Query 030513
Match_columns 176
No_of_seqs 103 out of 396
Neff 7.0
Searched_HMMs 29240
Date Tue Mar 26 00:16:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030513.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030513hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bpo_A Interleukin 13; IL4, IL 31.0 28 0.00097 24.8 2.3 55 19-73 56-121 (127)
2 2yf2_A C4B binding protein; im 22.7 1E+02 0.0035 18.9 3.4 26 136-161 27-52 (65)
3 4dac_A Computationally designe 17.3 78 0.0027 16.2 1.7 17 145-161 3-19 (28)
4 1bde_A VPR protein; AIDS, HIV, 16.9 39 0.0013 18.8 0.5 18 17-34 2-19 (35)
5 2knc_B Integrin beta-3; transm 16.0 2.4E+02 0.0081 18.2 4.6 13 150-162 42-54 (79)
6 3ra3_B P2F; coiled coil domain 12.8 53 0.0018 16.8 0.3 18 146-163 3-20 (28)
7 1kbh_A ACTR, nuclear receptor 10.8 2.5E+02 0.0086 16.5 2.9 25 8-32 7-33 (47)
8 3g2s_A C-terminal fragment of 10.4 2.4E+02 0.0082 20.3 3.4 31 8-38 90-128 (149)
9 1mhq_A ADP-ribosylation factor 10.3 2.3E+02 0.0077 20.3 3.3 32 8-39 80-119 (148)
10 1s4x_A Integrin beta-3; cell a 10.1 2.8E+02 0.0095 17.4 3.2 22 149-170 29-50 (67)
No 1
>3bpo_A Interleukin 13; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 1ijz_A 1ik0_A 3g6d_A 3l5w_I 3l5x_A* 3l5y_A 1ga3_A
Probab=30.96 E-value=28 Score=24.84 Aligned_cols=55 Identities=20% Similarity=0.134 Sum_probs=30.8
Q ss_pred cccchHHHHHHHHHHHHHH--hhc-----CC----chhHHhHHhhhhhhHHHHHhhcchhHHHHhh
Q 030513 19 NKAEARDKICRAIQYGSKF--LSD-----GQ----PGTAQNVDKSTSLARKVFRLFKFVNDLHALI 73 (176)
Q Consensus 19 ~t~~GRDK~lR~lQY~skl--l~~-----~~----~~~~~~l~~~ls~aRk~~Rl~k~l~~~~~~~ 73 (176)
++.....|..|+++..|-= .+. .. .+.++-+++-+...|++||-|+|-+.|..+.
T Consensus 56 S~C~~IqktqRiL~~lc~~k~~a~qv~~~~~~DTkIEv~qfik~LL~~~r~~fR~g~f~~~~~~~~ 121 (127)
T 3bpo_A 56 SGCSAIEKTQRMLSGFCPHKVSAGQFSSLHVRDTKIEVAQFVKDLLLHLKKLFREGQFNRNFESII 121 (127)
T ss_dssp CSCGGGHHHHHHHTTSSCC--------CCSCCCCEECHHHHHHHHHHHHHHHHHHTCC--------
T ss_pred chhHHHHHHHHHhcccCCCCCccccceeeeccchHHHHHHHHHHHHHHHHHHHccCchhcccceeE
Confidence 3455677778877554311 111 11 2445778999999999999999998887653
No 2
>2yf2_A C4B binding protein; immune system, complement system; 2.24A {Gallus gallus}
Probab=22.67 E-value=1e+02 Score=18.88 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhhc
Q 030513 136 CSTLVELGELGRLSTSMKKLEKELKD 161 (176)
Q Consensus 136 ~sii~~l~~L~~l~~~~~~l~~~~~~ 161 (176)
..-++.+.++++|..++++++.|+..
T Consensus 27 ~~~~rTLLEi~KL~LEIQKL~~EL~g 52 (65)
T 2yf2_A 27 TEDVKTLLEIRKLFLEIQKLKVELQG 52 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34466777778888888888888764
No 3
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=17.33 E-value=78 Score=16.18 Aligned_cols=17 Identities=35% Similarity=0.581 Sum_probs=10.7
Q ss_pred HHHhHHHHHHHHHHhhc
Q 030513 145 LGRLSTSMKKLEKELKD 161 (176)
Q Consensus 145 L~~l~~~~~~l~~~~~~ 161 (176)
.+++....+++++|.++
T Consensus 3 vykldanvkrlekevgk 19 (28)
T 4dac_A 3 VYKLDANVKRLEKEVGK 19 (28)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeeccccHHHHHHHHhh
Confidence 34556667777777654
No 4
>1bde_A VPR protein; AIDS, HIV, viral protein, VPR fragment, helix; NMR {Synthetic} SCOP: j.11.1.1 PDB: 1dsj_A
Probab=16.90 E-value=39 Score=18.81 Aligned_cols=18 Identities=22% Similarity=0.170 Sum_probs=14.5
Q ss_pred HhcccchHHHHHHHHHHH
Q 030513 17 YLNKAEARDKICRAIQYG 34 (176)
Q Consensus 17 ~l~t~~GRDK~lR~lQY~ 34 (176)
+.+|.+|-+.+.|++|-.
T Consensus 2 yGDTw~GveaiiriLQq~ 19 (35)
T 1bde_A 2 YGDTWAGVEAIIRILQQL 19 (35)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHH
Confidence 457788999999999864
No 5
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=16.01 E-value=2.4e+02 Score=18.19 Aligned_cols=13 Identities=23% Similarity=0.342 Sum_probs=6.2
Q ss_pred HHHHHHHHHhhcc
Q 030513 150 TSMKKLEKELKDS 162 (176)
Q Consensus 150 ~~~~~l~~~~~~~ 162 (176)
.+-++-|+|..+.
T Consensus 42 rE~~kFEkE~~~~ 54 (79)
T 2knc_B 42 KEFAKFEEERARA 54 (79)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 3334455555444
No 6
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=12.80 E-value=53 Score=16.84 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=9.6
Q ss_pred HHhHHHHHHHHHHhhccc
Q 030513 146 GRLSTSMKKLEKELKDSD 163 (176)
Q Consensus 146 ~~l~~~~~~l~~~~~~~~ 163 (176)
++++++..++++|++.-+
T Consensus 3 rrlkqknarlkqeiaale 20 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALE 20 (28)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHH
Confidence 345555555666655433
No 7
>1kbh_A ACTR, nuclear receptor coactivator; nuclear hormone receptors, ACTR, CBP, transcription; NMR {Homo sapiens} SCOP: a.153.1.1
Probab=10.78 E-value=2.5e+02 Score=16.46 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcccc--hHHHHHHHHH
Q 030513 8 RAELALVVLYLNKAE--ARDKICRAIQ 32 (176)
Q Consensus 8 ~~~l~~~v~~l~t~~--GRDK~lR~lQ 32 (176)
...+++++.+|++++ |.+-+=|.+-
T Consensus 7 ~aLl~QL~~~L~~~d~~~LeEiDrALG 33 (47)
T 1kbh_A 7 RALLDQLHTLLSNTDATGLEEIDRALG 33 (47)
T ss_dssp HHHHHHHHHHTTSSCCTTHHHHHHHTT
T ss_pred HHHHHHHHHHHhccchhhHHHHHHhcC
Confidence 567899999999888 7777666554
No 8
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=10.43 E-value=2.4e+02 Score=20.28 Aligned_cols=31 Identities=13% Similarity=0.023 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhcc--------cchHHHHHHHHHHHHHHh
Q 030513 8 RAELALVVLYLNK--------AEARDKICRAIQYGSKFL 38 (176)
Q Consensus 8 ~~~l~~~v~~l~t--------~~GRDK~lR~lQY~skll 38 (176)
.++++.++++++. ..=++|++.++|-++.-+
T Consensus 90 ~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 128 (149)
T 3g2s_A 90 FRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL 128 (149)
T ss_dssp HHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence 7889999998853 235899999999998865
No 9
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=10.31 E-value=2.3e+02 Score=20.31 Aligned_cols=32 Identities=6% Similarity=0.088 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcc--------cchHHHHHHHHHHHHHHhh
Q 030513 8 RAELALVVLYLNK--------AEARDKICRAIQYGSKFLS 39 (176)
Q Consensus 8 ~~~l~~~v~~l~t--------~~GRDK~lR~lQY~skll~ 39 (176)
.++++.++++++. ..=++|++.++|-++.-+.
T Consensus 80 ~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (148)
T 1mhq_A 80 FRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFP 119 (148)
T ss_dssp HHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 7899999998874 2359999999999887653
No 10
>1s4x_A Integrin beta-3; cell adhesion; NMR {Homo sapiens} SCOP: j.60.1.1 PDB: 2ljd_A* 2lje_A* 2ljf_A*
Probab=10.10 E-value=2.8e+02 Score=17.45 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhhcccccccCCC
Q 030513 149 STSMKKLEKELKDSDKHKVYQP 170 (176)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~~~~ 170 (176)
+.+-++.++|....-....+.|
T Consensus 29 rrEyakFE~Er~~akw~~~~NP 50 (67)
T 1s4x_A 29 RKEFAKFEEERARAKWDTANNP 50 (67)
T ss_dssp HHHHHHHHHHHTTTTTCSSSST
T ss_pred HHHHHHHHHHHHHccccccCCC
Confidence 3444667777765544444444
Done!