BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030512
(176 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q941D3|PAP8_ARATH Probable plastid-lipid-associated protein 8, chloroplastic
OS=Arabidopsis thaliana GN=PAP8 PE=2 SV=1
Length = 239
Score = 217 bits (553), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 112/178 (62%), Positives = 136/178 (76%), Gaps = 7/178 (3%)
Query: 1 MAAAAFSLTLSSPVSKPHTFCTSYYSKPINASFSASLPCK----RSPRTALKIVRAVSIS 56
MAA A SLT++S S+P T S S+ +N S+P K RS R L +V +VS
Sbjct: 1 MAATASSLTIASSFSEPRTQIHS--SRRLNLPLQYSIPYKVLRSRSRRLGL-VVSSVSAP 57
Query: 57 SPDLRTGPDDLVASILSKVNQSDGGVSLAKEEHKEVAEVAQELQKYCVEAPVKCPLIFGE 116
+ +LRTGPDDL++++LSKV SDGGV+L+ E+HKEVA+VA ELQKYCV+ PVK PLIFG+
Sbjct: 58 NVELRTGPDDLISTLLSKVANSDGGVTLSPEQHKEVAQVAGELQKYCVKEPVKNPLIFGD 117
Query: 117 WDVVYCSVPTSPGGGYRSAFGRLFFKTKEMIQAVEAPDTVRNKVSFTALGFLDGEVSL 174
W+VVYCS PTSPGGGYRS GRLFFKTKEMIQA++APD VRNKVS A GFLDG+VSL
Sbjct: 118 WEVVYCSRPTSPGGGYRSVIGRLFFKTKEMIQAIDAPDIVRNKVSINAFGFLDGDVSL 175
>sp|Q7DM58|AB4C_ARATH ABC transporter C family member 4 OS=Arabidopsis thaliana GN=ABCC4
PE=1 SV=2
Length = 1516
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 17/84 (20%)
Query: 38 PCKRSPRTALKIVRAVSISSPDLRTGPDDLVASILSKVNQSDGGVSLAKEEHKEVAEVAQ 97
P SPRT S+ SP L D+ + S L DG L KEE +E +V+
Sbjct: 891 PHASSPRT--------SMESPHLSDLNDEHIKSFLGSHIVEDGS-KLIKEEERETGQVSL 941
Query: 98 ELQK-YCVEAPVKCPLIFGEWDVV 120
+ K YC EA +G W +V
Sbjct: 942 GVYKQYCTEA-------YGWWGIV 958
>sp|Q9LZJ5|AB14C_ARATH ABC transporter C family member 14 OS=Arabidopsis thaliana
GN=ABCC14 PE=1 SV=1
Length = 1539
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 9/74 (12%)
Query: 48 KIVRAVSISSPDLRTGPDDLVASILSKVNQSDGGVSLAKEEHKEVAEVAQELQK-YCVEA 106
+++R S+ SP L D+ + S L N + G L KEE +EV +V+ ++ K Y EA
Sbjct: 916 RVLRTTSMESPRLSELNDESIKSFLGS-NIPEDGSRLIKEEEREVGQVSFQVYKLYSTEA 974
Query: 107 PVKCPLIFGEWDVV 120
+G W ++
Sbjct: 975 -------YGWWGMI 981
>sp|Q9LX99|GRIMP_ARATH Geminivirus Rep-interacting motor protein OS=Arabidopsis thaliana
GN=GRIMP PE=1 SV=1
Length = 1273
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 27 KPINASFSASLPCKRSPRTALKIVRAVSISSPDLRTGPDDLVASILSKVNQSDGGVSLAK 86
+P +S +AS RT ++R SIS+P L P +AS KVN V LAK
Sbjct: 19 EPRKSSSNASFAESTGHRTTGPLLRRNSISTPSL--PPKQAIAS---KVNGLKEKVKLAK 73
Query: 87 EEHKEVAEVAQELQKY 102
E++ E+ + A +LQ+Y
Sbjct: 74 EDYLELRQEATDLQEY 89
>sp|Q9K809|SPPA_BACHD Putative signal peptide peptidase SppA OS=Bacillus halodurans
(strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153
/ C-125) GN=sppA PE=3 SV=1
Length = 331
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 61 RTGPDDLVASILSKVNQSDGGVSLAKEEHKEVAEVAQELQK 101
+ G D +A I+ +VN GGV + E HK+V E+ Q+ +K
Sbjct: 93 KAGEDPNIAGIILQVNTPGGGVLESAEIHKQVEEIVQDSEK 133
>sp|O34525|SPPA_BACSU Putative signal peptide peptidase SppA OS=Bacillus subtilis (strain
168) GN=sppA PE=1 SV=1
Length = 335
Score = 30.4 bits (67), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 61 RTGPDDLVASILSKVNQSDGGVSLAKEEHKEVAEVAQELQK 101
R D V I+ KVN GGV + E HK++ E+ +E +K
Sbjct: 95 RAKDDKTVKGIVLKVNSPGGGVYESAEIHKKLEEIKKETKK 135
>sp|Q9CWS0|DDAH1_MOUSE N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 OS=Mus musculus
GN=Ddah1 PE=1 SV=3
Length = 285
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 42 SPRTALKIVRAVSISSPDLRTGPDDLVASILSKVNQSDGGVSLAK--EEHKEVAEVAQEL 99
S + ALKI++ +S D T PDD+ A+ + S G V L + EE+ E A+V ++L
Sbjct: 193 SAQKALKIMQQMSDHRYDKLTVPDDMAANCIYLNIPSKGHVLLHRTPEEYPESAKVYEKL 252
Query: 100 QKYCV 104
+ + +
Sbjct: 253 KDHLL 257
>sp|O08557|DDAH1_RAT N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 OS=Rattus
norvegicus GN=Ddah1 PE=1 SV=3
Length = 285
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 42 SPRTALKIVRAVSISSPDLRTGPDDLVASILSKVNQSDGGVSLAK--EEHKEVAEVAQEL 99
S + ALKI++ +S D T PDD+ A+ + S G V L + EE+ E A+V ++L
Sbjct: 193 SAQKALKIMQQMSDHRYDKLTVPDDMAANCIYLNIPSKGHVLLHRTPEEYPESAKVYEKL 252
Query: 100 QKYCV 104
+ + +
Sbjct: 253 KDHLL 257
>sp|B3H672|PP317_ARATH Pentatricopeptide repeat-containing protein At4g17616
OS=Arabidopsis thaliana GN=At4g17616 PE=2 SV=1
Length = 674
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 6 FSLTLSSPVSKPHTFCTSYYSKPINASFSASLPCKRSPRTALK 48
S L S SKP FCTS +N S+ + K+ TALK
Sbjct: 24 ISWVLCSRTSKPSLFCTSVKPARLNWEVSSQVILKKKLETALK 66
>sp|O74429|VIP1_SCHPO Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate
kinase OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=asp1 PE=1 SV=1
Length = 920
Score = 30.0 bits (66), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 19/137 (13%)
Query: 44 RTALKIVRAVSISSPDLRTGPDD---LVASILSKVNQSDGGVSLAKEEHKEVAEVAQE-- 98
R L I+ A+ +S+P D + +L + + G+ + + EV + ++
Sbjct: 124 RLVLNILDAIRVSTPQRLICSRDGGPKINKVLEEKLRRKFGIEITEVPTPEVKMLDEDTL 183
Query: 99 ------LQKYCVEAPVKCPLIFGEWDVVYCSVPTSPGGGYRSAFGRLFFKTKEMIQAVEA 152
++K VE PV +GE +Y P S GGG R F ++ K+ + + A
Sbjct: 184 SVDGKIIKKPYVEKPV-----YGEDHNIYIYFPKSVGGGGRKLFRKVANKSSDYDPDLCA 238
Query: 153 PDTVRNKVSFTALGFLD 169
P R + SF F++
Sbjct: 239 P---RTEGSFIYEEFMN 252
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,427,406
Number of Sequences: 539616
Number of extensions: 2283951
Number of successful extensions: 5943
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 5934
Number of HSP's gapped (non-prelim): 18
length of query: 176
length of database: 191,569,459
effective HSP length: 110
effective length of query: 66
effective length of database: 132,211,699
effective search space: 8725972134
effective search space used: 8725972134
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)