Query 030513
Match_columns 176
No_of_seqs 103 out of 396
Neff 7.0
Searched_HMMs 13730
Date Tue Mar 26 00:16:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030513.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030513hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ohpa1 d.17.4.3 (A:1-125) Del 14.1 49 0.0036 20.0 2.4 22 1-22 1-22 (125)
2 d1kbha_ a.153.1.1 (A:) Nuclear 11.9 1E+02 0.0076 16.6 2.9 24 8-31 7-32 (47)
3 d2oa5a1 d.362.1.1 (A:7-102) Un 11.2 60 0.0044 20.5 2.0 24 144-167 10-33 (96)
4 d1h6pa_ a.146.1.1 (A:) TRF2 {H 10.9 53 0.0039 23.6 1.8 33 8-40 38-71 (203)
5 d3bqoa1 a.146.1.1 (A:62-265) T 8.3 90 0.0065 22.3 2.2 28 13-40 47-74 (204)
6 d1xl3c1 a.243.1.1 (C:2-92) Tye 7.7 61 0.0044 20.3 0.9 19 17-35 58-76 (91)
7 d1vp7a_ a.7.13.1 (A:) Exonucle 7.5 2.2E+02 0.016 16.3 5.0 39 2-40 6-45 (68)
8 d1mkma1 a.4.5.33 (A:1-75) Tran 7.2 1.3E+02 0.0098 17.1 2.4 45 24-71 4-49 (75)
9 d1dvpa1 a.118.9.2 (A:1-145) Hr 6.3 2.3E+02 0.017 18.2 3.6 33 8-40 84-119 (145)
10 d1ik0a_ a.26.1.2 (A:) Interleu 6.1 1.5E+02 0.011 18.9 2.2 47 19-65 55-112 (113)
No 1
>d1ohpa1 d.17.4.3 (A:1-125) Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI {Comamonas testosteroni, also known as Pseudomonas testosteroni [TaxId: 285]}
Probab=14.12 E-value=49 Score=20.00 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=18.6
Q ss_pred CCchHHhHHHHHHHHHHhcccc
Q 030513 1 MSTLDATRAELALVVLYLNKAE 22 (176)
Q Consensus 1 ~~~~~~~~~~l~~~v~~l~t~~ 22 (176)
|.|++...+.++++...+++.+
T Consensus 1 M~s~e~~~~~v~~~~~a~~~~D 22 (125)
T d1ohpa1 1 MNTPEHMTAVVQRYVAALNAGD 22 (125)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTC
T ss_pred CcChHHHHHHHHHHHHHHHcCC
Confidence 8899999888888888887765
No 2
>d1kbha_ a.153.1.1 (A:) Nuclear receptor coactivator ACTR {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.90 E-value=1e+02 Score=16.59 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhcccc--hHHHHHHHH
Q 030513 8 RAELALVVLYLNKAE--ARDKICRAI 31 (176)
Q Consensus 8 ~~~l~~~v~~l~t~~--GRDK~lR~l 31 (176)
.+.|+++..+|+.++ |.+-+=|.+
T Consensus 7 ~aLldQL~s~L~~~D~~~LeEiDrAL 32 (47)
T d1kbha_ 7 RALLDQLHTLLSNTDATGLEEIDRAL 32 (47)
T ss_dssp HHHHHHHHHHTTSSCCTTHHHHHHHT
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHh
Confidence 467899999999777 766665543
No 3
>d2oa5a1 d.362.1.1 (A:7-102) Uncharacterized protein BQLF2 {Murid herpesvirus 4 [TaxId: 33708]}
Probab=11.24 E-value=60 Score=20.54 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=13.8
Q ss_pred HHHHhHHHHHHHHHHhhccccccc
Q 030513 144 ELGRLSTSMKKLEKELKDSDKHKV 167 (176)
Q Consensus 144 ~L~~l~~~~~~l~~~~~~~~~~~~ 167 (176)
+|.+|+-+.+.|++.++.++..-+
T Consensus 10 eL~rL~~ENk~LKkkl~~~~~~~~ 33 (96)
T d2oa5a1 10 EVERLKLENKTLKQKVKSSGAVSS 33 (96)
T ss_dssp HHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCC
Confidence 567888889999999998754433
No 4
>d1h6pa_ a.146.1.1 (A:) TRF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.87 E-value=53 Score=23.62 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=23.1
Q ss_pred HHHHHH-HHHHhcccchHHHHHHHHHHHHHHhhc
Q 030513 8 RAELAL-VVLYLNKAEARDKICRAIQYGSKFLSD 40 (176)
Q Consensus 8 ~~~l~~-~v~~l~t~~GRDK~lR~lQY~skll~~ 40 (176)
++.++- +++.++....-+|.+|++|+.+|+-.+
T Consensus 38 rdi~eall~~~~~~~~~~~kti~i~QfL~RI~eG 71 (203)
T d1h6pa_ 38 RDIMQALLVRPLGKEHTVSRLLRVMQCLSRIEEG 71 (203)
T ss_dssp HHHHHHHTTSCCC----CHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCccccccchhhHHHHHHHHHHHHcC
Confidence 455555 457888888999999999999999865
No 5
>d3bqoa1 a.146.1.1 (A:62-265) TRF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.29 E-value=90 Score=22.35 Aligned_cols=28 Identities=4% Similarity=0.011 Sum_probs=22.8
Q ss_pred HHHHHhcccchHHHHHHHHHHHHHHhhc
Q 030513 13 LVVLYLNKAEARDKICRAIQYGSKFLSD 40 (176)
Q Consensus 13 ~~v~~l~t~~GRDK~lR~lQY~skll~~ 40 (176)
-+++.++...-+.|.+|++|+.+|+-.+
T Consensus 47 ll~~~~~~~~~~~k~i~i~QfLsRI~eG 74 (204)
T d3bqoa1 47 IIHGLSSLTACQLRTIYICQFLTRIAAG 74 (204)
T ss_dssp HHHTCSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHhCccccCccchhHHHHHHHHHHHHcC
Confidence 3456677777888999999999999865
No 6
>d1xl3c1 a.243.1.1 (C:2-92) TyeA {Yersinia pestis [TaxId: 632]}
Probab=7.70 E-value=61 Score=20.31 Aligned_cols=19 Identities=16% Similarity=0.232 Sum_probs=15.2
Q ss_pred HhcccchHHHHHHHHHHHH
Q 030513 17 YLNKAEARDKICRAIQYGS 35 (176)
Q Consensus 17 ~l~t~~GRDK~lR~lQY~s 35 (176)
..+.-++|+|++..+|=+-
T Consensus 58 ~f~d~e~R~~lL~a~Q~AL 76 (91)
T d1xl3c1 58 VFSDEEQRQNLLQMCQNAI 76 (91)
T ss_dssp GSSCHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHH
Confidence 4577889999999998653
No 7
>d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB {Bordetella pertussis [TaxId: 520]}
Probab=7.54 E-value=2.2e+02 Score=16.27 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=33.4
Q ss_pred CchHHhHHHHHHHHHHhcccc-hHHHHHHHHHHHHHHhhc
Q 030513 2 STLDATRAELALVVLYLNKAE-ARDKICRAIQYGSKFLSD 40 (176)
Q Consensus 2 ~~~~~~~~~l~~~v~~l~t~~-GRDK~lR~lQY~skll~~ 40 (176)
.|.+.+++.|+.+|+-|.+-+ ..|..++..+=+.+++..
T Consensus 6 ~sfEe~l~~LE~IV~~LE~g~l~Leesl~~ye~G~~L~~~ 45 (68)
T d1vp7a_ 6 QDFETALAELESLVSAMENGTLPLEQSLSAYRRGVELARV 45 (68)
T ss_dssp CSHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 467788999999999998777 999999999999888753
No 8
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=7.15 E-value=1.3e+02 Score=17.09 Aligned_cols=45 Identities=4% Similarity=0.091 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHhhcCCchhHHhHHhhhhhhH-HHHHhhcchhHHHH
Q 030513 24 RDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLAR-KVFRLFKFVNDLHA 71 (176)
Q Consensus 24 RDK~lR~lQY~skll~~~~~~~~~~l~~~ls~aR-k~~Rl~k~l~~~~~ 71 (176)
-||.++++.+.+.- ..|-....+.+.++..+ .+.|+.+.+.....
T Consensus 4 l~r~l~IL~~~a~~---~~~~s~~eia~~~~~~~st~~rll~tL~~~g~ 49 (75)
T d1mkma1 4 LKKAFEILDFIVKN---PGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGF 49 (75)
T ss_dssp HHHHHHHHHHHHHC---SSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhC---CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 46777777775532 22323345555555544 24455544444333
No 9
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=6.26 E-value=2.3e+02 Score=18.18 Aligned_cols=33 Identities=12% Similarity=0.219 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhccc---chHHHHHHHHHHHHHHhhc
Q 030513 8 RAELALVVLYLNKA---EARDKICRAIQYGSKFLSD 40 (176)
Q Consensus 8 ~~~l~~~v~~l~t~---~GRDK~lR~lQY~skll~~ 40 (176)
.++++.++++.++. .-++|++.++|-++.-+..
T Consensus 84 ~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 119 (145)
T d1dvpa1 84 KENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRS 119 (145)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 56777777777554 3689999999998886643
No 10
>d1ik0a_ a.26.1.2 (A:) Interleukin-13 (IL-13) {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.14 E-value=1.5e+02 Score=18.88 Aligned_cols=47 Identities=26% Similarity=0.175 Sum_probs=29.4
Q ss_pred cccchHHHHHHHHHHHHHHh-hcC--C----c----hhHHhHHhhhhhhHHHHHhhcc
Q 030513 19 NKAEARDKICRAIQYGSKFL-SDG--Q----P----GTAQNVDKSTSLARKVFRLFKF 65 (176)
Q Consensus 19 ~t~~GRDK~lR~lQY~skll-~~~--~----~----~~~~~l~~~ls~aRk~~Rl~k~ 65 (176)
++..-..|+.|++-..|.=- +.+ + + +.++=++.-+...|++||-++|
T Consensus 55 S~Cs~Iq~tqRmL~~lc~~k~sag~vss~~~rDTKIEv~qfik~LL~~~r~ifr~~~f 112 (113)
T d1ik0a_ 55 SGCSAIEKTQRMLSGFCPHKVSAGQFSSLHVRDTKIEVAQFVKDLLLHLKKLFREGRF 112 (113)
T ss_dssp CSCGGGHHHHHHHHHHCCCCCCTTCCSSTTSCCCEEEHHHHHHHHHHHHHHHHHHTCC
T ss_pred cccHHHHHHHHHHHhhccCCCCcccccccccCccchHHHHHHHHHHHHHHHHHccCCC
Confidence 44556677777765544211 111 1 1 3346778889999999999986
Done!