BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030513
         (176 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3U95|A Chain A, Crystal Structure Of A Putative Alpha-Glucosidase From
           Thermotoga Neapolitana
 pdb|3U95|B Chain B, Crystal Structure Of A Putative Alpha-Glucosidase From
           Thermotoga Neapolitana
 pdb|3U95|C Chain C, Crystal Structure Of A Putative Alpha-Glucosidase From
           Thermotoga Neapolitana
 pdb|3U95|D Chain D, Crystal Structure Of A Putative Alpha-Glucosidase From
           Thermotoga Neapolitana
 pdb|3U95|E Chain E, Crystal Structure Of A Putative Alpha-Glucosidase From
           Thermotoga Neapolitana
 pdb|3U95|F Chain F, Crystal Structure Of A Putative Alpha-Glucosidase From
           Thermotoga Neapolitana
          Length = 477

 Score = 26.2 bits (56), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 99  LFLDQVVWLGRSGIYKNKERAELLGRISLF 128
           L ++  VW+  SGI++ K   +L  RI +F
Sbjct: 378 LVMELPVWVDSSGIHREKVEPDLTHRIKIF 407


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.390 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,094,587
Number of Sequences: 62578
Number of extensions: 146345
Number of successful extensions: 278
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 274
Number of HSP's gapped (non-prelim): 4
length of query: 176
length of database: 14,973,337
effective HSP length: 92
effective length of query: 84
effective length of database: 9,216,161
effective search space: 774157524
effective search space used: 774157524
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)