BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030513
(176 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LQ73|PX11C_ARATH Peroxisomal membrane protein 11C OS=Arabidopsis thaliana GN=PEX11C
PE=1 SV=1
Length = 235
Score = 311 bits (798), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 147/169 (86%), Positives = 162/169 (95%)
Query: 1 MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
MSTL+ TRAEL LVV+YLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDK+TSLARKVF
Sbjct: 1 MSTLETTRAELGLVVVYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKNTSLARKVF 60
Query: 61 RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAE 120
RLFKFVNDLHALISPVP+GTPLPLVLLGKSKNALLSTFLFLDQ+VWLGR+GIYK+KERAE
Sbjct: 61 RLFKFVNDLHALISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRTGIYKDKERAE 120
Query: 121 LLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKVYQ 169
+LGRISLFCWMGSSVC++LVE+GELGRLS S+KKLEKE+ + DKH+ Q
Sbjct: 121 ILGRISLFCWMGSSVCTSLVEVGELGRLSASIKKLEKEIGNKDKHQNEQ 169
>sp|O80845|PX11D_ARATH Peroxisomal membrane protein 11D OS=Arabidopsis thaliana GN=PEX11D
PE=1 SV=2
Length = 236
Score = 308 bits (788), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 145/165 (87%), Positives = 160/165 (96%)
Query: 2 STLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVFR 61
+TLD +RAELALVV+YLNKAEARDK+CRAIQYGSKFLS GQPGTAQNVDKSTSLARKVFR
Sbjct: 3 TTLDVSRAELALVVMYLNKAEARDKLCRAIQYGSKFLSGGQPGTAQNVDKSTSLARKVFR 62
Query: 62 LFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAEL 121
LFKFVNDLH LISPVP+GTPLPLVLLGKSKNALLSTFLFLDQ+VWLGRSGIYKNKERAEL
Sbjct: 63 LFKFVNDLHGLISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNKERAEL 122
Query: 122 LGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHK 166
LGRISLFCWMGSSVC+TLVE+GE+GRLS+SMKK+EK LK+ +K++
Sbjct: 123 LGRISLFCWMGSSVCTTLVEVGEMGRLSSSMKKIEKGLKNGNKYQ 167
>sp|Q84JW1|PX11E_ARATH Peroxisomal membrane protein 11E OS=Arabidopsis thaliana GN=PEX11E
PE=1 SV=1
Length = 231
Score = 301 bits (772), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 143/164 (87%), Positives = 155/164 (94%)
Query: 1 MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
M+TLD TRAELAL+VLYLNKAEARDKICRAIQYGSKFLS GQPGTAQ VDK+TSLARKVF
Sbjct: 1 MTTLDLTRAELALIVLYLNKAEARDKICRAIQYGSKFLSGGQPGTAQTVDKNTSLARKVF 60
Query: 61 RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAE 120
RLFKFVND H LISPVP+GTPLPLVLLGKSKNALLSTFLFLDQ+VWLGRSGIYKNKER E
Sbjct: 61 RLFKFVNDFHGLISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNKERTE 120
Query: 121 LLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDK 164
LLGRISLFCW+GSSVC++ VE+GELGRLS+SMKK+EKELK D+
Sbjct: 121 LLGRISLFCWLGSSVCTSAVEIGELGRLSSSMKKMEKELKADDE 164
>sp|Q10SM7|PX111_ORYSJ Peroxisomal membrane protein 11-1 OS=Oryza sativa subsp. japonica
GN=PEX11-1 PE=2 SV=1
Length = 237
Score = 279 bits (714), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 133/166 (80%), Positives = 151/166 (90%)
Query: 1 MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
MSTLDATRAEL LVVLYLNKAEARDKICRAIQYGSKF+S+GQPGTAQ+VD+ST+LARKVF
Sbjct: 1 MSTLDATRAELGLVVLYLNKAEARDKICRAIQYGSKFISNGQPGTAQDVDRSTTLARKVF 60
Query: 61 RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAE 120
RL K+VNDLH LISP +GTPL LVLLGKSKNALLSTFLFLDQ VWLGR+GIYKNKER +
Sbjct: 61 RLLKWVNDLHGLISPPAKGTPLTLVLLGKSKNALLSTFLFLDQFVWLGRTGIYKNKERTD 120
Query: 121 LLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHK 166
+ RISL+CWM SSVC+ LVELGEL RLS SM+KL +EL+D+DK++
Sbjct: 121 RIVRISLYCWMASSVCAGLVELGELKRLSKSMRKLARELRDTDKYE 166
>sp|Q5VRJ8|PX115_ORYSJ Peroxisomal membrane protein 11-5 OS=Oryza sativa subsp. japonica
GN=PEX11-5 PE=2 SV=1
Length = 233
Score = 273 bits (699), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 128/171 (74%), Positives = 154/171 (90%), Gaps = 2/171 (1%)
Query: 1 MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
MS+L++ RA+LAL++LYLNKAEARDKICRAIQYGSKF+S+GQPG AQNVDKSTSLARKVF
Sbjct: 1 MSSLESARADLALLILYLNKAEARDKICRAIQYGSKFVSNGQPGPAQNVDKSTSLARKVF 60
Query: 61 RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAE 120
RLFKFVNDLHALISP +GTPLPL+LLGKSKNALLSTFLFLDQ+VW GR+GIYKNKERAE
Sbjct: 61 RLFKFVNDLHALISPPAKGTPLPLILLGKSKNALLSTFLFLDQIVWAGRTGIYKNKERAE 120
Query: 121 LLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSD--KHKVYQ 169
L +I+ +C++GS+ C++++E+ EL RLS SMKKLEKELK + K++ YQ
Sbjct: 121 FLSKIAFYCFLGSNTCTSIIEVAELQRLSKSMKKLEKELKHQELLKNEQYQ 171
>sp|Q7XU74|PX114_ORYSJ Peroxisomal membrane protein 11-4 OS=Oryza sativa subsp. japonica
GN=PEX11-4 PE=2 SV=2
Length = 222
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 68/160 (42%), Gaps = 16/160 (10%)
Query: 14 VVLYLNKAEARDKICRAIQYGSKFL-------SDGQPGTAQNVDKSTSLARKVFRLFKFV 66
+V++L K + DK+ + QY SK S G G A+N + S L+RK FR +F+
Sbjct: 10 LVVFLAKRDGIDKLVKTFQYVSKLAHWAAESSSPGLAGRAKNWETSAGLSRKAFRTGRFL 69
Query: 67 NDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRIS 126
L+ L + P L NA + F D WL R G+ A L R+S
Sbjct: 70 TGLNGL-----RRAPGEFGALAVLANAGEMVYFFFDHFTWLSRVGVLD----AWLARRMS 120
Query: 127 LFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHK 166
G SV +L + +++ K L++ K K
Sbjct: 121 FISAFGESVGYVFFIAMDLIMIRRGLRQERKLLREGGKDK 160
>sp|Q01IH3|PX114_ORYSI Peroxisomal membrane protein 11-4 OS=Oryza sativa subsp. indica
GN=PEX11-4 PE=2 SV=1
Length = 222
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 68/160 (42%), Gaps = 16/160 (10%)
Query: 14 VVLYLNKAEARDKICRAIQYGSKFL-------SDGQPGTAQNVDKSTSLARKVFRLFKFV 66
+V++L K + DK+ + QY SK S G G A+N + S L+RK FR +F+
Sbjct: 10 LVVFLAKRDGIDKLVKTFQYVSKLAHWAAESSSPGLAGRAKNWETSAGLSRKAFRTGRFL 69
Query: 67 NDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRIS 126
L+ L + P L NA + F D WL R G+ A L R+S
Sbjct: 70 TGLNGL-----RRAPGEFGALAVLANAGEMVYFFFDHFTWLSRVGVLD----AWLARRMS 120
Query: 127 LFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHK 166
G SV +L + +++ K L++ K K
Sbjct: 121 FISAFGESVGYVFFIAMDLIMIRRGLRQERKLLREGGKDK 160
>sp|Q10MN2|PX113_ORYSJ Peroxisomal membrane protein 11-3 OS=Oryza sativa subsp. japonica
GN=PEX11-3 PE=2 SV=1
Length = 242
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 62/116 (53%), Gaps = 14/116 (12%)
Query: 47 QNVDKSTSLARKVFRLFKFVNDLHAL-ISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVV 105
++ + S L+RK FRL KFV +++AL P P P + LL + + FL+Q V
Sbjct: 68 KSFESSVGLSRKAFRLGKFVQNVNALRAHPHP---PPAVALLAYGGEGV---YYFLEQFV 121
Query: 106 WLGRSGIYKNKERAELLGRIS-LFCW--MGSSVCSTLVELGELGRLSTSMKKLEKE 158
WL ++G+ A LL R+ L W + V S ++L E+G+L +S+K KE
Sbjct: 122 WLAKAGLLP----AHLLPRLQRLSAWAELLGYVGSITIKLEEIGKLESSVKMRLKE 173
>sp|A2XFQ8|PX113_ORYSI Peroxisomal membrane protein 11-3 OS=Oryza sativa subsp. indica
GN=PEX11-3 PE=2 SV=1
Length = 242
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 62/116 (53%), Gaps = 14/116 (12%)
Query: 47 QNVDKSTSLARKVFRLFKFVNDLHAL-ISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVV 105
++ + S L+RK FRL KFV +++AL P P P + LL + + FL+Q V
Sbjct: 68 KSFESSVGLSRKAFRLGKFVQNVNALRAHPHP---PPAVALLAYGGEGV---YYFLEQFV 121
Query: 106 WLGRSGIYKNKERAELLGRIS-LFCW--MGSSVCSTLVELGELGRLSTSMKKLEKE 158
WL ++G+ A LL R+ L W + V S ++L E+G+L +S+K KE
Sbjct: 122 WLAKAGLLP----AHLLPRLQRLSAWAELLGYVGSITIKLEEIGKLESSVKMRLKE 173
>sp|Q10MN3|PX112_ORYSJ Peroxisomal membrane protein 11-2 OS=Oryza sativa subsp. japonica
GN=PEX11-2 PE=2 SV=1
Length = 254
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 9/116 (7%)
Query: 47 QNVDKSTSLARKVFRLFKFVNDLHAL----ISPVPQGTPLPLVLLGKSKNALLSTFLFLD 102
++ + S L+RK FRL KFV ++AL P P PL LVLL + + FL+
Sbjct: 74 RSFESSVGLSRKAFRLGKFVQSINALRAAAYHPHPHVHPL-LVLLAYGGQGV---YNFLE 129
Query: 103 QVVWLGRSGIYKNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTSMK-KLEK 157
Q WL ++G+ + L RI ++ + + V S ++L E+ L ++ +LE+
Sbjct: 130 QFAWLAKAGLLPARLLPRRLHRIGVWAQLLAHVGSIAIKLEEVAELECGVEARLEE 185
>sp|Q9FZF1|PX11A_ARATH Peroxisomal membrane protein 11A OS=Arabidopsis thaliana GN=PEX11A
PE=1 SV=1
Length = 248
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 74/142 (52%), Gaps = 13/142 (9%)
Query: 17 YLNKAEARDKICRAIQYGSKFL--SDGQPGTA------QNVDKSTSLARKVFRLFKFVND 68
YL+K + DK+ + +Y +K + S P T ++ + S ++RK FRL KFV D
Sbjct: 24 YLSKRDGVDKLLKISRYATKIILASSLIPETRSIIPRLKSFESSVGVSRKAFRLGKFVQD 83
Query: 69 LHALISP-VPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRISL 127
++AL S L L+++ L + F++Q +WL +SG+ K ++ L +IS
Sbjct: 84 INALRSSRWDSNHELVLLIIAYGGEGL---YYFVEQFIWLTKSGLIDAKH-SKWLQKISA 139
Query: 128 FCWMGSSVCSTLVELGELGRLS 149
+ + V S +++ +L +L+
Sbjct: 140 WAELVGYVGSVSIKIRDLRKLN 161
>sp|Q9STY0|PX11B_ARATH Peroxisomal membrane protein 11B OS=Arabidopsis thaliana GN=PEX11B
PE=1 SV=1
Length = 227
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 70/160 (43%), Gaps = 13/160 (8%)
Query: 14 VVLYLNKAEARDKICRAIQYGSKF----LSDGQPGTAQNVDK---STSLARKVFRLFKFV 66
+V++L K + DK+ + QY +K + +P A K ++ L+RK FR + +
Sbjct: 9 LVVFLAKRDGIDKLVKTFQYVAKLACWHVEATRPEAADRFKKWEVASGLSRKAFRTGRSL 68
Query: 67 NDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRIS 126
+AL P TP+ + L N+ + F D +WL R G A+L ++S
Sbjct: 69 TGFNAL-RRNPGATPM-IRFLAVLANSGEMVYFFFDHFLWLSRIGSID----AKLAKKMS 122
Query: 127 LFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHK 166
G S T + + + +K L+K +D+ K
Sbjct: 123 FISAFGESFGYTFFIIIDCIFIKQRLKSLKKLQHSTDEPK 162
>sp|O75192|PX11A_HUMAN Peroxisomal membrane protein 11A OS=Homo sapiens GN=PEX11A PE=1
SV=1
Length = 247
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 14/116 (12%)
Query: 17 YLNKAEARDKICRAIQYGS---KFLSDGQPGTAQNVDK------STSLARKVFRLFKFVN 67
+ N+ + RD++ RA QY ++L + + G + V K S S RK FRL V+
Sbjct: 7 FTNQTQGRDRLFRATQYTCMLLRYLLEPKAGKEKVVMKLKKLESSVSTGRKWFRLGNVVH 66
Query: 68 DLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGR----SGIYKNKERA 119
+ A + +P + L + N + D ++W+ SGI K K R
Sbjct: 67 AIQATEQSIHATDLVPRLCLTLA-NLNRVIYFICDTILWVRSVGLTSGINKEKWRT 121
>sp|Q54H86|PEX11_DICDI Peroxisomal membrane protein 11 homolog OS=Dictyostelium discoideum
GN=pex11 PE=3 SV=1
Length = 254
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 66/151 (43%), Gaps = 14/151 (9%)
Query: 18 LNKAEARDKICRAIQYGSKFL-------SDGQPGTAQNVDKSTSLARKVFRLFKFVNDLH 70
L + +DKI + +QYG+K L S + ++ ++ ARKV+RL + +
Sbjct: 21 LAQTSGKDKIAKILQYGAKLLGYIFLKRSKHWVDVMKKLETTSGSARKVWRLGNTLAEQQ 80
Query: 71 ALISPVPQGTPLPLV-LLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRISLFC 129
+++ P + +L + + + + D ++ LG + I K LG S
Sbjct: 81 KILALFKVKNPFAFLNILALIRQSGMYFYWVFDHLI-LG-TNIGLCKFDTVKLGWYSSVS 138
Query: 130 WMGSSVCSTLVELGELGRLSTSMKKLEKELK 160
W +CS +++L L M K EK L+
Sbjct: 139 WFFGLLCSIIIDLNTLA----IMLKKEKSLR 165
>sp|O14254|IDHP_SCHPO Probable isocitrate dehydrogenase [NADP], mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=idp1 PE=3 SV=2
Length = 439
Score = 33.1 bits (74), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 61 RLFKFVNDL-HALISPVPQGT-PLPLVLLGKSKNALLSTFLFLDQV 104
RL KF N L HA + V +G L LL KS N + TF FLD V
Sbjct: 382 RLVKFANALEHACVRCVEKGIMTKDLYLLSKSPNGYVDTFEFLDAV 427
>sp|Q0VCP2|PX11A_BOVIN Peroxisomal membrane protein 11A OS=Bos taurus GN=PEX11A PE=2 SV=1
Length = 247
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 14/116 (12%)
Query: 15 VLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQN---------VDKSTSLARKVFRLFKF 65
+ + N+ + RD++ RA QY L A N ++ S S RK FRL
Sbjct: 5 IRFTNQTQGRDRLFRATQYTCMLLRYLLEPKADNEKVVMKLKKLESSVSTGRKWFRLGNV 64
Query: 66 VNDLHALISPVPQGTPLPLVLLG-KSKNALLSTFLFLDQVVWLGRSGIYK--NKER 118
V+ L A V +P + L S N ++ + D V+++ +G+ NKE+
Sbjct: 65 VHALQATQQSVRATDLVPRICLTLASLNRVI--YFICDTVLFVRSTGLASGVNKEK 118
>sp|Q148K5|PX11B_BOVIN Peroxisomal membrane protein 11B OS=Bos taurus GN=PEX11B PE=2 SV=1
Length = 258
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 12/108 (11%)
Query: 15 VLYLNKAEARDKICRAIQYGSKFLSDG--QPGTAQNVDKST-------SLARKVFRLFKF 65
V + +++AR+++CRA QY L + G + + K SL RK+ RL
Sbjct: 5 VRFSAQSQARERLCRAAQYACSLLGHALQKHGASPELQKQIRQLEGHLSLGRKLLRLGNS 64
Query: 66 VNDLHALISPVP-QGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGI 112
+ L + V L + N L + D V+W G+SG+
Sbjct: 65 ADALESAKRAVHLSDVVLRFCITVSHLNRAL--YFACDNVLWAGKSGL 110
>sp|O96011|PX11B_HUMAN Peroxisomal membrane protein 11B OS=Homo sapiens GN=PEX11B PE=1
SV=1
Length = 259
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 12/108 (11%)
Query: 15 VLYLNKAEARDKICRAIQYGSKFLSDG--QPGTAQNVDKST-------SLARKVFRLFKF 65
V + +++AR+++CRA QY L + G + + K SL RK+ RL
Sbjct: 5 VRFSAQSQARERLCRAAQYACSLLGHALQRHGASPELQKQIRQLESHLSLGRKLLRLGNS 64
Query: 66 VNDLHALISPVP-QGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGI 112
+ L + V L + N L + D V+W G+SG+
Sbjct: 65 ADALESAKRAVHLSDVVLRFCITVSHLNRAL--YFACDNVLWAGKSGL 110
>sp|Q9Z210|PX11B_MOUSE Peroxisomal membrane protein 11B OS=Mus musculus GN=Pex11b PE=2
SV=1
Length = 259
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 12/108 (11%)
Query: 15 VLYLNKAEARDKICRAIQYGSKFLSDG--QPGTAQNVDKST-------SLARKVFRLFKF 65
V + +++AR+++CRA QY L + G + + K SL RK+ RL
Sbjct: 5 VRFSAQSQARERLCRAAQYACSLLGHALQRHGASPELQKQIRQLEGHLSLGRKLLRLGNS 64
Query: 66 VNDLHALISPVP-QGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGI 112
+ L + V L + N L + D V+W G+SG+
Sbjct: 65 TDALESAKRAVHLSDVVLRFCITVSHLNRAL--YFACDNVLWAGKSGL 110
>sp|Q5RFI0|PX11B_PONAB Peroxisomal membrane protein 11B OS=Pongo abelii GN=PEX11B PE=2
SV=1
Length = 259
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 12/108 (11%)
Query: 15 VLYLNKAEARDKICRAIQYGSKFLSD--GQPGTAQNVDKST-------SLARKVFRLFKF 65
V + +++AR+++CRA QY L + G + + K SL RK+ RL
Sbjct: 5 VRFSAQSQARERLCRAAQYACSLLGHVLQRHGASPELQKQIRQLESHLSLGRKLLRLGNS 64
Query: 66 VNDLHALISPVP-QGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGI 112
+ L + V L + N L + D V+W G+SG+
Sbjct: 65 ADALESAKRAVHLSDVVLRFCITVSHLNRAL--YFACDNVLWAGKSGL 110
>sp|P53254|UTP22_YEAST U3 small nucleolar RNA-associated protein 22 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=UTP22 PE=1
SV=1
Length = 1237
Score = 30.4 bits (67), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 18/110 (16%)
Query: 15 VLYLNK-AEARDKI-----CRAIQYGSKFLSD-GQPGTAQNVDKSTSLARKVFRLFKFVN 67
+LYL A AR+++ +++ +K+L+ T +N+ S V RLFK
Sbjct: 861 ILYLRAIANARNELKPELEATFLKFTAKYLASVRHTRTLENISHSYQFYSPVVRLFKRWL 920
Query: 68 DLHALISPV-----------PQGTPLPLVLLGKSKNALLSTFLFLDQVVW 106
D H L+ + P P P + G +N L F+ Q W
Sbjct: 921 DTHLLLGHITDELAELIAIKPFVDPAPYFIPGSLENGFLKVLKFISQWNW 970
>sp|Q12462|PEX11_YEAST Peroxisomal membrane protein PMP27 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PEX11 PE=1 SV=2
Length = 236
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Query: 15 VLYLNKAEARDKICRAIQYGSKFLS-DGQPGTAQNVDKSTSLARKVFRLFKFVNDLHALI 73
V +L+ + R+K+ R +QY ++FL+ A+ + + RK R K +N L A
Sbjct: 16 VKFLDGSAGREKVLRLLQYLARFLAVQNSSLLARQLQAQFTTVRKFLRFLKPLNHLQAAA 75
Query: 74 SPVPQ--GTPLPLVLLGKSKNALLSTFLFLDQV 104
+ + + KN + +L LDQV
Sbjct: 76 KFYDNKLASDNVVRVCNVLKNIFFAAYLSLDQV 108
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,673,860
Number of Sequences: 539616
Number of extensions: 2281126
Number of successful extensions: 6334
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 6314
Number of HSP's gapped (non-prelim): 24
length of query: 176
length of database: 191,569,459
effective HSP length: 110
effective length of query: 66
effective length of database: 132,211,699
effective search space: 8725972134
effective search space used: 8725972134
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)