
Q ss_pred eEEEEe-CCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEc-------------------------CCCHHHHHhcCC
Q 030511 49 KLVLYS-KPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDI-------------------------TTNPEWEKSYQY 102 (176)
Q Consensus 49 kItLYT-kpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDI-------------------------deD~el~eky~~ 102 (176)
.|..|. ..||+-|..--..|.+... .....++.+--|.+ |.+.++.++||.
T Consensus 34 vvL~F~P~~~~p~C~~el~~l~~~~~---~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv 110 (187)
T PRK10382 34 SVFFFYPADFTFVCPTELGDVADHYE---ELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDN 110 (187)
T ss_pred EEEEEECCCCCCcCHHHHHHHHHHHH---HHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcCC
Confidence 344444 9999999986555544320 01111332222222 334456667774
Q ss_pred -----cc--ceeEEeccCCeEEEe------ccCCHHHHHHHHHhCCc
Q 030511 103 -----EI--PVLARVLSDGTEVLM------ACINRFRIEAWLSQMSL 136 (176)
Q Consensus 103 -----~V--PVL~i~~idGe~l~~------~~fd~deL~~~L~~~~l 136 (176)
.+ |..++...+|+.... .+.+.+++.+.|++...
T Consensus 111 ~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq~ 157 (187)
T PRK10382 111 MREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQY 157 (187)
T ss_pred CcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhhh
Confidence 34 888766567775433 22467777777765543
No 264
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=81.61 E-value=0.51 Score=34.64 Aligned_cols=54 Identities=20% Similarity=0.182 Sum_probs=38.8
Q ss_pred EEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceeE
Q 030511 52 LYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLA 108 (176)
Q Consensus 52 LYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~-~VPVL~ 108 (176)
||....=+-.+.+.+.++.++. ..-...+++++|||.++|++++.++. -.|+|+
T Consensus 2 LyV~g~~~~s~~a~~~l~~l~~---~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 2 LYVAGRTPSSERAIENLRRLCE---EYLGGRYELEVIDVLEQPELAEEDRIVATPTLI 56 (82)
T ss_dssp EEESSBHHHHHHHHHHHHHHHH---CHCTTTEEEEEEETTTSHSHHTTTEEECHHHHH
T ss_pred eEECCCChHHHHHHHHHHHHHH---hhCCCcEEEEEEEcccCHhHHhHCCeeecceEe
Confidence 3444444455677777777752 11234789999999999999999987 579987
No 265
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=81.08 E-value=5.1 Score=31.69 Aligned_cols=58 Identities=12% Similarity=0.083 Sum_probs=35.1
Q ss_pred CCceEEEEeCCC-CCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCC---HHHHHhcCCc-cceeE
Q 030511 46 STRKLVLYSKPG-CCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN---PEWEKSYQYE-IPVLA 108 (176)
Q Consensus 46 ~~~kItLYTkpg-C~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD---~el~eky~~~-VPVL~ 108 (176)
....|..|...| |+.|..-...|.+... +..++.+.-|.+|.. .+|.++++.. +|++.
T Consensus 44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~-----~~~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~ls 106 (167)
T PRK00522 44 GKRKVLNIFPSIDTGVCATSVRKFNQEAA-----ELDNTVVLCISADLPFAQKRFCGAEGLENVITLS 106 (167)
T ss_pred CCEEEEEEEcCCCCCccHHHHHHHHHHHH-----HcCCcEEEEEeCCCHHHHHHHHHhCCCCCceEee
Confidence 334566666777 9999998888877631 113566666666532 2366666654 45443
No 266
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=81.07 E-value=9.5 Score=31.21 Aligned_cols=39 Identities=10% Similarity=-0.067 Sum_probs=23.6
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcC
Q 030511 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT 91 (176)
Q Consensus 50 ItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDId 91 (176)
+..|...||+.|..-...|.+... .....|+.+--+.+|
T Consensus 30 lf~~pa~~cp~C~~el~~l~~~~~---~f~~~gv~vigvS~D 68 (203)
T cd03016 30 LFSHPADFTPVCTTELGAFAKLAP---EFKKRNVKLIGLSVD 68 (203)
T ss_pred EEEecCCCCCcCHHHHHHHHHHHH---HHHHcCCEEEEEECC
Confidence 345779999999988777766421 011235555555554
No 267
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=81.04 E-value=14 Score=29.83 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=17.0
Q ss_pred ceEEEEe-CCCCCchHHHHHHHHHH
Q 030511 48 RKLVLYS-KPGCCLCDGLKEKLQAA 71 (176)
Q Consensus 48 ~kItLYT-kpgC~lCe~aKe~Le~l 71 (176)
..|..|. ..||+.|..--..|.+.
T Consensus 33 ~vvl~F~p~~~cp~C~~el~~l~~~ 57 (187)
T TIGR03137 33 WSVFFFYPADFTFVCPTELEDLADK 57 (187)
T ss_pred EEEEEEECCCcCCcCHHHHHHHHHH
Confidence 4455555 89999999876666543
No 268
>PRK10542 glutathionine S-transferase; Provisional
Probab=79.95 E-value=7.3 Score=30.62 Aligned_cols=67 Identities=19% Similarity=0.287 Sum_probs=36.9
Q ss_pred EEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCC--C----HHHHHhcCC--ccceeEEeccCCeEEEeccC
Q 030511 51 VLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT--N----PEWEKSYQY--EIPVLARVLSDGTEVLMACI 122 (176)
Q Consensus 51 tLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIde--D----~el~eky~~--~VPVL~i~~idGe~l~~~~f 122 (176)
+||+.++ ..+..+.-.|+.+ |++|+.+.|+- . .+.+.+.+- .||||.. .||..+ +
T Consensus 2 ~l~~~~~-s~~~~~~~~L~~~----------gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~--~~g~~l----~ 64 (201)
T PRK10542 2 KLFYKPG-ACSLASHITLRES----------GLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLL--DDGTLL----T 64 (201)
T ss_pred ceeeccc-HHHHHHHHHHHHc----------CCCceEEEeecccccccCChHHHHhCcCCCCCeEEe--CCCcEe----e
Confidence 5676543 2233444455554 77777666552 1 133444443 6999972 355544 3
Q ss_pred CHHHHHHHHHhC
Q 030511 123 NRFRIEAWLSQM 134 (176)
Q Consensus 123 d~deL~~~L~~~ 134 (176)
+...|.++|.+.
T Consensus 65 eS~aI~~YL~~~ 76 (201)
T PRK10542 65 EGVAIMQYLADS 76 (201)
T ss_pred cHHHHHHHHHHh
Confidence 666777777543
No 269
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=79.23 E-value=14 Score=30.79 Aligned_cols=69 Identities=19% Similarity=0.353 Sum_probs=47.7
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcC--C----CHHHHHhcCC-ccceeEEeccCCeEEEec
Q 030511 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--T----NPEWEKSYQY-EIPVLARVLSDGTEVLMA 120 (176)
Q Consensus 48 ~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDId--e----D~el~eky~~-~VPVL~i~~idGe~l~~~ 120 (176)
+++++|+.++=+.|..+.-.+..+ |++|+.+.|+ . -|++.+..-. .||+|. .+|-.+
T Consensus 1 ~~~~ly~~~~s~~~r~vl~~~~~~----------~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~---d~~~~l--- 64 (226)
T KOG0867|consen 1 MKLKLYGHLGSPPARAVLIAAKEL----------GLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALE---DGGLTL--- 64 (226)
T ss_pred CCceEeecCCCcchHHHHHHHHHc----------CCceeEEEeeccccccCCHHHHhcCcCCCCCeEe---cCCeEE---
Confidence 357899999999999999988876 7777777555 2 2456655544 799998 344332
Q ss_pred cCCHHHHHHHHHh
Q 030511 121 CINRFRIEAWLSQ 133 (176)
Q Consensus 121 ~fd~deL~~~L~~ 133 (176)
++...|...|..
T Consensus 65 -~eS~AI~~Yl~~ 76 (226)
T KOG0867|consen 65 -WESHAILRYLAE 76 (226)
T ss_pred -eeHHHHHHHHHH
Confidence 355666666654
No 270
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=78.36 E-value=18 Score=25.29 Aligned_cols=57 Identities=9% Similarity=0.229 Sum_probs=32.3
Q ss_pred CchHHHHHHHHHHhccCCCCCCCCcceEEEEcC--CC-----HHHHH-hc--C---CccceeEEeccCCeEEEeccCCHH
Q 030511 59 CLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--TN-----PEWEK-SY--Q---YEIPVLARVLSDGTEVLMACINRF 125 (176)
Q Consensus 59 ~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDId--eD-----~el~e-ky--~---~~VPVL~i~~idGe~l~~~~fd~d 125 (176)
+.|..+.-.|+.. |++|+.+.|+ ++ +++.. .+ + -.||+|. .||..+. ...
T Consensus 10 ~~~~~~~~~l~~~----------gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~---~~g~~l~----ES~ 72 (82)
T cd03075 10 GLAQPIRLLLEYT----------GEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYI---DGDVKLT----QSN 72 (82)
T ss_pred cccHHHHHHHHHc----------CCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEE---ECCEEEe----ehH
Confidence 4566777777654 6666666655 31 23332 11 1 2699998 5775543 445
Q ss_pred HHHHHHH
Q 030511 126 RIEAWLS 132 (176)
Q Consensus 126 eL~~~L~ 132 (176)
.|..+|.
T Consensus 73 AIl~YLa 79 (82)
T cd03075 73 AILRYIA 79 (82)
T ss_pred HHHHHHh
Confidence 5555554
No 271
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=78.33 E-value=23 Score=25.72 Aligned_cols=70 Identities=21% Similarity=0.233 Sum_probs=45.8
Q ss_pred EeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCH--HHHHhcCCc------cceeEEeccCCeEEEeccCCH
Q 030511 53 YSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP--EWEKSYQYE------IPVLARVLSDGTEVLMACINR 124 (176)
Q Consensus 53 YTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~--el~eky~~~------VPVL~i~~idGe~l~~~~fd~ 124 (176)
|--..|++|......+.+.. .+-.++.+|+..++ ++.+.++.+ .-++. .||+.+ -.+.
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d--------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~g~~~---~~G~ 67 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRD--------RGGRLRFVDIQSEPDQALLASYGISPEDADSRLHLI---DDGERV---YRGS 67 (114)
T ss_pred EECCCCHhHHHHHHHHHhcC--------CCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEe---cCCCEE---EEcH
Confidence 45678999999999998861 23468889995433 345666642 22223 577633 2366
Q ss_pred HHHHHHHHhCCc
Q 030511 125 FRIEAWLSQMSL 136 (176)
Q Consensus 125 deL~~~L~~~~l 136 (176)
+.+.+.+...+.
T Consensus 68 ~A~~~l~~~~~~ 79 (114)
T PF04134_consen 68 DAVLRLLRRLPG 79 (114)
T ss_pred HHHHHHHHHcCc
Confidence 777777777766
No 272
>PRK11752 putative S-transferase; Provisional
Probab=76.96 E-value=29 Score=29.45 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=44.1
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcC--C----CHHHHHhcCC-ccceeEEeccCC---eE
Q 030511 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--T----NPEWEKSYQY-EIPVLARVLSDG---TE 116 (176)
Q Consensus 47 ~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDId--e----D~el~eky~~-~VPVL~i~~idG---e~ 116 (176)
..-++||+.+ |+.|..+.-.|+.+.. ....+++|+.+.|+ . .+++.+.--. .||+|+. .|| ..
T Consensus 42 ~~~~~Ly~~~-s~~~~rV~i~L~e~~~----~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~--~dg~~~~~ 114 (264)
T PRK11752 42 KHPLQLYSLG-TPNGQKVTIMLEELLA----LGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLD--RSGNPPIR 114 (264)
T ss_pred CCCeEEecCC-CCchHHHHHHHHHHHh----ccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEe--CCCCCCeE
Confidence 3368999965 9999999999987410 01125556655554 2 2344433222 6999982 233 23
Q ss_pred EEeccCCHHHHHHHHHh
Q 030511 117 VLMACINRFRIEAWLSQ 133 (176)
Q Consensus 117 l~~~~fd~deL~~~L~~ 133 (176)
+ ++...|..+|.+
T Consensus 115 L----~ES~AIl~YL~~ 127 (264)
T PRK11752 115 V----FESGAILLYLAE 127 (264)
T ss_pred E----EcHHHHHHHHHH
Confidence 3 356666666654
No 273
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=75.53 E-value=2.4 Score=33.06 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=22.2
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHh
Q 030511 49 KLVLYSKPGCCLCDGLKEKLQAAF 72 (176)
Q Consensus 49 kItLYTkpgC~lCe~aKe~Le~l~ 72 (176)
+|++|+...||+|-.+...|+++.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~ 24 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLR 24 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHH
Confidence 689999999999999999998874
No 274
>PRK13599 putative peroxiredoxin; Provisional
Probab=75.50 E-value=34 Score=28.64 Aligned_cols=81 Identities=11% Similarity=-0.066 Sum_probs=46.3
Q ss_pred EEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcC---------------------------CCHHHHHhcCC-
Q 030511 51 VLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT---------------------------TNPEWEKSYQY- 102 (176)
Q Consensus 51 tLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDId---------------------------eD~el~eky~~- 102 (176)
..|.+.||+.|..--..|.+... ..+..|+.+--+.+| .+.++.+.||.
T Consensus 34 ~~~pa~~tpvCt~El~~l~~~~~---~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~~ 110 (215)
T PRK13599 34 FSHPADFTPVCTTEFVEFARKAN---DFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGMI 110 (215)
T ss_pred EEeCCCCCCcCHHHHHHHHHHHH---HHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHcCCC
Confidence 45669999999986665554320 011123433333333 22345555664
Q ss_pred -------ccceeEEeccCCeEEEec------cCCHHHHHHHHHhC
Q 030511 103 -------EIPVLARVLSDGTEVLMA------CINRFRIEAWLSQM 134 (176)
Q Consensus 103 -------~VPVL~i~~idGe~l~~~------~fd~deL~~~L~~~ 134 (176)
.+|.+++...||+....+ +-+.++|.++|++.
T Consensus 111 ~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 111 HPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred ccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 368888766678754332 24578888888753
No 275
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=74.72 E-value=13 Score=31.36 Aligned_cols=68 Identities=18% Similarity=0.312 Sum_probs=47.4
Q ss_pred HHHHhcCC-ccceeEEeccCCeEEEeccCCHHHHHHHHHhCCchhHHHHhhhhhhccc-ccCCCCCCCCCHHHHHHHHHH
Q 030511 95 EWEKSYQY-EIPVLARVLSDGTEVLMACINRFRIEAWLSQMSLDCVMAYQQLSFLNIV-EALPRLSPRIGVELIQKKIAA 172 (176)
Q Consensus 95 el~eky~~-~VPVL~i~~idGe~l~~~~fd~deL~~~L~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 172 (176)
.+.+.+|+ .+||+- +|+.+ |.+.+..|.+.+-+.+ +. ..++.--.+| +.+|-+||-.+.+-|.+.|..
T Consensus 89 ~lM~~~g~SQlPVi~----~~k~V--GsItE~~iv~~~le~~-e~---i~~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~ 158 (187)
T COG3620 89 NLMRDKGISQLPVIE----EDKVV--GSITENDIVRALLEGM-ES---IRSLRVREVMGEPFPTVSPDESLNVISQLLEE 158 (187)
T ss_pred HHHHHcCCccCceee----CCeee--eeecHHHHHHHHhccc-cc---hhhhhHHHHhcCCCCcCCCCCCHHHHHHHHhh
Confidence 36678898 599996 56664 6899999988875443 11 1223333444 459999999999988777653
No 276
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=74.22 E-value=7.6 Score=36.69 Aligned_cols=77 Identities=13% Similarity=0.102 Sum_probs=53.6
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcC-CccceeEEeccCCeEEEeccCCHHHH
Q 030511 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQ-YEIPVLARVLSDGTEVLMACINRFRI 127 (176)
Q Consensus 49 kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~-~~VPVL~i~~idGe~l~~~~fd~deL 127 (176)
...-|-.-.||-|..+-+.|+-... -..+|...-||=.-=++-.+.-+ ..||.++ .||+++.-|+-.-++|
T Consensus 119 ~FETy~SltC~nCPDVVQALN~msv-----lNp~I~H~~IdGa~Fq~Evear~IMaVPtvf---lnGe~fg~GRmtleei 190 (520)
T COG3634 119 HFETYFSLTCHNCPDVVQALNLMSV-----LNPRIKHTAIDGALFQDEVEARNIMAVPTVF---LNGEEFGQGRMTLEEI 190 (520)
T ss_pred eEEEEEEeeccCChHHHHHHHHHHh-----cCCCceeEEecchhhHhHHHhccceecceEE---EcchhhcccceeHHHH
Confidence 5677888999999999999876431 12245555555432233333334 4699999 8999998888888888
Q ss_pred HHHHHh
Q 030511 128 EAWLSQ 133 (176)
Q Consensus 128 ~~~L~~ 133 (176)
.+-+..
T Consensus 191 laki~~ 196 (520)
T COG3634 191 LAKIDT 196 (520)
T ss_pred HHHhcC
Confidence 877755
No 277
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=74.21 E-value=38 Score=28.57 Aligned_cols=54 Identities=15% Similarity=0.106 Sum_probs=39.5
Q ss_pred CCCCCCceEEEEeCC-----CCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHh
Q 030511 42 SSSSSTRKLVLYSKP-----GCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKS 99 (176)
Q Consensus 42 ~~~~~~~kItLYTkp-----gC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~ek 99 (176)
+.-..+.+|++|..+ .=.+=..+++.|++... ....+|.++.||.+.+++..++
T Consensus 21 ~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~----~s~g~i~v~~iDp~~~~~~~~~ 79 (271)
T PF09822_consen 21 KSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYAR----YSPGKIKVEFIDPDENPSEAEE 79 (271)
T ss_pred HhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHH----hCCCceEEEEECCCCChHHHHH
Confidence 345568899999987 56667788888888742 1222699999999888876655
No 278
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=73.73 E-value=13 Score=28.74 Aligned_cols=72 Identities=11% Similarity=0.070 Sum_probs=48.3
Q ss_pred HHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCC---ccceeEEeccCC-eEE-EeccCCHHHHHHHHHhCCch
Q 030511 63 GLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY---EIPVLARVLSDG-TEV-LMACINRFRIEAWLSQMSLD 137 (176)
Q Consensus 63 ~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~---~VPVL~i~~idG-e~l-~~~~fd~deL~~~L~~~~l~ 137 (176)
..++.|.+++ +.....++.|..+|.++.+.+.+.+|. ..|.+++...++ +.. ..+.|+.+.|.+++.+.--+
T Consensus 41 ~~~~~l~~vA---k~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~G 117 (130)
T cd02983 41 KYLEILKSVA---EKFKKKPWGWLWTEAGAQLDLEEALNIGGFGYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYG 117 (130)
T ss_pred HHHHHHHHHH---HHhcCCcEEEEEEeCcccHHHHHHcCCCccCCCEEEEEecccCccccccCccCHHHHHHHHHHHHcC
Confidence 4455555542 112223488999999998888899985 489888643443 433 34789999999999775433
No 279
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=72.07 E-value=24 Score=32.87 Aligned_cols=61 Identities=13% Similarity=0.075 Sum_probs=47.0
Q ss_pred CCCCCcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCeEEEe-ccCCHHHHHHHHHhCCchhH
Q 030511 78 DSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVLM-ACINRFRIEAWLSQMSLDCV 139 (176)
Q Consensus 78 ~~~~gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe~l~~-~~fd~deL~~~L~~~~l~~~ 139 (176)
.+..|+-+-.||+..|..+++++|. .++.|.+ +.+|+.+-+ |-++++-|..||-+.==|++
T Consensus 86 lE~~gigfg~VD~~Kd~klAKKLgv~E~~SiyV-fkd~~~IEydG~~saDtLVeFl~dl~edPV 148 (383)
T PF01216_consen 86 LEDKGIGFGMVDSKKDAKLAKKLGVEEEGSIYV-FKDGEVIEYDGERSADTLVEFLLDLLEDPV 148 (383)
T ss_dssp CGGCTEEEEEEETTTTHHHHHHHT--STTEEEE-EETTEEEEE-S--SHHHHHHHHHHHHSSSE
T ss_pred ccccCcceEEeccHHHHHHHHhcCccccCcEEE-EECCcEEEecCccCHHHHHHHHHHhcccch
Confidence 3566999999999999999999997 5888873 689988777 66999999999865433444
No 280
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=71.96 E-value=8.7 Score=35.34 Aligned_cols=95 Identities=13% Similarity=0.081 Sum_probs=65.8
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhcc-CCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCeEEE---ec
Q 030511 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLL-SGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVL---MA 120 (176)
Q Consensus 46 ~~~kItLYTkpgC~lCe~aKe~Le~l~~~-~~~~~~~gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe~l~---~~ 120 (176)
......=|+..||++-..++..+++.+.. -+...+..+-+-.||.+.+..+..+|.. .-|++.+ +.+|.... .|
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKv-frnG~~~~rEYRg 91 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKV-FRNGEMMKREYRG 91 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeee-eeccchhhhhhcc
Confidence 34456668899999999999998775310 0012223567889999999999999997 4899973 47876432 34
Q ss_pred cCCHHHHHHHHHhCCchhHHH
Q 030511 121 CINRFRIEAWLSQMSLDCVMA 141 (176)
Q Consensus 121 ~fd~deL~~~L~~~~l~~~~~ 141 (176)
-=+.+.|.+++++.--|++-.
T Consensus 92 ~RsVeaL~efi~kq~s~~i~E 112 (375)
T KOG0912|consen 92 QRSVEALIEFIEKQLSDPINE 112 (375)
T ss_pred chhHHHHHHHHHHHhccHHHH
Confidence 456677777777766665443
No 281
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=71.73 E-value=10 Score=26.37 Aligned_cols=59 Identities=22% Similarity=0.224 Sum_probs=39.8
Q ss_pred CCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCCccceeEEeccCCeEEEeccCCHHHHHHHHHhCC
Q 030511 57 GCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGTEVLMACINRFRIEAWLSQMS 135 (176)
Q Consensus 57 gC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~~VPVL~i~~idGe~l~~~~fd~deL~~~L~~~~ 135 (176)
..+.|-+++.+|+-. +++|+.+ ...|+.. . =.-.+|+|. .+|+.+. |.+.|.+.|++.+
T Consensus 15 ~sp~clk~~~~Lr~~----------~~~~~v~-~~~n~~~-s-p~gkLP~l~---~~~~~i~----d~~~Ii~~L~~~~ 73 (73)
T cd03078 15 VDPECLAVLAYLKFA----------GAPLKVV-PSNNPWR-S-PTGKLPALL---TSGTKIS----GPEKIIEYLRKQG 73 (73)
T ss_pred CCHHHHHHHHHHHcC----------CCCEEEE-ecCCCCC-C-CCCccCEEE---ECCEEec----ChHHHHHHHHHcC
Confidence 368999999999764 8888655 3344221 1 123599998 6777653 5688888887653
No 282
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=70.98 E-value=4.1 Score=31.68 Aligned_cols=34 Identities=12% Similarity=0.132 Sum_probs=26.5
Q ss_pred HHHhcCC-ccceeEEeccCCeEEEeccCCHHHHHHHHH
Q 030511 96 WEKSYQY-EIPVLARVLSDGTEVLMACINRFRIEAWLS 132 (176)
Q Consensus 96 l~eky~~-~VPVL~i~~idGe~l~~~~fd~deL~~~L~ 132 (176)
...++|. .||+++ +||+..++|.-+.+.|.++|.
T Consensus 159 ~a~~~gv~GvP~~v---v~g~~~~~G~~~~~~l~~~l~ 193 (193)
T PF01323_consen 159 EARQLGVFGVPTFV---VNGKYRFFGADRLDELEDALQ 193 (193)
T ss_dssp HHHHTTCSSSSEEE---ETTTEEEESCSSHHHHHHHH-
T ss_pred HHHHcCCcccCEEE---ECCEEEEECCCCHHHHHHHhC
Confidence 3345664 799999 799878889999999988873
No 283
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=69.89 E-value=4.1 Score=31.85 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=22.5
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHh
Q 030511 48 RKLVLYSKPGCCLCDGLKEKLQAAF 72 (176)
Q Consensus 48 ~kItLYTkpgC~lCe~aKe~Le~l~ 72 (176)
.+|++|+-+.||+|-.+++.|+++.
T Consensus 1 ~~i~~~~D~~cp~c~~~~~~l~~l~ 25 (193)
T cd03025 1 LELYYFIDPLCGWCYGFEPLLEKLK 25 (193)
T ss_pred CeEEEEECCCCchhhCchHHHHHHH
Confidence 3689999999999999999999874
No 284
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=69.11 E-value=63 Score=28.22 Aligned_cols=41 Identities=12% Similarity=-0.053 Sum_probs=24.7
Q ss_pred HHHHHhcCC------ccceeEEeccCCeEEEe------ccCCHHHHHHHHHhC
Q 030511 94 PEWEKSYQY------EIPVLARVLSDGTEVLM------ACINRFRIEAWLSQM 134 (176)
Q Consensus 94 ~el~eky~~------~VPVL~i~~idGe~l~~------~~fd~deL~~~L~~~ 134 (176)
.++.+.||. .+|..++...+|+.... .+-+.+++.+.|++.
T Consensus 172 ~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 172 REVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred hHHHHHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 345556664 36888765567775433 234677777777644
No 285
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=67.73 E-value=17 Score=31.10 Aligned_cols=44 Identities=25% Similarity=0.403 Sum_probs=32.0
Q ss_pred CCCCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHH
Q 030511 44 SSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPE 95 (176)
Q Consensus 44 ~~~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~e 95 (176)
....-++.+|.+..|+-|+..-..|-. ...++++-.++=..|++
T Consensus 106 ~~~~~rlalFvkd~C~~C~~~~~~l~a--------~~~~~Diylvgs~~dD~ 149 (200)
T TIGR03759 106 LQGGGRLALFVKDDCVACDARVQRLLA--------DNAPLDLYLVGSQGDDE 149 (200)
T ss_pred cCCCCeEEEEeCCCChHHHHHHHHHhc--------CCCceeEEEecCCCCHH
Confidence 445668999999999999998887743 22367777777445554
No 286
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=67.06 E-value=20 Score=28.89 Aligned_cols=78 Identities=14% Similarity=0.115 Sum_probs=44.2
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCCc--cceeEEeccCCeEEEeccCCHH
Q 030511 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYE--IPVLARVLSDGTEVLMACINRF 125 (176)
Q Consensus 48 ~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~~--VPVL~i~~idGe~l~~~~fd~d 125 (176)
+..+++---.|++|......|.+. ...+.+.|..+.=.....+.+.++.+ -+-.+....+|+.. ++.+
T Consensus 8 p~~vvlyDG~C~lC~~~vrfLi~~------D~~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~~~----~~sd 77 (137)
T COG3011 8 PDLVVLYDGVCPLCDGWVRFLIRR------DQGGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQLL----VGSD 77 (137)
T ss_pred CCEEEEECCcchhHHHHHHHHHHh------ccCCcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCceE----eccH
Confidence 345666667899999999999886 33334444444334455677777753 12222111344432 3455
Q ss_pred HHHHHHHhCC
Q 030511 126 RIEAWLSQMS 135 (176)
Q Consensus 126 eL~~~L~~~~ 135 (176)
.+.+.+....
T Consensus 78 A~~~i~~~L~ 87 (137)
T COG3011 78 AAIRILRLLP 87 (137)
T ss_pred HHHHHHHHCC
Confidence 5555555444
No 287
>PRK13191 putative peroxiredoxin; Provisional
Probab=64.96 E-value=38 Score=28.28 Aligned_cols=81 Identities=12% Similarity=-0.009 Sum_probs=47.7
Q ss_pred EEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCH---------------------------HHHHhcCC-
Q 030511 51 VLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP---------------------------EWEKSYQY- 102 (176)
Q Consensus 51 tLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~---------------------------el~eky~~- 102 (176)
..|...||+-|..-...|.+... +....|+++--+.+|... ++.++||.
T Consensus 39 ff~pa~ftpvC~tEl~~l~~~~~---ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ygv~ 115 (215)
T PRK13191 39 FSHPGDFTPVCTTEFYSFAKKYE---EFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRLGMI 115 (215)
T ss_pred EEeCCCCCCcCHHHHHHHHHHHH---HHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHHcCCc
Confidence 36679999999997777766421 011235555555555332 23334542
Q ss_pred -------ccceeEEeccCCeEEEe------ccCCHHHHHHHHHhC
Q 030511 103 -------EIPVLARVLSDGTEVLM------ACINRFRIEAWLSQM 134 (176)
Q Consensus 103 -------~VPVL~i~~idGe~l~~------~~fd~deL~~~L~~~ 134 (176)
.+|.+++...+|+.... .+-+.+++.+.|++.
T Consensus 116 ~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 116 HAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred ccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 25767765567765432 223788888888764
No 288
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=64.45 E-value=14 Score=33.36 Aligned_cols=68 Identities=21% Similarity=0.390 Sum_probs=52.6
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcC-----CCHHHHHhcCC--ccceeEEeccCCeEEEecc
Q 030511 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT-----TNPEWEKSYQY--EIPVLARVLSDGTEVLMAC 121 (176)
Q Consensus 49 kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDId-----eD~el~eky~~--~VPVL~i~~idGe~l~~~~ 121 (176)
..++|--|.--.-.++.-++.++ +++++..||+ .++.|+-+.+. +|||+. +|..+ -
T Consensus 26 ~~vLyhhpysf~sQkVrlvi~EK----------~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~----~g~~I---I 88 (325)
T KOG4420|consen 26 SLVLYHHPYSFSSQKVRLVIAEK----------GIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLI----HGDNI---I 88 (325)
T ss_pred cceeeecCcccccceeeeehhhc----------ccccceeeccCccccccCchheecCCCCCCceEe----cCCee---c
Confidence 48899888887777887777665 9999999998 23458877764 799996 67654 3
Q ss_pred CCHHHHHHHHHh
Q 030511 122 INRFRIEAWLSQ 133 (176)
Q Consensus 122 fd~deL~~~L~~ 133 (176)
.+..+|.+++++
T Consensus 89 ~d~tqIIdYvEr 100 (325)
T KOG4420|consen 89 SDYTQIIDYVER 100 (325)
T ss_pred ccHHHHHHHHHH
Confidence 588889888876
No 289
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=60.07 E-value=30 Score=27.10 Aligned_cols=70 Identities=20% Similarity=0.203 Sum_probs=43.8
Q ss_pred CCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCC-HHHHHhcC---CccceeEEeccCCeE--------EEec-cCC
Q 030511 57 GCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN-PEWEKSYQ---YEIPVLARVLSDGTE--------VLMA-CIN 123 (176)
Q Consensus 57 gC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD-~el~eky~---~~VPVL~i~~idGe~--------l~~~-~fd 123 (176)
.|+.|...+-+|...- .-...++++.||--.- .++.+..| .+.|||+. .+|.. -... --|
T Consensus 23 ~Cp~c~~iEGlLa~~P-----~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL--~~~~~~~~~~~~~~~~rfi~d 95 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFP-----DLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVL--ADGAPSPDDAGSHGGRRFIDD 95 (112)
T ss_pred ECCchHHHHhHHhhCh-----hhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEe--CCCCCCcccccccCCeEEeCC
Confidence 3999999999997752 1123677777877654 34555555 57999983 33321 0000 136
Q ss_pred HHHHHHHHHh
Q 030511 124 RFRIEAWLSQ 133 (176)
Q Consensus 124 ~deL~~~L~~ 133 (176)
+++|.++|.+
T Consensus 96 ~~~I~~~La~ 105 (112)
T PF11287_consen 96 PRRILRYLAE 105 (112)
T ss_pred HHHHHHHHHH
Confidence 6788888764
No 290
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=57.18 E-value=10 Score=28.53 Aligned_cols=35 Identities=9% Similarity=0.163 Sum_probs=27.2
Q ss_pred HHHHhcCC-ccceeEEeccCCeEEEeccCCHHHHHHHHHh
Q 030511 95 EWEKSYQY-EIPVLARVLSDGTEVLMACINRFRIEAWLSQ 133 (176)
Q Consensus 95 el~eky~~-~VPVL~i~~idGe~l~~~~fd~deL~~~L~~ 133 (176)
++..+++. .+|.++ +||+.+ .+..+.++|.+++.+
T Consensus 127 ~~~~~~~i~~tPt~~---inG~~~-~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 127 QLARQLGITGTPTFF---INGKYV-VGPYTIEELKELIDK 162 (162)
T ss_dssp HHHHHHT-SSSSEEE---ETTCEE-ETTTSHHHHHHHHHH
T ss_pred HHHHHcCCccccEEE---ECCEEe-CCCCCHHHHHHHHcC
Confidence 45566776 699999 899875 568999999998864
No 291
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=57.00 E-value=23 Score=27.94 Aligned_cols=24 Identities=21% Similarity=0.555 Sum_probs=19.7
Q ss_pred ceEEEEe-CCCCCchHHHHHHHHHH
Q 030511 48 RKLVLYS-KPGCCLCDGLKEKLQAA 71 (176)
Q Consensus 48 ~kItLYT-kpgC~lCe~aKe~Le~l 71 (176)
-+|+||| .+-|+-|..+-+-+...
T Consensus 97 G~i~l~te~~pC~SC~~vi~qF~~~ 121 (133)
T PF14424_consen 97 GTIDLFTELPPCESCSNVIEQFKKD 121 (133)
T ss_pred ceEEEEecCCcChhHHHHHHHHHHH
Confidence 5799999 88899999877666553
No 292
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=56.81 E-value=68 Score=24.57 Aligned_cols=76 Identities=11% Similarity=0.212 Sum_probs=48.1
Q ss_pred ceEEEEe-CCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCH----HHHHhcCC--ccceeEEeccCCeEEEe-
Q 030511 48 RKLVLYS-KPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP----EWEKSYQY--EIPVLARVLSDGTEVLM- 119 (176)
Q Consensus 48 ~kItLYT-kpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~----el~eky~~--~VPVL~i~~idGe~l~~- 119 (176)
..+.+|- .+.||--.++...+++... ....++++-.+|+-++- +..++||. +=|.+++. .||+.+..
T Consensus 20 ~~~~iFKHSt~C~IS~~a~~~~e~~~~----~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili-~~g~~v~~a 94 (105)
T PF11009_consen 20 KPVLIFKHSTRCPISAMALREFEKFWE----ESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILI-KNGKVVWHA 94 (105)
T ss_dssp SEEEEEEE-TT-HHHHHHHHHHHHHHH----HHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEE-ETTEEEEEE
T ss_pred CcEEEEEeCCCChhhHHHHHHHHHHhh----cCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEE-ECCEEEEEC
Confidence 3466666 6679999999999988742 11123899999998764 57788986 57998843 88886543
Q ss_pred --ccCCHHHHH
Q 030511 120 --ACINRFRIE 128 (176)
Q Consensus 120 --~~fd~deL~ 128 (176)
+.++.++|+
T Consensus 95 SH~~It~~~lk 105 (105)
T PF11009_consen 95 SHWDITAEALK 105 (105)
T ss_dssp EGGG-SHHHH-
T ss_pred ccccCCHHhcC
Confidence 567776653
No 293
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=56.74 E-value=11 Score=27.80 Aligned_cols=33 Identities=9% Similarity=0.168 Sum_probs=24.9
Q ss_pred HHHHhcCC-ccceeEEeccCCeEEEeccCCHHHHHHHH
Q 030511 95 EWEKSYQY-EIPVLARVLSDGTEVLMACINRFRIEAWL 131 (176)
Q Consensus 95 el~eky~~-~VPVL~i~~idGe~l~~~~fd~deL~~~L 131 (176)
++..++|. .+|.++ ++|+ ..+|..+.+.|.+++
T Consensus 120 ~~~~~~gi~gtPt~~---v~g~-~~~G~~~~~~l~~~i 153 (154)
T cd03023 120 QLARALGITGTPAFI---IGDT-VIPGAVPADTLKEAI 153 (154)
T ss_pred HHHHHcCCCcCCeEE---ECCE-EecCCCCHHHHHHHh
Confidence 34556676 599999 7886 567888888888876
No 294
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=55.49 E-value=8.5 Score=29.94 Aligned_cols=23 Identities=17% Similarity=0.036 Sum_probs=20.7
Q ss_pred EEEEeCCCCCchHHHHHHHHHHh
Q 030511 50 LVLYSKPGCCLCDGLKEKLQAAF 72 (176)
Q Consensus 50 ItLYTkpgC~lCe~aKe~Le~l~ 72 (176)
|++|+-+-||+|--.+..|+++.
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~ 23 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALA 23 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHH
Confidence 57899999999999999999873
No 295
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=55.43 E-value=37 Score=31.12 Aligned_cols=88 Identities=14% Similarity=0.209 Sum_probs=54.5
Q ss_pred CCceEEEEeC----CCCCchHHHHHHHHHHhc--cCCCCCCC--CcceEEEEcCCCHHHHHhcCC-ccceeEEecc-CCe
Q 030511 46 STRKLVLYSK----PGCCLCDGLKEKLQAAFL--LSGPDSLH--DVDLQVRDITTNPEWEKSYQY-EIPVLARVLS-DGT 115 (176)
Q Consensus 46 ~~~kItLYTk----pgC~lCe~aKe~Le~l~~--~~~~~~~~--gie~eeIDIdeD~el~eky~~-~VPVL~i~~i-dGe 115 (176)
.---|++||. -+|.+|..+.+...-++. .......+ .+=|-+||.++-|+.++.++. .+|-++.-.. .|.
T Consensus 60 Nys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~Fq~l~ln~~P~l~~f~P~~~n 139 (331)
T KOG2603|consen 60 NYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQVFQQLNLNNVPHLVLFSPAKGN 139 (331)
T ss_pred CeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHHHHHhcccCCCeEEEeCCCccc
Confidence 3336888884 359999999987655431 00001112 455889999999999999997 6999984210 110
Q ss_pred -------EEEeccCCHHHHHHHHHh
Q 030511 116 -------EVLMACINRFRIEAWLSQ 133 (176)
Q Consensus 116 -------~l~~~~fd~deL~~~L~~ 133 (176)
...-.++..+++.++.++
T Consensus 140 ~~~s~~~d~~~~g~~Ae~iaqfv~~ 164 (331)
T KOG2603|consen 140 KKRSDQMDQQDLGFEAEQIAQFVAD 164 (331)
T ss_pred cccCccchhhhcchhHHHHHHHHHH
Confidence 011134557777777654
No 296
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=53.78 E-value=13 Score=30.29 Aligned_cols=25 Identities=20% Similarity=-0.104 Sum_probs=22.3
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHh
Q 030511 48 RKLVLYSKPGCCLCDGLKEKLQAAF 72 (176)
Q Consensus 48 ~kItLYTkpgC~lCe~aKe~Le~l~ 72 (176)
++|.+|+-.-||+|=-++..|+++.
T Consensus 1 ~~Id~~~D~vcPwcylg~~~l~~~~ 25 (209)
T cd03021 1 PKIELYYDVVSPYSYLAFEVLCRYQ 25 (209)
T ss_pred CceEEEEeCCChHHHHHHHHHHHHH
Confidence 4789999999999999999998863
No 297
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=53.75 E-value=25 Score=28.66 Aligned_cols=86 Identities=9% Similarity=0.093 Sum_probs=47.0
Q ss_pred CCceEEEEeCCCCCchHHHHHHH---HHHhccCCCCCCCCcceEEEEcCCC----HH----HH--HhcCC--c-cceeEE
Q 030511 46 STRKLVLYSKPGCCLCDGLKEKL---QAAFLLSGPDSLHDVDLQVRDITTN----PE----WE--KSYQY--E-IPVLAR 109 (176)
Q Consensus 46 ~~~kItLYTkpgC~lCe~aKe~L---e~l~~~~~~~~~~gie~eeIDIdeD----~e----l~--eky~~--~-VPVL~i 109 (176)
..+.|+-|..-+||.|....+.+ +.+.. .-..++.+..+.+.-. +. +. ...+. . ..-++.
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~----~~~~~v~~~~~~~~f~~~~~~~~~~a~~~a~~~~~~~k~~~~lf~ 112 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKK----KLPEGTKMTKYHVEFLGPLGKELTQAWAVAMALGVEDKVTPPLFE 112 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHH----hCCCCCeEEEecccccchhhHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 45679999999999999988754 33320 1112555665555321 11 11 11121 0 122321
Q ss_pred eccCCeEEEeccCCHHHHHHHHHhCCchhH
Q 030511 110 VLSDGTEVLMACINRFRIEAWLSQMSLDCV 139 (176)
Q Consensus 110 ~~idGe~l~~~~fd~deL~~~L~~~~l~~~ 139 (176)
...+++ ...+.+.|.+++.+.|+|.-
T Consensus 113 ~i~~~~----~~~~~~~L~~~a~~~Gld~~ 138 (207)
T PRK10954 113 GVQKTQ----TIQSAADIRDVFIKAGVKGE 138 (207)
T ss_pred HHHccC----CCCCHHHHHHHHHHcCCCHH
Confidence 111121 24678889998999999863
No 298
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=53.02 E-value=60 Score=25.61 Aligned_cols=54 Identities=17% Similarity=0.269 Sum_probs=33.9
Q ss_pred cCCCHHHHHhcCC-ccceeEEeccCC------------eEEEeccCCHHHHHHHHHhC-CchhHHHHh
Q 030511 90 ITTNPEWEKSYQY-EIPVLARVLSDG------------TEVLMACINRFRIEAWLSQM-SLDCVMAYQ 143 (176)
Q Consensus 90 IdeD~el~eky~~-~VPVL~i~~idG------------e~l~~~~fd~deL~~~L~~~-~l~~~~~~~ 143 (176)
+.=||.|+++|+. .||.+++...++ -..-+|..+-+.-.+.+.+. ...+..|-|
T Consensus 57 v~IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~~g~~~~~~A~~ 124 (130)
T TIGR02742 57 VQIDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQDGDSPQIVAQQ 124 (130)
T ss_pred EEEChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHHhCCCcHHHHHH
Confidence 3348999999998 599998642221 12445777777777777643 333334433
No 299
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=52.78 E-value=16 Score=28.79 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=20.5
Q ss_pred EEEEeCCCCCchHHHHHHHHHHh
Q 030511 50 LVLYSKPGCCLCDGLKEKLQAAF 72 (176)
Q Consensus 50 ItLYTkpgC~lCe~aKe~Le~l~ 72 (176)
|++|+-+-||+|--+...|+++.
T Consensus 1 I~~~~D~~cP~cyl~~~~l~~~~ 23 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLEKAL 23 (201)
T ss_pred CeEEecCcCccHHHHHHHHHHHH
Confidence 57999999999999999998864
No 300
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=52.46 E-value=13 Score=32.17 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=25.3
Q ss_pred CCCCceEEEEeCCCCCchHHHHHHHHHHh
Q 030511 44 SSSTRKLVLYSKPGCCLCDGLKEKLQAAF 72 (176)
Q Consensus 44 ~~~~~kItLYTkpgC~lCe~aKe~Le~l~ 72 (176)
+....+|.+|+-+=||+|=.-+..|++..
T Consensus 2 ~~~~i~I~v~sD~vCPwC~ig~~rL~ka~ 30 (225)
T COG2761 2 NPMKIEIDVFSDVVCPWCYIGKRRLEKAL 30 (225)
T ss_pred CCceEEEEEEeCCcCchhhcCHHHHHHHH
Confidence 45667899999999999999999998874
No 301
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=52.33 E-value=32 Score=29.69 Aligned_cols=44 Identities=14% Similarity=0.220 Sum_probs=30.9
Q ss_pred CCHHHHHhcCC-ccceeEEeccCCeEEEeccCCHHHHHHHHHhCC
Q 030511 92 TNPEWEKSYQY-EIPVLARVLSDGTEVLMACINRFRIEAWLSQMS 135 (176)
Q Consensus 92 eD~el~eky~~-~VPVL~i~~idGe~l~~~~fd~deL~~~L~~~~ 135 (176)
=||.|+++|+. .||++++.-..+-...+|.++-.+-.+.+...|
T Consensus 150 IDP~lF~~F~I~~VPafVv~C~~~yD~I~GNIsl~~ALe~iA~~G 194 (212)
T PRK13730 150 IDPTLFSQYGIRSVPALVVFCSQGYDIIRGNLRVGQALEKVAATG 194 (212)
T ss_pred ECHHHHHhcCCccccEEEEEcCCCCCEEEecccHHHHHHHHHhcC
Confidence 38999999998 599999542222234567777777777777655
No 302
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=52.07 E-value=39 Score=25.74 Aligned_cols=66 Identities=18% Similarity=0.230 Sum_probs=45.6
Q ss_pred CcceEEEEcCCCHHHHHhcCCccceeEEecc-CCeEEEecc--CCHHHHHHHHHhCCchhHHHHhhhhhhcc
Q 030511 82 DVDLQVRDITTNPEWEKSYQYEIPVLARVLS-DGTEVLMAC--INRFRIEAWLSQMSLDCVMAYQQLSFLNI 150 (176)
Q Consensus 82 gie~eeIDIdeD~el~eky~~~VPVL~i~~i-dGe~l~~~~--fd~deL~~~L~~~~l~~~~~~~~~~~~~~ 150 (176)
.+.|-.++ ++++.++++...|.|++-.. |++...+.+ ++.++|.+|+..++++-+..+-.-.+..+
T Consensus 22 ~~~F~~~~---~~~~~~~~~~~~p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P~v~~~t~~n~~~~ 90 (184)
T PF13848_consen 22 DYQFGVTF---NEELAKKYGIKEPTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFPLVPELTPENFEKL 90 (184)
T ss_dssp TSEEEEEE----HHHHHHCTCSSSEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSSTSCEEESTTHHHHH
T ss_pred CcEEEEEc---HHHHHHHhCCCCCcEEEeccCCCCceecccccCCHHHHHHHHHHhccccccccchhhHHHH
Confidence 35555555 78899999998899984322 344455544 89999999999999988765544444333
No 303
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=51.88 E-value=26 Score=30.70 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=20.9
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHH
Q 030511 46 STRKLVLYSKPGCCLCDGLKEKLQAA 71 (176)
Q Consensus 46 ~~~kItLYTkpgC~lCe~aKe~Le~l 71 (176)
..+.|.+-+..|||+|....-.|-..
T Consensus 58 Gk~~v~~igw~gCP~~A~~sW~L~~A 83 (249)
T PF06053_consen 58 GKPEVIFIGWEGCPYCAAESWALYIA 83 (249)
T ss_pred CeeEEEEEecccCccchhhHHHHHHH
Confidence 45567777899999999998887654
No 304
>PRK15000 peroxidase; Provisional
Probab=47.16 E-value=1.2e+02 Score=24.88 Aligned_cols=17 Identities=6% Similarity=-0.031 Sum_probs=12.8
Q ss_pred CCCCCchHHHHHHHHHH
Q 030511 55 KPGCCLCDGLKEKLQAA 71 (176)
Q Consensus 55 kpgC~lCe~aKe~Le~l 71 (176)
+.+|+-|..-...|.+.
T Consensus 44 ~~~t~vC~~El~~l~~~ 60 (200)
T PRK15000 44 MDFTFVCPSELIAFDKR 60 (200)
T ss_pred CCCCCCCHHHHHHHHHH
Confidence 45899999977666654
No 305
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=47.05 E-value=1.3e+02 Score=24.32 Aligned_cols=41 Identities=2% Similarity=0.023 Sum_probs=23.5
Q ss_pred eEEEEe-CCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCC
Q 030511 49 KLVLYS-KPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT 92 (176)
Q Consensus 49 kItLYT-kpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIde 92 (176)
.|.+|. +.+|+.|......|.+... .....|+++.-|.+|.
T Consensus 39 ~lL~F~p~~~~~~C~~e~~~l~~~~~---~f~~~g~~vv~IS~d~ 80 (199)
T PTZ00253 39 VVLFFYPLDFTFVCPTEIIQFSDSVK---RFNELNCEVLACSMDS 80 (199)
T ss_pred EEEEEEcCCCCCcCHHHHHHHHHHHH---HHHHcCCEEEEEeCCC
Confidence 344444 5789999877666655421 1122366666666663
No 306
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=46.15 E-value=75 Score=26.02 Aligned_cols=46 Identities=13% Similarity=0.163 Sum_probs=30.0
Q ss_pred CCCCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCC
Q 030511 44 SSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT 92 (176)
Q Consensus 44 ~~~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIde 92 (176)
+.....+..|.-..||+|.+.-..+.+.... .....+.+.+..+..
T Consensus 82 ~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~---~~~~~~~~~~~~f~~ 127 (244)
T COG1651 82 PYAPVTVVEFFDYTCPYCKEAFPELKKKYID---DGKVRLVLREFPFLD 127 (244)
T ss_pred CCCCceEEEEecCcCccHHHHHHHHHHHhhh---cCCCceEEEEeecCC
Confidence 3337899999999999997777777764211 111234566666654
No 307
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=45.34 E-value=92 Score=24.89 Aligned_cols=53 Identities=15% Similarity=0.233 Sum_probs=36.0
Q ss_pred CCcceEEEEcC-----CCHHHHHhcCC---ccceeEEeccCC--eEEEe---ccCCHHHHHHHHHhC
Q 030511 81 HDVDLQVRDIT-----TNPEWEKSYQY---EIPVLARVLSDG--TEVLM---ACINRFRIEAWLSQM 134 (176)
Q Consensus 81 ~gie~eeIDId-----eD~el~eky~~---~VPVL~i~~idG--e~l~~---~~fd~deL~~~L~~~ 134 (176)
..+=+-+|-|. +|.++.++|+. ..||+.. +..| +.+.+ +.+..+.|++|+.++
T Consensus 53 ~dLLvAeVGikDYGek~N~~Laery~i~ke~fPv~~L-F~~~~~~pv~~p~~~~~t~~~l~~fvk~~ 118 (126)
T PF07912_consen 53 DDLLVAEVGIKDYGEKENMELAERYKIDKEDFPVIYL-FVGDKEEPVRYPFDGDVTADNLQRFVKSN 118 (126)
T ss_dssp SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-SEEEE-EESSTTSEEEE-TCS-S-HHHHHHHHHHT
T ss_pred CceEEEEeCcccccchhHHHHHHHhCCCcccCCEEEE-ecCCCCCCccCCccCCccHHHHHHHHHhC
Confidence 35667778885 57899999996 4899873 3422 23433 569999999999988
No 308
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=43.77 E-value=37 Score=29.21 Aligned_cols=66 Identities=17% Similarity=0.370 Sum_probs=37.6
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcC--CC-HHHHHhc---C--CccceeEEeccCCeEEEec
Q 030511 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--TN-PEWEKSY---Q--YEIPVLARVLSDGTEVLMA 120 (176)
Q Consensus 49 kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDId--eD-~el~eky---~--~~VPVL~i~~idGe~l~~~ 120 (176)
.+.=|++++|.+=.+.--.|. +++|+.+-|+ .+ ++.-.+| + ..||.|+ +||..+.
T Consensus 7 iLYSYWrSSCswRVRiALaLK------------~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~---i~g~tl~-- 69 (217)
T KOG0868|consen 7 ILYSYWRSSCSWRVRIALALK------------GIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLV---IDGLTLT-- 69 (217)
T ss_pred hhhhhhcccchHHHHHHHHHc------------CCCcceeehhhhcchhhhhhHHhhcCchhhCCeEE---ECCEEee--
Confidence 344456999987655544443 5566555554 33 2222233 3 2599999 8997664
Q ss_pred cCCHHHHHHHHHh
Q 030511 121 CINRFRIEAWLSQ 133 (176)
Q Consensus 121 ~fd~deL~~~L~~ 133 (176)
+.-.|..+|++
T Consensus 70 --eS~AII~YLeE 80 (217)
T KOG0868|consen 70 --ESLAIIEYLEE 80 (217)
T ss_pred --hHHHHHHHHHh
Confidence 33445555544
No 309
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=42.24 E-value=70 Score=23.97 Aligned_cols=52 Identities=17% Similarity=0.209 Sum_probs=34.8
Q ss_pred CcceEEEEcCCCHHHHHhcCC---c--cceeEEeccCC-eEEEeccC-CHHHHHHHHHh
Q 030511 82 DVDLQVRDITTNPEWEKSYQY---E--IPVLARVLSDG-TEVLMACI-NRFRIEAWLSQ 133 (176)
Q Consensus 82 gie~eeIDIdeD~el~eky~~---~--VPVL~i~~idG-e~l~~~~f-d~deL~~~L~~ 133 (176)
.+-|..+|.++.....+-+|. . .|++.+...++ +...-+.+ +.+.|.+++.+
T Consensus 51 ki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~~~~KY~~~~~~~t~e~i~~F~~~ 109 (111)
T cd03073 51 KLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTAKGKKYVMEEEFSDVDALEEFLED 109 (111)
T ss_pred eEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeCCCCccCCCcccCCHHHHHHHHHH
Confidence 578888888876667777775 3 89998643344 22212345 77888888765
No 310
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=41.91 E-value=1.4e+02 Score=26.72 Aligned_cols=35 Identities=17% Similarity=0.091 Sum_probs=27.1
Q ss_pred CCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCH
Q 030511 55 KPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP 94 (176)
Q Consensus 55 kpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~ 94 (176)
--||+.|.+++-.|+.+. ....++.|.-+||..+.
T Consensus 82 ELGsG~~~Kt~~LL~aL~-----~~~~~~~Y~plDIS~~~ 116 (319)
T TIGR03439 82 ELGSGNLRKVGILLEALE-----RQKKSVDYYALDVSRSE 116 (319)
T ss_pred EECCCchHHHHHHHHHHH-----hcCCCceEEEEECCHHH
Confidence 459999999999999873 12236789999998653
No 311
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=41.25 E-value=48 Score=26.72 Aligned_cols=79 Identities=19% Similarity=0.261 Sum_probs=47.8
Q ss_pred CCCCCCceEEEEeCCCCCch--HHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhc----CCccceeEEeccCCe
Q 030511 42 SSSSSTRKLVLYSKPGCCLC--DGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSY----QYEIPVLARVLSDGT 115 (176)
Q Consensus 42 ~~~~~~~kItLYTkpgC~lC--e~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky----~~~VPVL~i~~idGe 115 (176)
..+.....|.+=+...|+.+ +++.+.|++.. |++.-+.+-|..-.+.... ...-|++. +||+
T Consensus 70 ~~p~Gk~~I~VC~~~~C~~~G~~~ll~~l~~~L---------gi~~gett~Dg~ftL~~~~ClG~C~~aP~~~---in~~ 137 (156)
T PRK05988 70 THPPGRHVLKLCRAEACQAMGGDALAAHAKARL---------GIDFHQTTADGAVTLEPVYCLGLCACSPAAM---LDGE 137 (156)
T ss_pred CCCCCCEEEEEeCCchhhcCCHHHHHHHHHHHh---------CCCCCCcCCCCeEEEEeeeecCccCCCCeEE---ECCE
Confidence 34555667888889999988 44555555542 3332222221111122222 23689999 7887
Q ss_pred EEEeccCCHHHHHHHHHhC
Q 030511 116 EVLMACINRFRIEAWLSQM 134 (176)
Q Consensus 116 ~l~~~~fd~deL~~~L~~~ 134 (176)
. ++..+++++.+.|++.
T Consensus 138 ~--~~~lt~~~~~~il~~~ 154 (156)
T PRK05988 138 V--HGRLDPQRLDALLAEA 154 (156)
T ss_pred E--eCCCCHHHHHHHHHHh
Confidence 4 6789999999988753
No 312
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=40.64 E-value=1.1e+02 Score=24.88 Aligned_cols=59 Identities=15% Similarity=0.251 Sum_probs=44.4
Q ss_pred CCCCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCc-ceEEEEcCCCHHHHHhcCCc-ccee
Q 030511 44 SSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDV-DLQVRDITTNPEWEKSYQYE-IPVL 107 (176)
Q Consensus 44 ~~~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gi-e~eeIDIdeD~el~eky~~~-VPVL 107 (176)
+....-|+=|++.|=|.|-..-++|++.+. ...++ .+-.+||++-+++.+-|+.. .|.+
T Consensus 21 t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~-----~vsnfa~IylvdideV~~~~~~~~l~~p~tv 81 (142)
T KOG3414|consen 21 TEERLVVIRFGRDWDPTCMKMDELLSSIAE-----DVSNFAVIYLVDIDEVPDFVKMYELYDPPTV 81 (142)
T ss_pred ccceEEEEEecCCCCchHhhHHHHHHHHHH-----HHhhceEEEEEecchhhhhhhhhcccCCceE
Confidence 344456778999999999999999998752 11133 57789999999999999974 4444
No 313
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=39.15 E-value=22 Score=31.34 Aligned_cols=85 Identities=12% Similarity=0.111 Sum_probs=58.8
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-------ccceeEEeccCCeEEEe--
Q 030511 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-------EIPVLARVLSDGTEVLM-- 119 (176)
Q Consensus 49 kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~-------~VPVL~i~~idGe~l~~-- 119 (176)
.++=|-+.|-+-|...-.+..++. .....+++.|-.+||..=++..++|+. +.|++. .+.+|+++..
T Consensus 147 WlIeFfa~ws~~Cv~~spvfaeLS---~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQLPT~i-lFq~gkE~~RrP 222 (265)
T KOG0914|consen 147 WLIEFFACWSPKCVRFSPVFAELS---IKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQLPTYI-LFQKGKEVSRRP 222 (265)
T ss_pred EEEEEEeecChhhcccccccHHHH---HHhCCCCCcccceeeccCcChHHheeeccCcccccCCeEE-EEccchhhhcCc
Confidence 466666778888988888877763 224556889999999988888899874 479886 4577776543
Q ss_pred ----------ccCCHHHHHHHHHhCCchhHH
Q 030511 120 ----------ACINRFRIEAWLSQMSLDCVM 140 (176)
Q Consensus 120 ----------~~fd~deL~~~L~~~~l~~~~ 140 (176)
+.|+++.+.. ..+|+.|.
T Consensus 223 ~vd~~gra~s~~fSeenv~~---~F~Ln~Ly 250 (265)
T KOG0914|consen 223 DVDVKGRAVSFPFSEENVCQ---HFELNRLY 250 (265)
T ss_pred cccccCCcccccccHHHHHH---HhcHHHHH
Confidence 2455555544 34555554
No 314
>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed
Probab=38.55 E-value=39 Score=27.75 Aligned_cols=77 Identities=10% Similarity=0.083 Sum_probs=47.6
Q ss_pred CCCCCceEEEEeCCCCCch--HHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhc--C--CccceeEEeccCCeE
Q 030511 43 SSSSTRKLVLYSKPGCCLC--DGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSY--Q--YEIPVLARVLSDGTE 116 (176)
Q Consensus 43 ~~~~~~kItLYTkpgC~lC--e~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky--~--~~VPVL~i~~idGe~ 116 (176)
.+.....|.+=+...|+.+ +++.+.|++.. |++.-+..-|..-.+.... | ..-|++. +||+.
T Consensus 84 ~P~Gk~~I~VC~g~aC~~~G~~~ll~~l~~~L---------gi~~gett~DG~ftL~~~~ClG~C~~AP~~~---Vn~~~ 151 (169)
T PRK07571 84 KPSGEHTCVVCTGTACYVKGSAAILEDLENEL---------GIKAGETTADGKLSLLTARCLGACGIAPAVV---FDGKV 151 (169)
T ss_pred CCCCCEEEEEcCChHHHHCCcHHHHHHHHHHh---------CCCCCCcCCCCeEEEEEecccCccCCCCeEE---ECCEE
Confidence 4445557888888899996 55556665542 4433332221111122222 2 3579999 89975
Q ss_pred EEeccCCHHHHHHHHHh
Q 030511 117 VLMACINRFRIEAWLSQ 133 (176)
Q Consensus 117 l~~~~fd~deL~~~L~~ 133 (176)
+++.+++++.+.|++
T Consensus 152 --~~~lt~e~v~~il~~ 166 (169)
T PRK07571 152 --AGKQTPESVLEKVQG 166 (169)
T ss_pred --eCCCCHHHHHHHHHH
Confidence 679999999998875
No 315
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=38.39 E-value=34 Score=26.84 Aligned_cols=31 Identities=10% Similarity=0.078 Sum_probs=23.8
Q ss_pred HhcCC-ccceeEEeccCCeEEEeccCCHHHHHHHH
Q 030511 98 KSYQY-EIPVLARVLSDGTEVLMACINRFRIEAWL 131 (176)
Q Consensus 98 eky~~-~VPVL~i~~idGe~l~~~~fd~deL~~~L 131 (176)
.+.|. .+|.++ +||+....|..+.+.+.+++
T Consensus 169 ~~~gv~G~Pt~v---v~g~~~~~G~~~~~~~~~~i 200 (201)
T cd03024 169 RQLGISGVPFFV---FNGKYAVSGAQPPEVFLQAL 200 (201)
T ss_pred HHCCCCcCCEEE---ECCeEeecCCCCHHHHHHHh
Confidence 34554 699999 78887767888888888776
No 316
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=37.91 E-value=42 Score=21.12 Aligned_cols=25 Identities=12% Similarity=0.155 Sum_probs=20.8
Q ss_pred cCCeEEEeccCCHHHHHHHHHhCCchh
Q 030511 112 SDGTEVLMACINRFRIEAWLSQMSLDC 138 (176)
Q Consensus 112 idGe~l~~~~fd~deL~~~L~~~~l~~ 138 (176)
.||+. .|+|+.++|++++++..+++
T Consensus 6 ~~g~~--~GP~s~~el~~l~~~g~i~~ 30 (45)
T PF14237_consen 6 RNGQQ--QGPFSLEELRQLISSGEIDP 30 (45)
T ss_pred CCCeE--ECCcCHHHHHHHHHcCCCCC
Confidence 56765 58999999999999988764
No 317
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=37.12 E-value=1.2e+02 Score=22.12 Aligned_cols=37 Identities=14% Similarity=0.051 Sum_probs=26.0
Q ss_pred CCcceEEEEcCCCHHHHHhcCC-ccceeEEeccCCeEEE
Q 030511 81 HDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVL 118 (176)
Q Consensus 81 ~gie~eeIDIdeD~el~eky~~-~VPVL~i~~idGe~l~ 118 (176)
+++.|... .|.+.++.+.|+. .+|..++...+|+.+.
T Consensus 83 ~~~~~p~~-~D~~~~~~~~~~v~~~P~~~vid~~G~v~~ 120 (126)
T cd03012 83 YGITYPVA-NDNDYATWRAYGNQYWPALYLIDPTGNVRH 120 (126)
T ss_pred cCCCCCEE-ECCchHHHHHhCCCcCCeEEEECCCCcEEE
Confidence 36666533 3667788899986 5899987656787654
No 318
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=36.20 E-value=1.6e+02 Score=28.01 Aligned_cols=68 Identities=7% Similarity=-0.004 Sum_probs=45.3
Q ss_pred ccccccceeccccccccC------CCCCCCCceEEEEeCCCCC-----chHHHHHHHHHHhccCCCCCCCCcceEEEEcC
Q 030511 23 SRRRSRWGFSPLAYSSSS------SSSSSSTRKLVLYSKPGCC-----LCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT 91 (176)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~------~~~~~~~~kItLYTkpgC~-----lCe~aKe~Le~l~~~~~~~~~~gie~eeIDId 91 (176)
++..-||.+|.=-..+.+ -+.-..+++|++|..+.=+ +=..+++.|++... ...++.++.+|-.
T Consensus 19 ~~~~~R~DlT~~k~ytLS~~T~~~L~~L~~pV~I~~~~s~~~~~~~~~~~~~v~~lL~eY~~-----~s~~i~~~~iDP~ 93 (552)
T TIGR03521 19 SEFFFRFDLTEDKRYTLSPASKEVVKKLDDPVSIDIFLDGELPADFRRLQKETRQLLEEFAA-----YNPNIKFRFVNPL 93 (552)
T ss_pred hhheeeEecCCCCceecCHHHHHHHHhCCCCEEEEEEEcCCCchHHHHHHHHHHHHHHHHHH-----hCCCeEEEEeCCC
Confidence 355668888854433333 3445678899999877633 33567888888752 2236999999998
Q ss_pred CCHH
Q 030511 92 TNPE 95 (176)
Q Consensus 92 eD~e 95 (176)
.+++
T Consensus 94 ~~~~ 97 (552)
T TIGR03521 94 EEED 97 (552)
T ss_pred Ccch
Confidence 7654
No 319
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=35.10 E-value=1.3e+02 Score=22.30 Aligned_cols=79 Identities=13% Similarity=-0.005 Sum_probs=46.4
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhccCCC-C-CCCCcceEEEEcCCCHHHHHhcCC---ccceeEEeccCC--eEE-Eec
Q 030511 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGP-D-SLHDVDLQVRDITTNPEWEKSYQY---EIPVLARVLSDG--TEV-LMA 120 (176)
Q Consensus 49 kItLYTkpgC~lCe~aKe~Le~l~~~~~~-~-~~~gie~eeIDIdeD~el~eky~~---~VPVL~i~~idG--e~l-~~~ 120 (176)
.+.+|+..+ =+..++.+..++. . . -...+-|..+|.++.....+-+|. +.|.+.+...++ +.. .-+
T Consensus 20 ~~l~f~~~~---~~~~~~~~~~vAk---~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i~~~~~~~Ky~~~~~ 93 (111)
T cd03072 20 LILFHDKDD---LESLKEFKQAVAR---QLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIAIDSFRHMYLFPDFED 93 (111)
T ss_pred EEEEecchH---HHHHHHHHHHHHH---HHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEEEEcchhcCcCCCCcc
Confidence 356662222 1556666666531 0 0 112588999999876667778886 389998643333 111 124
Q ss_pred cCCHHHHHHHHHh
Q 030511 121 CINRFRIEAWLSQ 133 (176)
Q Consensus 121 ~fd~deL~~~L~~ 133 (176)
.++.+.|.+++.+
T Consensus 94 ~~t~~~i~~Fv~~ 106 (111)
T cd03072 94 VYVPGKLKQFVLD 106 (111)
T ss_pred ccCHHHHHHHHHH
Confidence 5677777777764
No 320
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=34.29 E-value=68 Score=26.06 Aligned_cols=59 Identities=14% Similarity=0.135 Sum_probs=38.9
Q ss_pred cCCeEEEeccCCHHHHHHHHHhC----CchhHHHHhhhhhhcccccCCCCC-CCCCHHHHHHHHHHHhc
Q 030511 112 SDGTEVLMACINRFRIEAWLSQM----SLDCVMAYQQLSFLNIVEALPRLS-PRIGVELIQKKIAAALR 175 (176)
Q Consensus 112 idGe~l~~~~fd~deL~~~L~~~----~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 175 (176)
-||+.. .|+..+|...+.++ +++...+-+. ..++...+.... ..+++++||..+...|.
T Consensus 54 RDG~~v---~Fd~~KI~~AI~kA~~a~~~~~~~~~~i--~~~V~~~l~~~~~~~IsveEIqDiVE~~L~ 117 (154)
T PRK00464 54 KDGRRE---PFDREKLRRGLRRACEKRPVSSEQIEAA--VSRIERQLRASGEREVPSKEIGELVMEELK 117 (154)
T ss_pred cCCcCC---CcCHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 788875 89999999999655 3333332222 144444454432 46999999999887764
No 321
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=33.79 E-value=1.3e+02 Score=26.27 Aligned_cols=110 Identities=18% Similarity=0.186 Sum_probs=69.0
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcC-CCH-------------------------HHHHh
Q 030511 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT-TNP-------------------------EWEKS 99 (176)
Q Consensus 46 ~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDId-eD~-------------------------el~ek 99 (176)
..+.++.|-..|+|-.+...+.+..+. +.|.++-|+-|- .|| ++.++
T Consensus 8 ~~~~li~yitaG~P~~~~~~~~~~~l~-------~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ 80 (259)
T PF00290_consen 8 GRKALIPYITAGYPDLETTLEILKALE-------EAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKE 80 (259)
T ss_dssp TBTEEEEEEETTSSSHHHHHHHHHHHH-------HTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHH-------HcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 345789999999999999999998873 348999999985 332 11222
Q ss_pred cC---CccceeEEeccCCeEEEe----ccCCHHHHHHHHHhCCchhHHH----------HhhhhhhcccccCCCCCCCCC
Q 030511 100 YQ---YEIPVLARVLSDGTEVLM----ACINRFRIEAWLSQMSLDCVMA----------YQQLSFLNIVEALPRLSPRIG 162 (176)
Q Consensus 100 y~---~~VPVL~i~~idGe~l~~----~~fd~deL~~~L~~~~l~~~~~----------~~~~~~~~~~~~~~~~~~~~~ 162 (176)
.. .++|+++ ..| ...+.+++.+.+.+.|+|+++- |....-.+-....|=++|--+
T Consensus 81 ir~~~~~~pivl--------m~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~ 152 (259)
T PF00290_consen 81 IRKKEPDIPIVL--------MTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTP 152 (259)
T ss_dssp HHHHCTSSEEEE--------EE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-
T ss_pred HhccCCCCCEEE--------EeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 22 5789887 333 2357888999999999988742 222222222334556666666
Q ss_pred HHHHHHHH
Q 030511 163 VELIQKKI 170 (176)
Q Consensus 163 ~~~~~~~~ 170 (176)
.+.|++..
T Consensus 153 ~~Ri~~i~ 160 (259)
T PF00290_consen 153 EERIKKIA 160 (259)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655543
No 322
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.35 E-value=2e+02 Score=25.05 Aligned_cols=78 Identities=13% Similarity=0.097 Sum_probs=45.6
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEE----------------EcC-----------CCHH---HH
Q 030511 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVR----------------DIT-----------TNPE---WE 97 (176)
Q Consensus 48 ~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeI----------------DId-----------eD~e---l~ 97 (176)
|+|-+|.+++...+...-+.+.+.. ..+++++... ++. .|-. ..
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L------~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDGTlL~a~ 74 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFL------KVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIAIGGDGTILRIE 74 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHH------HHCCCEEEEecchhhhcCcccccccccccccCCCEEEEEeCcHHHHHHH
Confidence 5789999999988887666665531 1224433321 111 1211 12
Q ss_pred HhcCCccceeEEeccCCeEEEeccCCHHHHHHHHHh
Q 030511 98 KSYQYEIPVLARVLSDGTEVLMACINRFRIEAWLSQ 133 (176)
Q Consensus 98 eky~~~VPVL~i~~idGe~l~~~~fd~deL~~~L~~ 133 (176)
..+...+|++-+ .-|..-|...++++++.+.|.+
T Consensus 75 ~~~~~~~pi~gI--n~G~lGFl~~~~~~~~~~~l~~ 108 (277)
T PRK03708 75 HKTKKDIPILGI--NMGTLGFLTEVEPEETFFALSR 108 (277)
T ss_pred HhcCCCCeEEEE--eCCCCCccccCCHHHHHHHHHH
Confidence 244567898864 4566545556788888877765
No 323
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=31.83 E-value=73 Score=28.64 Aligned_cols=65 Identities=22% Similarity=0.384 Sum_probs=43.0
Q ss_pred ceEEEEe---CCCC----CchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCCccceeEEeccCCeEEEec
Q 030511 48 RKLVLYS---KPGC----CLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGTEVLMA 120 (176)
Q Consensus 48 ~kItLYT---kpgC----~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~~VPVL~i~~idGe~l~~~ 120 (176)
-.|.||. ..+| |+|-+++-+|+.. +++||.+|-.-. ...-+-.+|-|- .||+++.
T Consensus 44 D~VYLyQF~R~~~~PnLSPfClKvEt~lR~~----------~IpYE~~~~~~~---~rSr~G~lPFIE---LNGe~ia-- 105 (281)
T KOG4244|consen 44 DTVYLYQFPRTKTCPNLSPFCLKVETFLRAY----------DIPYEIVDCSLK---RRSRNGTLPFIE---LNGEHIA-- 105 (281)
T ss_pred CeEEEEeccccCCCCCCChHHHHHHHHHHHh----------CCCceeccccce---eeccCCCcceEE---eCCeecc--
Confidence 3577877 3345 5899999999986 899998875321 011122589988 8999875
Q ss_pred cCCHHHHHHHHH
Q 030511 121 CINRFRIEAWLS 132 (176)
Q Consensus 121 ~fd~deL~~~L~ 132 (176)
|.+-|...|+
T Consensus 106 --DS~~I~~~L~ 115 (281)
T KOG4244|consen 106 --DSDLIEDRLR 115 (281)
T ss_pred --ccHHHHHHHH
Confidence 4444444443
No 324
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=31.50 E-value=47 Score=26.72 Aligned_cols=21 Identities=29% Similarity=0.637 Sum_probs=17.5
Q ss_pred EEeCCCCCchHHHHHHHHHHh
Q 030511 52 LYSKPGCCLCDGLKEKLQAAF 72 (176)
Q Consensus 52 LYTkpgC~lCe~aKe~Le~l~ 72 (176)
+|+.|-|++|=..++.+.++.
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~ 22 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLK 22 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHH
T ss_pred eeeCCCChHHHHhHHHHHHHH
Confidence 799999999999999999974
No 325
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=31.41 E-value=92 Score=24.32 Aligned_cols=57 Identities=12% Similarity=0.068 Sum_probs=29.1
Q ss_pred eEEEEeCCCCCchHHH-HHHHHHHhccCCCCCCCCc-ceEEEEcCCC---HHHHHhcCC--ccceeE
Q 030511 49 KLVLYSKPGCCLCDGL-KEKLQAAFLLSGPDSLHDV-DLQVRDITTN---PEWEKSYQY--EIPVLA 108 (176)
Q Consensus 49 kItLYTkpgC~lCe~a-Ke~Le~l~~~~~~~~~~gi-e~eeIDIdeD---~el~eky~~--~VPVL~ 108 (176)
-|.+|-+.+|+.|..- -..+.+... .....|. .+--+-.|.. .+|.++++. .+|.|-
T Consensus 33 vl~fyP~~~tp~Ct~e~~~~~~~~~~---~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~~~~f~lLs 96 (155)
T cd03013 33 VIFGVPGAFTPTCSAQHLPGYVENAD---ELKAKGVDEVICVSVNDPFVMKAWGKALGAKDKIRFLA 96 (155)
T ss_pred EEEEeCCCCCCCCchhHHHHHHHhHH---HHHHCCCCEEEEEECCCHHHHHHHHHhhCCCCcEEEEE
Confidence 3555558889999975 333333210 0011244 2444444322 247777776 566554
No 326
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=31.14 E-value=2.6e+02 Score=23.44 Aligned_cols=136 Identities=21% Similarity=0.249 Sum_probs=77.3
Q ss_pred ccceeccccccccCCCCCCCCceEEEE--eCCCCCchH----HHHHHHHHHhccCCCCCCCCcceEEEEcC--------C
Q 030511 27 SRWGFSPLAYSSSSSSSSSSTRKLVLY--SKPGCCLCD----GLKEKLQAAFLLSGPDSLHDVDLQVRDIT--------T 92 (176)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~kItLY--TkpgC~lCe----~aKe~Le~l~~~~~~~~~~gie~eeIDId--------e 92 (176)
+-+.|+.....---.|...-.-+|.|. ..+.|++-+ ++.+..++. ..+|+++-..--. .
T Consensus 13 siydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky-------~~~Gl~ILaFPCNQFg~QEp~~ 85 (171)
T KOG1651|consen 13 SIYDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKY-------KDQGLEILAFPCNQFGNQEPGS 85 (171)
T ss_pred ceeeeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHH-------hhCCeEEEEeccccccCcCCCC
Confidence 445565554433222222222244444 489999998 455555554 2345554443332 2
Q ss_pred CHH----HHHhcCCccceeEEeccCCeEEEeccCCHHHHHHHHHhCCchhHHHHhhhhhhcc-----cccCCCCCCCCCH
Q 030511 93 NPE----WEKSYQYEIPVLARVLSDGTEVLMACINRFRIEAWLSQMSLDCVMAYQQLSFLNI-----VEALPRLSPRIGV 163 (176)
Q Consensus 93 D~e----l~eky~~~VPVL~i~~idGe~l~~~~fd~deL~~~L~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 163 (176)
|.| ...+|+.+.|+.--..++|. +.+-+.++|.......+-.--...|-.- -..+-|.+|+.+.
T Consensus 86 n~Ei~~f~~~r~~~~f~if~KidVNG~-------~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ptt~p 158 (171)
T KOG1651|consen 86 NEEILNFVKVRYGAEFPIFQKIDVNGD-------NADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSPTTSP 158 (171)
T ss_pred cHHHHHHHHhccCCCCccEeEEecCCC-------CCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCCCCCc
Confidence 344 33567878887753335554 5677888888776653322111112111 1246799999999
Q ss_pred HHHHHHHHHHhcC
Q 030511 164 ELIQKKIAAALRQ 176 (176)
Q Consensus 164 ~~~~~~~~~~~~~ 176 (176)
..+++-|..+|.+
T Consensus 159 ~~~~~dIe~lL~~ 171 (171)
T KOG1651|consen 159 LDIEKDIEKLLAQ 171 (171)
T ss_pred cccchhHHHHhcC
Confidence 9999999988865
No 327
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.82 E-value=1.9e+02 Score=25.45 Aligned_cols=81 Identities=15% Similarity=0.174 Sum_probs=47.3
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEc------------------C----------CCHH--
Q 030511 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDI------------------T----------TNPE-- 95 (176)
Q Consensus 46 ~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDI------------------d----------eD~e-- 95 (176)
++.+|-++.+++.+.+.++-+.+.+.. ..+++++...+- . .|=.
T Consensus 3 ~~~~v~iv~~~~k~~a~e~~~~i~~~L------~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGt~l 76 (295)
T PRK01231 3 SFRNIGLIGRLGSSSVVETLRRLKDFL------LDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIVVGGDGSLL 76 (295)
T ss_pred CCCEEEEEecCCCHHHHHHHHHHHHHH------HHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEEEeCcHHHH
Confidence 466799999999988887666555532 112444332211 0 1111
Q ss_pred -HHHhc-CCccceeEEeccCCeEEEeccCCHHHHHHHHHhC
Q 030511 96 -WEKSY-QYEIPVLARVLSDGTEVLMACINRFRIEAWLSQM 134 (176)
Q Consensus 96 -l~eky-~~~VPVL~i~~idGe~l~~~~fd~deL~~~L~~~ 134 (176)
....+ ...+|++-+ .-|+.-|...++.+++.+.|.+.
T Consensus 77 ~~~~~~~~~~~Pvlgi--n~G~lGFl~~~~~~~~~~~l~~~ 115 (295)
T PRK01231 77 GAARALARHNVPVLGI--NRGRLGFLTDIRPDELEFKLAEV 115 (295)
T ss_pred HHHHHhcCCCCCEEEE--eCCcccccccCCHHHHHHHHHHH
Confidence 11223 357898863 45766566678888888777653
No 328
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=30.43 E-value=2.4e+02 Score=21.27 Aligned_cols=52 Identities=17% Similarity=0.149 Sum_probs=33.4
Q ss_pred CcceEEEEcCCCH--HHHHhcCC-ccceeEEe-ccCCe--EE--EeccCCHHHHHHHHHh
Q 030511 82 DVDLQVRDITTNP--EWEKSYQY-EIPVLARV-LSDGT--EV--LMACINRFRIEAWLSQ 133 (176)
Q Consensus 82 gie~eeIDIdeD~--el~eky~~-~VPVL~i~-~idGe--~l--~~~~fd~deL~~~L~~ 133 (176)
++-+--.|+++.+ ++...++. ..|.+.+. ..+++ .+ ..|..++++|...|..
T Consensus 52 ~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~ 111 (116)
T cd02991 52 RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMTIVGRLEGLIQPEDLINRLTF 111 (116)
T ss_pred CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceEEEEEEeCCCCHHHHHHHHHH
Confidence 5667778998655 45566775 58998742 11333 22 2377888888887764
No 329
>cd07973 Spt4 Transcription elongation factor Spt4. Spt4 is a transcription elongation factor. Three transcription-elongation factors Spt4, Spt5, and Spt6, are conserved among eukaryotes and are essential for transcription via the modulation of chromatin structure. It is known that Spt4, Spt5, and Spt6 are general transcription-elongation factors, controlling transcription both positively and negatively in important regulatory and developmental roles. Spt4 functions entirely in the context of the Spt4-Spt5 heterodimer and it has been found only as a complex to Spt5 in Yeast and Human. Spt4 is a small protein that has zinc finger at the N-terminus. Spt5 is a large protein that has several interesting structural features of an acidic N-terminus, a single NGN domain, five or six KOW domains, and a set of simple C-termianl repeats. Spt4 binds to Spt5 NGN domain. Unlike Spt5, Spt4 is not essential for viability in yeast, however Spt4 is critical for normal function of the Spt4-Spt5 compl
Probab=30.06 E-value=65 Score=24.44 Aligned_cols=40 Identities=13% Similarity=0.271 Sum_probs=26.3
Q ss_pred cCCCHHHHHhc-CCc--cceeEEeccCCeEEEeccCCHHHHHHHHHhCCc
Q 030511 90 ITTNPEWEKSY-QYE--IPVLARVLSDGTEVLMACINRFRIEAWLSQMSL 136 (176)
Q Consensus 90 IdeD~el~eky-~~~--VPVL~i~~idGe~l~~~~fd~deL~~~L~~~~l 136 (176)
++-+..|.+++ +.+ +|-+....+.|+ -++++...|+.+|+
T Consensus 54 ~dP~~SwVAk~l~i~~~~pG~YAi~V~g~-------lp~~i~~~l~~~~i 96 (98)
T cd07973 54 MDPEKSWVARWQRIDKFVPGIYAISVSGR-------LPEDIVEELESRGI 96 (98)
T ss_pred ECCchhHHHHHhCCCCCCCCeEEEEecCc-------CCHHHHHHHHHcCC
Confidence 44455677765 566 898885444443 36778888887765
No 330
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=30.01 E-value=64 Score=27.56 Aligned_cols=41 Identities=12% Similarity=0.143 Sum_probs=28.4
Q ss_pred CHHHHHhcCC-ccceeEEeccCCeE-EEeccCCHHHHHHHHHh
Q 030511 93 NPEWEKSYQY-EIPVLARVLSDGTE-VLMACINRFRIEAWLSQ 133 (176)
Q Consensus 93 D~el~eky~~-~VPVL~i~~idGe~-l~~~~fd~deL~~~L~~ 133 (176)
|.++.+++|. ..|.++....+|+. ..-|..+.++|.+.|+.
T Consensus 208 n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l~~ 250 (251)
T PRK11657 208 NQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIMGP 250 (251)
T ss_pred HHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhCC
Confidence 4457777887 69999854334654 33466688999998864
No 331
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=29.89 E-value=3.2e+02 Score=22.63 Aligned_cols=85 Identities=22% Similarity=0.187 Sum_probs=50.1
Q ss_pred CCCCCceEEEEeCCCCCc-hHHHHHHHHHHhccCCCCCCCCcceEEEEcCCC-----HHHHHhcCCccceeEEeccCCeE
Q 030511 43 SSSSTRKLVLYSKPGCCL-CDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN-----PEWEKSYQYEIPVLARVLSDGTE 116 (176)
Q Consensus 43 ~~~~~~kItLYTkpgC~l-Ce~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD-----~el~eky~~~VPVL~i~~idGe~ 116 (176)
.-...+.|..|+=..||. |...-..|.+.. .+-.+..+.++..+.|+-| ++..++|.. .. .+...
T Consensus 64 ~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~--~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~----~~---~~~~~ 134 (207)
T COG1999 64 DLKGKPSLVFFGYTHCPDVCPTTLAELKALL--KKLGEGEGDDVQVVFITVDPERDTPEVLKKYAE----LN---FDPRW 134 (207)
T ss_pred ccCCCEEEEEeecCCCCccChHHHHHHHHHH--HHhccccCCCEEEEEEEECCCCCCHHHHHHHhc----cc---CCCCe
Confidence 335666788888889985 887776655532 1102133666666666633 568888876 11 23333
Q ss_pred EEeccCCHHHHHHHHHhCCch
Q 030511 117 VLMACINRFRIEAWLSQMSLD 137 (176)
Q Consensus 117 l~~~~fd~deL~~~L~~~~l~ 137 (176)
.++.+ +++++.+...+.+..
T Consensus 135 ~~ltg-~~~~~~~~~k~~~V~ 154 (207)
T COG1999 135 IGLTG-TPEQIEEVAKAYGVF 154 (207)
T ss_pred eeeeC-CHHHHHHHHHHhcce
Confidence 33333 377777777766654
No 332
>PF03477 ATP-cone: ATP cone domain; InterPro: IPR005144 The ATP-cone is an evolutionarily mobile, ATP-binding regulatory domain which is found in a variety of proteins including ribonucleotide reductases, phosphoglycerate kinases and transcriptional regulators []. In ribonucleotide reductase protein R1 (P28903 from SWISSPROT) from Escherichia coli this domain is located at the N terminus, and is composed mostly of helices []. It forms part of the allosteric effector region and contains the general allosteric activity site in a cleft located at the tip of the N-terminal region []. This site binds either ATP (activating) or dATP (inhibitory), with the base bound in a hydrophobic pocket and the phosphates bound to basic residues. Substrate binding to this site is thought to affect enzyme activity by altering the relative positions of the two subunits of ribonucleotide reductase.; PDB: 2XO4_A 1RLR_A 7R1R_B 5R1R_A 2XO5_B 2XAW_A 2R1R_C 2XAY_B 2X0X_C 2XAZ_A ....
Probab=29.66 E-value=1.9e+02 Score=20.11 Aligned_cols=59 Identities=24% Similarity=0.164 Sum_probs=37.5
Q ss_pred cCCeEEEeccCCHHHHHHHHHhCC-----chhHHHHhhhhhhcccccCCCCCC-CCCHHHHHHHHHHHhc
Q 030511 112 SDGTEVLMACINRFRIEAWLSQMS-----LDCVMAYQQLSFLNIVEALPRLSP-RIGVELIQKKIAAALR 175 (176)
Q Consensus 112 idGe~l~~~~fd~deL~~~L~~~~-----l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 175 (176)
-||... +|+.++|...|..++ +++..+++-.+ .+...|..... -++.+.|+..+...|.
T Consensus 6 rdG~~e---~F~~~KI~~~i~~a~~~~~~~~~~~~~~i~~--~V~~~l~~~~~~~is~~eI~~~v~~~L~ 70 (90)
T PF03477_consen 6 RDGRVE---PFDREKIVRAIEKACEASRELSEEDAEEIAS--EVENKLYDSGKEEISTEEIQDIVENALM 70 (90)
T ss_dssp SSSSEE---ES-HHHHHHHHHTTCTTTSTTTST-HHHHHH--HHHTC-ST----TEEHHHHHHHHHHHHH
T ss_pred CCCcEe---eecHHHHHHHHHHHHHhcccccHHHHHHHHH--HHHHHHHhccCCCeeHHHHHHHHHHHHH
Confidence 688764 899999999999999 55555554333 22233444333 5888999988877764
No 333
>COG1905 NuoE NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion]
Probab=28.65 E-value=61 Score=26.71 Aligned_cols=81 Identities=11% Similarity=0.140 Sum_probs=52.2
Q ss_pred CCCCCCceEEEEeCCCCCch--HHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcC----CccceeEEeccCCe
Q 030511 42 SSSSSTRKLVLYSKPGCCLC--DGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQ----YEIPVLARVLSDGT 115 (176)
Q Consensus 42 ~~~~~~~kItLYTkpgC~lC--e~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~----~~VPVL~i~~idGe 115 (176)
..+.....|.+=+..-|++. +.+-+.|++.. ++..-+.+=|.--.|..-+. ..-|++. +||+
T Consensus 72 ~~P~Gr~~i~VC~~t~C~l~Gs~~l~~~l~~~l---------gi~~gett~DG~ftl~~v~ClGaC~~AP~vm---ind~ 139 (160)
T COG1905 72 LKPVGRHHIRVCTGTACHLKGSEALLKALEKKL---------GIKPGETTADGKFTLEPVECLGACGQAPVVM---INDD 139 (160)
T ss_pred cCcCCCeEEEEeCCcHHhhcChHHHHHHHHHHh---------CCCCCCcCCCCeEEEeeeeeecccccCCEEE---ECCc
Confidence 34555667888889999987 33444444432 45444444433333444443 3579999 8997
Q ss_pred EEEeccCCHHHHHHHHHhCCc
Q 030511 116 EVLMACINRFRIEAWLSQMSL 136 (176)
Q Consensus 116 ~l~~~~fd~deL~~~L~~~~l 136 (176)
.. ++.+++++.+.|++..-
T Consensus 140 ~~--~~lt~e~l~eil~~~~~ 158 (160)
T COG1905 140 VY--GRLTPEKLEEILEKLKA 158 (160)
T ss_pred hh--ccCCHHHHHHHHHHHhc
Confidence 64 57999999999987643
No 334
>TIGR03429 arom_pren_DMATS aromatic prenyltransferase, DMATS type. Members of this protein family are mostly fungal enzymes of secondary metabolite production. Characterized or partially characterized members include several examples of dimethylallyltryptophan synthase, a brevianamide F prenyltransferase, LtxC from lyngbyatoxin biosynthesis, and a probable dimethylallyl tyrosine synthase.
Probab=28.24 E-value=37 Score=31.03 Aligned_cols=50 Identities=18% Similarity=0.183 Sum_probs=42.7
Q ss_pred cCCeEEEeccCCHHHHHHHHHhCCchhHHHHhhhhhhcccccCCCCCCCCC
Q 030511 112 SDGTEVLMACINRFRIEAWLSQMSLDCVMAYQQLSFLNIVEALPRLSPRIG 162 (176)
Q Consensus 112 idGe~l~~~~fd~deL~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (176)
.+..+-.||......|.++|..+|-+.-..||.|.|.--. -+|.+.||-.
T Consensus 11 ~~~d~~~WW~~~gp~l~~lL~~agY~~~~Q~~~L~f~~~~-viP~LGp~P~ 60 (406)
T TIGR03429 11 PNEDQRYWWHHTGPMLARLLDAAGYSVHAQYEYLLFLRRH-VLPNLGPYPS 60 (406)
T ss_pred CChhHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-cCCCCCCCCC
Confidence 4445567888889999999999999999999999998876 7899998864
No 335
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=26.88 E-value=2.9e+02 Score=24.21 Aligned_cols=47 Identities=21% Similarity=0.420 Sum_probs=29.8
Q ss_pred CcceEEEEcCCCHHHHHhcCC---ccceeEEeccCCeEEEecc-----CCHHHHHHHHHhC
Q 030511 82 DVDLQVRDITTNPEWEKSYQY---EIPVLARVLSDGTEVLMAC-----INRFRIEAWLSQM 134 (176)
Q Consensus 82 gie~eeIDIdeD~el~eky~~---~VPVL~i~~idGe~l~~~~-----fd~deL~~~L~~~ 134 (176)
+.++ .+|-.+|. ..+.||- ++=|| .||+.++.|+ ++.+|++++|++.
T Consensus 182 ~~pi-~vD~mdN~-~~~~YgA~PeRlyIi----~~gkv~Y~Gg~GP~~y~~~e~r~~L~~~ 236 (237)
T PF00837_consen 182 QCPI-VVDTMDNN-FNKAYGALPERLYII----QDGKVVYKGGPGPFGYSPEELREWLEKY 236 (237)
T ss_pred CCCE-EEEccCCH-HHHHhCCCcceEEEE----ECCEEEEeCCCCCCcCCHHHHHHHHHhc
Confidence 4443 56666443 3455653 33333 5888777644 8899999999874
No 336
>PLN00118 isocitrate dehydrogenase (NAD+)
Probab=26.18 E-value=2e+02 Score=26.71 Aligned_cols=50 Identities=10% Similarity=0.106 Sum_probs=33.2
Q ss_pred CCceEEEEeCCC--CCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCCccc
Q 030511 46 STRKLVLYSKPG--CCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIP 105 (176)
Q Consensus 46 ~~~kItLYTkpg--C~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~~VP 105 (176)
...+|++.-.+| .-.++.+.++|+.. ..+++|+++|+. .+..+++|..+|
T Consensus 40 ~~~~I~vipGDGIGpEV~~aa~~Vl~a~--------~~~ie~~~~~~G--~~~~~~~G~~lp 91 (372)
T PLN00118 40 TPITATLFPGDGIGPEIAESVKQVFTAA--------GVPIEWEEHYVG--TTVDPRTGSFLT 91 (372)
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHHhc--------CCCeEEEEEeCc--HHHHHhcCCcCC
Confidence 336899999877 55788899999864 136778888764 334445554433
No 337
>PRK13189 peroxiredoxin; Provisional
Probab=25.01 E-value=1.1e+02 Score=25.58 Aligned_cols=21 Identities=10% Similarity=-0.096 Sum_probs=15.3
Q ss_pred EEEeCCCCCchHHHHHHHHHH
Q 030511 51 VLYSKPGCCLCDGLKEKLQAA 71 (176)
Q Consensus 51 tLYTkpgC~lCe~aKe~Le~l 71 (176)
..|...||+.|..-...|.+.
T Consensus 41 ~f~pa~fcpvC~tEl~~l~~~ 61 (222)
T PRK13189 41 FSHPADFTPVCTTEFVAFQKR 61 (222)
T ss_pred EEeCCCCCCCCHHHHHHHHHH
Confidence 356799999999766555543
No 338
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=24.89 E-value=2.8e+02 Score=20.45 Aligned_cols=44 Identities=20% Similarity=0.295 Sum_probs=30.3
Q ss_pred HHHHHHHHhccCCCCCCCCcceE-EEEcCCCHHHHHhcCC----------ccceeEEeccCCeEEEe
Q 030511 64 LKEKLQAAFLLSGPDSLHDVDLQ-VRDITTNPEWEKSYQY----------EIPVLARVLSDGTEVLM 119 (176)
Q Consensus 64 aKe~Le~l~~~~~~~~~~gie~e-eIDIdeD~el~eky~~----------~VPVL~i~~idGe~l~~ 119 (176)
+++++++. ++.|. ..| .+.++.++|+. .+|..++...||+....
T Consensus 76 ~~~~~~~~----------~~~~~~~~D--~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~ 130 (146)
T PF08534_consen 76 VREFLKKY----------GINFPVLSD--PDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYR 130 (146)
T ss_dssp HHHHHHHT----------TTTSEEEEE--TTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEE
T ss_pred HHHHHHhh----------CCCceEEec--hHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEE
Confidence 67777664 34333 344 67889999984 58988766689987655
No 339
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=24.39 E-value=73 Score=26.29 Aligned_cols=40 Identities=23% Similarity=0.483 Sum_probs=27.1
Q ss_pred EeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHH
Q 030511 53 YSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWE 97 (176)
Q Consensus 53 YTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~ 97 (176)
++.|+|+..+.+++.+++.. ....++.=..++|..||.|-
T Consensus 121 Lt~p~c~~~~~L~~dV~~aL-----~~l~gV~~V~V~l~~dp~W~ 160 (174)
T TIGR03406 121 LTAPGCGMGPVLVEDVEDKV-----LAVPNVDEVEVELVFDPPWS 160 (174)
T ss_pred eCCCCCcHHHHHHHHHHHHH-----HhCCCceeEEEEEEecCCCC
Confidence 47899999999888877753 12235554556777776553
No 340
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=24.21 E-value=3.9e+02 Score=23.12 Aligned_cols=87 Identities=13% Similarity=0.208 Sum_probs=65.2
Q ss_pred CCCCceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCCc-cceeEEeccCCeEEEe---
Q 030511 44 SSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYE-IPVLARVLSDGTEVLM--- 119 (176)
Q Consensus 44 ~~~~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~~-VPVL~i~~idGe~l~~--- 119 (176)
+.+.+-|.-|.+|+=.-|.-+-.-|+.++ ...-+..|..||...-|=+..+.+.. +|.|.. +.||...-+
T Consensus 82 ~kS~kVVcHFY~~~f~RCKimDkhLe~LA-----k~h~eTrFikvnae~~PFlv~kL~IkVLP~v~l-~k~g~~~D~iVG 155 (211)
T KOG1672|consen 82 KKSEKVVCHFYRPEFFRCKIMDKHLEILA-----KRHVETRFIKVNAEKAPFLVTKLNIKVLPTVAL-FKNGKTVDYVVG 155 (211)
T ss_pred hcCceEEEEEEcCCCcceehHHHHHHHHH-----HhcccceEEEEecccCceeeeeeeeeEeeeEEE-EEcCEEEEEEee
Confidence 45566788899999777777777776653 12236788999998888899999986 698873 488875333
Q ss_pred ----c---cCCHHHHHHHHHhCCc
Q 030511 120 ----A---CINRFRIEAWLSQMSL 136 (176)
Q Consensus 120 ----~---~fd~deL~~~L~~~~l 136 (176)
| .|+.+.|+..|...|.
T Consensus 156 F~dLGnkDdF~te~LE~rL~~S~v 179 (211)
T KOG1672|consen 156 FTDLGNKDDFTTETLENRLAKSGV 179 (211)
T ss_pred HhhcCCCCcCcHHHHHHHHhhccc
Confidence 2 3889999999998886
No 341
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=23.69 E-value=3.5e+02 Score=27.19 Aligned_cols=114 Identities=16% Similarity=0.228 Sum_probs=55.9
Q ss_pred eCCCCCchHHHHHH------HHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcC--------C-ccceeEEeccCCeEEE
Q 030511 54 SKPGCCLCDGLKEK------LQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQ--------Y-EIPVLARVLSDGTEVL 118 (176)
Q Consensus 54 TkpgC~lCe~aKe~------Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~--------~-~VPVL~i~~idGe~l~ 118 (176)
+-.+||+|+...+. +.++. ..+|--..||=++-|++-+.|. . .=|.-+....||+.++
T Consensus 51 Gys~CHWChVM~~ESf~d~eiA~~l-------N~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWPLtVfLTPd~kPFf 123 (667)
T COG1331 51 GYSTCHWCHVMAHESFEDPEIAAIL-------NENFVPVKVDREERPDVDSLYMNASQAITGQGGWPLTVFLTPDGKPFF 123 (667)
T ss_pred ccccccchHHHhhhcCCCHHHHHHH-------HhCceeeeEChhhccCHHHHHHHHHHHhccCCCCceeEEECCCCceee
Confidence 36799999976542 11110 1144444566667776555552 2 2455444458998766
Q ss_pred ecc-CCHH------HHHHHHHh------CCchhHH--HHhhhhhhcccccCCCCCCCCCHHHHHHHHHHHhc
Q 030511 119 MAC-INRF------RIEAWLSQ------MSLDCVM--AYQQLSFLNIVEALPRLSPRIGVELIQKKIAAALR 175 (176)
Q Consensus 119 ~~~-fd~d------eL~~~L~~------~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (176)
-+. |.++ =+...|.+ ..=+.+. |-.-++-++-. ..|.....++.+.|.+....+.+
T Consensus 124 agTY~P~e~r~g~pGf~~lL~~i~~~W~edr~~~~~~a~~~~~~l~~~-~~~~~~~~l~~~~l~~~~~~l~~ 194 (667)
T COG1331 124 AGTYFPKEDRYGRPGFKQLLEAIRETWREDREELLQSAERVLEALEGL-ARPSAGEELDEEVLDRAAEALAR 194 (667)
T ss_pred eeeecCCcccCCCcCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-cCCCccccCChHHHHHHHHHHHH
Confidence 544 4333 12222211 1111111 11112222221 15666777788877776665543
No 342
>TIGR01958 nuoE_fam NADH-quinone oxidoreductase, E subunit. This model describes the E chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. This model does not identify proteins from chloroplast and cyanobacteria.
Probab=23.04 E-value=1.5e+02 Score=23.27 Aligned_cols=28 Identities=11% Similarity=0.242 Sum_probs=22.3
Q ss_pred CccceeEEeccCCeEEEeccCCHHHHHHHHHhC
Q 030511 102 YEIPVLARVLSDGTEVLMACINRFRIEAWLSQM 134 (176)
Q Consensus 102 ~~VPVL~i~~idGe~l~~~~fd~deL~~~L~~~ 134 (176)
..-|++. +||+ .+++.+++++.+.|++.
T Consensus 120 ~~aP~v~---V~~~--~y~~vt~e~v~~il~~~ 147 (148)
T TIGR01958 120 GNAPVMM---INDD--YYEFLTPEKLDELLERY 147 (148)
T ss_pred CCCCEEE---ECCE--EeCCCCHHHHHHHHHhc
Confidence 3579999 6774 46899999999998753
No 343
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=22.06 E-value=60 Score=24.58 Aligned_cols=23 Identities=17% Similarity=0.469 Sum_probs=18.4
Q ss_pred EEcCCCHHHHHhcCC-ccceeEEe
Q 030511 88 RDITTNPEWEKSYQY-EIPVLARV 110 (176)
Q Consensus 88 IDIdeD~el~eky~~-~VPVL~i~ 110 (176)
.+|.=||.++++|+. .||+++..
T Consensus 55 ~~v~IdP~~F~~y~I~~VPa~V~~ 78 (113)
T PF09673_consen 55 PGVQIDPRLFRQYNITAVPAFVVV 78 (113)
T ss_pred cceeEChhHHhhCCceEcCEEEEE
Confidence 445559999999998 59999853
No 344
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=22.06 E-value=2.2e+02 Score=26.29 Aligned_cols=86 Identities=17% Similarity=0.246 Sum_probs=46.8
Q ss_pred ceEEEEeCCC-CCch-HHHHHHHHHHhccCCCCCCCCcceEEEEcCCCHHHHHhcCCccceeEEeccCCeEEEe----cc
Q 030511 48 RKLVLYSKPG-CCLC-DGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGTEVLM----AC 121 (176)
Q Consensus 48 ~kItLYTkpg-C~lC-e~aKe~Le~l~~~~~~~~~~gie~eeIDIdeD~el~eky~~~VPVL~i~~idGe~l~~----~~ 121 (176)
|+|-+|+.+| |.-| ..+...|+... .-.|.+.-|+.+.-..+-+....=+|+. .+|.-..+ ++
T Consensus 1 mnVlVY~G~G~~~~sv~~~~~~Lr~~l---------~p~y~V~~v~~~~l~~~pw~~~~~LlV~--PGG~d~~y~~~l~~ 69 (367)
T PF09825_consen 1 MNVLVYNGPGTSPESVRHTLESLRRLL---------SPHYAVIPVTADELLNEPWQSKCALLVM--PGGADLPYCRSLNG 69 (367)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhc---------CCCeEEEEeCHHHhhcCccccCCcEEEE--CCCcchHHHHhhCh
Confidence 5799999999 7777 45556665542 2246666665432211222222223331 45553322 23
Q ss_pred CCHHHHHHHHHhCCc---hhHHHHhh
Q 030511 122 INRFRIEAWLSQMSL---DCVMAYQQ 144 (176)
Q Consensus 122 fd~deL~~~L~~~~l---~~~~~~~~ 144 (176)
-....|++++++.|- -|.=||--
T Consensus 70 ~g~~~Ir~fV~~GG~YlGiCAGaY~a 95 (367)
T PF09825_consen 70 EGNRRIRQFVENGGGYLGICAGAYYA 95 (367)
T ss_pred HHHHHHHHHHHcCCcEEEECcchhhh
Confidence 345689999998664 35555543
No 345
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=21.90 E-value=81 Score=24.36 Aligned_cols=30 Identities=17% Similarity=0.106 Sum_probs=18.7
Q ss_pred HhcCC-ccceeEEeccCCeEEEeccCCHHHHHHHH
Q 030511 98 KSYQY-EIPVLARVLSDGTEVLMACINRFRIEAWL 131 (176)
Q Consensus 98 eky~~-~VPVL~i~~idGe~l~~~~fd~deL~~~L 131 (176)
.++|. .+|.++ +||+. +||.-+.+.+...|
T Consensus 161 ~~~gi~gvPtfv---v~g~~-~~G~~~l~~~~~~l 191 (192)
T cd03022 161 IARGVFGVPTFV---VDGEM-FWGQDRLDMLEEAL 191 (192)
T ss_pred HHcCCCcCCeEE---ECCee-ecccccHHHHHHHh
Confidence 34564 699999 78874 35555555555444
No 346
>PF04239 DUF421: Protein of unknown function (DUF421); InterPro: IPR007353 This family of uncharacterised proteins is known as YDFR family; PDB: 3C6F_D.
Probab=21.54 E-value=84 Score=23.25 Aligned_cols=36 Identities=17% Similarity=0.125 Sum_probs=21.7
Q ss_pred ccceeEEeccCCeEEE----eccCCHHHHHHHHHhCCchhHH
Q 030511 103 EIPVLARVLSDGTEVL----MACINRFRIEAWLSQMSLDCVM 140 (176)
Q Consensus 103 ~VPVL~i~~idGe~l~----~~~fd~deL~~~L~~~~l~~~~ 140 (176)
.-|++++ .||+... ..+++.++|...|+..|+..+-
T Consensus 6 g~p~~Li--~dG~i~~~~l~~~~it~~dl~~~LR~~gi~~l~ 45 (99)
T PF04239_consen 6 GKPTVLI--RDGKIDEDNLRRARITEEDLLSALREQGIESLS 45 (99)
T ss_dssp ---EEEE--ETTEE-HHHHHHTT--HHHHHHHHHHTT--SGG
T ss_pred CCcEEEE--ECCEECHHHHhHcCCCHHHHHHHHHhhCCCCHH
Confidence 3577764 6897532 2679999999999999987653
No 347
>PHA00729 NTP-binding motif containing protein
Probab=21.38 E-value=5.3e+02 Score=22.15 Aligned_cols=24 Identities=13% Similarity=0.086 Sum_probs=20.0
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHH
Q 030511 48 RKLVLYSKPGCCLCDGLKEKLQAA 71 (176)
Q Consensus 48 ~kItLYTkpgC~lCe~aKe~Le~l 71 (176)
..|.+++.||++--.-++.+.+.+
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 379999999999888888877764
No 348
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=21.03 E-value=1.8e+02 Score=20.89 Aligned_cols=46 Identities=4% Similarity=-0.017 Sum_probs=30.2
Q ss_pred EcCCCHHHHHhcCCccceeEEe--ccCCeEEE-eccCCHHHHHHHHHhC
Q 030511 89 DITTNPEWEKSYQYEIPVLARV--LSDGTEVL-MACINRFRIEAWLSQM 134 (176)
Q Consensus 89 DIdeD~el~eky~~~VPVL~i~--~idGe~l~-~~~fd~deL~~~L~~~ 134 (176)
=+..++++..+++...|.++.- +.++...+ -|.++.+.|.+|+..+
T Consensus 52 ~~~~~~~~~~~~~~~~~~i~l~~~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 52 FATFDSKVAKKLGLKMNEVDFYEPFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred EEECcHHHHHHcCCCCCcEEEeCCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 3456778888888777766533 12333334 3567999999998765
No 349
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=20.83 E-value=4.5e+02 Score=23.24 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=22.8
Q ss_pred CCccceeEEeccCCeEEEeccCCHHHHHHHHHh
Q 030511 101 QYEIPVLARVLSDGTEVLMACINRFRIEAWLSQ 133 (176)
Q Consensus 101 ~~~VPVL~i~~idGe~l~~~~fd~deL~~~L~~ 133 (176)
...+|++=+ .-|+.-|...++.+++.+.|++
T Consensus 90 ~~~~PilGI--N~G~lGFL~~~~~~~~~~~l~~ 120 (296)
T PRK04539 90 PRAVPIIGI--NQGHLGFLTQIPREYMTDKLLP 120 (296)
T ss_pred ccCCCEEEE--ecCCCeEeeccCHHHHHHHHHH
Confidence 357998863 5677666677888988877765
No 350
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=20.71 E-value=2e+02 Score=20.28 Aligned_cols=32 Identities=16% Similarity=0.059 Sum_probs=26.9
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCcceEEEEcC
Q 030511 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT 91 (176)
Q Consensus 50 ItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gie~eeIDId 91 (176)
|.+|+.|||+-=.-++.+.+.. ++++..+|-.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l----------~~~~~~i~~~ 32 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL----------GFPFIEIDGS 32 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT----------TSEEEEEETT
T ss_pred CEEECcCCCCeeHHHHHHHhhc----------cccccccccc
Confidence 5789999999999998888776 7778888876
No 351
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=20.20 E-value=3.6e+02 Score=21.72 Aligned_cols=65 Identities=12% Similarity=0.196 Sum_probs=46.0
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhccCCCCCCCCc-ceEEEEcCCCHHHHHhcCCccceeEEeccCCeE
Q 030511 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDV-DLQVRDITTNPEWEKSYQYEIPVLARVLSDGTE 116 (176)
Q Consensus 47 ~~kItLYTkpgC~lCe~aKe~Le~l~~~~~~~~~~gi-e~eeIDIdeD~el~eky~~~VPVL~i~~idGe~ 116 (176)
..-|+-|++.|=+.|-..-+.|.+.+. .-.++ .+-.+||++-|++-+.|....|.-+-=|-+++.
T Consensus 21 rvvViRFG~d~d~~Cm~mDeiL~~~a~-----~v~~~a~IY~vDi~~Vpdfn~~yel~dP~tvmFF~rnkh 86 (133)
T PF02966_consen 21 RVVVIRFGRDWDPVCMQMDEILYKIAE-----KVKNFAVIYLVDIDEVPDFNQMYELYDPCTVMFFFRNKH 86 (133)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHH-----HHTTTEEEEEEETTTTHCCHHHTTS-SSEEEEEEETTEE
T ss_pred eEEEEEeCCCCCccHHHHHHHHHHHHH-----HhhcceEEEEEEcccchhhhcccccCCCeEEEEEecCeE
Confidence 345788999999999999999988742 11233 577899999999999998878865422335554
Done!