BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030515
(176 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UIE|A Chain A, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Amppnp And Aps
pdb|3UIE|B Chain B, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Amppnp And Aps
pdb|3UIE|C Chain C, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Amppnp And Aps
pdb|4FXP|A Chain A, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Sulfate And
Aps
pdb|4FXP|B Chain B, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Sulfate And
Aps
pdb|4FXP|C Chain C, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Sulfate And
Aps
Length = 200
Score = 150 bits (380), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 70/88 (79%), Positives = 78/88 (88%)
Query: 79 STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138
STNI WH+ SV+K DRQ+LL QKGCVIW+TGLSGSGKSTLACAL+Q L+ +GKL YILDG
Sbjct: 2 STNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDG 61
Query: 139 DNCRHGLNRDLSFKAEDRVENIRRIGSV 166
DN RHGLNRDLSFKAEDR ENIRR+G V
Sbjct: 62 DNVRHGLNRDLSFKAEDRAENIRRVGEV 89
>pdb|1X6V|B Chain B, The Crystal Structure Of Human 3'-Phosphoadenosine-5'-
Phosphosulfate Synthetase 1
pdb|1X6V|A Chain A, The Crystal Structure Of Human 3'-Phosphoadenosine-5'-
Phosphosulfate Synthetase 1
pdb|1XJQ|B Chain B, Adp Complex Of Human Paps Synthetase 1
pdb|1XJQ|A Chain A, Adp Complex Of Human Paps Synthetase 1
pdb|1XNJ|B Chain B, Aps Complex Of Human Paps Synthetase 1
pdb|1XNJ|A Chain A, Aps Complex Of Human Paps Synthetase 1
Length = 630
Score = 93.2 bits (230), Expect = 7e-20, Method: Composition-based stats.
Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 4/103 (3%)
Query: 68 NNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKG----CVIWITGLSGSGKSTLACALS 123
+N QN + ++TN+ + + V + R Q++ +G C +W+TGLSG+GK+T++ AL
Sbjct: 14 SNNAQNWGMQRATNVTYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALE 73
Query: 124 QALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGSV 166
+ L G Y LDGDN R GLN++L F EDR EN+RRI V
Sbjct: 74 EYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEV 116
>pdb|1D6J|A Chain A, Crystal Structure Of Adenosine 5'-Phosphosulfate (Aps)
Kinase From Penicillium Chrysogenum
pdb|1D6J|B Chain B, Crystal Structure Of Adenosine 5'-Phosphosulfate (Aps)
Kinase From Penicillium Chrysogenum
pdb|1M7G|A Chain A, Crystal Structure Of Aps Kinase From Penicillium
Chrysogenum: Ternary Structure With Adp And Aps
pdb|1M7G|B Chain B, Crystal Structure Of Aps Kinase From Penicillium
Chrysogenum: Ternary Structure With Adp And Aps
pdb|1M7G|C Chain C, Crystal Structure Of Aps Kinase From Penicillium
Chrysogenum: Ternary Structure With Adp And Aps
pdb|1M7G|D Chain D, Crystal Structure Of Aps Kinase From Penicillium
Chrysogenum: Ternary Structure With Adp And Aps
pdb|1M7H|A Chain A, Crystal Structure Of Aps Kinase From Penicillium
Chrysogenum: Structure With Aps Soaked Out Of One Dimer
pdb|1M7H|B Chain B, Crystal Structure Of Aps Kinase From Penicillium
Chrysogenum: Structure With Aps Soaked Out Of One Dimer
pdb|1M7H|C Chain C, Crystal Structure Of Aps Kinase From Penicillium
Chrysogenum: Structure With Aps Soaked Out Of One Dimer
pdb|1M7H|D Chain D, Crystal Structure Of Aps Kinase From Penicillium
Chrysogenum: Structure With Aps Soaked Out Of One Dimer
Length = 211
Score = 92.8 bits (229), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 47/89 (52%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
Query: 79 STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALS-QALHWRGKLTYILD 137
STNI +H +++ + +R +L Q+G IW+TGLS SGKSTLA L Q + R Y LD
Sbjct: 2 STNITFHASALTRSERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61
Query: 138 GDNCRHGLNRDLSFKAEDRVENIRRIGSV 166
GDN R GLN+DL F DR ENIRRI V
Sbjct: 62 GDNIRFGLNKDLGFSEADRNENIRRIAEV 90
>pdb|2OFW|A Chain A, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|B Chain B, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|C Chain C, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|D Chain D, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|E Chain E, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|F Chain F, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|G Chain G, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|H Chain H, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
Length = 208
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 60/93 (64%), Gaps = 4/93 (4%)
Query: 78 KSTNILWHKNSVDKRDRQQLLQQKG----CVIWITGLSGSGKSTLACALSQALHWRGKLT 133
++TN+ + + V + R Q++ +G C IW+TGLSG+GK+T++ AL + L G
Sbjct: 5 RATNVTYQAHHVSRNKRGQVVGTRGGFRGCTIWLTGLSGAGKTTVSMALEEYLVCHGIPC 64
Query: 134 YILDGDNCRHGLNRDLSFKAEDRVENIRRIGSV 166
Y LDGDN R GLN++L F EDR EN+RRI V
Sbjct: 65 YTLDGDNIRQGLNKNLGFSPEDREENVRRIAEV 97
>pdb|2OFX|A Chain A, Crystal Structure Of The Apsk Domain Of Human Papss1 In
Complex With Adpmg And Paps
pdb|2OFX|B Chain B, Crystal Structure Of The Apsk Domain Of Human Papss1 In
Complex With Adpmg And Paps
Length = 207
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 59/92 (64%), Gaps = 4/92 (4%)
Query: 79 STNILWHKNSVDKRDRQQLLQQKG----CVIWITGLSGSGKSTLACALSQALHWRGKLTY 134
+TN+ + + V + R Q++ +G C +W+TGLSG+GK+T++ AL + L G Y
Sbjct: 5 ATNVTYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCY 64
Query: 135 ILDGDNCRHGLNRDLSFKAEDRVENIRRIGSV 166
LDGDN R GLN++L F EDR EN+RRI V
Sbjct: 65 TLDGDNIRQGLNKNLGFSPEDREENVRRIAEV 96
>pdb|2PEY|A Chain A, Crystal Strucutre Of Deletion Mutant Of Aps-Kinase Domain
Of Human Paps-Synthetase 1
pdb|2PEY|B Chain B, Crystal Strucutre Of Deletion Mutant Of Aps-Kinase Domain
Of Human Paps-Synthetase 1
pdb|2PEZ|A Chain A, Crystal Structrue Of Deletion Mutant Of Aps-Kinase Domain
Of Human Paps-Synthetase 1 In Complex With Cyclic Paps
And Dadp
pdb|2PEZ|B Chain B, Crystal Structrue Of Deletion Mutant Of Aps-Kinase Domain
Of Human Paps-Synthetase 1 In Complex With Cyclic Paps
And Dadp
Length = 179
Score = 82.8 bits (203), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 47/66 (71%)
Query: 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENI 160
+GC +W+TGLSG+GK+T++ AL + L G Y LDGDN R GLN++L F EDR EN+
Sbjct: 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENV 63
Query: 161 RRIGSV 166
RRI V
Sbjct: 64 RRIAEV 69
>pdb|2AX4|A Chain A, Crystal Structure Of The Kinase Domain Of Human 3'-
Phosphoadenosine 5'-Phosphosulphate Synthetase 2
pdb|2AX4|B Chain B, Crystal Structure Of The Kinase Domain Of Human 3'-
Phosphoadenosine 5'-Phosphosulphate Synthetase 2
pdb|2AX4|C Chain C, Crystal Structure Of The Kinase Domain Of Human 3'-
Phosphoadenosine 5'-Phosphosulphate Synthetase 2
pdb|2AX4|D Chain D, Crystal Structure Of The Kinase Domain Of Human 3'-
Phosphoadenosine 5'-Phosphosulphate Synthetase 2
Length = 198
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 46/66 (69%)
Query: 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENI 160
+GC +W+TGLSG+GK+T++ AL + L Y LDGDN RHGLNR+L F DR ENI
Sbjct: 21 RGCTVWLTGLSGAGKTTISFALEEYLVSHAIPCYSLDGDNVRHGLNRNLGFSPGDREENI 80
Query: 161 RRIGSV 166
RRI V
Sbjct: 81 RRIAEV 86
>pdb|3CR7|A Chain A, Crystal Structure Of N-Terminal Truncation Of Aps Kinase
From Penicillium Chrysogenum: Ternary Structure With Adp
And Paps
pdb|3CR7|B Chain B, Crystal Structure Of N-Terminal Truncation Of Aps Kinase
From Penicillium Chrysogenum: Ternary Structure With Adp
And Paps
pdb|3CR7|C Chain C, Crystal Structure Of N-Terminal Truncation Of Aps Kinase
From Penicillium Chrysogenum: Ternary Structure With Adp
And Paps
pdb|3CR7|D Chain D, Crystal Structure Of N-Terminal Truncation Of Aps Kinase
From Penicillium Chrysogenum: Ternary Structure With Adp
And Paps
Length = 197
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 100 QKGCVIWITGLSGSGKSTLACALS-QALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE 158
Q+G IW+TGLS SGKSTLA L Q + R Y LDGDN R GLN+DL F DR E
Sbjct: 1 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNE 60
Query: 159 NIRRIGSV 166
NIRRI V
Sbjct: 61 NIRRIAEV 68
>pdb|2GKS|A Chain A, Crystal Structure Of The Bi-Functional Atp Sulfurylase-Aps
Kinase From Aquifex Aeolicus, A Chemolithotrophic
Thermophile
pdb|2GKS|B Chain B, Crystal Structure Of The Bi-Functional Atp Sulfurylase-Aps
Kinase From Aquifex Aeolicus, A Chemolithotrophic
Thermophile
Length = 546
Score = 64.7 bits (156), Expect = 3e-11, Method: Composition-based stats.
Identities = 31/68 (45%), Positives = 43/68 (63%)
Query: 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE 158
++G +W+TGL +GKST+A L+ L RG+ +LDGD R L+R L F EDR+
Sbjct: 369 HKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGLGFSKEDRIT 428
Query: 159 NIRRIGSV 166
NI R+G V
Sbjct: 429 NILRVGFV 436
>pdb|2YVU|A Chain A, Crystal Structure Of Ape1195
pdb|2YVU|B Chain B, Crystal Structure Of Ape1195
Length = 186
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 40/64 (62%)
Query: 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN 159
+KG V+W+TGL GSGK+T+A L+ L G +LDGD R ++ F E+R+ +
Sbjct: 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGAGFTREERLRH 70
Query: 160 IRRI 163
++RI
Sbjct: 71 LKRI 74
>pdb|3CR8|A Chain A, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|B Chain B, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|C Chain C, Hexameric Aps Kinase From Thiobacillus Denitrificans
Length = 552
Score = 55.8 bits (133), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 99 QQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRV 157
+++G ++ TGLSG+GKSTLA AL+ L G+ +LDGD R L+ +L F R
Sbjct: 366 ERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRD 425
Query: 158 ENIRRIGSV 166
N+RRIG V
Sbjct: 426 VNVRRIGFV 434
>pdb|1I2D|A Chain A, Crystal Structure Of Atp Sulfurylase From Penicillium
Chrysogenum
pdb|1I2D|B Chain B, Crystal Structure Of Atp Sulfurylase From Penicillium
Chrysogenum
pdb|1I2D|C Chain C, Crystal Structure Of Atp Sulfurylase From Penicillium
Chrysogenum
Length = 573
Score = 48.5 bits (114), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 101 KGCVIWITGLSGSGKSTLACALSQALHWRG-KLTYILDGDNCRHGLNRDLSFKAEDRVEN 159
+G I++TG SGK +A AL L+ +G + +L GD RH L+ +L F EDR N
Sbjct: 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTN 454
Query: 160 IRRIGSV 166
I+RI V
Sbjct: 455 IQRIAFV 461
>pdb|1M8P|A Chain A, Crystal Structure Of P. Chrysogenum Atp Sulfurylase In The
T-State
pdb|1M8P|B Chain B, Crystal Structure Of P. Chrysogenum Atp Sulfurylase In The
T-State
pdb|1M8P|C Chain C, Crystal Structure Of P. Chrysogenum Atp Sulfurylase In The
T-State
Length = 573
Score = 48.5 bits (114), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 101 KGCVIWITGLSGSGKSTLACALSQALHWRG-KLTYILDGDNCRHGLNRDLSFKAEDRVEN 159
+G I++TG SGK +A AL L+ +G + +L GD RH L+ +L F EDR N
Sbjct: 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTN 454
Query: 160 IRRIGSV 166
I+RI V
Sbjct: 455 IQRIAFV 461
>pdb|4E22|A Chain A, Structure Of Cytidine Monophosphate Kinase From Yersinia
Pseudotuberculosis
Length = 252
Score = 33.5 bits (75), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 104 VIWITGLSGSGKSTLACALSQALHWR 129
VI + G SG+GK TL AL+++L+WR
Sbjct: 29 VITVDGPSGAGKGTLCKALAESLNWR 54
>pdb|3NDB|B Chain B, Crystal Structure Of A Signal Sequence Bound To The Signal
Recognition Particle
Length = 454
Score = 33.1 bits (74), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE 154
+L +K VI + G+ GSGK+T A L++ + RG ++ D R L AE
Sbjct: 93 ELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAE 151
>pdb|2V3C|C Chain C, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
pdb|2V3C|D Chain D, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
Length = 432
Score = 33.1 bits (74), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE 154
+L +K VI + G+ GSGK+T A L++ + RG ++ D R L AE
Sbjct: 93 ELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAE 151
>pdb|2FEM|A Chain A, Mutant R188m Of The Cytidine Monophosphate Kinase From E.
Coli
pdb|2FEO|A Chain A, Mutant R188m Of The Cytidine Monophosphate Kinase From E.
Coli Complexed With Dcmp
Length = 227
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 104 VIWITGLSGSGKSTLACALSQALHW 128
VI I G SG+GK TL A+++AL W
Sbjct: 7 VITIDGPSGAGKGTLCKAMAEALQW 31
>pdb|2CMK|A Chain A, Cytidine Monophosphate Kinase In Complex With Cytidine-Di-
Phosphate
pdb|1KDO|A Chain A, Cytidine Monophosphate Kinase From E. Coli In Complex With
Cytidine Monophosphate
pdb|1KDO|B Chain B, Cytidine Monophosphate Kinase From E. Coli In Complex With
Cytidine Monophosphate
pdb|1KDP|A Chain A, Cytidine Monophosphate Kinase From E. Coli In Complex With
2'-Deoxy-Cytidine Monophosphate
pdb|1KDP|B Chain B, Cytidine Monophosphate Kinase From E. Coli In Complex With
2'-Deoxy-Cytidine Monophosphate
pdb|1KDR|A Chain A, Cytidine Monophosphate Kinase From E.Coli In Complex With
Ara-Cytidine Monophosphate
pdb|1KDR|B Chain B, Cytidine Monophosphate Kinase From E.Coli In Complex With
Ara-Cytidine Monophosphate
pdb|1KDT|A Chain A, Cytidine Monophosphate Kinase From E.Coli In Complex With
2',3'-Dideoxy-Cytidine Monophosphate
pdb|1KDT|B Chain B, Cytidine Monophosphate Kinase From E.Coli In Complex With
2',3'-Dideoxy-Cytidine Monophosphate
Length = 227
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 104 VIWITGLSGSGKSTLACALSQALHW 128
VI I G SG+GK TL A+++AL W
Sbjct: 7 VITIDGPSGAGKGTLCKAMAEALQW 31
>pdb|1CKE|A Chain A, Cmp Kinase From Escherichia Coli Free Enzyme Structure
Length = 227
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 104 VIWITGLSGSGKSTLACALSQALHW 128
VI I G SG+GK TL A+++AL W
Sbjct: 7 VITIDGPSGAGKGTLCKAMAEALQW 31
>pdb|3B9Q|A Chain A, The Crystal Structure Of Cpftsy From Arabidopsis Thaliana
Length = 302
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140
+L KNS + QL +K VI I G++G GK+T L+ L G + GD
Sbjct: 82 EMLAKKNS---KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDT 138
Query: 141 CRHGLNRDLSFKAE 154
R + L AE
Sbjct: 139 FRAAASDQLEIWAE 152
>pdb|2OG2|A Chain A, Crystal Structure Of Chloroplast Ftsy From Arabidopsis
Thaliana
Length = 359
Score = 30.8 bits (68), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140
+L KNS + QL +K VI I G++G GK+T L+ L G + GD
Sbjct: 139 EMLAKKNS---KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDT 195
Query: 141 CRHGLNRDLSFKAE 154
R + L AE
Sbjct: 196 FRAAASDQLEIWAE 209
>pdb|3DM5|A Chain A, Structures Of Srp54 And Srp19, The Two Proteins Assembling
The Ribonucleic Core Of The Signal Recognition Particle
From The Archaeon Pyrococcus Furiosus.
pdb|3DM5|B Chain B, Structures Of Srp54 And Srp19, The Two Proteins Assembling
The Ribonucleic Core Of The Signal Recognition Particle
From The Archaeon Pyrococcus Furiosus
Length = 443
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG 144
+++K ++ + G+ GSGK+T L++ RG ++ D R G
Sbjct: 96 IKEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPG 142
>pdb|1G3Q|A Chain A, Crystal Structure Analysis Of Pyrococcus Furiosus Cell
Division Atpase Mind
pdb|1G3R|A Chain A, Crystal Structure Analysis Of Pyrococcus Furiosus Cell
Division Atpase Mind
Length = 237
Score = 30.4 bits (67), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 107 ITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139
++G G+GK+T+ LS AL RG+ +DGD
Sbjct: 8 VSGKGGTGKTTVTANLSVALGDRGRKVLAVDGD 40
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 30.0 bits (66), Expect = 0.75, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 5/31 (16%)
Query: 102 GCVIWITGLSGSGKSTLAC-----ALSQALH 127
G + +TG+SGSGKSTL AL+Q LH
Sbjct: 348 GTFVAVTGVSGSGKSTLVNEVLYKALAQKLH 378
Score = 28.5 bits (62), Expect = 1.9, Method: Composition-based stats.
Identities = 12/19 (63%), Positives = 17/19 (89%)
Query: 101 KGCVIWITGLSGSGKSTLA 119
+G ++ +TGLSGSGKS+LA
Sbjct: 43 RGKLVVLTGLSGSGKSSLA 61
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 30.0 bits (66), Expect = 0.75, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 5/31 (16%)
Query: 102 GCVIWITGLSGSGKSTLAC-----ALSQALH 127
G + +TG+SGSGKSTL AL+Q LH
Sbjct: 650 GTFVAVTGVSGSGKSTLVNEVLYKALAQKLH 680
Score = 28.5 bits (62), Expect = 1.9, Method: Composition-based stats.
Identities = 12/19 (63%), Positives = 17/19 (89%)
Query: 101 KGCVIWITGLSGSGKSTLA 119
+G ++ +TGLSGSGKS+LA
Sbjct: 43 RGKLVVLTGLSGSGKSSLA 61
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 30.0 bits (66), Expect = 0.75, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 5/31 (16%)
Query: 102 GCVIWITGLSGSGKSTLAC-----ALSQALH 127
G + +TG+SGSGKSTL AL+Q LH
Sbjct: 650 GTFVAVTGVSGSGKSTLVNEVLYKALAQKLH 680
Score = 28.5 bits (62), Expect = 1.9, Method: Composition-based stats.
Identities = 12/19 (63%), Positives = 17/19 (89%)
Query: 101 KGCVIWITGLSGSGKSTLA 119
+G ++ +TGLSGSGKS+LA
Sbjct: 43 RGKLVVLTGLSGSGKSSLA 61
>pdb|2FFH|A Chain A, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|B Chain B, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|C Chain C, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
Length = 425
Score = 30.0 bits (66), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 106 WITGLSGSGKSTLACALSQALHWRGK 131
++ GL GSGK+T A L AL+++GK
Sbjct: 102 FLVGLQGSGKTTTAAKL--ALYYKGK 125
>pdb|3BFV|A Chain A, Crystal Structure Of The Chimerical Protein Capab
pdb|3BFV|B Chain B, Crystal Structure Of The Chimerical Protein Capab
Length = 271
Score = 29.6 bits (65), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139
++ + G+GKST+A L+ A G T I+DGD
Sbjct: 84 SIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGD 120
>pdb|1JPJ|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1JPN|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1JPN|B Chain B, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1RY1|U Chain U, Structure Of The Signal Recognition Particle Interacting
With The Elongation-Arrested Ribosome
Length = 296
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 106 WITGLSGSGKSTLACALSQALHWRGK 131
++ GL GSGK+T A L AL+++GK
Sbjct: 102 FLVGLQGSGKTTTAAKL--ALYYKGK 125
>pdb|3NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
pdb|3NG1|B Chain B, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
pdb|1OKK|A Chain A, Homo-Heterodimeric Complex Of The Srp Gtpases
pdb|2CNW|A Chain A, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2CNW|B Chain B, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2CNW|C Chain C, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2J7P|A Chain A, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
And Ftsy
pdb|2J7P|B Chain B, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
And Ftsy
pdb|1NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
pdb|2XKV|A Chain A, Atomic Model Of The Srp-Ftsy Early Conformation
Length = 294
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 106 WITGLSGSGKSTLACALSQALHWRGK 131
++ GL GSGK+T A L AL+++GK
Sbjct: 102 FLVGLQGSGKTTTAAKL--ALYYKGK 125
>pdb|1RZ3|A Chain A, Structure Of A Possible Uridine Kinase From Bacillus
Stearothermophilus
Length = 201
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 19/27 (70%)
Query: 104 VIWITGLSGSGKSTLACALSQALHWRG 130
V+ I GLS SGK+TLA LSQ L +G
Sbjct: 24 VLGIDGLSRSGKTTLANQLSQTLREQG 50
>pdb|1O87|A Chain A, A New Mggdp Complex Of The Ffh Ng Domain
pdb|1O87|B Chain B, A New Mggdp Complex Of The Ffh Ng Domain
pdb|2C04|A Chain A, Gmppcp Complex Of Srp Gtpase Ffh Ng Domain At Ultra-High
Resolution
pdb|2C04|B Chain B, Gmppcp Complex Of Srp Gtpase Ffh Ng Domain At Ultra-High
Resolution
pdb|2J45|A Chain A, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
pdb|2J45|B Chain B, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
pdb|2J46|A Chain A, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
pdb|2J46|B Chain B, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
Length = 297
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 106 WITGLSGSGKSTLACALSQALHWRGK 131
++ GL GSGK+T A L AL+++GK
Sbjct: 102 FLVGLQGSGKTTTAAKL--ALYYKGK 125
>pdb|2C03|A Chain A, Gdp Complex Of Srp Gtpase Ffh Ng Domain
pdb|2C03|B Chain B, Gdp Complex Of Srp Gtpase Ffh Ng Domain
Length = 297
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 106 WITGLSGSGKSTLACALSQALHWRGK 131
++ GL GSGK+T A L AL+++GK
Sbjct: 102 FLVGLQGSGKTTTAAKL--ALYYKGK 125
>pdb|1RJ9|B Chain B, Structure Of The Heterodimer Of The Conserved Gtpase
Domains Signal Recognition Particle (Ffh) And Its
Receptor (Ftsy)
Length = 300
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 106 WITGLSGSGKSTLACALSQALHWRGK 131
++ GL GSGK+T A L AL+++GK
Sbjct: 102 FLVGLQGSGKTTTAAKL--ALYYKGK 125
>pdb|1LS1|A Chain A, T. Aquaticus Ffh Ng Domain At 1.1a Resolution
Length = 295
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 106 WITGLSGSGKSTLACALSQALHWRGK 131
++ GL GSGK+T A L AL+++GK
Sbjct: 102 FLVGLQGSGKTTTAAKL--ALYYKGK 125
>pdb|2NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
Length = 293
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 106 WITGLSGSGKSTLACALSQALHWRGK 131
++ GL GSGK+T A L AL+++GK
Sbjct: 101 FLVGLQGSGKTTTAAKL--ALYYKGK 124
>pdb|1FFH|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
Length = 294
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 106 WITGLSGSGKSTLACALSQALHWRGK 131
++ GL GSGK+T A L AL+++GK
Sbjct: 101 FLVGLQGSGKTTTAAKL--ALYYKGK 124
>pdb|1A7J|A Chain A, Phosphoribulokinase From Rhodobacter Spheroides
Length = 290
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE 154
+ +K +I +TG SG+G ST+ Q G ++GD H NR KAE
Sbjct: 1 MSKKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGD-AFHRFNR-ADMKAE 55
>pdb|2F6R|A Chain A, Crystal Structure Of Bifunctional Coenzyme A Synthase (coa
Synthase): (18044849) From Mus Musculus At 1.70 A
Resolution
Length = 281
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH 143
V+ +TG+SGSGKS++A L + YI+D D+ H
Sbjct: 77 VLGLTGISGSGKSSVAQRL------KNLGAYIIDSDHLGH 110
>pdb|2GZA|A Chain A, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
pdb|2GZA|B Chain B, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
pdb|2GZA|C Chain C, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
Length = 361
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILD 137
VI + G +GSGK+TL AL Q + + +L I D
Sbjct: 177 VIVVAGETGSGKTTLMKALMQEIPFDQRLITIED 210
>pdb|1F48|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1IHU|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase In Complex With
Mg-Adp-Alf3
pdb|1II0|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1II0|B Chain B, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1II9|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
pdb|1II9|B Chain B, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
Length = 589
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141
Q LQ ++ TG G GK++++CA + L +GK ++ D
Sbjct: 2 QFLQNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPA 47
>pdb|2IY3|A Chain A, Structure Of The E. Coli Signal Recognition Particle Bound
To A Translating Ribosome
Length = 432
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 106 WITGLSGSGKSTLACALSQALHWRGK 131
++ GL GSGK+T A L AL+++GK
Sbjct: 102 FLVGLQGSGKTTTAAKL--ALYYKGK 125
>pdb|3HJN|A Chain A, Crystal Structure Of Thymidylate Kinase In Complex With
Dtdp And Adp From Thermotoga Maritima
pdb|3HJN|B Chain B, Crystal Structure Of Thymidylate Kinase In Complex With
Dtdp And Adp From Thermotoga Maritima
Length = 197
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 103 CVIWITGLSGSGKSTLACALSQALHWRGK 131
I G+ GSGKST L+Q L RGK
Sbjct: 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGK 29
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 28.9 bits (63), Expect = 1.6, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 6/41 (14%)
Query: 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126
+N++D D + L G + +TG+SGSGKSTL +SQAL
Sbjct: 510 RNNLDNLDVRFPL---GVMTSVTGVSGSGKSTL---VSQAL 544
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN 159
+KG + I G SGSGKSTL L+ G L +G G D + + E +
Sbjct: 28 KKGEFVSIIGASGSGKSTL-------LYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80
Query: 160 IRRIGSVF 167
R++G VF
Sbjct: 81 NRKLGFVF 88
>pdb|1MS5|A Chain A, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase,
Soaked With N-Acetylneuraminyl-A-2,3-Thio-Galactoside
(Na-S-Gal)
pdb|1MS5|B Chain B, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase,
Soaked With N-Acetylneuraminyl-A-2,3-Thio-Galactoside
(Na-S-Gal)
Length = 648
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 112 GSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED 155
G G+S C+ AL W GKL N R R L +++ D
Sbjct: 234 GKGRSAFGCSEPVALEWEGKLII-----NTRVDYRRRLVYESSD 272
>pdb|1S0I|A Chain A, Trypanosoma Cruzi Trans-Sialidase In Complex With Sialyl-
Lactose (Michaelis Complex)
pdb|1S0J|A Chain A, Trypanosoma Cruzi Trans-Sialidase In Complex With Munana
(Michaelis Complex)
Length = 648
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 112 GSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED 155
G G+S C+ AL W GKL N R R L +++ D
Sbjct: 234 GKGRSAFGCSEPVALEWEGKLII-----NTRVDYRRRLVYESSD 272
>pdb|1MR5|A Chain A, Orthorhombic Form Of Trypanosoma Cruzi Trans-Sialidase
pdb|1MS0|A Chain A, Monoclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With 3-Deoxy-2,3-Dehydro-N-Acetylneuraminic Acid
(Dana)and Lactose
pdb|1MS0|B Chain B, Monoclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With 3-Deoxy-2,3-Dehydro-N-Acetylneuraminic Acid
(Dana)and Lactose
pdb|1MS1|A Chain A, Monoclinic Form Of Trypanosoma Cruzi Trans-sialidase, In
Complex With 3-deoxy-2,3-dehydro-n-acetylneuraminic Acid
(dana)
pdb|1MS1|B Chain B, Monoclinic Form Of Trypanosoma Cruzi Trans-sialidase, In
Complex With 3-deoxy-2,3-dehydro-n-acetylneuraminic Acid
(dana)
pdb|1MS3|A Chain A, Monoclinic Form Of Trypanosoma Cruzi Trans-Sialidase
pdb|1MS3|B Chain B, Monoclinic Form Of Trypanosoma Cruzi Trans-Sialidase
pdb|1MS4|A Chain A, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase
pdb|1MS4|B Chain B, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase
pdb|1MS8|A Chain A, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With 3-Deoxy-2,3-Dehydro-N-Acetylneuraminic Acid
(Dana)
pdb|1MS8|B Chain B, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With 3-Deoxy-2,3-Dehydro-N-Acetylneuraminic Acid
(Dana)
pdb|1MS9|A Chain A, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With Lactose
pdb|1MS9|B Chain B, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With Lactose
pdb|2AH2|A Chain A, Trypanosoma Cruzi Trans-Sialidase In Complex With
2,3-Difluorosialic Acid (Covalent Intermediate)
pdb|3B69|A Chain A, T Cruzi Trans-Sialidase Complex With Benzoylated Nana
Derivative
pdb|3OPZ|A Chain A, Crystal Structure Of Trans-Sialidase In Complex With The
Fab Fragment Of A Neutralizing Monoclonal Igg Antibody
pdb|3OPZ|B Chain B, Crystal Structure Of Trans-Sialidase In Complex With The
Fab Fragment Of A Neutralizing Monoclonal Igg Antibody
pdb|3OPZ|C Chain C, Crystal Structure Of Trans-Sialidase In Complex With The
Fab Fragment Of A Neutralizing Monoclonal Igg Antibody
Length = 648
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 112 GSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED 155
G G+S C+ AL W GKL N R R L +++ D
Sbjct: 234 GKGRSAFGCSEPVALEWEGKLII-----NTRVDYRRRLVYESSD 272
>pdb|3PJQ|A Chain A, Trypanosoma Cruzi Trans-Sialidase-Like Inactive Isoform
(Including The Natural Mutation Tyr342his) In Complex
With Lactose
Length = 648
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 112 GSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED 155
G G+S C+ AL W GKL N R R L +++ D
Sbjct: 234 GKGRSAFGCSEPVALEWEGKLII-----NTRVDYRRRLVYESSD 272
>pdb|3Q9L|A Chain A, The Structure Of The Dimeric E.Coli Mind-Atp Complex
pdb|3Q9L|B Chain B, The Structure Of The Dimeric E.Coli Mind-Atp Complex
pdb|3R9I|A Chain A, 2.6a Resolution Structure Of Mind Complexed With Mine
(12-31) Peptide
pdb|3R9I|B Chain B, 2.6a Resolution Structure Of Mind Complexed With Mine
(12-31) Peptide
pdb|3R9I|C Chain C, 2.6a Resolution Structure Of Mind Complexed With Mine
(12-31) Peptide
pdb|3R9I|D Chain D, 2.6a Resolution Structure Of Mind Complexed With Mine
(12-31) Peptide
pdb|3R9J|A Chain A, 4.3a Resolution Structure Of A Mind-Mine(I24n) Protein
Complex
pdb|3R9J|B Chain B, 4.3a Resolution Structure Of A Mind-Mine(I24n) Protein
Complex
Length = 260
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILD 137
++ +G G GK+T + A++ L +GK T ++D
Sbjct: 4 IIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVID 38
>pdb|3DMD|B Chain B, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|A Chain A, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3E70|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
Length = 328
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Query: 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN 159
+K VI G +GSGK+T L+ L G I D R G L E+
Sbjct: 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLE-------EH 179
Query: 160 IRRIG 164
+RIG
Sbjct: 180 AKRIG 184
>pdb|1ION|A Chain A, The Septum Site-Determining Protein Mind Complexed With
Mg-Adp From Pyrococcus Horikoshii Ot3
Length = 243
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 107 ITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139
++G G+GK+T+ LS AL G+ +DGD
Sbjct: 8 VSGKGGTGKTTVTANLSVALGEXGRKVLAVDGD 40
>pdb|1KO4|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KO4|B Chain B, Crystal Structure Of Gluconate Kinase
Length = 175
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139
+ + G+SGSGKS +A ++ LH LDGD
Sbjct: 10 IYVLXGVSGSGKSAVASEVAHQLH-----AAFLDGD 40
>pdb|1KNQ|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KNQ|B Chain B, Crystal Structure Of Gluconate Kinase
pdb|1KO1|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KO1|B Chain B, Crystal Structure Of Gluconate Kinase
pdb|1KO5|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KO5|B Chain B, Crystal Structure Of Gluconate Kinase
pdb|1KO8|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KO8|B Chain B, Crystal Structure Of Gluconate Kinase
pdb|1KOF|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KOF|B Chain B, Crystal Structure Of Gluconate Kinase
Length = 175
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139
+ + G+SGSGKS +A ++ LH LDGD
Sbjct: 10 IYVLMGVSGSGKSAVASEVAHQLH-----AAFLDGD 40
>pdb|3DM9|B Chain B, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
Length = 328
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Query: 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN 159
+K VI G +GSGK+T L+ L G I D R G L E+
Sbjct: 127 EKPYVIXFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLE-------EH 179
Query: 160 IRRIG 164
+RIG
Sbjct: 180 AKRIG 184
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141
++G VI I G SGSGKSTL L Q + ++DG +
Sbjct: 27 KQGEVIGIVGRSGSGKSTL-TKLIQRFYIPENGQVLIDGHDL 67
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141
++G VI I G SGSGKSTL L Q + ++DG +
Sbjct: 29 KQGEVIGIVGRSGSGKSTL-TKLIQRFYIPENGQVLIDGHDL 69
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141
++G VI I G SGSGKSTL L Q + ++DG +
Sbjct: 33 KQGEVIGIVGRSGSGKSTL-TKLIQRFYIPENGQVLIDGHDL 73
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141
++G VI I G SGSGKSTL L Q + ++DG +
Sbjct: 27 KQGEVIGIVGRSGSGKSTL-TKLIQRFYIPENGQVLIDGHDL 67
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141
++G VI I G SGSGKSTL L Q + ++DG +
Sbjct: 33 KQGEVIGIVGRSGSGKSTL-TKLIQRFYIPENGQVLIDGHDL 73
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141
++G VI I G SGSGKSTL L Q + ++DG +
Sbjct: 33 KQGEVIGIVGRSGSGKSTL-TKLIQRFYIPENGQVLIDGHDL 73
>pdb|1KO7|A Chain A, X-Ray Structure Of The Hpr KinasePHOSPHATASE FROM
Staphylococcus Xylosus At 1.95 A Resolution
pdb|1KO7|B Chain B, X-Ray Structure Of The Hpr KinasePHOSPHATASE FROM
Staphylococcus Xylosus At 1.95 A Resolution
Length = 314
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 42 RSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQK 101
R L+P + L E+A E+ I+ + + +++ T L H+ + L+
Sbjct: 88 RDLEPPEELIEAAKE---HETPLIT-SKIATTQLMSRLTTFLEHELARTTSLHGVLVDVY 143
Query: 102 GCVIWITGLSGSGKSTLACALSQALH 127
G + ITG SG GKS A L + H
Sbjct: 144 GVGVLITGDSGIGKSETALELIKRGH 169
>pdb|2PH1|A Chain A, Crystal Structure Of Nucleotide-Binding Protein Af2382
From Archaeoglobus Fulgidus, Northeast Structural
Genomics Target Gr165
Length = 262
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 85 HKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139
K D+ +++L + K + +G G GKST+ L+ +GK ILD D
Sbjct: 2 QKRVTDEEIKERLGKIKSRIAVXSGKGGVGKSTVTALLAVHYARQGKKVGILDAD 56
>pdb|2J37|W Chain W, Model Of Mammalian Srp Bound To 80s Rncs
Length = 504
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG 144
K VI GL GSGK+T L+ +G T ++ D R G
Sbjct: 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAG 143
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 26.6 bits (57), Expect = 7.1, Method: Composition-based stats.
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 101 KGCVIWITGLSGSGKSTLA 119
K ++ ITG+SGSGKS+LA
Sbjct: 23 KNRLVVITGVSGSGKSSLA 41
>pdb|1W44|A Chain A, P4 Protein From Bacteriophage Phi12 In Complex With Adp
pdb|1W44|B Chain B, P4 Protein From Bacteriophage Phi12 In Complex With Adp
pdb|1W44|C Chain C, P4 Protein From Bacteriophage Phi12 In Complex With Adp
pdb|1W46|A Chain A, P4 Protein From Bacteriophage Phi12 In Complex With Adp
And Mg
pdb|1W46|B Chain B, P4 Protein From Bacteriophage Phi12 In Complex With Adp
And Mg
pdb|1W46|C Chain C, P4 Protein From Bacteriophage Phi12 In Complex With Adp
And Mg
pdb|1W47|A Chain A, P4 Protein From Bacteriophage Phi12 In Complex With Adp
And Mn
pdb|1W47|B Chain B, P4 Protein From Bacteriophage Phi12 In Complex With Adp
And Mn
pdb|1W47|C Chain C, P4 Protein From Bacteriophage Phi12 In Complex With Adp
And Mn
pdb|1W48|A Chain A, P4 Protein From Bacteriophage Phi12 In Complex With Ampcpp
pdb|1W48|B Chain B, P4 Protein From Bacteriophage Phi12 In Complex With Ampcpp
pdb|1W48|C Chain C, P4 Protein From Bacteriophage Phi12 In Complex With Ampcpp
pdb|1W49|A Chain A, P4 Protein From Bacteriophage Phi12 In Complex With Ampcpp
And Mg
pdb|1W49|B Chain B, P4 Protein From Bacteriophage Phi12 In Complex With Ampcpp
And Mg
pdb|1W49|C Chain C, P4 Protein From Bacteriophage Phi12 In Complex With Ampcpp
And Mg
pdb|1W4A|A Chain A, P4 Protein From Phi12 In Complex With Ampcpp And Mn
pdb|1W4A|B Chain B, P4 Protein From Phi12 In Complex With Ampcpp And Mn
pdb|1W4A|C Chain C, P4 Protein From Phi12 In Complex With Ampcpp And Mn
pdb|1W4B|A Chain A, P4 Protein From Phi12 In Complex With Product (Ampcpp Mg
22c)
pdb|1W4B|B Chain B, P4 Protein From Phi12 In Complex With Product (Ampcpp Mg
22c)
pdb|1W4B|C Chain C, P4 Protein From Phi12 In Complex With Product (Ampcpp Mg
22c)
pdb|1W4C|A Chain A, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|B Chain B, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|C Chain C, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|D Chain D, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|E Chain E, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|F Chain F, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|G Chain G, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|H Chain H, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|I Chain I, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|J Chain J, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|K Chain K, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|L Chain L, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|M Chain M, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|N Chain N, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|O Chain O, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|P Chain P, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|Q Chain Q, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|R Chain R, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|S Chain S, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|T Chain T, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|U Chain U, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|V Chain V, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|W Chain W, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|X Chain X, P4 Protein From Bacteriophage Phi12 Apo State
Length = 331
Score = 26.6 bits (57), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED 155
G VI +TG SGK+ L AL +AL + K + G+ G N D + +D
Sbjct: 124 GMVI-VTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLS-GYNTDFNVFVDD 175
>pdb|2VHJ|A Chain A, P4 Protein From Bacteriophage Phi12 S252a Mutant In
Complex With Adp
pdb|2VHJ|B Chain B, P4 Protein From Bacteriophage Phi12 S252a Mutant In
Complex With Adp
pdb|2VHJ|C Chain C, P4 Protein From Bacteriophage Phi12 S252a Mutant In
Complex With Adp
pdb|2VHQ|A Chain A, P4 Protein From Bacteriophage Phi12 S252a Mutant In
Complex With Atp And Mg
pdb|2VHQ|B Chain B, P4 Protein From Bacteriophage Phi12 S252a Mutant In
Complex With Atp And Mg
pdb|2VHQ|C Chain C, P4 Protein From Bacteriophage Phi12 S252a Mutant In
Complex With Atp And Mg
Length = 331
Score = 26.6 bits (57), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED 155
G VI +TG SGK+ L AL +AL + K + G+ G N D + +D
Sbjct: 124 GMVI-VTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLS-GYNTDFNVFVDD 175
>pdb|2VHT|A Chain A, P4 Protein From Bacteriophage Phi12 R279a Mutant In
Complex With Atp
pdb|2VHT|B Chain B, P4 Protein From Bacteriophage Phi12 R279a Mutant In
Complex With Atp
pdb|2VHT|C Chain C, P4 Protein From Bacteriophage Phi12 R279a Mutant In
Complex With Atp
Length = 331
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED 155
G VI +TG SGK+ L AL +AL + K + G+ G N D + +D
Sbjct: 124 GMVI-VTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLS-GYNTDFNVFVDD 175
>pdb|2VHC|A Chain A, P4 Protein From Bacteriophage Phi12 N234g Mutant In
Complex With Ampcpp And Mn
pdb|2VHC|B Chain B, P4 Protein From Bacteriophage Phi12 N234g Mutant In
Complex With Ampcpp And Mn
pdb|2VHC|C Chain C, P4 Protein From Bacteriophage Phi12 N234g Mutant In
Complex With Ampcpp And Mn
Length = 331
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED 155
G VI +TG SGK+ L AL +AL + K + G+ G N D + +D
Sbjct: 124 GMVI-VTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLS-GYNTDFNVFVDD 175
>pdb|3VAA|A Chain A, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
pdb|3VAA|B Chain B, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
pdb|3VAA|C Chain C, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
Length = 199
Score = 26.6 bits (57), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 105 IWITGLSGSGKSTLACALSQALH 127
I++TG G+GK+TL A ++ L+
Sbjct: 28 IFLTGYMGAGKTTLGKAFARKLN 50
>pdb|2VHU|A Chain A, P4 Protein From Bacteriophage Phi12 K241c Mutant In
Complex With Adp And Mgcl
pdb|2VHU|B Chain B, P4 Protein From Bacteriophage Phi12 K241c Mutant In
Complex With Adp And Mgcl
pdb|2VHU|C Chain C, P4 Protein From Bacteriophage Phi12 K241c Mutant In
Complex With Adp And Mgcl
Length = 331
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED 155
G VI +TG SGK+ L AL +AL + K + G+ G N D + +D
Sbjct: 124 GMVI-VTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLS-GYNTDFNVFVDD 175
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.131 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,404,816
Number of Sequences: 62578
Number of extensions: 153160
Number of successful extensions: 739
Number of sequences better than 100.0: 83
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 666
Number of HSP's gapped (non-prelim): 90
length of query: 176
length of database: 14,973,337
effective HSP length: 92
effective length of query: 84
effective length of database: 9,216,161
effective search space: 774157524
effective search space used: 774157524
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)