Query 030513
Match_columns 176
No_of_seqs 103 out of 396
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 14:51:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030513.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030513hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05648 PEX11: Peroxisomal bi 100.0 1.8E-33 4E-38 226.1 14.7 148 11-159 1-158 (223)
2 KOG4186 Peroxisomal biogenesis 100.0 4E-30 8.7E-35 208.7 15.9 136 11-148 1-145 (233)
3 PF06305 DUF1049: Protein of u 72.4 6.8 0.00015 25.3 3.7 37 129-165 27-63 (68)
4 PF14147 Spore_YhaL: Sporulati 72.1 11 0.00024 23.9 4.3 31 129-159 3-33 (52)
5 PF04652 DUF605: Vta1 like; I 43.0 2.2E+02 0.0047 24.5 9.0 116 14-145 3-120 (380)
6 PRK11677 hypothetical protein; 37.9 63 0.0014 24.4 4.2 34 129-162 5-41 (134)
7 PF14711 Nitr_red_bet_C: Respi 32.2 72 0.0016 22.1 3.4 33 31-63 32-64 (83)
8 PRK14749 hypothetical protein; 26.5 1.3E+02 0.0028 16.9 3.2 24 128-151 4-27 (30)
9 cd00280 TRFH Telomeric Repeat 26.2 62 0.0013 26.1 2.5 27 14-40 43-69 (200)
10 PF08173 YbgT_YccB: Membrane b 22.8 1.4E+02 0.0029 16.5 2.7 21 128-148 4-24 (28)
11 PF05680 ATP-synt_E: ATP synth 22.0 1.1E+02 0.0024 21.3 2.8 17 133-149 17-33 (86)
12 COG2211 MelB Na+/melibiose sym 21.8 1.7E+02 0.0037 26.7 4.7 69 107-175 394-466 (467)
13 COG4298 Uncharacterized protei 20.6 3.1E+02 0.0068 19.2 5.1 25 109-138 32-56 (95)
No 1
>PF05648 PEX11: Peroxisomal biogenesis factor 11 (PEX11)
Probab=100.00 E-value=1.8e-33 Score=226.08 Aligned_cols=148 Identities=32% Similarity=0.445 Sum_probs=131.3
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHhhcC------Cc---hhHHhHHhhhhhhHHHHHhhcchhHHHHhhccCCCCCC
Q 030513 11 LALVVLYLNKAEARDKICRAIQYGSKFLSDG------QP---GTAQNVDKSTSLARKVFRLFKFVNDLHALISPVPQGTP 81 (176)
Q Consensus 11 l~~~v~~l~t~~GRDK~lR~lQY~skll~~~------~~---~~~~~l~~~ls~aRk~~Rl~k~l~~~~~~~~~~~~~~~ 81 (176)
|+++++|+++++||||++|++||+++++++. .+ ...+++++++|++||+||+||++++++.+.+...++++
T Consensus 1 l~~~~~~l~~~~GrDK~~r~~qy~~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~aRk~~Rl~k~l~~l~~~~~~~~~~~~ 80 (223)
T PF05648_consen 1 LDHFVRFLSSTDGRDKLLRLLQYSSKFLAWYLARRGPSKELSKRLKALSSQLSDARKLFRLGKFLPMLQAARKYIKKKPS 80 (223)
T ss_pred CHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHccCCChHHHHHHHHHHHHhhhHHHHHHHHccHHHHHHHHHhhccCCc
Confidence 5799999999999999999999999999762 12 23479999999999999999999999999988664445
Q ss_pred chhHH-HHhhhhhHHHHHHHHHHHHHHHHhCCCcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 030513 82 LPLVL-LGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKEL 159 (176)
Q Consensus 82 ~~~l~-l~~~~~~~~~~Y~~~D~i~wl~~~gl~~~~~~~~~~~~~s~~fW~~~l~~sii~~l~~L~~l~~~~~~l~~~~ 159 (176)
++++. +..++++++++|+++||++|++++|+++.+. .++|.++|++||++++++++++++++++.+.+++++.+++.
T Consensus 81 d~~~~~l~~l~~~~~~~y~~~D~~~wl~~~gl~~~~~-~~~~~~~s~~~W~~~l~~~l~~~~~~l~~~~~~~~~~~~~~ 158 (223)
T PF05648_consen 81 DQVLRILEILSNLFMFLYYLLDNLVWLSKLGLLPNKS-KKKWSRWSNRFWFASLVLSLVRDLRELRRLRQKERSLKKQL 158 (223)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 67765 7778899999999999999999999999863 44999999999999999999999999999999988877765
No 2
>KOG4186 consensus Peroxisomal biogenesis protein (peroxin) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4e-30 Score=208.71 Aligned_cols=136 Identities=41% Similarity=0.557 Sum_probs=119.6
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHhhc----CCchhH---HhHHhhhhhhHHHHHhhcchhHHHHhhcc--CCCCCC
Q 030513 11 LALVVLYLNKAEARDKICRAIQYGSKFLSD----GQPGTA---QNVDKSTSLARKVFRLFKFVNDLHALISP--VPQGTP 81 (176)
Q Consensus 11 l~~~v~~l~t~~GRDK~lR~lQY~skll~~----~~~~~~---~~l~~~ls~aRk~~Rl~k~l~~~~~~~~~--~~~~~~ 81 (176)
+|++++|+++++||||++|.+||+|+++++ ++|+.+ +++++++|.+||+||+||++++++.+.++ .+.+++
T Consensus 1 ~d~lv~~ln~~~gRDKl~RalQY~akll~~~l~~~~p~~a~~~~kles~~S~~RK~~Rl~k~l~~~~~~~~~~~~~~~~~ 80 (233)
T KOG4186|consen 1 LDHLVRFLNSAAGRDKLCRALQYVAKLLSWHLEAGSPELAKRLKKLESQLSLARKVLRLGKDLNMFQAALQYGLVPLGTD 80 (233)
T ss_pred CcHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccCCCCCc
Confidence 478999999999999999999999999999 778776 57788999999999999999999999998 343332
Q ss_pred chhHHHHhhhhhHHHHHHHHHHHHHHHHhCCCcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030513 82 LPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRISLFCWMGSSVCSTLVELGELGRL 148 (176)
Q Consensus 82 ~~~l~l~~~~~~~~~~Y~~~D~i~wl~~~gl~~~~~~~~~~~~~s~~fW~~~l~~sii~~l~~L~~l 148 (176)
.++..+++.+|+.+++|+++||+.|++++|+++.+ .++|...+..+|.+++.+++.++++.+..+
T Consensus 81 ~~lr~~~~l~n~~~~~Y~~~D~v~Wl~~~gi~~~~--~~~~~~~~~~~w~~sl~l~~~r~~~~~~~~ 145 (233)
T KOG4186|consen 81 NVLRLLGVLKNLAFALYLFLDHVLWLARTGIIPVK--SERWKISRISLWLLSLGLNLCRDMYEVFEL 145 (233)
T ss_pred chhhHHHHHhHHHHHHHHHHHHHHHHHHhCCcccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334778899999999999999999999999987 489999999999999999999999995444
No 3
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=72.44 E-value=6.8 Score=25.31 Aligned_cols=37 Identities=27% Similarity=0.382 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhccccc
Q 030513 129 CWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKH 165 (176)
Q Consensus 129 fW~~~l~~sii~~l~~L~~l~~~~~~l~~~~~~~~~~ 165 (176)
+=++|.+++.+..+....+.+.+.+++++++++-.+.
T Consensus 27 ~f~~G~llg~l~~~~~~~~~r~~~~~~~k~l~~le~e 63 (68)
T PF06305_consen 27 AFLLGALLGWLLSLPSRLRLRRRIRRLRKELKKLEKE 63 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666666666677777777777777665443
No 4
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=72.08 E-value=11 Score=23.90 Aligned_cols=31 Identities=6% Similarity=0.173 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 030513 129 CWMGSSVCSTLVELGELGRLSTSMKKLEKEL 159 (176)
Q Consensus 129 fW~~~l~~sii~~l~~L~~l~~~~~~l~~~~ 159 (176)
+|.+.++.+|+-+.|...+...++++.+++-
T Consensus 3 wWvY~vi~gI~~S~ym~v~t~~eE~~~dq~~ 33 (52)
T PF14147_consen 3 WWVYFVIAGIIFSGYMAVKTAKEEREIDQEF 33 (52)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 6999999999999998888877777766553
No 5
>PF04652 DUF605: Vta1 like; InterPro: IPR006745 This family contains proteins from the Eukaryota; functionally they are uncharacterised.; PDB: 2RKK_B 2RKL_B 3MHV_A.
Probab=43.01 E-value=2.2e+02 Score=24.55 Aligned_cols=116 Identities=16% Similarity=0.171 Sum_probs=54.3
Q ss_pred HHHHhcccchHHHHHHHHHHHHHHhhcCCchhHHhHH-hhhhhhHHHHHhhcchhHHHHhhccCCCCC-CchhHHHHhhh
Q 030513 14 VVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVD-KSTSLARKVFRLFKFVNDLHALISPVPQGT-PLPLVLLGKSK 91 (176)
Q Consensus 14 ~v~~l~t~~GRDK~lR~lQY~skll~~~~~~~~~~l~-~~ls~aRk~~Rl~k~l~~~~~~~~~~~~~~-~~~~l~l~~~~ 91 (176)
+..|+....--|+.-=++-|+||+++... +-.+. ..-....-+.-|++.++.++.-.. .+.. .+.......+.
T Consensus 3 i~~~l~~a~e~~~~~p~v~Y~c~~ya~~~---~l~~~~~~~e~~~~~~~Ll~~lE~~K~~~~--~~~~~~~~~~~~~~v~ 77 (380)
T PF04652_consen 3 ISPFLKRAQELEKRDPVVAYYCRLYAVEQ---ILKLKLRSKECRQFLTSLLDKLEKMKAELG--DNEAILDDVAAQAYVE 77 (380)
T ss_dssp HHHHHHHHHHHHHCTHHHHHHHHHHHHHH---HTT-TT--HHHHHHHHHHHHHHHHHHHCT-----CHHC-HHHHHHHHH
T ss_pred hHHHHHHHHHHhhcCCEEhHHHHHHHHHH---HcCCCCCChhHHHHHHHHHHHHHHhhhccC--cHHhhcCHHHHHHHHH
Confidence 34444444445555568999999997421 00000 111111122344455555554322 1100 02222222222
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030513 92 NALLSTFLFLDQVVWLGRSGIYKNKERAELLGRISLFCWMGSSVCSTLVELGEL 145 (176)
Q Consensus 92 ~~~~~~Y~~~D~i~wl~~~gl~~~~~~~~~~~~~s~~fW~~~l~~sii~~l~~L 145 (176)
+..+-+|--+|+-. +.|-. .+ ..+..||.++.++.++..+-.+
T Consensus 78 ~fa~~~f~~a~~~~---~~~~~------~~--~~~~~f~~a~~~~~~l~~f~~~ 120 (380)
T PF04652_consen 78 NFALKLFNRADKED---RAGRA------TK--QTAKTFYAASTFFEVLNIFGEL 120 (380)
T ss_dssp HHHHHHHHHHHHHH---HSS--------SH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HcCCc------HH--HHHHHHHHHHHHHHHHHHhCCC
Confidence 44444555555432 22221 11 5678899999999988888665
No 6
>PRK11677 hypothetical protein; Provisional
Probab=37.86 E-value=63 Score=24.44 Aligned_cols=34 Identities=12% Similarity=0.054 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHhhcc
Q 030513 129 CWMGSSVCSTLVELGELGRLS---TSMKKLEKELKDS 162 (176)
Q Consensus 129 fW~~~l~~sii~~l~~L~~l~---~~~~~l~~~~~~~ 162 (176)
.|+++++.+++.+..-.+... .+.+++++|+.+.
T Consensus 5 ~a~i~livG~iiG~~~~R~~~~~~~~q~~le~eLe~~ 41 (134)
T PRK11677 5 YALIGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKN 41 (134)
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHH
Confidence 456677777777777654432 3445566666543
No 7
>PF14711 Nitr_red_bet_C: Respiratory nitrate reductase beta C-terminal; PDB: 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B 1Y4Z_B 1Y5L_B 3IR6_B 3IR5_B ....
Probab=32.18 E-value=72 Score=22.12 Aligned_cols=33 Identities=18% Similarity=0.241 Sum_probs=24.0
Q ss_pred HHHHHHHhhcCCchhHHhHHhhhhhhHHHHHhh
Q 030513 31 IQYGSKFLSDGQPGTAQNVDKSTSLARKVFRLF 63 (176)
Q Consensus 31 lQY~skll~~~~~~~~~~l~~~ls~aRk~~Rl~ 63 (176)
++|.+.++..++.+.+...-..+-.-|.++|--
T Consensus 32 i~YLAnLftAGd~~~V~~~L~rL~AmR~ymR~~ 64 (83)
T PF14711_consen 32 IEYLANLFTAGDEEPVRRALKRLLAMRSYMRAK 64 (83)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCChHHHHHHHHHHHHHHHHHHHH
Confidence 799999999998777765555566667777743
No 8
>PRK14749 hypothetical protein; Provisional
Probab=26.53 E-value=1.3e+02 Score=16.87 Aligned_cols=24 Identities=13% Similarity=0.083 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHH
Q 030513 128 FCWMGSSVCSTLVELGELGRLSTS 151 (176)
Q Consensus 128 ~fW~~~l~~sii~~l~~L~~l~~~ 151 (176)
-.|++|+.++..-++....-+..+
T Consensus 4 faWiLG~~lAc~f~ilna~w~E~~ 27 (30)
T PRK14749 4 LLWFVGILLMCSLSTLVLVWLDPR 27 (30)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888877666666555444433
No 9
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=26.20 E-value=62 Score=26.13 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=23.1
Q ss_pred HHHHhcccchHHHHHHHHHHHHHHhhc
Q 030513 14 VVLYLNKAEARDKICRAIQYGSKFLSD 40 (176)
Q Consensus 14 ~v~~l~t~~GRDK~lR~lQY~skll~~ 40 (176)
+++.+..+.-++|.+|++|+.+|+-.+
T Consensus 43 l~~~~~~~a~~~k~l~i~QfLsRI~eG 69 (200)
T cd00280 43 LVGPLKLTATQLKTLRIMQFLSRIAEG 69 (200)
T ss_pred HhccccccccchhHhHHHHHHHHHHcC
Confidence 456777788899999999999999865
No 10
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=22.83 E-value=1.4e+02 Score=16.51 Aligned_cols=21 Identities=14% Similarity=0.243 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 030513 128 FCWMGSSVCSTLVELGELGRL 148 (176)
Q Consensus 128 ~fW~~~l~~sii~~l~~L~~l 148 (176)
-.|++|+.+++.-++..-..+
T Consensus 4 faWilG~~lA~~~~i~~a~wl 24 (28)
T PF08173_consen 4 FAWILGVLLACAFGILNAMWL 24 (28)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 468888877777666655444
No 11
>PF05680 ATP-synt_E: ATP synthase E chain; InterPro: IPR008386 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit E found in the F0 complex of F-ATPases. Mitochondrial F-ATPases can associate together to form dimeric or oligomeric complexes, such interactions involving the physical association of membrane-embedded F0 complexes. In yeast, the F0 complex E subunit appears to play an important role in supporting F-ATPase dimerisation. This subunit is anchored to the inner mitochondrial membrane via its N-terminal region, which is involved in stabilising subunits G and K of the F0 complex. The C-terminal region of subunit E is hydrophilic, protruding into the intermembrane space where it can also help stabilise the F-ATPase dimer complex []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
Probab=22.02 E-value=1.1e+02 Score=21.28 Aligned_cols=17 Identities=6% Similarity=-0.205 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHhH
Q 030513 133 SSVCSTLVELGELGRLS 149 (176)
Q Consensus 133 ~l~~sii~~l~~L~~l~ 149 (176)
+|++||+.+++....|.
T Consensus 17 aL~~Gv~YG~~~~~~L~ 33 (86)
T PF05680_consen 17 ALGLGVVYGAYHQRYLK 33 (86)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56788888888777775
No 12
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=21.81 E-value=1.7e+02 Score=26.75 Aligned_cols=69 Identities=20% Similarity=0.221 Sum_probs=43.1
Q ss_pred HHHhCCCcCc--h-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHhhcccccccCCCCccCC
Q 030513 107 LGRSGIYKNK--E-RAELLGRISLFCWMGSSVCSTLVELGELGRLS-TSMKKLEKELKDSDKHKVYQPNVSAI 175 (176)
Q Consensus 107 l~~~gl~~~~--~-~~~~~~~~s~~fW~~~l~~sii~~l~~L~~l~-~~~~~l~~~~~~~~~~~~~~~~~~~~ 175 (176)
++..|.++.. . .+.-......-.|+-++..-+..-+...+++. ++.+++.+|+.+.++..+++|+.+++
T Consensus 394 L~~~Gyv~~~~~Q~~~al~gI~~~~~~~Pa~l~l~~~i~~~~y~L~~~~~~~I~~eL~~r~~~~~~~~~~~~~ 466 (467)
T COG2211 394 LGAIGYVPNVSAQSASALFGIRFLFIILPALLLLLAAIIIFFYKLNEKMHKEIIEELEQRKAAGSQQPTAKEV 466 (467)
T ss_pred HHHcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccCCcccccccC
Confidence 4445666532 1 12334445566666665555554455567775 55667899999999988888887765
No 13
>COG4298 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.57 E-value=3.1e+02 Score=19.24 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=15.6
Q ss_pred HhCCCcCchhhHHHHHHHHHHHHHHHHHHH
Q 030513 109 RSGIYKNKERAELLGRISLFCWMGSSVCST 138 (176)
Q Consensus 109 ~~gl~~~~~~~~~~~~~s~~fW~~~l~~si 138 (176)
.+|+.-.| ++.+-.-+|..|+++..
T Consensus 32 ~~gi~~lP-----VD~w~KGy~~MG~lflt 56 (95)
T COG4298 32 GLGIWLLP-----VDLWTKGYWAMGILFLT 56 (95)
T ss_pred HHHhheec-----hHHHHHHHHHHHHHHHh
Confidence 45665443 34455678999987654
Done!