Query 030512
Match_columns 176
No_of_seqs 91 out of 93
Neff 3.6
Searched_HMMs 29240
Date Tue Mar 26 00:14:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030512.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030512hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a6s_A Toxin YOEB; YEFM, antit 83.4 1.1 3.7E-05 29.7 3.4 18 86-104 21-38 (84)
2 1z8m_A Conserved hypothetical 82.2 0.54 1.9E-05 31.5 1.6 15 90-104 25-39 (88)
3 3g5o_B Uncharacterized protein 79.9 1.7 5.8E-05 31.0 3.6 20 84-104 33-53 (102)
4 2khe_A Toxin RELE, toxin-like 77.7 3.4 0.00012 26.6 4.3 16 85-100 19-34 (89)
5 3oei_C RELK (toxin RV3358); to 72.9 3.1 0.00011 30.2 3.4 32 85-118 32-69 (96)
6 2otr_A Hypothetical protein HP 68.3 5.7 0.00019 27.0 3.8 13 90-102 25-37 (98)
7 1wmi_A RELE, hypothetical prot 67.2 3 0.0001 26.9 2.1 19 85-104 19-37 (90)
8 3bpq_B Toxin RELE3; protein to 62.8 12 0.00041 24.1 4.4 19 85-103 17-35 (88)
9 4fxi_A MRNA interferase RELE; 62.3 12 0.00042 26.7 4.7 20 84-104 18-37 (95)
10 1ud0_A HSC70, 70 kDa heat-shoc 37.0 36 0.0012 23.9 3.8 14 88-101 55-68 (113)
11 1uxc_A FRUR (1-57), fructose r 36.5 48 0.0016 21.8 4.1 30 71-100 17-46 (65)
12 3fsi_A RT, reverse transcripta 34.3 33 0.0011 27.3 3.5 42 80-121 39-90 (255)
13 3p42_A Predicted protein; beta 32.9 43 0.0015 27.5 4.0 67 58-126 48-128 (236)
14 3o39_A Periplasmic protein rel 30.6 30 0.001 25.6 2.5 26 77-102 11-36 (108)
15 1imu_A Hypothetical protein HI 30.4 51 0.0017 23.4 3.7 27 78-104 6-32 (107)
16 2p32_A Heat shock 70 kDa prote 29.6 94 0.0032 22.3 5.0 37 64-100 23-59 (120)
17 3itf_A Periplasmic adaptor pro 28.7 38 0.0013 26.2 2.9 26 77-102 39-64 (145)
18 2kvu_A MKL/myocardin-like prot 27.3 1.1E+02 0.0039 21.6 4.9 36 63-104 30-65 (75)
19 2cu9_A Spcia1, histone chapero 25.8 40 0.0014 27.1 2.6 19 106-127 32-50 (161)
20 3v26_X ORF3, ORF95, probable s 25.4 62 0.0021 22.9 3.4 27 78-104 6-32 (101)
21 3op9_A PLI0006 protein; struct 24.5 1.2E+02 0.0041 20.5 4.6 31 68-104 83-113 (114)
22 2l8n_A Transcriptional repress 24.0 1.1E+02 0.0037 20.2 4.1 17 84-100 36-52 (67)
23 1rw3_A POL polyprotein; RNA an 23.8 41 0.0014 29.1 2.5 42 80-121 43-94 (455)
24 2doa_A RNA polymerase II elong 23.7 53 0.0018 24.6 2.8 34 69-106 29-62 (104)
25 1qbj_A Protein (double-strande 23.5 1.7E+02 0.0056 20.1 5.2 53 64-120 8-70 (81)
26 3oeo_A Spheroplast protein Y; 23.2 43 0.0015 25.3 2.3 25 77-101 27-51 (138)
27 2p5i_A BH3822 protein; PFAM030 23.1 90 0.0031 25.7 4.3 42 63-104 231-275 (288)
28 3u5c_T 40S ribosomal protein S 22.9 1.1E+02 0.0037 24.1 4.5 36 64-99 97-139 (144)
29 2zd1_A Reverse transcriptase/r 22.7 1.3E+02 0.0043 26.9 5.5 42 80-121 24-77 (557)
30 2ywq_A Protein Y, ribosomal su 22.1 47 0.0016 23.3 2.1 27 78-104 7-33 (105)
31 1yrv_A Ubiquitin-conjugating l 21.5 1.6E+02 0.0053 22.7 5.2 56 76-133 12-73 (169)
32 3v2d_H 50S ribosomal protein L 21.4 59 0.002 25.9 2.8 30 82-111 131-160 (180)
33 3r8s_G 50S ribosomal protein L 21.1 61 0.0021 25.7 2.8 30 82-111 130-159 (176)
34 3lof_A Heat shock 70 kDa prote 21.0 1.5E+02 0.0051 20.8 4.7 10 68-77 46-55 (113)
35 4fyl_A Ribosome hibernation pr 20.6 64 0.0022 22.5 2.6 27 78-104 6-32 (95)
No 1
>2a6s_A Toxin YOEB; YEFM, antitoxin, addiction modules, RNAse, inhibitor; 1.77A {Escherichia coli} SCOP: d.298.1.1 PDB: 2a6r_A 2a6q_E
Probab=83.43 E-value=1.1 Score=29.74 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHhhhCC
Q 030512 86 KEEHKEVAEVAQELQKYCV 104 (176)
Q Consensus 86 ~e~r~~V~~~i~qLE~~np 104 (176)
+...++|.+++..|.. ||
T Consensus 21 ~~~~~~i~~~i~~l~~-~P 38 (84)
T 2a6s_A 21 KRIVKKINELIKDTRR-TP 38 (84)
T ss_dssp HHHHHHHHHHHHHHHH-ST
T ss_pred HHHHHHHHHHHHHHHh-CC
Confidence 5556888888888865 56
No 2
>1z8m_A Conserved hypothetical protein HP0894; structural genomics, helicobac pylori, unknown function; NMR {Helicobacter pylori} SCOP: d.298.1.2
Probab=82.20 E-value=0.54 Score=31.50 Aligned_cols=15 Identities=27% Similarity=0.135 Sum_probs=10.7
Q ss_pred HHHHHHHHHHhhhCC
Q 030512 90 KEVAEVAQELQKYCV 104 (176)
Q Consensus 90 ~~V~~~i~qLE~~np 104 (176)
+++.+++..|..-||
T Consensus 25 ~~~~~~i~~l~~~~p 39 (88)
T 1z8m_A 25 SVLNEVILTLRKKEP 39 (88)
T ss_dssp HHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHhcCCC
Confidence 567888888865466
No 3
>3g5o_B Uncharacterized protein RV2866; heterotetramer, 1:1 ratio, structural genomics, PSI-2, prote structure initiative; 2.00A {Mycobacterium tuberculosis}
Probab=79.89 E-value=1.7 Score=30.95 Aligned_cols=20 Identities=25% Similarity=0.135 Sum_probs=15.3
Q ss_pred CCHHHHHHHHHHH-HHHhhhCC
Q 030512 84 LAKEEHKEVAEVA-QELQKYCV 104 (176)
Q Consensus 84 aS~e~r~~V~~~i-~qLE~~np 104 (176)
+.+..+++|.+.| .+|+ .||
T Consensus 33 L~~~~~~~I~~~I~~~L~-~~P 53 (102)
T 3g5o_B 33 LPPRILAAVVEFAFGDLS-REP 53 (102)
T ss_dssp SCHHHHHHHHHHHTTHHH-HCT
T ss_pred CCHHHHHHHHHHHHHHHH-hCc
Confidence 4677889999999 8885 466
No 4
>2khe_A Toxin RELE, toxin-like protein; toxin-antitoxin, RNAse, plasmid, hydrolase, structural genomics, NPPSFA; NMR {Thermus thermophilus}
Probab=77.66 E-value=3.4 Score=26.60 Aligned_cols=16 Identities=13% Similarity=0.189 Sum_probs=12.0
Q ss_pred CHHHHHHHHHHHHHHh
Q 030512 85 AKEEHKEVAEVAQELQ 100 (176)
Q Consensus 85 S~e~r~~V~~~i~qLE 100 (176)
.++.+++|.+.+.+|.
T Consensus 19 ~~~~~~~i~~~i~~l~ 34 (89)
T 2khe_A 19 DREVARRILRFLRERV 34 (89)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhh
Confidence 4667788888888774
No 5
>3oei_C RELK (toxin RV3358); toxin-antitoxin systems, protein-protein complex, tuberculos structural genomics consortium, protein binding; HET: MLZ FLC; 2.15A {Mycobacterium tuberculosis} SCOP: d.298.1.0
Probab=72.90 E-value=3.1 Score=30.23 Aligned_cols=32 Identities=16% Similarity=0.451 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHHHhhhCC------CCCCCCCCccceEE
Q 030512 85 AKEEHKEVAEVAQELQKYCV------EAPVKCPLIFGEWD 118 (176)
Q Consensus 85 S~e~r~~V~~~i~qLE~~np------p~Pl~spLL~G~W~ 118 (176)
.+..+++|.++|.+|+. || |+||+.. +.|-|.
T Consensus 32 dk~~~krI~~~I~~l~~-nP~~g~gK~e~Lkg~-l~g~~s 69 (96)
T 3oei_C 32 DRKTARRITRLIGEIQR-DPFSGIGKPEPLQGE-LSGYWS 69 (96)
T ss_dssp CHHHHHHHHHHHHHHHH-CTTSSTTCCEECCGG-GTTCEE
T ss_pred CHHHHHHHHHHHHHHHh-CCCcCCCchhhcCCC-CCCcEE
Confidence 67788899999998874 55 2466553 244443
No 6
>2otr_A Hypothetical protein HP0892; anti-parallel beta sheet, structural genomics, unknown funct; NMR {Helicobacter pylori}
Probab=68.32 E-value=5.7 Score=27.03 Aligned_cols=13 Identities=23% Similarity=0.151 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhhh
Q 030512 90 KEVAEVAQELQKY 102 (176)
Q Consensus 90 ~~V~~~i~qLE~~ 102 (176)
++|.+++.+|...
T Consensus 25 ~~i~~~i~~L~~~ 37 (98)
T 2otr_A 25 KLLYKVVGNLATE 37 (98)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC
Confidence 5788888888665
No 7
>1wmi_A RELE, hypothetical protein PHS013; toxin-antitoxin complex, hydrolase-hydrolase inhibitor compl; 2.30A {Pyrococcus horikoshii} SCOP: d.298.1.2
Probab=67.24 E-value=3 Score=26.91 Aligned_cols=19 Identities=16% Similarity=0.069 Sum_probs=14.0
Q ss_pred CHHHHHHHHHHHHHHhhhCC
Q 030512 85 AKEEHKEVAEVAQELQKYCV 104 (176)
Q Consensus 85 S~e~r~~V~~~i~qLE~~np 104 (176)
.+..+++|.+.+..|+. +|
T Consensus 19 ~~~~~~~i~~~i~~L~~-~P 37 (90)
T 1wmi_A 19 PKAHYRRFLEFRDILEY-EP 37 (90)
T ss_dssp CHHHHHHHHHHHHHHTT-CS
T ss_pred CHHHHHHHHHHHHHHHh-CC
Confidence 46677788888888855 45
No 8
>3bpq_B Toxin RELE3; protein toxin-antitoxin complex; 2.20A {Methanocaldococcus jannaschii}
Probab=62.83 E-value=12 Score=24.12 Aligned_cols=19 Identities=16% Similarity=0.123 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHHHHhhhC
Q 030512 85 AKEEHKEVAEVAQELQKYC 103 (176)
Q Consensus 85 S~e~r~~V~~~i~qLE~~n 103 (176)
.+..++.+.+++.+++.+.
T Consensus 17 ~~~~~~~i~~~i~~~~~l~ 35 (88)
T 3bpq_B 17 PGHIRKRIKLIIEECQNSN 35 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHhcc
Confidence 4667788888888887653
No 9
>4fxi_A MRNA interferase RELE; toxin/antitoxin system, toxin, nuclease, translational contr response, RELB, ribosome, B-ME on Cys50; HET: CME; 1.80A {Escherichia coli} PDB: 4fxe_D 3kha_A* 4fxh_A* 2kc8_A 2kc9_A 3kiq_y* 3kis_y* 3kiu_y* 3kix_y*
Probab=62.34 E-value=12 Score=26.66 Aligned_cols=20 Identities=10% Similarity=0.129 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHHHHHHhhhCC
Q 030512 84 LAKEEHKEVAEVAQELQKYCV 104 (176)
Q Consensus 84 aS~e~r~~V~~~i~qLE~~np 104 (176)
+.+.++++|.+.+.+|.. ||
T Consensus 18 Ld~~~~~ri~~~l~~l~~-nP 37 (95)
T 4fxi_A 18 LGSTVREQLKKKLVEVLE-SP 37 (95)
T ss_dssp SCHHHHHHHHHHHHHHHH-SC
T ss_pred CCHHHHHHHHHHHHHHhh-CC
Confidence 467899999999998854 66
No 10
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1
Probab=36.96 E-value=36 Score=23.88 Aligned_cols=14 Identities=36% Similarity=0.520 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHhh
Q 030512 88 EHKEVAEVAQELQK 101 (176)
Q Consensus 88 ~r~~V~~~i~qLE~ 101 (176)
+.++|.+.+.+|+.
T Consensus 55 d~~~i~~~~~~L~~ 68 (113)
T 1ud0_A 55 EKEEFEHQQKELEK 68 (113)
T ss_dssp HHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 34444444444443
No 11
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=36.50 E-value=48 Score=21.83 Aligned_cols=30 Identities=13% Similarity=0.122 Sum_probs=21.6
Q ss_pred HHHhhccCCCCccCCHHHHHHHHHHHHHHh
Q 030512 71 ILSKVNQSDGGVSLAKEEHKEVAEVAQELQ 100 (176)
Q Consensus 71 LL~aIagtdRG~~aS~e~r~~V~~~i~qLE 100 (176)
+=..+.|.......+++.+++|.+++++|.
T Consensus 17 VSrvLng~~~~~~vs~et~~rI~~aa~~lg 46 (65)
T 1uxc_A 17 ASYVINGKAKQYRVSDKTVEKVMAVVREHN 46 (65)
T ss_dssp HHHHHHTCTTTTTCTTHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHhC
Confidence 334445654334689999999999998883
No 12
>3fsi_A RT, reverse transcriptase domain; transferase/DNA MMLV RT, protein-DNA complex, drug-DNA complex; HET: OWL; 1.75A {Moloney murine leukemia virus} SCOP: e.8.1.2 PDB: 1d1u_A 1n4l_A* 1ztt_A 2fjv_A* 2fjw_A 2fjx_A* 2fvp_A 2fvq_A 2fvr_A 2fvs_A 2r2r_A* 2r2s_A* 2r2t_A* 2r2u_A* 1ztw_A* 1i6j_A 1qaj_A* 1d0e_A* 1nnd_A 1mml_A ...
Probab=34.31 E-value=33 Score=27.26 Aligned_cols=42 Identities=17% Similarity=0.286 Sum_probs=29.9
Q ss_pred CCccCCHHHHHHHHHHHHHHhhhCC----CCCCCCCCc------cceEEEEE
Q 030512 80 GGVSLAKEEHKEVAEVAQELQKYCV----EAPVKCPLI------FGEWDVVY 121 (176)
Q Consensus 80 RG~~aS~e~r~~V~~~i~qLE~~np----p~Pl~spLL------~G~W~LlY 121 (176)
+-...++++++++.+.+.+|.+.+. ..|-.+|.+ .|+||+..
T Consensus 39 ~~~~~~~~~~~~~~~~i~~ll~~G~I~~~~sp~~sp~~~V~Kk~~g~~R~~~ 90 (255)
T 3fsi_A 39 KQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQ 90 (255)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHTTSEEEECCSCBCCBCCC-------CCCCB
T ss_pred CCccCCHHHHHHHHHHHHHHHhCCeEEecCCCeECceeEeecCCCCceeEEe
Confidence 4467899999999999999999875 455666622 38888753
No 13
>3p42_A Predicted protein; beta-grAsp, unknown function; HET: MSE; 1.91A {Escherichia coli O127}
Probab=32.88 E-value=43 Score=27.48 Aligned_cols=67 Identities=9% Similarity=0.193 Sum_probs=45.4
Q ss_pred CcccCChhHHHHHHHHhhccCCCCccCCHHHHHHHHHHHHHHhhhCC------C--------CCCCCCCccceEEEEEec
Q 030512 58 PDLRTGPDDLVASILSKVNQSDGGVSLAKEEHKEVAEVAQELQKYCV------E--------APVKCPLIFGEWDVVYCS 123 (176)
Q Consensus 58 p~~~~~~~~Lk~~LL~aIagtdRG~~aS~e~r~~V~~~i~qLE~~np------p--------~Pl~spLL~G~W~LlYTS 123 (176)
+.++...+..|++||+.++-... .-..++.+.+..++++|++..+ . +|-.+++|.|.+.|..-.
T Consensus 48 ~~~~~~~~~qk~~ll~~L~~l~~--~~~~~~a~~~~~l~~~l~~~~~~gR~~v~ld~d~i~~~~~~n~~L~~gd~L~iP~ 125 (236)
T 3p42_A 48 SAAKAKALKDYQHVMAQLASWEA--EADDDVAATIKSVRQQLLNLNITGRLPVKLDPDFVRVDENSNPPLVGDYTLYTVQ 125 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHTTCCCCCCCCCCCCTTSCEESGGGSCBCCEEEEEECCC
T ss_pred cchHHHHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHcCCCCceEEeecCHHHHhcCCCCCCccCCCCEEEECC
Confidence 43444467778888888753321 2233667789999999987653 1 455577899999888777
Q ss_pred CCC
Q 030512 124 VPT 126 (176)
Q Consensus 124 s~~ 126 (176)
.++
T Consensus 126 r~~ 128 (236)
T 3p42_A 126 RPV 128 (236)
T ss_dssp CCS
T ss_pred CCC
Confidence 664
No 14
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=30.61 E-value=30 Score=25.59 Aligned_cols=26 Identities=12% Similarity=0.218 Sum_probs=20.7
Q ss_pred cCCCCccCCHHHHHHHHHHHHHHhhh
Q 030512 77 QSDGGVSLAKEEHKEVAEVAQELQKY 102 (176)
Q Consensus 77 gtdRG~~aS~e~r~~V~~~i~qLE~~ 102 (176)
|.=.|+.+|++||++|-+|..+....
T Consensus 11 ~~~~~L~LTd~Qk~qir~L~~~~r~~ 36 (108)
T 3o39_A 11 GSFKDLNLTDAQKQQIREIMKGQRDQ 36 (108)
T ss_dssp --CCCSCCCHHHHHHHHHHHHTTTTS
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHHh
Confidence 55679999999999999998876554
No 15
>1imu_A Hypothetical protein HI0257; dsRNA binding protein, proteome, solution structure, ribosome, structure 2 function project, S2F; NMR {Haemophilus influenzae} SCOP: d.204.1.1
Probab=30.35 E-value=51 Score=23.43 Aligned_cols=27 Identities=11% Similarity=0.192 Sum_probs=25.2
Q ss_pred CCCCccCCHHHHHHHHHHHHHHhhhCC
Q 030512 78 SDGGVSLAKEEHKEVAEVAQELQKYCV 104 (176)
Q Consensus 78 tdRG~~aS~e~r~~V~~~i~qLE~~np 104 (176)
+.+++.+|+.-|+.|.+-+.+|+++.+
T Consensus 6 ~g~~i~~t~alr~~v~~kl~kL~r~~~ 32 (107)
T 1imu_A 6 TSKQMDITPAIREHLEERLAKLGKWQT 32 (107)
T ss_dssp CCSSSCCCHHHHHHHHHHHHHHHTSSC
T ss_pred EEecCcCCHHHHHHHHHHHHHHHHhcC
Confidence 578999999999999999999999975
No 16
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=29.61 E-value=94 Score=22.27 Aligned_cols=37 Identities=8% Similarity=0.207 Sum_probs=17.6
Q ss_pred hhHHHHHHHHhhccCCCCccCCHHHHHHHHHHHHHHh
Q 030512 64 PDDLVASILSKVNQSDGGVSLAKEEHKEVAEVAQELQ 100 (176)
Q Consensus 64 ~~~Lk~~LL~aIagtdRG~~aS~e~r~~V~~~i~qLE 100 (176)
++.+.-++=.+|....-|-.+++++|++|.+.+.+|+
T Consensus 23 aEsliy~~e~~L~e~~~~dkl~~eek~~I~~~i~el~ 59 (120)
T 2p32_A 23 LESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEIL 59 (120)
T ss_dssp HHHHHHHHHHHHTCTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhchhhhccCCHHHHHHHHHHHHHHH
Confidence 3444444444443211233556666666666655554
No 17
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=28.73 E-value=38 Score=26.22 Aligned_cols=26 Identities=15% Similarity=0.340 Sum_probs=22.1
Q ss_pred cCCCCccCCHHHHHHHHHHHHHHhhh
Q 030512 77 QSDGGVSLAKEEHKEVAEVAQELQKY 102 (176)
Q Consensus 77 gtdRG~~aS~e~r~~V~~~i~qLE~~ 102 (176)
+-=+|+.+|++||++|.+|..+-..-
T Consensus 39 ~m~~~L~LTdeQkqqir~L~~~~r~~ 64 (145)
T 3itf_A 39 HMFDGISLTEHQRQQMRDLMQQARHE 64 (145)
T ss_dssp STTTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999876554
No 18
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=27.33 E-value=1.1e+02 Score=21.59 Aligned_cols=36 Identities=3% Similarity=0.015 Sum_probs=27.1
Q ss_pred ChhHHHHHHHHhhccCCCCccCCHHHHHHHHHHHHHHhhhCC
Q 030512 63 GPDDLVASILSKVNQSDGGVSLAKEEHKEVAEVAQELQKYCV 104 (176)
Q Consensus 63 ~~~~Lk~~LL~aIagtdRG~~aS~e~r~~V~~~i~qLE~~np 104 (176)
++.+||++|- .||+..+-...+-|+++.+-++.-++
T Consensus 30 kVaeLK~eLk------~RGL~~sG~KaeLIeRL~~~~~~~~~ 65 (75)
T 2kvu_A 30 KVAELKQELK------LRSLPVSGTKTELIERLRAYQDQISP 65 (75)
T ss_dssp CHHHHHHHHH------HTTCCCCSCHHHHHHHHHHHHHTTSC
T ss_pred cHHHHHHHHH------HcCCCCCCCHHHHHHHHHHHHHccCC
Confidence 3888998776 48999887777777777777766543
No 19
>2cu9_A Spcia1, histone chaperone CIA1; immunoglobulin fold, structural genomics, NPPSFA; 1.80A {Schizosaccharomyces pombe} SCOP: b.1.22.1 PDB: 2dze_A* 2z34_A 2z3f_A
Probab=25.83 E-value=40 Score=27.06 Aligned_cols=19 Identities=42% Similarity=0.847 Sum_probs=15.3
Q ss_pred CCCCCCCccceEEEEEecCCCC
Q 030512 106 APVKCPLIFGEWDVVYCSVPTS 127 (176)
Q Consensus 106 ~Pl~spLL~G~W~LlYTSs~~~ 127 (176)
+||+.+| +|+++|..|.++
T Consensus 32 e~L~~dl---ewkliYVgSa~s 50 (161)
T 2cu9_A 32 EPLKSDL---EWKLTYVGSATS 50 (161)
T ss_dssp SCCSSCE---EEEEEEESSTTS
T ss_pred ccCCCCe---EEEEEEEcCCCC
Confidence 4666666 899999999876
No 20
>3v26_X ORF3, ORF95, probable sigma(54) modulation protein; ribosome hibernation factor, YHBH, protein E, stress respons stationary phase; 3.10A {Escherichia coli} PDB: 3v28_X 2rql_A
Probab=25.36 E-value=62 Score=22.95 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=24.7
Q ss_pred CCCCccCCHHHHHHHHHHHHHHhhhCC
Q 030512 78 SDGGVSLAKEEHKEVAEVAQELQKYCV 104 (176)
Q Consensus 78 tdRG~~aS~e~r~~V~~~i~qLE~~np 104 (176)
+.|++.+|++-|+.|.+-+++|+++..
T Consensus 6 ~g~~ie~t~alr~~ve~Kl~kL~k~~d 32 (101)
T 3v26_X 6 TGNNVEITEALREFVTAKFAKLEQYFD 32 (101)
T ss_dssp ECSSSCCCHHHHHHHHHHHHHHHTTCS
T ss_pred EEecccCCHHHHHHHHHHHHHHHhhcC
Confidence 468999999999999999999999974
No 21
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=24.46 E-value=1.2e+02 Score=20.54 Aligned_cols=31 Identities=13% Similarity=0.171 Sum_probs=24.3
Q ss_pred HHHHHHhhccCCCCccCCHHHHHHHHHHHHHHhhhCC
Q 030512 68 VASILSKVNQSDGGVSLAKEEHKEVAEVAQELQKYCV 104 (176)
Q Consensus 68 k~~LL~aIagtdRG~~aS~e~r~~V~~~i~qLE~~np 104 (176)
..++++.+.. .++++++.|.+++..++...|
T Consensus 83 ~~~~~~~l~~------~~~~~~~~i~~~i~~i~~~~p 113 (114)
T 3op9_A 83 LKQWLLSLNL------RSEEEIAKIKILVDTVETLYP 113 (114)
T ss_dssp HHHHHHHGGG------SCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHc------CCHHHHHHHHHHHHHHHHHcC
Confidence 3455566654 789999999999999998764
No 22
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=23.99 E-value=1.1e+02 Score=20.19 Aligned_cols=17 Identities=18% Similarity=0.376 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHHHHHHh
Q 030512 84 LAKEEHKEVAEVAQELQ 100 (176)
Q Consensus 84 aS~e~r~~V~~~i~qLE 100 (176)
.+++.+++|.+++++|.
T Consensus 36 vs~~t~~rV~~~a~~lg 52 (67)
T 2l8n_A 36 VSQATRNRVEKAAREVG 52 (67)
T ss_dssp SCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 79999999999999983
No 23
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=23.84 E-value=41 Score=29.08 Aligned_cols=42 Identities=17% Similarity=0.243 Sum_probs=32.7
Q ss_pred CCccCCHHHHHHHHHHHHHHhhhCC----CCCCCCC-Cc-----cceEEEEE
Q 030512 80 GGVSLAKEEHKEVAEVAQELQKYCV----EAPVKCP-LI-----FGEWDVVY 121 (176)
Q Consensus 80 RG~~aS~e~r~~V~~~i~qLE~~np----p~Pl~sp-LL-----~G~W~LlY 121 (176)
+-...++++++++.+.+++|.+.+. ..|-.+| ++ +|+||+..
T Consensus 43 ~~~~~~~~~~~~~~~~i~~ll~~G~I~~~~sp~~spv~~V~Kk~~g~~R~~~ 94 (455)
T 1rw3_A 43 KQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQ 94 (455)
T ss_dssp CCCCCCTTHHHHSHHHHHHHHHTTSEEEECCSCBBCEECCCCSSSSCCCCEE
T ss_pred CCcCCCHHHHHHHHHHHHHHHhCCCEEecCCcccCceEEEeccCCCcEEEch
Confidence 3467899999999999999999875 4566666 22 68998875
No 24
>2doa_A RNA polymerase II elongation factor ELL; C19ORF17, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.81
Probab=23.69 E-value=53 Score=24.58 Aligned_cols=34 Identities=15% Similarity=0.380 Sum_probs=26.6
Q ss_pred HHHHHhhccCCCCccCCHHHHHHHHHHHHHHhhhCCCC
Q 030512 69 ASILSKVNQSDGGVSLAKEEHKEVAEVAQELQKYCVEA 106 (176)
Q Consensus 69 ~~LL~aIagtdRG~~aS~e~r~~V~~~i~qLE~~npp~ 106 (176)
.+|+..+. .+| +++.|++.+..+++|...+||++
T Consensus 29 ~EL~~RL~--kdG--l~~~d~~~l~~iL~eVA~~~~~~ 62 (104)
T 2doa_A 29 AELLLRLQ--KDG--LTQADKDALDGLLQQVANMSAKD 62 (104)
T ss_dssp HHHHHHHH--HHC--CCHHHHHHHHHHHHHSSEECSSS
T ss_pred HHHHHHHH--HcC--CCHHHHHHHHHHHHHHHhcCCcC
Confidence 35555555 456 78999999999999999998854
No 25
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=23.49 E-value=1.7e+02 Score=20.10 Aligned_cols=53 Identities=21% Similarity=0.294 Sum_probs=34.6
Q ss_pred hhHHHHHHHHhhccCCCCccCCHHH--------HHHHHHHHHHHhhhCC--CCCCCCCCccceEEEE
Q 030512 64 PDDLVASILSKVNQSDGGVSLAKEE--------HKEVAEVAQELQKYCV--EAPVKCPLIFGEWDVV 120 (176)
Q Consensus 64 ~~~Lk~~LL~aIagtdRG~~aS~e~--------r~~V~~~i~qLE~~np--p~Pl~spLL~G~W~Ll 120 (176)
.+++..+||+.|....-|-.+|..+ |..|.+.+..||+.+. ..+ ..| |.|.+.
T Consensus 8 ~~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g-~~~---~~W~i~ 70 (81)
T 1qbj_A 8 YQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEA-GTP---PLWKIA 70 (81)
T ss_dssp HHHHHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEES-SSS---CEEEEC
T ss_pred chHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecC-CCC---CeeEEe
Confidence 4556777888887544333444332 5689999999999875 333 233 889875
No 26
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}
Probab=23.18 E-value=43 Score=25.27 Aligned_cols=25 Identities=8% Similarity=0.202 Sum_probs=19.0
Q ss_pred cCCCCccCCHHHHHHHHHHHHHHhh
Q 030512 77 QSDGGVSLAKEEHKEVAEVAQELQK 101 (176)
Q Consensus 77 gtdRG~~aS~e~r~~V~~~i~qLE~ 101 (176)
+.-+|+.+|++|+++|.+|..+-..
T Consensus 27 ~m~~~L~LT~eQ~~qir~i~~~~r~ 51 (138)
T 3oeo_A 27 MMFKDLNLTDAQKQQIREIMKGQRD 51 (138)
T ss_dssp ---CCSCCCTTHHHHHHHHHHHHSS
T ss_pred hHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 3457899999999999999877643
No 27
>2p5i_A BH3822 protein; PFAM03099, structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.21A {Bacillus halodurans c-125} SCOP: d.104.1.3
Probab=23.10 E-value=90 Score=25.69 Aligned_cols=42 Identities=14% Similarity=0.121 Sum_probs=33.1
Q ss_pred ChhHHHHHHHHhhccCCCC---ccCCHHHHHHHHHHHHHHhhhCC
Q 030512 63 GPDDLVASILSKVNQSDGG---VSLAKEEHKEVAEVAQELQKYCV 104 (176)
Q Consensus 63 ~~~~Lk~~LL~aIagtdRG---~~aS~e~r~~V~~~i~qLE~~np 104 (176)
+.+++++.|++++...+.. -.+|+++.+++.++.+++.+.|.
T Consensus 231 ~~~~v~~~l~~~f~~~~~~~~~~~lt~~e~~~~~~~~~~~~~~~~ 275 (288)
T 2p5i_A 231 NVSDVLLKALMTLQQHGASLLTESLSADEWLLYEQHFARISERNE 275 (288)
T ss_dssp CHHHHHHHHHHHHHHTTCCCEECCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCceecCCCHHHHHHHHHHHHHHHHHHh
Confidence 4888999999998876423 24899999999999998866654
No 28
>3u5c_T 40S ribosomal protein S19-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_S 3o30_M 3o2z_M 3u5g_T 3jyv_T*
Probab=22.87 E-value=1.1e+02 Score=24.10 Aligned_cols=36 Identities=14% Similarity=0.421 Sum_probs=27.6
Q ss_pred hhHHHHHHHHhhcc------C-CCCccCCHHHHHHHHHHHHHH
Q 030512 64 PDDLVASILSKVNQ------S-DGGVSLAKEEHKEVAEVAQEL 99 (176)
Q Consensus 64 ~~~Lk~~LL~aIag------t-dRG~~aS~e~r~~V~~~i~qL 99 (176)
...+...+|.+++. . +.|+.+|++.|..+|+++.|+
T Consensus 97 sg~iiR~~LQqLE~~g~vek~~~~GR~lT~~G~~~LD~iA~~v 139 (144)
T 3u5c_T 97 SGSINRKVLQALEKIGIVEISPKGGRRISENGQRDLDRIAAQT 139 (144)
T ss_dssp CHHHHHHHHHHHHHTTSEECCSSSSCEECHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHCCCeeecCCCCcEECHhHHHHHHHHHHHH
Confidence 44555556665554 2 589999999999999999986
No 29
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=22.69 E-value=1.3e+02 Score=26.89 Aligned_cols=42 Identities=21% Similarity=0.393 Sum_probs=31.7
Q ss_pred CCccCCHHHHHHHHHHHHHHhhhCC--C----CCCCCCCc-----cc-eEEEEE
Q 030512 80 GGVSLAKEEHKEVAEVAQELQKYCV--E----APVKCPLI-----FG-EWDVVY 121 (176)
Q Consensus 80 RG~~aS~e~r~~V~~~i~qLE~~np--p----~Pl~spLL-----~G-~W~LlY 121 (176)
+-...+++++++|.+.+.+|.+.+. + .|-.+|.+ +| +||+..
T Consensus 24 ~~~~~~~~~~~~~~~~i~~ll~~G~I~~v~s~s~~~spv~~V~Kk~g~k~R~~v 77 (557)
T 2zd1_A 24 KQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLV 77 (557)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHTTSEEECCSCCCCBBCEEEEECSSCSCEEEEE
T ss_pred CCcCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCcCCeEEEECCCCCceEEEE
Confidence 3467899999999999999998765 2 34445522 68 999985
No 30
>2ywq_A Protein Y, ribosomal subunit interface protein; sigma-54 modulation protein family, structural genomics; 2.64A {Thermus thermophilus} SCOP: d.204.1.1
Probab=22.12 E-value=47 Score=23.29 Aligned_cols=27 Identities=11% Similarity=0.142 Sum_probs=24.7
Q ss_pred CCCCccCCHHHHHHHHHHHHHHhhhCC
Q 030512 78 SDGGVSLAKEEHKEVAEVAQELQKYCV 104 (176)
Q Consensus 78 tdRG~~aS~e~r~~V~~~i~qLE~~np 104 (176)
+.+++.+|+.-|+.|.+-+++|+++.+
T Consensus 7 ~g~~i~~t~al~~~v~~kl~kL~r~~~ 33 (105)
T 2ywq_A 7 IGRNLEITDAIRDYVEKKLARLDRYQD 33 (105)
T ss_dssp EEETSCCCHHHHHHHHHHHHGGGGSCS
T ss_pred EEecCcCCHHHHHHHHHHHHHHHHhcC
Confidence 468899999999999999999999975
No 31
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=21.53 E-value=1.6e+02 Score=22.72 Aligned_cols=56 Identities=16% Similarity=0.157 Sum_probs=32.4
Q ss_pred ccCCCCccCCHHHHHHHHHHHHHHhhhCCC----CCCCCCCccceEEEEEecCCCC--CCCCcc
Q 030512 76 NQSDGGVSLAKEEHKEVAEVAQELQKYCVE----APVKCPLIFGEWDVVYCSVPTS--PGGGYR 133 (176)
Q Consensus 76 agtdRG~~aS~e~r~~V~~~i~qLE~~npp----~Pl~spLL~G~W~LlYTSs~~~--~GG~~R 133 (176)
.|.+++..++.....++.+-.++|++..++ .|.++.+. +|++....-+++ .||.|+
T Consensus 12 ~~~~~~~~M~~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~--~W~~~I~GP~~TpYegG~f~ 73 (169)
T 1yrv_A 12 SGLVPRGSMHGRAYLLLHRDFCDLKENNYKGITAKPVSEDMM--EWEVEIEGLQNSVWQGLVFQ 73 (169)
T ss_dssp ---CCTTGGGCHHHHHHHHHHHHHHHHCCTTEEEEECSTTSC--EEEEEEECCTTSTTTTCEEE
T ss_pred ccccccCccChHHHHHHHHHHHHHHhCCCCCEEEEEcCCccc--cceeEEECCCCCCccceEEE
Confidence 356666676665566677667777665442 46665554 699988754433 454433
No 32
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...
Probab=21.36 E-value=59 Score=25.90 Aligned_cols=30 Identities=13% Similarity=0.185 Sum_probs=26.4
Q ss_pred ccCCHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 030512 82 VSLAKEEHKEVAEVAQELQKYCVEAPVKCP 111 (176)
Q Consensus 82 ~~aS~e~r~~V~~~i~qLE~~npp~Pl~sp 111 (176)
+.++--|+|.|-+.++.++.+.||||-+.-
T Consensus 131 Iil~G~Dke~Vgq~AA~Ir~~r~PepYKGK 160 (180)
T 3v2d_H 131 VRVSGIDKQKVGQVAANIRAIRKPSAYHEK 160 (180)
T ss_dssp EEEEESCHHHHHHHHHHHHHHTCCCSSSSC
T ss_pred EEEEECcHHHHHHHHHHhcccCCCCCcCCC
Confidence 556667899999999999999999999876
No 33
>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G* 2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ...
Probab=21.15 E-value=61 Score=25.71 Aligned_cols=30 Identities=23% Similarity=0.406 Sum_probs=26.3
Q ss_pred ccCCHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 030512 82 VSLAKEEHKEVAEVAQELQKYCVEAPVKCP 111 (176)
Q Consensus 82 ~~aS~e~r~~V~~~i~qLE~~npp~Pl~sp 111 (176)
+.++--|+|.|-+.++.++++.||||-+--
T Consensus 130 Iil~G~Dke~Vgq~AA~Ir~~R~PepYKGK 159 (176)
T 3r8s_G 130 IVLKGADKQVIGQVAADLRAYRRPEPYKGK 159 (176)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCCCSSSCC
T ss_pred EEEEECcHHHHHHHHHHhhccCCCCCccCC
Confidence 456667899999999999999999998865
No 34
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A
Probab=21.05 E-value=1.5e+02 Score=20.78 Aligned_cols=10 Identities=10% Similarity=0.282 Sum_probs=3.9
Q ss_pred HHHHHHhhcc
Q 030512 68 VASILSKVNQ 77 (176)
Q Consensus 68 k~~LL~aIag 77 (176)
.+++.+.|.+
T Consensus 46 i~e~~~wL~~ 55 (113)
T 3lof_A 46 CQEVISWLDA 55 (113)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 3344444433
No 35
>4fyl_A Ribosome hibernation protein YHBH; beta-alpha-beta-BETA-beta-alpha secondary structure fold SIM YFIA of E. coli; HET: FME; 1.60A {Vibrio cholerae}
Probab=20.65 E-value=64 Score=22.48 Aligned_cols=27 Identities=11% Similarity=0.176 Sum_probs=24.3
Q ss_pred CCCCccCCHHHHHHHHHHHHHHhhhCC
Q 030512 78 SDGGVSLAKEEHKEVAEVAQELQKYCV 104 (176)
Q Consensus 78 tdRG~~aS~e~r~~V~~~i~qLE~~np 104 (176)
+.|.+.+|++-|+.|.+-+++|+++..
T Consensus 6 ~g~~i~vt~al~~~v~~Kl~kl~k~~~ 32 (95)
T 4fyl_A 6 QGHHIDLTDSMQDYVHSKFDKLERFFD 32 (95)
T ss_dssp EEESSCCCHHHHHHHHHHHHHHTTTCC
T ss_pred EEECCccCHHHHHHHHHHHHHHHHhcC
Confidence 457899999999999999999999864
Done!