Query 030515
Match_columns 176
No_of_seqs 212 out of 1583
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 14:53:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030515.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030515hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 99.9 6.4E-25 1.4E-29 179.8 8.6 88 70-175 2-90 (240)
2 COG4175 ProV ABC-type proline/ 99.9 4.3E-25 9.4E-30 189.2 6.5 111 34-173 6-118 (386)
3 COG1135 AbcC ABC-type metal io 99.9 9.8E-23 2.1E-27 174.1 9.0 94 70-173 1-95 (339)
4 COG3638 ABC-type phosphate/pho 99.9 4.5E-22 9.8E-27 164.7 9.2 90 69-173 2-92 (258)
5 COG1136 SalX ABC-type antimicr 99.9 6.3E-22 1.4E-26 163.4 9.7 92 71-174 2-95 (226)
6 COG3842 PotA ABC-type spermidi 99.8 1.8E-21 4E-26 169.6 7.6 86 68-174 3-89 (352)
7 COG3839 MalK ABC-type sugar tr 99.8 3.8E-21 8.3E-26 166.9 8.4 85 68-172 1-86 (338)
8 TIGR03415 ABC_choXWV_ATP choli 99.8 7.7E-21 1.7E-25 167.7 9.4 109 34-171 2-116 (382)
9 COG1125 OpuBA ABC-type proline 99.8 3.6E-21 7.7E-26 161.3 6.6 83 70-170 1-84 (309)
10 COG1127 Ttg2A ABC-type transpo 99.8 9.9E-21 2.1E-25 157.1 9.2 88 68-170 6-94 (263)
11 COG2884 FtsE Predicted ATPase 99.8 1.3E-20 2.8E-25 152.0 6.5 90 70-173 1-91 (223)
12 COG1117 PstB ABC-type phosphat 99.8 3.3E-20 7.1E-25 152.1 7.6 85 70-170 7-97 (253)
13 COG1120 FepC ABC-type cobalami 99.8 9.6E-20 2.1E-24 153.0 8.8 78 81-170 7-85 (258)
14 KOG0635 Adenosine 5'-phosphosu 99.8 9.3E-21 2E-25 148.3 1.7 96 78-173 7-102 (207)
15 COG1116 TauB ABC-type nitrate/ 99.8 2.1E-19 4.6E-24 149.6 8.6 79 70-171 3-82 (248)
16 TIGR02314 ABC_MetN D-methionin 99.8 4.1E-19 9E-24 154.6 10.2 92 71-174 2-94 (343)
17 COG1124 DppF ABC-type dipeptid 99.8 5.1E-19 1.1E-23 146.9 8.6 91 69-172 2-93 (252)
18 PRK10070 glycine betaine trans 99.8 8.4E-19 1.8E-23 155.6 9.8 108 34-170 6-115 (400)
19 COG1118 CysA ABC-type sulfate/ 99.8 4.8E-19 1E-23 151.4 6.8 86 71-174 3-89 (345)
20 PRK11308 dppF dipeptide transp 99.8 2.9E-18 6.3E-23 148.2 10.9 95 68-171 3-102 (327)
21 COG4181 Predicted ABC-type tra 99.8 1.7E-18 3.7E-23 138.4 7.7 93 70-174 6-100 (228)
22 PRK15079 oligopeptide ABC tran 99.8 5.3E-18 1.1E-22 146.9 10.7 95 67-170 5-107 (331)
23 cd03261 ABC_Org_Solvent_Resist 99.8 4.2E-18 9.1E-23 139.5 9.3 83 73-170 3-86 (235)
24 PRK11432 fbpC ferric transport 99.7 3E-18 6.6E-23 149.6 8.5 85 67-171 3-88 (351)
25 PRK11022 dppD dipeptide transp 99.7 6.5E-18 1.4E-22 145.9 10.4 93 68-171 1-99 (326)
26 PRK11153 metN DL-methionine tr 99.7 5.6E-18 1.2E-22 147.2 10.0 90 71-171 2-92 (343)
27 TIGR00960 3a0501s02 Type II (G 99.7 5E-18 1.1E-22 137.2 9.0 87 71-170 2-89 (216)
28 TIGR03265 PhnT2 putative 2-ami 99.7 3.2E-18 6.8E-23 149.5 8.3 86 68-174 2-88 (353)
29 COG0444 DppD ABC-type dipeptid 99.7 4.3E-18 9.4E-23 146.1 8.9 92 71-173 2-100 (316)
30 PRK11650 ugpC glycerol-3-phosp 99.7 3.3E-18 7.1E-23 149.6 8.3 86 69-174 2-88 (356)
31 TIGR02673 FtsE cell division A 99.7 8.2E-18 1.8E-22 135.7 9.7 86 71-170 2-88 (214)
32 COG3845 ABC-type uncharacteriz 99.7 4.7E-18 1E-22 152.3 8.9 85 70-171 4-89 (501)
33 COG1122 CbiO ABC-type cobalt t 99.7 7.2E-18 1.6E-22 140.1 9.4 89 70-175 3-93 (235)
34 TIGR02315 ABC_phnC phosphonate 99.7 8.4E-18 1.8E-22 138.0 9.5 85 71-170 2-88 (243)
35 PRK09473 oppD oligopeptide tra 99.7 1.2E-17 2.6E-22 144.5 10.9 95 66-171 8-107 (330)
36 PRK15093 antimicrobial peptide 99.7 1E-17 2.2E-22 144.8 10.3 93 68-171 1-99 (330)
37 PRK10908 cell division protein 99.7 1.1E-17 2.3E-22 136.0 9.6 86 71-170 2-88 (222)
38 COG4598 HisP ABC-type histidin 99.7 2.3E-18 4.9E-23 138.8 5.4 94 70-171 6-103 (256)
39 PRK11629 lolD lipoprotein tran 99.7 1.4E-17 3.1E-22 136.3 10.3 90 70-170 5-96 (233)
40 PRK13537 nodulation ABC transp 99.7 1.1E-17 2.3E-22 143.3 9.5 82 70-170 7-89 (306)
41 TIGR01186 proV glycine betaine 99.7 8.9E-18 1.9E-22 147.3 9.1 77 86-171 3-81 (363)
42 PRK13536 nodulation factor exp 99.7 1.2E-17 2.7E-22 145.1 9.9 84 68-170 39-123 (340)
43 COG0529 CysC Adenylylsulfate k 99.7 6.6E-19 1.4E-23 140.5 1.8 92 81-172 2-93 (197)
44 cd03258 ABC_MetN_methionine_tr 99.7 1.5E-17 3.3E-22 135.9 9.8 85 71-170 2-91 (233)
45 COG0410 LivF ABC-type branched 99.7 9.6E-18 2.1E-22 138.4 8.6 83 70-169 3-86 (237)
46 PRK10895 lipopolysaccharide AB 99.7 1.7E-17 3.7E-22 136.3 10.1 85 69-170 2-87 (241)
47 PRK11831 putative ABC transpor 99.7 1.8E-17 4E-22 138.9 10.2 87 69-170 6-93 (269)
48 PRK09536 btuD corrinoid ABC tr 99.7 1.5E-17 3.2E-22 147.7 9.7 85 69-171 2-87 (402)
49 cd03292 ABC_FtsE_transporter F 99.7 1.7E-17 3.8E-22 133.6 9.3 83 73-170 3-87 (214)
50 cd03224 ABC_TM1139_LivF_branch 99.7 1.8E-17 3.8E-22 134.2 9.3 81 73-170 3-84 (222)
51 COG1131 CcmA ABC-type multidru 99.7 1.6E-17 3.4E-22 141.8 9.3 83 70-171 4-88 (293)
52 PRK14250 phosphate ABC transpo 99.7 1.8E-17 3.8E-22 136.7 9.2 84 69-170 2-86 (241)
53 PRK09452 potA putrescine/sperm 99.7 1.2E-17 2.6E-22 147.1 8.5 84 68-171 12-96 (375)
54 cd03262 ABC_HisP_GlnQ_permease 99.7 1.9E-17 4.1E-22 133.3 8.9 82 73-170 3-85 (213)
55 PRK13638 cbiO cobalt transport 99.7 1.5E-17 3.2E-22 139.5 8.5 84 71-170 2-86 (271)
56 cd03257 ABC_NikE_OppD_transpor 99.7 2.2E-17 4.9E-22 134.0 9.3 85 71-170 2-91 (228)
57 TIGR02211 LolD_lipo_ex lipopro 99.7 2.6E-17 5.6E-22 133.3 9.6 89 71-170 2-92 (221)
58 cd03256 ABC_PhnC_transporter A 99.7 2.5E-17 5.4E-22 134.9 9.2 76 86-170 10-87 (241)
59 PRK13637 cbiO cobalt transport 99.7 2.7E-17 5.9E-22 139.4 9.7 90 71-171 3-93 (287)
60 COG1123 ATPase components of v 99.7 1.7E-17 3.7E-22 151.0 8.8 95 67-171 277-377 (539)
61 PRK10851 sulfate/thiosulfate t 99.7 1.6E-17 3.4E-22 145.2 8.3 80 71-170 3-83 (353)
62 PRK10247 putative ABC transpor 99.7 3.3E-17 7.2E-22 133.8 9.7 83 70-170 7-90 (225)
63 PRK11607 potG putrescine trans 99.7 1.7E-17 3.6E-22 146.2 8.5 86 68-174 17-103 (377)
64 PRK11614 livF leucine/isoleuci 99.7 3.4E-17 7.5E-22 134.2 9.8 86 68-170 3-89 (237)
65 COG1121 ZnuC ABC-type Mn/Zn tr 99.7 2E-17 4.3E-22 138.7 8.4 81 69-170 3-84 (254)
66 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.7 2.7E-17 5.7E-22 133.0 8.9 73 89-170 17-91 (218)
67 TIGR02769 nickel_nikE nickel i 99.7 3.6E-17 7.8E-22 136.7 9.8 92 70-170 2-97 (265)
68 PRK10419 nikE nickel transport 99.7 3.9E-17 8.4E-22 137.0 10.0 94 68-170 1-98 (268)
69 PRK13647 cbiO cobalt transport 99.7 2.9E-17 6.2E-22 138.3 9.2 85 70-171 4-89 (274)
70 PRK13635 cbiO cobalt transport 99.7 2.9E-17 6.2E-22 138.7 9.2 86 70-171 5-91 (279)
71 cd03263 ABC_subfamily_A The AB 99.7 2.8E-17 6E-22 133.1 8.7 79 73-170 3-84 (220)
72 cd03266 ABC_NatA_sodium_export 99.7 3.2E-17 6.8E-22 132.6 8.9 81 71-170 2-87 (218)
73 cd03219 ABC_Mj1267_LivG_branch 99.7 3E-17 6.5E-22 134.2 8.9 74 86-170 10-84 (236)
74 PRK11000 maltose/maltodextrin 99.7 2E-17 4.3E-22 145.1 8.3 82 69-170 2-84 (369)
75 PRK09493 glnQ glutamine ABC tr 99.7 3.8E-17 8.2E-22 134.2 9.4 84 71-170 2-86 (240)
76 PRK13633 cobalt transporter AT 99.7 3.9E-17 8.4E-22 137.8 9.7 91 70-171 4-95 (280)
77 TIGR03410 urea_trans_UrtE urea 99.7 3.3E-17 7.3E-22 133.6 9.0 81 73-170 3-84 (230)
78 TIGR01166 cbiO cobalt transpor 99.7 2.6E-17 5.6E-22 130.8 8.0 74 87-170 3-77 (190)
79 PRK13646 cbiO cobalt transport 99.7 3.8E-17 8.3E-22 138.3 9.6 92 71-171 3-95 (286)
80 PRK13652 cbiO cobalt transport 99.7 4E-17 8.7E-22 137.5 9.6 86 68-170 1-87 (277)
81 PRK13650 cbiO cobalt transport 99.7 3.4E-17 7.5E-22 138.1 9.2 87 70-171 4-91 (279)
82 PRK10584 putative ABC transpor 99.7 6.5E-17 1.4E-21 131.7 10.6 91 69-170 5-97 (228)
83 TIGR01288 nodI ATP-binding ABC 99.7 3.8E-17 8.3E-22 139.3 9.4 82 70-170 4-86 (303)
84 cd03265 ABC_DrrA DrrA is the A 99.7 3.5E-17 7.6E-22 132.8 8.5 80 72-170 2-82 (220)
85 cd03225 ABC_cobalt_CbiO_domain 99.7 3E-17 6.6E-22 132.1 8.1 73 86-170 9-84 (211)
86 cd03218 ABC_YhbG The ABC trans 99.7 4E-17 8.8E-22 133.1 8.9 81 73-170 3-84 (232)
87 PRK13540 cytochrome c biogenes 99.7 4.1E-17 8.8E-22 130.9 8.5 81 71-170 2-83 (200)
88 PRK14247 phosphate ABC transpo 99.7 5.3E-17 1.1E-21 134.1 9.3 85 69-171 2-92 (250)
89 cd03259 ABC_Carb_Solutes_like 99.7 2.9E-17 6.3E-22 132.5 7.5 78 73-170 3-81 (213)
90 PRK13634 cbiO cobalt transport 99.7 5.5E-17 1.2E-21 137.7 9.5 92 71-171 3-95 (290)
91 TIGR00972 3a0107s01c2 phosphat 99.7 4.5E-17 9.7E-22 134.5 8.7 84 71-170 2-91 (247)
92 PRK11264 putative amino-acid A 99.7 7.1E-17 1.5E-21 133.2 9.8 91 70-170 3-94 (250)
93 PRK13636 cbiO cobalt transport 99.7 6.3E-17 1.4E-21 136.8 9.7 87 70-171 5-92 (283)
94 PRK13644 cbiO cobalt transport 99.7 5.2E-17 1.1E-21 136.7 9.1 85 71-171 2-87 (274)
95 PRK14242 phosphate transporter 99.7 6.8E-17 1.5E-21 133.7 9.7 86 69-170 5-96 (253)
96 TIGR03411 urea_trans_UrtD urea 99.7 7.2E-17 1.6E-21 132.6 9.8 84 70-170 2-86 (242)
97 cd03260 ABC_PstB_phosphate_tra 99.7 4.9E-17 1.1E-21 132.4 8.5 82 73-170 3-90 (227)
98 cd03226 ABC_cobalt_CbiO_domain 99.7 4.5E-17 9.7E-22 130.9 8.2 70 86-170 9-80 (205)
99 cd03230 ABC_DR_subfamily_A Thi 99.7 6.5E-17 1.4E-21 127.2 8.9 79 73-170 3-82 (173)
100 cd03216 ABC_Carb_Monos_I This 99.7 6.6E-17 1.4E-21 126.4 8.8 79 73-168 3-82 (163)
101 cd03268 ABC_BcrA_bacitracin_re 99.7 5.4E-17 1.2E-21 130.5 8.5 79 72-170 2-81 (208)
102 TIGR03005 ectoine_ehuA ectoine 99.7 6.7E-17 1.5E-21 133.8 9.2 90 73-170 3-96 (252)
103 TIGR03522 GldA_ABC_ATP gliding 99.7 7.2E-17 1.6E-21 137.6 9.6 81 71-170 3-84 (301)
104 PRK13643 cbiO cobalt transport 99.7 7.3E-17 1.6E-21 136.8 9.4 92 71-171 2-94 (288)
105 TIGR03608 L_ocin_972_ABC putat 99.7 6.1E-17 1.3E-21 129.7 8.5 76 86-170 8-85 (206)
106 PRK13632 cbiO cobalt transport 99.7 7E-17 1.5E-21 135.5 9.0 86 69-170 6-92 (271)
107 PRK14273 phosphate ABC transpo 99.7 8.4E-17 1.8E-21 133.3 9.4 86 69-170 6-97 (254)
108 PRK13548 hmuV hemin importer A 99.7 8E-17 1.7E-21 134.3 9.3 83 70-170 2-85 (258)
109 PRK14270 phosphate ABC transpo 99.7 8.9E-17 1.9E-21 133.0 9.4 86 69-170 3-94 (251)
110 PRK10575 iron-hydroxamate tran 99.7 7.1E-17 1.5E-21 134.9 8.9 84 69-170 10-94 (265)
111 PRK14267 phosphate ABC transpo 99.7 8.5E-17 1.8E-21 133.1 9.2 85 70-170 4-94 (253)
112 PRK14259 phosphate ABC transpo 99.7 9.1E-17 2E-21 134.8 9.5 87 68-170 11-103 (269)
113 cd03215 ABC_Carb_Monos_II This 99.7 1.3E-16 2.7E-21 126.5 9.8 81 69-170 3-84 (182)
114 PRK14237 phosphate transporter 99.7 1E-16 2.2E-21 134.2 9.7 86 69-170 19-110 (267)
115 PRK13631 cbiO cobalt transport 99.7 1E-16 2.3E-21 138.2 10.0 102 67-171 18-126 (320)
116 PRK14248 phosphate ABC transpo 99.7 1E-16 2.3E-21 134.0 9.7 88 67-170 18-111 (268)
117 PRK14274 phosphate ABC transpo 99.7 1E-16 2.3E-21 133.3 9.6 88 67-170 9-102 (259)
118 PRK10744 pstB phosphate transp 99.7 9.6E-17 2.1E-21 133.7 9.4 85 70-170 13-103 (260)
119 PRK14269 phosphate ABC transpo 99.7 8.4E-17 1.8E-21 132.9 9.0 82 71-170 3-88 (246)
120 PRK13648 cbiO cobalt transport 99.7 8.2E-17 1.8E-21 134.8 9.0 86 70-171 7-93 (269)
121 PRK14262 phosphate ABC transpo 99.7 1.1E-16 2.3E-21 132.3 9.5 86 69-170 2-93 (250)
122 TIGR03258 PhnT 2-aminoethylpho 99.7 4.8E-17 1E-21 142.6 7.8 81 71-171 6-89 (362)
123 PRK14240 phosphate transporter 99.7 1E-16 2.2E-21 132.4 9.3 85 70-170 3-93 (250)
124 cd03295 ABC_OpuCA_Osmoprotecti 99.7 8E-17 1.7E-21 132.6 8.5 73 86-170 10-84 (242)
125 cd03228 ABCC_MRP_Like The MRP 99.7 9E-17 1.9E-21 126.1 8.4 69 90-170 16-85 (171)
126 PRK13639 cbiO cobalt transport 99.7 9.5E-17 2.1E-21 135.1 9.1 85 71-170 2-87 (275)
127 cd03296 ABC_CysA_sulfate_impor 99.7 5.8E-17 1.2E-21 133.2 7.6 80 71-170 3-83 (239)
128 PRK15112 antimicrobial peptide 99.7 1.1E-16 2.4E-21 134.0 9.4 89 70-170 4-96 (267)
129 PRK14238 phosphate transporter 99.7 1.3E-16 2.9E-21 133.9 9.8 88 67-170 21-114 (271)
130 COG1123 ATPase components of v 99.7 9.7E-17 2.1E-21 146.1 9.6 93 70-173 5-103 (539)
131 cd03269 ABC_putative_ATPase Th 99.7 8.8E-17 1.9E-21 129.5 8.3 76 73-170 3-79 (210)
132 PRK11124 artP arginine transpo 99.7 1.4E-16 3E-21 131.0 9.5 88 71-170 3-91 (242)
133 PRK14235 phosphate transporter 99.7 1.4E-16 3E-21 133.4 9.7 86 69-170 18-109 (267)
134 PRK10253 iron-enterobactin tra 99.7 9.5E-17 2.1E-21 134.2 8.6 83 70-170 7-90 (265)
135 cd03369 ABCC_NFT1 Domain 2 of 99.7 1.3E-16 2.8E-21 128.4 9.1 86 69-170 5-91 (207)
136 PRK10619 histidine/lysine/argi 99.7 1.4E-16 3.1E-21 132.3 9.5 92 71-170 6-101 (257)
137 PRK11300 livG leucine/isoleuci 99.7 1.6E-16 3.4E-21 131.5 9.8 84 70-170 5-89 (255)
138 PRK11701 phnK phosphonate C-P 99.7 1.8E-16 3.9E-21 131.8 10.1 87 70-171 6-99 (258)
139 cd03294 ABC_Pro_Gly_Bertaine T 99.7 9.1E-17 2E-21 134.8 8.3 79 83-170 31-111 (269)
140 COG0411 LivG ABC-type branched 99.7 3E-17 6.4E-22 136.4 5.2 85 69-170 3-88 (250)
141 TIGR02982 heterocyst_DevA ABC 99.7 1.5E-16 3.4E-21 129.2 9.4 89 71-170 2-91 (220)
142 COG1129 MglA ABC-type sugar tr 99.7 1.3E-16 2.8E-21 144.3 9.8 87 68-171 6-93 (500)
143 PRK14268 phosphate ABC transpo 99.7 1.5E-16 3.3E-21 132.3 9.5 87 68-170 10-102 (258)
144 cd03246 ABCC_Protease_Secretio 99.7 1.4E-16 3.1E-21 125.2 8.8 70 89-170 15-85 (173)
145 COG4167 SapF ABC-type antimicr 99.7 4E-17 8.7E-22 132.0 5.7 94 69-174 3-100 (267)
146 PRK13538 cytochrome c biogenes 99.7 1.4E-16 3E-21 128.2 8.9 81 71-170 2-83 (204)
147 PRK13641 cbiO cobalt transport 99.7 1.7E-16 3.7E-21 134.4 9.8 92 70-170 2-94 (287)
148 cd03264 ABC_drug_resistance_li 99.7 9.3E-17 2E-21 129.4 7.8 71 86-170 10-81 (211)
149 cd03301 ABC_MalK_N The N-termi 99.7 6.7E-17 1.4E-21 130.2 7.0 78 73-170 3-81 (213)
150 PRK14255 phosphate ABC transpo 99.7 1.8E-16 3.9E-21 131.1 9.5 87 68-170 3-95 (252)
151 PRK14253 phosphate ABC transpo 99.7 1.7E-16 3.8E-21 130.9 9.4 85 69-170 2-92 (249)
152 cd03251 ABCC_MsbA MsbA is an e 99.7 1.2E-16 2.6E-21 130.4 8.3 69 90-170 16-85 (234)
153 cd03229 ABC_Class3 This class 99.7 1.6E-16 3.5E-21 125.4 8.7 75 86-170 10-85 (178)
154 TIGR03864 PQQ_ABC_ATP ABC tran 99.7 1.4E-16 3.1E-21 130.7 8.5 81 71-170 2-83 (236)
155 cd03235 ABC_Metallic_Cations A 99.7 1E-16 2.2E-21 129.4 7.5 68 86-170 9-77 (213)
156 COG4619 ABC-type uncharacteriz 99.7 3E-17 6.5E-22 130.9 4.2 76 86-174 13-89 (223)
157 TIGR03873 F420-0_ABC_ATP propo 99.7 1.6E-16 3.4E-21 132.0 8.7 81 72-170 3-84 (256)
158 TIGR01978 sufC FeS assembly AT 99.7 1.5E-16 3.3E-21 130.4 8.5 82 72-170 2-86 (243)
159 TIGR01188 drrA daunorubicin re 99.7 1.1E-16 2.3E-21 136.5 7.9 72 86-170 3-75 (302)
160 cd03247 ABCC_cytochrome_bd The 99.7 1.9E-16 4E-21 125.0 8.7 68 90-170 16-84 (178)
161 PRK14256 phosphate ABC transpo 99.7 1.6E-16 3.6E-21 131.4 8.7 84 71-170 5-94 (252)
162 PRK13640 cbiO cobalt transport 99.7 1.9E-16 4E-21 133.8 9.1 86 70-171 5-94 (282)
163 cd03289 ABCC_CFTR2 The CFTR su 99.7 1.7E-16 3.6E-21 134.4 8.8 84 71-170 3-86 (275)
164 PRK11231 fecE iron-dicitrate t 99.7 1.8E-16 4E-21 131.5 8.8 83 70-170 2-85 (255)
165 TIGR02323 CP_lyasePhnK phospho 99.7 2.5E-16 5.5E-21 130.2 9.5 86 70-170 3-95 (253)
166 TIGR01189 ccmA heme ABC export 99.7 2E-16 4.3E-21 126.6 8.6 72 86-170 10-82 (198)
167 PRK13649 cbiO cobalt transport 99.7 2.2E-16 4.9E-21 132.8 9.2 91 71-170 3-94 (280)
168 cd03254 ABCC_Glucan_exporter_l 99.7 1.8E-16 4E-21 129.0 8.4 82 71-170 3-86 (229)
169 PRK14265 phosphate ABC transpo 99.7 3.1E-16 6.6E-21 132.0 9.9 90 65-170 15-110 (274)
170 PRK14241 phosphate transporter 99.7 2.4E-16 5.1E-21 131.1 9.2 85 70-170 4-94 (258)
171 cd03293 ABC_NrtD_SsuB_transpor 99.7 1.9E-16 4.1E-21 128.5 8.4 65 89-170 17-82 (220)
172 cd03231 ABC_CcmA_heme_exporter 99.7 2E-16 4.2E-21 127.2 8.3 80 72-170 2-82 (201)
173 PRK13642 cbiO cobalt transport 99.7 2.4E-16 5.2E-21 132.8 9.2 87 70-171 4-91 (277)
174 TIGR02868 CydC thiol reductant 99.7 1.8E-16 3.9E-21 143.7 9.1 84 71-174 335-420 (529)
175 PRK13651 cobalt transporter AT 99.7 2.4E-16 5.3E-21 135.0 9.4 97 71-170 3-114 (305)
176 PRK14254 phosphate ABC transpo 99.7 2.6E-16 5.7E-21 133.3 9.4 88 67-170 36-129 (285)
177 PRK13547 hmuV hemin importer A 99.7 2E-16 4.3E-21 133.4 8.4 82 71-170 2-92 (272)
178 PRK14249 phosphate ABC transpo 99.7 3E-16 6.6E-21 129.8 9.3 85 70-170 4-94 (251)
179 cd03252 ABCC_Hemolysin The ABC 99.7 2.2E-16 4.8E-21 129.3 8.4 70 89-170 15-85 (237)
180 cd03245 ABCC_bacteriocin_expor 99.7 2.6E-16 5.6E-21 127.4 8.6 82 71-170 3-87 (220)
181 cd03244 ABCC_MRP_domain2 Domai 99.7 2.9E-16 6.2E-21 127.2 8.8 85 71-171 3-88 (221)
182 PRK14251 phosphate ABC transpo 99.7 3.6E-16 7.8E-21 129.2 9.5 85 70-170 4-94 (251)
183 PRK14271 phosphate ABC transpo 99.7 3.7E-16 8E-21 131.8 9.8 85 69-170 20-110 (276)
184 PRK10762 D-ribose transporter 99.7 3.1E-16 6.7E-21 141.8 9.9 84 70-170 4-88 (501)
185 PRK09700 D-allose transporter 99.7 3.2E-16 6.9E-21 141.9 9.8 85 69-170 4-89 (510)
186 PRK14266 phosphate ABC transpo 99.7 3.9E-16 8.4E-21 128.9 9.5 85 70-170 3-93 (250)
187 PRK10261 glutathione transport 99.7 3.7E-16 8.1E-21 145.1 10.4 94 68-170 311-410 (623)
188 PRK11247 ssuB aliphatic sulfon 99.7 2.6E-16 5.7E-21 131.7 8.5 79 69-170 11-90 (257)
189 PRK14245 phosphate ABC transpo 99.7 4.1E-16 8.9E-21 128.9 9.4 86 69-170 2-93 (250)
190 PRK09984 phosphonate/organopho 99.7 4.6E-16 9.9E-21 129.6 9.7 88 70-170 4-95 (262)
191 PRK11248 tauB taurine transpor 99.7 3.1E-16 6.7E-21 130.7 8.6 77 71-170 2-79 (255)
192 PRK14272 phosphate ABC transpo 99.7 4.1E-16 8.9E-21 128.8 9.2 85 70-170 4-94 (252)
193 PRK14239 phosphate transporter 99.7 4.6E-16 1E-20 128.5 9.5 85 70-170 5-95 (252)
194 cd03253 ABCC_ATM1_transporter 99.7 3.1E-16 6.6E-21 128.2 8.3 71 88-170 13-84 (236)
195 cd03288 ABCC_SUR2 The SUR doma 99.7 4.2E-16 9.2E-21 129.7 9.2 83 70-170 19-104 (257)
196 PRK14243 phosphate transporter 99.7 4.5E-16 9.8E-21 130.1 9.4 86 69-170 9-100 (264)
197 cd03248 ABCC_TAP TAP, the Tran 99.7 2.9E-16 6.3E-21 127.8 8.0 86 70-170 11-97 (226)
198 PRK14260 phosphate ABC transpo 99.7 4.2E-16 9.1E-21 129.7 9.1 86 69-170 6-97 (259)
199 TIGR02324 CP_lyasePhnL phospho 99.7 4.1E-16 8.8E-21 126.7 8.7 91 71-170 2-99 (224)
200 cd03217 ABC_FeS_Assembly ABC-t 99.7 4.2E-16 9E-21 125.3 8.6 81 73-170 3-86 (200)
201 cd03214 ABC_Iron-Siderophores_ 99.7 1.6E-16 3.4E-21 125.8 6.0 71 86-168 9-80 (180)
202 PRK13645 cbiO cobalt transport 99.6 5.1E-16 1.1E-20 131.4 9.4 92 71-170 7-99 (289)
203 PRK14275 phosphate ABC transpo 99.6 5.2E-16 1.1E-20 131.5 9.3 88 67-170 36-129 (286)
204 PRK13539 cytochrome c biogenes 99.6 5.4E-16 1.2E-20 125.2 9.0 80 70-170 2-82 (207)
205 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.6 4.1E-16 8.9E-21 127.8 8.4 70 89-170 16-86 (238)
206 PRK14236 phosphate transporter 99.6 6.3E-16 1.4E-20 129.8 9.6 86 69-170 24-115 (272)
207 PRK11288 araG L-arabinose tran 99.6 5.5E-16 1.2E-20 140.1 9.9 84 70-170 4-88 (501)
208 PRK13543 cytochrome c biogenes 99.6 5.9E-16 1.3E-20 125.5 9.0 83 67-170 8-91 (214)
209 COG0396 sufC Cysteine desulfur 99.6 5.1E-16 1.1E-20 128.4 8.6 87 69-172 2-92 (251)
210 PRK14261 phosphate ABC transpo 99.6 6.2E-16 1.3E-20 128.1 9.2 86 69-170 5-96 (253)
211 PRK15439 autoinducer 2 ABC tra 99.6 6.3E-16 1.4E-20 140.2 10.0 84 70-170 11-95 (510)
212 PRK10938 putative molybdenum t 99.6 3.6E-16 7.9E-21 140.7 8.2 84 69-170 2-86 (490)
213 PRK13549 xylose transporter AT 99.6 6.4E-16 1.4E-20 139.9 9.9 85 69-170 4-91 (506)
214 PRK14264 phosphate ABC transpo 99.6 8.2E-16 1.8E-20 131.4 9.7 88 67-170 42-135 (305)
215 PRK09580 sufC cysteine desulfu 99.6 5.7E-16 1.2E-20 127.5 8.4 82 71-170 2-87 (248)
216 PRK11174 cysteine/glutathione 99.6 5.7E-16 1.2E-20 142.1 9.1 86 71-174 350-435 (588)
217 cd03267 ABC_NatA_like Similar 99.6 5.1E-16 1.1E-20 127.7 7.8 70 86-168 31-101 (236)
218 PRK14263 phosphate ABC transpo 99.6 9.5E-16 2.1E-20 128.2 9.5 86 69-170 7-98 (261)
219 TIGR03797 NHPM_micro_ABC2 NHPM 99.6 5.9E-16 1.3E-20 144.6 9.1 87 71-174 452-539 (686)
220 PRK15134 microcin C ABC transp 99.6 6.4E-16 1.4E-20 140.6 9.1 95 67-170 272-371 (529)
221 COG1137 YhbG ABC-type (unclass 99.6 5E-17 1.1E-21 132.4 1.5 88 68-174 2-91 (243)
222 PRK15134 microcin C ABC transp 99.6 1E-15 2.2E-20 139.2 10.3 91 69-170 4-101 (529)
223 COG4555 NatA ABC-type Na+ tran 99.6 2.4E-16 5.3E-21 128.5 5.5 79 70-167 1-81 (245)
224 cd03233 ABC_PDR_domain1 The pl 99.6 1.2E-15 2.5E-20 123.0 9.4 85 71-170 4-92 (202)
225 PRK10418 nikD nickel transport 99.6 7.3E-16 1.6E-20 128.0 8.4 80 70-170 4-88 (254)
226 PRK14244 phosphate ABC transpo 99.6 7.7E-16 1.7E-20 127.3 8.3 75 86-170 15-95 (251)
227 PRK15056 manganese/iron transp 99.6 1E-15 2.2E-20 128.6 9.0 81 70-170 6-87 (272)
228 cd03232 ABC_PDR_domain2 The pl 99.6 1.5E-15 3.3E-20 121.3 9.5 83 70-170 3-88 (192)
229 COG2274 SunT ABC-type bacterio 99.6 5.8E-16 1.3E-20 145.7 8.1 81 81-174 476-559 (709)
230 COG1132 MdlB ABC-type multidru 99.6 7.4E-16 1.6E-20 141.0 8.2 85 71-174 329-415 (567)
231 cd03298 ABC_ThiQ_thiamine_tran 99.6 7.7E-16 1.7E-20 124.0 7.3 63 94-170 16-79 (211)
232 PF00005 ABC_tran: ABC transpo 99.6 1E-15 2.2E-20 114.8 7.3 67 92-170 1-68 (137)
233 TIGR03796 NHPM_micro_ABC1 NHPM 99.6 8.2E-16 1.8E-20 144.0 8.4 87 71-174 478-565 (710)
234 cd03290 ABCC_SUR1_N The SUR do 99.6 9.9E-16 2.1E-20 124.1 7.7 76 86-170 10-88 (218)
235 TIGR01193 bacteriocin_ABC ABC- 99.6 9.2E-16 2E-20 143.8 8.4 85 71-174 474-560 (708)
236 PRK14258 phosphate ABC transpo 99.6 1.7E-15 3.8E-20 126.3 9.2 85 70-170 7-97 (261)
237 TIGR00968 3a0106s01 sulfate AB 99.6 9E-16 2E-20 126.2 7.3 71 86-170 10-81 (237)
238 COG4107 PhnK ABC-type phosphon 99.6 7.8E-16 1.7E-20 123.7 6.5 95 69-173 5-101 (258)
239 KOG0058 Peptide exporter, ABC 99.6 9.3E-16 2E-20 142.5 8.0 89 70-174 465-554 (716)
240 PRK14252 phosphate ABC transpo 99.6 2.2E-15 4.7E-20 125.8 9.4 88 69-170 15-108 (265)
241 TIGR02633 xylG D-xylose ABC tr 99.6 1.6E-15 3.5E-20 136.8 9.2 83 71-170 2-87 (500)
242 PRK14257 phosphate ABC transpo 99.6 2.3E-15 5E-20 130.3 9.7 89 68-170 78-172 (329)
243 TIGR02857 CydD thiol reductant 99.6 1.5E-15 3.3E-20 137.6 8.7 85 71-174 321-408 (529)
244 PRK14246 phosphate ABC transpo 99.6 1.8E-15 4E-20 126.2 8.5 91 69-171 9-100 (257)
245 PRK10982 galactose/methyl gala 99.6 1.4E-15 3.1E-20 137.0 8.3 74 86-170 8-82 (491)
246 CHL00131 ycf16 sulfate ABC tra 99.6 2.3E-15 4.9E-20 124.4 8.9 83 70-170 7-93 (252)
247 cd03297 ABC_ModC_molybdenum_tr 99.6 2.1E-15 4.5E-20 121.9 8.4 79 81-170 5-84 (214)
248 TIGR01277 thiQ thiamine ABC tr 99.6 1.5E-15 3.2E-20 122.9 7.4 66 91-170 13-79 (213)
249 PRK10790 putative multidrug tr 99.6 1.9E-15 4.1E-20 138.8 8.9 86 71-174 341-427 (592)
250 cd03300 ABC_PotA_N PotA is an 99.6 1.5E-15 3.3E-20 124.4 7.2 71 86-170 10-81 (232)
251 PRK11176 lipid transporter ATP 99.6 1.8E-15 4E-20 138.4 8.5 85 71-174 342-429 (582)
252 PRK09700 D-allose transporter 99.6 2.7E-15 5.8E-20 135.8 9.4 83 69-170 264-347 (510)
253 TIGR03740 galliderm_ABC gallid 99.6 2.5E-15 5.5E-20 122.1 8.2 76 73-170 3-79 (223)
254 PRK11160 cysteine/glutathione 99.6 2.2E-15 4.7E-20 138.5 8.8 87 71-174 339-426 (574)
255 cd03213 ABCG_EPDR ABCG transpo 99.6 3.4E-15 7.3E-20 119.6 8.8 85 71-170 4-91 (194)
256 PRK10261 glutathione transport 99.6 4.3E-15 9.4E-20 138.0 10.6 98 68-170 10-113 (623)
257 cd03299 ABC_ModC_like Archeal 99.6 2E-15 4.2E-20 124.1 7.3 70 86-170 10-80 (235)
258 TIGR00958 3a01208 Conjugate Tr 99.6 2.1E-15 4.5E-20 141.8 8.4 88 71-174 479-567 (711)
259 COG4608 AppF ABC-type oligopep 99.6 2.3E-15 5E-20 126.8 7.6 75 68-144 2-80 (268)
260 PRK11144 modC molybdate transp 99.6 2.6E-15 5.7E-20 130.9 8.2 75 86-170 10-85 (352)
261 TIGR02142 modC_ABC molybdenum 99.6 2.1E-15 4.4E-20 131.6 7.5 75 85-170 8-84 (354)
262 PRK10771 thiQ thiamine transpo 99.6 2.3E-15 5.1E-20 123.1 7.3 78 71-170 2-80 (232)
263 cd03250 ABCC_MRP_domain1 Domai 99.6 3.2E-15 6.9E-20 120.0 7.7 47 90-138 19-66 (204)
264 PRK10522 multidrug transporter 99.6 3.8E-15 8.3E-20 136.0 9.2 83 71-170 323-406 (547)
265 TIGR02633 xylG D-xylose ABC tr 99.6 3.3E-15 7.2E-20 134.8 8.7 88 69-170 256-345 (500)
266 PRK09544 znuC high-affinity zi 99.6 4.8E-15 1E-19 123.5 8.7 61 70-138 4-65 (251)
267 cd03234 ABCG_White The White s 99.6 5.5E-15 1.2E-19 120.5 8.8 67 89-170 20-90 (226)
268 COG4172 ABC-type uncharacteriz 99.6 6.7E-15 1.4E-19 130.2 9.8 96 67-171 273-373 (534)
269 PRK13541 cytochrome c biogenes 99.6 4.9E-15 1.1E-19 118.4 8.2 77 71-170 2-79 (195)
270 TIGR03375 type_I_sec_LssB type 99.6 3.8E-15 8.2E-20 139.4 8.6 87 71-174 464-551 (694)
271 PRK13657 cyclic beta-1,2-gluca 99.6 4.3E-15 9.2E-20 136.5 8.8 85 71-174 335-421 (588)
272 PRK13549 xylose transporter AT 99.6 5E-15 1.1E-19 134.0 9.0 88 69-170 258-347 (506)
273 PRK10938 putative molybdenum t 99.6 4.1E-15 8.8E-20 134.0 8.2 86 68-170 258-345 (490)
274 PRK03695 vitamin B12-transport 99.6 4.4E-15 9.6E-20 123.1 7.5 68 91-170 11-78 (248)
275 TIGR03269 met_CoM_red_A2 methy 99.6 8.9E-15 1.9E-19 132.7 9.6 96 68-170 277-374 (520)
276 TIGR02770 nickel_nikD nickel i 99.6 5.2E-15 1.1E-19 121.0 7.3 66 91-170 1-71 (230)
277 COG4559 ABC-type hemin transpo 99.6 3.8E-15 8.3E-20 122.4 6.4 74 86-171 11-85 (259)
278 TIGR02204 MsbA_rel ABC transpo 99.6 6.6E-15 1.4E-19 134.5 8.5 88 71-174 338-426 (576)
279 TIGR02203 MsbA_lipidA lipid A 99.6 6.5E-15 1.4E-19 134.3 8.3 87 71-174 331-418 (571)
280 KOG0057 Mitochondrial Fe/S clu 99.6 6.3E-15 1.4E-19 133.7 8.0 82 71-170 352-434 (591)
281 TIGR01194 cyc_pep_trnsptr cycl 99.6 7.7E-15 1.7E-19 134.4 8.6 89 71-174 338-428 (555)
282 COG4778 PhnL ABC-type phosphon 99.6 4.6E-15 9.9E-20 118.8 6.1 96 70-170 4-102 (235)
283 cd03223 ABCD_peroxisomal_ALDP 99.6 9.5E-15 2.1E-19 114.5 7.9 59 89-170 14-73 (166)
284 TIGR03269 met_CoM_red_A2 methy 99.6 1E-14 2.2E-19 132.4 8.9 58 72-137 2-62 (520)
285 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.6 9.9E-15 2.1E-19 112.1 7.5 52 86-139 10-62 (144)
286 TIGR01842 type_I_sec_PrtD type 99.6 1E-14 2.2E-19 133.1 8.8 87 71-174 317-404 (544)
287 TIGR01846 type_I_sec_HlyB type 99.6 9.5E-15 2.1E-19 136.8 8.5 87 71-174 456-543 (694)
288 COG4152 ABC-type uncharacteriz 99.6 4.2E-15 9.1E-20 124.3 5.4 66 71-144 3-69 (300)
289 COG4161 ArtP ABC-type arginine 99.6 8.2E-15 1.8E-19 116.7 6.6 82 83-170 9-91 (242)
290 COG4172 ABC-type uncharacteriz 99.5 1.2E-14 2.5E-19 128.7 8.2 94 68-172 4-104 (534)
291 cd00267 ABC_ATPase ABC (ATP-bi 99.5 1.5E-14 3.3E-19 111.6 7.9 71 86-168 9-80 (157)
292 COG1119 ModF ABC-type molybden 99.5 8.5E-15 1.9E-19 122.0 6.9 86 67-169 28-114 (257)
293 PRK10535 macrolide transporter 99.5 2.9E-14 6.3E-19 133.1 10.7 93 70-174 4-98 (648)
294 PRK10789 putative multidrug tr 99.5 1.5E-14 3.2E-19 132.8 8.6 74 88-174 327-401 (569)
295 COG4136 ABC-type uncharacteriz 99.5 1.3E-14 2.9E-19 114.2 6.9 74 86-174 12-89 (213)
296 TIGR01192 chvA glucan exporter 99.5 1.8E-14 3.9E-19 132.8 8.7 82 71-170 335-418 (585)
297 COG3840 ThiQ ABC-type thiamine 99.5 1.4E-14 3E-19 116.9 6.5 75 83-174 8-83 (231)
298 PLN03130 ABC transporter C fam 99.5 1.9E-14 4.1E-19 145.5 9.1 88 70-174 1237-1325(1622)
299 PTZ00243 ABC transporter; Prov 99.5 2.2E-14 4.9E-19 144.6 9.2 87 71-174 1309-1396(1560)
300 PLN03232 ABC transporter C fam 99.5 1.9E-14 4.2E-19 144.6 8.6 88 70-174 1234-1322(1495)
301 PRK11819 putative ABC transpor 99.5 2.8E-14 6.1E-19 130.8 8.5 61 69-137 5-67 (556)
302 COG4525 TauB ABC-type taurine 99.5 2.6E-14 5.7E-19 116.5 7.3 80 70-172 3-85 (259)
303 COG4604 CeuD ABC-type enteroch 99.5 8.1E-15 1.8E-19 119.5 4.2 66 71-144 2-68 (252)
304 PRK10982 galactose/methyl gala 99.5 3.4E-14 7.4E-19 128.1 8.7 83 69-170 249-332 (491)
305 TIGR00957 MRP_assoc_pro multi 99.5 3.7E-14 8E-19 142.8 8.9 88 70-174 1284-1372(1522)
306 PTZ00265 multidrug resistance 99.5 3.3E-14 7.1E-19 142.7 8.4 88 71-174 1166-1308(1466)
307 KOG0055 Multidrug/pheromone ex 99.5 2.8E-14 6.1E-19 139.0 7.4 88 71-174 351-439 (1228)
308 PTZ00265 multidrug resistance 99.5 3E-14 6.5E-19 142.9 7.9 88 71-174 383-472 (1466)
309 PRK11288 araG L-arabinose tran 99.5 4.8E-14 1E-18 127.5 8.5 70 90-170 267-337 (501)
310 PRK10762 D-ribose transporter 99.5 3.7E-14 8E-19 128.3 7.7 70 90-170 266-336 (501)
311 PRK15064 ABC transporter ATP-b 99.5 5.2E-14 1.1E-18 128.1 8.5 62 69-138 318-380 (530)
312 PRK15064 ABC transporter ATP-b 99.5 4.5E-14 9.7E-19 128.5 8.0 60 71-138 2-62 (530)
313 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.5 4.1E-14 8.8E-19 115.7 6.3 56 85-142 31-87 (224)
314 TIGR01257 rim_protein retinal- 99.5 8.9E-14 1.9E-18 142.5 9.7 86 68-170 1935-2021(2272)
315 TIGR03719 ABC_ABC_ChvD ATP-bin 99.5 9.1E-14 2E-18 127.3 8.7 61 69-137 3-65 (552)
316 COG4618 ArpD ABC-type protease 99.5 3.7E-14 8.1E-19 128.0 5.9 74 88-174 348-422 (580)
317 COG4988 CydD ABC-type transpor 99.5 6.7E-14 1.5E-18 127.7 7.4 76 86-174 330-407 (559)
318 TIGR01257 rim_protein retinal- 99.5 1.3E-13 2.7E-18 141.4 10.1 86 68-170 926-1012(2272)
319 TIGR01184 ntrCD nitrate transp 99.5 7.8E-14 1.7E-18 114.3 6.9 50 92-143 1-51 (230)
320 TIGR01271 CFTR_protein cystic 99.5 1.3E-13 2.7E-18 138.7 9.5 88 70-174 1217-1304(1490)
321 PRK11147 ABC transporter ATPas 99.5 1.2E-13 2.5E-18 128.6 8.4 62 67-136 316-378 (635)
322 PRK15439 autoinducer 2 ABC tra 99.5 9.8E-14 2.1E-18 126.0 7.4 69 91-170 278-347 (510)
323 KOG0056 Heavy metal exporter H 99.5 9.4E-14 2E-18 125.5 6.9 83 71-170 538-621 (790)
324 KOG0055 Multidrug/pheromone ex 99.5 1.1E-13 2.4E-18 134.9 7.8 88 71-174 988-1076(1228)
325 TIGR03719 ABC_ABC_ChvD ATP-bin 99.5 1.9E-13 4.1E-18 125.2 8.5 62 68-137 320-382 (552)
326 PRK11819 putative ABC transpor 99.5 2.1E-13 4.5E-18 125.1 8.7 61 69-137 323-384 (556)
327 COG4586 ABC-type uncharacteriz 99.4 5.7E-14 1.2E-18 119.0 4.5 69 86-167 34-103 (325)
328 PLN03211 ABC transporter G-25; 99.4 1.8E-13 3.9E-18 128.2 8.0 71 84-170 76-149 (659)
329 cd03236 ABC_RNaseL_inhibitor_d 99.4 1E-13 2.3E-18 116.0 5.7 46 86-132 10-57 (255)
330 COG1134 TagH ABC-type polysacc 99.4 2.5E-13 5.3E-18 113.2 7.7 54 86-141 37-91 (249)
331 PF01583 APS_kinase: Adenylyls 99.4 2E-14 4.4E-19 112.8 1.1 71 101-171 1-71 (156)
332 cd03291 ABCC_CFTR1 The CFTR su 99.4 3.7E-13 8E-18 114.4 8.7 62 67-138 36-98 (282)
333 cd03222 ABC_RNaseL_inhibitor T 99.4 2.6E-13 5.6E-18 108.3 6.0 56 84-142 8-64 (177)
334 PRK11147 ABC transporter ATPas 99.4 3.3E-13 7.2E-18 125.6 7.3 64 68-139 1-65 (635)
335 PRK10636 putative ABC transpor 99.4 5.3E-13 1.2E-17 124.5 8.7 63 67-137 309-372 (638)
336 COG4133 CcmA ABC-type transpor 99.4 3.1E-13 6.8E-18 109.1 5.5 56 86-143 12-68 (209)
337 COG1101 PhnK ABC-type uncharac 99.4 2E-13 4.3E-18 112.6 4.4 87 72-171 3-90 (263)
338 PRK10636 putative ABC transpor 99.4 3.6E-13 7.9E-18 125.6 6.7 61 71-139 2-63 (638)
339 TIGR00956 3a01205 Pleiotropic 99.4 9.3E-13 2E-17 131.9 9.7 85 68-170 757-845 (1394)
340 PRK13546 teichoic acids export 99.4 9.3E-13 2E-17 110.7 7.5 51 87-139 35-86 (264)
341 cd00820 PEPCK_HprK Phosphoenol 99.4 1E-12 2.2E-17 97.3 6.6 64 89-169 2-65 (107)
342 TIGR03771 anch_rpt_ABC anchore 99.4 5.7E-13 1.2E-17 108.7 5.8 57 97-170 1-58 (223)
343 PRK15177 Vi polysaccharide exp 99.4 6.8E-13 1.5E-17 107.9 5.8 50 90-141 1-52 (213)
344 PLN03073 ABC transporter F fam 99.4 1.6E-12 3.4E-17 123.0 8.7 62 68-137 506-569 (718)
345 TIGR00955 3a01204 The Eye Pigm 99.4 1.4E-12 2.9E-17 121.3 7.6 69 87-170 36-108 (617)
346 KOG0054 Multidrug resistance-a 99.4 2.2E-12 4.9E-17 127.7 9.3 92 66-174 1134-1226(1381)
347 COG4148 ModC ABC-type molybdat 99.4 7.6E-13 1.6E-17 112.7 5.2 72 94-174 16-88 (352)
348 COG4987 CydC ABC-type transpor 99.4 8.8E-13 1.9E-17 119.7 5.9 88 70-174 336-424 (573)
349 COG4615 PvdE ABC-type sideroph 99.4 5.6E-13 1.2E-17 118.0 4.5 72 90-174 337-409 (546)
350 TIGR03238 dnd_assoc_3 dnd syst 99.4 7.4E-13 1.6E-17 119.6 5.3 68 90-172 20-89 (504)
351 COG4674 Uncharacterized ABC-ty 99.3 9.1E-13 2E-17 107.4 4.8 84 70-170 5-90 (249)
352 PRK13545 tagH teichoic acids e 99.3 3.7E-12 8.1E-17 116.6 7.9 63 70-140 21-87 (549)
353 TIGR00954 3a01203 Peroxysomal 99.3 4.4E-12 9.6E-17 118.7 8.5 73 70-170 451-524 (659)
354 cd03238 ABC_UvrA The excision 99.3 4.3E-12 9.3E-17 101.2 6.0 47 88-139 7-53 (176)
355 COG0488 Uup ATPase components 99.3 8.4E-12 1.8E-16 114.4 7.9 59 68-132 1-60 (530)
356 cd03237 ABC_RNaseL_inhibitor_d 99.3 7.9E-12 1.7E-16 104.1 7.0 50 90-141 8-63 (246)
357 PRK13409 putative ATPase RIL; 99.3 1E-11 2.2E-16 115.2 8.3 62 67-137 337-399 (590)
358 TIGR00956 3a01205 Pleiotropic 99.3 1.1E-11 2.3E-16 124.3 7.9 70 88-170 73-147 (1394)
359 PLN03140 ABC transporter G fam 99.2 1.2E-11 2.6E-16 124.3 7.0 68 88-170 177-248 (1470)
360 PRK13409 putative ATPase RIL; 99.2 5.4E-12 1.2E-16 117.0 3.9 57 83-142 80-149 (590)
361 COG5265 ATM1 ABC-type transpor 99.2 1.2E-11 2.7E-16 109.9 5.4 72 87-170 274-346 (497)
362 PLN03140 ABC transporter G fam 99.2 2.7E-11 5.8E-16 121.9 8.0 69 87-170 891-962 (1470)
363 COG4170 SapD ABC-type antimicr 99.2 2.7E-11 5.9E-16 100.2 6.4 95 69-172 2-100 (330)
364 COG4138 BtuD ABC-type cobalami 99.2 1.9E-11 4.1E-16 98.6 4.9 68 90-169 13-80 (248)
365 PLN03073 ABC transporter F fam 99.2 5.1E-11 1.1E-15 112.8 7.2 59 69-133 176-238 (718)
366 KOG0061 Transporter, ABC super 99.2 8E-11 1.7E-15 109.7 8.3 69 87-170 41-113 (613)
367 TIGR00957 MRP_assoc_pro multi 99.1 9E-11 1.9E-15 118.6 8.4 63 70-138 636-699 (1522)
368 KOG4238 Bifunctional ATP sulfu 99.1 4.3E-12 9.3E-17 111.3 -1.0 74 99-172 47-120 (627)
369 cd03278 ABC_SMC_barmotin Barmo 99.1 6E-11 1.3E-15 95.7 4.1 65 93-173 14-88 (197)
370 COG0488 Uup ATPase components 99.1 2E-10 4.4E-15 105.4 8.0 61 66-132 317-379 (530)
371 TIGR01271 CFTR_protein cystic 99.1 1.9E-10 4.1E-15 116.1 7.4 48 89-138 439-487 (1490)
372 KOG0059 Lipid exporter ABCA1 a 99.1 1.7E-10 3.8E-15 111.3 6.4 85 69-170 563-649 (885)
373 PTZ00243 ABC transporter; Prov 99.1 2.2E-10 4.7E-15 116.1 7.3 47 86-132 670-717 (1560)
374 PLN03130 ABC transporter C fam 99.1 2.4E-10 5.2E-15 116.1 7.4 59 71-132 615-675 (1622)
375 PLN03232 ABC transporter C fam 99.1 2.6E-10 5.6E-15 115.1 7.0 59 71-132 615-674 (1495)
376 TIGR00455 apsK adenylylsulfate 99.0 9.3E-11 2E-15 92.7 1.3 80 89-168 5-84 (184)
377 PRK03846 adenylylsulfate kinas 99.0 1.7E-10 3.8E-15 92.6 1.5 76 83-158 5-80 (198)
378 PRK06002 fliI flagellum-specif 98.9 3.9E-09 8.5E-14 95.1 7.2 73 87-169 151-228 (450)
379 cd03270 ABC_UvrA_I The excisio 98.8 2E-09 4.4E-14 88.3 3.8 33 87-119 6-38 (226)
380 PRK00889 adenylylsulfate kinas 98.8 1.5E-09 3.2E-14 85.1 2.3 65 100-164 2-66 (175)
381 cd03272 ABC_SMC3_euk Eukaryoti 98.7 5.7E-09 1.2E-13 85.6 2.8 35 86-125 12-46 (243)
382 TIGR02858 spore_III_AA stage I 98.7 3.2E-08 6.9E-13 84.0 5.4 57 103-170 112-169 (270)
383 KOG0065 Pleiotropic drug resis 98.7 2.5E-08 5.5E-13 98.4 5.1 71 87-172 802-875 (1391)
384 KOG0060 Long-chain acyl-CoA tr 98.6 9.8E-08 2.1E-12 87.9 7.7 65 70-138 433-498 (659)
385 PRK09825 idnK D-gluconate kina 98.6 4.7E-08 1E-12 77.7 5.0 37 101-142 2-38 (176)
386 TIGR02322 phosphon_PhnN phosph 98.6 1.4E-07 3E-12 73.9 6.9 31 102-132 1-31 (179)
387 PRK10078 ribose 1,5-bisphospho 98.6 7.2E-08 1.6E-12 76.6 4.8 38 102-143 2-39 (186)
388 COG1129 MglA ABC-type sugar tr 98.6 2.3E-07 5.1E-12 84.6 8.7 68 91-169 274-342 (500)
389 TIGR01187 potA spermidine/putr 98.6 3.8E-08 8.3E-13 85.0 3.5 35 107-143 1-36 (325)
390 PRK05537 bifunctional sulfate 98.6 3.9E-08 8.5E-13 91.1 3.8 69 99-167 389-458 (568)
391 COG4178 ABC-type uncharacteriz 98.6 8.8E-08 1.9E-12 88.9 6.0 58 70-132 392-450 (604)
392 cd03273 ABC_SMC2_euk Eukaryoti 98.5 3.4E-08 7.4E-13 81.9 2.4 59 102-170 25-86 (251)
393 KOG0054 Multidrug resistance-a 98.5 2.5E-07 5.5E-12 92.5 8.7 64 69-138 517-582 (1381)
394 cd01130 VirB11-like_ATPase Typ 98.5 7.8E-08 1.7E-12 76.5 3.5 44 93-138 16-60 (186)
395 cd03279 ABC_sbcCD SbcCD and ot 98.5 6.6E-08 1.4E-12 78.4 2.0 34 93-126 18-52 (213)
396 COG3845 ABC-type uncharacteriz 98.5 6.2E-07 1.4E-11 81.2 8.3 70 65-141 252-322 (501)
397 PRK08149 ATP synthase SpaL; Va 98.4 2.4E-07 5.1E-12 83.3 5.1 74 87-170 137-215 (428)
398 cd02027 APSK Adenosine 5'-phos 98.4 1.4E-07 3.1E-12 72.7 2.7 55 104-158 1-55 (149)
399 TIGR00235 udk uridine kinase. 98.4 2.9E-07 6.3E-12 74.3 4.0 28 100-127 4-31 (207)
400 cd03283 ABC_MutS-like MutS-lik 98.4 3.2E-07 7E-12 74.2 4.1 35 90-126 15-49 (199)
401 COG2401 ABC-type ATPase fused 98.4 1.1E-07 2.4E-12 85.2 1.4 51 76-126 383-433 (593)
402 cd03240 ABC_Rad50 The catalyti 98.4 2.8E-07 6.1E-12 74.6 3.6 36 96-132 17-57 (204)
403 PRK07721 fliI flagellum-specif 98.4 4.9E-07 1.1E-11 81.5 5.3 73 88-168 145-221 (438)
404 PRK06315 type III secretion sy 98.4 3.9E-07 8.3E-12 82.2 4.5 54 88-142 151-207 (442)
405 PRK07196 fliI flagellum-specif 98.4 4.2E-07 9E-12 81.9 4.6 42 87-129 141-183 (434)
406 cd03274 ABC_SMC4_euk Eukaryoti 98.4 3.3E-07 7.2E-12 74.8 3.6 34 86-124 14-47 (212)
407 PRK07960 fliI flagellum-specif 98.3 2.5E-07 5.5E-12 83.5 3.1 75 89-173 163-241 (455)
408 PRK00300 gmk guanylate kinase; 98.3 7E-07 1.5E-11 71.3 5.0 28 100-127 3-30 (205)
409 PRK05541 adenylylsulfate kinas 98.3 3.1E-07 6.8E-12 71.9 2.8 46 99-144 4-49 (176)
410 KOG2355 Predicted ABC-type tra 98.3 1.8E-06 3.9E-11 71.6 6.3 66 69-141 12-78 (291)
411 cd03282 ABC_MSH4_euk MutS4 hom 98.3 9E-07 1.9E-11 72.0 4.4 38 88-125 15-52 (204)
412 cd03280 ABC_MutS2 MutS2 homolo 98.3 1E-06 2.2E-11 70.8 4.7 32 92-123 17-49 (200)
413 cd03271 ABC_UvrA_II The excisi 98.3 6.7E-07 1.4E-11 75.6 3.6 33 90-122 9-41 (261)
414 KOG0927 Predicted transporter 98.3 7.1E-07 1.5E-11 81.8 3.9 52 81-132 394-447 (614)
415 PRK05506 bifunctional sulfate 98.3 4.2E-07 9.2E-12 85.0 2.5 86 78-163 436-521 (632)
416 cd03243 ABC_MutS_homologs The 98.3 8.2E-07 1.8E-11 71.4 3.7 33 93-125 20-52 (202)
417 PLN02796 D-glycerate 3-kinase 98.2 6.2E-07 1.3E-11 78.6 3.1 51 90-142 80-142 (347)
418 PF13555 AAA_29: P-loop contai 98.2 1.8E-06 3.8E-11 58.0 4.1 32 95-126 15-47 (62)
419 PRK09862 putative ATP-dependen 98.2 1.5E-06 3.1E-11 79.8 4.3 59 81-141 189-248 (506)
420 KOG0927 Predicted transporter 98.2 2.2E-06 4.8E-11 78.6 5.4 52 81-132 80-132 (614)
421 TIGR02546 III_secr_ATP type II 98.2 1.3E-06 2.9E-11 78.4 3.9 45 87-132 131-176 (422)
422 PRK09270 nucleoside triphospha 98.1 2.2E-06 4.7E-11 70.3 4.2 34 99-132 30-64 (229)
423 cd01136 ATPase_flagellum-secre 98.1 3.9E-06 8.4E-11 73.1 4.9 45 87-132 55-100 (326)
424 cd02026 PRK Phosphoribulokinas 98.1 2.8E-06 6E-11 72.1 3.7 29 104-132 1-29 (273)
425 TIGR03263 guanyl_kin guanylate 98.1 3.2E-06 6.9E-11 66.0 3.5 26 102-127 1-26 (180)
426 KOG0064 Peroxisomal long-chain 98.1 4.8E-06 1E-10 76.6 5.0 43 90-132 496-539 (728)
427 PRK07594 type III secretion sy 98.1 3.4E-06 7.3E-11 76.0 4.0 51 87-140 141-192 (433)
428 cd03287 ABC_MSH3_euk MutS3 hom 98.1 4.5E-06 9.7E-11 68.9 4.4 43 90-132 19-63 (222)
429 PRK09099 type III secretion sy 98.0 5.3E-06 1.1E-10 74.9 4.8 51 87-140 149-200 (441)
430 KOG0062 ATPase component of AB 98.0 3.9E-06 8.5E-11 76.7 3.2 40 85-124 89-128 (582)
431 PRK13477 bifunctional pantoate 98.0 6.7E-06 1.5E-10 75.5 4.8 42 84-126 267-308 (512)
432 PRK10416 signal recognition pa 98.0 1E-05 2.3E-10 70.1 5.4 40 100-141 112-152 (318)
433 TIGR00554 panK_bact pantothena 98.0 6.6E-06 1.4E-10 70.6 4.1 33 100-132 60-95 (290)
434 TIGR02788 VirB11 P-type DNA tr 98.0 5.5E-06 1.2E-10 71.2 3.6 38 95-132 137-175 (308)
435 TIGR03498 FliI_clade3 flagella 98.0 7.7E-06 1.7E-10 73.4 4.5 52 87-141 126-178 (418)
436 cd03285 ABC_MSH2_euk MutS2 hom 98.0 9.5E-06 2.1E-10 66.7 4.7 34 90-123 18-51 (222)
437 cd02023 UMPK Uridine monophosp 98.0 6.3E-06 1.4E-10 65.7 3.3 23 104-126 1-23 (198)
438 PRK05480 uridine/cytidine kina 98.0 6.8E-06 1.5E-10 66.1 3.5 28 100-127 4-31 (209)
439 cd03284 ABC_MutS1 MutS1 homolo 97.9 8.2E-06 1.8E-10 66.8 3.9 34 90-124 19-52 (216)
440 PRK01889 GTPase RsgA; Reviewed 97.9 8.8E-06 1.9E-10 71.4 4.2 46 92-139 185-231 (356)
441 TIGR03497 FliI_clade2 flagella 97.9 1.4E-05 2.9E-10 71.8 5.1 52 87-141 123-175 (413)
442 cd03275 ABC_SMC1_euk Eukaryoti 97.9 8.8E-06 1.9E-10 67.4 3.6 30 103-132 23-53 (247)
443 PRK00635 excinuclease ABC subu 97.9 9.1E-06 2E-10 83.4 4.4 44 86-132 945-988 (1809)
444 cd02025 PanK Pantothenate kina 97.9 8.7E-06 1.9E-10 66.9 3.5 36 104-139 1-40 (220)
445 smart00382 AAA ATPases associa 97.9 2.2E-05 4.7E-10 56.2 5.2 38 102-141 2-41 (148)
446 PRK08233 hypothetical protein; 97.9 2E-05 4.2E-10 61.3 5.3 37 101-139 2-38 (182)
447 TIGR00368 Mg chelatase-related 97.9 8.9E-06 1.9E-10 74.5 3.8 54 86-141 195-249 (499)
448 TIGR01026 fliI_yscN ATPase Fli 97.9 1.1E-05 2.3E-10 73.0 4.2 44 88-132 150-194 (440)
449 TIGR00750 lao LAO/AO transport 97.9 1E-05 2.2E-10 69.2 3.5 49 89-137 21-69 (300)
450 KOG0066 eIF2-interacting prote 97.9 1.2E-05 2.6E-10 73.0 4.0 54 79-132 589-644 (807)
451 TIGR00630 uvra excinuclease AB 97.9 1E-05 2.2E-10 78.9 3.8 31 90-120 621-651 (924)
452 cd00879 Sar1 Sar1 subfamily. 97.9 1.5E-05 3.2E-10 62.4 3.9 33 91-124 9-41 (190)
453 PRK08472 fliI flagellum-specif 97.9 1.3E-05 2.9E-10 72.2 4.1 52 88-142 144-196 (434)
454 PF13476 AAA_23: AAA domain; P 97.9 1.3E-05 2.9E-10 62.4 3.6 33 93-126 11-43 (202)
455 COG1245 Predicted ATPase, RNas 97.8 1.5E-05 3.2E-10 72.3 4.1 40 92-131 352-397 (591)
456 PF13207 AAA_17: AAA domain; P 97.8 1.2E-05 2.6E-10 58.6 2.8 23 104-126 1-23 (121)
457 TIGR03496 FliI_clade1 flagella 97.8 2E-05 4.4E-10 70.6 4.6 44 88-132 124-168 (411)
458 TIGR01313 therm_gnt_kin carboh 97.8 1.5E-05 3.2E-10 61.5 3.3 33 105-142 1-33 (163)
459 PRK09183 transposase/IS protei 97.8 1.1E-05 2.4E-10 67.8 2.6 47 90-137 91-137 (259)
460 KOG0065 Pleiotropic drug resis 97.8 2.5E-05 5.5E-10 77.8 5.3 66 89-169 128-197 (1391)
461 PLN03046 D-glycerate 3-kinase; 97.8 3E-05 6.5E-10 69.9 5.2 39 101-141 211-253 (460)
462 TIGR02524 dot_icm_DotB Dot/Icm 97.8 1.6E-05 3.5E-10 70.0 3.4 27 100-126 132-158 (358)
463 PRK05922 type III secretion sy 97.8 3.4E-05 7.3E-10 69.6 5.5 49 88-139 144-193 (434)
464 PRK00349 uvrA excinuclease ABC 97.8 1.9E-05 4.2E-10 77.1 4.1 33 91-123 624-656 (943)
465 PRK06762 hypothetical protein; 97.8 2.3E-05 4.9E-10 60.6 3.7 39 102-143 2-40 (166)
466 TIGR00101 ureG urease accessor 97.8 3.5E-05 7.5E-10 62.4 4.8 29 104-132 3-31 (199)
467 cd02019 NK Nucleoside/nucleoti 97.8 2.3E-05 4.9E-10 52.9 3.1 23 104-126 1-23 (69)
468 TIGR00767 rho transcription te 97.7 4.1E-05 8.8E-10 68.6 5.2 34 94-127 160-193 (415)
469 PLN02318 phosphoribulokinase/u 97.7 2.8E-05 6.1E-10 72.7 4.3 38 101-140 64-101 (656)
470 TIGR01360 aden_kin_iso1 adenyl 97.7 1.4E-05 3E-10 62.4 2.0 31 102-132 3-37 (188)
471 PRK11545 gntK gluconate kinase 97.7 1.7E-05 3.8E-10 62.0 2.5 29 108-141 1-29 (163)
472 PRK06995 flhF flagellar biosyn 97.7 1.9E-05 4.1E-10 72.1 3.1 42 90-131 244-286 (484)
473 PRK05688 fliI flagellum-specif 97.7 2.6E-05 5.6E-10 70.7 3.9 39 87-126 154-192 (451)
474 PF00485 PRK: Phosphoribulokin 97.7 2.5E-05 5.5E-10 62.3 3.2 27 104-130 1-27 (194)
475 PRK06793 fliI flagellum-specif 97.7 4.5E-05 9.7E-10 68.8 5.1 51 88-141 143-194 (432)
476 TIGR00017 cmk cytidylate kinas 97.7 2.9E-05 6.4E-10 63.7 3.6 29 104-132 4-36 (217)
477 cd04155 Arl3 Arl3 subfamily. 97.7 5.4E-05 1.2E-09 58.0 4.8 37 103-141 15-60 (173)
478 PRK00635 excinuclease ABC subu 97.7 2.7E-05 5.8E-10 80.1 3.9 31 90-120 609-639 (1809)
479 TIGR03881 KaiC_arch_4 KaiC dom 97.7 3.4E-05 7.4E-10 62.7 3.8 40 99-138 17-56 (229)
480 PRK10751 molybdopterin-guanine 97.7 5.2E-05 1.1E-09 60.6 4.7 30 101-130 5-34 (173)
481 PRK08972 fliI flagellum-specif 97.7 5.8E-05 1.3E-09 68.3 5.4 38 88-126 149-186 (444)
482 PRK10463 hydrogenase nickel in 97.7 4E-05 8.7E-10 65.8 4.1 42 97-140 99-141 (290)
483 cd03276 ABC_SMC6_euk Eukaryoti 97.7 4.3E-05 9.4E-10 61.6 4.0 33 93-126 13-45 (198)
484 PRK06696 uridine kinase; Valid 97.7 4.6E-05 1E-09 62.2 4.2 36 100-135 20-55 (223)
485 cd03281 ABC_MSH5_euk MutS5 hom 97.7 4.4E-05 9.6E-10 62.3 4.1 29 103-131 30-60 (213)
486 KOG3354 Gluconate kinase [Carb 97.7 5.2E-05 1.1E-09 60.1 4.1 35 103-142 13-47 (191)
487 cd00227 CPT Chloramphenicol (C 97.7 3.8E-05 8.3E-10 60.2 3.4 27 101-127 1-27 (175)
488 cd01131 PilT Pilus retraction 97.7 5.1E-05 1.1E-09 61.1 4.2 29 104-132 3-33 (198)
489 cd00071 GMPK Guanosine monopho 97.7 3.4E-05 7.5E-10 58.7 2.9 24 104-127 1-24 (137)
490 PRK14722 flhF flagellar biosyn 97.6 6.7E-05 1.4E-09 66.6 4.9 42 89-130 124-166 (374)
491 PRK06936 type III secretion sy 97.6 5.7E-05 1.2E-09 68.2 4.5 50 88-140 149-199 (439)
492 PRK14723 flhF flagellar biosyn 97.6 5.9E-05 1.3E-09 72.2 4.7 40 91-130 174-214 (767)
493 PRK04863 mukB cell division pr 97.6 7.9E-05 1.7E-09 75.8 5.6 45 93-140 19-64 (1486)
494 cd02021 GntK Gluconate kinase 97.6 6.1E-05 1.3E-09 57.2 3.7 35 104-143 1-35 (150)
495 TIGR00150 HI0065_YjeE ATPase, 97.6 6.1E-05 1.3E-09 57.7 3.7 29 99-127 19-47 (133)
496 TIGR00630 uvra excinuclease AB 97.6 2.9E-05 6.3E-10 75.8 2.2 28 92-119 12-39 (924)
497 PRK00349 uvrA excinuclease ABC 97.6 3E-05 6.4E-10 75.9 2.3 28 92-119 16-43 (943)
498 PRK07429 phosphoribulokinase; 97.6 9.4E-05 2E-09 64.5 4.8 37 101-138 7-44 (327)
499 COG0194 Gmk Guanylate kinase [ 97.6 6.8E-05 1.5E-09 60.7 3.4 25 101-125 3-27 (191)
500 PRK14527 adenylate kinase; Pro 97.5 5.2E-05 1.1E-09 60.3 2.7 26 99-124 3-28 (191)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.91 E-value=6.4e-25 Score=179.75 Aligned_cols=88 Identities=31% Similarity=0.376 Sum_probs=79.3
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
+++++++.|. ||+..+|+++|+++++||+++|+||||||||||+||||++. |++|+| ++||+++...
T Consensus 2 mi~i~~l~K~------fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I--~i~g~~~~~~---- 69 (240)
T COG1126 2 MIEIKNLSKS------FGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI--TVDGEDVGDK---- 69 (240)
T ss_pred eEEEEeeeEE------eCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceE--EECCEeccch----
Confidence 5677777777 88999999999999999999999999999999999999999 899999 9999988642
Q ss_pred cccChhhHHHhhcceEEeccccccccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLSIHLFL 175 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f~~lf~ 175 (176)
.+...+|+++|||||+| +||.
T Consensus 70 -----~~~~~~R~~vGmVFQ~f-nLFP 90 (240)
T COG1126 70 -----KDILKLRRKVGMVFQQF-NLFP 90 (240)
T ss_pred -----hhHHHHHHhcCeecccc-cccc
Confidence 38888999999999999 7773
No 2
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.91 E-value=4.3e-25 Score=189.20 Aligned_cols=111 Identities=30% Similarity=0.336 Sum_probs=94.5
Q ss_pred CccceeEeccCChhhhhhhhcccccchhhhcccCCcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCC
Q 030515 34 GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGS 113 (176)
Q Consensus 34 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGS 113 (176)
.+.|+||+|+.+|..+......+.. +..+...++.+..++++||++++|||++|||+|||
T Consensus 6 ~i~nv~kiFG~~~~~a~~~~~~G~~--------------------k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGS 65 (386)
T COG4175 6 EIKNVYKIFGKNPKRALKLLDQGKS--------------------KAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGS 65 (386)
T ss_pred EeecceeecccCHHHHHHHHHcCCc--------------------HHHHHHhhCcEEeeccceeeecCCeEEEEEecCCC
Confidence 4789999999999999888544411 11222236777889999999999999999999999
Q ss_pred cHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhc-ceEEeccccccc
Q 030515 114 GKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIR-RIGSVFVLSIHL 173 (176)
Q Consensus 114 GKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rr-rig~V~Q~f~~l 173 (176)
|||||+|+|||++ |++|+| +++|+++..+ ++.+++++|| +++||||+|+.+
T Consensus 66 GKSTLvR~~NrLiept~G~i--lv~g~di~~~-------~~~~Lr~~Rr~~~sMVFQ~FaLl 118 (386)
T COG4175 66 GKSTLVRLLNRLIEPTRGEI--LVDGKDIAKL-------SAAELRELRRKKISMVFQSFALL 118 (386)
T ss_pred CHHHHHHHHhccCCCCCceE--EECCcchhcC-------CHHHHHHHHhhhhhhhhhhhccc
Confidence 9999999999999 899999 9999999875 8889999997 599999999654
No 3
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=9.8e-23 Score=174.07 Aligned_cols=94 Identities=24% Similarity=0.261 Sum_probs=83.3
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
|+++++++|.|... ..+...+++++||+|++|||++|+|.||+|||||+|++|++. |++|++ .+||+++..+
T Consensus 1 mI~l~~vsK~~~~~-~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v--~v~G~di~~l---- 73 (339)
T COG1135 1 MIELENVSKTFGQT-GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSV--FVDGQDLTAL---- 73 (339)
T ss_pred CeEEEeeeeeeccC-CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceE--EEcCEecccC----
Confidence 46778888887554 345678999999999999999999999999999999999999 999999 9999999875
Q ss_pred cccChhhHHHhhcceEEeccccccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLSIHL 173 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f~~l 173 (176)
+..+++.+|++|||+||+|..|
T Consensus 74 ---~~~~Lr~~R~~IGMIFQhFnLL 95 (339)
T COG1135 74 ---SEAELRQLRQKIGMIFQHFNLL 95 (339)
T ss_pred ---ChHHHHHHHhhccEEecccccc
Confidence 7789999999999999999433
No 4
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=4.5e-22 Score=164.68 Aligned_cols=90 Identities=23% Similarity=0.298 Sum_probs=81.3
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCccc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNR 147 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~ 147 (176)
.+++++++.+.| .+.+++|++|||++++||+++|+|+||||||||+|+|+|+. |+.|++ .++|.++..+
T Consensus 2 ~~i~~~nl~k~y-----p~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i--~~~g~~i~~~--- 71 (258)
T COG3638 2 MMIEVKNLSKTY-----PGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI--LFNGVQITKL--- 71 (258)
T ss_pred ceEEEeeeeeec-----CCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceE--Eecccchhcc---
Confidence 367888988883 28889999999999999999999999999999999999998 899999 9999999875
Q ss_pred CcccChhhHHHhhcceEEeccccccc
Q 030515 148 DLSFKAEDRVENIRRIGSVFVLSIHL 173 (176)
Q Consensus 148 d~~~~~~~~~~~rrrig~V~Q~f~~l 173 (176)
...+++.+|++|||+||.| +|
T Consensus 72 ----~~k~lr~~r~~iGmIfQ~~-nL 92 (258)
T COG3638 72 ----KGKELRKLRRDIGMIFQQF-NL 92 (258)
T ss_pred ----chHHHHHHHHhceeEeccC-Cc
Confidence 6678999999999999998 44
No 5
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.87 E-value=6.3e-22 Score=163.38 Aligned_cols=92 Identities=26% Similarity=0.276 Sum_probs=79.8
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
++++++.+.|..... .+.+|+++||++++||+++|+||||||||||+++|.++. |++|.+ .++|+++..+
T Consensus 2 i~~~~v~k~y~~~~~--~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v--~i~g~d~~~l----- 72 (226)
T COG1136 2 IELKNVSKIYGLGGE--KVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEV--LINGKDLTKL----- 72 (226)
T ss_pred cEEeeeEEEeccCCc--ceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceE--EECCEEcCcC-----
Confidence 457788888765422 278999999999999999999999999999999999999 999999 9999999875
Q ss_pred ccChhhHHHhhc-ceEEecccccccc
Q 030515 150 SFKAEDRVENIR-RIGSVFVLSIHLF 174 (176)
Q Consensus 150 ~~~~~~~~~~rr-rig~V~Q~f~~lf 174 (176)
++.++..+|+ +||||||+| +|+
T Consensus 73 --~~~~~~~~R~~~iGfvFQ~~-nLl 95 (226)
T COG1136 73 --SEKELAKLRRKKIGFVFQNF-NLL 95 (226)
T ss_pred --CHHHHHHHHHHhEEEECccC-CCC
Confidence 7778888887 499999998 444
No 6
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.85 E-value=1.8e-21 Score=169.63 Aligned_cols=86 Identities=29% Similarity=0.335 Sum_probs=75.7
Q ss_pred CcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcc
Q 030515 68 NNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLN 146 (176)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~ 146 (176)
+..++++++.|. |++..+++|+||++++||+++|+|||||||||+||+|+|+. |++|+| .++|+++...
T Consensus 3 ~~~l~i~~v~k~------yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I--~l~G~~i~~l-- 72 (352)
T COG3842 3 KPALEIRNVSKS------FGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEI--LLDGEDITDV-- 72 (352)
T ss_pred CceEEEEeeeee------cCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceE--EECCEECCCC--
Confidence 346788888888 78889999999999999999999999999999999999999 999999 9999999652
Q ss_pred cCcccChhhHHHhhcceEEecccccccc
Q 030515 147 RDLSFKAEDRVENIRRIGSVFVLSIHLF 174 (176)
Q Consensus 147 ~d~~~~~~~~~~~rrrig~V~Q~f~~lf 174 (176)
...+|.||||||+++ ||
T Consensus 73 ----------pp~kR~ig~VFQ~YA-LF 89 (352)
T COG3842 73 ----------PPEKRPIGMVFQSYA-LF 89 (352)
T ss_pred ----------ChhhcccceeecCcc-cC
Confidence 234588999999874 44
No 7
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.84 E-value=3.8e-21 Score=166.85 Aligned_cols=85 Identities=25% Similarity=0.225 Sum_probs=74.2
Q ss_pred CcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcc
Q 030515 68 NNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLN 146 (176)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~ 146 (176)
|..++++++.|. |++..+++++||++++||+++|+|||||||||+||+|+|+. |++|+| +++|++++..
T Consensus 1 M~~i~l~~v~K~------yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I--~i~g~~vt~l-- 70 (338)
T COG3839 1 MAELELKNVRKS------FGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI--LIDGRDVTDL-- 70 (338)
T ss_pred CcEEEEeeeEEE------cCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE--EECCEECCCC--
Confidence 456888888888 67655999999999999999999999999999999999999 899999 9999999753
Q ss_pred cCcccChhhHHHhhcceEEecccccc
Q 030515 147 RDLSFKAEDRVENIRRIGSVFVLSIH 172 (176)
Q Consensus 147 ~d~~~~~~~~~~~rrrig~V~Q~f~~ 172 (176)
. ...|+||||||+++.
T Consensus 71 -----~-----P~~R~iamVFQ~yAL 86 (338)
T COG3839 71 -----P-----PEKRGIAMVFQNYAL 86 (338)
T ss_pred -----C-----hhHCCEEEEeCCccc
Confidence 1 223889999998853
No 8
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.84 E-value=7.7e-21 Score=167.66 Aligned_cols=109 Identities=26% Similarity=0.237 Sum_probs=86.6
Q ss_pred CccceeEeccCChhhhhhhhcccccchhhhcccCCcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCC
Q 030515 34 GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGS 113 (176)
Q Consensus 34 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGS 113 (176)
.+.|++|+|+.+|.++.+....+. ...++...|+.+.+++++||++++||+++|+|+|||
T Consensus 2 ~~~~~~k~fg~~~~~~~~~~~~g~--------------------~~~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGs 61 (382)
T TIGR03415 2 DFKNVDVVFGDQPAEALALLDQGK--------------------TREEILDETGLVVGVANASLDIEEGEICVLMGLSGS 61 (382)
T ss_pred EEEeeEEeeCCCHHHHHHHHHcCC--------------------CHHHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCC
Confidence 368999999999999987743331 112223337888999999999999999999999999
Q ss_pred cHHHHHHHHHhcc-cCCCeEEEEECCe----eccCCcccCcccChhhHHHhh-cceEEeccccc
Q 030515 114 GKSTLACALSQAL-HWRGKLTYILDGD----NCRHGLNRDLSFKAEDRVENI-RRIGSVFVLSI 171 (176)
Q Consensus 114 GKSTLlr~L~gll-p~~G~i~~~ldG~----~v~~~~~~d~~~~~~~~~~~r-rrig~V~Q~f~ 171 (176)
|||||+|+|+|++ |++|+| +++|+ ++... +..++.+.| ++|+||||++.
T Consensus 62 GKSTLlr~L~Gl~~p~~G~I--~idG~~~~~~i~~~-------~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 62 GKSSLLRAVNGLNPVSRGSV--LVKDGDGSIDVANC-------DAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred cHHHHHHHHhCCCCCCCcEE--EECCEecccccccC-------CHHHHHHHhcCCEEEEECCCc
Confidence 9999999999999 899999 99997 34332 344555666 46999999974
No 9
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.84 E-value=3.6e-21 Score=161.26 Aligned_cols=83 Identities=27% Similarity=0.372 Sum_probs=75.3
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
|+++++++|. |+...+++++||++++||+++++|||||||||++|+||+++ |++|+| +++|+++..
T Consensus 1 MI~~~nvsk~------y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I--~i~g~~i~~----- 67 (309)
T COG1125 1 MIEFENVSKR------YGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI--LIDGEDISD----- 67 (309)
T ss_pred Cceeeeeehh------cCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceE--EECCeeccc-----
Confidence 3567777777 77889999999999999999999999999999999999999 999999 999999965
Q ss_pred cccChhhHHHhhcceEEecccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f 170 (176)
.+..++||+||||-|.-
T Consensus 68 -----~d~~~LRr~IGYviQqi 84 (309)
T COG1125 68 -----LDPVELRRKIGYVIQQI 84 (309)
T ss_pred -----CCHHHHHHhhhhhhhhc
Confidence 57889999999999953
No 10
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.84 E-value=9.9e-21 Score=157.11 Aligned_cols=88 Identities=30% Similarity=0.334 Sum_probs=81.1
Q ss_pred CcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcc
Q 030515 68 NNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLN 146 (176)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~ 146 (176)
..+++++++.+. ||+..+++++||+|++||+++|+|+||||||||+|+|.|++ |++|+| +++|+++...
T Consensus 6 ~~~I~vr~v~~~------fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI--~i~G~~i~~l-- 75 (263)
T COG1127 6 EPLIEVRGVTKS------FGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI--LIDGEDIPQL-- 75 (263)
T ss_pred cceEEEeeeeee------cCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeE--EEcCcchhcc--
Confidence 346788888888 89999999999999999999999999999999999999999 899999 9999999875
Q ss_pred cCcccChhhHHHhhcceEEecccc
Q 030515 147 RDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 147 ~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
+++++.++|+++|++||+-
T Consensus 76 -----s~~~~~~ir~r~GvlFQ~g 94 (263)
T COG1127 76 -----SEEELYEIRKRMGVLFQQG 94 (263)
T ss_pred -----CHHHHHHHHhheeEEeecc
Confidence 7788999999999999974
No 11
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.82 E-value=1.3e-20 Score=152.01 Aligned_cols=90 Identities=27% Similarity=0.297 Sum_probs=77.3
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
|+++++++|.| .+..++|+++||++++||++-|+|||||||||++|+|.+.. |+.|+| +++|.++.+.
T Consensus 1 mI~f~~V~k~Y-----~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i--~~~~~dl~~l---- 69 (223)
T COG2884 1 MIRFENVSKAY-----PGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI--LVNGHDLSRL---- 69 (223)
T ss_pred Ceeehhhhhhc-----CCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceE--EECCeecccc----
Confidence 35677888885 23456999999999999999999999999999999999998 999999 9999999886
Q ss_pred cccChhhHHHhhcceEEeccccccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLSIHL 173 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f~~l 173 (176)
...+..-+||+||+|||+|-.|
T Consensus 70 ---~~~~iP~LRR~IGvVFQD~rLL 91 (223)
T COG2884 70 ---KGREIPFLRRQIGVVFQDFRLL 91 (223)
T ss_pred ---cccccchhhheeeeEeeecccc
Confidence 4455566889999999998443
No 12
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=3.3e-20 Score=152.11 Aligned_cols=85 Identities=29% Similarity=0.286 Sum_probs=73.0
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc---c---CCCeEEEEECCeeccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL---H---WRGKLTYILDGDNCRH 143 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll---p---~~G~i~~~ldG~~v~~ 143 (176)
.++++++... |++..+|++||++++++++++|+|||||||||++|++|++. | ..|+| .++|++|..
T Consensus 7 ~~~~~~l~~y------Yg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v--~~~g~ni~~ 78 (253)
T COG1117 7 AIEVRDLNLY------YGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEV--LLDGKNIYD 78 (253)
T ss_pred eeEecceeEE------ECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEE--EECCeeccC
Confidence 3555555555 88999999999999999999999999999999999999986 3 24899 999999975
Q ss_pred CcccCcccChhhHHHhhcceEEecccc
Q 030515 144 GLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 144 ~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
...+..++||+||||||.+
T Consensus 79 --------~~~d~~~lRr~vGMVFQkP 97 (253)
T COG1117 79 --------PKVDVVELRRRVGMVFQKP 97 (253)
T ss_pred --------CCCCHHHHHHHheeeccCC
Confidence 2357889999999999986
No 13
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.80 E-value=9.6e-20 Score=153.04 Aligned_cols=78 Identities=27% Similarity=0.273 Sum_probs=70.0
Q ss_pred ccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHh
Q 030515 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN 159 (176)
Q Consensus 81 ~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~ 159 (176)
|+.+.|+...+++++||++++|++++|+||||||||||+|+|+|++ |.+|+| ++||+++..+ ...++
T Consensus 7 ~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V--~l~g~~i~~~----------~~kel 74 (258)
T COG1120 7 NLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV--LLDGKDIASL----------SPKEL 74 (258)
T ss_pred EEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEE--EECCCchhhc----------CHHHH
Confidence 3344488889999999999999999999999999999999999999 799999 9999999763 66677
Q ss_pred hcceEEecccc
Q 030515 160 IRRIGSVFVLS 170 (176)
Q Consensus 160 rrrig~V~Q~f 170 (176)
.+++|||+|.+
T Consensus 75 Ak~ia~vpQ~~ 85 (258)
T COG1120 75 AKKLAYVPQSP 85 (258)
T ss_pred hhhEEEeccCC
Confidence 88999999975
No 14
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=99.80 E-value=9.3e-21 Score=148.27 Aligned_cols=96 Identities=76% Similarity=1.138 Sum_probs=91.0
Q ss_pred eeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeeccCCcccCcccChhhHH
Q 030515 78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV 157 (176)
Q Consensus 78 ~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~ 157 (176)
+..|+.|+.+.++-.++..|--|+|.++||+|+|||||||++.+|+..+...|..+|.+||+|+++++++|++|+++++.
T Consensus 7 ~atNI~wh~~~v~k~eRq~l~~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~F~a~dR~ 86 (207)
T KOG0635|consen 7 MATNITWHESSVTKEERQKLLKQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGFKAEDRN 86 (207)
T ss_pred cccceeeecCCccHHHHHHHhcCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccccCcchhhhh
Confidence 46788999999998999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcceEEeccccccc
Q 030515 158 ENIRRIGSVFVLSIHL 173 (176)
Q Consensus 158 ~~rrrig~V~Q~f~~l 173 (176)
|..||||.|...|++.
T Consensus 87 ENIRRigeVaKLFADa 102 (207)
T KOG0635|consen 87 ENIRRIGEVAKLFADA 102 (207)
T ss_pred hhHHHHHHHHHHHhcc
Confidence 9999999999998873
No 15
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.79 E-value=2.1e-19 Score=149.59 Aligned_cols=79 Identities=32% Similarity=0.321 Sum_probs=69.6
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
+++++++.+. |+...+++|+||++.+||+++|+||||||||||+|+|+|+. |++|+| .++|+.+...
T Consensus 3 ~l~i~~v~~~------f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V--~~~g~~v~~p---- 70 (248)
T COG1116 3 LLEIEGVSKS------FGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV--LLDGRPVTGP---- 70 (248)
T ss_pred eEEEEeeEEE------eCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE--EECCcccCCC----
Confidence 4667777777 67789999999999999999999999999999999999999 899999 9999988431
Q ss_pred cccChhhHHHhhcceEEeccccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLSI 171 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f~ 171 (176)
..+++||||++.
T Consensus 71 -----------~~~~~~vFQ~~~ 82 (248)
T COG1116 71 -----------GPDIGYVFQEDA 82 (248)
T ss_pred -----------CCCEEEEeccCc
Confidence 257999999985
No 16
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.79 E-value=4.1e-19 Score=154.64 Aligned_cols=92 Identities=23% Similarity=0.292 Sum_probs=75.9
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
++++++.+.|+-. .+.+.+++++||++++||+++|+|+||||||||+|+|+|++ |++|++ .++|+++...
T Consensus 2 I~~~~lsk~y~~~--~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I--~i~G~~i~~~----- 72 (343)
T TIGR02314 2 IKLSNITKVFHQG--TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSV--IVDGQDLTTL----- 72 (343)
T ss_pred EEEEEEEEEECCC--CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE--EECCEECCcC-----
Confidence 5677888885311 11357999999999999999999999999999999999999 899999 9999998653
Q ss_pred ccChhhHHHhhcceEEecccccccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLSIHLF 174 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f~~lf 174 (176)
+..+++..+++||||||++ ++|
T Consensus 73 --~~~~l~~~r~~Ig~v~Q~~-~l~ 94 (343)
T TIGR02314 73 --SNSELTKARRQIGMIFQHF-NLL 94 (343)
T ss_pred --CHHHHHHHhcCEEEEECCc-ccc
Confidence 4456666778899999997 444
No 17
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.78 E-value=5.1e-19 Score=146.93 Aligned_cols=91 Identities=24% Similarity=0.181 Sum_probs=73.9
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCccc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNR 147 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~ 147 (176)
.+++++++.+.|.... ....+++++||++.+||+++|+|+||||||||+|+|.|+. |+.|+| .++|+.+...
T Consensus 2 ~~l~v~nl~~~y~~~~--~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I--~~~G~~~~~~--- 74 (252)
T COG1124 2 TLLSVRNLSIVYGGGK--FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSI--LLDGKPLAPK--- 74 (252)
T ss_pred ceEEEeceEEEecCCc--chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceE--EECCcccCcc---
Confidence 4678888888853331 1115999999999999999999999999999999999999 899999 9999887543
Q ss_pred CcccChhhHHHhhcceEEecccccc
Q 030515 148 DLSFKAEDRVENIRRIGSVFVLSIH 172 (176)
Q Consensus 148 d~~~~~~~~~~~rrrig~V~Q~f~~ 172 (176)
.....+++.|.||||++..
T Consensus 75 ------~~~~~~~~~VQmVFQDp~~ 93 (252)
T COG1124 75 ------KRAKAFYRPVQMVFQDPYS 93 (252)
T ss_pred ------ccchhhccceeEEecCCcc
Confidence 2222566789999999744
No 18
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=8.4e-19 Score=155.56 Aligned_cols=108 Identities=22% Similarity=0.284 Sum_probs=85.8
Q ss_pred CccceeEeccCChhhhhhhhcccccchhhhcccCCcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCC
Q 030515 34 GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGS 113 (176)
Q Consensus 34 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGS 113 (176)
.+.+++|+|+.+|..+.+....+ ++..++.+. |+.+.+++++||++++||+++|+|+|||
T Consensus 6 ~~~~~~k~fg~~~~~~~~~~~~~--------------~~~~~~~~~------~~~~~~L~~isl~i~~Gei~~LvG~NGs 65 (400)
T PRK10070 6 EIKNLYKIFGEHPQRAFKYIEQG--------------LSKEQILEK------TGLSLGVKDASLAIEEGEIFVIMGLSGS 65 (400)
T ss_pred EEeeeEEecCCChHHHHHHHhcc--------------ccHHHHHhh------cCCeEEEEeEEEEEcCCCEEEEECCCCc
Confidence 56889999999987775553221 334455555 6666789999999999999999999999
Q ss_pred cHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhh-cceEEecccc
Q 030515 114 GKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENI-RRIGSVFVLS 170 (176)
Q Consensus 114 GKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~r-rrig~V~Q~f 170 (176)
|||||+++|+|++ |++|+| +++|+++... +..++...+ ++|+||||++
T Consensus 66 GKSTLLr~I~Gl~~p~sG~I--~i~G~~i~~~-------~~~~l~~~~~~~igyv~Q~~ 115 (400)
T PRK10070 66 GKSTMVRLLNRLIEPTRGQV--LIDGVDIAKI-------SDAELREVRRKKIAMVFQSF 115 (400)
T ss_pred hHHHHHHHHHcCCCCCCCEE--EECCEECCcC-------CHHHHHHHHhCCEEEEECCC
Confidence 9999999999999 899999 9999998643 333444444 4699999986
No 19
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.77 E-value=4.8e-19 Score=151.43 Aligned_cols=86 Identities=26% Similarity=0.274 Sum_probs=71.4
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
+.++++.+. ++...+++++|++|+.||+++++||||||||||+|+|+|++ |+.|+| .++|+.+..
T Consensus 3 i~i~~~~~~------~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I--~~~~~~l~D------ 68 (345)
T COG1118 3 IRINNVKKR------FGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRI--RLNGRVLFD------ 68 (345)
T ss_pred eeehhhhhh------cccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceE--EECCEeccc------
Confidence 445555555 78889999999999999999999999999999999999999 999999 999996532
Q ss_pred ccChhhHHHhhcceEEecccccccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLSIHLF 174 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f~~lf 174 (176)
........|+||+|||+++ ||
T Consensus 69 ---~~~~~~~~R~VGfvFQ~YA-LF 89 (345)
T COG1118 69 ---VSNLAVRDRKVGFVFQHYA-LF 89 (345)
T ss_pred ---hhccchhhcceeEEEechh-hc
Confidence 1233444588999999986 55
No 20
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=2.9e-18 Score=148.24 Aligned_cols=95 Identities=24% Similarity=0.235 Sum_probs=78.3
Q ss_pred CcEEEeccceeeeccccc----cCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeecc
Q 030515 68 NNLCQNSTVAKSTNILWH----KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCR 142 (176)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~----~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~ 142 (176)
..+++++++.+.|..... .+.+.+++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|+++.
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i--~~~g~~l~ 80 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGEL--YYQGQDLL 80 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEE--EECCEEcC
Confidence 456889999988753211 12367999999999999999999999999999999999999 789999 99999986
Q ss_pred CCcccCcccChhhHHHhhcceEEeccccc
Q 030515 143 HGLNRDLSFKAEDRVENIRRIGSVFVLSI 171 (176)
Q Consensus 143 ~~~~~d~~~~~~~~~~~rrrig~V~Q~f~ 171 (176)
.. +..++..++++|+||||++.
T Consensus 81 ~~-------~~~~~~~~r~~i~~v~Q~~~ 102 (327)
T PRK11308 81 KA-------DPEAQKLLRQKIQIVFQNPY 102 (327)
T ss_pred cC-------CHHHHHHHhCCEEEEEcCch
Confidence 53 44556677788999999863
No 21
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.76 E-value=1.7e-18 Score=138.39 Aligned_cols=93 Identities=25% Similarity=0.282 Sum_probs=79.4
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
+++++++.+.-.-. .+.+.+|++++|.|++||.++|+||||||||||+-.++|+. |++|++ .+.|+.+..+
T Consensus 6 ii~~~~l~ktvg~~--~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV--~l~G~~L~~l---- 77 (228)
T COG4181 6 IIEVHHLSKTVGQG--EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEV--RLLGQPLHKL---- 77 (228)
T ss_pred eeehhhhhhhhcCC--CcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceE--EEcCcchhhc----
Confidence 45566665553333 56789999999999999999999999999999999999998 999999 9999999876
Q ss_pred cccChhhHHHhhc-ceEEecccccccc
Q 030515 149 LSFKAEDRVENIR-RIGSVFVLSIHLF 174 (176)
Q Consensus 149 ~~~~~~~~~~~rr-rig~V~Q~f~~lf 174 (176)
+++.+..+|. ++|+|||.| +|+
T Consensus 78 ---dEd~rA~~R~~~vGfVFQSF-~Li 100 (228)
T COG4181 78 ---DEDARAALRARHVGFVFQSF-HLI 100 (228)
T ss_pred ---CHHHHHHhhccceeEEEEee-ecc
Confidence 7788888885 599999998 444
No 22
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.75 E-value=5.3e-18 Score=146.91 Aligned_cols=95 Identities=20% Similarity=0.155 Sum_probs=78.6
Q ss_pred CCcEEEeccceeeecccc-------ccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECC
Q 030515 67 GNNLCQNSTVAKSTNILW-------HKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDG 138 (176)
Q Consensus 67 g~~~~~~~~~~~~~~~~~-------~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG 138 (176)
...+++++++.+.|.... ..+...+++++||++++||+++|+|+||||||||+++|+|++ |++|+| +++|
T Consensus 5 ~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I--~~~G 82 (331)
T PRK15079 5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEV--AWLG 82 (331)
T ss_pred CCceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEE--EECC
Confidence 346789999999875310 012467999999999999999999999999999999999999 799999 9999
Q ss_pred eeccCCcccCcccChhhHHHhhcceEEecccc
Q 030515 139 DNCRHGLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 139 ~~v~~~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
+++... +..+...++++|+||||++
T Consensus 83 ~~i~~~-------~~~~~~~~r~~i~~v~Q~~ 107 (331)
T PRK15079 83 KDLLGM-------KDDEWRAVRSDIQMIFQDP 107 (331)
T ss_pred EECCcC-------CHHHHHHHhCceEEEecCc
Confidence 998653 4445566777899999986
No 23
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=4.2e-18 Score=139.48 Aligned_cols=83 Identities=27% Similarity=0.298 Sum_probs=68.3
Q ss_pred eccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCccc
Q 030515 73 NSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSF 151 (176)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~ 151 (176)
++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|++ |++|+| .++|+++...
T Consensus 3 ~~~l~~~------~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i--~~~g~~~~~~------- 67 (235)
T cd03261 3 LRGLTKS------FGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV--LIDGEDISGL------- 67 (235)
T ss_pred EEEEEEE------ECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EECCEEcccc-------
Confidence 4455555 56667999999999999999999999999999999999999 799999 9999988542
Q ss_pred ChhhHHHhhcceEEecccc
Q 030515 152 KAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 152 ~~~~~~~~rrrig~V~Q~f 170 (176)
+..+....+++|+||+|++
T Consensus 68 ~~~~~~~~~~~i~~v~q~~ 86 (235)
T cd03261 68 SEAELYRLRRRMGMLFQSG 86 (235)
T ss_pred ChhhHHHHhcceEEEccCc
Confidence 2223345567899999986
No 24
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=3e-18 Score=149.55 Aligned_cols=85 Identities=24% Similarity=0.305 Sum_probs=73.0
Q ss_pred CCcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCc
Q 030515 67 GNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGL 145 (176)
Q Consensus 67 g~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~ 145 (176)
.+.+++++++.+. |+...+++++||++++||+++|+||||||||||+|+|+|++ |++|+| .++|+++...
T Consensus 3 ~~~~l~~~~l~~~------~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I--~~~g~~i~~~- 73 (351)
T PRK11432 3 QKNFVVLKNITKR------FGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQI--FIDGEDVTHR- 73 (351)
T ss_pred CCcEEEEEeEEEE------ECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEE--EECCEECCCC-
Confidence 3567888888888 55667999999999999999999999999999999999999 799999 9999998542
Q ss_pred ccCcccChhhHHHhhcceEEeccccc
Q 030515 146 NRDLSFKAEDRVENIRRIGSVFVLSI 171 (176)
Q Consensus 146 ~~d~~~~~~~~~~~rrrig~V~Q~f~ 171 (176)
. ..+|+|+||||+++
T Consensus 74 ---------~--~~~r~ig~vfQ~~~ 88 (351)
T PRK11432 74 ---------S--IQQRDICMVFQSYA 88 (351)
T ss_pred ---------C--HHHCCEEEEeCCcc
Confidence 1 12478999999873
No 25
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=6.5e-18 Score=145.95 Aligned_cols=93 Identities=20% Similarity=0.233 Sum_probs=75.0
Q ss_pred CcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhccc-----CCCeEEEEECCeecc
Q 030515 68 NNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-----WRGKLTYILDGDNCR 142 (176)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp-----~~G~i~~~ldG~~v~ 142 (176)
|.+++++++.+.|... .+...+|+++||++++||+++|+|+||||||||+++|.|+++ ++|+| .++|+++.
T Consensus 1 m~~L~v~~l~~~~~~~--~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i--~~~G~~i~ 76 (326)
T PRK11022 1 MALLNVDKLSVHFGDE--SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKL--EFNGQDLQ 76 (326)
T ss_pred CceEEEeCeEEEECCC--CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEE--EECCEECC
Confidence 3467888888886421 122579999999999999999999999999999999999983 68999 99999986
Q ss_pred CCcccCcccChhhHHHhhc-ceEEeccccc
Q 030515 143 HGLNRDLSFKAEDRVENIR-RIGSVFVLSI 171 (176)
Q Consensus 143 ~~~~~d~~~~~~~~~~~rr-rig~V~Q~f~ 171 (176)
.. +..++..+|+ +|+||||++.
T Consensus 77 ~~-------~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 77 RI-------SEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred cC-------CHHHHHHHhCCCEEEEecCch
Confidence 53 4455555554 6999999863
No 26
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=5.6e-18 Score=147.17 Aligned_cols=90 Identities=20% Similarity=0.248 Sum_probs=72.9
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
++++++.+.|+.. .....+++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|.++...
T Consensus 2 i~i~~l~~~y~~~--~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I--~~~g~~i~~~----- 72 (343)
T PRK11153 2 IELKNISKVFPQG--GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRV--LVDGQDLTAL----- 72 (343)
T ss_pred EEEEeEEEEeCCC--CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE--EECCEECCcC-----
Confidence 5677777774210 01357999999999999999999999999999999999999 799999 9999998643
Q ss_pred ccChhhHHHhhcceEEeccccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLSI 171 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f~ 171 (176)
+..++...+++|+||||++.
T Consensus 73 --~~~~~~~~~~~ig~v~q~~~ 92 (343)
T PRK11153 73 --SEKELRKARRQIGMIFQHFN 92 (343)
T ss_pred --CHHHHHHHhcCEEEEeCCCc
Confidence 33455566778999999863
No 27
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.75 E-value=5e-18 Score=137.23 Aligned_cols=87 Identities=24% Similarity=0.260 Sum_probs=69.4
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
++++++.+.|+- +...+++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|+++...
T Consensus 2 l~~~~l~~~~~~----~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i--~~~g~~~~~~----- 70 (216)
T TIGR00960 2 IRFEQVSKAYPG----GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKI--RFNGQDLTRL----- 70 (216)
T ss_pred eEEEEEEEEecC----CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EECCEehhhc-----
Confidence 456666666311 1246899999999999999999999999999999999999 799999 9999988542
Q ss_pred ccChhhHHHhhcceEEecccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f 170 (176)
...+....+++++|++|++
T Consensus 71 --~~~~~~~~~~~i~~~~q~~ 89 (216)
T TIGR00960 71 --RGREIPFLRRHIGMVFQDH 89 (216)
T ss_pred --ChhHHHHHHHhceEEecCc
Confidence 2233445567899999986
No 28
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.75 E-value=3.2e-18 Score=149.51 Aligned_cols=86 Identities=22% Similarity=0.248 Sum_probs=72.9
Q ss_pred CcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcc
Q 030515 68 NNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLN 146 (176)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~ 146 (176)
+.+++++++.+. |+...+++++||++++||+++|+||||||||||+|+|+|++ |++|+| .++|+++...
T Consensus 2 ~~~l~~~~l~~~------~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I--~i~g~~~~~~-- 71 (353)
T TIGR03265 2 SPYLSIDNIRKR------FGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTI--YQGGRDITRL-- 71 (353)
T ss_pred CcEEEEEEEEEE------eCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEE--EECCEECCCC--
Confidence 446778888887 56667999999999999999999999999999999999999 899999 9999998542
Q ss_pred cCcccChhhHHHhhcceEEecccccccc
Q 030515 147 RDLSFKAEDRVENIRRIGSVFVLSIHLF 174 (176)
Q Consensus 147 ~d~~~~~~~~~~~rrrig~V~Q~f~~lf 174 (176)
. ..+|+|+||||++ .+|
T Consensus 72 -----~-----~~~r~ig~v~Q~~-~lf 88 (353)
T TIGR03265 72 -----P-----PQKRDYGIVFQSY-ALF 88 (353)
T ss_pred -----C-----HHHCCEEEEeCCc-ccC
Confidence 1 1247899999987 444
No 29
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.74 E-value=4.3e-18 Score=146.06 Aligned_cols=92 Identities=24% Similarity=0.228 Sum_probs=75.1
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhccc-C-----CCeEEEEECCeeccCC
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-W-----RGKLTYILDGDNCRHG 144 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp-~-----~G~i~~~ldG~~v~~~ 144 (176)
++++++...|... .+.+.+++++||++++||+++|+|+|||||||++++|.|++| . .|+| .++|+++..+
T Consensus 2 L~v~nL~v~f~~~--~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i--~f~g~~l~~l 77 (316)
T COG0444 2 LEVKNLSVSFPTD--AGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEI--LFDGKDLLSL 77 (316)
T ss_pred ceEeeeEEEEecC--CccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEE--EECCcccccC
Confidence 5677777665443 346789999999999999999999999999999999999996 3 3677 9999998765
Q ss_pred cccCcccChhhHHHhhc-ceEEeccccccc
Q 030515 145 LNRDLSFKAEDRVENIR-RIGSVFVLSIHL 173 (176)
Q Consensus 145 ~~~d~~~~~~~~~~~rr-rig~V~Q~f~~l 173 (176)
++++++++|. +|+||||++.+.
T Consensus 78 -------~~~~~~~iRG~~I~mIfQ~p~~s 100 (316)
T COG0444 78 -------SEKELRKIRGKEIAMIFQDPMTS 100 (316)
T ss_pred -------CHHHHHhhcCceEEEEEcCchhh
Confidence 6666667774 699999997553
No 30
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=3.3e-18 Score=149.56 Aligned_cols=86 Identities=24% Similarity=0.204 Sum_probs=71.9
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCccc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNR 147 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~ 147 (176)
.+++++++.+.|. +...+++++||++++||+++|+||||||||||+|+|+|++ |++|+| .++|+++...
T Consensus 2 ~~l~i~~l~~~~~-----~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I--~~~g~~i~~~--- 71 (356)
T PRK11650 2 AGLKLQAVRKSYD-----GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEI--WIGGRVVNEL--- 71 (356)
T ss_pred CEEEEEeEEEEeC-----CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEE--EECCEECCCC---
Confidence 4577888888731 5567999999999999999999999999999999999999 899999 9999998542
Q ss_pred CcccChhhHHHhhcceEEecccccccc
Q 030515 148 DLSFKAEDRVENIRRIGSVFVLSIHLF 174 (176)
Q Consensus 148 d~~~~~~~~~~~rrrig~V~Q~f~~lf 174 (176)
. ..+|+||||||++ .+|
T Consensus 72 ----~-----~~~r~ig~v~Q~~-~lf 88 (356)
T PRK11650 72 ----E-----PADRDIAMVFQNY-ALY 88 (356)
T ss_pred ----C-----HHHCCEEEEeCCc-ccc
Confidence 1 1237899999987 344
No 31
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.74 E-value=8.2e-18 Score=135.66 Aligned_cols=86 Identities=30% Similarity=0.351 Sum_probs=69.8
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
++++++.+.+. +...+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|+++...
T Consensus 2 l~~~~l~~~~~-----~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i--~~~g~~~~~~----- 69 (214)
T TIGR02673 2 IEFHNVSKAYP-----GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV--RIAGEDVNRL----- 69 (214)
T ss_pred EEEEeeeEEeC-----CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE--EECCEEcccC-----
Confidence 45666666631 3457999999999999999999999999999999999998 799999 9999988642
Q ss_pred ccChhhHHHhhcceEEecccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f 170 (176)
...+....+++++|++|.+
T Consensus 70 --~~~~~~~~~~~i~~~~q~~ 88 (214)
T TIGR02673 70 --RGRQLPLLRRRIGVVFQDF 88 (214)
T ss_pred --CHHHHHHHHhheEEEecCh
Confidence 2233344567899999986
No 32
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.74 E-value=4.7e-18 Score=152.28 Aligned_cols=85 Identities=26% Similarity=0.215 Sum_probs=75.5
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
.+++.++.|. |+.+.+++++||++.+|||.+|+|+||+|||||+++|.|++ |++|+| ++||+.+.-.
T Consensus 4 ~l~~~~itK~------f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI--~v~G~~v~~~---- 71 (501)
T COG3845 4 ALEMRGITKR------FPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI--RVDGKEVRIK---- 71 (501)
T ss_pred eEEEeccEEE------cCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceE--EECCEEeccC----
Confidence 4778888888 78889999999999999999999999999999999999999 999999 9999999642
Q ss_pred cccChhhHHHhhcceEEeccccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLSI 171 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f~ 171 (176)
...+..+-.||||+|+|.
T Consensus 72 -----sP~dA~~~GIGMVhQHF~ 89 (501)
T COG3845 72 -----SPRDAIRLGIGMVHQHFM 89 (501)
T ss_pred -----CHHHHHHcCCcEEeeccc
Confidence 344555668999999993
No 33
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.74 E-value=7.2e-18 Score=140.15 Aligned_cols=89 Identities=22% Similarity=0.278 Sum_probs=75.8
Q ss_pred EEEeccceeeeccccccCc-ccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCccc
Q 030515 70 LCQNSTVAKSTNILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNR 147 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~-~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~ 147 (176)
+++++++... |.. ..+++++||++++|+.++|+|+||||||||+++|+|++ |+.|.+ .++|.++..
T Consensus 3 ~i~~~~l~~~------y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v--~~~g~~~~~---- 70 (235)
T COG1122 3 MIEAENLSFR------YPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV--LVDGLDTSS---- 70 (235)
T ss_pred eEEEEEEEEE------cCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEE--EECCeeccc----
Confidence 3455555555 433 58999999999999999999999999999999999999 899999 999998852
Q ss_pred CcccChhhHHHhhcceEEeccccccccc
Q 030515 148 DLSFKAEDRVENIRRIGSVFVLSIHLFL 175 (176)
Q Consensus 148 d~~~~~~~~~~~rrrig~V~Q~f~~lf~ 175 (176)
.....++++++|+|||++.++|+
T Consensus 71 -----~~~~~~~~~~vG~VfQnpd~q~~ 93 (235)
T COG1122 71 -----EKSLLELRQKVGLVFQNPDDQLF 93 (235)
T ss_pred -----hhhHHHhhcceEEEEECcccccc
Confidence 35777888999999999988775
No 34
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.74 E-value=8.4e-18 Score=138.01 Aligned_cols=85 Identities=24% Similarity=0.303 Sum_probs=69.6
Q ss_pred EEeccceeeeccccccC-cccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 71 CQNSTVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~-~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
++++++.+. |+ ...+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|+++...
T Consensus 2 l~~~~l~~~------~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i--~~~g~~~~~~---- 69 (243)
T TIGR02315 2 LEVENLSKV------YPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI--LLEGTDITKL---- 69 (243)
T ss_pred eEEEeeeee------cCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEE--EECCEEhhhC----
Confidence 445566655 54 567999999999999999999999999999999999999 799999 9999988542
Q ss_pred cccChhhHHHhhcceEEecccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f 170 (176)
...+....+++++||+|.+
T Consensus 70 ---~~~~~~~~~~~i~~v~q~~ 88 (243)
T TIGR02315 70 ---RGKKLRKLRRRIGMIFQHY 88 (243)
T ss_pred ---CHHHHHHHHhheEEEcCCC
Confidence 2233444567899999986
No 35
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.74 E-value=1.2e-17 Score=144.52 Aligned_cols=95 Identities=20% Similarity=0.192 Sum_probs=77.6
Q ss_pred cCCcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cC---CCeEEEEECCeec
Q 030515 66 SGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HW---RGKLTYILDGDNC 141 (176)
Q Consensus 66 ~g~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~---~G~i~~~ldG~~v 141 (176)
+...+++++++.+.|... .+.+.+++++||++++||+++|+|+||||||||+++|+|++ |. +|+| +++|+++
T Consensus 8 ~~~~~L~i~~l~~~~~~~--~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I--~~~G~~i 83 (330)
T PRK09473 8 QADALLDVKDLRVTFSTP--DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSA--TFNGREI 83 (330)
T ss_pred CCCceEEEeCeEEEEecC--CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEE--EECCEEC
Confidence 345578899998885321 23467999999999999999999999999999999999999 54 8999 9999998
Q ss_pred cCCcccCcccChhhHHHhhc-ceEEeccccc
Q 030515 142 RHGLNRDLSFKAEDRVENIR-RIGSVFVLSI 171 (176)
Q Consensus 142 ~~~~~~d~~~~~~~~~~~rr-rig~V~Q~f~ 171 (176)
... +..+++.+|+ +|+||||++.
T Consensus 84 ~~~-------~~~~~~~~r~~~i~~v~Q~~~ 107 (330)
T PRK09473 84 LNL-------PEKELNKLRAEQISMIFQDPM 107 (330)
T ss_pred CcC-------CHHHHHHHhcCCEEEEEcCch
Confidence 654 4456666664 6999999963
No 36
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1e-17 Score=144.78 Aligned_cols=93 Identities=18% Similarity=0.171 Sum_probs=74.9
Q ss_pred CcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhccc-----CCCeEEEEECCeecc
Q 030515 68 NNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-----WRGKLTYILDGDNCR 142 (176)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp-----~~G~i~~~ldG~~v~ 142 (176)
|.+++++++.+.|... .+...+++++||++++||+++|+|+||||||||+++|.|+++ ++|+| .++|+++.
T Consensus 1 ~~~L~v~~l~~~y~~~--~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i--~~~g~~i~ 76 (330)
T PRK15093 1 MPLLDIRNLTIEFKTS--DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRM--RFDDIDLL 76 (330)
T ss_pred CCeEEEeeeEEEEeCC--CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEE--EECCEECC
Confidence 3467888888886321 245679999999999999999999999999999999999983 67999 99999986
Q ss_pred CCcccCcccChhhHHHhhc-ceEEeccccc
Q 030515 143 HGLNRDLSFKAEDRVENIR-RIGSVFVLSI 171 (176)
Q Consensus 143 ~~~~~d~~~~~~~~~~~rr-rig~V~Q~f~ 171 (176)
.. +..++..+++ +|+||||++.
T Consensus 77 ~~-------~~~~~~~~~~~~i~~v~Q~~~ 99 (330)
T PRK15093 77 RL-------SPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred cC-------CHHHHHHHhCCCEEEEecCcc
Confidence 53 3344555554 6999999874
No 37
>PRK10908 cell division protein FtsE; Provisional
Probab=99.74 E-value=1.1e-17 Score=135.97 Aligned_cols=86 Identities=23% Similarity=0.239 Sum_probs=70.0
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
++++++.+.|. +...+++++||++++|++++|+|+||||||||+++|+|++ |++|+| .++|+++...
T Consensus 2 l~~~~l~~~~~-----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~i~~~----- 69 (222)
T PRK10908 2 IRFEHVSKAYL-----GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKI--WFSGHDITRL----- 69 (222)
T ss_pred EEEEeeEEEec-----CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EECCEEcccC-----
Confidence 45667666631 4457999999999999999999999999999999999999 799999 9999988542
Q ss_pred ccChhhHHHhhcceEEecccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f 170 (176)
...+....+++++|++|++
T Consensus 70 --~~~~~~~~~~~i~~~~q~~ 88 (222)
T PRK10908 70 --KNREVPFLRRQIGMIFQDH 88 (222)
T ss_pred --ChhHHHHHHhheEEEecCc
Confidence 2233444567899999986
No 38
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.74 E-value=2.3e-18 Score=138.80 Aligned_cols=94 Identities=24% Similarity=0.240 Sum_probs=79.3
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
.++++++.|+ ||...+|+++|++-++|+++.|+|-|||||||++||||=+. |+.|+| .++|+.++-..++|
T Consensus 6 ~l~v~dlHK~------~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I--~v~geei~~k~~~~ 77 (256)
T COG4598 6 ALEVEDLHKR------YGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSI--RVNGEEIRLKRDKD 77 (256)
T ss_pred ceehhHHHhh------cccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceE--EECCeEEEeeeCCC
Confidence 4566666666 89999999999999999999999999999999999999998 999999 99999987544443
Q ss_pred --c-ccChhhHHHhhcceEEeccccc
Q 030515 149 --L-SFKAEDRVENIRRIGSVFVLSI 171 (176)
Q Consensus 149 --~-~~~~~~~~~~rrrig~V~Q~f~ 171 (176)
+ ..+...+..+|.+++||||+|.
T Consensus 78 G~l~~ad~~q~~r~Rs~L~mVFQ~FN 103 (256)
T COG4598 78 GQLKPADKRQLQRLRTRLGMVFQHFN 103 (256)
T ss_pred CCeeeCCHHHHHHHHHHhhHhhhhcc
Confidence 2 3345566677778999999993
No 39
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1.4e-17 Score=136.35 Aligned_cols=90 Identities=23% Similarity=0.260 Sum_probs=71.0
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
+++++++.+.|... .....+++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|+++...
T Consensus 5 ~l~~~~l~~~~~~~--~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i--~~~g~~i~~~---- 76 (233)
T PRK11629 5 LLQCDNLCKRYQEG--SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDV--IFNGQPMSKL---- 76 (233)
T ss_pred eEEEEeEEEEcCCC--CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEE--EECCEEcCcC----
Confidence 56777777774210 00146999999999999999999999999999999999998 799999 9999988642
Q ss_pred cccChhhHHHhh-cceEEecccc
Q 030515 149 LSFKAEDRVENI-RRIGSVFVLS 170 (176)
Q Consensus 149 ~~~~~~~~~~~r-rrig~V~Q~f 170 (176)
+..+....+ ++++|++|++
T Consensus 77 ---~~~~~~~~~~~~i~~v~q~~ 96 (233)
T PRK11629 77 ---SSAAKAELRNQKLGFIYQFH 96 (233)
T ss_pred ---CHHHHHHHHhccEEEEecCc
Confidence 333334444 5799999986
No 40
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.73 E-value=1.1e-17 Score=143.30 Aligned_cols=82 Identities=21% Similarity=0.153 Sum_probs=71.4
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
+++++++.+. |+...+++++||++++||+++|+||||||||||+++|+|++ |++|++ .++|.++...
T Consensus 7 ~i~i~~l~k~------~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v--~i~G~~~~~~---- 74 (306)
T PRK13537 7 PIDFRNVEKR------YGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI--SLCGEPVPSR---- 74 (306)
T ss_pred eEEEEeEEEE------ECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEE--EECCEecccc----
Confidence 5778888887 66678999999999999999999999999999999999999 899999 9999988541
Q ss_pred cccChhhHHHhhcceEEecccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f 170 (176)
..+.+++||||+|.+
T Consensus 75 -------~~~~~~~ig~v~q~~ 89 (306)
T PRK13537 75 -------ARHARQRVGVVPQFD 89 (306)
T ss_pred -------hHHHHhcEEEEeccC
Confidence 124567899999986
No 41
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.73 E-value=8.9e-18 Score=147.34 Aligned_cols=77 Identities=30% Similarity=0.391 Sum_probs=66.9
Q ss_pred cCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhh-cce
Q 030515 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENI-RRI 163 (176)
Q Consensus 86 ~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~r-rri 163 (176)
|+.+.+++++||++++||+++|+|+||||||||+++|+|++ |++|++ +++|+++... +..++.+++ ++|
T Consensus 3 ~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I--~i~G~~i~~~-------~~~~~~~~rr~~i 73 (363)
T TIGR01186 3 TGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQI--FIDGENIMKQ-------SPVELREVRRKKI 73 (363)
T ss_pred cCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEE--EECCEECCcC-------CHHHHHHHHhCcE
Confidence 67778999999999999999999999999999999999999 799999 9999998753 344444444 579
Q ss_pred EEeccccc
Q 030515 164 GSVFVLSI 171 (176)
Q Consensus 164 g~V~Q~f~ 171 (176)
+||||.+.
T Consensus 74 ~~v~Q~~~ 81 (363)
T TIGR01186 74 GMVFQQFA 81 (363)
T ss_pred EEEECCCc
Confidence 99999873
No 42
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.73 E-value=1.2e-17 Score=145.10 Aligned_cols=84 Identities=21% Similarity=0.142 Sum_probs=72.9
Q ss_pred CcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcc
Q 030515 68 NNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLN 146 (176)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~ 146 (176)
+.+++++++.+. |+...+++++||++++|++++|+||||||||||+++|+|++ |++|++ .++|.++..
T Consensus 39 ~~~i~i~nl~k~------y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i--~i~G~~~~~--- 107 (340)
T PRK13536 39 TVAIDLAGVSKS------YGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI--TVLGVPVPA--- 107 (340)
T ss_pred ceeEEEEEEEEE------ECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEE--EECCEECCc---
Confidence 456888888888 66678999999999999999999999999999999999999 899999 999998853
Q ss_pred cCcccChhhHHHhhcceEEecccc
Q 030515 147 RDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 147 ~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
...+.+++|||++|++
T Consensus 108 --------~~~~~~~~ig~v~q~~ 123 (340)
T PRK13536 108 --------RARLARARIGVVPQFD 123 (340)
T ss_pred --------chHHHhccEEEEeCCc
Confidence 1234567899999985
No 43
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=99.73 E-value=6.6e-19 Score=140.46 Aligned_cols=92 Identities=60% Similarity=0.952 Sum_probs=82.0
Q ss_pred ccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeeccCCcccCcccChhhHHHhh
Q 030515 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENI 160 (176)
Q Consensus 81 ~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~r 160 (176)
|+.|+...++..++..+..++|.++|++|+|||||||++.+|...|...|..+|+|||+++++++++|++|+.+++.++.
T Consensus 2 ni~w~~~~v~~~~r~~~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eni 81 (197)
T COG0529 2 NIVWHPHSVTKQEREALKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENI 81 (197)
T ss_pred CccccccccCHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHH
Confidence 34555555566666777889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEecccccc
Q 030515 161 RRIGSVFVLSIH 172 (176)
Q Consensus 161 rrig~V~Q~f~~ 172 (176)
||||+|...+++
T Consensus 82 RRvaevAkll~d 93 (197)
T COG0529 82 RRVAEVAKLLAD 93 (197)
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
No 44
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=1.5e-17 Score=135.89 Aligned_cols=85 Identities=26% Similarity=0.289 Sum_probs=69.6
Q ss_pred EEeccceeeeccccccCcc----cceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCc
Q 030515 71 CQNSTVAKSTNILWHKNSV----DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGL 145 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~----~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~ 145 (176)
++++++.+. |+.. .+++++||++++||+++|+|+||||||||+++|+|++ |+.|++ .++|+++...
T Consensus 2 i~~~~l~~~------~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~~~~~- 72 (233)
T cd03258 2 IELKNVSKV------FGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSV--LVDGTDLTLL- 72 (233)
T ss_pred eEEecceEE------ccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE--EECCEEcccC-
Confidence 456666666 4443 7999999999999999999999999999999999999 799999 9999988542
Q ss_pred ccCcccChhhHHHhhcceEEecccc
Q 030515 146 NRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 146 ~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
...+....+++++|++|++
T Consensus 73 ------~~~~~~~~~~~i~~~~q~~ 91 (233)
T cd03258 73 ------SGKELRKARRRIGMIFQHF 91 (233)
T ss_pred ------CHHHHHHHHhheEEEccCc
Confidence 2233344567899999986
No 45
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.73 E-value=9.6e-18 Score=138.39 Aligned_cols=83 Identities=17% Similarity=0.219 Sum_probs=70.6
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
+++++++... ||..++|+++||++++||+++|+|+||+||||++++|+|++ +.+|+| .++|+++...
T Consensus 3 mL~v~~l~~~------YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I--~~~G~dit~~---- 70 (237)
T COG0410 3 MLEVENLSAG------YGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRI--IFDGEDITGL---- 70 (237)
T ss_pred ceeEEeEeec------ccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeE--EECCeecCCC----
Confidence 4555555544 89999999999999999999999999999999999999999 579999 9999999864
Q ss_pred cccChhhHHHhhcceEEeccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVL 169 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~ 169 (176)
...+..++.|+||+|-
T Consensus 71 -----p~~~r~r~Gi~~VPeg 86 (237)
T COG0410 71 -----PPHERARLGIAYVPEG 86 (237)
T ss_pred -----CHHHHHhCCeEeCccc
Confidence 3334455679999994
No 46
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=1.7e-17 Score=136.33 Aligned_cols=85 Identities=18% Similarity=0.186 Sum_probs=70.8
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCccc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNR 147 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~ 147 (176)
.+++++++.+. |+...+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|+++...
T Consensus 2 ~~l~~~~l~~~------~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~~~~~--- 70 (241)
T PRK10895 2 ATLTAKNLAKA------YKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNI--IIDDEDISLL--- 70 (241)
T ss_pred ceEEEeCcEEE------eCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE--EECCEECCCC---
Confidence 46778888777 55567999999999999999999999999999999999998 799999 9999988532
Q ss_pred CcccChhhHHHhhcceEEecccc
Q 030515 148 DLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 148 d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
......+++++|++|++
T Consensus 71 ------~~~~~~~~~i~~~~q~~ 87 (241)
T PRK10895 71 ------PLHARARRGIGYLPQEA 87 (241)
T ss_pred ------CHHHHHHhCeEEeccCC
Confidence 12223456799999986
No 47
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.73 E-value=1.8e-17 Score=138.88 Aligned_cols=87 Identities=23% Similarity=0.273 Sum_probs=72.5
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCccc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNR 147 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~ 147 (176)
.+++++++.+. |+...+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|+++...
T Consensus 6 ~~l~~~~l~~~------~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~i~~~--- 74 (269)
T PRK11831 6 NLVDMRGVSFT------RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI--LFDGENIPAM--- 74 (269)
T ss_pred ceEEEeCeEEE------ECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE--EECCEEcccc---
Confidence 35778888776 55567999999999999999999999999999999999999 799999 9999988542
Q ss_pred CcccChhhHHHhhcceEEecccc
Q 030515 148 DLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 148 d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
+.......+++++|++|++
T Consensus 75 ----~~~~~~~~~~~i~~v~q~~ 93 (269)
T PRK11831 75 ----SRSRLYTVRKRMSMLFQSG 93 (269)
T ss_pred ----ChhhHHHHhhcEEEEeccc
Confidence 2233444566799999985
No 48
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.73 E-value=1.5e-17 Score=147.72 Aligned_cols=85 Identities=22% Similarity=0.282 Sum_probs=73.4
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCccc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNR 147 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~ 147 (176)
.+++++++.+. |+.+.+++++||++++||+++|+||||||||||+|+|+|++ |++|+| .++|+++...
T Consensus 2 ~~L~~~nls~~------y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I--~l~G~~i~~~--- 70 (402)
T PRK09536 2 PMIDVSDLSVE------FGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTV--LVAGDDVEAL--- 70 (402)
T ss_pred ceEEEeeEEEE------ECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEE--EECCEEcCcC---
Confidence 35777777777 66778999999999999999999999999999999999999 799999 9999998642
Q ss_pred CcccChhhHHHhhcceEEeccccc
Q 030515 148 DLSFKAEDRVENIRRIGSVFVLSI 171 (176)
Q Consensus 148 d~~~~~~~~~~~rrrig~V~Q~f~ 171 (176)
...+++++||+|+|...
T Consensus 71 -------~~~~~~~~ig~v~q~~~ 87 (402)
T PRK09536 71 -------SARAASRRVASVPQDTS 87 (402)
T ss_pred -------CHHHHhcceEEEccCCC
Confidence 34556778999999863
No 49
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.73 E-value=1.7e-17 Score=133.59 Aligned_cols=83 Identities=23% Similarity=0.251 Sum_probs=67.9
Q ss_pred eccceeeeccccccC-cccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcc
Q 030515 73 NSTVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLS 150 (176)
Q Consensus 73 ~~~~~~~~~~~~~~~-~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~ 150 (176)
++++.+. |+ ...+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|+++...
T Consensus 3 ~~~l~~~------~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~i~~~------ 68 (214)
T cd03292 3 FINVTKT------YPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI--RVNGQDVSDL------ 68 (214)
T ss_pred EEEEEEE------eCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE--EECCEEcccC------
Confidence 4455555 43 257999999999999999999999999999999999998 799999 9999988542
Q ss_pred cChhhHHHhhcceEEecccc
Q 030515 151 FKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 151 ~~~~~~~~~rrrig~V~Q~f 170 (176)
+..+....+++++||+|.+
T Consensus 69 -~~~~~~~~~~~i~~v~q~~ 87 (214)
T cd03292 69 -RGRAIPYLRRKIGVVFQDF 87 (214)
T ss_pred -CHHHHHHHHHheEEEecCc
Confidence 2334445667899999986
No 50
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.72 E-value=1.8e-17 Score=134.25 Aligned_cols=81 Identities=19% Similarity=0.147 Sum_probs=66.1
Q ss_pred eccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCccc
Q 030515 73 NSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSF 151 (176)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~ 151 (176)
++++.+. |+...+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|+++...
T Consensus 3 ~~~l~~~------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i--~~~g~~~~~~------- 67 (222)
T cd03224 3 VENLNAG------YGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSI--RFDGRDITGL------- 67 (222)
T ss_pred EeeEEee------cCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceE--EECCEEcCCC-------
Confidence 4455554 55667999999999999999999999999999999999999 799999 9999987542
Q ss_pred ChhhHHHhhcceEEecccc
Q 030515 152 KAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 152 ~~~~~~~~rrrig~V~Q~f 170 (176)
+ .....+++++|++|++
T Consensus 68 ~--~~~~~~~~i~~~~q~~ 84 (222)
T cd03224 68 P--PHERARAGIGYVPEGR 84 (222)
T ss_pred C--HHHHHhcCeEEecccc
Confidence 1 1112345799999986
No 51
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.72 E-value=1.6e-17 Score=141.77 Aligned_cols=83 Identities=22% Similarity=0.248 Sum_probs=73.4
Q ss_pred EEEeccceeeeccccccC-cccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCccc
Q 030515 70 LCQNSTVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNR 147 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~-~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~ 147 (176)
.++++++.+. |+ .+.+|+++||++++|++++|+||||||||||+|+|+|++ |++|+| .++|.++..
T Consensus 4 ~i~~~~l~k~------~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i--~i~G~~~~~---- 71 (293)
T COG1131 4 VIEVRNLTKK------YGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI--LVLGYDVVK---- 71 (293)
T ss_pred eeeecceEEE------eCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEE--EEcCEeCcc----
Confidence 3566777777 77 689999999999999999999999999999999999999 899999 999998853
Q ss_pred CcccChhhHHHhhcceEEeccccc
Q 030515 148 DLSFKAEDRVENIRRIGSVFVLSI 171 (176)
Q Consensus 148 d~~~~~~~~~~~rrrig~V~Q~f~ 171 (176)
+..+.+++|||++|.+.
T Consensus 72 -------~~~~~~~~igy~~~~~~ 88 (293)
T COG1131 72 -------EPAKVRRRIGYVPQEPS 88 (293)
T ss_pred -------CHHHHHhheEEEccCCC
Confidence 35677788999999874
No 52
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=1.8e-17 Score=136.68 Aligned_cols=84 Identities=26% Similarity=0.334 Sum_probs=70.3
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCccc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNR 147 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~ 147 (176)
..++++++.+. |+...+++++||++.+|++++|+|+||||||||+++|+|++ |++|+| .++|+++...
T Consensus 2 ~~l~~~~l~~~------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~i~~~--- 70 (241)
T PRK14250 2 NEIEFKEVSYS------SFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSI--LIDGVDIKTI--- 70 (241)
T ss_pred ceEEEEeEEEE------eCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE--EECCEEhhhc---
Confidence 34667777766 55567999999999999999999999999999999999998 799999 9999988532
Q ss_pred CcccChhhHHHhhcceEEecccc
Q 030515 148 DLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 148 d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
...+.+++++|++|++
T Consensus 71 -------~~~~~~~~i~~~~q~~ 86 (241)
T PRK14250 71 -------DVIDLRRKIGMVFQQP 86 (241)
T ss_pred -------ChHHhhhcEEEEecCc
Confidence 2334556799999986
No 53
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.72 E-value=1.2e-17 Score=147.08 Aligned_cols=84 Identities=23% Similarity=0.303 Sum_probs=71.6
Q ss_pred CcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcc
Q 030515 68 NNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLN 146 (176)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~ 146 (176)
..+++++++.+. |+...+++++||++++||+++|+||||||||||+++|+|++ |++|+| .++|+++...
T Consensus 12 ~~~L~l~~l~~~------~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I--~~~g~~i~~~-- 81 (375)
T PRK09452 12 SPLVELRGISKS------FDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI--MLDGQDITHV-- 81 (375)
T ss_pred CceEEEEEEEEE------ECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE--EECCEECCCC--
Confidence 446788888887 55667999999999999999999999999999999999999 799999 9999998542
Q ss_pred cCcccChhhHHHhhcceEEeccccc
Q 030515 147 RDLSFKAEDRVENIRRIGSVFVLSI 171 (176)
Q Consensus 147 ~d~~~~~~~~~~~rrrig~V~Q~f~ 171 (176)
. ..+|+|+||||+++
T Consensus 82 -----~-----~~~r~ig~vfQ~~~ 96 (375)
T PRK09452 82 -----P-----AENRHVNTVFQSYA 96 (375)
T ss_pred -----C-----HHHCCEEEEecCcc
Confidence 1 12378999999873
No 54
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.72 E-value=1.9e-17 Score=133.28 Aligned_cols=82 Identities=29% Similarity=0.300 Sum_probs=67.5
Q ss_pred eccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCccc
Q 030515 73 NSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSF 151 (176)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~ 151 (176)
++++.+. |+...+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|+++..
T Consensus 3 ~~~l~~~------~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~~~~-------- 66 (213)
T cd03262 3 IKNLHKS------FGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTI--IIDGLKLTD-------- 66 (213)
T ss_pred EEEEEEE------ECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE--EECCEECCc--------
Confidence 4455555 55567999999999999999999999999999999999999 799999 999998742
Q ss_pred ChhhHHHhhcceEEecccc
Q 030515 152 KAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 152 ~~~~~~~~rrrig~V~Q~f 170 (176)
...+....+++++|++|++
T Consensus 67 ~~~~~~~~~~~i~~~~q~~ 85 (213)
T cd03262 67 DKKNINELRQKVGMVFQQF 85 (213)
T ss_pred cchhHHHHHhcceEEeccc
Confidence 1123445567899999986
No 55
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=1.5e-17 Score=139.46 Aligned_cols=84 Identities=20% Similarity=0.150 Sum_probs=69.4
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
++++++.+. |+...+++++||++++|++++|+|+||||||||+++|+|++ |++|+| .++|+++..
T Consensus 2 l~~~~l~~~------~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~i~~------ 67 (271)
T PRK13638 2 LATSDLWFR------YQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAV--LWQGKPLDY------ 67 (271)
T ss_pred eEEEEEEEE------cCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEE--EECCEEccc------
Confidence 556666666 55567999999999999999999999999999999999999 799999 999998842
Q ss_pred ccChhhHHHhhcceEEecccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f 170 (176)
........+++|+||+|++
T Consensus 68 --~~~~~~~~~~~i~~v~q~~ 86 (271)
T PRK13638 68 --SKRGLLALRQQVATVFQDP 86 (271)
T ss_pred --ccCCHHHHHhheEEEeeCh
Confidence 1123344567899999985
No 56
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.72 E-value=2.2e-17 Score=133.96 Aligned_cols=85 Identities=28% Similarity=0.255 Sum_probs=68.6
Q ss_pred EEeccceeeeccccccCcc----cceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCc
Q 030515 71 CQNSTVAKSTNILWHKNSV----DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGL 145 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~----~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~ 145 (176)
++++++.+. |+.. .+++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|+++...
T Consensus 2 l~~~~v~~~------~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~~~~~- 72 (228)
T cd03257 2 LEVKNLSVS------FPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSI--IFDGKDLLKL- 72 (228)
T ss_pred eEEEeeeEe------ccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE--EECCEEcccc-
Confidence 455666666 4332 6899999999999999999999999999999999999 799999 9999988542
Q ss_pred ccCcccChhhHHHhhcceEEecccc
Q 030515 146 NRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 146 ~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
+.......+++++|++|+.
T Consensus 73 ------~~~~~~~~~~~i~~~~q~~ 91 (228)
T cd03257 73 ------SRRLRKIRRKEIQMVFQDP 91 (228)
T ss_pred ------chhhHHHhhccEEEEecCc
Confidence 1112344567899999986
No 57
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.72 E-value=2.6e-17 Score=133.35 Aligned_cols=89 Identities=22% Similarity=0.272 Sum_probs=68.5
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
++++++.+.|.-. .+...+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|+++...
T Consensus 2 l~~~~v~~~~~~~--~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i--~~~g~~~~~~----- 72 (221)
T TIGR02211 2 LKCENLGKRYQEG--KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEV--LFNGQSLSKL----- 72 (221)
T ss_pred EEEEeeeEEccCC--CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE--EECCEEhhhc-----
Confidence 4456666663210 01246999999999999999999999999999999999998 799999 9999988542
Q ss_pred ccChhhHHHhh-cceEEecccc
Q 030515 150 SFKAEDRVENI-RRIGSVFVLS 170 (176)
Q Consensus 150 ~~~~~~~~~~r-rrig~V~Q~f 170 (176)
+..+....+ ++++||+|++
T Consensus 73 --~~~~~~~~~~~~i~~v~q~~ 92 (221)
T TIGR02211 73 --SSNERAKLRNKKLGFIYQFH 92 (221)
T ss_pred --CHhHHHHHHHhcEEEEeccc
Confidence 223333344 5799999985
No 58
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=2.5e-17 Score=134.87 Aligned_cols=76 Identities=25% Similarity=0.297 Sum_probs=64.2
Q ss_pred cCc-ccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcce
Q 030515 86 KNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRI 163 (176)
Q Consensus 86 ~~~-~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrri 163 (176)
|+. ..+++++||++.+|++++|+|+||||||||+++|+|++ |++|++ .++|+++... ...+....++++
T Consensus 10 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i--~~~g~~~~~~-------~~~~~~~~~~~i 80 (241)
T cd03256 10 YPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV--LIDGTDINKL-------KGKALRQLRRQI 80 (241)
T ss_pred cCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceE--EECCEecccc-------CHhHHHHHHhcc
Confidence 554 67999999999999999999999999999999999999 799999 9999988542 222244556789
Q ss_pred EEecccc
Q 030515 164 GSVFVLS 170 (176)
Q Consensus 164 g~V~Q~f 170 (176)
+|++|++
T Consensus 81 ~~~~q~~ 87 (241)
T cd03256 81 GMIFQQF 87 (241)
T ss_pred EEEcccC
Confidence 9999986
No 59
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=2.7e-17 Score=139.36 Aligned_cols=90 Identities=23% Similarity=0.232 Sum_probs=70.3
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
++++++.+.|.-.. .....+++++||++++||+++|+|+||||||||+++|+|++ |++|+| .++|+++...
T Consensus 3 l~~~~l~~~y~~~~-~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i--~~~g~~~~~~----- 74 (287)
T PRK13637 3 IKIENLTHIYMEGT-PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKI--IIDGVDITDK----- 74 (287)
T ss_pred EEEEEEEEECCCCC-ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEE--EECCEECCCc-----
Confidence 56777777742110 01246999999999999999999999999999999999999 799999 9999988531
Q ss_pred ccChhhHHHhhcceEEeccccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLSI 171 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f~ 171 (176)
+ ......+++||||||++.
T Consensus 75 --~-~~~~~~~~~ig~v~q~~~ 93 (287)
T PRK13637 75 --K-VKLSDIRKKVGLVFQYPE 93 (287)
T ss_pred --C-ccHHHHhhceEEEecCch
Confidence 1 123355678999999863
No 60
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.72 E-value=1.7e-17 Score=151.02 Aligned_cols=95 Identities=27% Similarity=0.277 Sum_probs=79.8
Q ss_pred CCcEEEeccceeeecccc-----ccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCee
Q 030515 67 GNNLCQNSTVAKSTNILW-----HKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDN 140 (176)
Q Consensus 67 g~~~~~~~~~~~~~~~~~-----~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~ 140 (176)
+.++++++++.+.|.... ..+.+.+++++||++.+||+++|+|+||||||||+|+|.|++ |+.|.+ .++|++
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i--~~~g~~ 354 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSI--IFDGQD 354 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE--EEeCcc
Confidence 456788999999987631 134678999999999999999999999999999999999999 899999 999988
Q ss_pred ccCCcccCcccChhhHHHhhcceEEeccccc
Q 030515 141 CRHGLNRDLSFKAEDRVENIRRIGSVFVLSI 171 (176)
Q Consensus 141 v~~~~~~d~~~~~~~~~~~rrrig~V~Q~f~ 171 (176)
..+ +..+...+|+++.||||++-
T Consensus 355 -~~~-------~~~~~~~~r~~~QmvFQdp~ 377 (539)
T COG1123 355 -LDL-------TGGELRRLRRRIQMVFQDPY 377 (539)
T ss_pred -ccc-------ccchhhhhhhheEEEEeCcc
Confidence 322 34566778889999999863
No 61
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.72 E-value=1.6e-17 Score=145.16 Aligned_cols=80 Identities=23% Similarity=0.264 Sum_probs=68.6
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
++++++.+. |+...+++++||++++||+++|+||||||||||+++|+|++ |++|+| .++|+++...
T Consensus 3 L~i~~l~~~------~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I--~i~g~~i~~~----- 69 (353)
T PRK10851 3 IEIANIKKS------FGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHI--RFHGTDVSRL----- 69 (353)
T ss_pred EEEEEEEEE------eCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE--EECCEECCCC-----
Confidence 567777777 56668999999999999999999999999999999999999 799999 9999998531
Q ss_pred ccChhhHHHhhcceEEecccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f 170 (176)
. ..+|+|+||||++
T Consensus 70 --~-----~~~r~i~~v~Q~~ 83 (353)
T PRK10851 70 --H-----ARDRKVGFVFQHY 83 (353)
T ss_pred --C-----HHHCCEEEEecCc
Confidence 1 1246799999986
No 62
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.71 E-value=3.3e-17 Score=133.79 Aligned_cols=83 Identities=20% Similarity=0.197 Sum_probs=70.2
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
+++++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|+++...
T Consensus 7 ~i~~~~l~~~------~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~~~~~---- 74 (225)
T PRK10247 7 LLQLQNVGYL------AGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL--LFEGEDISTL---- 74 (225)
T ss_pred eEEEeccEEe------eCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeE--EECCEEcCcC----
Confidence 5777777776 55567999999999999999999999999999999999998 799999 9999887542
Q ss_pred cccChhhHHHhhcceEEecccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f 170 (176)
...+.+++++|+||++
T Consensus 75 ------~~~~~~~~i~~~~q~~ 90 (225)
T PRK10247 75 ------KPEIYRQQVSYCAQTP 90 (225)
T ss_pred ------CHHHHHhccEEEeccc
Confidence 2234556899999985
No 63
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=1.7e-17 Score=146.18 Aligned_cols=86 Identities=30% Similarity=0.319 Sum_probs=72.8
Q ss_pred CcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcc
Q 030515 68 NNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLN 146 (176)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~ 146 (176)
+.+++++++.+. |+...+++++||++++||+++|+||||||||||+|+|+|++ |++|+| +++|+++...
T Consensus 17 ~~~l~l~~v~~~------~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I--~i~g~~i~~~-- 86 (377)
T PRK11607 17 TPLLEIRNLTKS------FDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQI--MLDGVDLSHV-- 86 (377)
T ss_pred CceEEEEeEEEE------ECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE--EECCEECCCC--
Confidence 446888888887 45567899999999999999999999999999999999999 899999 9999988532
Q ss_pred cCcccChhhHHHhhcceEEecccccccc
Q 030515 147 RDLSFKAEDRVENIRRIGSVFVLSIHLF 174 (176)
Q Consensus 147 ~d~~~~~~~~~~~rrrig~V~Q~f~~lf 174 (176)
...+|+||||||++. +|
T Consensus 87 ----------~~~~r~ig~vfQ~~~-lf 103 (377)
T PRK11607 87 ----------PPYQRPINMMFQSYA-LF 103 (377)
T ss_pred ----------CHHHCCEEEEeCCCc-cC
Confidence 123578999999874 44
No 64
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=3.4e-17 Score=134.23 Aligned_cols=86 Identities=16% Similarity=0.196 Sum_probs=71.0
Q ss_pred CcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcc
Q 030515 68 NNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLN 146 (176)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~ 146 (176)
+++++++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|+++...
T Consensus 3 ~~~l~~~~l~~~------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i--~~~g~~~~~~-- 72 (237)
T PRK11614 3 KVMLSFDKVSAH------YGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRI--VFDGKDITDW-- 72 (237)
T ss_pred ccEEEEEeEEEe------eCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceE--EECCEecCCC--
Confidence 346778887777 55567999999999999999999999999999999999999 799999 9999987532
Q ss_pred cCcccChhhHHHhhcceEEecccc
Q 030515 147 RDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 147 ~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
......+++++|++|++
T Consensus 73 -------~~~~~~~~~i~~~~q~~ 89 (237)
T PRK11614 73 -------QTAKIMREAVAIVPEGR 89 (237)
T ss_pred -------CHHHHHHhCEEEeccCc
Confidence 11223456799999986
No 65
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.71 E-value=2e-17 Score=138.70 Aligned_cols=81 Identities=27% Similarity=0.268 Sum_probs=67.9
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCccc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNR 147 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~ 147 (176)
.++++++++.. |+..++|+|+||++.+|++++|+||||||||||+|+|.|++ |.+|+| .+.|+++...
T Consensus 3 ~~i~v~nl~v~------y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i--~~~g~~~~~~--- 71 (254)
T COG1121 3 PMIEVENLTVS------YGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI--KIFGKPVRKR--- 71 (254)
T ss_pred cEEEEeeeEEE------ECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceE--EEcccccccc---
Confidence 45777777777 66447999999999999999999999999999999999998 899999 9998887542
Q ss_pred CcccChhhHHHhhcceEEecccc
Q 030515 148 DLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 148 d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
. -+.+||||+|..
T Consensus 72 --------~--~~~~IgYVPQ~~ 84 (254)
T COG1121 72 --------R--KRLRIGYVPQKS 84 (254)
T ss_pred --------c--cCCeEEEcCccc
Confidence 0 035799999954
No 66
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.71 E-value=2.7e-17 Score=133.02 Aligned_cols=73 Identities=32% Similarity=0.320 Sum_probs=61.4
Q ss_pred ccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHH-hhcceEEe
Q 030515 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE-NIRRIGSV 166 (176)
Q Consensus 89 ~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~-~rrrig~V 166 (176)
..+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|+++... ...+... .+++++|+
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i--~~~g~~~~~~-------~~~~~~~~~~~~i~~~ 87 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEV--RVDGTDISKL-------SEKELAAFRRRHIGFV 87 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeE--EECCEehhhc-------chhHHHHHHhhcEEEE
Confidence 57999999999999999999999999999999999999 799999 9999988542 2222223 34579999
Q ss_pred cccc
Q 030515 167 FVLS 170 (176)
Q Consensus 167 ~Q~f 170 (176)
+|.+
T Consensus 88 ~q~~ 91 (218)
T cd03255 88 FQSF 91 (218)
T ss_pred eecc
Confidence 9985
No 67
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.71 E-value=3.6e-17 Score=136.72 Aligned_cols=92 Identities=24% Similarity=0.178 Sum_probs=71.6
Q ss_pred EEEeccceeeecccc---ccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCc
Q 030515 70 LCQNSTVAKSTNILW---HKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGL 145 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~---~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~ 145 (176)
+++++++.+.|+..- ..+...+++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|+++...
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~i~~~- 78 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTV--SFRGQDLYQL- 78 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE--EECCEEcccc-
Confidence 466777777752110 012357999999999999999999999999999999999998 799999 9999988642
Q ss_pred ccCcccChhhHHHhhcceEEecccc
Q 030515 146 NRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 146 ~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
+..+....+++|+|++|.+
T Consensus 79 ------~~~~~~~~~~~i~~v~q~~ 97 (265)
T TIGR02769 79 ------DRKQRRAFRRDVQLVFQDS 97 (265)
T ss_pred ------CHHHHHHHhhceEEEecCh
Confidence 2233444566799999985
No 68
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.71 E-value=3.9e-17 Score=136.96 Aligned_cols=94 Identities=23% Similarity=0.149 Sum_probs=73.7
Q ss_pred CcEEEeccceeeecccc---ccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccC
Q 030515 68 NNLCQNSTVAKSTNILW---HKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH 143 (176)
Q Consensus 68 ~~~~~~~~~~~~~~~~~---~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~ 143 (176)
|.+++++++.+.|...- ...+..+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|+++..
T Consensus 1 ~~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i--~~~g~~~~~ 78 (268)
T PRK10419 1 MTLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNV--SWRGEPLAK 78 (268)
T ss_pred CceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE--EECCEeccc
Confidence 34677888887753100 001357999999999999999999999999999999999998 799999 999998854
Q ss_pred CcccCcccChhhHHHhhcceEEecccc
Q 030515 144 GLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 144 ~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
. +.......+++++|++|+.
T Consensus 79 ~-------~~~~~~~~~~~i~~v~q~~ 98 (268)
T PRK10419 79 L-------NRAQRKAFRRDIQMVFQDS 98 (268)
T ss_pred c-------ChhHHHHHHhcEEEEEcCh
Confidence 2 2334445667899999985
No 69
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=2.9e-17 Score=138.28 Aligned_cols=85 Identities=20% Similarity=0.211 Sum_probs=70.4
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
+++++++.+.|. +...+++++||++++||+++|+|+||||||||+++|+|++ |++|+| .++|+++..
T Consensus 4 ~l~~~~l~~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~~~~----- 71 (274)
T PRK13647 4 IIEVEDLHFRYK-----DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV--KVMGREVNA----- 71 (274)
T ss_pred eEEEEEEEEEeC-----CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEE--EECCEECCC-----
Confidence 467777777742 2456999999999999999999999999999999999999 799999 999998853
Q ss_pred cccChhhHHHhhcceEEeccccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLSI 171 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f~ 171 (176)
....+.+++|+||||++.
T Consensus 72 -----~~~~~~~~~i~~v~q~~~ 89 (274)
T PRK13647 72 -----ENEKWVRSKVGLVFQDPD 89 (274)
T ss_pred -----CCHHHHHhhEEEEecChh
Confidence 123445667999999863
No 70
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=2.9e-17 Score=138.71 Aligned_cols=86 Identities=22% Similarity=0.174 Sum_probs=70.5
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
+++++++.+.|+- ....+++++||++++||+++|+|+||||||||+++|+|++ |++|++ +++|+++...
T Consensus 5 ~l~~~~l~~~~~~----~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i--~~~g~~i~~~---- 74 (279)
T PRK13635 5 IIRVEHISFRYPD----AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI--TVGGMVLSEE---- 74 (279)
T ss_pred eEEEEEEEEEeCC----CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE--EECCEECCcC----
Confidence 5677777777421 1346999999999999999999999999999999999999 799999 9999998542
Q ss_pred cccChhhHHHhhcceEEeccccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLSI 171 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f~ 171 (176)
...+.+++|+|++|++.
T Consensus 75 ------~~~~~~~~i~~~~q~~~ 91 (279)
T PRK13635 75 ------TVWDVRRQVGMVFQNPD 91 (279)
T ss_pred ------cHHHHhhheEEEEeCHH
Confidence 23344567999999863
No 71
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.71 E-value=2.8e-17 Score=133.08 Aligned_cols=79 Identities=23% Similarity=0.261 Sum_probs=65.7
Q ss_pred eccceeeeccccccCc--ccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 73 NSTVAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 73 ~~~~~~~~~~~~~~~~--~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
++++.+. |+. ..+++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|+++..
T Consensus 3 ~~~l~~~------~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i--~~~g~~~~~------ 68 (220)
T cd03263 3 IRNLTKT------YKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA--YINGYSIRT------ 68 (220)
T ss_pred EEeeEEE------eCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE--EECCEeccc------
Confidence 4455555 544 67999999999999999999999999999999999998 799999 999988743
Q ss_pred ccChhhHHHhhcceEEecccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f 170 (176)
...+.++++++|+|++
T Consensus 69 -----~~~~~~~~i~~v~q~~ 84 (220)
T cd03263 69 -----DRKAARQSLGYCPQFD 84 (220)
T ss_pred -----chHHHhhhEEEecCcC
Confidence 1234556799999975
No 72
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.71 E-value=3.2e-17 Score=132.58 Aligned_cols=81 Identities=25% Similarity=0.245 Sum_probs=67.3
Q ss_pred EEeccceeeeccccccCcc----cceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCc
Q 030515 71 CQNSTVAKSTNILWHKNSV----DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGL 145 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~----~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~ 145 (176)
++++++.+. |+.. .+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|+++..
T Consensus 2 l~~~~v~~~------~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i--~~~g~~~~~-- 71 (218)
T cd03266 2 ITADALTKR------FRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFA--TVDGFDVVK-- 71 (218)
T ss_pred eEEEEEEEe------cCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceE--EECCEEccc--
Confidence 455666666 4443 7999999999999999999999999999999999998 799999 999998742
Q ss_pred ccCcccChhhHHHhhcceEEecccc
Q 030515 146 NRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 146 ~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
.....+++++|++|++
T Consensus 72 ---------~~~~~~~~i~~~~q~~ 87 (218)
T cd03266 72 ---------EPAEARRRLGFVSDST 87 (218)
T ss_pred ---------CHHHHHhhEEEecCCc
Confidence 1234466899999986
No 73
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.71 E-value=3e-17 Score=134.18 Aligned_cols=74 Identities=22% Similarity=0.252 Sum_probs=62.1
Q ss_pred cCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceE
Q 030515 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIG 164 (176)
Q Consensus 86 ~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig 164 (176)
|+...+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|+++... . .....+++++
T Consensus 10 ~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i--~~~g~~~~~~-------~--~~~~~~~~i~ 78 (236)
T cd03219 10 FGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSV--LFDGEDITGL-------P--PHEIARLGIG 78 (236)
T ss_pred ECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceE--EECCEECCCC-------C--HHHHHhcCEE
Confidence 55567999999999999999999999999999999999998 799999 9999988542 1 1112245699
Q ss_pred Eecccc
Q 030515 165 SVFVLS 170 (176)
Q Consensus 165 ~V~Q~f 170 (176)
|++|.+
T Consensus 79 ~v~q~~ 84 (236)
T cd03219 79 RTFQIP 84 (236)
T ss_pred EEeccc
Confidence 999986
No 74
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.71 E-value=2e-17 Score=145.14 Aligned_cols=82 Identities=23% Similarity=0.204 Sum_probs=69.6
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCccc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNR 147 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~ 147 (176)
..++++++.+. |+...+++++||++++|++++|+|+||||||||+++|+|++ |++|+| .++|+++...
T Consensus 2 ~~l~i~~l~~~------~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I--~~~g~~i~~~--- 70 (369)
T PRK11000 2 ASVTLRNVTKA------YGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDL--FIGEKRMNDV--- 70 (369)
T ss_pred CEEEEEEEEEE------eCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE--EECCEECCCC---
Confidence 35677777777 55667999999999999999999999999999999999999 899999 9999988532
Q ss_pred CcccChhhHHHhhcceEEecccc
Q 030515 148 DLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 148 d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
. . .+++|+||||++
T Consensus 71 ----~--~---~~~~i~~v~Q~~ 84 (369)
T PRK11000 71 ----P--P---AERGVGMVFQSY 84 (369)
T ss_pred ----C--H---hHCCEEEEeCCc
Confidence 1 1 236799999986
No 75
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.71 E-value=3.8e-17 Score=134.21 Aligned_cols=84 Identities=29% Similarity=0.264 Sum_probs=69.0
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
++++++.+. |+...+++++||++.+||+++|+|+||||||||+++|+|++ |++|++ +++|.++...
T Consensus 2 l~~~~l~~~------~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~~~~~----- 68 (240)
T PRK09493 2 IEFKNVSKH------FGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL--IVDGLKVNDP----- 68 (240)
T ss_pred EEEEeEEEE------ECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EECCEECCcC-----
Confidence 456666666 55567999999999999999999999999999999999998 799999 9999988531
Q ss_pred ccChhhHHHhhcceEEecccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f 170 (176)
.......+++++|++|.+
T Consensus 69 ---~~~~~~~~~~i~~~~q~~ 86 (240)
T PRK09493 69 ---KVDERLIRQEAGMVFQQF 86 (240)
T ss_pred ---ChhHHHHhhceEEEeccc
Confidence 122334556799999986
No 76
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=3.9e-17 Score=137.75 Aligned_cols=91 Identities=25% Similarity=0.236 Sum_probs=72.1
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
+++++++.+.|.-....+.+.+++++||++++||+++|+|+||||||||+++|.|++ |++|+| .++|+++...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i--~i~g~~i~~~---- 77 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKV--YVDGLDTSDE---- 77 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE--EECCEecccc----
Confidence 577888888753211112356999999999999999999999999999999999999 799999 9999987531
Q ss_pred cccChhhHHHhhcceEEeccccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLSI 171 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f~ 171 (176)
....+.+++++|+||++.
T Consensus 78 -----~~~~~~~~~i~~v~q~~~ 95 (280)
T PRK13633 78 -----ENLWDIRNKAGMVFQNPD 95 (280)
T ss_pred -----ccHHHHhhheEEEecChh
Confidence 123445678999999863
No 77
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.71 E-value=3.3e-17 Score=133.59 Aligned_cols=81 Identities=23% Similarity=0.147 Sum_probs=66.3
Q ss_pred eccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCccc
Q 030515 73 NSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSF 151 (176)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~ 151 (176)
++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|+++...
T Consensus 3 ~~~l~~~------~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~~~~~------- 67 (230)
T TIGR03410 3 VSNLNVY------YGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSI--RLDGEDITKL------- 67 (230)
T ss_pred EEeEEEE------eCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE--EECCEECCCC-------
Confidence 4455555 55567999999999999999999999999999999999999 799999 9999988542
Q ss_pred ChhhHHHhhcceEEecccc
Q 030515 152 KAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 152 ~~~~~~~~rrrig~V~Q~f 170 (176)
+ .....+++++|++|++
T Consensus 68 ~--~~~~~~~~i~~~~q~~ 84 (230)
T TIGR03410 68 P--PHERARAGIAYVPQGR 84 (230)
T ss_pred C--HHHHHHhCeEEeccCC
Confidence 1 1122346799999986
No 78
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.71 E-value=2.6e-17 Score=130.83 Aligned_cols=74 Identities=26% Similarity=0.382 Sum_probs=63.0
Q ss_pred CcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceEE
Q 030515 87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGS 165 (176)
Q Consensus 87 ~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig~ 165 (176)
+...+++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|+++.. ........+++++|
T Consensus 3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i--~~~g~~~~~--------~~~~~~~~~~~i~~ 72 (190)
T TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAV--LIDGEPLDY--------SRKGLLERRQRVGL 72 (190)
T ss_pred CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeE--EECCEEccc--------cccchHHHHhhEEE
Confidence 4567899999999999999999999999999999999999 799999 999998742 12234445678999
Q ss_pred ecccc
Q 030515 166 VFVLS 170 (176)
Q Consensus 166 V~Q~f 170 (176)
++|++
T Consensus 73 ~~q~~ 77 (190)
T TIGR01166 73 VFQDP 77 (190)
T ss_pred EecCh
Confidence 99986
No 79
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=3.8e-17 Score=138.29 Aligned_cols=92 Identities=23% Similarity=0.168 Sum_probs=71.5
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
++++++.+.|.-.. .....+++++||++++||+++|+|+||||||||+++|+|++ |+.|+| ++||.++....
T Consensus 3 l~~~~l~~~y~~~~-~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i--~~~g~~i~~~~---- 75 (286)
T PRK13646 3 IRFDNVSYTYQKGT-PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTV--TVDDITITHKT---- 75 (286)
T ss_pred EEEEEEEEEECCCC-ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE--EECCEECcccc----
Confidence 56777777742110 01246999999999999999999999999999999999999 799999 99999885310
Q ss_pred ccChhhHHHhhcceEEeccccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLSI 171 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f~ 171 (176)
........+++||||||++.
T Consensus 76 --~~~~~~~~~~~ig~v~q~~~ 95 (286)
T PRK13646 76 --KDKYIRPVRKRIGMVFQFPE 95 (286)
T ss_pred --ccchHHHHHhheEEEecChH
Confidence 11244566778999999863
No 80
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=4e-17 Score=137.47 Aligned_cols=86 Identities=22% Similarity=0.303 Sum_probs=70.7
Q ss_pred CcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcc
Q 030515 68 NNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLN 146 (176)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~ 146 (176)
|.+++++++.+.|. +...+++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|+++..
T Consensus 1 ~~~l~~~~l~~~~~-----~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~~~~--- 70 (277)
T PRK13652 1 MHLIETRDLCYSYS-----GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV--LIRGEPITK--- 70 (277)
T ss_pred CceEEEEEEEEEeC-----CCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE--EECCEECCc---
Confidence 34577777777731 2346899999999999999999999999999999999998 899999 999998753
Q ss_pred cCcccChhhHHHhhcceEEecccc
Q 030515 147 RDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 147 ~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
......+++++||+|++
T Consensus 71 -------~~~~~~~~~i~~v~q~~ 87 (277)
T PRK13652 71 -------ENIREVRKFVGLVFQNP 87 (277)
T ss_pred -------CCHHHHHhheEEEecCc
Confidence 12334567899999986
No 81
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=3.4e-17 Score=138.11 Aligned_cols=87 Identities=23% Similarity=0.235 Sum_probs=70.3
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
+++++++.+.|.-. +...+++++||++++||+++|+|+||||||||+++|+|++ |++|++ +++|.++..
T Consensus 4 ~l~~~~l~~~~~~~---~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~i~~----- 73 (279)
T PRK13650 4 IIEVKNLTFKYKED---QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI--IIDGDLLTE----- 73 (279)
T ss_pred eEEEEeEEEEcCCC---CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE--EECCEECCc-----
Confidence 46677777774210 1235899999999999999999999999999999999999 899999 999998853
Q ss_pred cccChhhHHHhhcceEEeccccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLSI 171 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f~ 171 (176)
......+++++||||++.
T Consensus 74 -----~~~~~~~~~i~~v~q~~~ 91 (279)
T PRK13650 74 -----ENVWDIRHKIGMVFQNPD 91 (279)
T ss_pred -----CcHHHHHhhceEEEcChH
Confidence 133345678999999863
No 82
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.71 E-value=6.5e-17 Score=131.72 Aligned_cols=91 Identities=26% Similarity=0.286 Sum_probs=70.5
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCccc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNR 147 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~ 147 (176)
.+++++++.+.|+-. .....+++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|+++...
T Consensus 5 ~~l~~~~l~~~~~~~--~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i--~~~g~~~~~~--- 77 (228)
T PRK10584 5 NIVEVHHLKKSVGQG--EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEV--SLVGQPLHQM--- 77 (228)
T ss_pred ceEEEeeeEEEccCC--CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeE--EECCEEcccC---
Confidence 357777877764210 00135899999999999999999999999999999999998 799999 9999988542
Q ss_pred CcccChhhHHHhh-cceEEecccc
Q 030515 148 DLSFKAEDRVENI-RRIGSVFVLS 170 (176)
Q Consensus 148 d~~~~~~~~~~~r-rrig~V~Q~f 170 (176)
+..+..+.+ ++++|++|.+
T Consensus 78 ----~~~~~~~~~~~~i~~~~q~~ 97 (228)
T PRK10584 78 ----DEEARAKLRAKHVGFVFQSF 97 (228)
T ss_pred ----CHHHHHHHHhheEEEEEccc
Confidence 223333344 5799999986
No 83
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.71 E-value=3.8e-17 Score=139.31 Aligned_cols=82 Identities=23% Similarity=0.186 Sum_probs=70.1
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
+++++++.+. |+...+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|+++..
T Consensus 4 ~i~~~~l~~~------~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i--~~~g~~~~~----- 70 (303)
T TIGR01288 4 AIDLVGVSKS------YGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI--TVLGEPVPS----- 70 (303)
T ss_pred EEEEEeEEEE------eCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EECCEECcc-----
Confidence 4677777777 56668999999999999999999999999999999999998 799999 999998743
Q ss_pred cccChhhHHHhhcceEEecccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f 170 (176)
...+.+++++|++|++
T Consensus 71 ------~~~~~~~~i~~v~q~~ 86 (303)
T TIGR01288 71 ------RARLARVAIGVVPQFD 86 (303)
T ss_pred ------cHHHHhhcEEEEeccc
Confidence 1234567899999986
No 84
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=3.5e-17 Score=132.80 Aligned_cols=80 Identities=23% Similarity=0.297 Sum_probs=66.3
Q ss_pred EeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcc
Q 030515 72 QNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLS 150 (176)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~ 150 (176)
+++++.+. |+...+++++||++.+||+++|+|+||||||||+++|+|++ |++|++ .++|.++..
T Consensus 2 ~~~~~~~~------~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i--~~~g~~~~~------- 66 (220)
T cd03265 2 EVENLVKK------YGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRA--TVAGHDVVR------- 66 (220)
T ss_pred EEEEEEEE------ECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EECCEecCc-------
Confidence 34555555 55667999999999999999999999999999999999998 799999 999988742
Q ss_pred cChhhHHHhhcceEEecccc
Q 030515 151 FKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 151 ~~~~~~~~~rrrig~V~Q~f 170 (176)
...+.+++++|++|++
T Consensus 67 ----~~~~~~~~i~~~~q~~ 82 (220)
T cd03265 67 ----EPREVRRRIGIVFQDL 82 (220)
T ss_pred ----ChHHHhhcEEEecCCc
Confidence 1123456799999986
No 85
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.71 E-value=3e-17 Score=132.07 Aligned_cols=73 Identities=32% Similarity=0.363 Sum_probs=62.7
Q ss_pred cCc--ccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcc
Q 030515 86 KNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRR 162 (176)
Q Consensus 86 ~~~--~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrr 162 (176)
|+. ..+++++||++++|++++|+|+||||||||+++|.|++ |++|++ .++|+++... .....+++
T Consensus 9 ~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~~~~~----------~~~~~~~~ 76 (211)
T cd03225 9 YPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEV--LVDGKDLTKL----------SLKELRRK 76 (211)
T ss_pred cCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceE--EECCEEcccC----------CHHHHHhh
Confidence 554 67999999999999999999999999999999999998 799999 9999987531 23345567
Q ss_pred eEEecccc
Q 030515 163 IGSVFVLS 170 (176)
Q Consensus 163 ig~V~Q~f 170 (176)
|+|++|.+
T Consensus 77 i~~~~q~~ 84 (211)
T cd03225 77 VGLVFQNP 84 (211)
T ss_pred ceEEecCh
Confidence 99999985
No 86
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.70 E-value=4e-17 Score=133.11 Aligned_cols=81 Identities=19% Similarity=0.203 Sum_probs=65.6
Q ss_pred eccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCccc
Q 030515 73 NSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSF 151 (176)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~ 151 (176)
++++.+. |+...+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|+++...
T Consensus 3 ~~~l~~~------~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~~~~~------- 67 (232)
T cd03218 3 AENLSKR------YGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKI--LLDGQDITKL------- 67 (232)
T ss_pred EEEEEEE------eCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE--EECCEecccC-------
Confidence 4455555 55667999999999999999999999999999999999999 799999 9999987532
Q ss_pred ChhhHHHhhcceEEecccc
Q 030515 152 KAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 152 ~~~~~~~~rrrig~V~Q~f 170 (176)
. .....+++++|++|++
T Consensus 68 ~--~~~~~~~~i~~~~q~~ 84 (232)
T cd03218 68 P--MHKRARLGIGYLPQEA 84 (232)
T ss_pred C--HhHHHhccEEEecCCc
Confidence 1 1112245699999986
No 87
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.70 E-value=4.1e-17 Score=130.94 Aligned_cols=81 Identities=15% Similarity=0.184 Sum_probs=68.0
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
++++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|++ |++|++ +++|+++..
T Consensus 2 l~~~~l~~~------~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v--~~~g~~~~~------ 67 (200)
T PRK13540 2 LDVIELDFD------YHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEI--LFERQSIKK------ 67 (200)
T ss_pred EEEEEEEEE------eCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeE--EECCCcccc------
Confidence 456666666 55567999999999999999999999999999999999998 799999 999988742
Q ss_pred ccChhhHHHhhcceEEecccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f 170 (176)
.....+++++|++|.+
T Consensus 68 -----~~~~~~~~i~~~~q~~ 83 (200)
T PRK13540 68 -----DLCTYQKQLCFVGHRS 83 (200)
T ss_pred -----CHHHHHhheEEecccc
Confidence 2234567899999975
No 88
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=5.3e-17 Score=134.11 Aligned_cols=85 Identities=28% Similarity=0.313 Sum_probs=70.2
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-c-----CCCeEEEEECCeecc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-H-----WRGKLTYILDGDNCR 142 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p-----~~G~i~~~ldG~~v~ 142 (176)
.+++++++.+. |+...+++++||++++|++++|+|+||||||||+++|.|++ | ++|+| .++|.++.
T Consensus 2 ~~l~~~~l~~~------~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i--~~~g~~i~ 73 (250)
T PRK14247 2 NKIEIRDLKVS------FGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEV--YLDGQDIF 73 (250)
T ss_pred ceEEEEeeEEE------ECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEE--EECCEECC
Confidence 45777777776 55567999999999999999999999999999999999998 3 58999 99999885
Q ss_pred CCcccCcccChhhHHHhhcceEEeccccc
Q 030515 143 HGLNRDLSFKAEDRVENIRRIGSVFVLSI 171 (176)
Q Consensus 143 ~~~~~d~~~~~~~~~~~rrrig~V~Q~f~ 171 (176)
.. .....+++|+|++|++.
T Consensus 74 ~~----------~~~~~~~~i~~v~q~~~ 92 (250)
T PRK14247 74 KM----------DVIELRRRVQMVFQIPN 92 (250)
T ss_pred cC----------CHHHHhccEEEEeccCc
Confidence 42 23345567999999863
No 89
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=2.9e-17 Score=132.53 Aligned_cols=78 Identities=27% Similarity=0.310 Sum_probs=65.0
Q ss_pred eccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCccc
Q 030515 73 NSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSF 151 (176)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~ 151 (176)
++++.+. |+...+++++||++++|++++|+|+||||||||+++|.|++ |++|++ .++|+++...
T Consensus 3 ~~~l~~~------~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i--~~~g~~~~~~------- 67 (213)
T cd03259 3 LKGLSKT------YGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI--LIDGRDVTGV------- 67 (213)
T ss_pred eeeeEEE------eCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEE--EECCEEcCcC-------
Confidence 4455555 55567999999999999999999999999999999999998 799999 9999987531
Q ss_pred ChhhHHHhhcceEEecccc
Q 030515 152 KAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 152 ~~~~~~~~rrrig~V~Q~f 170 (176)
. ..+++++|++|.+
T Consensus 68 ~-----~~~~~i~~v~q~~ 81 (213)
T cd03259 68 P-----PERRNIGMVFQDY 81 (213)
T ss_pred c-----hhhccEEEEcCch
Confidence 1 1245799999986
No 90
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=5.5e-17 Score=137.65 Aligned_cols=92 Identities=21% Similarity=0.161 Sum_probs=71.3
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
++++++.+.|.... .....+++++||++++||+++|+|+||||||||+++|+|++ |++|+| .++|+++....
T Consensus 3 l~~~~l~~~y~~~~-~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~i~~~~---- 75 (290)
T PRK13634 3 ITFQKVEHRYQYKT-PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTV--TIGERVITAGK---- 75 (290)
T ss_pred EEEEEEEEEECCCC-cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE--EECCEECcccc----
Confidence 56777777752110 01246999999999999999999999999999999999999 799999 99999885310
Q ss_pred ccChhhHHHhhcceEEeccccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLSI 171 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f~ 171 (176)
........+++|+||||++.
T Consensus 76 --~~~~~~~~~~~ig~v~q~~~ 95 (290)
T PRK13634 76 --KNKKLKPLRKKVGIVFQFPE 95 (290)
T ss_pred --ccchHHHHHhhEEEEeeCch
Confidence 12344556678999999863
No 91
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.70 E-value=4.5e-17 Score=134.45 Aligned_cols=84 Identities=29% Similarity=0.293 Sum_probs=68.4
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cC-----CCeEEEEECCeeccCC
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HW-----RGKLTYILDGDNCRHG 144 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~-----~G~i~~~ldG~~v~~~ 144 (176)
++++++.+. |+...+++++||++++||+++|+|+||||||||+++|.|++ |+ +|++ .++|+++...
T Consensus 2 l~~~~l~~~------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i--~~~g~~~~~~ 73 (247)
T TIGR00972 2 IEIENLNLF------YGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKV--LFDGQDIYDK 73 (247)
T ss_pred EEEEEEEEE------ECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEE--EECCEEcccc
Confidence 456666666 55567999999999999999999999999999999999999 67 9999 9999987531
Q ss_pred cccCcccChhhHHHhhcceEEecccc
Q 030515 145 LNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 145 ~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
.......+++++|++|++
T Consensus 74 --------~~~~~~~~~~i~~v~q~~ 91 (247)
T TIGR00972 74 --------KIDVVELRRRVGMVFQKP 91 (247)
T ss_pred --------ccchHHHHhheEEEecCc
Confidence 112334556799999985
No 92
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.70 E-value=7.1e-17 Score=133.17 Aligned_cols=91 Identities=21% Similarity=0.126 Sum_probs=70.7
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
+++++++.+. |+...+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|+++.... +
T Consensus 3 ~l~~~~l~~~------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~~~~~~--~ 72 (250)
T PRK11264 3 AIEVKNLVKK------FHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTI--RVGDITIDTAR--S 72 (250)
T ss_pred cEEEeceEEE------ECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE--EECCEEccccc--c
Confidence 5677777776 55567999999999999999999999999999999999998 799999 99999875310 0
Q ss_pred cccChhhHHHhhcceEEecccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f 170 (176)
..-...+....+++++||+|.+
T Consensus 73 ~~~~~~~~~~~~~~i~~v~q~~ 94 (250)
T PRK11264 73 LSQQKGLIRQLRQHVGFVFQNF 94 (250)
T ss_pred ccchhhHHHHhhhhEEEEecCc
Confidence 0000012344566899999986
No 93
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=6.3e-17 Score=136.75 Aligned_cols=87 Identities=22% Similarity=0.246 Sum_probs=71.6
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
+++++++.+.|. +...+++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|+++..
T Consensus 5 ~l~~~~l~~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i--~i~g~~~~~----- 72 (283)
T PRK13636 5 ILKVEELNYNYS-----DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI--LFDGKPIDY----- 72 (283)
T ss_pred eEEEEeEEEEeC-----CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEE--EECCEECCC-----
Confidence 567778777741 2457999999999999999999999999999999999999 799999 999998842
Q ss_pred cccChhhHHHhhcceEEeccccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLSI 171 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f~ 171 (176)
......+.+++++|++|++.
T Consensus 73 ---~~~~~~~~~~~ig~v~q~~~ 92 (283)
T PRK13636 73 ---SRKGLMKLRESVGMVFQDPD 92 (283)
T ss_pred ---CcchHHHHHhhEEEEecCcc
Confidence 11234456678999999863
No 94
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=5.2e-17 Score=136.72 Aligned_cols=85 Identities=28% Similarity=0.285 Sum_probs=68.9
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
++++++.+.|. +...+++++||++++||+++|+|+||||||||+++|+|++ |++|++ +++|.++...
T Consensus 2 l~~~~l~~~~~-----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~~~~~----- 69 (274)
T PRK13644 2 IRLENVSYSYP-----DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV--LVSGIDTGDF----- 69 (274)
T ss_pred EEEEEEEEEcC-----CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE--EECCEECCcc-----
Confidence 45666666631 3456999999999999999999999999999999999998 799999 9999988532
Q ss_pred ccChhhHHHhhcceEEeccccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLSI 171 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f~ 171 (176)
......+++++|++|++.
T Consensus 70 ----~~~~~~~~~i~~v~q~~~ 87 (274)
T PRK13644 70 ----SKLQGIRKLVGIVFQNPE 87 (274)
T ss_pred ----ccHHHHHhheEEEEEChh
Confidence 123345668999999863
No 95
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.70 E-value=6.8e-17 Score=133.65 Aligned_cols=86 Identities=27% Similarity=0.293 Sum_probs=70.0
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc------cCCCeEEEEECCeecc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL------HWRGKLTYILDGDNCR 142 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll------p~~G~i~~~ldG~~v~ 142 (176)
++++++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|+++.
T Consensus 5 ~~l~~~~l~~~------~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i--~~~g~~i~ 76 (253)
T PRK14242 5 PKMEARGLSFF------YGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEI--LLDGENIY 76 (253)
T ss_pred cEEEEeeeEEE------ECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEE--EECCEEcc
Confidence 45778888777 45557999999999999999999999999999999999985 368999 99999875
Q ss_pred CCcccCcccChhhHHHhhcceEEecccc
Q 030515 143 HGLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 143 ~~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
.. ..+....+++++|++|++
T Consensus 77 ~~--------~~~~~~~~~~i~~v~q~~ 96 (253)
T PRK14242 77 DP--------HVDVVELRRRVGMVFQKP 96 (253)
T ss_pred cc--------ccCHHHHhhcEEEEecCC
Confidence 31 112334566899999986
No 96
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.70 E-value=7.2e-17 Score=132.56 Aligned_cols=84 Identities=17% Similarity=0.186 Sum_probs=68.5
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
+++++++.+. |+...+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|.++...
T Consensus 2 ~i~~~~l~~~------~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i--~~~g~~~~~~---- 69 (242)
T TIGR03411 2 ILYLEGLSVS------FDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSV--LFGGTDLTGL---- 69 (242)
T ss_pred eEEEEeeEEE------cCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeE--EECCeecCCC----
Confidence 4567777766 55567999999999999999999999999999999999998 799999 9999887542
Q ss_pred cccChhhHHHhhcceEEecccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f 170 (176)
. .....+++++|++|.+
T Consensus 70 ---~--~~~~~~~~i~~~~q~~ 86 (242)
T TIGR03411 70 ---P--EHQIARAGIGRKFQKP 86 (242)
T ss_pred ---C--HHHHHhcCeeEecccc
Confidence 1 1112345699999986
No 97
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.70 E-value=4.9e-17 Score=132.38 Aligned_cols=82 Identities=28% Similarity=0.274 Sum_probs=66.8
Q ss_pred eccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc------cCCCeEEEEECCeeccCCcc
Q 030515 73 NSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL------HWRGKLTYILDGDNCRHGLN 146 (176)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll------p~~G~i~~~ldG~~v~~~~~ 146 (176)
++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|++ |.+|++ .++|+++...
T Consensus 3 ~~~l~~~------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i--~~~g~~~~~~-- 72 (227)
T cd03260 3 LRDLNVY------YGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEV--LLDGKDIYDL-- 72 (227)
T ss_pred EEEEEEE------cCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEE--EECCEEhhhc--
Confidence 4455555 56667999999999999999999999999999999999998 478999 9999987532
Q ss_pred cCcccChhhHHHhhcceEEecccc
Q 030515 147 RDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 147 ~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
+ .+....+++++|++|++
T Consensus 73 -----~-~~~~~~~~~i~~~~q~~ 90 (227)
T cd03260 73 -----D-VDVLELRRRVGMVFQKP 90 (227)
T ss_pred -----c-hHHHHHHhhEEEEecCc
Confidence 1 12344567899999986
No 98
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.70 E-value=4.5e-17 Score=130.86 Aligned_cols=70 Identities=29% Similarity=0.364 Sum_probs=61.1
Q ss_pred cCc-ccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcce
Q 030515 86 KNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRI 163 (176)
Q Consensus 86 ~~~-~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrri 163 (176)
|+. ..+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|+++.. ...++++
T Consensus 9 ~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~~~~-------------~~~~~~i 73 (205)
T cd03226 9 YKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSI--LLNGKPIKA-------------KERRKSI 73 (205)
T ss_pred eCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE--EECCEEhhh-------------HHhhcce
Confidence 554 67999999999999999999999999999999999998 799999 999988731 2345679
Q ss_pred EEecccc
Q 030515 164 GSVFVLS 170 (176)
Q Consensus 164 g~V~Q~f 170 (176)
+|++|++
T Consensus 74 ~~~~q~~ 80 (205)
T cd03226 74 GYVMQDV 80 (205)
T ss_pred EEEecCh
Confidence 9999985
No 99
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=6.5e-17 Score=127.18 Aligned_cols=79 Identities=24% Similarity=0.247 Sum_probs=65.5
Q ss_pred eccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCccc
Q 030515 73 NSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSF 151 (176)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~ 151 (176)
++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|++ |.+|++ .++|+++...
T Consensus 3 ~~~l~~~------~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i--~~~g~~~~~~------- 67 (173)
T cd03230 3 VRNLSKR------YGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI--KVLGKDIKKE------- 67 (173)
T ss_pred EEEEEEE------ECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEE--EECCEEcccc-------
Confidence 4455555 44457899999999999999999999999999999999998 799999 9999887531
Q ss_pred ChhhHHHhhcceEEecccc
Q 030515 152 KAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 152 ~~~~~~~~rrrig~V~Q~f 170 (176)
. .+.+++++|++|++
T Consensus 68 ---~-~~~~~~i~~~~q~~ 82 (173)
T cd03230 68 ---P-EEVKRRIGYLPEEP 82 (173)
T ss_pred ---h-HhhhccEEEEecCC
Confidence 1 34456799999986
No 100
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.70 E-value=6.6e-17 Score=126.37 Aligned_cols=79 Identities=27% Similarity=0.300 Sum_probs=64.7
Q ss_pred eccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCccc
Q 030515 73 NSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSF 151 (176)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~ 151 (176)
++++.+. |+..++++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|+++...
T Consensus 3 ~~~l~~~------~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v--~~~g~~~~~~------- 67 (163)
T cd03216 3 LRGITKR------FGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI--LVDGKEVSFA------- 67 (163)
T ss_pred EEEEEEE------ECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE--EECCEECCcC-------
Confidence 4455555 55557999999999999999999999999999999999999 799999 9999988542
Q ss_pred ChhhHHHhhcceEEecc
Q 030515 152 KAEDRVENIRRIGSVFV 168 (176)
Q Consensus 152 ~~~~~~~~rrrig~V~Q 168 (176)
......+++++|++|
T Consensus 68 --~~~~~~~~~i~~~~q 82 (163)
T cd03216 68 --SPRDARRAGIAMVYQ 82 (163)
T ss_pred --CHHHHHhcCeEEEEe
Confidence 112234567999998
No 101
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.70 E-value=5.4e-17 Score=130.49 Aligned_cols=79 Identities=23% Similarity=0.363 Sum_probs=65.9
Q ss_pred EeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcc
Q 030515 72 QNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLS 150 (176)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~ 150 (176)
+++++.+. |+...+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|+++..
T Consensus 2 ~~~~l~~~------~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i--~~~g~~~~~------- 66 (208)
T cd03268 2 KTNDLTKT------YGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEI--TFDGKSYQK------- 66 (208)
T ss_pred EEEEEEEE------ECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEE--EECCCcccc-------
Confidence 34555555 55567999999999999999999999999999999999998 799999 999987742
Q ss_pred cChhhHHHhhcceEEecccc
Q 030515 151 FKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 151 ~~~~~~~~~rrrig~V~Q~f 170 (176)
. .+.+++++|++|++
T Consensus 67 ---~--~~~~~~i~~~~q~~ 81 (208)
T cd03268 67 ---N--IEALRRIGALIEAP 81 (208)
T ss_pred ---h--HHHHhhEEEecCCC
Confidence 1 23456799999986
No 102
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.70 E-value=6.7e-17 Score=133.77 Aligned_cols=90 Identities=24% Similarity=0.213 Sum_probs=68.3
Q ss_pred eccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCc--ccC-
Q 030515 73 NSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGL--NRD- 148 (176)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~--~~d- 148 (176)
++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|+++...- ...
T Consensus 3 ~~~l~~~------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~i~~~~~~~~~~ 74 (252)
T TIGR03005 3 FSDVTKR------FGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQI--QVEGEQLYHMPGRNGPL 74 (252)
T ss_pred EEEEEEE------eCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EECCEEccccccccccc
Confidence 4555555 55567999999999999999999999999999999999998 799999 99999885320 000
Q ss_pred cccChhhHHHhhcceEEecccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f 170 (176)
......+....+++++|++|++
T Consensus 75 ~~~~~~~~~~~~~~i~~v~q~~ 96 (252)
T TIGR03005 75 VPADEKHLRQMRNKIGMVFQSF 96 (252)
T ss_pred cccchhHHHHHhhCeEEEecCc
Confidence 0001123345567899999986
No 103
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.70 E-value=7.2e-17 Score=137.60 Aligned_cols=81 Identities=23% Similarity=0.258 Sum_probs=69.8
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
++++++.++ |++..+++++||++++||+++|+|+||||||||+++|.|++ |++|+| .++|.++..
T Consensus 3 l~~~~l~~~------~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i--~i~g~~~~~------ 68 (301)
T TIGR03522 3 IRVSSLTKL------YGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSV--QVCGEDVLQ------ 68 (301)
T ss_pred EEEEEEEEE------ECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EECCEEccc------
Confidence 567777777 56678999999999999999999999999999999999998 899999 999998753
Q ss_pred ccChhhHHHhhcceEEecccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f 170 (176)
...+.++++||++|.+
T Consensus 69 -----~~~~~~~~ig~~~q~~ 84 (301)
T TIGR03522 69 -----NPKEVQRNIGYLPEHN 84 (301)
T ss_pred -----ChHHHHhceEEecCCC
Confidence 1234567899999985
No 104
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=7.3e-17 Score=136.81 Aligned_cols=92 Identities=22% Similarity=0.148 Sum_probs=71.1
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
++++++.+.|.-.. .....+++++||++++||+++|+|+||||||||+++|+|++ |++|++ +++|.++...
T Consensus 2 i~~~~v~~~y~~~~-~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~i~~~----- 73 (288)
T PRK13643 2 IKFEKVNYTYQPNS-PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKV--TVGDIVVSST----- 73 (288)
T ss_pred EEEEEEEEEeCCCC-cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEE--EECCEECccc-----
Confidence 56777777753110 01135899999999999999999999999999999999999 899999 9999998531
Q ss_pred ccChhhHHHhhcceEEeccccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLSI 171 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f~ 171 (176)
.......+.+++++||||++.
T Consensus 74 -~~~~~~~~~~~~ig~v~q~~~ 94 (288)
T PRK13643 74 -SKQKEIKPVRKKVGVVFQFPE 94 (288)
T ss_pred -cccccHHHHHhhEEEEecCcc
Confidence 011234556778999999863
No 105
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.69 E-value=6.1e-17 Score=129.71 Aligned_cols=76 Identities=25% Similarity=0.210 Sum_probs=63.4
Q ss_pred cCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhh-HHHhhcce
Q 030515 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAED-RVENIRRI 163 (176)
Q Consensus 86 ~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~-~~~~rrri 163 (176)
|+...+++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|+++... .... ....++++
T Consensus 8 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~~~~~-------~~~~~~~~~~~~i 78 (206)
T TIGR03608 8 FGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQV--YLNGKETPPL-------NSKKASKFRREKL 78 (206)
T ss_pred ECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEE--EECCEEcccc-------chhhHHHHHHhCe
Confidence 55667999999999999999999999999999999999999 799999 9999987532 1112 22345679
Q ss_pred EEecccc
Q 030515 164 GSVFVLS 170 (176)
Q Consensus 164 g~V~Q~f 170 (176)
+|++|.+
T Consensus 79 ~~~~q~~ 85 (206)
T TIGR03608 79 GYLFQNF 85 (206)
T ss_pred eEEecch
Confidence 9999985
No 106
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=7e-17 Score=135.49 Aligned_cols=86 Identities=24% Similarity=0.290 Sum_probs=70.9
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCccc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNR 147 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~ 147 (176)
.+++++++.+.|. .+...+++++||++++|++++|+|+||||||||+++|+|++ |++|+| .++|.++..
T Consensus 6 ~~l~~~nl~~~~~----~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I--~~~g~~i~~---- 75 (271)
T PRK13632 6 VMIKVENVSFSYP----NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI--KIDGITISK---- 75 (271)
T ss_pred eEEEEEeEEEEcC----CCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE--EECCEecCc----
Confidence 3577778777731 02457899999999999999999999999999999999999 799999 999998853
Q ss_pred CcccChhhHHHhhcceEEecccc
Q 030515 148 DLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 148 d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
......+++++|++|++
T Consensus 76 ------~~~~~~~~~i~~v~q~~ 92 (271)
T PRK13632 76 ------ENLKEIRKKIGIIFQNP 92 (271)
T ss_pred ------CCHHHHhcceEEEEeCH
Confidence 23345567899999986
No 107
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=8.4e-17 Score=133.31 Aligned_cols=86 Identities=23% Similarity=0.289 Sum_probs=70.5
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-c-----CCCeEEEEECCeecc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-H-----WRGKLTYILDGDNCR 142 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p-----~~G~i~~~ldG~~v~ 142 (176)
.+++++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|++ | ++|+| .++|+++.
T Consensus 6 ~~l~~~~l~~~------~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i--~~~g~~i~ 77 (254)
T PRK14273 6 AIIETENLNLF------YTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNV--IYEGKNIY 77 (254)
T ss_pred ceEEEeeeEEE------eCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEE--EECCEecc
Confidence 46778888777 55557999999999999999999999999999999999998 5 38999 99998874
Q ss_pred CCcccCcccChhhHHHhhcceEEecccc
Q 030515 143 HGLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 143 ~~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
.. .......+++|+|++|++
T Consensus 78 ~~--------~~~~~~~~~~i~~v~q~~ 97 (254)
T PRK14273 78 SN--------NFDILELRRKIGMVFQTP 97 (254)
T ss_pred cc--------cccHHHHhhceEEEeecc
Confidence 21 123344567899999986
No 108
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.69 E-value=8e-17 Score=134.28 Aligned_cols=83 Identities=28% Similarity=0.242 Sum_probs=69.0
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
+++++++.+. |+...+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|+++...
T Consensus 2 ~l~~~~l~~~------~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i--~~~g~~~~~~---- 69 (258)
T PRK13548 2 MLEARNLSVR------LGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEV--RLNGRPLADW---- 69 (258)
T ss_pred eEEEEeEEEE------eCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE--EECCEEcccC----
Confidence 3566677666 55567999999999999999999999999999999999998 799999 9999887532
Q ss_pred cccChhhHHHhhcceEEecccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f 170 (176)
.....+++++|++|++
T Consensus 70 ------~~~~~~~~i~~~~q~~ 85 (258)
T PRK13548 70 ------SPAELARRRAVLPQHS 85 (258)
T ss_pred ------CHHHhhhheEEEccCC
Confidence 2233456799999986
No 109
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=8.9e-17 Score=132.96 Aligned_cols=86 Identities=24% Similarity=0.261 Sum_probs=70.5
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-c-----CCCeEEEEECCeecc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-H-----WRGKLTYILDGDNCR 142 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p-----~~G~i~~~ldG~~v~ 142 (176)
++++++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|++ | ++|++ .++|+++.
T Consensus 3 ~~l~~~~l~~~------~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i--~~~g~~i~ 74 (251)
T PRK14270 3 IKMESKNLNLW------YGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEV--LLDGKNIY 74 (251)
T ss_pred cEEEEEEeEEE------ECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEE--EECCEecc
Confidence 46777777777 55567999999999999999999999999999999999987 4 68999 99999885
Q ss_pred CCcccCcccChhhHHHhhcceEEecccc
Q 030515 143 HGLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 143 ~~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
.. ..+....+++++|++|++
T Consensus 75 ~~--------~~~~~~~~~~i~~~~q~~ 94 (251)
T PRK14270 75 DK--------DVDVVELRKRVGMVFQKP 94 (251)
T ss_pred cc--------cccHHHHHhheEEEecCC
Confidence 31 123334566799999986
No 110
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=7.1e-17 Score=134.92 Aligned_cols=84 Identities=20% Similarity=0.129 Sum_probs=70.4
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCccc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNR 147 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~ 147 (176)
.+++++++.+. |+...+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|+++...
T Consensus 10 ~~l~i~~l~~~------~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i--~~~g~~~~~~--- 78 (265)
T PRK10575 10 TTFALRNVSFR------VPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEI--LLDAQPLESW--- 78 (265)
T ss_pred ceEEEeeEEEE------ECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEE--EECCEehhhC---
Confidence 35778887777 55567999999999999999999999999999999999998 799999 9999987532
Q ss_pred CcccChhhHHHhhcceEEecccc
Q 030515 148 DLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 148 d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
.....++.++|++|++
T Consensus 79 -------~~~~~~~~i~~v~q~~ 94 (265)
T PRK10575 79 -------SSKAFARKVAYLPQQL 94 (265)
T ss_pred -------CHHHHhhheEEeccCC
Confidence 2234456799999985
No 111
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=8.5e-17 Score=133.09 Aligned_cols=85 Identities=26% Similarity=0.248 Sum_probs=69.1
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cC-----CCeEEEEECCeeccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HW-----RGKLTYILDGDNCRH 143 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~-----~G~i~~~ldG~~v~~ 143 (176)
+++++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|++ |+ +|+| .++|+++..
T Consensus 4 ~l~~~~l~~~------~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i--~~~g~~i~~ 75 (253)
T PRK14267 4 AIETVNLRVY------YGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEV--RLFGRNIYS 75 (253)
T ss_pred eEEEEeEEEE------eCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEE--EECCEEccc
Confidence 5677777777 55567999999999999999999999999999999999998 53 8999 999998852
Q ss_pred CcccCcccChhhHHHhhcceEEecccc
Q 030515 144 GLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 144 ~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
. .......+++++|++|++
T Consensus 76 ~--------~~~~~~~~~~i~~~~q~~ 94 (253)
T PRK14267 76 P--------DVDPIEVRREVGMVFQYP 94 (253)
T ss_pred c--------ccChHHHhhceeEEecCC
Confidence 1 012224456799999985
No 112
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=9.1e-17 Score=134.79 Aligned_cols=87 Identities=29% Similarity=0.340 Sum_probs=70.9
Q ss_pred CcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc------cCCCeEEEEECCeec
Q 030515 68 NNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL------HWRGKLTYILDGDNC 141 (176)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll------p~~G~i~~~ldG~~v 141 (176)
..+++++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|+++
T Consensus 11 ~~~l~i~nl~~~------~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v--~~~g~~i 82 (269)
T PRK14259 11 NIIISLQNVTIS------YGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRV--LFDGTDL 82 (269)
T ss_pred CceEEEEeEEEE------ECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE--EECCEEc
Confidence 446778888777 55567999999999999999999999999999999999997 378999 8999987
Q ss_pred cCCcccCcccChhhHHHhhcceEEecccc
Q 030515 142 RHGLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 142 ~~~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
... ..+..+.+++|+|++|++
T Consensus 83 ~~~--------~~~~~~~~~~i~~v~q~~ 103 (269)
T PRK14259 83 YDP--------RVDPVEVRRRIGMVFQQP 103 (269)
T ss_pred ccc--------cCCHHHHhhceEEEccCC
Confidence 421 012334566799999986
No 113
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.69 E-value=1.3e-16 Score=126.46 Aligned_cols=81 Identities=21% Similarity=0.174 Sum_probs=67.8
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCccc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNR 147 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~ 147 (176)
.+++++++.+. | +++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|+++...
T Consensus 3 ~~l~~~~l~~~------~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~~~~~--- 67 (182)
T cd03215 3 PVLEVRGLSVK------G----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEI--TLDGKPVTRR--- 67 (182)
T ss_pred cEEEEeccEEE------e----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceE--EECCEECCcc---
Confidence 35777777776 3 799999999999999999999999999999999999 799999 9999988642
Q ss_pred CcccChhhHHHhhcceEEecccc
Q 030515 148 DLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 148 d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
......+++++|++|++
T Consensus 68 ------~~~~~~~~~i~~~~q~~ 84 (182)
T cd03215 68 ------SPRDAIRAGIAYVPEDR 84 (182)
T ss_pred ------CHHHHHhCCeEEecCCc
Confidence 11233456799999974
No 114
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1e-16 Score=134.23 Aligned_cols=86 Identities=20% Similarity=0.193 Sum_probs=70.7
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-c-----CCCeEEEEECCeecc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-H-----WRGKLTYILDGDNCR 142 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p-----~~G~i~~~ldG~~v~ 142 (176)
.+++++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|++ | ++|++ .++|+++.
T Consensus 19 ~~l~~~nl~~~------~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i--~~~g~~~~ 90 (267)
T PRK14237 19 IALSTKDLHVY------YGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQI--LYRGIDIN 90 (267)
T ss_pred eEEEEeeEEEE------ECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEE--EECCEEcc
Confidence 35778888777 55568999999999999999999999999999999999998 3 68999 99999884
Q ss_pred CCcccCcccChhhHHHhhcceEEecccc
Q 030515 143 HGLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 143 ~~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
.. ..+....++.|+||+|.+
T Consensus 91 ~~--------~~~~~~~~~~i~~v~q~~ 110 (267)
T PRK14237 91 RK--------EINVYEMRKHIGMVFQRP 110 (267)
T ss_pred cc--------cCChHHHhcceEEEecCC
Confidence 21 123444567899999986
No 115
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=1e-16 Score=138.18 Aligned_cols=102 Identities=21% Similarity=0.182 Sum_probs=75.2
Q ss_pred CCcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCc
Q 030515 67 GNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGL 145 (176)
Q Consensus 67 g~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~ 145 (176)
+..+++++++...|+-.. .....+++++||++++|++++|+|+||||||||+++|+|++ |++|+| +++|.++....
T Consensus 18 ~~~~l~~~nl~~~y~~~~-~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I--~i~g~~~~~~~ 94 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQ-ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTI--QVGDIYIGDKK 94 (320)
T ss_pred CCceEEEEeEEEEeCCCC-cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeE--EECCEEccccc
Confidence 445788888888853210 01246999999999999999999999999999999999999 799999 99998875310
Q ss_pred -ccCccc-----ChhhHHHhhcceEEeccccc
Q 030515 146 -NRDLSF-----KAEDRVENIRRIGSVFVLSI 171 (176)
Q Consensus 146 -~~d~~~-----~~~~~~~~rrrig~V~Q~f~ 171 (176)
..++.. ........+++|+||||++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~ 126 (320)
T PRK13631 95 NNHELITNPYSKKIKNFKELRRRVSMVFQFPE 126 (320)
T ss_pred ccccccccccccccchHHHHHhcEEEEEECch
Confidence 000000 00234556778999999863
No 116
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1e-16 Score=134.00 Aligned_cols=88 Identities=20% Similarity=0.235 Sum_probs=71.3
Q ss_pred CCcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc------cCCCeEEEEECCee
Q 030515 67 GNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL------HWRGKLTYILDGDN 140 (176)
Q Consensus 67 g~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll------p~~G~i~~~ldG~~ 140 (176)
+..+++++++.+. |++..+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|++
T Consensus 18 ~~~~l~~~~l~~~------~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i--~~~g~~ 89 (268)
T PRK14248 18 KEHILEVKDLSIY------YGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEI--LYEGLN 89 (268)
T ss_pred CCceEEEEEEEEE------eCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEE--EECCEE
Confidence 3446778888777 55567999999999999999999999999999999999975 378999 999998
Q ss_pred ccCCcccCcccChhhHHHhhcceEEecccc
Q 030515 141 CRHGLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 141 v~~~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
+... ..+....+++++|++|++
T Consensus 90 i~~~--------~~~~~~~~~~i~~v~q~~ 111 (268)
T PRK14248 90 ILDS--------NINVVNLRREIGMVFQKP 111 (268)
T ss_pred cccc--------cccHHHHhccEEEEecCC
Confidence 8531 122334566899999986
No 117
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1e-16 Score=133.26 Aligned_cols=88 Identities=26% Similarity=0.269 Sum_probs=71.6
Q ss_pred CCcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhccc------CCCeEEEEECCee
Q 030515 67 GNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH------WRGKLTYILDGDN 140 (176)
Q Consensus 67 g~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp------~~G~i~~~ldG~~ 140 (176)
++.+++++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|+++ ++|++ .++|++
T Consensus 9 ~~~~l~i~~l~~~------~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i--~~~g~~ 80 (259)
T PRK14274 9 KQEVYQINGMNLW------YGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEM--NYNGSN 80 (259)
T ss_pred CCceEEEeeEEEE------ECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEE--EECCEE
Confidence 3456888888877 555679999999999999999999999999999999999983 48999 999998
Q ss_pred ccCCcccCcccChhhHHHhhcceEEecccc
Q 030515 141 CRHGLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 141 v~~~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
+... ..+....+++++|++|++
T Consensus 81 ~~~~--------~~~~~~~~~~i~~v~q~~ 102 (259)
T PRK14274 81 ILKG--------KVDLVELRKNIGMVFQKG 102 (259)
T ss_pred cccc--------ccCHHHHhhceEEEecCC
Confidence 7531 112334566799999985
No 118
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.69 E-value=9.6e-17 Score=133.67 Aligned_cols=85 Identities=25% Similarity=0.247 Sum_probs=69.4
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc------cCCCeEEEEECCeeccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL------HWRGKLTYILDGDNCRH 143 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll------p~~G~i~~~ldG~~v~~ 143 (176)
+++++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|+++..
T Consensus 13 ~l~~~~l~~~------~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i--~~~g~~~~~ 84 (260)
T PRK10744 13 KIQVRNLNFY------YGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEI--LLDGENILT 84 (260)
T ss_pred eEEEEEEEEE------eCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEE--EECCEEccc
Confidence 4667777766 55567999999999999999999999999999999999997 268999 999998742
Q ss_pred CcccCcccChhhHHHhhcceEEecccc
Q 030515 144 GLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 144 ~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
...+....+++|+|++|++
T Consensus 85 --------~~~~~~~~~~~i~~~~q~~ 103 (260)
T PRK10744 85 --------PKQDIALLRAKVGMVFQKP 103 (260)
T ss_pred --------cccchHHHhcceEEEecCC
Confidence 1123345567899999985
No 119
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=8.4e-17 Score=132.90 Aligned_cols=82 Identities=17% Similarity=0.243 Sum_probs=68.3
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc----cCCCeEEEEECCeeccCCcc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL----HWRGKLTYILDGDNCRHGLN 146 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll----p~~G~i~~~ldG~~v~~~~~ 146 (176)
++++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|++ |++|+| .++|+++...
T Consensus 3 ~~~~~l~~~------~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i--~~~g~~i~~~-- 72 (246)
T PRK14269 3 AKTTNLNLF------YGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLV--EIEGKDVKNQ-- 72 (246)
T ss_pred eeeeeeEEE------ECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEE--EECCEecccC--
Confidence 456666666 55567999999999999999999999999999999999986 478999 9999988531
Q ss_pred cCcccChhhHHHhhcceEEecccc
Q 030515 147 RDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 147 ~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
.....+++|+|++|++
T Consensus 73 --------~~~~~~~~i~~~~q~~ 88 (246)
T PRK14269 73 --------DVVALRKNVGMVFQQP 88 (246)
T ss_pred --------CHHHHhhhEEEEecCC
Confidence 2334567899999986
No 120
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=8.2e-17 Score=134.83 Aligned_cols=86 Identities=20% Similarity=0.147 Sum_probs=69.9
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
+++++++.+.|+- ....+++++||++++||+++|+|+||||||||+++|+|++ |++|+| +++|+++..
T Consensus 7 ~l~i~~l~~~~~~----~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i--~~~g~~~~~----- 75 (269)
T PRK13648 7 IIVFKNVSFQYQS----DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI--FYNNQAITD----- 75 (269)
T ss_pred eEEEEEEEEEcCC----CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE--EECCEECCc-----
Confidence 5677777776321 1235899999999999999999999999999999999999 799999 999998743
Q ss_pred cccChhhHHHhhcceEEeccccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLSI 171 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f~ 171 (176)
......+++++|++|++.
T Consensus 76 -----~~~~~~~~~i~~v~q~~~ 93 (269)
T PRK13648 76 -----DNFEKLRKHIGIVFQNPD 93 (269)
T ss_pred -----CCHHHHHhheeEEEeChH
Confidence 233445678999999863
No 121
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.1e-16 Score=132.25 Aligned_cols=86 Identities=21% Similarity=0.264 Sum_probs=69.9
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-c-----CCCeEEEEECCeecc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-H-----WRGKLTYILDGDNCR 142 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p-----~~G~i~~~ldG~~v~ 142 (176)
.+++++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|++ | ++|++ .++|.++.
T Consensus 2 ~~l~~~~l~~~------~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i--~i~g~~~~ 73 (250)
T PRK14262 2 PIIEIENFSAY------YGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKI--YFKGQDIY 73 (250)
T ss_pred ceEEEEeeEEE------eCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEE--EECCEEcc
Confidence 35677777777 55567899999999999999999999999999999999998 3 78999 99998874
Q ss_pred CCcccCcccChhhHHHhhcceEEecccc
Q 030515 143 HGLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 143 ~~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
.. .......+++++|++|++
T Consensus 74 ~~--------~~~~~~~~~~i~~~~q~~ 93 (250)
T PRK14262 74 DP--------QLDVTEYRKKVGMVFQKP 93 (250)
T ss_pred cc--------hhhHHHhhhhEEEEecCC
Confidence 31 123334566799999986
No 122
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.69 E-value=4.8e-17 Score=142.62 Aligned_cols=81 Identities=19% Similarity=0.226 Sum_probs=69.0
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCC--CeEEEEECCeeccCCccc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWR--GKLTYILDGDNCRHGLNR 147 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~--G~i~~~ldG~~v~~~~~~ 147 (176)
++++++.+. |+...+++++||++++||+++|+||||||||||+|+|+|++ |++ |+| .++|+++...
T Consensus 6 l~~~~l~~~------~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i--~~~g~~~~~~--- 74 (362)
T TIGR03258 6 IRIDHLRVA------YGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRI--AIADRDLTHA--- 74 (362)
T ss_pred EEEEEEEEE------ECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEE--EECCEECCCC---
Confidence 567777777 55667999999999999999999999999999999999999 799 999 9999988532
Q ss_pred CcccChhhHHHhhcceEEeccccc
Q 030515 148 DLSFKAEDRVENIRRIGSVFVLSI 171 (176)
Q Consensus 148 d~~~~~~~~~~~rrrig~V~Q~f~ 171 (176)
. ..+|+|+||||++.
T Consensus 75 ----~-----~~~r~ig~vfQ~~~ 89 (362)
T TIGR03258 75 ----P-----PHKRGLALLFQNYA 89 (362)
T ss_pred ----C-----HHHCCEEEEECCcc
Confidence 1 12468999999874
No 123
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1e-16 Score=132.41 Aligned_cols=85 Identities=22% Similarity=0.251 Sum_probs=69.0
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-c-----CCCeEEEEECCeeccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-H-----WRGKLTYILDGDNCRH 143 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p-----~~G~i~~~ldG~~v~~ 143 (176)
.++++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|++ | ++|+| .++|+++..
T Consensus 3 ~l~~~~l~~~------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i--~~~g~~~~~ 74 (250)
T PRK14240 3 KISVKDLDLF------YGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEV--LLDGQDIYK 74 (250)
T ss_pred eEEEEEEEEE------ECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE--EECCEEccc
Confidence 4667777777 45557999999999999999999999999999999999986 2 58999 999998753
Q ss_pred CcccCcccChhhHHHhhcceEEecccc
Q 030515 144 GLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 144 ~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
. ..+....+++++|++|++
T Consensus 75 ~--------~~~~~~~~~~i~~~~q~~ 93 (250)
T PRK14240 75 S--------DIDVNQLRKRVGMVFQQP 93 (250)
T ss_pred c--------ccchHHHhccEEEEecCC
Confidence 1 123334567899999985
No 124
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=8e-17 Score=132.58 Aligned_cols=73 Identities=29% Similarity=0.391 Sum_probs=62.6
Q ss_pred cCc-ccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcce
Q 030515 86 KNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRI 163 (176)
Q Consensus 86 ~~~-~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrri 163 (176)
|+. ..+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|+++... +....++++
T Consensus 10 ~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~~~~~----------~~~~~~~~i 77 (242)
T cd03295 10 YGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI--FIDGEDIREQ----------DPVELRRKI 77 (242)
T ss_pred eCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE--EECCeEcCcC----------ChHHhhcce
Confidence 554 57999999999999999999999999999999999999 799999 9999987532 223445679
Q ss_pred EEecccc
Q 030515 164 GSVFVLS 170 (176)
Q Consensus 164 g~V~Q~f 170 (176)
+|++|.+
T Consensus 78 ~~~~q~~ 84 (242)
T cd03295 78 GYVIQQI 84 (242)
T ss_pred EEEccCc
Confidence 9999985
No 125
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=9e-17 Score=126.15 Aligned_cols=69 Identities=29% Similarity=0.238 Sum_probs=60.5
Q ss_pred cceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceEEecc
Q 030515 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGSVFV 168 (176)
Q Consensus 90 ~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig~V~Q 168 (176)
.+++++||++++|++++|+|+||||||||+++|+|++ |.+|++ .++|+++... .....+++++|++|
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i--~~~g~~~~~~----------~~~~~~~~i~~~~~ 83 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI--LIDGVDLRDL----------DLESLRKNIAYVPQ 83 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEE--EECCEEhhhc----------CHHHHHhhEEEEcC
Confidence 6899999999999999999999999999999999999 799999 9999987542 23344567999999
Q ss_pred cc
Q 030515 169 LS 170 (176)
Q Consensus 169 ~f 170 (176)
++
T Consensus 84 ~~ 85 (171)
T cd03228 84 DP 85 (171)
T ss_pred Cc
Confidence 86
No 126
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=9.5e-17 Score=135.06 Aligned_cols=85 Identities=20% Similarity=0.310 Sum_probs=68.4
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
++++++.+.|. +...+++++||++++||+++|+|+||||||||+++|+|++ |.+|++ .++|+++..
T Consensus 2 l~~~~l~~~~~-----~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i--~~~g~~~~~------ 68 (275)
T PRK13639 2 LETRDLKYSYP-----DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV--LIKGEPIKY------ 68 (275)
T ss_pred EEEEEEEEEeC-----CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEE--EECCEECcc------
Confidence 45666666631 2356899999999999999999999999999999999999 789999 999998742
Q ss_pred ccChhhHHHhhcceEEecccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f 170 (176)
........+++|+|++|++
T Consensus 69 --~~~~~~~~~~~i~~v~q~~ 87 (275)
T PRK13639 69 --DKKSLLEVRKTVGIVFQNP 87 (275)
T ss_pred --ccchHHHHHhheEEEeeCh
Confidence 1123334567899999986
No 127
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=5.8e-17 Score=133.20 Aligned_cols=80 Identities=24% Similarity=0.258 Sum_probs=67.3
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
++++++.+. |+...+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|+++...
T Consensus 3 l~~~~l~~~------~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i--~~~g~~~~~~----- 69 (239)
T cd03296 3 IEVRNVSKR------FGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTI--LFGGEDATDV----- 69 (239)
T ss_pred EEEEeEEEE------ECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EECCEECCcC-----
Confidence 566777776 55567999999999999999999999999999999999999 799999 9999987532
Q ss_pred ccChhhHHHhhcceEEecccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f 170 (176)
. . .+++++||+|.+
T Consensus 70 --~--~---~~~~i~~v~q~~ 83 (239)
T cd03296 70 --P--V---QERNVGFVFQHY 83 (239)
T ss_pred --C--c---cccceEEEecCC
Confidence 1 1 135799999986
No 128
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.69 E-value=1.1e-16 Score=133.99 Aligned_cols=89 Identities=26% Similarity=0.322 Sum_probs=70.7
Q ss_pred EEEeccceeeeccccc---cCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCc
Q 030515 70 LCQNSTVAKSTNILWH---KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGL 145 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~---~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~ 145 (176)
+++++++.+.|+.... .+...+++++||++++|++++|+|+||||||||+++|+|++ |++|+| .++|.++...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~~~~~- 80 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEL--LIDDHPLHFG- 80 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEE--EECCEECCCC-
Confidence 5778888888632110 12357999999999999999999999999999999999999 799999 9999987531
Q ss_pred ccCcccChhhHHHhhcceEEecccc
Q 030515 146 NRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 146 ~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
.....+++++|++|++
T Consensus 81 ---------~~~~~~~~i~~v~q~~ 96 (267)
T PRK15112 81 ---------DYSYRSQRIRMIFQDP 96 (267)
T ss_pred ---------chhhHhccEEEEecCc
Confidence 2223345799999985
No 129
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.68 E-value=1.3e-16 Score=133.93 Aligned_cols=88 Identities=20% Similarity=0.164 Sum_probs=72.2
Q ss_pred CCcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhccc------CCCeEEEEECCee
Q 030515 67 GNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH------WRGKLTYILDGDN 140 (176)
Q Consensus 67 g~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp------~~G~i~~~ldG~~ 140 (176)
+..+++++++.+. |+...+++++||++++|++++|+|+||||||||+++|+|+++ ++|++ .++|++
T Consensus 21 ~~~~l~~~~l~~~------~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i--~~~g~~ 92 (271)
T PRK14238 21 KKVVFDTQNLNLW------YGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKI--LYRDQN 92 (271)
T ss_pred CceEEEEeeeEEE------ECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeE--EECCEE
Confidence 4457888888877 445578999999999999999999999999999999999973 78999 999998
Q ss_pred ccCCcccCcccChhhHHHhhcceEEecccc
Q 030515 141 CRHGLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 141 v~~~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
+... ......++++++|++|++
T Consensus 93 ~~~~--------~~~~~~~~~~i~~v~q~~ 114 (271)
T PRK14238 93 IFDK--------SYSVEELRTNVGMVFQKP 114 (271)
T ss_pred cccc--------cccHHHHhhhEEEEecCC
Confidence 7431 113345567899999986
No 130
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.68 E-value=9.7e-17 Score=146.11 Aligned_cols=93 Identities=27% Similarity=0.240 Sum_probs=79.3
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhccc-C----CCeEEEEECCeeccCC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-W----RGKLTYILDGDNCRHG 144 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp-~----~G~i~~~ldG~~v~~~ 144 (176)
+++++++...|... .+.+.+++|+||++++||+++|+|+|||||||++++|.|++| . .|+| .++|+++...
T Consensus 5 lL~V~nL~v~~~~~--~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I--~~~g~dl~~l 80 (539)
T COG1123 5 LLEVENLTVEFATD--GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEV--ILDGRDLLGL 80 (539)
T ss_pred eEEEeceEEEEecC--CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEE--EECCcchhcC
Confidence 78899999887665 344689999999999999999999999999999999999995 3 6899 9999988764
Q ss_pred cccCcccChhhHHHhhc-ceEEeccccccc
Q 030515 145 LNRDLSFKAEDRVENIR-RIGSVFVLSIHL 173 (176)
Q Consensus 145 ~~~d~~~~~~~~~~~rr-rig~V~Q~f~~l 173 (176)
++.+++.+|. +|+||||++...
T Consensus 81 -------~~~~~r~~rg~~Ia~i~Q~p~~s 103 (539)
T COG1123 81 -------SEREMRKLRGKRIAMIFQDPMTS 103 (539)
T ss_pred -------CHHHHHHhccccEEEEecCchhh
Confidence 6667777774 699999986554
No 131
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=8.8e-17 Score=129.45 Aligned_cols=76 Identities=22% Similarity=0.243 Sum_probs=64.1
Q ss_pred eccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCccc
Q 030515 73 NSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSF 151 (176)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~ 151 (176)
++++.+. |+...+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|+++.
T Consensus 3 ~~~l~~~------~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~~~--------- 65 (210)
T cd03269 3 VENVTKR------FGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEV--LFDGKPLD--------- 65 (210)
T ss_pred EEEEEEE------ECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EECCCchh---------
Confidence 4455555 55567999999999999999999999999999999999998 799999 99998763
Q ss_pred ChhhHHHhhcceEEecccc
Q 030515 152 KAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 152 ~~~~~~~~rrrig~V~Q~f 170 (176)
. ..+++++|++|++
T Consensus 66 ---~--~~~~~i~~~~q~~ 79 (210)
T cd03269 66 ---I--AARNRIGYLPEER 79 (210)
T ss_pred ---H--HHHccEEEeccCC
Confidence 1 2356799999986
No 132
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=1.4e-16 Score=131.04 Aligned_cols=88 Identities=22% Similarity=0.161 Sum_probs=69.4
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
++++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|+++....
T Consensus 3 l~~~~l~~~------~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~~~~~~---- 70 (242)
T PRK11124 3 IQLNGINCF------YGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL--NIAGNHFDFSK---- 70 (242)
T ss_pred EEEEeeEEE------ECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EECCEeccccc----
Confidence 556666666 55567999999999999999999999999999999999998 799999 99999873100
Q ss_pred ccChhhHHHhhcceEEecccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f 170 (176)
..........+++|+|++|.+
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~ 91 (242)
T PRK11124 71 TPSDKAIRELRRNVGMVFQQY 91 (242)
T ss_pred ccchhhHHHHHhheEEEecCc
Confidence 001123445567899999976
No 133
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.68 E-value=1.4e-16 Score=133.42 Aligned_cols=86 Identities=27% Similarity=0.223 Sum_probs=70.8
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-c-----CCCeEEEEECCeecc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-H-----WRGKLTYILDGDNCR 142 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p-----~~G~i~~~ldG~~v~ 142 (176)
..++++++.+. |+...+++++||++++|++++|+|+||||||||+++|+|++ | ++|+| +++|+++.
T Consensus 18 ~~l~~~nl~~~------~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I--~~~g~~i~ 89 (267)
T PRK14235 18 IKMRARDVSVF------YGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKI--TLDGEDIY 89 (267)
T ss_pred ceEEEEeEEEE------ECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEE--EECCEECc
Confidence 46778888777 55567999999999999999999999999999999999998 3 78999 99999885
Q ss_pred CCcccCcccChhhHHHhhcceEEecccc
Q 030515 143 HGLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 143 ~~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
.. ..+....+++++|++|++
T Consensus 90 ~~--------~~~~~~~~~~i~~v~q~~ 109 (267)
T PRK14235 90 DP--------RLDVVELRARVGMVFQKP 109 (267)
T ss_pred cc--------ccchHHHhhceEEEecCC
Confidence 31 112334566799999985
No 134
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.68 E-value=9.5e-17 Score=134.18 Aligned_cols=83 Identities=25% Similarity=0.289 Sum_probs=69.6
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
++.++++.+. |++..+++++||++++|++++|+|+||||||||+++|+|++ |+.|++ .++|+++...
T Consensus 7 ~l~i~~l~~~------~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i--~~~g~~~~~~---- 74 (265)
T PRK10253 7 RLRGEQLTLG------YGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHV--WLDGEHIQHY---- 74 (265)
T ss_pred EEEEEEEEEE------ECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEE--EECCEEhhhC----
Confidence 4667777776 55667999999999999999999999999999999999999 799999 9999987531
Q ss_pred cccChhhHHHhhcceEEecccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f 170 (176)
.....+++++|+||++
T Consensus 75 ------~~~~~~~~i~~v~q~~ 90 (265)
T PRK10253 75 ------ASKEVARRIGLLAQNA 90 (265)
T ss_pred ------CHHHHhhheEEeeccC
Confidence 2333456799999986
No 135
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.68 E-value=1.3e-16 Score=128.35 Aligned_cols=86 Identities=20% Similarity=0.103 Sum_probs=69.7
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCccc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNR 147 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~ 147 (176)
..++++++.+.|+. ....+++++||++++|++++|+|+||||||||+++|.|++ |++|++ .++|.++...
T Consensus 5 ~~l~~~~l~~~~~~----~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i--~~~g~~~~~~--- 75 (207)
T cd03369 5 GEIEVENLSVRYAP----DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKI--EIDGIDISTI--- 75 (207)
T ss_pred CeEEEEEEEEEeCC----CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeE--EECCEEhHHC---
Confidence 34667777776421 1236899999999999999999999999999999999998 799999 9999987532
Q ss_pred CcccChhhHHHhhcceEEecccc
Q 030515 148 DLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 148 d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
...+.+++|+|++|++
T Consensus 76 -------~~~~~~~~i~~v~q~~ 91 (207)
T cd03369 76 -------PLEDLRSSLTIIPQDP 91 (207)
T ss_pred -------CHHHHHhhEEEEecCC
Confidence 2334566899999986
No 136
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.68 E-value=1.4e-16 Score=132.33 Aligned_cols=92 Identities=22% Similarity=0.186 Sum_probs=70.9
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCccc--
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNR-- 147 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~-- 147 (176)
++++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|+++.....+
T Consensus 6 l~~~~l~~~------~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i--~~~g~~~~~~~~~~~ 77 (257)
T PRK10619 6 LNVIDLHKR------YGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSI--VVNGQTINLVRDKDG 77 (257)
T ss_pred EEEeeeEEE------ECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE--EECCEEccccccccc
Confidence 567777776 55567999999999999999999999999999999999998 799999 9999887421000
Q ss_pred Ccc-cChhhHHHhhcceEEecccc
Q 030515 148 DLS-FKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 148 d~~-~~~~~~~~~rrrig~V~Q~f 170 (176)
.+. .+..+....+++++|++|++
T Consensus 78 ~~~~~~~~~~~~~~~~i~~v~q~~ 101 (257)
T PRK10619 78 QLKVADKNQLRLLRTRLTMVFQHF 101 (257)
T ss_pred ccccccchHHHHHhhceEEEecCc
Confidence 000 01123455667899999986
No 137
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=1.6e-16 Score=131.46 Aligned_cols=84 Identities=15% Similarity=0.128 Sum_probs=69.1
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
+++++++.+. |+...+++++||++.+|++++|+|+||||||||+++|+|++ |++|++ .++|.++...
T Consensus 5 ~l~~~~l~~~------~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i--~~~g~~~~~~---- 72 (255)
T PRK11300 5 LLSVSGLMMR------FGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTI--LLRGQHIEGL---- 72 (255)
T ss_pred eEEEeeEEEE------ECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceE--EECCEECCCC----
Confidence 5677777776 55668999999999999999999999999999999999998 799999 9999988542
Q ss_pred cccChhhHHHhhcceEEecccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f 170 (176)
. .....+..++|+||++
T Consensus 73 ---~--~~~~~~~~i~~~~q~~ 89 (255)
T PRK11300 73 ---P--GHQIARMGVVRTFQHV 89 (255)
T ss_pred ---C--HHHHHhcCeEEeccCc
Confidence 1 1112234699999985
No 138
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.68 E-value=1.8e-16 Score=131.79 Aligned_cols=87 Identities=24% Similarity=0.120 Sum_probs=70.2
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCee-----ccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDN-----CRH 143 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~-----v~~ 143 (176)
+++++++.+. |+...+++++||++++|++++|+|+||||||||+++|+|++ |++|+| .++|++ +..
T Consensus 6 ~l~~~~l~~~------~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~~~~~~i~~ 77 (258)
T PRK11701 6 LLSVRGLTKL------YGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEV--HYRMRDGQLRDLYA 77 (258)
T ss_pred eEEEeeeEEE------cCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE--EECCcccccccccc
Confidence 4677777776 55567999999999999999999999999999999999998 799999 999987 543
Q ss_pred CcccCcccChhhHHHh-hcceEEeccccc
Q 030515 144 GLNRDLSFKAEDRVEN-IRRIGSVFVLSI 171 (176)
Q Consensus 144 ~~~~d~~~~~~~~~~~-rrrig~V~Q~f~ 171 (176)
. ....+... +++++||+|++.
T Consensus 78 ~-------~~~~~~~~~~~~i~~v~q~~~ 99 (258)
T PRK11701 78 L-------SEAERRRLLRTEWGFVHQHPR 99 (258)
T ss_pred C-------CHHHHHHHhhcceEEEeeCcc
Confidence 2 22233333 456999999863
No 139
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=9.1e-17 Score=134.79 Aligned_cols=79 Identities=28% Similarity=0.342 Sum_probs=65.5
Q ss_pred ccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhh-
Q 030515 83 LWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENI- 160 (176)
Q Consensus 83 ~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~r- 160 (176)
...|+...+++++||++.+|++++|+|+||||||||+++|+|++ |++|++ .++|+++... ......+.+
T Consensus 31 ~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i--~i~g~~~~~~-------~~~~~~~~~~ 101 (269)
T cd03294 31 LKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKV--LIDGQDIAAM-------SRKELRELRR 101 (269)
T ss_pred hhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE--EECCEEcccc-------Chhhhhhhhc
Confidence 33477888999999999999999999999999999999999999 799999 9999987542 222333333
Q ss_pred cceEEecccc
Q 030515 161 RRIGSVFVLS 170 (176)
Q Consensus 161 rrig~V~Q~f 170 (176)
++++|++|.+
T Consensus 102 ~~i~~v~q~~ 111 (269)
T cd03294 102 KKISMVFQSF 111 (269)
T ss_pred CcEEEEecCc
Confidence 5799999986
No 140
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.68 E-value=3e-17 Score=136.41 Aligned_cols=85 Identities=18% Similarity=0.206 Sum_probs=74.5
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCccc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNR 147 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~ 147 (176)
++++++++.++ ||...+++++||++++||+++|+|||||||||++++|.|.+ |++|+| .++|+++...
T Consensus 3 ~lL~v~~l~k~------FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v--~~~G~~it~l--- 71 (250)
T COG0411 3 PLLEVRGLSKR------FGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTV--IFRGRDITGL--- 71 (250)
T ss_pred ceeeeccceee------cCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceE--EECCcccCCC---
Confidence 45778888888 89999999999999999999999999999999999999999 899999 9999999764
Q ss_pred CcccChhhHHHhhcceEEecccc
Q 030515 148 DLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 148 d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
...+..++.|+--||+.
T Consensus 72 ------~p~~iar~Gi~RTFQ~~ 88 (250)
T COG0411 72 ------PPHRIARLGIARTFQIT 88 (250)
T ss_pred ------CHHHHHhccceeecccc
Confidence 33444456799999975
No 141
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.68 E-value=1.5e-16 Score=129.15 Aligned_cols=89 Identities=21% Similarity=0.172 Sum_probs=68.9
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
++++++.+.++-. .+...+++++||++++|++++|+|+||||||||+++|.|++ |++|++ +++|+++...
T Consensus 2 l~~~~l~~~~~~~--~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i--~~~g~~~~~~----- 72 (220)
T TIGR02982 2 ISIRNLNHYYGHG--SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSL--KVLGQELYGA----- 72 (220)
T ss_pred EEEEEEEEEccCC--CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE--EECCEEhHhc-----
Confidence 3455555553210 01267999999999999999999999999999999999999 799999 9999988542
Q ss_pred ccChhhHHHhhcceEEecccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f 170 (176)
...+....++.++|++|++
T Consensus 73 --~~~~~~~~~~~i~~~~q~~ 91 (220)
T TIGR02982 73 --SEKELVQLRRNIGYIFQAH 91 (220)
T ss_pred --CHhHHHHHHhheEEEcCCh
Confidence 2223345567899999986
No 142
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.68 E-value=1.3e-16 Score=144.31 Aligned_cols=87 Identities=26% Similarity=0.243 Sum_probs=75.9
Q ss_pred CcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcc
Q 030515 68 NNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLN 146 (176)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~ 146 (176)
+.+++++++.|+ |+.+++|+++||++++||+++|+|+||||||||+|+|+|.. |++|+| .+||+.+...
T Consensus 6 ~~ll~~~~i~K~------FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I--~~~G~~~~~~-- 75 (500)
T COG1129 6 PPLLELRGISKS------FGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI--LIDGKPVAFS-- 75 (500)
T ss_pred cceeeeecceEE------cCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceE--EECCEEccCC--
Confidence 456888899888 89999999999999999999999999999999999999999 899999 9999999643
Q ss_pred cCcccChhhHHHhhcceEEeccccc
Q 030515 147 RDLSFKAEDRVENIRRIGSVFVLSI 171 (176)
Q Consensus 147 ~d~~~~~~~~~~~rrrig~V~Q~f~ 171 (176)
...+.....|++|+|+++
T Consensus 76 -------sp~~A~~~GI~~V~QEl~ 93 (500)
T COG1129 76 -------SPRDALAAGIATVHQELS 93 (500)
T ss_pred -------CHHHHHhCCcEEEeechh
Confidence 233334467999999873
No 143
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=1.5e-16 Score=132.33 Aligned_cols=87 Identities=22% Similarity=0.239 Sum_probs=70.3
Q ss_pred CcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-c-----CCCeEEEEECCeec
Q 030515 68 NNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-H-----WRGKLTYILDGDNC 141 (176)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p-----~~G~i~~~ldG~~v 141 (176)
+.+++++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|++ | ++|+| .++|+++
T Consensus 10 ~~~l~~~~l~~~------~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i--~~~g~~i 81 (258)
T PRK14268 10 QPQIKVENLNLW------YGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKV--SIEGEDI 81 (258)
T ss_pred ceeEEEeeeEEE------eCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEE--EECCEEc
Confidence 345777777776 55567999999999999999999999999999999999998 3 68999 9999987
Q ss_pred cCCcccCcccChhhHHHhhcceEEecccc
Q 030515 142 RHGLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 142 ~~~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
... ..+....++.++|++|.+
T Consensus 82 ~~~--------~~~~~~~~~~i~~v~q~~ 102 (258)
T PRK14268 82 YEP--------DVDVVELRKNVGMVFQKP 102 (258)
T ss_pred ccc--------cchHHHHhhhEEEEecCC
Confidence 531 112334556799999986
No 144
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.68 E-value=1.4e-16 Score=125.20 Aligned_cols=70 Identities=29% Similarity=0.229 Sum_probs=61.2
Q ss_pred ccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceEEec
Q 030515 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGSVF 167 (176)
Q Consensus 89 ~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig~V~ 167 (176)
..+++++||++++||+++|+|+||||||||+++|.|++ |++|++ .++|+++... .....+++++|++
T Consensus 15 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i--~~~g~~~~~~----------~~~~~~~~i~~~~ 82 (173)
T cd03246 15 PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV--RLDGADISQW----------DPNELGDHVGYLP 82 (173)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeE--EECCEEcccC----------CHHHHHhheEEEC
Confidence 46899999999999999999999999999999999999 799999 9999988542 2234556899999
Q ss_pred ccc
Q 030515 168 VLS 170 (176)
Q Consensus 168 Q~f 170 (176)
|++
T Consensus 83 q~~ 85 (173)
T cd03246 83 QDD 85 (173)
T ss_pred CCC
Confidence 986
No 145
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.68 E-value=4e-17 Score=131.98 Aligned_cols=94 Identities=22% Similarity=0.315 Sum_probs=76.6
Q ss_pred cEEEeccceeeeccc---cccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCC
Q 030515 69 NLCQNSTVAKSTNIL---WHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHG 144 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~---~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~ 144 (176)
.++++.+++|.+... ++.....+++.+||++.+|+.++|+|.||||||||+++|.|.+ |++|+| ++||+.+.+.
T Consensus 3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~i--l~n~~~L~~~ 80 (267)
T COG4167 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEI--LINDHPLHFG 80 (267)
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceE--EECCcccccc
Confidence 457788888776543 3345678999999999999999999999999999999999999 899999 9999998663
Q ss_pred cccCcccChhhHHHhhcceEEecccccccc
Q 030515 145 LNRDLSFKAEDRVENIRRIGSVFVLSIHLF 174 (176)
Q Consensus 145 ~~~d~~~~~~~~~~~rrrig~V~Q~f~~lf 174 (176)
+..-..++|.|+||++...|
T Consensus 81 ----------Dy~~R~k~IRMiFQDpnts~ 100 (267)
T COG4167 81 ----------DYSFRSKRIRMIFQDPNTSL 100 (267)
T ss_pred ----------chHhhhhheeeeecCCcccc
Confidence 33333367999999985543
No 146
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.68 E-value=1.4e-16 Score=128.18 Aligned_cols=81 Identities=17% Similarity=0.168 Sum_probs=67.5
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
++++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|+++...
T Consensus 2 l~~~~l~~~------~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v--~~~g~~~~~~----- 68 (204)
T PRK13538 2 LEARNLACE------RDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEV--LWQGEPIRRQ----- 68 (204)
T ss_pred eEEEEEEEE------ECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE--EECCEEcccc-----
Confidence 456666666 55567999999999999999999999999999999999998 799999 9999987531
Q ss_pred ccChhhHHHhhcceEEecccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f 170 (176)
....++++++++|.+
T Consensus 69 ------~~~~~~~~~~~~~~~ 83 (204)
T PRK13538 69 ------RDEYHQDLLYLGHQP 83 (204)
T ss_pred ------hHHhhhheEEeCCcc
Confidence 123456799999975
No 147
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=1.7e-16 Score=134.35 Aligned_cols=92 Identities=17% Similarity=0.161 Sum_probs=69.9
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
.++++++.+.|.-.. .....+++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|+++....
T Consensus 2 ~i~~~~l~~~~~~~~-~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i--~~~g~~~~~~~--- 75 (287)
T PRK13641 2 SIKFENVDYIYSPGT-PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTI--TIAGYHITPET--- 75 (287)
T ss_pred EEEEEEEEEEcCCCC-CccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE--EECCEECcccc---
Confidence 356777777742100 00146899999999999999999999999999999999999 799999 99999885310
Q ss_pred cccChhhHHHhhcceEEecccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f 170 (176)
......+.+++|+|++|++
T Consensus 76 ---~~~~~~~~~~~ig~v~q~~ 94 (287)
T PRK13641 76 ---GNKNLKKLRKKVSLVFQFP 94 (287)
T ss_pred ---ccchHHHHHhceEEEEeCh
Confidence 1123345566899999985
No 148
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=9.3e-17 Score=129.39 Aligned_cols=71 Identities=24% Similarity=0.236 Sum_probs=61.4
Q ss_pred cCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceE
Q 030515 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIG 164 (176)
Q Consensus 86 ~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig 164 (176)
|+...+++++||++++| +++|+|+||||||||+++|+|++ |++|++ .++|+++... . .+.+++++
T Consensus 10 ~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i--~~~g~~~~~~----------~-~~~~~~i~ 75 (211)
T cd03264 10 YGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTI--RIDGQDVLKQ----------P-QKLRRRIG 75 (211)
T ss_pred ECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEE--EECCCccccc----------h-HHHHhheE
Confidence 55567999999999999 99999999999999999999998 799999 9999887431 2 34567899
Q ss_pred Eecccc
Q 030515 165 SVFVLS 170 (176)
Q Consensus 165 ~V~Q~f 170 (176)
|++|++
T Consensus 76 ~~~q~~ 81 (211)
T cd03264 76 YLPQEF 81 (211)
T ss_pred EecCCC
Confidence 999986
No 149
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.68 E-value=6.7e-17 Score=130.25 Aligned_cols=78 Identities=23% Similarity=0.227 Sum_probs=64.6
Q ss_pred eccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCccc
Q 030515 73 NSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSF 151 (176)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~ 151 (176)
++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|+++...
T Consensus 3 ~~~l~~~------~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v--~~~g~~~~~~------- 67 (213)
T cd03301 3 LENVTKR------FGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI--YIGGRDVTDL------- 67 (213)
T ss_pred EEeeEEE------ECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EECCEECCcC-------
Confidence 4455555 55567999999999999999999999999999999999998 799999 9999987531
Q ss_pred ChhhHHHhhcceEEecccc
Q 030515 152 KAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 152 ~~~~~~~~rrrig~V~Q~f 170 (176)
. . .++++++++|++
T Consensus 68 ~--~---~~~~i~~~~q~~ 81 (213)
T cd03301 68 P--P---KDRDIAMVFQNY 81 (213)
T ss_pred C--c---ccceEEEEecCh
Confidence 1 1 125799999986
No 150
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=1.8e-16 Score=131.08 Aligned_cols=87 Identities=24% Similarity=0.258 Sum_probs=70.3
Q ss_pred CcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc---c---CCCeEEEEECCeec
Q 030515 68 NNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL---H---WRGKLTYILDGDNC 141 (176)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll---p---~~G~i~~~ldG~~v 141 (176)
..+++++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|++ | ++|+| .++|+++
T Consensus 3 ~~~l~~~~l~~~------~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i--~~~g~~~ 74 (252)
T PRK14255 3 KKIITSSDVHLF------YGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNV--SLRGQNI 74 (252)
T ss_pred cceEEEEeEEEE------ECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEE--EEcCEEc
Confidence 346778888777 55567999999999999999999999999999999999985 3 48999 9999988
Q ss_pred cCCcccCcccChhhHHHhhcceEEecccc
Q 030515 142 RHGLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 142 ~~~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
... ..+....+++++|++|++
T Consensus 75 ~~~--------~~~~~~~~~~i~~~~q~~ 95 (252)
T PRK14255 75 YAP--------NEDVVQLRKQVGMVFQQP 95 (252)
T ss_pred ccc--------cccHHHhcCeEEEEECCC
Confidence 531 123344556799999986
No 151
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=1.7e-16 Score=130.94 Aligned_cols=85 Identities=25% Similarity=0.222 Sum_probs=69.5
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-c-----CCCeEEEEECCeecc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-H-----WRGKLTYILDGDNCR 142 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p-----~~G~i~~~ldG~~v~ 142 (176)
.+++++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|++ | ++|++ .++|.++.
T Consensus 2 ~~l~~~~l~~~------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v--~~~g~~~~ 73 (249)
T PRK14253 2 NKFNIENLDLF------YGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKL--TMDGEDIY 73 (249)
T ss_pred CeEEEeccEEE------ECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEE--EECCEEcc
Confidence 35677777777 55567999999999999999999999999999999999998 4 38999 99998874
Q ss_pred CCcccCcccChhhHHHhhcceEEecccc
Q 030515 143 HGLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 143 ~~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
.. ......++.++|++|++
T Consensus 74 ~~---------~~~~~~~~~i~~~~q~~ 92 (249)
T PRK14253 74 GN---------IDVADLRIKVGMVFQKP 92 (249)
T ss_pred cc---------cchHHHHhheeEEecCC
Confidence 21 22334566799999986
No 152
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=1.2e-16 Score=130.43 Aligned_cols=69 Identities=28% Similarity=0.275 Sum_probs=60.6
Q ss_pred cceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceEEecc
Q 030515 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGSVFV 168 (176)
Q Consensus 90 ~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig~V~Q 168 (176)
.+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|+++... .....+++++|++|
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~~~~~----------~~~~~~~~i~~~~q 83 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI--LIDGHDVRDY----------TLASLRRQIGLVSQ 83 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEE--EECCEEhhhC----------CHHHHHhhEEEeCC
Confidence 6899999999999999999999999999999999999 799999 9999987531 23345667999999
Q ss_pred cc
Q 030515 169 LS 170 (176)
Q Consensus 169 ~f 170 (176)
++
T Consensus 84 ~~ 85 (234)
T cd03251 84 DV 85 (234)
T ss_pred CC
Confidence 85
No 153
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=1.6e-16 Score=125.43 Aligned_cols=75 Identities=27% Similarity=0.303 Sum_probs=63.0
Q ss_pred cCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceE
Q 030515 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIG 164 (176)
Q Consensus 86 ~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig 164 (176)
|+...+++++||++++|++++|+|+||||||||+++|.|++ |++|++ .++|+++... . ......++.++
T Consensus 10 ~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~~~~~-------~-~~~~~~~~~i~ 79 (178)
T cd03229 10 YGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI--LIDGEDLTDL-------E-DELPPLRRRIG 79 (178)
T ss_pred ECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EECCEEcccc-------c-hhHHHHhhcEE
Confidence 55567999999999999999999999999999999999998 689999 9999987542 1 01334556899
Q ss_pred Eecccc
Q 030515 165 SVFVLS 170 (176)
Q Consensus 165 ~V~Q~f 170 (176)
|++|.+
T Consensus 80 ~~~q~~ 85 (178)
T cd03229 80 MVFQDF 85 (178)
T ss_pred EEecCC
Confidence 999985
No 154
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.67 E-value=1.4e-16 Score=130.66 Aligned_cols=81 Identities=22% Similarity=0.341 Sum_probs=66.6
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
++++++.+. |+...+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|.++...
T Consensus 2 l~~~~l~~~------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i--~~~g~~i~~~----- 68 (236)
T TIGR03864 2 LEVAGLSFA------YGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQI--SVAGHDLRRA----- 68 (236)
T ss_pred EEEEeeEEE------ECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEE--EECCEEcccC-----
Confidence 455666665 55567999999999999999999999999999999999998 799999 9999887532
Q ss_pred ccChhhHHHhhcceEEecccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f 170 (176)
.. ..+++++|++|++
T Consensus 69 -----~~-~~~~~i~~~~q~~ 83 (236)
T TIGR03864 69 -----PR-AALARLGVVFQQP 83 (236)
T ss_pred -----Ch-hhhhhEEEeCCCC
Confidence 11 1235799999985
No 155
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.67 E-value=1e-16 Score=129.37 Aligned_cols=68 Identities=25% Similarity=0.233 Sum_probs=59.8
Q ss_pred cCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceE
Q 030515 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIG 164 (176)
Q Consensus 86 ~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig 164 (176)
|+...+++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|+++. ..+++++
T Consensus 9 ~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i--~~~g~~~~---------------~~~~~i~ 71 (213)
T cd03235 9 YGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSI--RVFGKPLE---------------KERKRIG 71 (213)
T ss_pred ECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEE--EECCccHH---------------HHHhheE
Confidence 55567999999999999999999999999999999999998 799999 89987652 2356799
Q ss_pred Eecccc
Q 030515 165 SVFVLS 170 (176)
Q Consensus 165 ~V~Q~f 170 (176)
|++|++
T Consensus 72 ~v~q~~ 77 (213)
T cd03235 72 YVPQRR 77 (213)
T ss_pred Eecccc
Confidence 999985
No 156
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.67 E-value=3e-17 Score=130.91 Aligned_cols=76 Identities=24% Similarity=0.295 Sum_probs=68.3
Q ss_pred cCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceE
Q 030515 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIG 164 (176)
Q Consensus 86 ~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig 164 (176)
.++..+|+++||.+++||.++|+||||||||||+|+++-++ |++|.+ ++.|+++.. ....++|.+|+
T Consensus 13 a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l--~f~Ge~vs~----------~~pea~Rq~Vs 80 (223)
T COG4619 13 AGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTL--LFEGEDVST----------LKPEAYRQQVS 80 (223)
T ss_pred cCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceE--EEcCccccc----------cChHHHHHHHH
Confidence 56778999999999999999999999999999999999999 899999 999999965 46667888999
Q ss_pred Eecccccccc
Q 030515 165 SVFVLSIHLF 174 (176)
Q Consensus 165 ~V~Q~f~~lf 174 (176)
|+.|.+ .||
T Consensus 81 Y~~Q~p-aLf 89 (223)
T COG4619 81 YCAQTP-ALF 89 (223)
T ss_pred HHHcCc-ccc
Confidence 999987 454
No 157
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.67 E-value=1.6e-16 Score=132.00 Aligned_cols=81 Identities=30% Similarity=0.211 Sum_probs=67.2
Q ss_pred EeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcc
Q 030515 72 QNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLS 150 (176)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~ 150 (176)
+++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|+++...
T Consensus 3 ~~~~l~~~------~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i--~~~g~~~~~~------ 68 (256)
T TIGR03873 3 RLSRVSWS------AGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTV--DLAGVDLHGL------ 68 (256)
T ss_pred eEEeEEEE------ECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEE--EECCEEcccC------
Confidence 34555555 56668999999999999999999999999999999999998 799999 9999988542
Q ss_pred cChhhHHHhhcceEEecccc
Q 030515 151 FKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 151 ~~~~~~~~~rrrig~V~Q~f 170 (176)
.....+++++|++|.+
T Consensus 69 ----~~~~~~~~i~~~~q~~ 84 (256)
T TIGR03873 69 ----SRRARARRVALVEQDS 84 (256)
T ss_pred ----CHHHHhhheEEecccC
Confidence 2234456799999986
No 158
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.67 E-value=1.5e-16 Score=130.42 Aligned_cols=82 Identities=20% Similarity=0.196 Sum_probs=65.2
Q ss_pred EeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc---cCCCeEEEEECCeeccCCcccC
Q 030515 72 QNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL---HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll---p~~G~i~~~ldG~~v~~~~~~d 148 (176)
+++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|++ |++|+| .++|+++...
T Consensus 2 ~~~~l~~~------~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i--~~~g~~~~~~---- 69 (243)
T TIGR01978 2 KIKDLHVS------VEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTI--LFKGQDLLEL---- 69 (243)
T ss_pred eEeeEEEE------ECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceE--EECCEecCCC----
Confidence 34555555 55567999999999999999999999999999999999993 689999 9999988542
Q ss_pred cccChhhHHHhhcceEEecccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f 170 (176)
+.. ...+.+++||+|++
T Consensus 70 ---~~~--~~~~~~i~~v~q~~ 86 (243)
T TIGR01978 70 ---EPD--ERARAGLFLAFQYP 86 (243)
T ss_pred ---CHH--HhhccceEeeeccc
Confidence 111 11234599999986
No 159
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.67 E-value=1.1e-16 Score=136.48 Aligned_cols=72 Identities=22% Similarity=0.224 Sum_probs=63.0
Q ss_pred cCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceE
Q 030515 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIG 164 (176)
Q Consensus 86 ~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig 164 (176)
|+...+++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|+++.. .....++++|
T Consensus 3 y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i--~~~g~~~~~-----------~~~~~~~~i~ 69 (302)
T TIGR01188 3 YGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTA--RVAGYDVVR-----------EPRKVRRSIG 69 (302)
T ss_pred eCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EECCEEccc-----------CHHHHHhhcE
Confidence 56678999999999999999999999999999999999999 899999 999998753 1234466799
Q ss_pred Eecccc
Q 030515 165 SVFVLS 170 (176)
Q Consensus 165 ~V~Q~f 170 (176)
|++|++
T Consensus 70 ~~~q~~ 75 (302)
T TIGR01188 70 IVPQYA 75 (302)
T ss_pred EecCCC
Confidence 999986
No 160
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.67 E-value=1.9e-16 Score=124.96 Aligned_cols=68 Identities=28% Similarity=0.232 Sum_probs=59.7
Q ss_pred cceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceEEecc
Q 030515 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGSVFV 168 (176)
Q Consensus 90 ~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig~V~Q 168 (176)
.+++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|+++.. . ....+++++|++|
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i--~~~g~~~~~----------~-~~~~~~~i~~~~q 82 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI--TLDGVPVSD----------L-EKALSSLISVLNQ 82 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEE--EECCEEHHH----------H-HHHHHhhEEEEcc
Confidence 6899999999999999999999999999999999998 799999 999987732 1 2345567999999
Q ss_pred cc
Q 030515 169 LS 170 (176)
Q Consensus 169 ~f 170 (176)
++
T Consensus 83 ~~ 84 (178)
T cd03247 83 RP 84 (178)
T ss_pred CC
Confidence 86
No 161
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=1.6e-16 Score=131.45 Aligned_cols=84 Identities=24% Similarity=0.266 Sum_probs=68.0
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhccc------CCCeEEEEECCeeccCC
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH------WRGKLTYILDGDNCRHG 144 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp------~~G~i~~~ldG~~v~~~ 144 (176)
++++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|+++ ++|++ .++|+++...
T Consensus 5 l~~~nl~~~------~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v--~~~g~~i~~~ 76 (252)
T PRK14256 5 VKLEQLNVH------FGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKI--LLDDTDIYDR 76 (252)
T ss_pred EEEEEEEEE------eCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEE--EECCEEcccc
Confidence 556666666 555679999999999999999999999999999999999973 47999 9999988531
Q ss_pred cccCcccChhhHHHhhcceEEecccc
Q 030515 145 LNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 145 ~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
..+....+++++|++|++
T Consensus 77 --------~~~~~~~~~~i~~~~q~~ 94 (252)
T PRK14256 77 --------GVDPVSIRRRVGMVFQKP 94 (252)
T ss_pred --------cCChHHhhccEEEEecCC
Confidence 112334567899999986
No 162
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=1.9e-16 Score=133.84 Aligned_cols=86 Identities=19% Similarity=0.175 Sum_probs=69.4
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCC---CeEEEEECCeeccCCc
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWR---GKLTYILDGDNCRHGL 145 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~---G~i~~~ldG~~v~~~~ 145 (176)
+++++++.+.|.- ....+++++||++++||+++|+|+||||||||+++|+|++ |+. |++ +++|+++..
T Consensus 5 ~l~i~~l~~~~~~----~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i--~i~g~~~~~-- 76 (282)
T PRK13640 5 IVEFKHVSFTYPD----SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKI--TVDGITLTA-- 76 (282)
T ss_pred eEEEEEEEEEcCC----CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEE--EECCEECCc--
Confidence 5677777776321 1246999999999999999999999999999999999999 776 899 999998853
Q ss_pred ccCcccChhhHHHhhcceEEeccccc
Q 030515 146 NRDLSFKAEDRVENIRRIGSVFVLSI 171 (176)
Q Consensus 146 ~~d~~~~~~~~~~~rrrig~V~Q~f~ 171 (176)
......+++++|++|++.
T Consensus 77 --------~~~~~~~~~ig~v~q~~~ 94 (282)
T PRK13640 77 --------KTVWDIREKVGIVFQNPD 94 (282)
T ss_pred --------CCHHHHHhheEEEEECHH
Confidence 123345568999999864
No 163
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.67 E-value=1.7e-16 Score=134.36 Aligned_cols=84 Identities=18% Similarity=0.168 Sum_probs=69.6
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeeccCCcccCcc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLS 150 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~~~~~~d~~ 150 (176)
++++++.+.|. .+...+++++||++++||+++|+|+||||||||+++|+|+++.+|+| ++||.++...
T Consensus 3 i~~~nls~~~~----~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I--~i~g~~i~~~------ 70 (275)
T cd03289 3 MTVKDLTAKYT----EGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDI--QIDGVSWNSV------ 70 (275)
T ss_pred EEEEEEEEEeC----CCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEE--EECCEEhhhC------
Confidence 45666666631 13446899999999999999999999999999999999999888999 9999988542
Q ss_pred cChhhHHHhhcceEEecccc
Q 030515 151 FKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 151 ~~~~~~~~~rrrig~V~Q~f 170 (176)
...+++++|+||+|++
T Consensus 71 ----~~~~lr~~i~~v~q~~ 86 (275)
T cd03289 71 ----PLQKWRKAFGVIPQKV 86 (275)
T ss_pred ----CHHHHhhhEEEECCCc
Confidence 4445677899999987
No 164
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=1.8e-16 Score=131.50 Aligned_cols=83 Identities=17% Similarity=0.154 Sum_probs=69.1
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
+++++++.+. |+...+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|+++...
T Consensus 2 ~l~~~~l~~~------~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i--~~~g~~~~~~---- 69 (255)
T PRK11231 2 TLRTENLTVG------YGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTV--FLGDKPISML---- 69 (255)
T ss_pred EEEEEeEEEE------ECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEE--EECCEEhHHC----
Confidence 4667777766 55668999999999999999999999999999999999998 799999 9999887431
Q ss_pred cccChhhHHHhhcceEEecccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f 170 (176)
...+.++.++|++|+.
T Consensus 70 ------~~~~~~~~i~~~~q~~ 85 (255)
T PRK11231 70 ------SSRQLARRLALLPQHH 85 (255)
T ss_pred ------CHHHHhhheEEecccC
Confidence 2233456799999975
No 165
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.67 E-value=2.5e-16 Score=130.25 Aligned_cols=86 Identities=27% Similarity=0.133 Sum_probs=68.6
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCee-----ccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDN-----CRH 143 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~-----v~~ 143 (176)
+++++++.+. |+...+++++||++++|++++|+|+||||||||+++|+|++ |++|+| .++|++ +..
T Consensus 3 ~l~~~~l~~~------~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~~~~~~~~~ 74 (253)
T TIGR02323 3 LLQVSGLSKS------YGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTA--TYIMRSGAELELYQ 74 (253)
T ss_pred eEEEeeeEEE------eCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE--EEeccccccccccc
Confidence 5667777777 55557899999999999999999999999999999999999 799999 899876 432
Q ss_pred CcccCcccChhhHHH-hhcceEEecccc
Q 030515 144 GLNRDLSFKAEDRVE-NIRRIGSVFVLS 170 (176)
Q Consensus 144 ~~~~d~~~~~~~~~~-~rrrig~V~Q~f 170 (176)
. ...++.+ .++.++|++|++
T Consensus 75 ~-------~~~~~~~~~~~~i~~~~q~~ 95 (253)
T TIGR02323 75 L-------SEAERRRLMRTEWGFVHQNP 95 (253)
T ss_pred C-------CHHHHHHhhhcceEEEEeCc
Confidence 1 2223332 245699999985
No 166
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.67 E-value=2e-16 Score=126.59 Aligned_cols=72 Identities=22% Similarity=0.175 Sum_probs=62.2
Q ss_pred cCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceE
Q 030515 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIG 164 (176)
Q Consensus 86 ~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig 164 (176)
|+...+++++||++.+|++++|+|+||||||||+++|+|++ |++|++ .++|+++... . ...+++++
T Consensus 10 ~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~~~~~----------~-~~~~~~i~ 76 (198)
T TIGR01189 10 RGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEV--RWNGTALAEQ----------R-DEPHRNIL 76 (198)
T ss_pred ECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEE--EECCEEcccc----------h-HHhhhheE
Confidence 56668999999999999999999999999999999999998 799999 9999987542 1 23456799
Q ss_pred Eecccc
Q 030515 165 SVFVLS 170 (176)
Q Consensus 165 ~V~Q~f 170 (176)
|++|..
T Consensus 77 ~~~q~~ 82 (198)
T TIGR01189 77 YLGHLP 82 (198)
T ss_pred EeccCc
Confidence 999974
No 167
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=2.2e-16 Score=132.76 Aligned_cols=91 Identities=20% Similarity=0.138 Sum_probs=69.2
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
++++++.+.|+-.. .....+++++||++++|++++|+|+||||||||+++|+|++ |++|+| .++|+++....
T Consensus 3 l~~~~l~~~~~~~~-~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i--~~~g~~i~~~~---- 75 (280)
T PRK13649 3 INLQNVSYTYQAGT-PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSV--RVDDTLITSTS---- 75 (280)
T ss_pred EEEEEEEEEcCCCC-ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EECCEEccccc----
Confidence 55667766642110 00146899999999999999999999999999999999998 799999 99999875320
Q ss_pred ccChhhHHHhhcceEEecccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f 170 (176)
...+....+++|+|++|.+
T Consensus 76 --~~~~~~~~~~~i~~~~q~~ 94 (280)
T PRK13649 76 --KNKDIKQIRKKVGLVFQFP 94 (280)
T ss_pred --cccCHHHHHhheEEEeeCh
Confidence 0123345567899999985
No 168
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.67 E-value=1.8e-16 Score=129.00 Aligned_cols=82 Identities=23% Similarity=0.247 Sum_probs=67.4
Q ss_pred EEeccceeeeccccccC-cccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 71 CQNSTVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~-~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
++++++.+. |+ ...+++++||++.+|++++|+|+||||||||+++|+|++ |.+|++ .++|.++...
T Consensus 3 l~~~~l~~~------~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~~~~~---- 70 (229)
T cd03254 3 IEFENVNFS------YDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI--LIDGIDIRDI---- 70 (229)
T ss_pred EEEEEEEEe------cCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE--EECCEeHHHc----
Confidence 445666665 44 346899999999999999999999999999999999999 799999 9999887531
Q ss_pred cccChhhHHHhhcceEEecccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f 170 (176)
.....+++++|++|++
T Consensus 71 ------~~~~~~~~i~~~~q~~ 86 (229)
T cd03254 71 ------SRKSLRSMIGVVLQDT 86 (229)
T ss_pred ------CHHHHhhhEEEecCCc
Confidence 2334566799999985
No 169
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=3.1e-16 Score=132.04 Aligned_cols=90 Identities=21% Similarity=0.182 Sum_probs=72.5
Q ss_pred ccCCcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-c-----CCCeEEEEECC
Q 030515 65 ISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-H-----WRGKLTYILDG 138 (176)
Q Consensus 65 ~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p-----~~G~i~~~ldG 138 (176)
..+..+++++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|++ | +.|++ .++|
T Consensus 15 ~~~~~~l~~~nl~~~------~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i--~~~g 86 (274)
T PRK14265 15 NPDHSVFEVEGVKVF------YGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRL--LYRD 86 (274)
T ss_pred CCCCceEEEeeEEEE------eCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceE--EECC
Confidence 344567888888887 55567999999999999999999999999999999999997 3 47999 9999
Q ss_pred eeccCCcccCcccChhhHHHhhcceEEecccc
Q 030515 139 DNCRHGLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 139 ~~v~~~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
+++... .......+++|+|++|++
T Consensus 87 ~~l~~~--------~~~~~~~~~~i~~v~q~~ 110 (274)
T PRK14265 87 RNIYDS--------QINSVKLRRQVGMVFQRP 110 (274)
T ss_pred Eecccc--------cchhHHHhhcEEEEccCC
Confidence 987431 112334567899999985
No 170
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.67 E-value=2.4e-16 Score=131.06 Aligned_cols=85 Identities=26% Similarity=0.257 Sum_probs=68.7
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-c-----CCCeEEEEECCeeccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-H-----WRGKLTYILDGDNCRH 143 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p-----~~G~i~~~ldG~~v~~ 143 (176)
+++++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|++ | ++|+| .++|+++..
T Consensus 4 ~l~i~~v~~~------~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I--~~~g~~~~~ 75 (258)
T PRK14241 4 RIDVKDLNIY------YGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEV--LLDGEDLYG 75 (258)
T ss_pred cEEEeeEEEE------ECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEE--EECCEeccc
Confidence 3667777777 55567999999999999999999999999999999999998 4 58999 999998742
Q ss_pred CcccCcccChhhHHHhhcceEEecccc
Q 030515 144 GLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 144 ~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
. . ......++.++|++|++
T Consensus 76 ~-------~-~~~~~~~~~i~~~~q~~ 94 (258)
T PRK14241 76 P-------G-VDPVAVRRTIGMVFQRP 94 (258)
T ss_pred c-------c-cChHHHhcceEEEcccc
Confidence 1 0 12234566799999985
No 171
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.67 E-value=1.9e-16 Score=128.51 Aligned_cols=65 Identities=26% Similarity=0.317 Sum_probs=58.3
Q ss_pred ccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceEEec
Q 030515 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGSVF 167 (176)
Q Consensus 89 ~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig~V~ 167 (176)
..+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|+++.. .+++++||+
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i--~~~g~~~~~---------------~~~~i~~v~ 79 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEV--LVDGEPVTG---------------PGPDRGYVF 79 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EECCEECcc---------------ccCcEEEEe
Confidence 57999999999999999999999999999999999998 799999 899988742 235799999
Q ss_pred ccc
Q 030515 168 VLS 170 (176)
Q Consensus 168 Q~f 170 (176)
|.+
T Consensus 80 q~~ 82 (220)
T cd03293 80 QQD 82 (220)
T ss_pred ccc
Confidence 975
No 172
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.67 E-value=2e-16 Score=127.19 Aligned_cols=80 Identities=19% Similarity=0.196 Sum_probs=66.2
Q ss_pred EeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcc
Q 030515 72 QNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLS 150 (176)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~ 150 (176)
+++++.+. |+...+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|+++...
T Consensus 2 ~i~~l~~~------~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~~~~~------ 67 (201)
T cd03231 2 EADELTCE------RDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRV--LLNGGPLDFQ------ 67 (201)
T ss_pred EEEEEEEE------eCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE--EECCEecccc------
Confidence 34555555 55667899999999999999999999999999999999998 799999 9999887421
Q ss_pred cChhhHHHhhcceEEecccc
Q 030515 151 FKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 151 ~~~~~~~~~rrrig~V~Q~f 170 (176)
...++++++|++|.+
T Consensus 68 -----~~~~~~~i~~~~q~~ 82 (201)
T cd03231 68 -----RDSIARGLLYLGHAP 82 (201)
T ss_pred -----cHHhhhheEEecccc
Confidence 124556899999975
No 173
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=2.4e-16 Score=132.76 Aligned_cols=87 Identities=25% Similarity=0.296 Sum_probs=70.4
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
+++++++.+.|.-. ....+++++||++++||+++|+|+||||||||+++|+|++ |++|+| +++|+++..
T Consensus 4 ~l~~~~l~~~~~~~---~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i--~~~g~~i~~----- 73 (277)
T PRK13642 4 ILEVENLVFKYEKE---SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV--KIDGELLTA----- 73 (277)
T ss_pred eEEEEEEEEEcCCC---CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEE--EECCEECCc-----
Confidence 46777777774210 1235899999999999999999999999999999999999 799999 999998753
Q ss_pred cccChhhHHHhhcceEEeccccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLSI 171 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f~ 171 (176)
....+.+++++|++|++.
T Consensus 74 -----~~~~~~~~~i~~v~q~~~ 91 (277)
T PRK13642 74 -----ENVWNLRRKIGMVFQNPD 91 (277)
T ss_pred -----CCHHHHhcceEEEEECHH
Confidence 133455678999999863
No 174
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.67 E-value=1.8e-16 Score=143.67 Aligned_cols=84 Identities=31% Similarity=0.273 Sum_probs=71.6
Q ss_pred EEeccceeeeccccccCc-ccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 71 CQNSTVAKSTNILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~-~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
+++++++.. |.+ ..+++|+||++++|+.++|+|+||||||||+++|.|+. |++|+| .+||.++..
T Consensus 335 I~~~~vsf~------Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I--~i~g~~i~~----- 401 (529)
T TIGR02868 335 LELRDLSFG------YPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEV--TLDGVSVSS----- 401 (529)
T ss_pred EEEEEEEEe------cCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE--EECCEEhhh-----
Confidence 556666555 432 46899999999999999999999999999999999999 899999 999999953
Q ss_pred cccChhhHHHhhcceEEecccccccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLSIHLF 174 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f~~lf 174 (176)
. ..++|++|+||+|++ .+|
T Consensus 402 -----~-~~~lr~~i~~V~Q~~-~lF 420 (529)
T TIGR02868 402 -----L-QDELRRRISVFAQDA-HLF 420 (529)
T ss_pred -----H-HHHHHhheEEEccCc-ccc
Confidence 5 677788999999986 454
No 175
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=2.4e-16 Score=135.01 Aligned_cols=97 Identities=23% Similarity=0.206 Sum_probs=69.2
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCc----
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGL---- 145 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~---- 145 (176)
++++++.+.|.... .....+++++||++++||+++|+|+||||||||+++|+|++ |++|++ +++|+++....
T Consensus 3 i~~~~l~~~y~~~~-~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i--~~~g~~~~~~~~~~~ 79 (305)
T PRK13651 3 IKVKNIVKIFNKKL-PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTI--EWIFKDEKNKKKTKE 79 (305)
T ss_pred EEEEEEEEEECCCC-CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE--EEeceeccccccccc
Confidence 56777777753210 01236899999999999999999999999999999999999 799999 88887652100
Q ss_pred ------ccCccc----ChhhHHHhhcceEEecccc
Q 030515 146 ------NRDLSF----KAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 146 ------~~d~~~----~~~~~~~~rrrig~V~Q~f 170 (176)
.-++.. ......+.+++||||||++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~ 114 (305)
T PRK13651 80 KEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFA 114 (305)
T ss_pred ccccccccccccccccccchHHHHHhceEEEeeCc
Confidence 000000 0113445667899999985
No 176
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=2.6e-16 Score=133.30 Aligned_cols=88 Identities=25% Similarity=0.294 Sum_probs=71.4
Q ss_pred CCcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc------cCCCeEEEEECCee
Q 030515 67 GNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL------HWRGKLTYILDGDN 140 (176)
Q Consensus 67 g~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll------p~~G~i~~~ldG~~ 140 (176)
+..+++++++.+. |+...+++++||++++|++++|+|+||||||||+++|+|++ |++|+| .++|++
T Consensus 36 ~~~~l~i~~l~~~------~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I--~i~G~~ 107 (285)
T PRK14254 36 GETVIEARDLNVF------YGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGEL--TFRGKN 107 (285)
T ss_pred CCceEEEEEEEEE------ECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEE--EECCEE
Confidence 4556778787777 55567999999999999999999999999999999999997 378999 999998
Q ss_pred ccCCcccCcccChhhHHHhhcceEEecccc
Q 030515 141 CRHGLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 141 v~~~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
+... ..+....+++++|++|++
T Consensus 108 i~~~--------~~~~~~~~~~i~~v~q~~ 129 (285)
T PRK14254 108 VYDA--------DVDPVALRRRIGMVFQKP 129 (285)
T ss_pred cccc--------ccchHhhhccEEEEecCC
Confidence 7431 012234567899999986
No 177
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.66 E-value=2e-16 Score=133.40 Aligned_cols=82 Identities=22% Similarity=0.171 Sum_probs=67.5
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cC--------CCeEEEEECCeec
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HW--------RGKLTYILDGDNC 141 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~--------~G~i~~~ldG~~v 141 (176)
++++++.+. |+...+++++||++++|++++|+|+||||||||+++|+|++ |+ +|++ .++|+++
T Consensus 2 l~~~nl~~~------~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i--~~~g~~~ 73 (272)
T PRK13547 2 LTADHLHVA------RRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDV--TLNGEPL 73 (272)
T ss_pred eEEEEEEEE------ECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEE--EECCEEc
Confidence 456666666 55667999999999999999999999999999999999998 66 8999 9999987
Q ss_pred cCCcccCcccChhhHHHhhcceEEecccc
Q 030515 142 RHGLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 142 ~~~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
... .....++.++|++|++
T Consensus 74 ~~~----------~~~~~~~~~~~v~q~~ 92 (272)
T PRK13547 74 AAI----------DAPRLARLRAVLPQAA 92 (272)
T ss_pred ccC----------CHHHHHhhcEEecccC
Confidence 531 2234445689999975
No 178
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=3e-16 Score=129.78 Aligned_cols=85 Identities=26% Similarity=0.212 Sum_probs=68.9
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cC-----CCeEEEEECCeeccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HW-----RGKLTYILDGDNCRH 143 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~-----~G~i~~~ldG~~v~~ 143 (176)
+++++++.+. |+...+++++||++++|++++|+|+||||||||+++|+|++ |+ .|++ +++|+++..
T Consensus 4 ~l~~~~l~~~------~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v--~~~g~~~~~ 75 (251)
T PRK14249 4 KIKIRGVNFF------YHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAV--LLDNENIYS 75 (251)
T ss_pred eEEEEEEEEE------ECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEE--EECCEEccc
Confidence 4566677666 55567999999999999999999999999999999999998 55 5999 999998743
Q ss_pred CcccCcccChhhHHHhhcceEEecccc
Q 030515 144 GLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 144 ~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
. ..+....+++++||+|++
T Consensus 76 ~--------~~~~~~~~~~i~~v~q~~ 94 (251)
T PRK14249 76 P--------NLDVVNLRKRVGMVFQQP 94 (251)
T ss_pred c--------ccChHHhhceEEEEecCC
Confidence 1 112344567899999986
No 179
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.66 E-value=2.2e-16 Score=129.28 Aligned_cols=70 Identities=30% Similarity=0.335 Sum_probs=61.0
Q ss_pred ccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceEEec
Q 030515 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGSVF 167 (176)
Q Consensus 89 ~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig~V~ 167 (176)
..+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|+++... .....+++++|++
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i--~~~g~~~~~~----------~~~~~~~~i~~~~ 82 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRV--LVDGHDLALA----------DPAWLRRQVGVVL 82 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE--EECCeehHhc----------CHHHHhhcEEEEc
Confidence 56899999999999999999999999999999999999 799999 9999887531 2234566799999
Q ss_pred ccc
Q 030515 168 VLS 170 (176)
Q Consensus 168 Q~f 170 (176)
|+.
T Consensus 83 q~~ 85 (237)
T cd03252 83 QEN 85 (237)
T ss_pred CCc
Confidence 985
No 180
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.66 E-value=2.6e-16 Score=127.40 Aligned_cols=82 Identities=30% Similarity=0.287 Sum_probs=66.6
Q ss_pred EEeccceeeeccccccCc--ccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCccc
Q 030515 71 CQNSTVAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNR 147 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~--~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~ 147 (176)
++++++.+. |+. ..+++++||++++|++++|+|+||||||||+++|.|++ |++|++ .++|+++...
T Consensus 3 l~~~~l~~~------~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i--~~~g~~~~~~--- 71 (220)
T cd03245 3 IEFRNVSFS------YPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSV--LLDGTDIRQL--- 71 (220)
T ss_pred EEEEEEEEE------cCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeE--EECCEEhHHC---
Confidence 345566655 433 56899999999999999999999999999999999998 799999 9999887431
Q ss_pred CcccChhhHHHhhcceEEecccc
Q 030515 148 DLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 148 d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
.....+++++|++|++
T Consensus 72 -------~~~~~~~~i~~~~q~~ 87 (220)
T cd03245 72 -------DPADLRRNIGYVPQDV 87 (220)
T ss_pred -------CHHHHHhhEEEeCCCC
Confidence 2223456799999986
No 181
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.66 E-value=2.9e-16 Score=127.23 Aligned_cols=85 Identities=21% Similarity=0.176 Sum_probs=68.3
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
++++++.+.+. .+...+++++||++++|++++|+|+||||||||+++|+|++ |.+|++ .++|.++...
T Consensus 3 l~~~~l~~~~~----~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~~~~~----- 71 (221)
T cd03244 3 IEFKNVSLRYR----PNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSI--LIDGVDISKI----- 71 (221)
T ss_pred EEEEEEEEecC----CCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEE--EECCEEhHhC-----
Confidence 45666666532 11346999999999999999999999999999999999998 799999 9999987532
Q ss_pred ccChhhHHHhhcceEEeccccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLSI 171 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f~ 171 (176)
...+.+++++|++|.+.
T Consensus 72 -----~~~~~~~~i~~~~q~~~ 88 (221)
T cd03244 72 -----GLHDLRSRISIIPQDPV 88 (221)
T ss_pred -----CHHHHhhhEEEECCCCc
Confidence 33445678999999863
No 182
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=3.6e-16 Score=129.19 Aligned_cols=85 Identities=24% Similarity=0.258 Sum_probs=69.2
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhccc------CCCeEEEEECCeeccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH------WRGKLTYILDGDNCRH 143 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp------~~G~i~~~ldG~~v~~ 143 (176)
+++++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|+++ .+|++ .++|+++..
T Consensus 4 ~l~~~~l~~~------~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v--~i~g~~~~~ 75 (251)
T PRK14251 4 IISAKDVHLS------YGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEI--KFEGQNIYG 75 (251)
T ss_pred eEEEEeeEEE------ECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEE--EECCEEccc
Confidence 4566676666 556689999999999999999999999999999999999983 68999 999998742
Q ss_pred CcccCcccChhhHHHhhcceEEecccc
Q 030515 144 GLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 144 ~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
........++.+++++|++
T Consensus 76 --------~~~~~~~~~~~i~~~~q~~ 94 (251)
T PRK14251 76 --------SKMDLVELRKEVGMVFQQP 94 (251)
T ss_pred --------ccchHHHhhccEEEEecCC
Confidence 1123344566799999986
No 183
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=3.7e-16 Score=131.77 Aligned_cols=85 Identities=21% Similarity=0.261 Sum_probs=70.9
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-c-----CCCeEEEEECCeecc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-H-----WRGKLTYILDGDNCR 142 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p-----~~G~i~~~ldG~~v~ 142 (176)
.+++++++.+. |+...+++++||++++||+++|+|+||||||||+++|.|++ | ++|++ .++|.++.
T Consensus 20 ~~l~i~nl~~~------~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i--~~~g~~i~ 91 (276)
T PRK14271 20 PAMAAVNLTLG------FAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDV--LLGGRSIF 91 (276)
T ss_pred cEEEEeeEEEE------ECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEE--EECCEEcc
Confidence 35778888887 55668999999999999999999999999999999999998 4 58999 99999875
Q ss_pred CCcccCcccChhhHHHhhcceEEecccc
Q 030515 143 HGLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 143 ~~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
.. .+....+++++|++|++
T Consensus 92 ~~---------~~~~~~~~~i~~v~q~~ 110 (276)
T PRK14271 92 NY---------RDVLEFRRRVGMLFQRP 110 (276)
T ss_pred cc---------chhHHHhhheEEeccCC
Confidence 32 12334567899999986
No 184
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.66 E-value=3.1e-16 Score=141.77 Aligned_cols=84 Identities=21% Similarity=0.219 Sum_probs=69.9
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
+++++++.+. |+...+++++||++++|++++|+|+||||||||+++|+|++ |++|+| .++|+++...
T Consensus 4 ~i~~~~l~~~------~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i--~~~g~~~~~~---- 71 (501)
T PRK10762 4 LLQLKGIDKA------FPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSI--LYLGKEVTFN---- 71 (501)
T ss_pred eEEEeeeEEE------eCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEE--EECCEECCCC----
Confidence 5777777777 55567999999999999999999999999999999999999 799999 9999988532
Q ss_pred cccChhhHHHhhcceEEecccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f 170 (176)
. .....+++++||+|++
T Consensus 72 ---~--~~~~~~~~i~~v~q~~ 88 (501)
T PRK10762 72 ---G--PKSSQEAGIGIIHQEL 88 (501)
T ss_pred ---C--HHHHHhCCEEEEEcch
Confidence 1 1222345799999985
No 185
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.66 E-value=3.2e-16 Score=141.88 Aligned_cols=85 Identities=21% Similarity=0.212 Sum_probs=70.5
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCccc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNR 147 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~ 147 (176)
.+++++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|++ |++|+| .++|+++...
T Consensus 4 ~~l~~~~l~~~------~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i--~~~g~~i~~~--- 72 (510)
T PRK09700 4 PYISMAGIGKS------FGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTI--TINNINYNKL--- 72 (510)
T ss_pred ceEEEeeeEEE------cCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEE--EECCEECCCC---
Confidence 35778787777 56667999999999999999999999999999999999999 799999 9999988642
Q ss_pred CcccChhhHHHhhcceEEecccc
Q 030515 148 DLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 148 d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
. .....+++|+||+|++
T Consensus 73 ----~--~~~~~~~~i~~v~q~~ 89 (510)
T PRK09700 73 ----D--HKLAAQLGIGIIYQEL 89 (510)
T ss_pred ----C--HHHHHHCCeEEEeecc
Confidence 1 1112345799999985
No 186
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=3.9e-16 Score=128.92 Aligned_cols=85 Identities=26% Similarity=0.273 Sum_probs=69.2
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc---c---CCCeEEEEECCeeccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL---H---WRGKLTYILDGDNCRH 143 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll---p---~~G~i~~~ldG~~v~~ 143 (176)
+++++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|++ | ++|++ .++|+++..
T Consensus 3 ~l~~~~v~~~------~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v--~~~g~~i~~ 74 (250)
T PRK14266 3 RIEVENLNTY------FDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHI--YLDGVDIYD 74 (250)
T ss_pred EEEEEeEEEE------eCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEE--EECCEEccc
Confidence 4667777766 55567999999999999999999999999999999999985 3 78999 999998753
Q ss_pred CcccCcccChhhHHHhhcceEEecccc
Q 030515 144 GLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 144 ~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
. ..+..+.+++++|++|++
T Consensus 75 ~--------~~~~~~~~~~i~~~~q~~ 93 (250)
T PRK14266 75 P--------AVDVVELRKKVGMVFQKP 93 (250)
T ss_pred c--------cccHHHHhhheEEEecCC
Confidence 1 123445567899999985
No 187
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.66 E-value=3.7e-16 Score=145.08 Aligned_cols=94 Identities=20% Similarity=0.185 Sum_probs=74.9
Q ss_pred CcEEEeccceeeeccccc-----cCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeec
Q 030515 68 NNLCQNSTVAKSTNILWH-----KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNC 141 (176)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~-----~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v 141 (176)
..+++++++.+.|..... .+...+++++||++++||+++|+|+||||||||+++|+|++ |++|+| +++|+++
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I--~~~g~~i 388 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEI--IFNGQRI 388 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEE--EECCEEC
Confidence 457889999888632100 01256899999999999999999999999999999999999 799999 9999988
Q ss_pred cCCcccCcccChhhHHHhhcceEEecccc
Q 030515 142 RHGLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 142 ~~~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
... +..+....+++|+||||++
T Consensus 389 ~~~-------~~~~~~~~~~~i~~v~Q~~ 410 (623)
T PRK10261 389 DTL-------SPGKLQALRRDIQFIFQDP 410 (623)
T ss_pred CcC-------CHHHHHHhcCCeEEEecCc
Confidence 642 2234445567899999985
No 188
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.66 E-value=2.6e-16 Score=131.68 Aligned_cols=79 Identities=22% Similarity=0.154 Sum_probs=67.5
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCccc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNR 147 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~ 147 (176)
+.++++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|+++.
T Consensus 11 ~~l~i~~l~~~------~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i--~~~g~~~~----- 77 (257)
T PRK11247 11 TPLLLNAVSKR------YGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL--LAGTAPLA----- 77 (257)
T ss_pred CcEEEEEEEEE------ECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE--EECCEEHH-----
Confidence 45778888777 55567999999999999999999999999999999999999 799999 88887652
Q ss_pred CcccChhhHHHhhcceEEecccc
Q 030515 148 DLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 148 d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
..+++++|++|.+
T Consensus 78 ----------~~~~~i~~v~q~~ 90 (257)
T PRK11247 78 ----------EAREDTRLMFQDA 90 (257)
T ss_pred ----------HhhCceEEEecCc
Confidence 2346799999985
No 189
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=4.1e-16 Score=128.91 Aligned_cols=86 Identities=20% Similarity=0.201 Sum_probs=69.2
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhc---cc---CCCeEEEEECCeecc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA---LH---WRGKLTYILDGDNCR 142 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gl---lp---~~G~i~~~ldG~~v~ 142 (176)
.+++++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|+ +| ++|++ .++|+++.
T Consensus 2 ~~l~~~~~~~~------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i--~~~g~~~~ 73 (250)
T PRK14245 2 VKIDARDVNFW------YGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEI--RIDGRNIY 73 (250)
T ss_pred cEEEEEEEEEE------ECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEE--EECCEecc
Confidence 35677777776 5566799999999999999999999999999999999996 33 37999 99999875
Q ss_pred CCcccCcccChhhHHHhhcceEEecccc
Q 030515 143 HGLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 143 ~~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
.. . .+....+++++|++|++
T Consensus 74 ~~-------~-~~~~~~~~~i~~v~q~~ 93 (250)
T PRK14245 74 DK-------G-VQVDELRKNVGMVFQRP 93 (250)
T ss_pred cc-------c-ccHHHHhhheEEEecCC
Confidence 31 1 12345566799999985
No 190
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.66 E-value=4.6e-16 Score=129.59 Aligned_cols=88 Identities=25% Similarity=0.219 Sum_probs=69.9
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cC---CCeEEEEECCeeccCCc
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HW---RGKLTYILDGDNCRHGL 145 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~---~G~i~~~ldG~~v~~~~ 145 (176)
+++++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|++ |+ +|++ +++|+++...
T Consensus 4 ~l~~~nl~~~------~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i--~~~g~~~~~~- 74 (262)
T PRK09984 4 IIRVEKLAKT------FNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHI--ELLGRTVQRE- 74 (262)
T ss_pred EEEEeeEEEE------eCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEE--EECCEecccc-
Confidence 5677777776 55668999999999999999999999999999999999998 65 4999 9999987531
Q ss_pred ccCcccChhhHHHhhcceEEecccc
Q 030515 146 NRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 146 ~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
.....+....+++++|+||++
T Consensus 75 ----~~~~~~~~~~~~~i~~~~q~~ 95 (262)
T PRK09984 75 ----GRLARDIRKSRANTGYIFQQF 95 (262)
T ss_pred ----cccchhHHHHHhheEEEcccc
Confidence 000123344567799999986
No 191
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=3.1e-16 Score=130.74 Aligned_cols=77 Identities=23% Similarity=0.244 Sum_probs=64.8
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
++++++.+. |+...+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|+++...
T Consensus 2 l~~~~l~~~------~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~~~~~----- 68 (255)
T PRK11248 2 LQISHLYAD------YGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSI--TLDGKPVEGP----- 68 (255)
T ss_pred EEEEEEEEE------eCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE--EECCEECCCC-----
Confidence 456666666 55567999999999999999999999999999999999998 799999 9999987421
Q ss_pred ccChhhHHHhhcceEEecccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f 170 (176)
..+++|++|.+
T Consensus 69 ----------~~~~~~v~q~~ 79 (255)
T PRK11248 69 ----------GAERGVVFQNE 79 (255)
T ss_pred ----------CCcEEEEeCCC
Confidence 13589999985
No 192
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=4.1e-16 Score=128.78 Aligned_cols=85 Identities=28% Similarity=0.343 Sum_probs=68.7
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cC-----CCeEEEEECCeeccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HW-----RGKLTYILDGDNCRH 143 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~-----~G~i~~~ldG~~v~~ 143 (176)
+++++++.+. |+...+++++||++++|++++|+|+||||||||+++|+|++ |+ +|++ .++|+++..
T Consensus 4 ~l~~~~l~~~------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i--~~~g~~~~~ 75 (252)
T PRK14272 4 LLSAQDVNIY------YGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRI--LLDGQDIYG 75 (252)
T ss_pred EEEEeeeEEE------ECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeE--EECCEEccc
Confidence 4667777776 55567999999999999999999999999999999999998 53 7999 999998753
Q ss_pred CcccCcccChhhHHHhhcceEEecccc
Q 030515 144 GLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 144 ~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
. . ......+++++|++|++
T Consensus 76 ~-------~-~~~~~~~~~i~~~~q~~ 94 (252)
T PRK14272 76 P-------R-VDPVAMRRRVGMVFQKP 94 (252)
T ss_pred C-------c-cCHHHhhceeEEEeccC
Confidence 1 0 12234456799999986
No 193
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.66 E-value=4.6e-16 Score=128.48 Aligned_cols=85 Identities=26% Similarity=0.280 Sum_probs=68.7
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc---c---CCCeEEEEECCeeccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL---H---WRGKLTYILDGDNCRH 143 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll---p---~~G~i~~~ldG~~v~~ 143 (176)
+++++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|+. | ++|+| .++|+++..
T Consensus 5 ~l~~~~l~~~------~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i--~~~g~~~~~ 76 (252)
T PRK14239 5 ILQVSDLSVY------YNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSI--VYNGHNIYS 76 (252)
T ss_pred eEEEEeeEEE------ECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceE--EECCEECcC
Confidence 5677777776 55567999999999999999999999999999999999984 4 38999 999998853
Q ss_pred CcccCcccChhhHHHhhcceEEecccc
Q 030515 144 GLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 144 ~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
. ..+....+++++||+|++
T Consensus 77 ~--------~~~~~~~~~~i~~v~q~~ 95 (252)
T PRK14239 77 P--------RTDTVDLRKEIGMVFQQP 95 (252)
T ss_pred c--------ccchHhhhhcEEEEecCC
Confidence 1 112334456799999986
No 194
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=3.1e-16 Score=128.22 Aligned_cols=71 Identities=27% Similarity=0.236 Sum_probs=61.8
Q ss_pred cccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceEEe
Q 030515 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGSV 166 (176)
Q Consensus 88 ~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig~V 166 (176)
...+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|+++.. .+....++.++|+
T Consensus 13 ~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v--~~~g~~~~~----------~~~~~~~~~i~~~ 80 (236)
T cd03253 13 GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI--LIDGQDIRE----------VTLDSLRRAIGVV 80 (236)
T ss_pred CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEE--EECCEEhhh----------CCHHHHHhhEEEE
Confidence 356899999999999999999999999999999999999 799999 999998853 1333455679999
Q ss_pred cccc
Q 030515 167 FVLS 170 (176)
Q Consensus 167 ~Q~f 170 (176)
+|++
T Consensus 81 ~q~~ 84 (236)
T cd03253 81 PQDT 84 (236)
T ss_pred CCCC
Confidence 9986
No 195
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.65 E-value=4.2e-16 Score=129.71 Aligned_cols=83 Identities=18% Similarity=0.195 Sum_probs=69.0
Q ss_pred EEEeccceeeeccccccCc--ccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcc
Q 030515 70 LCQNSTVAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLN 146 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~--~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~ 146 (176)
.++++++... |+. ..+++++||++++|++++|+|+||||||||+++|+|++ |.+|++ .++|+++...
T Consensus 19 ~i~~~~l~~~------~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i--~i~g~~i~~~-- 88 (257)
T cd03288 19 EIKIHDLCVR------YENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKI--VIDGIDISKL-- 88 (257)
T ss_pred eEEEEEEEEE------eCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeE--EECCEEhhhC--
Confidence 4666666666 433 46899999999999999999999999999999999998 799999 9999988542
Q ss_pred cCcccChhhHHHhhcceEEecccc
Q 030515 147 RDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 147 ~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
.....+++|+|++|++
T Consensus 89 --------~~~~~~~~i~~v~q~~ 104 (257)
T cd03288 89 --------PLHTLRSRLSIILQDP 104 (257)
T ss_pred --------CHHHHhhhEEEECCCC
Confidence 3344567899999986
No 196
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.65 E-value=4.5e-16 Score=130.12 Aligned_cols=86 Identities=27% Similarity=0.245 Sum_probs=69.9
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-c-----CCCeEEEEECCeecc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-H-----WRGKLTYILDGDNCR 142 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p-----~~G~i~~~ldG~~v~ 142 (176)
.+++++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|++ | ++|++ .++|+++.
T Consensus 9 ~~l~i~~v~~~------~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i--~~~g~~i~ 80 (264)
T PRK14243 9 TVLRTENLNVY------YGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKV--TFHGKNLY 80 (264)
T ss_pred eEEEEeeeEEE------ECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEE--EECCEEcc
Confidence 35778888777 55567999999999999999999999999999999999986 2 68999 99998874
Q ss_pred CCcccCcccChhhHHHhhcceEEecccc
Q 030515 143 HGLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 143 ~~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
.. ..+..+.+++|+|++|++
T Consensus 81 ~~--------~~~~~~~~~~i~~v~q~~ 100 (264)
T PRK14243 81 AP--------DVDPVEVRRRIGMVFQKP 100 (264)
T ss_pred cc--------ccChHHHhhhEEEEccCC
Confidence 21 112334567899999985
No 197
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.65 E-value=2.9e-16 Score=127.75 Aligned_cols=86 Identities=20% Similarity=0.152 Sum_probs=69.0
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
+++++++.+.|+-. +...+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|+++...
T Consensus 11 ~l~~~~l~~~~~~~---~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i--~~~g~~~~~~---- 81 (226)
T cd03248 11 IVKFQNVTFAYPTR---PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQV--LLDGKPISQY---- 81 (226)
T ss_pred eEEEEEEEEEeCCC---CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEE--EECCCchHHc----
Confidence 46677777774211 1246899999999999999999999999999999999999 799999 9999887431
Q ss_pred cccChhhHHHhhcceEEecccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f 170 (176)
.....+++++|++|.+
T Consensus 82 ------~~~~~~~~i~~~~q~~ 97 (226)
T cd03248 82 ------EHKYLHSKVSLVGQEP 97 (226)
T ss_pred ------CHHHHHhhEEEEeccc
Confidence 2234456799999986
No 198
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=4.2e-16 Score=129.75 Aligned_cols=86 Identities=22% Similarity=0.156 Sum_probs=69.6
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhccc------CCCeEEEEECCeecc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH------WRGKLTYILDGDNCR 142 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp------~~G~i~~~ldG~~v~ 142 (176)
.+++++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|+++ ++|++ .++|+++.
T Consensus 6 ~~l~~~~l~~~------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i--~~~g~~i~ 77 (259)
T PRK14260 6 PAIKVKDLSFY------YNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVV--DFFGQNIY 77 (259)
T ss_pred ceEEEEEEEEE------ECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEE--EECCEecc
Confidence 35677777776 555679999999999999999999999999999999999983 37999 99999874
Q ss_pred CCcccCcccChhhHHHhhcceEEecccc
Q 030515 143 HGLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 143 ~~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
.. .......+++|+|++|++
T Consensus 78 ~~--------~~~~~~~~~~i~~v~q~~ 97 (259)
T PRK14260 78 DP--------RININRLRRQIGMVFQRP 97 (259)
T ss_pred cc--------ccchHhhhhheEEEeccc
Confidence 31 123344566899999986
No 199
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.65 E-value=4.1e-16 Score=126.72 Aligned_cols=91 Identities=20% Similarity=0.258 Sum_probs=66.7
Q ss_pred EEeccceeeeccccccC-cccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEEC--Ce--eccCC
Q 030515 71 CQNSTVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILD--GD--NCRHG 144 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~-~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ld--G~--~v~~~ 144 (176)
++++++.+.|+.....+ ...+++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++ |+ ++...
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i--~~~~~g~~~~~~~~ 79 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRI--LVRHEGAWVDLAQA 79 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeE--EEecCCCccchhhc
Confidence 56677777743210001 247899999999999999999999999999999999998 799999 887 43 33221
Q ss_pred cccCcccChhhHHHhh-cceEEecccc
Q 030515 145 LNRDLSFKAEDRVENI-RRIGSVFVLS 170 (176)
Q Consensus 145 ~~~d~~~~~~~~~~~r-rrig~V~Q~f 170 (176)
+.....+.+ ++++|++|++
T Consensus 80 -------~~~~~~~~~~~~i~~~~q~~ 99 (224)
T TIGR02324 80 -------SPREVLEVRRKTIGYVSQFL 99 (224)
T ss_pred -------CHHHHHHHHhcceEEEeccc
Confidence 223333444 5699999986
No 200
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.65 E-value=4.2e-16 Score=125.33 Aligned_cols=81 Identities=22% Similarity=0.191 Sum_probs=65.3
Q ss_pred eccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhc--c-cCCCeEEEEECCeeccCCcccCc
Q 030515 73 NSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA--L-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gl--l-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|+ + |++|++ .++|+++...
T Consensus 3 ~~~l~~~------~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i--~~~g~~~~~~----- 69 (200)
T cd03217 3 IKDLHVS------VGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEI--LFKGEDITDL----- 69 (200)
T ss_pred EEEEEEE------eCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEE--EECCEECCcC-----
Confidence 4555555 4456799999999999999999999999999999999998 4 799999 9999988642
Q ss_pred ccChhhHHHhhcceEEecccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f 170 (176)
+ .....+++++|++|.+
T Consensus 70 --~--~~~~~~~~i~~v~q~~ 86 (200)
T cd03217 70 --P--PEERARLGIFLAFQYP 86 (200)
T ss_pred --C--HHHHhhCcEEEeecCh
Confidence 1 1112234699999985
No 201
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.65 E-value=1.6e-16 Score=125.75 Aligned_cols=71 Identities=30% Similarity=0.313 Sum_probs=60.2
Q ss_pred cCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceE
Q 030515 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIG 164 (176)
Q Consensus 86 ~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig 164 (176)
|+...+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|+++... .....+++++
T Consensus 9 ~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v--~~~g~~~~~~----------~~~~~~~~i~ 76 (180)
T cd03214 9 YGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEI--LLDGKDLASL----------SPKELARKIA 76 (180)
T ss_pred ECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE--EECCEECCcC----------CHHHHHHHHh
Confidence 45557999999999999999999999999999999999999 799999 9999988542 2223445688
Q ss_pred Eecc
Q 030515 165 SVFV 168 (176)
Q Consensus 165 ~V~Q 168 (176)
|++|
T Consensus 77 ~~~q 80 (180)
T cd03214 77 YVPQ 80 (180)
T ss_pred HHHH
Confidence 8887
No 202
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=5.1e-16 Score=131.37 Aligned_cols=92 Identities=21% Similarity=0.181 Sum_probs=68.8
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
++++++.+.|+-.- .....+++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|.++.....
T Consensus 7 l~i~nl~~~~~~~~-~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~i~~~~~--- 80 (289)
T PRK13645 7 IILDNVSYTYAKKT-PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQT--IVGDYAIPANLK--- 80 (289)
T ss_pred EEEEEEEEEeCCCC-ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE--EECCEEcccccc---
Confidence 56777777742100 00135899999999999999999999999999999999999 799999 999988742100
Q ss_pred ccChhhHHHhhcceEEecccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f 170 (176)
+..+....+++|+|++|.+
T Consensus 81 --~~~~~~~~~~~i~~v~q~~ 99 (289)
T PRK13645 81 --KIKEVKRLRKEIGLVFQFP 99 (289)
T ss_pred --ccccHHHHhccEEEEEeCc
Confidence 0112344566799999985
No 203
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=5.2e-16 Score=131.48 Aligned_cols=88 Identities=24% Similarity=0.244 Sum_probs=70.5
Q ss_pred CCcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc---c---CCCeEEEEECCee
Q 030515 67 GNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL---H---WRGKLTYILDGDN 140 (176)
Q Consensus 67 g~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll---p---~~G~i~~~ldG~~ 140 (176)
+..+++++++.+. |+...+++++||++.+||+++|+|+||||||||+++|.|++ | ++|+| .++|++
T Consensus 36 ~~~~l~~~~l~~~------~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I--~~~g~~ 107 (286)
T PRK14275 36 GKPHVVAKNFSIY------YGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGAL--MFDGED 107 (286)
T ss_pred CceEEEEeeeEEE------ECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEE--EECCEE
Confidence 4556778777776 55557999999999999999999999999999999999974 3 89999 999998
Q ss_pred ccCCcccCcccChhhHHHhhcceEEecccc
Q 030515 141 CRHGLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 141 v~~~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
+... . ......+++++||+|++
T Consensus 108 i~~~-------~-~~~~~~~~~i~~v~q~~ 129 (286)
T PRK14275 108 IYGK-------F-TDEVLLRKKIGMVFQKP 129 (286)
T ss_pred hhhc-------c-cchHHhhhcEEEECCCC
Confidence 7431 0 12224556799999986
No 204
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.65 E-value=5.4e-16 Score=125.17 Aligned_cols=80 Identities=20% Similarity=0.188 Sum_probs=66.8
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
+++++++.+. |+...+++++||++++||+++|+|+||||||||+++|.|++ |++|++ .++|+++..
T Consensus 2 ~l~~~~l~~~------~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~~~~----- 68 (207)
T PRK13539 2 MLEGEDLACV------RGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTI--KLDGGDIDD----- 68 (207)
T ss_pred EEEEEeEEEE------ECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE--EECCEeCcc-----
Confidence 4667777777 55557899999999999999999999999999999999998 799999 899987631
Q ss_pred cccChhhHHHhhcceEEecccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f 170 (176)
.. .++++++++|..
T Consensus 69 -----~~---~~~~~~~~~~~~ 82 (207)
T PRK13539 69 -----PD---VAEACHYLGHRN 82 (207)
T ss_pred -----hh---hHhhcEEecCCC
Confidence 11 456799999864
No 205
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.65 E-value=4.1e-16 Score=127.78 Aligned_cols=70 Identities=27% Similarity=0.251 Sum_probs=60.3
Q ss_pred ccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceEEec
Q 030515 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGSVF 167 (176)
Q Consensus 89 ~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig~V~ 167 (176)
..+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|.++... .....+++++|++
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i--~~~g~~~~~~----------~~~~~~~~i~~~~ 83 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI--LLDGVDIRDL----------NLRWLRSQIGLVS 83 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEE--EECCEehhhc----------CHHHHHhhEEEEC
Confidence 46899999999999999999999999999999999998 799999 9999887431 2233456799999
Q ss_pred ccc
Q 030515 168 VLS 170 (176)
Q Consensus 168 Q~f 170 (176)
|++
T Consensus 84 q~~ 86 (238)
T cd03249 84 QEP 86 (238)
T ss_pred Cch
Confidence 985
No 206
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.65 E-value=6.3e-16 Score=129.79 Aligned_cols=86 Identities=26% Similarity=0.231 Sum_probs=70.1
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhccc------CCCeEEEEECCeecc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH------WRGKLTYILDGDNCR 142 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp------~~G~i~~~ldG~~v~ 142 (176)
.+++++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|+++ ++|++ .++|+++.
T Consensus 24 ~~l~~~nl~~~------~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i--~i~g~~i~ 95 (272)
T PRK14236 24 TALEVRNLNLF------YGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEI--RLDGQNIY 95 (272)
T ss_pred cEEEEEEEEEE------ECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEE--EECCEECc
Confidence 35777777777 455579999999999999999999999999999999999973 68999 99999875
Q ss_pred CCcccCcccChhhHHHhhcceEEecccc
Q 030515 143 HGLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 143 ~~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
.. .......+++++|++|.+
T Consensus 96 ~~--------~~~~~~~~~~i~~v~q~~ 115 (272)
T PRK14236 96 DK--------KVDVAELRRRVGMVFQRP 115 (272)
T ss_pred cc--------ccCHHHHhccEEEEecCC
Confidence 31 122334567899999985
No 207
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.65 E-value=5.5e-16 Score=140.13 Aligned_cols=84 Identities=21% Similarity=0.236 Sum_probs=70.5
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
+++++++.+. |+...+++++||++++|++++|+|+||||||||+++|+|++ |++|+| .++|+++...
T Consensus 4 ~l~~~~l~~~------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I--~~~g~~i~~~---- 71 (501)
T PRK11288 4 YLSFDGIGKT------FPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSI--LIDGQEMRFA---- 71 (501)
T ss_pred eEEEeeeEEE------ECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEE--EECCEECCCC----
Confidence 5778888777 55567999999999999999999999999999999999998 799999 9999988531
Q ss_pred cccChhhHHHhhcceEEecccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f 170 (176)
......+++|+||+|++
T Consensus 72 -----~~~~~~~~~i~~v~q~~ 88 (501)
T PRK11288 72 -----STTAALAAGVAIIYQEL 88 (501)
T ss_pred -----CHHHHHhCCEEEEEech
Confidence 12234456799999975
No 208
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.65 E-value=5.9e-16 Score=125.53 Aligned_cols=83 Identities=22% Similarity=0.255 Sum_probs=69.9
Q ss_pred CCcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCc
Q 030515 67 GNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGL 145 (176)
Q Consensus 67 g~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~ 145 (176)
+..+++++++.+. |+...+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|+++..
T Consensus 8 ~~~~l~~~~l~~~------~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i--~~~g~~i~~-- 77 (214)
T PRK13543 8 APPLLAAHALAFS------RNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQI--QIDGKTATR-- 77 (214)
T ss_pred CcceEEEeeEEEe------cCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeE--EECCEEccc--
Confidence 3456888888877 55567999999999999999999999999999999999998 799999 999988742
Q ss_pred ccCcccChhhHHHhhcceEEecccc
Q 030515 146 NRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 146 ~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
. ..++.++|++|.+
T Consensus 78 --------~---~~~~~i~~~~q~~ 91 (214)
T PRK13543 78 --------G---DRSRFMAYLGHLP 91 (214)
T ss_pred --------h---hhhhceEEeecCc
Confidence 1 2235699999975
No 209
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=5.1e-16 Score=128.36 Aligned_cols=87 Identities=22% Similarity=0.251 Sum_probs=70.8
Q ss_pred cEEEeccceeeeccccccCc-ccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc---cCCCeEEEEECCeeccCC
Q 030515 69 NLCQNSTVAKSTNILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL---HWRGKLTYILDGDNCRHG 144 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~-~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll---p~~G~i~~~ldG~~v~~~ 144 (176)
.+++++++..+ -.. +.+|+++||++++||+.+||||||||||||+++|+|.- ++.|+| .+||++|..+
T Consensus 2 ~~L~I~dLhv~------v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I--~~~GedI~~l 73 (251)
T COG0396 2 MMLEIKDLHVE------VEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEI--LFDGEDILEL 73 (251)
T ss_pred ceeEEeeeEEE------ecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceE--EECCcccccC
Confidence 45667666555 445 59999999999999999999999999999999999986 589999 9999999875
Q ss_pred cccCcccChhhHHHhhcceEEecccccc
Q 030515 145 LNRDLSFKAEDRVENIRRIGSVFVLSIH 172 (176)
Q Consensus 145 ~~~d~~~~~~~~~~~rrrig~V~Q~f~~ 172 (176)
+..++ .|..|.+-||.++.
T Consensus 74 -------~~~ER--Ar~GifLafQ~P~e 92 (251)
T COG0396 74 -------SPDER--ARAGIFLAFQYPVE 92 (251)
T ss_pred -------CHhHH--HhcCCEEeecCCcc
Confidence 33333 23569999998753
No 210
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=6.2e-16 Score=128.06 Aligned_cols=86 Identities=23% Similarity=0.241 Sum_probs=69.3
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-c-----CCCeEEEEECCeecc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-H-----WRGKLTYILDGDNCR 142 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p-----~~G~i~~~ldG~~v~ 142 (176)
++++++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|++ + ++|++ .++|+++.
T Consensus 5 ~~i~~~~l~~~------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i--~~~g~~~~ 76 (253)
T PRK14261 5 IILSTKNLNLW------YGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDI--LYNGENIM 76 (253)
T ss_pred ceEEEeeeEEE------ECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEE--EECCEEcc
Confidence 35777777776 55567999999999999999999999999999999999986 2 37999 99999885
Q ss_pred CCcccCcccChhhHHHhhcceEEecccc
Q 030515 143 HGLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 143 ~~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
.. . ......+++++|++|.+
T Consensus 77 ~~-------~-~~~~~~~~~i~~~~q~~ 96 (253)
T PRK14261 77 DS-------G-ADVVALRRKIGMVFQRP 96 (253)
T ss_pred cc-------c-cchhhhhceEEEEecCC
Confidence 31 0 12334556799999986
No 211
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.64 E-value=6.3e-16 Score=140.22 Aligned_cols=84 Identities=21% Similarity=0.190 Sum_probs=69.8
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
+++++++.+. |+...+++++||++++|++++|+|+||||||||+++|+|++ |++|+| .++|+++...
T Consensus 11 ~l~~~~l~~~------~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~~~~~---- 78 (510)
T PRK15439 11 LLCARSISKQ------YSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTL--EIGGNPCARL---- 78 (510)
T ss_pred eEEEEeEEEE------eCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EECCEECCCC----
Confidence 5778888777 55667999999999999999999999999999999999999 799999 9999988542
Q ss_pred cccChhhHHHhhcceEEecccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f 170 (176)
+. ....++.++||+|++
T Consensus 79 ---~~--~~~~~~~i~~v~q~~ 95 (510)
T PRK15439 79 ---TP--AKAHQLGIYLVPQEP 95 (510)
T ss_pred ---CH--HHHHhCCEEEEeccC
Confidence 11 112234699999986
No 212
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.64 E-value=3.6e-16 Score=140.74 Aligned_cols=84 Identities=19% Similarity=0.074 Sum_probs=69.1
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCccc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNR 147 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~ 147 (176)
.+++++++.+. |+...+++++||++++|++++|+|+||||||||+|+|+|++ |++|++ .++|.++...
T Consensus 2 ~~l~~~~l~~~------~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i--~~~~~~~~~~--- 70 (490)
T PRK10938 2 SSLQISQGTFR------LSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGER--QSQFSHITRL--- 70 (490)
T ss_pred ceEEEEeEEEE------cCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceE--EECCcccccC---
Confidence 35778888777 55567999999999999999999999999999999999998 799999 8888776431
Q ss_pred CcccChhhHHHhhcceEEecccc
Q 030515 148 DLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 148 d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
.....++++++++|.+
T Consensus 71 -------~~~~~~~~i~~~~q~~ 86 (490)
T PRK10938 71 -------SFEQLQKLVSDEWQRN 86 (490)
T ss_pred -------CHHHHHHHhceeccCc
Confidence 2223445699999975
No 213
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=6.4e-16 Score=139.85 Aligned_cols=85 Identities=25% Similarity=0.354 Sum_probs=70.0
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-c--CCCeEEEEECCeeccCCc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-H--WRGKLTYILDGDNCRHGL 145 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p--~~G~i~~~ldG~~v~~~~ 145 (176)
.+++++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|++ | ++|+| .++|+++...
T Consensus 4 ~~l~~~nl~~~------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i--~~~g~~~~~~- 74 (506)
T PRK13549 4 YLLEMKNITKT------FGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEI--IFEGEELQAS- 74 (506)
T ss_pred ceEEEeeeEEE------eCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEE--EECCEECCCC-
Confidence 35778888777 55667999999999999999999999999999999999998 4 69999 9999988532
Q ss_pred ccCcccChhhHHHhhcceEEecccc
Q 030515 146 NRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 146 ~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
......+++++||+|.+
T Consensus 75 --------~~~~~~~~~i~~v~q~~ 91 (506)
T PRK13549 75 --------NIRDTERAGIAIIHQEL 91 (506)
T ss_pred --------CHHHHHHCCeEEEEecc
Confidence 11122346799999985
No 214
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=8.2e-16 Score=131.43 Aligned_cols=88 Identities=23% Similarity=0.248 Sum_probs=71.6
Q ss_pred CCcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc------cCCCeEEEEECCee
Q 030515 67 GNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL------HWRGKLTYILDGDN 140 (176)
Q Consensus 67 g~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll------p~~G~i~~~ldG~~ 140 (176)
+..++.++++.+. |+...+++++||++.+|++++|+|+||||||||+++|+|++ |++|++ .++|.+
T Consensus 42 ~~~~l~i~nl~~~------~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I--~i~g~~ 113 (305)
T PRK14264 42 GDAKLSVEDLDVY------YGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSV--ELDGQD 113 (305)
T ss_pred CCceEEEEEEEEE------eCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE--EECCEE
Confidence 3446777777776 55567999999999999999999999999999999999997 378999 999998
Q ss_pred ccCCcccCcccChhhHHHhhcceEEecccc
Q 030515 141 CRHGLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 141 v~~~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
+... .......+++++|++|.+
T Consensus 114 i~~~--------~~~~~~~~~~i~~v~q~~ 135 (305)
T PRK14264 114 IYQD--------GVNLVELRKRVGMVFQSP 135 (305)
T ss_pred cccc--------cccHHHHhhceEEEccCC
Confidence 7531 112345567899999986
No 215
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.64 E-value=5.7e-16 Score=127.50 Aligned_cols=82 Identities=22% Similarity=0.131 Sum_probs=66.3
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc---cCCCeEEEEECCeeccCCccc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL---HWRGKLTYILDGDNCRHGLNR 147 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll---p~~G~i~~~ldG~~v~~~~~~ 147 (176)
++++++.+. |+...+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|+++...
T Consensus 2 i~~~nl~~~------~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i--~~~g~~~~~~--- 70 (248)
T PRK09580 2 LSIKDLHVS------VEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTV--EFKGKDLLEL--- 70 (248)
T ss_pred eEEEEEEEE------eCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEE--EECCCccccC---
Confidence 456666666 55567999999999999999999999999999999999994 689999 9999887532
Q ss_pred CcccChhhHHHh-hcceEEecccc
Q 030515 148 DLSFKAEDRVEN-IRRIGSVFVLS 170 (176)
Q Consensus 148 d~~~~~~~~~~~-rrrig~V~Q~f 170 (176)
+.... ++.++|++|++
T Consensus 71 -------~~~~~~~~~i~~~~q~~ 87 (248)
T PRK09580 71 -------SPEDRAGEGIFMAFQYP 87 (248)
T ss_pred -------CHHHHhhcceEEEecCc
Confidence 22222 34699999985
No 216
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.64 E-value=5.7e-16 Score=142.07 Aligned_cols=86 Identities=21% Similarity=0.195 Sum_probs=72.0
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeeccCCcccCcc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLS 150 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~~~~~~d~~ 150 (176)
+++++++..+ +.+..+++++||++++|+.++|+|+||||||||+++|.|++|++|+| .+||.++..
T Consensus 350 i~~~~vsf~~-----~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I--~i~g~~i~~------- 415 (588)
T PRK11174 350 IEAEDLEILS-----PDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSL--KINGIELRE------- 415 (588)
T ss_pred EEEEeeEEec-----cCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCcEE--EECCEeccc-------
Confidence 5555554322 34567999999999999999999999999999999999999999999 999999965
Q ss_pred cChhhHHHhhcceEEecccccccc
Q 030515 151 FKAEDRVENIRRIGSVFVLSIHLF 174 (176)
Q Consensus 151 ~~~~~~~~~rrrig~V~Q~f~~lf 174 (176)
.+...+|++|+||+|++ .+|
T Consensus 416 ---~~~~~lr~~i~~v~Q~~-~LF 435 (588)
T PRK11174 416 ---LDPESWRKHLSWVGQNP-QLP 435 (588)
T ss_pred ---CCHHHHHhheEEecCCC-cCC
Confidence 35667788999999986 555
No 217
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.64 E-value=5.1e-16 Score=127.74 Aligned_cols=70 Identities=29% Similarity=0.326 Sum_probs=60.2
Q ss_pred cCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceE
Q 030515 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIG 164 (176)
Q Consensus 86 ~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig 164 (176)
|+..++++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|+++.. .....+++++
T Consensus 31 ~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i--~~~g~~~~~-----------~~~~~~~~i~ 97 (236)
T cd03267 31 YREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEV--RVAGLVPWK-----------RRKKFLRRIG 97 (236)
T ss_pred cCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEE--EECCEEccc-----------cchhhcccEE
Confidence 67778999999999999999999999999999999999998 799999 999987532 1123456799
Q ss_pred Eecc
Q 030515 165 SVFV 168 (176)
Q Consensus 165 ~V~Q 168 (176)
|++|
T Consensus 98 ~~~~ 101 (236)
T cd03267 98 VVFG 101 (236)
T ss_pred EEcC
Confidence 9984
No 218
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=9.5e-16 Score=128.20 Aligned_cols=86 Identities=21% Similarity=0.160 Sum_probs=68.8
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-c-----CCCeEEEEECCeecc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-H-----WRGKLTYILDGDNCR 142 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p-----~~G~i~~~ldG~~v~ 142 (176)
+.+.++..... |+...+++++||++++|++++|+|+||||||||+++|+|++ | .+|++ .++|+++.
T Consensus 7 ~~~~~~~~~~~------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i--~~~g~~i~ 78 (261)
T PRK14263 7 IVMDCKLDKIF------YGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHV--HFLGQDVY 78 (261)
T ss_pred ceEEEEeEEEE------eCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEE--EECCEecc
Confidence 34555555555 66778999999999999999999999999999999999998 4 68999 99999874
Q ss_pred CCcccCcccChhhHHHhhcceEEecccc
Q 030515 143 HGLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 143 ~~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
.. + ......++++++++|++
T Consensus 79 ~~-------~-~~~~~~~~~i~~v~q~~ 98 (261)
T PRK14263 79 GK-------G-VDPVVVRRYIGMVFQQP 98 (261)
T ss_pred cc-------c-cchHhhhhceEEEecCC
Confidence 31 1 12234556799999986
No 219
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.64 E-value=5.9e-16 Score=144.58 Aligned_cols=87 Identities=26% Similarity=0.213 Sum_probs=73.0
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
++++++...|.. .+..+++++||++++||.++|+|+||||||||+++|.|+. |++|+| .+||.++..
T Consensus 452 I~~~nvsf~Y~~----~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I--~idg~~i~~------ 519 (686)
T TIGR03797 452 IEVDRVTFRYRP----DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSV--FYDGQDLAG------ 519 (686)
T ss_pred EEEEEEEEEcCC----CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE--EECCEEcCc------
Confidence 556666655321 2357999999999999999999999999999999999999 899999 999999965
Q ss_pred ccChhhHHHhhcceEEecccccccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLSIHLF 174 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f~~lf 174 (176)
.+..++|++|++|+|++ .+|
T Consensus 520 ----~~~~~lr~~i~~v~Q~~-~lf 539 (686)
T TIGR03797 520 ----LDVQAVRRQLGVVLQNG-RLM 539 (686)
T ss_pred ----CCHHHHHhccEEEccCC-ccC
Confidence 36667888999999986 444
No 220
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.64 E-value=6.4e-16 Score=140.56 Aligned_cols=95 Identities=21% Similarity=0.191 Sum_probs=73.9
Q ss_pred CCcEEEeccceeeecccc-----ccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeec
Q 030515 67 GNNLCQNSTVAKSTNILW-----HKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (176)
Q Consensus 67 g~~~~~~~~~~~~~~~~~-----~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v 141 (176)
+..+++++++.+.|...- ..+...+++++||++++|++++|+|+||||||||+++|+|++|++|+| +++|+++
T Consensus 272 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i--~~~g~~i 349 (529)
T PRK15134 272 ASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEI--WFDGQPL 349 (529)
T ss_pred CCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEE--EECCEEc
Confidence 344688888888752100 002357899999999999999999999999999999999999989999 9999988
Q ss_pred cCCcccCcccChhhHHHhhcceEEecccc
Q 030515 142 RHGLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 142 ~~~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
... +..++...+++|+||+|++
T Consensus 350 ~~~-------~~~~~~~~~~~i~~v~q~~ 371 (529)
T PRK15134 350 HNL-------NRRQLLPVRHRIQVVFQDP 371 (529)
T ss_pred ccc-------chhhHHHhhhceEEEEeCc
Confidence 542 2233334456799999986
No 221
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.63 E-value=5e-17 Score=132.36 Aligned_cols=88 Identities=19% Similarity=0.198 Sum_probs=74.1
Q ss_pred CcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcc
Q 030515 68 NNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLN 146 (176)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~ 146 (176)
|..+.++++.|+ |+...+++++||++++||+++++||||+||||.+.++.|++ |++|+| ++|+.+++++
T Consensus 2 ~~~L~a~~l~K~------y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i--~ld~~diT~l-- 71 (243)
T COG1137 2 MSTLVAENLAKS------YKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKI--LLDDEDITKL-- 71 (243)
T ss_pred CcEEEehhhhHh------hCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceE--EECCcccccC--
Confidence 345667777777 88889999999999999999999999999999999999999 899999 9999999864
Q ss_pred cCcccChhhHHHh-hcceEEecccccccc
Q 030515 147 RDLSFKAEDRVEN-IRRIGSVFVLSIHLF 174 (176)
Q Consensus 147 ~d~~~~~~~~~~~-rrrig~V~Q~f~~lf 174 (176)
.+... |..|||++|.. ..|
T Consensus 72 --------Pm~~RArlGigYLpQE~-SIF 91 (243)
T COG1137 72 --------PMHKRARLGIGYLPQEA-SIF 91 (243)
T ss_pred --------ChHHHhhcCcccccccc-hHh
Confidence 33332 34699999985 444
No 222
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.63 E-value=1e-15 Score=139.20 Aligned_cols=91 Identities=19% Similarity=0.200 Sum_probs=71.5
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-c-----CCCeEEEEECCeecc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-H-----WRGKLTYILDGDNCR 142 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p-----~~G~i~~~ldG~~v~ 142 (176)
++++++++.+.|+-. .+...+++++||++++||+++|+|+||||||||+++|+|++ | ++|++ .++|+++.
T Consensus 4 ~~l~~~~l~~~~~~~--~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i--~~~g~~i~ 79 (529)
T PRK15134 4 PLLAIENLSVAFRQQ--QTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDI--RFHGESLL 79 (529)
T ss_pred ceEEEeceEEEecCC--CCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEE--EECCEecc
Confidence 367888888874210 01257999999999999999999999999999999999999 4 58999 99999986
Q ss_pred CCcccCcccChhhHHHhh-cceEEecccc
Q 030515 143 HGLNRDLSFKAEDRVENI-RRIGSVFVLS 170 (176)
Q Consensus 143 ~~~~~d~~~~~~~~~~~r-rrig~V~Q~f 170 (176)
.. +..++...+ ++||||||++
T Consensus 80 ~~-------~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 80 HA-------SEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred cC-------CHHHHHHHhcCceEEEecCc
Confidence 42 223334444 4799999985
No 223
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.63 E-value=2.4e-16 Score=128.51 Aligned_cols=79 Identities=25% Similarity=0.323 Sum_probs=67.9
Q ss_pred EEEeccceeeeccccccCccc-ceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCccc
Q 030515 70 LCQNSTVAKSTNILWHKNSVD-KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNR 147 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~-~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~ 147 (176)
|+++.+++|+ |++.. +++|+||++++|++++|+|||||||||++|+|+.++ |++|.+ ++||-+..+
T Consensus 1 Ml~v~~l~K~------y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v--~idg~d~~~---- 68 (245)
T COG4555 1 MLEVTDLTKS------YGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV--TIDGVDTVR---- 68 (245)
T ss_pred Ceeeeehhhh------ccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceE--EEeeccccc----
Confidence 3567777787 56554 999999999999999999999999999999999999 999999 999988753
Q ss_pred CcccChhhHHHhhcceEEec
Q 030515 148 DLSFKAEDRVENIRRIGSVF 167 (176)
Q Consensus 148 d~~~~~~~~~~~rrrig~V~ 167 (176)
+....||+||.+|
T Consensus 69 -------~p~~vrr~IGVl~ 81 (245)
T COG4555 69 -------DPSFVRRKIGVLF 81 (245)
T ss_pred -------ChHHHhhhcceec
Confidence 4455677888887
No 224
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=1.2e-15 Score=123.05 Aligned_cols=85 Identities=18% Similarity=0.096 Sum_probs=69.6
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhccc----CCCeEEEEECCeeccCCcc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH----WRGKLTYILDGDNCRHGLN 146 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp----~~G~i~~~ldG~~v~~~~~ 146 (176)
+.++++.+.|+.. .+...+++++||++++||+++|+|+||||||||+++|+|+++ ++|++ .++|.++...
T Consensus 4 ~~~~~~~~~~~~~--~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i--~i~g~~~~~~-- 77 (202)
T cd03233 4 LSWRNISFTTGKG--RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDI--HYNGIPYKEF-- 77 (202)
T ss_pred EEEEccEEEeccC--CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEE--EECCEECccc--
Confidence 5577788776543 245689999999999999999999999999999999999973 68999 9999987531
Q ss_pred cCcccChhhHHHhhcceEEecccc
Q 030515 147 RDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 147 ~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
....+++++|++|+.
T Consensus 78 ---------~~~~~~~i~~~~q~~ 92 (202)
T cd03233 78 ---------AEKYPGEIIYVSEED 92 (202)
T ss_pred ---------hhhhcceEEEEeccc
Confidence 123456799999975
No 225
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.63 E-value=7.3e-16 Score=127.98 Aligned_cols=80 Identities=25% Similarity=0.250 Sum_probs=66.3
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-c----CCCeEEEEECCeeccCC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-H----WRGKLTYILDGDNCRHG 144 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p----~~G~i~~~ldG~~v~~~ 144 (176)
+++++++.+. | ...+++++||++.+||+++|+|+||||||||+++|+|++ | ++|++ +++|+++..
T Consensus 4 ~l~~~~l~~~------~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i--~~~g~~i~~- 73 (254)
T PRK10418 4 QIELRNIALQ------A-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRV--LLDGKPVAP- 73 (254)
T ss_pred EEEEeCeEEE------e-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEE--EECCeeccc-
Confidence 4667777777 4 346899999999999999999999999999999999998 7 88999 999988731
Q ss_pred cccCcccChhhHHHhhcceEEecccc
Q 030515 145 LNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 145 ~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
.+ ..++.|+||+|++
T Consensus 74 ---------~~--~~~~~i~~v~q~~ 88 (254)
T PRK10418 74 ---------CA--LRGRKIATIMQNP 88 (254)
T ss_pred ---------cc--cccceEEEEecCC
Confidence 11 1235699999985
No 226
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=7.7e-16 Score=127.34 Aligned_cols=75 Identities=25% Similarity=0.181 Sum_probs=61.9
Q ss_pred cCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhccc------CCCeEEEEECCeeccCCcccCcccChhhHHHh
Q 030515 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH------WRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN 159 (176)
Q Consensus 86 ~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp------~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~ 159 (176)
|+...+++++||++.+|++++|+|+||||||||+++|+|+.+ +.|++ .++|+++... .......
T Consensus 15 ~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i--~~~g~~i~~~--------~~~~~~~ 84 (251)
T PRK14244 15 YGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGEL--DIDGIDVYSV--------DTNVVLL 84 (251)
T ss_pred ECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEE--EECCEehHhc--------ccchHHH
Confidence 555679999999999999999999999999999999999972 58999 9999887431 1122345
Q ss_pred hcceEEecccc
Q 030515 160 IRRIGSVFVLS 170 (176)
Q Consensus 160 rrrig~V~Q~f 170 (176)
+++++|++|++
T Consensus 85 ~~~i~~v~q~~ 95 (251)
T PRK14244 85 RAKVGMVFQKP 95 (251)
T ss_pred hhhEEEEecCc
Confidence 66899999985
No 227
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.63 E-value=1e-15 Score=128.56 Aligned_cols=81 Identities=22% Similarity=0.166 Sum_probs=65.9
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
+++++++.+.|. +...+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|+++..
T Consensus 6 ~l~~~~l~~~~~-----~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~i~~----- 73 (272)
T PRK15056 6 GIVVNDVTVTWR-----NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKI--SILGQPTRQ----- 73 (272)
T ss_pred eEEEEeEEEEec-----CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EECCEEhHH-----
Confidence 466777777631 2457999999999999999999999999999999999998 799999 999988631
Q ss_pred cccChhhHHHhhcceEEecccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f 170 (176)
. ..+++++|++|++
T Consensus 74 ------~--~~~~~i~~v~q~~ 87 (272)
T PRK15056 74 ------A--LQKNLVAYVPQSE 87 (272)
T ss_pred ------h--hccceEEEecccc
Confidence 1 1123599999975
No 228
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=1.5e-15 Score=121.32 Aligned_cols=83 Identities=17% Similarity=0.164 Sum_probs=66.4
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc---cCCCeEEEEECCeeccCCcc
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL---HWRGKLTYILDGDNCRHGLN 146 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll---p~~G~i~~~ldG~~v~~~~~ 146 (176)
+++++++.+.|... .....+++++||++++|++++|+|+||||||||+++|+|+. |++|++ .++|+++.
T Consensus 3 ~l~~~~l~~~~~~~--~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i--~~~g~~~~---- 74 (192)
T cd03232 3 VLTWKNLNYTVPVK--GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEI--LINGRPLD---- 74 (192)
T ss_pred EEEEeeeEEEecCC--CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEE--EECCEehH----
Confidence 46677777764210 01257899999999999999999999999999999999974 589999 99998762
Q ss_pred cCcccChhhHHHhhcceEEecccc
Q 030515 147 RDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 147 ~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
...+++++|++|.+
T Consensus 75 ----------~~~~~~i~~~~q~~ 88 (192)
T cd03232 75 ----------KNFQRSTGYVEQQD 88 (192)
T ss_pred ----------HHhhhceEEecccC
Confidence 23456799999975
No 229
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.63 E-value=5.8e-16 Score=145.74 Aligned_cols=81 Identities=30% Similarity=0.330 Sum_probs=70.4
Q ss_pred ccccccCcc--cceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHH
Q 030515 81 NILWHKNSV--DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRV 157 (176)
Q Consensus 81 ~~~~~~~~~--~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~ 157 (176)
|+.++|+.. .+|+|+||++++||.++|+|+||||||||+|+|.|+. |+.|+| .+||.++.+ -+..
T Consensus 476 nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I--~~dg~dl~~----------i~~~ 543 (709)
T COG2274 476 NVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRI--LLDGVDLND----------IDLA 543 (709)
T ss_pred EEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE--EECCEeHHh----------cCHH
Confidence 333335543 6999999999999999999999999999999999999 999999 999999965 5888
Q ss_pred HhhcceEEecccccccc
Q 030515 158 ENIRRIGSVFVLSIHLF 174 (176)
Q Consensus 158 ~~rrrig~V~Q~f~~lf 174 (176)
.+||+||+|.|+. .+|
T Consensus 544 ~lR~~ig~V~Q~~-~Lf 559 (709)
T COG2274 544 SLRRQVGYVLQDP-FLF 559 (709)
T ss_pred HHHhheeEEcccc-hhh
Confidence 8999999999986 444
No 230
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.62 E-value=7.4e-16 Score=140.98 Aligned_cols=85 Identities=28% Similarity=0.237 Sum_probs=73.9
Q ss_pred EEeccceeeeccccccC-cccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 71 CQNSTVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~-~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
++++++.-. |+ +..+++++||++++||.++|+|+|||||||+++.|.|+. |++|+| .+||.++..
T Consensus 329 I~f~~vsf~------y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I--~idg~dI~~----- 395 (567)
T COG1132 329 IEFENVSFS------YPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEI--LIDGIDIRD----- 395 (567)
T ss_pred EEEEEEEEE------cCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeE--EECCEehhh-----
Confidence 455555554 66 678999999999999999999999999999999999999 899999 889999965
Q ss_pred cccChhhHHHhhcceEEecccccccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLSIHLF 174 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f~~lf 174 (176)
-....+|++|++|+|++ .||
T Consensus 396 -----i~~~~lr~~I~~V~Qd~-~LF 415 (567)
T COG1132 396 -----ISLDSLRKRIGIVSQDP-LLF 415 (567)
T ss_pred -----cCHHHHHHhccEEcccc-eee
Confidence 47778889999999986 555
No 231
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.62 E-value=7.7e-16 Score=124.03 Aligned_cols=63 Identities=25% Similarity=0.321 Sum_probs=55.4
Q ss_pred cceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceEEecccc
Q 030515 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 94 ~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
++||++++||+++|+|+||||||||+++|.|++ |++|++ .++|+++... . . .+++++|++|++
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i--~~~g~~~~~~-------~--~---~~~~i~~~~q~~ 79 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV--LINGVDVTAA-------P--P---ADRPVSMLFQEN 79 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE--EECCEEcCcC-------C--H---hHccEEEEeccc
Confidence 999999999999999999999999999999999 799999 9999988542 1 1 236799999986
No 232
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.62 E-value=1e-15 Score=114.84 Aligned_cols=67 Identities=34% Similarity=0.366 Sum_probs=60.7
Q ss_pred eecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceEEecccc
Q 030515 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 92 l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
|+++||++++|++++|+|+||||||||+++|+|.. |.+|.+ .++|+++.. ......++++++++|+.
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i--~~~~~~~~~----------~~~~~~~~~i~~~~~~~ 68 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSI--LINGKDISD----------IDIEELRRRIGYVPQDP 68 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEE--EETTEEGTT----------SHHHHHHHTEEEEESSH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccc--ccccccccc----------ccccccccccccccccc
Confidence 68999999999999999999999999999999999 799999 999999964 35666778899999984
No 233
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.62 E-value=8.2e-16 Score=144.03 Aligned_cols=87 Identities=23% Similarity=0.218 Sum_probs=72.5
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
+++++++.+|+. .+..+++++||++++||.++|+|+||||||||+++|.|++ |++|+| .+||.++..
T Consensus 478 I~~~~vsf~y~~----~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I--~idg~~i~~------ 545 (710)
T TIGR03796 478 VELRNITFGYSP----LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEI--LFDGIPREE------ 545 (710)
T ss_pred EEEEEEEEecCC----CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE--EECCEeHHH------
Confidence 556666555321 1357999999999999999999999999999999999999 899999 999999965
Q ss_pred ccChhhHHHhhcceEEecccccccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLSIHLF 174 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f~~lf 174 (176)
-+..++|++|++|+|++ .+|
T Consensus 546 ----~~~~~lr~~i~~v~Q~~-~lf 565 (710)
T TIGR03796 546 ----IPREVLANSVAMVDQDI-FLF 565 (710)
T ss_pred ----CCHHHHHhheeEEecCC-hhh
Confidence 36667888999999986 444
No 234
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.62 E-value=9.9e-16 Score=124.13 Aligned_cols=76 Identities=20% Similarity=0.194 Sum_probs=62.0
Q ss_pred cC-cccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChh-hHHHhhcc
Q 030515 86 KN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAE-DRVENIRR 162 (176)
Q Consensus 86 ~~-~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~-~~~~~rrr 162 (176)
|+ ...+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|+++... +.. .....++.
T Consensus 10 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i--~~~g~~~~~~-------~~~~~~~~~~~~ 80 (218)
T cd03290 10 WGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKV--HWSNKNESEP-------SFEATRSRNRYS 80 (218)
T ss_pred cCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeE--EECCcccccc-------cccccchhhcce
Confidence 53 457999999999999999999999999999999999998 799999 9999887532 111 11233457
Q ss_pred eEEecccc
Q 030515 163 IGSVFVLS 170 (176)
Q Consensus 163 ig~V~Q~f 170 (176)
++|++|++
T Consensus 81 i~~~~q~~ 88 (218)
T cd03290 81 VAYAAQKP 88 (218)
T ss_pred EEEEcCCC
Confidence 99999986
No 235
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.62 E-value=9.2e-16 Score=143.76 Aligned_cols=85 Identities=26% Similarity=0.222 Sum_probs=72.5
Q ss_pred EEeccceeeeccccccC-cccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 71 CQNSTVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~-~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
+++++++.. |+ +..+++++||++++|+.++|+|+||||||||+++|.|+. |++|+| ++||.++..
T Consensus 474 I~~~~vsf~------y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I--~idg~~i~~----- 540 (708)
T TIGR01193 474 IVINDVSYS------YGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEI--LLNGFSLKD----- 540 (708)
T ss_pred EEEEEEEEE------cCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEE--EECCEEHHH-----
Confidence 555566555 43 357999999999999999999999999999999999998 899999 999999965
Q ss_pred cccChhhHHHhhcceEEecccccccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLSIHLF 174 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f~~lf 174 (176)
.+..++|++|+||+|++ .+|
T Consensus 541 -----~~~~~lr~~i~~v~Q~~-~lf 560 (708)
T TIGR01193 541 -----IDRHTLRQFINYLPQEP-YIF 560 (708)
T ss_pred -----cCHHHHHHheEEEecCc-eeh
Confidence 46677788999999986 454
No 236
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=1.7e-15 Score=126.28 Aligned_cols=85 Identities=16% Similarity=0.095 Sum_probs=68.0
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cC-----CCeEEEEECCeeccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HW-----RGKLTYILDGDNCRH 143 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~-----~G~i~~~ldG~~v~~ 143 (176)
+++++++.+. |+...+++++||++++|++++|+|+||||||||+++|+|++ |+ .|++ .++|+++..
T Consensus 7 ~l~~~nl~~~------~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i--~~~g~~i~~ 78 (261)
T PRK14258 7 AIKVNNLSFY------YDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRV--EFFNQNIYE 78 (261)
T ss_pred eEEEeeEEEE------eCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceE--EECCEEhhc
Confidence 5677777777 55557899999999999999999999999999999999999 43 6888 889988742
Q ss_pred CcccCcccChhhHHHhhcceEEecccc
Q 030515 144 GLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 144 ~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
........++.++|++|++
T Consensus 79 --------~~~~~~~~~~~i~~~~q~~ 97 (261)
T PRK14258 79 --------RRVNLNRLRRQVSMVHPKP 97 (261)
T ss_pred --------cccchHHhhccEEEEecCC
Confidence 1112334556799999985
No 237
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.62 E-value=9e-16 Score=126.22 Aligned_cols=71 Identities=30% Similarity=0.343 Sum_probs=61.4
Q ss_pred cCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceE
Q 030515 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIG 164 (176)
Q Consensus 86 ~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig 164 (176)
|+...+++++||++.+||+++|+|+||||||||+++|.|++ |.+|++ .++|+++... . ..++.++
T Consensus 10 ~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i--~i~g~~~~~~----------~--~~~~~i~ 75 (237)
T TIGR00968 10 FGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRI--RLNGQDATRV----------H--ARDRKIG 75 (237)
T ss_pred ECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE--EECCEEcCcC----------C--hhhcCEE
Confidence 55567999999999999999999999999999999999998 799999 9999987531 1 1246799
Q ss_pred Eecccc
Q 030515 165 SVFVLS 170 (176)
Q Consensus 165 ~V~Q~f 170 (176)
|++|.+
T Consensus 76 ~~~q~~ 81 (237)
T TIGR00968 76 FVFQHY 81 (237)
T ss_pred EEecCh
Confidence 999986
No 238
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.62 E-value=7.8e-16 Score=123.75 Aligned_cols=95 Identities=24% Similarity=0.178 Sum_probs=74.5
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCccc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNR 147 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~ 147 (176)
+++++.++++. |+.....+++||++.+||+++|+|+||||||||++||.+.+ |+.|.+.|...+......
T Consensus 5 PLL~V~~lsk~------Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl--- 75 (258)
T COG4107 5 PLLSVSGLSKL------YGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDL--- 75 (258)
T ss_pred cceeehhhhhh------hCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhH---
Confidence 45777777777 88889999999999999999999999999999999999998 899999877644322111
Q ss_pred CcccChhhHHHhh-cceEEeccccccc
Q 030515 148 DLSFKAEDRVENI-RRIGSVFVLSIHL 173 (176)
Q Consensus 148 d~~~~~~~~~~~r-rrig~V~Q~f~~l 173 (176)
...++.+++.+. ..-|+|.|++.+-
T Consensus 76 -~~msEaeRR~L~RTeWG~VhQnP~DG 101 (258)
T COG4107 76 -YTMSEAERRRLLRTEWGFVHQNPRDG 101 (258)
T ss_pred -hhhchHHHHHHhhhccceeecCcccc
Confidence 122555555544 4699999998763
No 239
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=9.3e-16 Score=142.51 Aligned_cols=89 Identities=27% Similarity=0.275 Sum_probs=75.3
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
.++.++++-.|.. ..++++++|+||++++||+++|+|||||||||++..|.++. |++|+| .+||.++..
T Consensus 465 ~IeF~~VsFaYP~---Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~I--llDG~~i~~----- 534 (716)
T KOG0058|consen 465 VIEFEDVSFAYPT---RPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRI--LLDGVPISD----- 534 (716)
T ss_pred eEEEEEeeeecCC---CCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeE--EECCeehhh-----
Confidence 3556666555432 24678999999999999999999999999999999999999 999999 999999965
Q ss_pred cccChhhHHHhhcceEEecccccccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLSIHLF 174 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f~~lf 174 (176)
-+...+|++||.|.|++ -||
T Consensus 535 -----~~~~~lr~~Ig~V~QEP-vLF 554 (716)
T KOG0058|consen 535 -----INHKYLRRKIGLVGQEP-VLF 554 (716)
T ss_pred -----cCHHHHHHHeeeeeccc-eee
Confidence 47777889999999998 454
No 240
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=2.2e-15 Score=125.83 Aligned_cols=88 Identities=23% Similarity=0.248 Sum_probs=69.3
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-c-----CCCeEEEEECCeecc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-H-----WRGKLTYILDGDNCR 142 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p-----~~G~i~~~ldG~~v~ 142 (176)
.+++++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|++ | ++|++ .++|+++.
T Consensus 15 ~~l~~~~l~~~------~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i--~~~g~~~~ 86 (265)
T PRK14252 15 QKSEVNKLNFY------YGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEI--ILHPDNVN 86 (265)
T ss_pred ceEEEEEEEEE------ECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEE--EEcCcccc
Confidence 34677787777 45557999999999999999999999999999999999998 4 58999 99998764
Q ss_pred CCcccCcccChhhHHHhhcceEEecccc
Q 030515 143 HGLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 143 ~~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
.. . ...+..+.+++++|++|++
T Consensus 87 ~~-----~-~~~~~~~~~~~i~~~~q~~ 108 (265)
T PRK14252 87 IL-----S-PEVDPIEVRMRISMVFQKP 108 (265)
T ss_pred cc-----c-cccCHHHHhccEEEEccCC
Confidence 21 0 0112334567899999985
No 241
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.61 E-value=1.6e-15 Score=136.83 Aligned_cols=83 Identities=24% Similarity=0.289 Sum_probs=67.5
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-c--CCCeEEEEECCeeccCCccc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-H--WRGKLTYILDGDNCRHGLNR 147 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p--~~G~i~~~ldG~~v~~~~~~ 147 (176)
++++++.+. |+...+++++||++++|++++|+|+||||||||+++|+|++ | ++|+| .++|+++...
T Consensus 2 l~i~~l~~~------~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i--~~~g~~~~~~--- 70 (500)
T TIGR02633 2 LEMKGIVKT------FGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEI--YWSGSPLKAS--- 70 (500)
T ss_pred EEEEeEEEE------eCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEE--EECCEECCCC---
Confidence 456666666 55667999999999999999999999999999999999998 4 68999 9999988542
Q ss_pred CcccChhhHHHhhcceEEecccc
Q 030515 148 DLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 148 d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
+ .....+++|+||+|++
T Consensus 71 ----~--~~~~~~~~i~~v~q~~ 87 (500)
T TIGR02633 71 ----N--IRDTERAGIVIIHQEL 87 (500)
T ss_pred ----C--HHHHHhCCEEEEeecc
Confidence 1 1122345799999986
No 242
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=2.3e-15 Score=130.32 Aligned_cols=89 Identities=26% Similarity=0.218 Sum_probs=71.3
Q ss_pred CcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc------cCCCeEEEEECCeec
Q 030515 68 NNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL------HWRGKLTYILDGDNC 141 (176)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll------p~~G~i~~~ldG~~v 141 (176)
..+++++++...|.- +...+++++||++++||+++|+|+||||||||+++|+|+. |++|+| .+||+++
T Consensus 78 ~~~i~~~nls~~y~~----~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I--~idG~~i 151 (329)
T PRK14257 78 ANVFEIRNFNFWYMN----RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEI--YFLGTNT 151 (329)
T ss_pred CceEEEEeeEEEecC----CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE--EECCEEc
Confidence 346778887777421 3346899999999999999999999999999999999997 258999 9999998
Q ss_pred cCCcccCcccChhhHHHhhcceEEecccc
Q 030515 142 RHGLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 142 ~~~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
.. .......++++++||+|.+
T Consensus 152 ~~--------~~~~~~~lr~~i~~v~q~~ 172 (329)
T PRK14257 152 RS--------KKISSLELRTRIGMVFQKP 172 (329)
T ss_pred cc--------cccchHhhhccEEEEecCC
Confidence 53 1123345667899999986
No 243
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.61 E-value=1.5e-15 Score=137.61 Aligned_cols=85 Identities=21% Similarity=0.152 Sum_probs=71.9
Q ss_pred EEeccceeeeccccccCc--ccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCccc
Q 030515 71 CQNSTVAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNR 147 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~--~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~ 147 (176)
++++++... |.+ ..+++++||++++|+.++|+|+||||||||+++|.|+. |++|+| .+||.++..
T Consensus 321 i~~~~v~f~------y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I--~~~g~~i~~---- 388 (529)
T TIGR02857 321 LEFSGLSVA------YPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSI--AVNGVPLAD---- 388 (529)
T ss_pred EEEEEEEEE------CCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE--EECCEehhh----
Confidence 566666666 433 36899999999999999999999999999999999999 799999 999999965
Q ss_pred CcccChhhHHHhhcceEEecccccccc
Q 030515 148 DLSFKAEDRVENIRRIGSVFVLSIHLF 174 (176)
Q Consensus 148 d~~~~~~~~~~~rrrig~V~Q~f~~lf 174 (176)
.+..++|++|++|+|++ .+|
T Consensus 389 ------~~~~~lr~~i~~v~Q~~-~lf 408 (529)
T TIGR02857 389 ------ADADSWRDQIAWVPQHP-FLF 408 (529)
T ss_pred ------CCHHHHHhheEEEcCCC-ccc
Confidence 35567778899999986 444
No 244
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=1.8e-15 Score=126.21 Aligned_cols=91 Identities=24% Similarity=0.287 Sum_probs=68.7
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCccc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNR 147 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~ 147 (176)
.++.++++.+. |+...+++++||++.+||+++|+|+||||||||+++|+|++ |++|++ .++|+....+ .
T Consensus 9 ~~i~~~~~~~~------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v--~~~G~~~~~g--~ 78 (257)
T PRK14246 9 DVFNISRLYLY------INDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKI--KVDGKVLYFG--K 78 (257)
T ss_pred hheeeeeEEEe------cCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCce--eEcCEEEECC--c
Confidence 34667777777 67778999999999999999999999999999999999998 788887 6666543211 0
Q ss_pred CcccChhhHHHhhcceEEeccccc
Q 030515 148 DLSFKAEDRVENIRRIGSVFVLSI 171 (176)
Q Consensus 148 d~~~~~~~~~~~rrrig~V~Q~f~ 171 (176)
++ ........+++++|++|++.
T Consensus 79 ~~--~~~~~~~~~~~i~~~~q~~~ 100 (257)
T PRK14246 79 DI--FQIDAIKLRKEVGMVFQQPN 100 (257)
T ss_pred cc--ccCCHHHHhcceEEEccCCc
Confidence 11 00122345678999999863
No 245
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.61 E-value=1.4e-15 Score=137.03 Aligned_cols=74 Identities=20% Similarity=0.177 Sum_probs=63.5
Q ss_pred cCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceE
Q 030515 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIG 164 (176)
Q Consensus 86 ~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig 164 (176)
|+...+++++||++++||+++|+|+||||||||+++|+|++ |++|+| .++|+++... ......+++++
T Consensus 8 ~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~~~~~---------~~~~~~~~~i~ 76 (491)
T PRK10982 8 FPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSI--LFQGKEIDFK---------SSKEALENGIS 76 (491)
T ss_pred eCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEE--EECCEECCCC---------CHHHHHhCCEE
Confidence 66668999999999999999999999999999999999998 799999 9999988532 12233456799
Q ss_pred Eecccc
Q 030515 165 SVFVLS 170 (176)
Q Consensus 165 ~V~Q~f 170 (176)
||+|++
T Consensus 77 ~v~q~~ 82 (491)
T PRK10982 77 MVHQEL 82 (491)
T ss_pred EEeccc
Confidence 999986
No 246
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.61 E-value=2.3e-15 Score=124.36 Aligned_cols=83 Identities=23% Similarity=0.248 Sum_probs=66.9
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhc--c-cCCCeEEEEECCeeccCCcc
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA--L-HWRGKLTYILDGDNCRHGLN 146 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gl--l-p~~G~i~~~ldG~~v~~~~~ 146 (176)
+++++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|+ + |++|++ +++|.++...
T Consensus 7 ~l~~~~l~~~------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i--~~~g~~~~~~-- 76 (252)
T CHL00131 7 ILEIKNLHAS------VNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDI--LFKGESILDL-- 76 (252)
T ss_pred eEEEEeEEEE------eCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceE--EECCEEcccC--
Confidence 5677777776 4455799999999999999999999999999999999997 4 689999 9999988642
Q ss_pred cCcccChhhHHHhhc-ceEEecccc
Q 030515 147 RDLSFKAEDRVENIR-RIGSVFVLS 170 (176)
Q Consensus 147 ~d~~~~~~~~~~~rr-rig~V~Q~f 170 (176)
. ....++ .+++++|.+
T Consensus 77 -----~---~~~~~~~~~~~~~q~~ 93 (252)
T CHL00131 77 -----E---PEERAHLGIFLAFQYP 93 (252)
T ss_pred -----C---hhhhheeeEEEEeccc
Confidence 1 112223 488999975
No 247
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.61 E-value=2.1e-15 Score=121.93 Aligned_cols=79 Identities=25% Similarity=0.217 Sum_probs=62.3
Q ss_pred ccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHh
Q 030515 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN 159 (176)
Q Consensus 81 ~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~ 159 (176)
++...|+...+ ++||++++ |+++|+|+||||||||+++|+|++ |++|++ .++|.++.... ...+....
T Consensus 5 ~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~~~~~~------~~~~~~~~ 73 (214)
T cd03297 5 DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTI--VLNGTVLFDSR------KKINLPPQ 73 (214)
T ss_pred eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceE--EECCEeccccc------chhhhhhH
Confidence 44444777655 99999999 999999999999999999999998 799999 99998874310 00123345
Q ss_pred hcceEEecccc
Q 030515 160 IRRIGSVFVLS 170 (176)
Q Consensus 160 rrrig~V~Q~f 170 (176)
+++++|++|.+
T Consensus 74 ~~~i~~~~q~~ 84 (214)
T cd03297 74 QRKIGLVFQQY 84 (214)
T ss_pred hhcEEEEecCC
Confidence 66899999986
No 248
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.61 E-value=1.5e-15 Score=122.88 Aligned_cols=66 Identities=21% Similarity=0.217 Sum_probs=57.2
Q ss_pred ceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceEEeccc
Q 030515 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGSVFVL 169 (176)
Q Consensus 91 ~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig~V~Q~ 169 (176)
.++++||++++|++++|+|+||||||||+++|+|++ |++|++ +++|+++... . ..+++++||+|+
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~~~~~---------~---~~~~~i~~v~q~ 78 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSI--KVNDQSHTGL---------A---PYQRPVSMLFQE 78 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEE--EECCEEcccC---------C---hhccceEEEecc
Confidence 357999999999999999999999999999999999 799999 9999987431 1 234679999998
Q ss_pred c
Q 030515 170 S 170 (176)
Q Consensus 170 f 170 (176)
+
T Consensus 79 ~ 79 (213)
T TIGR01277 79 N 79 (213)
T ss_pred C
Confidence 6
No 249
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.60 E-value=1.9e-15 Score=138.81 Aligned_cols=86 Identities=20% Similarity=0.122 Sum_probs=71.9
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
++++++...|+ ++..+++++||++++||.++|+|+||||||||+++|.|+. |++|+| .+||.++..
T Consensus 341 i~~~~v~f~y~-----~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I--~idg~~i~~------ 407 (592)
T PRK10790 341 IDIDNVSFAYR-----DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEI--RLDGRPLSS------ 407 (592)
T ss_pred EEEEEEEEEeC-----CCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceE--EECCEEhhh------
Confidence 45555555431 2356899999999999999999999999999999999999 899999 999999854
Q ss_pred ccChhhHHHhhcceEEecccccccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLSIHLF 174 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f~~lf 174 (176)
-+...++++|++|+|++ .+|
T Consensus 408 ----~~~~~l~~~i~~v~Q~~-~lF 427 (592)
T PRK10790 408 ----LSHSVLRQGVAMVQQDP-VVL 427 (592)
T ss_pred ----CCHHHHHhheEEEccCC-ccc
Confidence 46777888999999987 454
No 250
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.60 E-value=1.5e-15 Score=124.41 Aligned_cols=71 Identities=24% Similarity=0.265 Sum_probs=61.3
Q ss_pred cCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceE
Q 030515 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIG 164 (176)
Q Consensus 86 ~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig 164 (176)
|+...+++++||++++|++++|+|+||||||||+++|.|++ |..|++ .++|+++... . . .++.++
T Consensus 10 ~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i--~~~g~~~~~~-------~--~---~~~~i~ 75 (232)
T cd03300 10 YGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI--LLDGKDITNL-------P--P---HKRPVN 75 (232)
T ss_pred eCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE--EECCEEcCcC-------C--h---hhcceE
Confidence 55667999999999999999999999999999999999999 789999 9999988542 1 1 145799
Q ss_pred Eecccc
Q 030515 165 SVFVLS 170 (176)
Q Consensus 165 ~V~Q~f 170 (176)
+++|+.
T Consensus 76 ~~~q~~ 81 (232)
T cd03300 76 TVFQNY 81 (232)
T ss_pred EEeccc
Confidence 999985
No 251
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.60 E-value=1.8e-15 Score=138.43 Aligned_cols=85 Identities=26% Similarity=0.275 Sum_probs=71.5
Q ss_pred EEeccceeeeccccccC--cccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCccc
Q 030515 71 CQNSTVAKSTNILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNR 147 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~--~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~ 147 (176)
++++++... |. ...+++++||++++|+.++|+|+||||||||+++|.|++ |++|+| .+||.++..
T Consensus 342 i~~~~vsf~------y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I--~i~g~~i~~---- 409 (582)
T PRK11176 342 IEFRNVTFT------YPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEI--LLDGHDLRD---- 409 (582)
T ss_pred EEEEEEEEe------cCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceE--EECCEEhhh----
Confidence 556665555 43 356999999999999999999999999999999999999 899999 999999854
Q ss_pred CcccChhhHHHhhcceEEecccccccc
Q 030515 148 DLSFKAEDRVENIRRIGSVFVLSIHLF 174 (176)
Q Consensus 148 d~~~~~~~~~~~rrrig~V~Q~f~~lf 174 (176)
.+...++++|+||+|++ .+|
T Consensus 410 ------~~~~~~~~~i~~v~Q~~-~lf 429 (582)
T PRK11176 410 ------YTLASLRNQVALVSQNV-HLF 429 (582)
T ss_pred ------cCHHHHHhhceEEccCc-eee
Confidence 35566778899999986 444
No 252
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.60 E-value=2.7e-15 Score=135.85 Aligned_cols=83 Identities=16% Similarity=0.181 Sum_probs=67.9
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCccc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNR 147 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~ 147 (176)
.+++++++.+. ++ .+++++||++++|++++|+|+||||||||+++|+|++ |++|+| +++|+++...
T Consensus 264 ~~l~~~~l~~~------~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I--~~~g~~~~~~--- 330 (510)
T PRK09700 264 TVFEVRNVTSR------DR--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEI--RLNGKDISPR--- 330 (510)
T ss_pred cEEEEeCcccc------CC--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeE--EECCEECCCC---
Confidence 45777777654 32 3799999999999999999999999999999999999 799999 9999987531
Q ss_pred CcccChhhHHHhhcceEEecccc
Q 030515 148 DLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 148 d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
......+++|+||+|.+
T Consensus 331 ------~~~~~~~~~i~~v~q~~ 347 (510)
T PRK09700 331 ------SPLDAVKKGMAYITESR 347 (510)
T ss_pred ------CHHHHHHCCcEEccCcc
Confidence 12334556899999973
No 253
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.60 E-value=2.5e-15 Score=122.11 Aligned_cols=76 Identities=26% Similarity=0.375 Sum_probs=63.2
Q ss_pred eccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCccc
Q 030515 73 NSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSF 151 (176)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~ 151 (176)
++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|.++..
T Consensus 3 l~~v~~~------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~~~~~~~-------- 66 (223)
T TIGR03740 3 TKNLSKR------FGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEI--IFDGHPWTR-------- 66 (223)
T ss_pred EEeEEEE------ECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EECCEeccc--------
Confidence 4455555 55567999999999999999999999999999999999998 799999 999987632
Q ss_pred ChhhHHHhhcceEEecccc
Q 030515 152 KAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 152 ~~~~~~~~rrrig~V~Q~f 170 (176)
.. +++++|++|.+
T Consensus 67 --~~----~~~~~~~~q~~ 79 (223)
T TIGR03740 67 --KD----LHKIGSLIESP 79 (223)
T ss_pred --cc----cccEEEEcCCC
Confidence 11 25799999975
No 254
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.60 E-value=2.2e-15 Score=138.48 Aligned_cols=87 Identities=23% Similarity=0.225 Sum_probs=72.0
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
+++++++..|+- +...+++++||++++|++++|+|+||||||||+++|.|+. |++|+| .+||.++..
T Consensus 339 i~~~~v~f~y~~----~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I--~i~g~~i~~------ 406 (574)
T PRK11160 339 LTLNNVSFTYPD----QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEI--LLNGQPIAD------ 406 (574)
T ss_pred EEEEEEEEECCC----CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE--EECCEEhhh------
Confidence 566666665311 1246899999999999999999999999999999999999 899999 999999865
Q ss_pred ccChhhHHHhhcceEEecccccccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLSIHLF 174 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f~~lf 174 (176)
.+...+|++|++|+|++ .+|
T Consensus 407 ----~~~~~~r~~i~~v~Q~~-~lf 426 (574)
T PRK11160 407 ----YSEAALRQAISVVSQRV-HLF 426 (574)
T ss_pred ----CCHHHHHhheeEEcccc-hhh
Confidence 35666778899999986 454
No 255
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.60 E-value=3.4e-15 Score=119.62 Aligned_cols=85 Identities=21% Similarity=0.136 Sum_probs=67.0
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc--c-CCCeEEEEECCeeccCCccc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL--H-WRGKLTYILDGDNCRHGLNR 147 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll--p-~~G~i~~~ldG~~v~~~~~~ 147 (176)
++++++.+.|..........+++++||++++|++++|+|+||||||||+++|+|++ + .+|++ .++|+++..
T Consensus 4 l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i--~~~g~~~~~---- 77 (194)
T cd03213 4 LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEV--LINGRPLDK---- 77 (194)
T ss_pred EEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEE--EECCEeCch----
Confidence 56777777742100000257999999999999999999999999999999999997 5 78999 999998742
Q ss_pred CcccChhhHHHhhcceEEecccc
Q 030515 148 DLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 148 d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
...+++++|++|++
T Consensus 78 ---------~~~~~~i~~~~q~~ 91 (194)
T cd03213 78 ---------RSFRKIIGYVPQDD 91 (194)
T ss_pred ---------HhhhheEEEccCcc
Confidence 13456799999986
No 256
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.60 E-value=4.3e-15 Score=137.97 Aligned_cols=98 Identities=21% Similarity=0.173 Sum_probs=72.0
Q ss_pred CcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcc
Q 030515 68 NNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLN 146 (176)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~ 146 (176)
..+++++++.+.|+.. .+...+++++||++++||+++|+|+||||||||+++|+|++ |++|.| .++|..+... .
T Consensus 10 ~~~l~v~~l~~~y~~~--~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i--~~~g~~~~~~-~ 84 (623)
T PRK10261 10 RDVLAVENLNIAFMQE--QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLV--QCDKMLLRRR-S 84 (623)
T ss_pred CceEEEeceEEEecCC--CCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEE--EECCEEeccc-c
Confidence 4478888888885321 12357999999999999999999999999999999999999 789999 8888765210 0
Q ss_pred cC---c-ccChhhHHHhh-cceEEecccc
Q 030515 147 RD---L-SFKAEDRVENI-RRIGSVFVLS 170 (176)
Q Consensus 147 ~d---~-~~~~~~~~~~r-rrig~V~Q~f 170 (176)
.+ + .....++...+ ++||||||++
T Consensus 85 ~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~ 113 (623)
T PRK10261 85 RQVIELSEQSAAQMRHVRGADMAMIFQEP 113 (623)
T ss_pred ccccccccCCHHHHHHHhCCCEEEEEeCc
Confidence 00 0 00222333444 4699999986
No 257
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.60 E-value=2e-15 Score=124.08 Aligned_cols=70 Identities=26% Similarity=0.257 Sum_probs=59.8
Q ss_pred cCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceE
Q 030515 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIG 164 (176)
Q Consensus 86 ~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig 164 (176)
|+.. +++++||++++||+++|+|+||||||||+++|+|++ |++|++ +++|.++... .. .+++++
T Consensus 10 ~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v--~i~g~~~~~~---------~~---~~~~i~ 74 (235)
T cd03299 10 WKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKI--LLNGKDITNL---------PP---EKRDIS 74 (235)
T ss_pred eCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEE--EECCEEcCcC---------Ch---hHcCEE
Confidence 4443 799999999999999999999999999999999998 799999 9999987531 11 246799
Q ss_pred Eecccc
Q 030515 165 SVFVLS 170 (176)
Q Consensus 165 ~V~Q~f 170 (176)
+++|++
T Consensus 75 ~~~q~~ 80 (235)
T cd03299 75 YVPQNY 80 (235)
T ss_pred EEeecC
Confidence 999985
No 258
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.60 E-value=2.1e-15 Score=141.84 Aligned_cols=88 Identities=27% Similarity=0.231 Sum_probs=72.5
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
+++++++..|+. ..+..+++++||++++||.++|+|+||||||||+++|.|++ |++|+| .+||.++..
T Consensus 479 I~~~nVsf~Y~~---~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I--~idg~~i~~------ 547 (711)
T TIGR00958 479 IEFQDVSFSYPN---RPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQV--LLDGVPLVQ------ 547 (711)
T ss_pred EEEEEEEEECCC---CCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEE--EECCEEHHh------
Confidence 556666555321 01346899999999999999999999999999999999999 899999 999999965
Q ss_pred ccChhhHHHhhcceEEecccccccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLSIHLF 174 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f~~lf 174 (176)
.+...++++|++|+|++ .+|
T Consensus 548 ----~~~~~lr~~i~~v~Q~~-~lF 567 (711)
T TIGR00958 548 ----YDHHYLHRQVALVGQEP-VLF 567 (711)
T ss_pred ----cCHHHHHhhceEEecCc-ccc
Confidence 36667788999999986 444
No 259
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.59 E-value=2.3e-15 Score=126.83 Aligned_cols=75 Identities=21% Similarity=0.221 Sum_probs=65.6
Q ss_pred CcEEEeccceeeecccc--ccC-cccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccC
Q 030515 68 NNLCQNSTVAKSTNILW--HKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH 143 (176)
Q Consensus 68 ~~~~~~~~~~~~~~~~~--~~~-~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~ 143 (176)
+.+++++++.+.|.... +.. .+.++++|||++.+||+++|+|+|||||||+.|+|.|++ |+.|+| +++|+++..
T Consensus 2 ~~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i--~f~g~~i~~ 79 (268)
T COG4608 2 EPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEI--LFEGKDITK 79 (268)
T ss_pred CceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceE--EEcCcchhh
Confidence 35688999999987642 222 378999999999999999999999999999999999999 899999 999999876
Q ss_pred C
Q 030515 144 G 144 (176)
Q Consensus 144 ~ 144 (176)
+
T Consensus 80 ~ 80 (268)
T COG4608 80 L 80 (268)
T ss_pred c
Confidence 4
No 260
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.59 E-value=2.6e-15 Score=130.86 Aligned_cols=75 Identities=27% Similarity=0.263 Sum_probs=59.6
Q ss_pred cCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceE
Q 030515 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIG 164 (176)
Q Consensus 86 ~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig 164 (176)
|+... + ++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|+++.... ........+++++
T Consensus 10 ~~~~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I--~~~g~~~~~~~------~~~~~~~~~~~i~ 79 (352)
T PRK11144 10 LGDLC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRI--VLNGRVLFDAE------KGICLPPEKRRIG 79 (352)
T ss_pred eCCEE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EECCEEccccc------cccccchhhCCEE
Confidence 55433 3 899999999999999999999999999999999 799999 99999875310 0011233457899
Q ss_pred Eecccc
Q 030515 165 SVFVLS 170 (176)
Q Consensus 165 ~V~Q~f 170 (176)
||||++
T Consensus 80 ~v~q~~ 85 (352)
T PRK11144 80 YVFQDA 85 (352)
T ss_pred EEcCCc
Confidence 999986
No 261
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.59 E-value=2.1e-15 Score=131.56 Aligned_cols=75 Identities=25% Similarity=0.246 Sum_probs=60.5
Q ss_pred ccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccCh-hhHHHhhcc
Q 030515 85 HKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKA-EDRVENIRR 162 (176)
Q Consensus 85 ~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~-~~~~~~rrr 162 (176)
.|+... + ++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|+++... .. ......+++
T Consensus 8 ~~~~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I--~~~g~~i~~~-------~~~~~~~~~~~~ 76 (354)
T TIGR02142 8 RLGDFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEI--VLNGRTLFDS-------RKGIFLPPEKRR 76 (354)
T ss_pred EECCEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EECCEECccC-------ccccccchhhCC
Confidence 365544 4 899999999999999999999999999999999 799999 9999988531 00 012234567
Q ss_pred eEEecccc
Q 030515 163 IGSVFVLS 170 (176)
Q Consensus 163 ig~V~Q~f 170 (176)
++||||++
T Consensus 77 i~~v~q~~ 84 (354)
T TIGR02142 77 IGYVFQEA 84 (354)
T ss_pred eEEEecCC
Confidence 99999986
No 262
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=2.3e-15 Score=123.14 Aligned_cols=78 Identities=24% Similarity=0.282 Sum_probs=62.7
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
++++++.+.| +... .++||++.+|++++|+|+||||||||+++|+|++ |.+|++ .++|+++...
T Consensus 2 l~~~~l~~~~------~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i--~~~g~~~~~~----- 66 (232)
T PRK10771 2 LKLTDITWLY------HHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSL--TLNGQDHTTT----- 66 (232)
T ss_pred eEEEEEEEEE------CCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE--EECCeecCcC-----
Confidence 4566777764 3222 3899999999999999999999999999999998 799999 9999987531
Q ss_pred ccChhhHHHhhcceEEecccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f 170 (176)
.. .+++++|++|.+
T Consensus 67 -----~~--~~~~i~~~~q~~ 80 (232)
T PRK10771 67 -----PP--SRRPVSMLFQEN 80 (232)
T ss_pred -----Ch--hhccEEEEeccc
Confidence 11 135799999975
No 263
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.59 E-value=3.2e-15 Score=120.02 Aligned_cols=47 Identities=34% Similarity=0.384 Sum_probs=44.9
Q ss_pred cceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECC
Q 030515 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDG 138 (176)
Q Consensus 90 ~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG 138 (176)
.+++++||++++|++++|+|+||||||||+++|+|+. |++|++ .++|
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i--~~~g 66 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSV--SVPG 66 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeE--EEcC
Confidence 6999999999999999999999999999999999998 799999 7876
No 264
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.59 E-value=3.8e-15 Score=135.97 Aligned_cols=83 Identities=24% Similarity=0.295 Sum_probs=70.2
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
++++++...|+ +...+++++||++++|+.++|+|+||||||||+++|.|++ |++|+| .+||.++..
T Consensus 323 i~~~~v~f~y~-----~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i--~~~g~~~~~------ 389 (547)
T PRK10522 323 LELRNVTFAYQ-----DNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEI--LLDGKPVTA------ 389 (547)
T ss_pred EEEEEEEEEeC-----CCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE--EECCEECCC------
Confidence 55666666532 2346899999999999999999999999999999999999 899999 999999864
Q ss_pred ccChhhHHHhhcceEEecccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f 170 (176)
.+....+++|++|+|++
T Consensus 390 ----~~~~~~~~~i~~v~q~~ 406 (547)
T PRK10522 390 ----EQPEDYRKLFSAVFTDF 406 (547)
T ss_pred ----CCHHHHhhheEEEecCh
Confidence 35556778899999986
No 265
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.59 E-value=3.3e-15 Score=134.82 Aligned_cols=88 Identities=17% Similarity=0.213 Sum_probs=69.2
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-c-CCCeEEEEECCeeccCCcc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-H-WRGKLTYILDGDNCRHGLN 146 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p-~~G~i~~~ldG~~v~~~~~ 146 (176)
.+++++++.+.|.. .+...+++++||++++||+++|+|+||||||||+++|+|++ | ++|+| .++|+++...
T Consensus 256 ~~l~~~~l~~~~~~---~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i--~~~g~~~~~~-- 328 (500)
T TIGR02633 256 VILEARNLTCWDVI---NPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNV--FINGKPVDIR-- 328 (500)
T ss_pred ceEEEeCCcccccc---cccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEE--EECCEECCCC--
Confidence 35677777665210 02356899999999999999999999999999999999998 5 79999 9999988431
Q ss_pred cCcccChhhHHHhhcceEEecccc
Q 030515 147 RDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 147 ~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
......+++|+||+|.+
T Consensus 329 -------~~~~~~~~~i~~v~q~~ 345 (500)
T TIGR02633 329 -------NPAQAIRAGIAMVPEDR 345 (500)
T ss_pred -------CHHHHHhCCCEEcCcch
Confidence 12334567899999985
No 266
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.58 E-value=4.8e-15 Score=123.50 Aligned_cols=61 Identities=23% Similarity=0.221 Sum_probs=53.9
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDG 138 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG 138 (176)
+++++++.+. |+...+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .+++
T Consensus 4 ~l~~~~l~~~------~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i--~~~~ 65 (251)
T PRK09544 4 LVSLENVSVS------FGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI--KRNG 65 (251)
T ss_pred EEEEeceEEE------ECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EECC
Confidence 5677777777 55567999999999999999999999999999999999998 799999 7764
No 267
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.58 E-value=5.5e-15 Score=120.48 Aligned_cols=67 Identities=25% Similarity=0.280 Sum_probs=58.7
Q ss_pred ccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhccc----CCCeEEEEECCeeccCCcccCcccChhhHHHhhcceE
Q 030515 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH----WRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIG 164 (176)
Q Consensus 89 ~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp----~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig 164 (176)
.++++++||++++||+++|+|+||||||||+++|+|+++ ++|++ .++|+++.. ...+++++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i--~~~g~~~~~-------------~~~~~~i~ 84 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQI--LFNGQPRKP-------------DQFQKCVA 84 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEE--EECCEECCh-------------HHhcccEE
Confidence 679999999999999999999999999999999999974 78999 999987631 23456799
Q ss_pred Eecccc
Q 030515 165 SVFVLS 170 (176)
Q Consensus 165 ~V~Q~f 170 (176)
|++|+.
T Consensus 85 ~~~q~~ 90 (226)
T cd03234 85 YVRQDD 90 (226)
T ss_pred EeCCCC
Confidence 999975
No 268
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.58 E-value=6.7e-15 Score=130.23 Aligned_cols=96 Identities=24% Similarity=0.228 Sum_probs=82.7
Q ss_pred CCcEEEeccceeeecccc-----ccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeec
Q 030515 67 GNNLCQNSTVAKSTNILW-----HKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (176)
Q Consensus 67 g~~~~~~~~~~~~~~~~~-----~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v 141 (176)
+..+++.+++...|.+.. ......+++++||++++|+.++|+|+|||||||+.++|.++++..|+| .|+|+++
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I--~F~G~~i 350 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEI--RFDGQDI 350 (534)
T ss_pred CCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceE--EECCccc
Confidence 456788888877776541 123468999999999999999999999999999999999999888999 9999999
Q ss_pred cCCcccCcccChhhHHHhhcceEEeccccc
Q 030515 142 RHGLNRDLSFKAEDRVENIRRIGSVFVLSI 171 (176)
Q Consensus 142 ~~~~~~d~~~~~~~~~~~rrrig~V~Q~f~ 171 (176)
... +..+++.+|+++..|||++-
T Consensus 351 ~~~-------~~~~mrplR~~mQvVFQDPy 373 (534)
T COG4172 351 DGL-------SRKEMRPLRRRMQVVFQDPY 373 (534)
T ss_pred ccc-------ChhhhhhhhhhceEEEeCCC
Confidence 754 77888899999999999863
No 269
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.58 E-value=4.9e-15 Score=118.40 Aligned_cols=77 Identities=12% Similarity=0.049 Sum_probs=61.1
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
++++++.+. |+...++ ++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|.++...
T Consensus 2 l~~~~l~~~------~~~~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~i~~~----- 67 (195)
T PRK13541 2 LSLHQLQFN------IEQKNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNI--YYKNCNINNI----- 67 (195)
T ss_pred eEEEEeeEE------ECCcEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEE--EECCcccChh-----
Confidence 445666666 4444445 499999999999999999999999999999998 799999 9999887431
Q ss_pred ccChhhHHHhhcceEEecccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f 170 (176)
. ++++++++|.+
T Consensus 68 -----~----~~~~~~~~~~~ 79 (195)
T PRK13541 68 -----A----KPYCTYIGHNL 79 (195)
T ss_pred -----h----hhhEEeccCCc
Confidence 1 24588888865
No 270
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.58 E-value=3.8e-15 Score=139.36 Aligned_cols=87 Identities=30% Similarity=0.269 Sum_probs=72.2
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
++++++..+|+. ....+++++||++++||.++|+|+||||||||+++|.|+. |++|+| .+||.++..
T Consensus 464 I~~~~vsf~Y~~----~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I--~idg~~l~~------ 531 (694)
T TIGR03375 464 IEFRNVSFAYPG----QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSV--LLDGVDIRQ------ 531 (694)
T ss_pred EEEEEEEEEeCC----CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE--EECCEEhhh------
Confidence 556666555311 1346899999999999999999999999999999999999 899999 999999865
Q ss_pred ccChhhHHHhhcceEEecccccccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLSIHLF 174 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f~~lf 174 (176)
.+...+|++|++|+|++ .+|
T Consensus 532 ----~~~~~lr~~i~~v~Q~~-~lf 551 (694)
T TIGR03375 532 ----IDPADLRRNIGYVPQDP-RLF 551 (694)
T ss_pred ----CCHHHHHhccEEECCCh-hhh
Confidence 35667788999999986 444
No 271
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.58 E-value=4.3e-15 Score=136.52 Aligned_cols=85 Identities=28% Similarity=0.384 Sum_probs=71.5
Q ss_pred EEeccceeeeccccccC-cccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 71 CQNSTVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~-~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
++++++... |+ ...+++++||++++|+.++|+|+||||||||+++|.|+. |.+|.| .+||.++..
T Consensus 335 I~~~~vsf~------y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I--~i~g~~i~~----- 401 (588)
T PRK13657 335 VEFDDVSFS------YDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRI--LIDGTDIRT----- 401 (588)
T ss_pred EEEEEEEEE------eCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE--EECCEEhhh-----
Confidence 555555555 43 246899999999999999999999999999999999999 899999 999999865
Q ss_pred cccChhhHHHhhcceEEecccccccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLSIHLF 174 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f~~lf 174 (176)
.+...+|++|+||+|++ .+|
T Consensus 402 -----~~~~~~r~~i~~v~Q~~-~lf 421 (588)
T PRK13657 402 -----VTRASLRRNIAVVFQDA-GLF 421 (588)
T ss_pred -----CCHHHHHhheEEEecCc-ccc
Confidence 35666778899999986 454
No 272
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=5e-15 Score=134.05 Aligned_cols=88 Identities=18% Similarity=0.320 Sum_probs=69.4
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-c-CCCeEEEEECCeeccCCcc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-H-WRGKLTYILDGDNCRHGLN 146 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p-~~G~i~~~ldG~~v~~~~~ 146 (176)
.+++++++.+.|+. .+...+++++||++++|++++|+|+||||||||+++|+|++ | ++|+| .++|+++...
T Consensus 258 ~~l~~~~l~~~~~~---~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i--~~~g~~~~~~-- 330 (506)
T PRK13549 258 VILEVRNLTAWDPV---NPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEI--FIDGKPVKIR-- 330 (506)
T ss_pred ceEEEecCcccccc---ccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEE--EECCEECCCC--
Confidence 45777777766311 02456899999999999999999999999999999999998 4 89999 9999988531
Q ss_pred cCcccChhhHHHhhcceEEecccc
Q 030515 147 RDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 147 ~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
......+++++||+|++
T Consensus 331 -------~~~~~~~~~i~~v~q~~ 347 (506)
T PRK13549 331 -------NPQQAIAQGIAMVPEDR 347 (506)
T ss_pred -------CHHHHHHCCCEEeCcch
Confidence 12233456799999985
No 273
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.58 E-value=4.1e-15 Score=133.95 Aligned_cols=86 Identities=22% Similarity=0.131 Sum_probs=69.5
Q ss_pred CcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhccc--CCCeEEEEECCeeccCCc
Q 030515 68 NNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH--WRGKLTYILDGDNCRHGL 145 (176)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp--~~G~i~~~ldG~~v~~~~ 145 (176)
..+++++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|++| ++|++ +++|+++...
T Consensus 258 ~~~l~~~~l~~~------~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i--~~~g~~~~~~- 328 (490)
T PRK10938 258 EPRIVLNNGVVS------YNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDL--TLFGRRRGSG- 328 (490)
T ss_pred CceEEEeceEEE------ECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeE--EEecccCCCC-
Confidence 446788888777 555679999999999999999999999999999999999875 48999 8999875321
Q ss_pred ccCcccChhhHHHhhcceEEecccc
Q 030515 146 NRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 146 ~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
......+++|+|++|.+
T Consensus 329 --------~~~~~~~~~i~~v~q~~ 345 (490)
T PRK10938 329 --------ETIWDIKKHIGYVSSSL 345 (490)
T ss_pred --------CCHHHHHhhceEECHHH
Confidence 12223456799999974
No 274
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.57 E-value=4.4e-15 Score=123.12 Aligned_cols=68 Identities=19% Similarity=0.214 Sum_probs=58.9
Q ss_pred ceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceEEecccc
Q 030515 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 91 ~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
+++++||++++|++++|+|+||||||||+++|+|++|.+|++ .++|+++... ...+.++.++|++|.+
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i--~~~g~~i~~~----------~~~~~~~~i~~v~q~~ 78 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSI--QFAGQPLEAW----------SAAELARHRAYLSQQQ 78 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEE--EECCEecCcC----------CHHHHhhheEEecccC
Confidence 689999999999999999999999999999999999778999 9999988542 2334455699999975
No 275
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.57 E-value=8.9e-15 Score=132.73 Aligned_cols=96 Identities=23% Similarity=0.255 Sum_probs=68.8
Q ss_pred CcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEEC-CeeccCCc
Q 030515 68 NNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILD-GDNCRHGL 145 (176)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ld-G~~v~~~~ 145 (176)
..+++++++.+.|+-. ..+...+++++||++++|++++|+|+||||||||+++|+|++ |++|+| .++ |.+.....
T Consensus 277 ~~~l~~~~l~~~~~~~-~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i--~~~~g~~~~~~~ 353 (520)
T TIGR03269 277 EPIIKVRNVSKRYISV-DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEV--NVRVGDEWVDMT 353 (520)
T ss_pred CceEEEeccEEEeccC-CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE--EEecCCcccccc
Confidence 4468888888774210 012356899999999999999999999999999999999999 799999 885 54321100
Q ss_pred ccCcccChhhHHHhhcceEEecccc
Q 030515 146 NRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 146 ~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
+ ....+....+++|+||+|++
T Consensus 354 --~--~~~~~~~~~~~~i~~v~q~~ 374 (520)
T TIGR03269 354 --K--PGPDGRGRAKRYIGILHQEY 374 (520)
T ss_pred --c--cchhhHHHHhhhEEEEccCc
Confidence 0 01112334456799999985
No 276
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.57 E-value=5.2e-15 Score=121.05 Aligned_cols=66 Identities=27% Similarity=0.286 Sum_probs=56.7
Q ss_pred ceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-c----CCCeEEEEECCeeccCCcccCcccChhhHHHhhcceEE
Q 030515 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-H----WRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGS 165 (176)
Q Consensus 91 ~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p----~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig~ 165 (176)
+++++||++++|++++|+|+||||||||+++|+|++ | ++|++ .++|+++.. . ...+++++|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i--~~~g~~~~~----------~--~~~~~~i~~ 66 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEI--LLDGRPLLP----------L--SIRGRHIAT 66 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEE--EECCEechh----------h--hhhhheeEE
Confidence 478999999999999999999999999999999999 6 79999 999998742 1 122357999
Q ss_pred ecccc
Q 030515 166 VFVLS 170 (176)
Q Consensus 166 V~Q~f 170 (176)
++|++
T Consensus 67 ~~q~~ 71 (230)
T TIGR02770 67 IMQNP 71 (230)
T ss_pred EecCc
Confidence 99986
No 277
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.57 E-value=3.8e-15 Score=122.37 Aligned_cols=74 Identities=30% Similarity=0.181 Sum_probs=63.1
Q ss_pred cCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceE
Q 030515 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIG 164 (176)
Q Consensus 86 ~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig 164 (176)
....+.++++||++++||+++|+||||||||||++.|.|-+ |++|++ .++|.++..+ ...++.++-+
T Consensus 11 ~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v--~~~g~~l~~~----------~~~~lA~~ra 78 (259)
T COG4559 11 LAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEV--TLNGVPLNSW----------PPEELARHRA 78 (259)
T ss_pred eecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeE--eeCCcChhhC----------CHHHHHHHhh
Confidence 66779999999999999999999999999999999999998 999999 9999998764 3334445567
Q ss_pred Eeccccc
Q 030515 165 SVFVLSI 171 (176)
Q Consensus 165 ~V~Q~f~ 171 (176)
..+|+-.
T Consensus 79 VlpQ~s~ 85 (259)
T COG4559 79 VLPQNSS 85 (259)
T ss_pred hcccCcc
Confidence 7777643
No 278
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.57 E-value=6.6e-15 Score=134.51 Aligned_cols=88 Identities=27% Similarity=0.244 Sum_probs=70.7
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
++++++...|... ....+++++||++++||.++|+|+||||||||+++|.|++ |++|++ .+||.++..
T Consensus 338 i~~~~v~f~y~~~---~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I--~i~g~~i~~------ 406 (576)
T TIGR02204 338 IEFEQVNFAYPAR---PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRI--LLDGVDLRQ------ 406 (576)
T ss_pred EEEEEEEEECCCC---CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEE--EECCEEHHh------
Confidence 5555555553110 1146899999999999999999999999999999999999 799999 999999854
Q ss_pred ccChhhHHHhhcceEEecccccccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLSIHLF 174 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f~~lf 174 (176)
.+...++++|++++|++ .+|
T Consensus 407 ----~~~~~~~~~i~~~~Q~~-~lf 426 (576)
T TIGR02204 407 ----LDPAELRARMALVPQDP-VLF 426 (576)
T ss_pred ----cCHHHHHHhceEEccCC-ccc
Confidence 35556777899999986 444
No 279
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.56 E-value=6.5e-15 Score=134.27 Aligned_cols=87 Identities=24% Similarity=0.227 Sum_probs=71.1
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
++++++..+|.- ....+++++||++++|+.++|+|+||||||||+++|.|+. |++|+| .+||.++..
T Consensus 331 i~~~~v~f~y~~----~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I--~i~g~~i~~------ 398 (571)
T TIGR02203 331 VEFRNVTFRYPG----RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQI--LLDGHDLAD------ 398 (571)
T ss_pred EEEEEEEEEcCC----CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeE--EECCEeHHh------
Confidence 555555555311 1246899999999999999999999999999999999999 899999 999999854
Q ss_pred ccChhhHHHhhcceEEecccccccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLSIHLF 174 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f~~lf 174 (176)
.+..+++++|+||+|++ .+|
T Consensus 399 ----~~~~~~~~~i~~v~Q~~-~lf 418 (571)
T TIGR02203 399 ----YTLASLRRQVALVSQDV-VLF 418 (571)
T ss_pred ----cCHHHHHhhceEEccCc-ccc
Confidence 35566778899999986 454
No 280
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=6.3e-15 Score=133.71 Aligned_cols=82 Identities=24% Similarity=0.246 Sum_probs=71.9
Q ss_pred EEeccceeeeccccccCccc-ceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVD-KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~-~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
++++++.-. |+..+ +|+++||++++||-++|+|.|||||||++|+|.++.-.+|+| ++||+++..
T Consensus 352 I~F~dV~f~------y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I--~IdG~dik~------ 417 (591)
T KOG0057|consen 352 IEFDDVHFS------YGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSI--LIDGQDIKE------ 417 (591)
T ss_pred EEEEeeEEE------eCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcE--EECCeeHhh------
Confidence 555555555 77766 999999999999999999999999999999999999899999 999999965
Q ss_pred ccChhhHHHhhcceEEecccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f 170 (176)
.+++.+|+-||+|+|+-
T Consensus 418 ----~~~~SlR~~Ig~VPQd~ 434 (591)
T KOG0057|consen 418 ----VSLESLRQSIGVVPQDS 434 (591)
T ss_pred ----hChHHhhhheeEeCCcc
Confidence 46777888899999985
No 281
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.56 E-value=7.7e-15 Score=134.38 Aligned_cols=89 Identities=24% Similarity=0.298 Sum_probs=71.5
Q ss_pred EEeccceeeeccccccC-cccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 71 CQNSTVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~-~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
++++++...|+.. .+ ...+++++||++++|++++|+|+||||||||+++|.|+. |++|+| .+||.++...
T Consensus 338 i~~~~v~f~y~~~--~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i--~~~g~~i~~~---- 409 (555)
T TIGR01194 338 IELKDVHMNPKAP--EGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEI--LLDGAAVSAD---- 409 (555)
T ss_pred EEEEEEEEEeCCC--CCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE--EECCEECCCC----
Confidence 5666666664211 00 135899999999999999999999999999999999998 899999 9999998652
Q ss_pred cccChhhHHHhhcceEEecccccccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLSIHLF 174 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f~~lf 174 (176)
+..++++.+++|+|++ .+|
T Consensus 410 ------~~~~~~~~i~~v~q~~-~lf 428 (555)
T TIGR01194 410 ------SRDDYRDLFSAIFADF-HLF 428 (555)
T ss_pred ------CHHHHHhhCcEEccCh-hhh
Confidence 4556677899999986 444
No 282
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.56 E-value=4.6e-15 Score=118.78 Aligned_cols=96 Identities=23% Similarity=0.195 Sum_probs=74.4
Q ss_pred EEEeccceeeeccccccC-cccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCccc
Q 030515 70 LCQNSTVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNR 147 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~-~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~ 147 (176)
.+.++++.|+|-++.+.| ..++++++||+++.||++++-|+|||||||++|+|.+.. |++|+|.+.=.|+-+.-.
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~--- 80 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLV--- 80 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhh---
Confidence 477889999988876655 457999999999999999999999999999999999988 999999333344433211
Q ss_pred CcccChhhHHHhhcc-eEEecccc
Q 030515 148 DLSFKAEDRVENIRR-IGSVFVLS 170 (176)
Q Consensus 148 d~~~~~~~~~~~rrr-ig~V~Q~f 170 (176)
...+.+.-+.||+ ||||.|++
T Consensus 81 --~a~pr~vl~vRr~TiGyVSQFL 102 (235)
T COG4778 81 --TAEPREVLEVRRTTIGYVSQFL 102 (235)
T ss_pred --ccChHHHHHHHHhhhHHHHHHH
Confidence 1134455566765 99999964
No 283
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.56 E-value=9.5e-15 Score=114.48 Aligned_cols=59 Identities=22% Similarity=0.140 Sum_probs=52.6
Q ss_pred ccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceEEec
Q 030515 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGSVF 167 (176)
Q Consensus 89 ~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig~V~ 167 (176)
..+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|. ++++|++
T Consensus 14 ~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~~~---------------------~~i~~~~ 70 (166)
T cd03223 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI--GMPEG---------------------EDLLFLP 70 (166)
T ss_pred CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE--EECCC---------------------ceEEEEC
Confidence 46899999999999999999999999999999999998 799999 77641 4688888
Q ss_pred ccc
Q 030515 168 VLS 170 (176)
Q Consensus 168 Q~f 170 (176)
|++
T Consensus 71 q~~ 73 (166)
T cd03223 71 QRP 73 (166)
T ss_pred CCC
Confidence 875
No 284
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.56 E-value=1e-14 Score=132.41 Aligned_cols=58 Identities=24% Similarity=0.287 Sum_probs=50.2
Q ss_pred EeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc---cCCCeEEEEEC
Q 030515 72 QNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL---HWRGKLTYILD 137 (176)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll---p~~G~i~~~ld 137 (176)
+++++++. |+...+++++||++++|++++|+|+||||||||+++|+|++ |++|+| .++
T Consensus 2 ~~~~l~~~------~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i--~~~ 62 (520)
T TIGR03269 2 EVKNLTKK------FDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRI--IYH 62 (520)
T ss_pred EEEEEEEE------ECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEE--EEe
Confidence 34555555 56667999999999999999999999999999999999995 789999 776
No 285
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.56 E-value=9.9e-15 Score=112.13 Aligned_cols=52 Identities=23% Similarity=0.163 Sum_probs=47.8
Q ss_pred cCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCe
Q 030515 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGD 139 (176)
Q Consensus 86 ~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~ 139 (176)
|+...+++++||++++||+++|+|+||||||||+++|.|++ |++|++ +++|+
T Consensus 10 ~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i--~~~~~ 62 (144)
T cd03221 10 YGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV--TWGST 62 (144)
T ss_pred ECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEE--EECCe
Confidence 55557999999999999999999999999999999999999 799999 88874
No 286
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.56 E-value=1e-14 Score=133.07 Aligned_cols=87 Identities=28% Similarity=0.231 Sum_probs=70.9
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
++++++...|+ .+...+++++||++++|+.++|+|+||||||||+++|.|++ |++|++ .+||.++...
T Consensus 317 i~~~~v~~~y~----~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i--~~~g~~i~~~----- 385 (544)
T TIGR01842 317 LSVENVTIVPP----GGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSV--RLDGADLKQW----- 385 (544)
T ss_pred EEEEEEEEEcC----CCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE--EECCEehhhC-----
Confidence 55666655531 12357899999999999999999999999999999999999 899999 9999998652
Q ss_pred ccChhhHHHhhcceEEecccccccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLSIHLF 174 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f~~lf 174 (176)
+....++.+++|+|++ .+|
T Consensus 386 -----~~~~~~~~i~~v~q~~-~lf 404 (544)
T TIGR01842 386 -----DRETFGKHIGYLPQDV-ELF 404 (544)
T ss_pred -----CHHHHhhheEEecCCc-ccc
Confidence 4456678899999986 443
No 287
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.55 E-value=9.5e-15 Score=136.76 Aligned_cols=87 Identities=28% Similarity=0.280 Sum_probs=71.6
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
+++++++..|. .+...+++++||++++|+.++|+|+||||||||+++|.|+. |++|+| .+||.++..
T Consensus 456 i~~~~vsf~y~----~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I--~idg~~i~~------ 523 (694)
T TIGR01846 456 ITFENIRFRYA----PDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQV--LVDGVDLAI------ 523 (694)
T ss_pred EEEEEEEEEcC----CCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE--EECCEehhh------
Confidence 55656555531 12346899999999999999999999999999999999999 899999 999999965
Q ss_pred ccChhhHHHhhcceEEecccccccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLSIHLF 174 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f~~lf 174 (176)
.+..++|++|++|+|+. .+|
T Consensus 524 ----~~~~~~r~~i~~v~q~~-~lf 543 (694)
T TIGR01846 524 ----ADPAWLRRQMGVVLQEN-VLF 543 (694)
T ss_pred ----CCHHHHHHhCeEEccCC-eeh
Confidence 35667788899999986 444
No 288
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.55 E-value=4.2e-15 Score=124.29 Aligned_cols=66 Identities=20% Similarity=0.203 Sum_probs=61.0
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCC
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHG 144 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~ 144 (176)
+++++++|+ |++..+++++||++++|++++++|+||+||||++|+|.+++ |++|+| .++|.++.+-
T Consensus 3 L~ie~vtK~------Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I--~~~g~~~~~~ 69 (300)
T COG4152 3 LEIEGVTKS------FGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEI--TWNGGPLSQE 69 (300)
T ss_pred eEEecchhc------cCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceE--EEcCcchhhh
Confidence 567777777 89999999999999999999999999999999999999999 899999 9999988753
No 289
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.55 E-value=8.2e-15 Score=116.72 Aligned_cols=82 Identities=21% Similarity=0.169 Sum_probs=67.6
Q ss_pred ccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhc
Q 030515 83 LWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIR 161 (176)
Q Consensus 83 ~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rr 161 (176)
.+.||...+|.||+|+-.+||.++++||||+|||||+|.||-+. |.+|+. .+.+....-. ....+....++|+
T Consensus 9 n~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l--~ia~~~fd~s----~~~~~k~i~~lr~ 82 (242)
T COG4161 9 NCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL--NIAGNHFDFS----KTPSDKAIRDLRR 82 (242)
T ss_pred ccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeE--Eecccccccc----cCccHHHHHHHHH
Confidence 33489999999999999999999999999999999999999987 999999 7766544210 0013467778889
Q ss_pred ceEEecccc
Q 030515 162 RIGSVFVLS 170 (176)
Q Consensus 162 rig~V~Q~f 170 (176)
.+|||||.+
T Consensus 83 ~vgmvfqqy 91 (242)
T COG4161 83 NVGMVFQQY 91 (242)
T ss_pred hhhhhhhhh
Confidence 999999986
No 290
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.55 E-value=1.2e-14 Score=128.68 Aligned_cols=94 Identities=19% Similarity=0.222 Sum_probs=80.2
Q ss_pred CcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcccC------CCeEEEEECCeec
Q 030515 68 NNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW------RGKLTYILDGDNC 141 (176)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~------~G~i~~~ldG~~v 141 (176)
+.++++++++..+... .+.+.+++++||++.+||+++|+|+||||||-.+..+.+++|. +|+| .++|+++
T Consensus 4 ~~lL~v~nLsV~f~~~--~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i--~f~G~dl 79 (534)
T COG4172 4 MPLLSIRNLSVAFHQE--GGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSI--LFDGEDL 79 (534)
T ss_pred CcceeeeccEEEEecC--CcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCcccee--EEcChhh
Confidence 4567888888776554 4688999999999999999999999999999999999999964 4678 9999998
Q ss_pred cCCcccCcccChhhHHHhhc-ceEEecccccc
Q 030515 142 RHGLNRDLSFKAEDRVENIR-RIGSVFVLSIH 172 (176)
Q Consensus 142 ~~~~~~d~~~~~~~~~~~rr-rig~V~Q~f~~ 172 (176)
-.. ++.+++.+|. +|+||||.+..
T Consensus 80 l~~-------se~~lr~iRG~~I~MIFQEPMt 104 (534)
T COG4172 80 LAA-------SERQLRGVRGNKIGMIFQEPMT 104 (534)
T ss_pred hcC-------CHHHHhhhcccceEEEeccccc
Confidence 764 7788888885 69999998754
No 291
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.55 E-value=1.5e-14 Score=111.62 Aligned_cols=71 Identities=31% Similarity=0.357 Sum_probs=60.3
Q ss_pred cCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceE
Q 030515 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIG 164 (176)
Q Consensus 86 ~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig 164 (176)
|....+++++||++.+|++++|+|+||||||||+++|+|++ |..|++ .++|.++... .....++.++
T Consensus 9 ~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i--~~~~~~~~~~----------~~~~~~~~i~ 76 (157)
T cd00267 9 YGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEI--LIDGKDIAKL----------PLEELRRRIG 76 (157)
T ss_pred eCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEE--EECCEEcccC----------CHHHHHhceE
Confidence 44457899999999999999999999999999999999999 789999 9999887542 2334456799
Q ss_pred Eecc
Q 030515 165 SVFV 168 (176)
Q Consensus 165 ~V~Q 168 (176)
|++|
T Consensus 77 ~~~q 80 (157)
T cd00267 77 YVPQ 80 (157)
T ss_pred EEee
Confidence 9988
No 292
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.55 E-value=8.5e-15 Score=122.00 Aligned_cols=86 Identities=26% Similarity=0.236 Sum_probs=73.8
Q ss_pred CCcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCc
Q 030515 67 GNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGL 145 (176)
Q Consensus 67 g~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~ 145 (176)
...+++++++... |+.+.+|+++|++|++||-.+|+||||||||||++++++.. |.+|.+ .+-|+...+.
T Consensus 28 ~~~li~l~~v~v~------r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~--~~~G~~~G~~- 98 (257)
T COG1119 28 NEPLIELKNVSVR------RNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV--TLLGRRFGKG- 98 (257)
T ss_pred CcceEEecceEEE------ECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCce--eeeeeeccCC-
Confidence 3456888888777 78889999999999999999999999999999999999999 688999 8888888763
Q ss_pred ccCcccChhhHHHhhcceEEeccc
Q 030515 146 NRDLSFKAEDRVENIRRIGSVFVL 169 (176)
Q Consensus 146 ~~d~~~~~~~~~~~rrrig~V~Q~ 169 (176)
+-..++|++||+|.-.
T Consensus 99 --------~~~~elrk~IG~vS~~ 114 (257)
T COG1119 99 --------ETIFELRKRIGLVSSE 114 (257)
T ss_pred --------cchHHHHHHhCccCHH
Confidence 2227888999999743
No 293
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.54 E-value=2.9e-14 Score=133.05 Aligned_cols=93 Identities=25% Similarity=0.225 Sum_probs=74.3
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
+++++++.+.|... .+...+++++||++++||+++|+|+||||||||+++|+|++ |++|++ .+||+++...
T Consensus 4 ~l~~~nl~~~y~~~--~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i--~~~g~~i~~~---- 75 (648)
T PRK10535 4 LLELKDIRRSYPSG--EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTY--RVAGQDVATL---- 75 (648)
T ss_pred EEEEeeEEEEeCCC--CCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE--EECCEEcCcC----
Confidence 57788888875321 12346899999999999999999999999999999999999 799999 9999998653
Q ss_pred cccChhhHHHhh-cceEEecccccccc
Q 030515 149 LSFKAEDRVENI-RRIGSVFVLSIHLF 174 (176)
Q Consensus 149 ~~~~~~~~~~~r-rrig~V~Q~f~~lf 174 (176)
...++.+.+ +.++|+||++ .+|
T Consensus 76 ---~~~~~~~~~~~~i~~v~q~~-~l~ 98 (648)
T PRK10535 76 ---DADALAQLRREHFGFIFQRY-HLL 98 (648)
T ss_pred ---CHHHHHHHHhccEEEEeCCc-ccC
Confidence 334444444 5799999987 444
No 294
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.54 E-value=1.5e-14 Score=132.77 Aligned_cols=74 Identities=20% Similarity=0.202 Sum_probs=65.2
Q ss_pred cccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceEEe
Q 030515 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGSV 166 (176)
Q Consensus 88 ~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig~V 166 (176)
+..+++++||++++|+.++|+|+||||||||+++|.|++ |++|+| .+||.++.. .+...+++++++|
T Consensus 327 ~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i--~~~g~~~~~----------~~~~~~~~~i~~v 394 (569)
T PRK10789 327 DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDI--RFHDIPLTK----------LQLDSWRSRLAVV 394 (569)
T ss_pred CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEE--EECCEEHhh----------CCHHHHHhheEEE
Confidence 356899999999999999999999999999999999999 899999 999999854 3455677889999
Q ss_pred cccccccc
Q 030515 167 FVLSIHLF 174 (176)
Q Consensus 167 ~Q~f~~lf 174 (176)
+|++ .+|
T Consensus 395 ~q~~-~lf 401 (569)
T PRK10789 395 SQTP-FLF 401 (569)
T ss_pred ccCC-eec
Confidence 9986 444
No 295
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.54 E-value=1.3e-14 Score=114.23 Aligned_cols=74 Identities=28% Similarity=0.294 Sum_probs=63.3
Q ss_pred cCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-c---CCCeEEEEECCeeccCCcccCcccChhhHHHhhc
Q 030515 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-H---WRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIR 161 (176)
Q Consensus 86 ~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p---~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rr 161 (176)
.+....|-++||+|.+|||+.||||||||||||+.-+.|.+ + .+|++ +++++.+.. +...+|
T Consensus 12 l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~--~l~~~~l~~------------lPa~qR 77 (213)
T COG4136 12 LPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGEL--WLNEQRLDM------------LPAAQR 77 (213)
T ss_pred CCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEE--EECCeeccc------------cchhhh
Confidence 56668899999999999999999999999999999999998 4 47999 999999853 334568
Q ss_pred ceEEecccccccc
Q 030515 162 RIGSVFVLSIHLF 174 (176)
Q Consensus 162 rig~V~Q~f~~lf 174 (176)
++|+.||+. .||
T Consensus 78 q~GiLFQD~-lLF 89 (213)
T COG4136 78 QIGILFQDA-LLF 89 (213)
T ss_pred heeeeeccc-ccc
Confidence 899999985 455
No 296
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.54 E-value=1.8e-14 Score=132.79 Aligned_cols=82 Identities=20% Similarity=0.226 Sum_probs=69.4
Q ss_pred EEeccceeeeccccccCc-ccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 71 CQNSTVAKSTNILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~-~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
++++++... |++ ..+++++||++++|+.++|+|+||||||||+++|.|+. |++|++ .+||.++...
T Consensus 335 i~~~~v~~~------y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i--~~~g~~~~~~---- 402 (585)
T TIGR01192 335 VEFRHITFE------FANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQI--LIDGIDINTV---- 402 (585)
T ss_pred EEEEEEEEE------CCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEE--EECCEEhhhC----
Confidence 556666655 443 46899999999999999999999999999999999999 799999 9999998642
Q ss_pred cccChhhHHHhhcceEEecccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f 170 (176)
+....++.+++|+|++
T Consensus 403 ------~~~~~~~~i~~v~q~~ 418 (585)
T TIGR01192 403 ------TRESLRKSIATVFQDA 418 (585)
T ss_pred ------CHHHHHhheEEEccCC
Confidence 4455677899999986
No 297
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.53 E-value=1.4e-14 Score=116.85 Aligned_cols=75 Identities=24% Similarity=0.337 Sum_probs=59.6
Q ss_pred ccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhc
Q 030515 83 LWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIR 161 (176)
Q Consensus 83 ~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rr 161 (176)
.|.|+..+. ..+++++.||+++|+||||||||||++.|+|++ |.+|++ +++|++.... .+ ..|
T Consensus 8 ~~~y~~~~~--~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i--~i~g~d~t~~-------~P-----~~R 71 (231)
T COG3840 8 RFSYGHLPM--RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEI--LINGVDHTAS-------PP-----AER 71 (231)
T ss_pred EEeeCcceE--EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceE--EEcCeecCcC-------Cc-----ccC
Confidence 334554433 456789999999999999999999999999999 999999 9999999753 11 125
Q ss_pred ceEEecccccccc
Q 030515 162 RIGSVFVLSIHLF 174 (176)
Q Consensus 162 rig~V~Q~f~~lf 174 (176)
-++|+||.- +||
T Consensus 72 PVSmlFQEn-NLF 83 (231)
T COG3840 72 PVSMLFQEN-NLF 83 (231)
T ss_pred Chhhhhhcc-ccc
Confidence 699999964 555
No 298
>PLN03130 ABC transporter C family member; Provisional
Probab=99.53 E-value=1.9e-14 Score=145.46 Aligned_cols=88 Identities=18% Similarity=0.171 Sum_probs=74.6
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
.++++++..+|+- +...+|+|+||++++||.++|+|+||||||||+++|.|++ |++|+| .+||.++..
T Consensus 1237 ~I~f~nVsf~Y~~----~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I--~IDG~dI~~----- 1305 (1622)
T PLN03130 1237 SIKFEDVVLRYRP----ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRI--LIDGCDISK----- 1305 (1622)
T ss_pred cEEEEEEEEEeCC----CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceE--EECCEeccc-----
Confidence 3667777666421 2236999999999999999999999999999999999998 899999 999999965
Q ss_pred cccChhhHHHhhcceEEecccccccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLSIHLF 174 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f~~lf 174 (176)
-...++|++|++|+|++ .+|
T Consensus 1306 -----i~l~~LR~~IsiVpQdp-~LF 1325 (1622)
T PLN03130 1306 -----FGLMDLRKVLGIIPQAP-VLF 1325 (1622)
T ss_pred -----CCHHHHHhccEEECCCC-ccc
Confidence 47778889999999997 454
No 299
>PTZ00243 ABC transporter; Provisional
Probab=99.53 E-value=2.2e-14 Score=144.57 Aligned_cols=87 Identities=18% Similarity=0.073 Sum_probs=73.5
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
++++++.-+|.- +...+|+++||++++||.++|+|+||||||||+++|.|++ |++|+| .+||.++..
T Consensus 1309 I~f~nVsf~Y~~----~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I--~IDG~di~~------ 1376 (1560)
T PTZ00243 1309 LVFEGVQMRYRE----GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEI--RVNGREIGA------ 1376 (1560)
T ss_pred EEEEEEEEEeCC----CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE--EECCEEccc------
Confidence 666666666421 2235899999999999999999999999999999999999 899999 999999965
Q ss_pred ccChhhHHHhhcceEEecccccccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLSIHLF 174 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f~~lf 174 (176)
....++|++|++|+|++ .||
T Consensus 1377 ----i~l~~LR~~I~iVpQdp-~LF 1396 (1560)
T PTZ00243 1377 ----YGLRELRRQFSMIPQDP-VLF 1396 (1560)
T ss_pred ----CCHHHHHhcceEECCCC-ccc
Confidence 36677889999999997 555
No 300
>PLN03232 ABC transporter C family member; Provisional
Probab=99.53 E-value=1.9e-14 Score=144.61 Aligned_cols=88 Identities=15% Similarity=0.133 Sum_probs=74.2
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
.++++++..+|+ .+...+|+|+||++++||.++|+|+||||||||+++|.|++ |++|+| .+||.++..
T Consensus 1234 ~I~f~nVsf~Y~----~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I--~IdG~di~~----- 1302 (1495)
T PLN03232 1234 SIKFEDVHLRYR----PGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRI--MIDDCDVAK----- 1302 (1495)
T ss_pred cEEEEEEEEEEC----CCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceE--EECCEEhhh-----
Confidence 366777766641 12246999999999999999999999999999999999999 899999 999999965
Q ss_pred cccChhhHHHhhcceEEecccccccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLSIHLF 174 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f~~lf 174 (176)
.....+|++|++|+|++ .+|
T Consensus 1303 -----i~~~~lR~~i~iVpQdp-~LF 1322 (1495)
T PLN03232 1303 -----FGLTDLRRVLSIIPQSP-VLF 1322 (1495)
T ss_pred -----CCHHHHHhhcEEECCCC-eee
Confidence 36677888999999997 454
No 301
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.52 E-value=2.8e-14 Score=130.78 Aligned_cols=61 Identities=23% Similarity=0.214 Sum_probs=54.8
Q ss_pred cEEEeccceeeeccccccC-cccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEEC
Q 030515 69 NLCQNSTVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILD 137 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~-~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ld 137 (176)
.+++++++.+. |+ ...+++++||++++|++++|+|+||||||||+++|+|++ |++|+| .++
T Consensus 5 ~~l~i~~l~~~------y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i--~~~ 67 (556)
T PRK11819 5 YIYTMNRVSKV------VPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEA--RPA 67 (556)
T ss_pred EEEEEeeEEEE------eCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE--Eec
Confidence 46888888887 55 568999999999999999999999999999999999999 799999 664
No 302
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.52 E-value=2.6e-14 Score=116.49 Aligned_cols=80 Identities=23% Similarity=0.261 Sum_probs=64.9
Q ss_pred EEEeccceeeeccccccCcc--cceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcc
Q 030515 70 LCQNSTVAKSTNILWHKNSV--DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLN 146 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~--~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~ 146 (176)
++.++.++-+ |..+ .+++|+|+++.+||.++++||||||||||++.++|+. |..|+| .+||+.|..-
T Consensus 3 ~l~~~~~sl~------y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i--~l~~r~i~gP-- 72 (259)
T COG4525 3 MLNVSHLSLS------YEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSI--QLNGRRIEGP-- 72 (259)
T ss_pred eeehhheEEe------cCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceE--EECCEeccCC--
Confidence 4445555555 4444 4999999999999999999999999999999999999 899999 9999998641
Q ss_pred cCcccChhhHHHhhcceEEecccccc
Q 030515 147 RDLSFKAEDRVENIRRIGSVFVLSIH 172 (176)
Q Consensus 147 ~d~~~~~~~~~~~rrrig~V~Q~f~~ 172 (176)
. .+-|.|||+.+.
T Consensus 73 --------g-----aergvVFQ~~~L 85 (259)
T COG4525 73 --------G-----AERGVVFQNEAL 85 (259)
T ss_pred --------C-----ccceeEeccCcc
Confidence 0 134889998654
No 303
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.52 E-value=8.1e-15 Score=119.49 Aligned_cols=66 Identities=30% Similarity=0.312 Sum_probs=60.5
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCC
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHG 144 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~ 144 (176)
+++++++|+ |+.+.+++++|+++++|.+..|+||||+|||||+.++.+++ .++|.+ ++||.++...
T Consensus 2 I~i~nv~K~------y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i--~i~g~~~~~~ 68 (252)
T COG4604 2 ITIENVSKS------YGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI--TIDGLELTST 68 (252)
T ss_pred eeehhhhHh------hCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceE--EEeeeecccC
Confidence 456677777 88899999999999999999999999999999999999999 599999 9999999764
No 304
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.52 E-value=3.4e-14 Score=128.09 Aligned_cols=83 Identities=13% Similarity=0.123 Sum_probs=66.8
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCccc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNR 147 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~ 147 (176)
.+++++++.+. + ..+++++||++++||+++|+|+||||||||+++|+|++ |++|+| +++|+++...
T Consensus 249 ~~i~~~~l~~~------~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~i~~~--- 315 (491)
T PRK10982 249 VILEVRNLTSL------R--QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTI--TLHGKKINNH--- 315 (491)
T ss_pred cEEEEeCcccc------c--CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEE--EECCEECCCC---
Confidence 35666666554 1 25899999999999999999999999999999999999 799999 9999988542
Q ss_pred CcccChhhHHHhhcceEEecccc
Q 030515 148 DLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 148 d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
......++.++|++|+.
T Consensus 316 ------~~~~~~~~~i~~~~q~~ 332 (491)
T PRK10982 316 ------NANEAINHGFALVTEER 332 (491)
T ss_pred ------CHHHHHHCCCEEcCCch
Confidence 12233456799999874
No 305
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.51 E-value=3.7e-14 Score=142.79 Aligned_cols=88 Identities=19% Similarity=0.114 Sum_probs=74.4
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
.++++++..+|+- +...+|+++||++++||.++|+|+||||||||+++|.|++ |++|+| .+||.++..
T Consensus 1284 ~I~f~nVsf~Y~~----~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I--~IdG~dI~~----- 1352 (1522)
T TIGR00957 1284 RVEFRNYCLRYRE----DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEI--IIDGLNIAK----- 1352 (1522)
T ss_pred cEEEEEEEEEeCC----CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeE--EECCEEccc-----
Confidence 3667676666421 1236999999999999999999999999999999999999 899999 999999965
Q ss_pred cccChhhHHHhhcceEEecccccccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLSIHLF 174 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f~~lf 174 (176)
-....+|++|++|+|++ .+|
T Consensus 1353 -----i~~~~LR~~i~iVpQdp-~LF 1372 (1522)
T TIGR00957 1353 -----IGLHDLRFKITIIPQDP-VLF 1372 (1522)
T ss_pred -----cCHHHHHhcCeEECCCC-ccc
Confidence 46778889999999996 454
No 306
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.51 E-value=3.3e-14 Score=142.67 Aligned_cols=88 Identities=22% Similarity=0.108 Sum_probs=72.4
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-c----------------------
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-H---------------------- 127 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p---------------------- 127 (176)
++++++...|.-. ...++|+++||++++|+.++|+|+|||||||++++|.|+. |
T Consensus 1166 I~f~nVsF~Y~~~---~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~ 1242 (1466)
T PTZ00265 1166 IEIMDVNFRYISR---PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDY 1242 (1466)
T ss_pred EEEEEEEEECCCC---CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccc
Confidence 5555555553210 2357999999999999999999999999999999999998 7
Q ss_pred --------------------------------CCCeEEEEECCeeccCCcccCcccChhhHHHhhcceEEecccccccc
Q 030515 128 --------------------------------WRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGSVFVLSIHLF 174 (176)
Q Consensus 128 --------------------------------~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig~V~Q~f~~lf 174 (176)
++|+| .+||.+++. .+...+|++||+|+|++ .||
T Consensus 1243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I--~idG~di~~----------~~~~~lR~~i~~V~Qep-~LF 1308 (1466)
T PTZ00265 1243 QGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKI--LLDGVDICD----------YNLKDLRNLFSIVSQEP-MLF 1308 (1466)
T ss_pred ccccccccccccccccccccccccccccccCCCCCeE--EECCEEHHh----------CCHHHHHhhccEeCCCC-ccc
Confidence 58999 999999965 36777888999999996 555
No 307
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.50 E-value=2.8e-14 Score=138.97 Aligned_cols=88 Identities=27% Similarity=0.263 Sum_probs=73.5
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
++.+++..+|.- ..++.+++++||++++|++++|+|+|||||||++..|.|+. |++|+| ++||.++..
T Consensus 351 ief~nV~FsYPs---Rpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V--~idG~di~~------ 419 (1228)
T KOG0055|consen 351 IEFRNVCFSYPS---RPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEV--LIDGEDIRN------ 419 (1228)
T ss_pred eEEEEEEecCCC---CCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceE--EEcCccchh------
Confidence 445555544322 13568999999999999999999999999999999999999 999999 999999976
Q ss_pred ccChhhHHHhhcceEEecccccccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLSIHLF 174 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f~~lf 174 (176)
.+...+|.+||.|+|.+ -||
T Consensus 420 ----~~~~~lr~~iglV~QeP-vlF 439 (1228)
T KOG0055|consen 420 ----LNLKWLRSQIGLVSQEP-VLF 439 (1228)
T ss_pred ----cchHHHHhhcCeeeech-hhh
Confidence 47777888999999997 444
No 308
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.50 E-value=3e-14 Score=142.93 Aligned_cols=88 Identities=23% Similarity=0.203 Sum_probs=70.3
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEE-CCeeccCCcccC
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYIL-DGDNCRHGLNRD 148 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~l-dG~~v~~~~~~d 148 (176)
++++++...|+-. ..+.+++++||++++|++++|+|+||||||||+++|.|++ |++|+| ++ ||.++..
T Consensus 383 I~~~nVsf~Y~~~---~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I--~i~~g~~i~~----- 452 (1466)
T PTZ00265 383 IQFKNVRFHYDTR---KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDI--IINDSHNLKD----- 452 (1466)
T ss_pred EEEEEEEEEcCCC---CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeE--EEeCCcchhh-----
Confidence 5666666664210 1246999999999999999999999999999999999999 899999 89 5677753
Q ss_pred cccChhhHHHhhcceEEecccccccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLSIHLF 174 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f~~lf 174 (176)
.+...+|++||+|+|++ .+|
T Consensus 453 -----~~~~~lr~~Ig~V~Q~~-~LF 472 (1466)
T PTZ00265 453 -----INLKWWRSKIGVVSQDP-LLF 472 (1466)
T ss_pred -----CCHHHHHHhccEecccc-cch
Confidence 24556778899999986 444
No 309
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.50 E-value=4.8e-14 Score=127.53 Aligned_cols=70 Identities=23% Similarity=0.182 Sum_probs=59.9
Q ss_pred cceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceEEecc
Q 030515 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGSVFV 168 (176)
Q Consensus 90 ~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig~V~Q 168 (176)
.+++++||++++|++++|+|+||||||||+++|+|++ |++|+| +++|+++... ......+++++|++|
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i--~~~g~~~~~~---------~~~~~~~~~i~~~~q 335 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQV--YLDGKPIDIR---------SPRDAIRAGIMLCPE 335 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceE--EECCEECCCC---------CHHHHHhCCCEEcCc
Confidence 4799999999999999999999999999999999999 799999 8999987531 122334567999999
Q ss_pred cc
Q 030515 169 LS 170 (176)
Q Consensus 169 ~f 170 (176)
++
T Consensus 336 ~~ 337 (501)
T PRK11288 336 DR 337 (501)
T ss_pred CH
Confidence 75
No 310
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.50 E-value=3.7e-14 Score=128.27 Aligned_cols=70 Identities=21% Similarity=0.230 Sum_probs=59.9
Q ss_pred cceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceEEecc
Q 030515 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGSVFV 168 (176)
Q Consensus 90 ~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig~V~Q 168 (176)
.+++++||++++||+++|+|+||||||||+++|+|++ |++|+| .++|+++... . .....+++|+||+|
T Consensus 266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I--~~~g~~i~~~-------~--~~~~~~~~i~~v~q 334 (501)
T PRK10762 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYV--TLDGHEVVTR-------S--PQDGLANGIVYISE 334 (501)
T ss_pred CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEE--EECCEECCCC-------C--HHHHHHCCCEEecC
Confidence 3699999999999999999999999999999999999 799999 9999988542 1 12234567999999
Q ss_pred cc
Q 030515 169 LS 170 (176)
Q Consensus 169 ~f 170 (176)
++
T Consensus 335 ~~ 336 (501)
T PRK10762 335 DR 336 (501)
T ss_pred cc
Confidence 85
No 311
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.50 E-value=5.2e-14 Score=128.09 Aligned_cols=62 Identities=24% Similarity=0.216 Sum_probs=54.7
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECC
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDG 138 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG 138 (176)
.+++++++.+. |+...+++++||++++|++++|+|+||||||||+++|+|++ |++|+| .++|
T Consensus 318 ~~l~~~~l~~~------~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i--~~~~ 380 (530)
T PRK15064 318 NALEVENLTKG------FDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV--KWSE 380 (530)
T ss_pred ceEEEEeeEEe------eCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE--EECC
Confidence 46777777777 55567999999999999999999999999999999999998 799999 7765
No 312
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.50 E-value=4.5e-14 Score=128.52 Aligned_cols=60 Identities=20% Similarity=0.181 Sum_probs=53.0
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECC
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDG 138 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG 138 (176)
++++++++. |+..++++++||++++|++++|+|+||||||||+|+|+|++ |++|++ .++|
T Consensus 2 l~i~~ls~~------~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i--~~~~ 62 (530)
T PRK15064 2 LSTANITMQ------FGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNV--SLDP 62 (530)
T ss_pred EEEEEEEEE------eCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE--EecC
Confidence 556666666 56668999999999999999999999999999999999998 799999 7765
No 313
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.49 E-value=4.1e-14 Score=115.70 Aligned_cols=56 Identities=21% Similarity=0.190 Sum_probs=52.3
Q ss_pred ccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeecc
Q 030515 85 HKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCR 142 (176)
Q Consensus 85 ~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~ 142 (176)
+|+...+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|+++.
T Consensus 31 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i--~~~g~~~~ 87 (224)
T cd03220 31 EVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTV--TVRGRVSS 87 (224)
T ss_pred hcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EECCEEch
Confidence 488889999999999999999999999999999999999998 799999 89998754
No 314
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.48 E-value=8.9e-14 Score=142.48 Aligned_cols=86 Identities=16% Similarity=0.160 Sum_probs=71.5
Q ss_pred CcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcc
Q 030515 68 NNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLN 146 (176)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~ 146 (176)
..+++++++.+.|+- +.+.+++++||++++||+++|+|+||||||||+|+|+|++ |++|+| .++|+++..
T Consensus 1935 ~~~L~v~nLsK~Y~~----~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I--~i~G~~i~~--- 2005 (2272)
T TIGR01257 1935 TDILRLNELTKVYSG----TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDA--TVAGKSILT--- 2005 (2272)
T ss_pred CceEEEEEEEEEECC----CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEE--EECCEECcc---
Confidence 346788888887421 1257999999999999999999999999999999999999 899999 999999842
Q ss_pred cCcccChhhHHHhhcceEEecccc
Q 030515 147 RDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 147 ~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
+..+.+++|||++|+.
T Consensus 2006 --------~~~~~r~~IGy~pQ~~ 2021 (2272)
T TIGR01257 2006 --------NISDVHQNMGYCPQFD 2021 (2272)
T ss_pred --------hHHHHhhhEEEEeccc
Confidence 2334566799999975
No 315
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.48 E-value=9.1e-14 Score=127.26 Aligned_cols=61 Identities=23% Similarity=0.223 Sum_probs=54.1
Q ss_pred cEEEeccceeeeccccccC-cccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEEC
Q 030515 69 NLCQNSTVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILD 137 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~-~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ld 137 (176)
.+++++++++. |+ ...+++++||++++|++++|+|+||||||||+++|+|++ |++|+| .++
T Consensus 3 ~~i~~~nls~~------~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i--~~~ 65 (552)
T TIGR03719 3 YIYTMNRVSKV------VPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEA--RPA 65 (552)
T ss_pred EEEEEeeEEEe------cCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE--Eec
Confidence 46778888887 54 567999999999999999999999999999999999998 899999 664
No 316
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.48 E-value=3.7e-14 Score=127.99 Aligned_cols=74 Identities=35% Similarity=0.314 Sum_probs=66.9
Q ss_pred cccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceEEe
Q 030515 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGSV 166 (176)
Q Consensus 88 ~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig~V 166 (176)
.+++++++||++++||.++|+||||||||||+|+|.|.. |.+|.+ .+||.++.++ +++.+=++|||.
T Consensus 348 ~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~V--RLDga~l~qW----------d~e~lG~hiGYL 415 (580)
T COG4618 348 KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSV--RLDGADLRQW----------DREQLGRHIGYL 415 (580)
T ss_pred CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcE--EecchhhhcC----------CHHHhccccCcC
Confidence 458999999999999999999999999999999999998 799999 9999999876 666677899999
Q ss_pred cccccccc
Q 030515 167 FVLSIHLF 174 (176)
Q Consensus 167 ~Q~f~~lf 174 (176)
+|+- .||
T Consensus 416 PQdV-eLF 422 (580)
T COG4618 416 PQDV-ELF 422 (580)
T ss_pred cccc-eec
Confidence 9985 555
No 317
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=6.7e-14 Score=127.70 Aligned_cols=76 Identities=25% Similarity=0.197 Sum_probs=66.9
Q ss_pred cCcc-cceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcce
Q 030515 86 KNSV-DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRI 163 (176)
Q Consensus 86 ~~~~-~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrri 163 (176)
|.+- ++++++||++++|+.++|+|+||||||||+++|.|++ |+.|+| .+||.++... +....|+++
T Consensus 330 y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I--~vng~~l~~l----------~~~~~~k~i 397 (559)
T COG4988 330 YPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEI--RVNGIDLRDL----------SPEAWRKQI 397 (559)
T ss_pred cCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceE--EECCcccccc----------CHHHHHhHe
Confidence 5433 8999999999999999999999999999999999999 699999 9999998653 556677889
Q ss_pred EEecccccccc
Q 030515 164 GSVFVLSIHLF 174 (176)
Q Consensus 164 g~V~Q~f~~lf 174 (176)
++|.|++ ++|
T Consensus 398 ~~v~Q~p-~lf 407 (559)
T COG4988 398 SWVSQNP-YLF 407 (559)
T ss_pred eeeCCCC-ccc
Confidence 9999987 554
No 318
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.48 E-value=1.3e-13 Score=141.37 Aligned_cols=86 Identities=15% Similarity=0.130 Sum_probs=72.6
Q ss_pred CcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcc
Q 030515 68 NNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLN 146 (176)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~ 146 (176)
...++++++.+.|+ .+...+++++||++++||+++|+|+||||||||+++|+|++ |++|++ +++|.++..
T Consensus 926 ~~~L~I~nLsK~y~----~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I--~i~G~dI~~--- 996 (2272)
T TIGR01257 926 VPGVCVKNLVKIFE----PSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTV--LVGGKDIET--- 996 (2272)
T ss_pred CceEEEEeEEEEec----CCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEE--EECCEECcc---
Confidence 34688888888842 12467999999999999999999999999999999999999 899999 999999852
Q ss_pred cCcccChhhHHHhhcceEEecccc
Q 030515 147 RDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 147 ~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
+..+.|+++|+++|+.
T Consensus 997 --------~~~~~r~~IG~~pQ~~ 1012 (2272)
T TIGR01257 997 --------NLDAVRQSLGMCPQHN 1012 (2272)
T ss_pred --------hHHHHhhcEEEEecCC
Confidence 3445567899999985
No 319
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.47 E-value=7.8e-14 Score=114.34 Aligned_cols=50 Identities=34% Similarity=0.386 Sum_probs=46.6
Q ss_pred eecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccC
Q 030515 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH 143 (176)
Q Consensus 92 l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~ 143 (176)
++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|+++..
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~~~~ 51 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGV--ILEGKQITE 51 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE--EECCEECCC
Confidence 46899999999999999999999999999999999 799999 999998753
No 320
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.47 E-value=1.3e-13 Score=138.75 Aligned_cols=88 Identities=19% Similarity=0.180 Sum_probs=74.6
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeeccCCcccCc
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
.++++++..+|.- +...+|+++||++++||.++|+|+||||||||+++|.|+++.+|+| .+||.++..
T Consensus 1217 ~I~f~nVs~~Y~~----~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I--~IdG~di~~------ 1284 (1490)
T TIGR01271 1217 QMDVQGLTAKYTE----AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEI--QIDGVSWNS------ 1284 (1490)
T ss_pred eEEEEEEEEEeCC----CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEE--EECCEEccc------
Confidence 3667777666421 2357999999999999999999999999999999999999888999 999999965
Q ss_pred ccChhhHHHhhcceEEecccccccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLSIHLF 174 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f~~lf 174 (176)
.....+|++|++|+|++ .+|
T Consensus 1285 ----i~~~~lR~~is~IpQdp-~LF 1304 (1490)
T TIGR01271 1285 ----VTLQTWRKAFGVIPQKV-FIF 1304 (1490)
T ss_pred ----CCHHHHHhceEEEeCCC-ccC
Confidence 46777889999999997 454
No 321
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.47 E-value=1.2e-13 Score=128.64 Aligned_cols=62 Identities=21% Similarity=0.196 Sum_probs=54.6
Q ss_pred CCcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEE
Q 030515 67 GNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYIL 136 (176)
Q Consensus 67 g~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~l 136 (176)
+..+++++++.+. |+...+++++||++.+|++++|+|+||||||||+++|+|++ |++|+| .+
T Consensus 316 ~~~~l~~~~l~~~------~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i--~~ 378 (635)
T PRK11147 316 GKIVFEMENVNYQ------IDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRI--HC 378 (635)
T ss_pred CCceEEEeeeEEE------ECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE--EE
Confidence 3456777777776 56667999999999999999999999999999999999998 799999 66
No 322
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.46 E-value=9.8e-14 Score=125.96 Aligned_cols=69 Identities=17% Similarity=0.187 Sum_probs=58.7
Q ss_pred ceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceEEeccc
Q 030515 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGSVFVL 169 (176)
Q Consensus 91 ~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig~V~Q~ 169 (176)
+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|+++... . .....+++|+||+|.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i--~~~g~~i~~~-------~--~~~~~~~~i~~v~q~ 346 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRI--MLNGKEINAL-------S--TAQRLARGLVYLPED 346 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEE--EECCEECCCC-------C--HHHHHhCCcEECCCC
Confidence 589999999999999999999999999999999998 799999 9999988542 1 112244679999997
Q ss_pred c
Q 030515 170 S 170 (176)
Q Consensus 170 f 170 (176)
+
T Consensus 347 ~ 347 (510)
T PRK15439 347 R 347 (510)
T ss_pred h
Confidence 4
No 323
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.46 E-value=9.4e-14 Score=125.51 Aligned_cols=83 Identities=23% Similarity=0.221 Sum_probs=70.7
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
+++++++-.|+ ..+++++|+||++++|++++++||||+||||++|.|.++. -.+|.| .+||++|+.
T Consensus 538 i~fsnvtF~Y~-----p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI--~iDgqdIrn------ 604 (790)
T KOG0056|consen 538 IEFSNVTFAYD-----PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSI--TIDGQDIRN------ 604 (790)
T ss_pred EEEEEeEEecC-----CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceE--EEcCchHHH------
Confidence 44555555431 3578999999999999999999999999999999999998 689999 999999965
Q ss_pred ccChhhHHHhhcceEEecccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f 170 (176)
-....+|..||.|+|+-
T Consensus 605 ----vt~~SLRs~IGVVPQDt 621 (790)
T KOG0056|consen 605 ----VTQSSLRSSIGVVPQDT 621 (790)
T ss_pred ----HHHHHHHHhcCcccCcc
Confidence 46677888999999974
No 324
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.46 E-value=1.1e-13 Score=134.88 Aligned_cols=88 Identities=25% Similarity=0.236 Sum_probs=76.6
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
++++++.-.|.- ..++.+++|+||++++|+.++|+|||||||||+..+|.|.. |+.|.| .+||++++.
T Consensus 988 I~~~~V~F~YPs---RP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V--~IDg~dik~------ 1056 (1228)
T KOG0055|consen 988 IEFRNVSFAYPT---RPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKV--KIDGVDIKD------ 1056 (1228)
T ss_pred EEEeeeEeeCCC---CCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeE--EECCccccc------
Confidence 556666555431 35778999999999999999999999999999999999999 999999 999999976
Q ss_pred ccChhhHHHhhcceEEecccccccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLSIHLF 174 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f~~lf 174 (176)
-++..+|++||.|.|.| .||
T Consensus 1057 ----lnl~~LR~~i~lVsQEP-~LF 1076 (1228)
T KOG0055|consen 1057 ----LNLKWLRKQIGLVSQEP-VLF 1076 (1228)
T ss_pred ----CCHHHHHHhcceeccCc-hhh
Confidence 48888999999999998 565
No 325
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.45 E-value=1.9e-13 Score=125.18 Aligned_cols=62 Identities=18% Similarity=0.216 Sum_probs=54.3
Q ss_pred CcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEEC
Q 030515 68 NNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILD 137 (176)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ld 137 (176)
..+++++++.+. |+...+++++||++++|++++|+|+||||||||+++|+|++ |++|+| +++
T Consensus 320 ~~~l~~~~l~~~------~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i--~~~ 382 (552)
T TIGR03719 320 DKVIEAENLSKG------FGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI--KIG 382 (552)
T ss_pred CeEEEEeeEEEE------ECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEE--EEC
Confidence 346777777776 55567999999999999999999999999999999999998 799999 664
No 326
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.45 E-value=2.1e-13 Score=125.11 Aligned_cols=61 Identities=21% Similarity=0.217 Sum_probs=53.8
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEEC
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILD 137 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ld 137 (176)
.+++++++.+. |+...+++++||++++||+++|+|+||||||||+++|+|++ |++|+| .++
T Consensus 323 ~~l~~~~l~~~------~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i--~~~ 384 (556)
T PRK11819 323 KVIEAENLSKS------FGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTI--KIG 384 (556)
T ss_pred eEEEEEeEEEE------ECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE--EEC
Confidence 46777777766 56667999999999999999999999999999999999998 799999 664
No 327
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.45 E-value=5.7e-14 Score=119.00 Aligned_cols=69 Identities=29% Similarity=0.382 Sum_probs=59.4
Q ss_pred cCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceE
Q 030515 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIG 164 (176)
Q Consensus 86 ~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig 164 (176)
+....+++|+||++++|++++++|+||+||||++++|.|++ |++|++ .++|.+-. .+.++.-++++
T Consensus 34 ~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v--~V~G~~Pf-----------~~~~~~~~~~~ 100 (325)
T COG4586 34 ERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKV--RVNGKDPF-----------RRREEYLRSIG 100 (325)
T ss_pred hhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeE--EecCcCcc-----------hhHHHHHHHHH
Confidence 34567999999999999999999999999999999999998 999999 89887653 24555667788
Q ss_pred Eec
Q 030515 165 SVF 167 (176)
Q Consensus 165 ~V~ 167 (176)
+|+
T Consensus 101 ~v~ 103 (325)
T COG4586 101 LVM 103 (325)
T ss_pred HHh
Confidence 887
No 328
>PLN03211 ABC transporter G-25; Provisional
Probab=99.44 E-value=1.8e-13 Score=128.18 Aligned_cols=71 Identities=23% Similarity=0.244 Sum_probs=61.2
Q ss_pred cccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cC--CCeEEEEECCeeccCCcccCcccChhhHHHhh
Q 030515 84 WHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HW--RGKLTYILDGDNCRHGLNRDLSFKAEDRVENI 160 (176)
Q Consensus 84 ~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~--~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~r 160 (176)
..|+.+.+++++|+++++||+++|+||||||||||+++|+|.+ |. +|+| .+||+++.. +.+
T Consensus 76 ~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I--~inG~~~~~--------------~~~ 139 (659)
T PLN03211 76 RQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTI--LANNRKPTK--------------QIL 139 (659)
T ss_pred ccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEE--EECCEECch--------------hhc
Confidence 3467778999999999999999999999999999999999998 54 8999 999987631 234
Q ss_pred cceEEecccc
Q 030515 161 RRIGSVFVLS 170 (176)
Q Consensus 161 rrig~V~Q~f 170 (176)
++++||+|+.
T Consensus 140 ~~i~yv~Q~~ 149 (659)
T PLN03211 140 KRTGFVTQDD 149 (659)
T ss_pred cceEEECccc
Confidence 5799999985
No 329
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.44 E-value=1e-13 Score=116.05 Aligned_cols=46 Identities=30% Similarity=0.298 Sum_probs=42.1
Q ss_pred cCcc-cceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeE
Q 030515 86 KNSV-DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKL 132 (176)
Q Consensus 86 ~~~~-~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i 132 (176)
|+.. .+++++|+ +++|++++|+|+||||||||+++|+|++ |++|++
T Consensus 10 y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I 57 (255)
T cd03236 10 YGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKF 57 (255)
T ss_pred ecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceE
Confidence 5543 58999994 9999999999999999999999999999 899999
No 330
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.44 E-value=2.5e-13 Score=113.15 Aligned_cols=54 Identities=24% Similarity=0.203 Sum_probs=49.6
Q ss_pred cCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeec
Q 030515 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNC 141 (176)
Q Consensus 86 ~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v 141 (176)
+..+.+|+|+||++++||.++|+|.||||||||+|.|+|.+ |++|++ .++|+.-
T Consensus 37 ~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v--~v~G~v~ 91 (249)
T COG1134 37 VAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKV--KVTGKVA 91 (249)
T ss_pred cceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceE--EEcceEe
Confidence 45668999999999999999999999999999999999999 899999 8888653
No 331
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=99.44 E-value=2e-14 Score=112.80 Aligned_cols=71 Identities=65% Similarity=0.942 Sum_probs=61.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceEEeccccc
Q 030515 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGSVFVLSI 171 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig~V~Q~f~ 171 (176)
+|.++||+|+|||||||+++.|...|...|.-+|+|||+++++.+++|++|+.+++.+..|+++++...+.
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~ 71 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLA 71 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999888888899999999999999999999999999999988876543
No 332
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.44 E-value=3.7e-13 Score=114.36 Aligned_cols=62 Identities=27% Similarity=0.285 Sum_probs=53.0
Q ss_pred CCcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECC
Q 030515 67 GNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDG 138 (176)
Q Consensus 67 g~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG 138 (176)
+...++++++... ...+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|
T Consensus 36 ~~~~l~i~nls~~--------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I--~i~g 98 (282)
T cd03291 36 DDNNLFFSNLCLV--------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKI--KHSG 98 (282)
T ss_pred CCCeEEEEEEEEe--------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE--EECC
Confidence 3445777777653 146899999999999999999999999999999999998 799999 7776
No 333
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.42 E-value=2.6e-13 Score=108.28 Aligned_cols=56 Identities=23% Similarity=0.075 Sum_probs=49.5
Q ss_pred cccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeecc
Q 030515 84 WHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCR 142 (176)
Q Consensus 84 ~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~ 142 (176)
..|+...++++ +|++++||+++|+|+||||||||+++|+|++ |++|+| .++|..+.
T Consensus 8 ~~~~~~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~i~ 64 (177)
T cd03222 8 KRYGVFFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDND--EWDGITPV 64 (177)
T ss_pred EEECCEEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEE--EECCEEEE
Confidence 33777788888 4999999999999999999999999999999 799999 88887653
No 334
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.41 E-value=3.3e-13 Score=125.64 Aligned_cols=64 Identities=23% Similarity=0.235 Sum_probs=56.9
Q ss_pred CcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCe
Q 030515 68 NNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGD 139 (176)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~ 139 (176)
|.+++++++.+. |+...+++++||++++|++++|+|+||||||||+++|+|++ |++|+| .+++.
T Consensus 1 m~~l~i~~ls~~------~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I--~~~~~ 65 (635)
T PRK11147 1 MSLISIHGAWLS------FSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRI--IYEQD 65 (635)
T ss_pred CcEEEEeeEEEE------eCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEE--EeCCC
Confidence 346788888887 56668999999999999999999999999999999999998 799999 77763
No 335
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.41 E-value=5.3e-13 Score=124.49 Aligned_cols=63 Identities=29% Similarity=0.239 Sum_probs=55.2
Q ss_pred CCcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEEC
Q 030515 67 GNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILD 137 (176)
Q Consensus 67 g~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ld 137 (176)
+..+++++++.+. |+...+++++||++++|++++|+|+||||||||+++|+|++ |++|+| .++
T Consensus 309 ~~~~l~~~~l~~~------y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i--~~~ 372 (638)
T PRK10636 309 PNPLLKMEKVSAG------YGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEI--GLA 372 (638)
T ss_pred CCceEEEEeeEEE------eCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeE--EEC
Confidence 4456777777776 56668999999999999999999999999999999999999 799999 664
No 336
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=3.1e-13 Score=109.05 Aligned_cols=56 Identities=23% Similarity=0.300 Sum_probs=52.6
Q ss_pred cCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccC
Q 030515 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH 143 (176)
Q Consensus 86 ~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~ 143 (176)
.++...+.++||++.+||++.|.|+||||||||+|+|+|++ |++|+| +++|+++..
T Consensus 12 R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v--~~~~~~i~~ 68 (209)
T COG4133 12 RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEV--YWQGEPIQN 68 (209)
T ss_pred cCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeE--EecCCCCcc
Confidence 67778999999999999999999999999999999999999 899999 999888764
No 337
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.40 E-value=2e-13 Score=112.57 Aligned_cols=87 Identities=21% Similarity=0.213 Sum_probs=67.4
Q ss_pred EeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcc
Q 030515 72 QNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLS 150 (176)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~ 150 (176)
++.++.+.++-.. ..+.++++++|+++.+|+++.|+|-||||||||+++|+|-+ |++|+| .+||.+|.+.
T Consensus 3 ~~~~~~~~f~~g~-~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I--~Idg~dVtk~------ 73 (263)
T COG1101 3 SLSNATKTFFKGT-PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQI--LIDGVDVTKK------ 73 (263)
T ss_pred ccccceeeecCCC-hhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceE--EECceecccC------
Confidence 3444444443221 23568999999999999999999999999999999999998 899999 9999999874
Q ss_pred cChhhHHHhhcceEEeccccc
Q 030515 151 FKAEDRVENIRRIGSVFVLSI 171 (176)
Q Consensus 151 ~~~~~~~~~rrrig~V~Q~f~ 171 (176)
+ .......++-|||++.
T Consensus 74 -~---~~~RA~~larVfQdp~ 90 (263)
T COG1101 74 -S---VAKRANLLARVFQDPL 90 (263)
T ss_pred -C---HHHHhhHHHHHhcchh
Confidence 2 2222245788999863
No 338
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.40 E-value=3.6e-13 Score=125.57 Aligned_cols=61 Identities=21% Similarity=0.224 Sum_probs=54.7
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCe
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGD 139 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~ 139 (176)
+.++++++. |+...+++++||++++|++++|+|+||||||||+|+|+|++ |++|+| .++|.
T Consensus 2 i~i~nls~~------~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I--~~~~~ 63 (638)
T PRK10636 2 IVFSSLQIR------RGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSY--TFPGN 63 (638)
T ss_pred EEEEEEEEE------eCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE--EecCC
Confidence 556677777 77778999999999999999999999999999999999998 899999 77764
No 339
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.40 E-value=9.3e-13 Score=131.85 Aligned_cols=85 Identities=20% Similarity=0.231 Sum_probs=67.7
Q ss_pred CcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhccc----CCCeEEEEECCeeccC
Q 030515 68 NNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH----WRGKLTYILDGDNCRH 143 (176)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp----~~G~i~~~ldG~~v~~ 143 (176)
..+++.+++...+... .+...+|+++|+++++|++++|+|+||||||||+++|+|+++ ++|+| .+||+++..
T Consensus 757 ~~~l~~~nl~~~~~~~--~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I--~i~G~~~~~ 832 (1394)
T TIGR00956 757 EDIFHWRNLTYEVKIK--KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDR--LVNGRPLDS 832 (1394)
T ss_pred CceEEEEeeEEEecCC--CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEE--EECCEECCh
Confidence 3446666766654221 235679999999999999999999999999999999999983 67999 999988731
Q ss_pred CcccCcccChhhHHHhhcceEEecccc
Q 030515 144 GLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 144 ~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
.+++++|||+|+.
T Consensus 833 --------------~~~~~i~yv~Q~~ 845 (1394)
T TIGR00956 833 --------------SFQRSIGYVQQQD 845 (1394)
T ss_pred --------------hhhcceeeecccc
Confidence 2467899999975
No 340
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.38 E-value=9.3e-13 Score=110.75 Aligned_cols=51 Identities=33% Similarity=0.411 Sum_probs=47.1
Q ss_pred CcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCe
Q 030515 87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGD 139 (176)
Q Consensus 87 ~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~ 139 (176)
..+.+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|+
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I--~~~g~ 86 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKV--DRNGE 86 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEE--EECCE
Confidence 4557899999999999999999999999999999999998 799999 88885
No 341
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.38 E-value=1e-12 Score=97.27 Aligned_cols=64 Identities=27% Similarity=0.140 Sum_probs=52.7
Q ss_pred ccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceEEecc
Q 030515 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGSVFV 168 (176)
Q Consensus 89 ~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig~V~Q 168 (176)
+.++++++|++++|++++|+||||||||||++++. .|++ .++|+++..+ ...+..+.+++++|
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-----~G~i--~~~g~di~~~----------~~~~~~~~~~~~~q 64 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI-----KRKH--RLVGDDNVEI----------REDSKDELIGRNPE 64 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-----CCeE--EEeeEeHHHh----------hhhhcCCEEEEech
Confidence 46899999999999999999999999999999986 7888 8999998542 33334455778877
Q ss_pred c
Q 030515 169 L 169 (176)
Q Consensus 169 ~ 169 (176)
.
T Consensus 65 ~ 65 (107)
T cd00820 65 L 65 (107)
T ss_pred h
Confidence 6
No 342
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.38 E-value=5.7e-13 Score=108.74 Aligned_cols=57 Identities=28% Similarity=0.358 Sum_probs=49.6
Q ss_pred eEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceEEecccc
Q 030515 97 LLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 97 l~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
|++++||+++|+|+||||||||+++|+|++ |++|++ .++|+++. ..+++++|++|++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~~~---------------~~~~~i~~v~q~~ 58 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTV--KVAGASPG---------------KGWRHIGYVPQRH 58 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceE--EECCccch---------------HhhCcEEEecccc
Confidence 568999999999999999999999999998 799999 99998652 1246799999975
No 343
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.37 E-value=6.8e-13 Score=107.91 Aligned_cols=50 Identities=30% Similarity=0.264 Sum_probs=45.3
Q ss_pred cceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEE-ECCeec
Q 030515 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYI-LDGDNC 141 (176)
Q Consensus 90 ~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~-ldG~~v 141 (176)
++++++||++++|++++|+|+||||||||+++|+|++ |++|++ . ++++.+
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i--~~~~~~~~ 52 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDF--IGLRGDAL 52 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCE--EEecCcee
Confidence 3689999999999999999999999999999999998 799999 5 677654
No 344
>PLN03073 ABC transporter F family; Provisional
Probab=99.37 E-value=1.6e-12 Score=122.99 Aligned_cols=62 Identities=18% Similarity=0.070 Sum_probs=53.3
Q ss_pred CcEEEeccceeeeccccccC-cccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEEC
Q 030515 68 NNLCQNSTVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILD 137 (176)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~-~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ld 137 (176)
..+++++++.+. |+ ...+++++||++++|++++|+|+||||||||+++|+|++ |++|+| .++
T Consensus 506 ~~~L~~~~ls~~------y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I--~~~ 569 (718)
T PLN03073 506 PPIISFSDASFG------YPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV--FRS 569 (718)
T ss_pred CceEEEEeeEEE------eCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceE--EEC
Confidence 356777777776 43 346899999999999999999999999999999999999 799999 654
No 345
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.36 E-value=1.4e-12 Score=121.26 Aligned_cols=69 Identities=22% Similarity=0.153 Sum_probs=59.6
Q ss_pred CcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cC---CCeEEEEECCeeccCCcccCcccChhhHHHhhcc
Q 030515 87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HW---RGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRR 162 (176)
Q Consensus 87 ~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~---~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrr 162 (176)
+.+.+|+++|+++++||+++|+|+||||||||+++|.|.. |. +|++ .++|+++.. ...+++
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i--~~~g~~~~~-------------~~~~~~ 100 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSV--LLNGMPIDA-------------KEMRAI 100 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEE--EECCEECCH-------------HHHhhh
Confidence 4567999999999999999999999999999999999998 43 6899 999988631 235678
Q ss_pred eEEecccc
Q 030515 163 IGSVFVLS 170 (176)
Q Consensus 163 ig~V~Q~f 170 (176)
+|||+|+.
T Consensus 101 i~yv~Q~~ 108 (617)
T TIGR00955 101 SAYVQQDD 108 (617)
T ss_pred ceeecccc
Confidence 99999986
No 346
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.35 E-value=2.2e-12 Score=127.72 Aligned_cols=92 Identities=18% Similarity=0.168 Sum_probs=78.8
Q ss_pred cCCcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCC
Q 030515 66 SGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHG 144 (176)
Q Consensus 66 ~g~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~ 144 (176)
+....++++++.-+|. .+.-.+|+++||++++||-++|+|..|||||||+.+|.|+. |.+|+| .+||.++.+
T Consensus 1134 P~~G~I~f~~~~~RYr----p~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I--~IDgvdI~~- 1206 (1381)
T KOG0054|consen 1134 PSKGEIEFEDLSLRYR----PNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEI--LIDGVDISK- 1206 (1381)
T ss_pred CCCCeEEEEEeEEEeC----CCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeE--EEcCeeccc-
Confidence 3344577888777753 23448999999999999999999999999999999999999 799999 999999976
Q ss_pred cccCcccChhhHHHhhcceEEecccccccc
Q 030515 145 LNRDLSFKAEDRVENIRRIGSVFVLSIHLF 174 (176)
Q Consensus 145 ~~~d~~~~~~~~~~~rrrig~V~Q~f~~lf 174 (176)
-.+.++|++++.++|++ -||
T Consensus 1207 ---------igL~dLRsrlsIIPQdP-vLF 1226 (1381)
T KOG0054|consen 1207 ---------IGLHDLRSRLSIIPQDP-VLF 1226 (1381)
T ss_pred ---------ccHHHHHhcCeeeCCCC-cee
Confidence 48889999999999998 454
No 347
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.35 E-value=7.6e-13 Score=112.69 Aligned_cols=72 Identities=26% Similarity=0.293 Sum_probs=58.4
Q ss_pred cceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceEEecccccc
Q 030515 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGSVFVLSIH 172 (176)
Q Consensus 94 ~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig~V~Q~f~~ 172 (176)
+++|+....-+.+|.|+||||||||+++|+|++ |+.|+| .++|+.+... . ........+|+||||||+. .
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I--~lngr~L~Ds-~-----k~i~lp~~~RriGYVFQDA-R 86 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRI--ELNGRVLVDA-E-----KGIFLPPEKRRIGYVFQDA-R 86 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEE--EECCEEeecc-c-----CCcccChhhheeeeEeecc-c
Confidence 677888887899999999999999999999999 999999 9999988642 0 1123344568999999974 5
Q ss_pred cc
Q 030515 173 LF 174 (176)
Q Consensus 173 lf 174 (176)
||
T Consensus 87 LF 88 (352)
T COG4148 87 LF 88 (352)
T ss_pred cc
Confidence 55
No 348
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=8.8e-13 Score=119.71 Aligned_cols=88 Identities=25% Similarity=0.220 Sum_probs=70.7
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
.+++++++-+|. ..+.++++++||++.+||-++|+|+|||||||++..|.|.. |++|+| .++|.++.+.
T Consensus 336 ~l~~~~vsF~y~----~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i--~~~g~~~~~l---- 405 (573)
T COG4987 336 ALELRNVSFTYP----GQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSI--TLNGVEIASL---- 405 (573)
T ss_pred eeeeccceeecC----CCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCee--eECCcChhhC----
Confidence 466666666632 12446999999999999999999999999999999999998 899999 9999998764
Q ss_pred cccChhhHHHhhcceEEecccccccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLSIHLF 174 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f~~lf 174 (176)
++. .++..|+++.|.. ++|
T Consensus 406 ---~~~---~~~e~i~vl~Qr~-hlF 424 (573)
T COG4987 406 ---DEQ---ALRETISVLTQRV-HLF 424 (573)
T ss_pred ---Chh---hHHHHHhhhccch-HHH
Confidence 222 3455789999975 665
No 349
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.35 E-value=5.6e-13 Score=117.95 Aligned_cols=72 Identities=32% Similarity=0.441 Sum_probs=63.8
Q ss_pred cceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceEEecc
Q 030515 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGSVFV 168 (176)
Q Consensus 90 ~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig~V~Q 168 (176)
--+..||+++++||++-|+|.|||||||+++.|.|+. |++|+| ++||+.| +++.+++.|.-++-||-
T Consensus 337 FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I--~ldg~pV----------~~e~ledYR~LfSavFs 404 (546)
T COG4615 337 FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEI--LLDGKPV----------SAEQLEDYRKLFSAVFS 404 (546)
T ss_pred ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCce--eECCccC----------CCCCHHHHHHHHHHHhh
Confidence 4577999999999999999999999999999999999 999999 9999999 44677777777888888
Q ss_pred cccccc
Q 030515 169 LSIHLF 174 (176)
Q Consensus 169 ~f~~lf 174 (176)
++ +||
T Consensus 405 Dy-hLF 409 (546)
T COG4615 405 DY-HLF 409 (546)
T ss_pred hH-hhh
Confidence 76 666
No 350
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.35 E-value=7.4e-13 Score=119.61 Aligned_cols=68 Identities=15% Similarity=0.131 Sum_probs=56.8
Q ss_pred cceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCC-eEEEEECCeeccCCcccCcccChhhHHHhhcceEEec
Q 030515 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRG-KLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGSVF 167 (176)
Q Consensus 90 ~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G-~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig~V~ 167 (176)
.+|+++|+++++||+++|+|+||||||||+| ++++ |++| ++ .++|.++... +..++..+| +||
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I--~ldg~~~~~~-------~~~ai~~LR----~VF 84 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEF--FLDATHSFSP-------NKNAMETLD----EIF 84 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEE--EECCEECCCC-------CHHHHHHHH----HHH
Confidence 6799999999999999999999999999999 5665 7777 79 9999999754 445555555 999
Q ss_pred ccccc
Q 030515 168 VLSIH 172 (176)
Q Consensus 168 Q~f~~ 172 (176)
|.|..
T Consensus 85 Q~fn~ 89 (504)
T TIGR03238 85 DGFNQ 89 (504)
T ss_pred Hhhhc
Confidence 98743
No 351
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.34 E-value=9.1e-13 Score=107.40 Aligned_cols=84 Identities=18% Similarity=0.209 Sum_probs=71.1
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECC-eeccCCccc
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDG-DNCRHGLNR 147 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG-~~v~~~~~~ 147 (176)
.+.+++++.+ ++...++.++||++.+||.-+|+||||+||||++-.|.|.- |+.|++ +++| .++..+
T Consensus 5 iL~~~~vsVs------F~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v--~f~g~~dl~~~--- 73 (249)
T COG4674 5 ILYLDGVSVS------FGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEV--LFDGDTDLTKL--- 73 (249)
T ss_pred eEEEeceEEE------EcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceE--EEcCchhhccC---
Confidence 4556666655 78889999999999999999999999999999999999999 799999 9998 888764
Q ss_pred CcccChhhHHHhhcceEEecccc
Q 030515 148 DLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 148 d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
.+.+..|+.||--||-+
T Consensus 74 ------~e~~IAr~GIGRKFQ~P 90 (249)
T COG4674 74 ------PEHRIARAGIGRKFQKP 90 (249)
T ss_pred ------CHHHHHHhccCccccCC
Confidence 45555667799888864
No 352
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.32 E-value=3.7e-12 Score=116.62 Aligned_cols=63 Identities=21% Similarity=0.253 Sum_probs=53.3
Q ss_pred EEEeccceeeeccccccCc---ccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCee
Q 030515 70 LCQNSTVAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDN 140 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~---~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~ 140 (176)
++.++++... ++. ..+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|.+
T Consensus 21 mL~lknL~~~------~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI--~I~G~~ 87 (549)
T PRK13545 21 FDKLKDLFFR------SKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTV--DIKGSA 87 (549)
T ss_pred eeEEEEEEEe------cCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEE--EECCEe
Confidence 4556565544 333 46899999999999999999999999999999999999 799999 888865
No 353
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.32 E-value=4.4e-12 Score=118.73 Aligned_cols=73 Identities=19% Similarity=0.130 Sum_probs=58.7
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
.++++++...+. +...+++++||++++||+++|+|+||||||||+++|+|+. |+.|++ .+++
T Consensus 451 ~i~~~nv~~~~~-----~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i--~~~~---------- 513 (659)
T TIGR00954 451 GIKFENIPLVTP-----NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRL--TKPA---------- 513 (659)
T ss_pred eEEEEeeEEECC-----CCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeE--eecC----------
Confidence 356666666531 2447999999999999999999999999999999999998 688988 5532
Q ss_pred cccChhhHHHhhcceEEecccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f 170 (176)
++++++|+|++
T Consensus 514 -----------~~~i~~v~Q~~ 524 (659)
T TIGR00954 514 -----------KGKLFYVPQRP 524 (659)
T ss_pred -----------CCcEEEECCCC
Confidence 24688888875
No 354
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.29 E-value=4.3e-12 Score=101.18 Aligned_cols=47 Identities=30% Similarity=0.240 Sum_probs=41.8
Q ss_pred cccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCe
Q 030515 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139 (176)
Q Consensus 88 ~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~ 139 (176)
.+.+++++||++++|++++|+||||||||||++++. +++|++ .+++.
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il---~~~G~v--~~~~~ 53 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL---YASGKA--RLISF 53 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh---hcCCcE--EECCc
Confidence 457899999999999999999999999999999884 578998 77655
No 355
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.28 E-value=8.4e-12 Score=114.45 Aligned_cols=59 Identities=22% Similarity=0.211 Sum_probs=54.4
Q ss_pred CcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeE
Q 030515 68 NNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKL 132 (176)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i 132 (176)
|.++.++++++. |+...+++++||++++|+.++|+|+||||||||+++|.|.+ |++|+|
T Consensus 1 m~~i~~~~ls~~------~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i 60 (530)
T COG0488 1 MSMITLENLSLA------YGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV 60 (530)
T ss_pred CceEEEeeeEEe------eCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeE
Confidence 456778787777 78889999999999999999999999999999999999999 899999
No 356
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.28 E-value=7.9e-12 Score=104.06 Aligned_cols=50 Identities=26% Similarity=0.266 Sum_probs=42.7
Q ss_pred cceecceeEee-----CCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeec
Q 030515 90 DKRDRQQLLQQ-----KGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNC 141 (176)
Q Consensus 90 ~~l~~isl~v~-----~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v 141 (176)
..+++++|++. +||+++|+|+||||||||+++|+|++ |++|++ .++|+.+
T Consensus 8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i--~~~g~~i 63 (246)
T cd03237 8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDI--EIELDTV 63 (246)
T ss_pred cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeE--EECCceE
Confidence 35666777775 79999999999999999999999998 799999 8887544
No 357
>PRK13409 putative ATPase RIL; Provisional
Probab=99.28 E-value=1e-11 Score=115.22 Aligned_cols=62 Identities=24% Similarity=0.234 Sum_probs=52.6
Q ss_pred CCcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEEC
Q 030515 67 GNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILD 137 (176)
Q Consensus 67 g~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ld 137 (176)
+..+++++++.+. |+.. .++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++
T Consensus 337 ~~~~l~~~~ls~~------~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I--~~~ 399 (590)
T PRK13409 337 RETLVEYPDLTKK------LGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEV--DPE 399 (590)
T ss_pred CceEEEEcceEEE------ECCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EEe
Confidence 3456888888776 4443 389999999999999999999999999999999999 799999 553
No 358
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.25 E-value=1.1e-11 Score=124.31 Aligned_cols=70 Identities=19% Similarity=0.102 Sum_probs=58.9
Q ss_pred cccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-----cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcc
Q 030515 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-----HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRR 162 (176)
Q Consensus 88 ~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-----p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrr 162 (176)
.+++|+++|+++++||+++|+|+||||||||+++|+|++ |.+|+| .++|+++... ....+++
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I--~~~G~~~~~~-----------~~~~r~~ 139 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVI--TYDGITPEEI-----------KKHYRGD 139 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEE--EECCEehHHH-----------HhhcCce
Confidence 457999999999999999999999999999999999985 478999 9999887421 1234456
Q ss_pred eEEecccc
Q 030515 163 IGSVFVLS 170 (176)
Q Consensus 163 ig~V~Q~f 170 (176)
++||+|+.
T Consensus 140 i~yv~Q~d 147 (1394)
T TIGR00956 140 VVYNAETD 147 (1394)
T ss_pred eEEecccc
Confidence 99999975
No 359
>PLN03140 ABC transporter G family member; Provisional
Probab=99.23 E-value=1.2e-11 Score=124.33 Aligned_cols=68 Identities=16% Similarity=0.114 Sum_probs=59.1
Q ss_pred cccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cC---CCeEEEEECCeeccCCcccCcccChhhHHHhhcce
Q 030515 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HW---RGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRI 163 (176)
Q Consensus 88 ~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~---~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrri 163 (176)
.+.+|+++|+.+++|++++|+||||||||||+++|+|++ |+ +|+| .++|.++... . .++.+
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I--~~nG~~~~~~----------~---~~~~i 241 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEI--TYNGYRLNEF----------V---PRKTS 241 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEE--EECCEechhh----------c---cccee
Confidence 467999999999999999999999999999999999998 66 8999 8999887431 1 14679
Q ss_pred EEecccc
Q 030515 164 GSVFVLS 170 (176)
Q Consensus 164 g~V~Q~f 170 (176)
+||+|+.
T Consensus 242 ~yv~Q~d 248 (1470)
T PLN03140 242 AYISQND 248 (1470)
T ss_pred EEecccc
Confidence 9999975
No 360
>PRK13409 putative ATPase RIL; Provisional
Probab=99.23 E-value=5.4e-12 Score=117.01 Aligned_cols=57 Identities=25% Similarity=0.196 Sum_probs=49.5
Q ss_pred ccccCcc-cceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEE-----------ECCeecc
Q 030515 83 LWHKNSV-DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYI-----------LDGDNCR 142 (176)
Q Consensus 83 ~~~~~~~-~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~-----------ldG~~v~ 142 (176)
...|+.. .+|++++ .+++|++++|+|+||||||||+++|+|++ |+.|++ . ++|.++.
T Consensus 80 ~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i--~~~~~~~~~~~~~~G~~l~ 149 (590)
T PRK13409 80 VHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDY--EEEPSWDEVLKRFRGTELQ 149 (590)
T ss_pred eEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccc--cCCCcHHHHHHHhCChHHH
Confidence 3447764 5899999 89999999999999999999999999998 899999 6 6777664
No 361
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.2e-11 Score=109.90 Aligned_cols=72 Identities=25% Similarity=0.223 Sum_probs=65.4
Q ss_pred CcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceEE
Q 030515 87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGS 165 (176)
Q Consensus 87 ~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig~ 165 (176)
+..++++++||+++.|+.++|+|+||+||||++|.|.+++ +.+|.| .+||++++. .....+|+-||+
T Consensus 274 ~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I--~id~qdir~----------vtq~slR~aIg~ 341 (497)
T COG5265 274 PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSI--TIDGQDIRD----------VTQQSLRRAIGI 341 (497)
T ss_pred ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceE--EEcchhHHH----------hHHHHHHHHhCc
Confidence 4668999999999999999999999999999999999999 899999 999999964 456667788999
Q ss_pred ecccc
Q 030515 166 VFVLS 170 (176)
Q Consensus 166 V~Q~f 170 (176)
|+|+-
T Consensus 342 VPQDt 346 (497)
T COG5265 342 VPQDT 346 (497)
T ss_pred Ccccc
Confidence 99975
No 362
>PLN03140 ABC transporter G family member; Provisional
Probab=99.21 E-value=2.7e-11 Score=121.87 Aligned_cols=69 Identities=19% Similarity=0.169 Sum_probs=58.4
Q ss_pred CcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhccc---CCCeEEEEECCeeccCCcccCcccChhhHHHhhcce
Q 030515 87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH---WRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRI 163 (176)
Q Consensus 87 ~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp---~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrri 163 (176)
+...+|+++|+++++|++++|+|+||||||||+++|+|..+ .+|++ .++|.++.. ...++.+
T Consensus 891 ~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I--~inG~~~~~-------------~~~~~~i 955 (1470)
T PLN03140 891 DRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDI--RISGFPKKQ-------------ETFARIS 955 (1470)
T ss_pred CCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceE--EECCccCCh-------------HHhhhhe
Confidence 45679999999999999999999999999999999999873 57999 899876521 2345679
Q ss_pred EEecccc
Q 030515 164 GSVFVLS 170 (176)
Q Consensus 164 g~V~Q~f 170 (176)
|||+|+.
T Consensus 956 gyv~Q~d 962 (1470)
T PLN03140 956 GYCEQND 962 (1470)
T ss_pred EEEcccc
Confidence 9999975
No 363
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.20 E-value=2.7e-11 Score=100.23 Aligned_cols=95 Identities=19% Similarity=0.168 Sum_probs=71.1
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEE---EEECCeeccCCc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLT---YILDGDNCRHGL 145 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~---~~ldG~~v~~~~ 145 (176)
.++++.++....... .|.+.++|++|+++.+||+-+++|+||||||.++++|++...+.=.++ +.+++-++.++
T Consensus 2 ~LLDIrnL~IE~~Ts--qG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L- 78 (330)
T COG4170 2 PLLDIRNLTIEFKTS--QGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRL- 78 (330)
T ss_pred CcccccceEEEEecC--CCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcC-
Confidence 455666665554443 678899999999999999999999999999999999999874433331 25666665554
Q ss_pred ccCcccChhhHHHhh-cceEEecccccc
Q 030515 146 NRDLSFKAEDRVENI-RRIGSVFVLSIH 172 (176)
Q Consensus 146 ~~d~~~~~~~~~~~r-rrig~V~Q~f~~ 172 (176)
++.+++.+. +.|+|+||++..
T Consensus 79 ------~Pr~RRk~ig~~isMIFQeP~s 100 (330)
T COG4170 79 ------SPRERRKLVGHNVSMIFQEPQS 100 (330)
T ss_pred ------ChHHhhhhhccchhhhhcCchh
Confidence 666666666 459999998743
No 364
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.19 E-value=1.9e-11 Score=98.55 Aligned_cols=68 Identities=18% Similarity=0.177 Sum_probs=58.3
Q ss_pred cceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceEEeccc
Q 030515 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGSVFVL 169 (176)
Q Consensus 90 ~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig~V~Q~ 169 (176)
+.+-..|.++..||++-++||||||||||+..++|++|.+|+| .++|.++.. -+..++.|+-+|..|+
T Consensus 13 tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi--~~~G~~l~~----------~~~~eLArhRAYLsQq 80 (248)
T COG4138 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGSGSI--QFAGQPLEA----------WSATELARHRAYLSQQ 80 (248)
T ss_pred ccccccccccccceEEEEECCCCccHHHHHHHHhCCCCCCceE--EECCcchhH----------HhHhHHHHHHHHHhhc
Confidence 3456788899999999999999999999999999999999999 999999965 3555666666777774
No 365
>PLN03073 ABC transporter F family; Provisional
Probab=99.17 E-value=5.1e-11 Score=112.79 Aligned_cols=59 Identities=14% Similarity=0.070 Sum_probs=51.1
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhc----ccCCCeEE
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA----LHWRGKLT 133 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gl----lp~~G~i~ 133 (176)
.++.++++.+. |+...+++++||++.+|++++|+|+||||||||+|+|+|. +|..|+|.
T Consensus 176 ~~I~i~nls~~------y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~ 238 (718)
T PLN03073 176 KDIHMENFSIS------VGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQIL 238 (718)
T ss_pred eeEEEceEEEE------eCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEE
Confidence 34777777777 6666799999999999999999999999999999999984 47889994
No 366
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.16 E-value=8e-11 Score=109.70 Aligned_cols=69 Identities=28% Similarity=0.276 Sum_probs=59.7
Q ss_pred CcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhccc----CCCeEEEEECCeeccCCcccCcccChhhHHHhhcc
Q 030515 87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH----WRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRR 162 (176)
Q Consensus 87 ~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp----~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrr 162 (176)
..+++|+++|...++||+.+||||||||||||+.+|+|..+ ..|+| .+||+.. +.+..++.
T Consensus 41 ~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~i--lvNG~~~-------------~~~~~~~~ 105 (613)
T KOG0061|consen 41 KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEI--LLNGRPR-------------DSRSFRKI 105 (613)
T ss_pred ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEE--EECCccC-------------chhhhhhe
Confidence 35689999999999999999999999999999999999984 46999 9999654 44556678
Q ss_pred eEEecccc
Q 030515 163 IGSVFVLS 170 (176)
Q Consensus 163 ig~V~Q~f 170 (176)
.|||.|+-
T Consensus 106 s~yV~QdD 113 (613)
T KOG0061|consen 106 SGYVQQDD 113 (613)
T ss_pred eEEEcccc
Confidence 99999973
No 367
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.15 E-value=9e-11 Score=118.59 Aligned_cols=63 Identities=17% Similarity=0.251 Sum_probs=51.4
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDG 138 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG 138 (176)
.++++++...++ .....+++++||++++|++++|+|+||||||||+++|.|.+ |.+|++ .++|
T Consensus 636 ~i~~~~~~~~~~----~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i--~~~g 699 (1522)
T TIGR00957 636 SITVHNATFTWA----RDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV--HMKG 699 (1522)
T ss_pred cEEEEEeEEEcC----CCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEE--EECC
Confidence 355555555521 11346899999999999999999999999999999999999 799999 7765
No 368
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=99.14 E-value=4.3e-12 Score=111.29 Aligned_cols=74 Identities=53% Similarity=0.863 Sum_probs=69.9
Q ss_pred eeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceEEecccccc
Q 030515 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGSVFVLSIH 172 (176)
Q Consensus 99 v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig~V~Q~f~~ 172 (176)
.-+|+.+|++|+||+||||+.-+|+..+...|-..|.+||++|+++++++++|+++++.+..|||+.|...|++
T Consensus 47 gfrgctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~knlgfs~edreenirriaevaklfad 120 (627)
T KOG4238|consen 47 GFRGCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLNKNLGFSPEDREENIRRIAEVAKLFAD 120 (627)
T ss_pred CccceeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhhhccCCCchhHHHHHHHHHHHHHHHhc
Confidence 45789999999999999999999999998889999999999999999999999999999999999999998876
No 369
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.11 E-value=6e-11 Score=95.74 Aligned_cols=65 Identities=26% Similarity=0.309 Sum_probs=47.3
Q ss_pred ecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhccc-CCC---------eEEEEECCeeccCCcccCcccChhhHHHhhcc
Q 030515 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRG---------KLTYILDGDNCRHGLNRDLSFKAEDRVENIRR 162 (176)
Q Consensus 93 ~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp-~~G---------~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrr 162 (176)
+++++++.+| +++|+|+||||||||+++|+++++ ..| ++ .++|+++.. ...+++
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~-------------~~~~~~ 77 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDV--IFAGSETRK-------------PANFAE 77 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHH--hccCCCCCC-------------CCceEE
Confidence 5788999999 999999999999999999999984 433 23 333333211 112467
Q ss_pred eEEeccccccc
Q 030515 163 IGSVFVLSIHL 173 (176)
Q Consensus 163 ig~V~Q~f~~l 173 (176)
|++|||++..+
T Consensus 78 v~~vfq~~~~~ 88 (197)
T cd03278 78 VTLTFDNSDGR 88 (197)
T ss_pred EEEEEEcCCCc
Confidence 99999988543
No 370
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.10 E-value=2e-10 Score=105.39 Aligned_cols=61 Identities=26% Similarity=0.259 Sum_probs=53.9
Q ss_pred cCCcEEEeccceeeeccccccC-cccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeE
Q 030515 66 SGNNLCQNSTVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKL 132 (176)
Q Consensus 66 ~g~~~~~~~~~~~~~~~~~~~~-~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i 132 (176)
.+..+++++++.+. |+ ...+++++||.+++|+.++|+||||+|||||++.|.|.+ |.+|.+
T Consensus 317 ~g~~vl~~~~~~~~------y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v 379 (530)
T COG0488 317 LGKLVLEFENVSKG------YDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379 (530)
T ss_pred CCCeeEEEeccccc------cCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceE
Confidence 45667888888877 53 368999999999999999999999999999999999988 889988
No 371
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.08 E-value=1.9e-10 Score=116.07 Aligned_cols=48 Identities=27% Similarity=0.364 Sum_probs=45.0
Q ss_pred ccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECC
Q 030515 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDG 138 (176)
Q Consensus 89 ~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG 138 (176)
..+++++||++++|++++|+|+||||||||+++|.|++ |..|++ .++|
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i--~~~g 487 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKI--KHSG 487 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE--EECC
Confidence 46899999999999999999999999999999999999 799999 7765
No 372
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.07 E-value=1.7e-10 Score=111.32 Aligned_cols=85 Identities=15% Similarity=0.176 Sum_probs=69.9
Q ss_pred cEEEeccceeeeccccccCccc-ceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVD-KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLN 146 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~-~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~ 146 (176)
..+...++.+. |+... +++++|+.|++||++++.|+|||||||++++|.|.. |++|++ +++|.++...
T Consensus 563 ~~~~~~~L~k~------y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a--~i~g~~i~~~-- 632 (885)
T KOG0059|consen 563 SALVLNNLSKV------YGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEA--LIKGHDITVS-- 632 (885)
T ss_pred ceEEEcceeee------ecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceE--EEecCccccc--
Confidence 34556677777 44434 999999999999999999999999999999999999 899999 8899988642
Q ss_pred cCcccChhhHHHhhcceEEecccc
Q 030515 147 RDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 147 ~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
.+..+.++.|||++|.-
T Consensus 633 -------~~~~~~~~~iGyCPQ~d 649 (885)
T KOG0059|consen 633 -------TDFQQVRKQLGYCPQFD 649 (885)
T ss_pred -------cchhhhhhhcccCCchh
Confidence 24444667899999974
No 373
>PTZ00243 ABC transporter; Provisional
Probab=99.07 E-value=2.2e-10 Score=116.07 Aligned_cols=47 Identities=23% Similarity=0.249 Sum_probs=44.2
Q ss_pred cCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeE
Q 030515 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKL 132 (176)
Q Consensus 86 ~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i 132 (176)
++...+++++||++++|++++|+|+||||||||+++|.|.+ |++|++
T Consensus 670 ~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i 717 (1560)
T PTZ00243 670 LEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV 717 (1560)
T ss_pred cCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE
Confidence 45667999999999999999999999999999999999998 799998
No 374
>PLN03130 ABC transporter C family member; Provisional
Probab=99.07 E-value=2.4e-10 Score=116.07 Aligned_cols=59 Identities=20% Similarity=0.161 Sum_probs=48.1
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCC-CeE
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWR-GKL 132 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~-G~i 132 (176)
++++++...++. .....+++++||++++|+.++|+|+||||||||+++|.|.+ |.+ |++
T Consensus 615 I~~~nvsf~y~~---~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I 675 (1622)
T PLN03130 615 ISIKNGYFSWDS---KAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASV 675 (1622)
T ss_pred eEEEeeEEEccC---CCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceE
Confidence 556555555321 01356899999999999999999999999999999999999 788 888
No 375
>PLN03232 ABC transporter C family member; Provisional
Probab=99.05 E-value=2.6e-10 Score=115.14 Aligned_cols=59 Identities=24% Similarity=0.168 Sum_probs=47.4
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeE
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKL 132 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i 132 (176)
++++++.-.++. ..+..+|+|+||++++|+.++|+|+||||||||+++|.|.+ |.+|.+
T Consensus 615 I~~~~vsF~y~~---~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i 674 (1495)
T PLN03232 615 ISIKNGYFSWDS---KTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSS 674 (1495)
T ss_pred EEEEeeEEEcCC---CCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCE
Confidence 555555544321 01356899999999999999999999999999999999999 678866
No 376
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=99.00 E-value=9.3e-11 Score=92.73 Aligned_cols=80 Identities=60% Similarity=0.948 Sum_probs=61.2
Q ss_pred ccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceEEecc
Q 030515 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGSVFV 168 (176)
Q Consensus 89 ~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig~V~Q 168 (176)
++.-++.+...++|++++|+|++||||||+++.|.+.++..|.-++.+++++++..+.++.+++..++.+..++++.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (184)
T TIGR00455 5 ITKDERQALNGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKDLGFSEEDRKENIRRIGEVAK 84 (184)
T ss_pred CCHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccccCCCHHHHHHHHHHHHHHHH
Confidence 34445555677999999999999999999999999998655633348899999877777788877776665555555444
No 377
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.97 E-value=1.7e-10 Score=92.59 Aligned_cols=76 Identities=59% Similarity=0.946 Sum_probs=54.0
Q ss_pred ccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeeccCCcccCcccChhhHHH
Q 030515 83 LWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE 158 (176)
Q Consensus 83 ~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~ 158 (176)
.|..+.++.-+......++|++++|+|+|||||||+++.|.+.+...|..++.+||+++...+..++++...+..+
T Consensus 5 ~~~~~~v~~~~~~~~~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~~~~~~~~~~~ 80 (198)
T PRK03846 5 VWHQHPVTKAQREQLHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDLGFSDADRKE 80 (198)
T ss_pred ccccCCCCHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhcCCcCcccHHH
Confidence 3444455445555555689999999999999999999999998854443333999999876555556665544433
No 378
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.88 E-value=3.9e-09 Score=95.13 Aligned_cols=73 Identities=26% Similarity=0.158 Sum_probs=56.4
Q ss_pred CcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEEC---CeeccCCcccCcccChhhHHHhh-c
Q 030515 87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILD---GDNCRHGLNRDLSFKAEDRVENI-R 161 (176)
Q Consensus 87 ~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ld---G~~v~~~~~~d~~~~~~~~~~~r-r 161 (176)
..+.+++.++ .+.+|+.++|+|+||||||||+++|+++. |+.|.+ .+. |+++..+ .+..+...+ +
T Consensus 151 TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv--~liGergrev~e~-------~~~~l~~~r~r 220 (450)
T PRK06002 151 TGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVI--ALVGERGREVREF-------LEDTLADNLKK 220 (450)
T ss_pred CCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeee--eecccCCccHHHH-------hHHHHHHhhCC
Confidence 3467888885 89999999999999999999999999998 787866 664 5666543 333444444 4
Q ss_pred ceEEeccc
Q 030515 162 RIGSVFVL 169 (176)
Q Consensus 162 rig~V~Q~ 169 (176)
.|++|||.
T Consensus 221 tI~vV~qs 228 (450)
T PRK06002 221 AVAVVATS 228 (450)
T ss_pred eEEEEEcC
Confidence 69999995
No 379
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.85 E-value=2e-09 Score=88.32 Aligned_cols=33 Identities=33% Similarity=0.414 Sum_probs=30.9
Q ss_pred CcccceecceeEeeCCeEEEEEcCCCCcHHHHH
Q 030515 87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLA 119 (176)
Q Consensus 87 ~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLl 119 (176)
..+.+++++||++++||+++|+|+||||||||+
T Consensus 6 ~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 6 AREHNLKNVDVDIPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred chhhccccceeecCCCcEEEEEcCCCCCHHHHH
Confidence 456799999999999999999999999999996
No 380
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.83 E-value=1.5e-09 Score=85.10 Aligned_cols=65 Identities=51% Similarity=0.832 Sum_probs=46.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceE
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIG 164 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig 164 (176)
|+|++++|+|++||||||+++.|.+.+...|.-++++|++.++..+..++++..+++....++++
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~~~~~~~~~~r~~~~~~~~ 66 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSKGLGFSKEDRDTNIRRIG 66 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHhcCCCCChhhHHHHHHHHH
Confidence 68999999999999999999999999854443234689988765544455555555544433333
No 381
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.73 E-value=5.7e-09 Score=85.57 Aligned_cols=35 Identities=20% Similarity=0.132 Sum_probs=29.6
Q ss_pred cCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhc
Q 030515 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 86 ~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gl 125 (176)
|+...++++++ |++++|+||||||||||+++|.++
T Consensus 12 y~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~ 46 (243)
T cd03272 12 YKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFV 46 (243)
T ss_pred cccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHH
Confidence 56667777765 789999999999999999999844
No 382
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.66 E-value=3.2e-08 Score=83.99 Aligned_cols=57 Identities=23% Similarity=0.155 Sum_probs=47.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceEEecccc
Q 030515 103 CVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 103 eiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
.-++|+|+||||||||+++|.+++ |..|++ .++|+++... +++.++.+.+++++|+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i--~~~g~~v~~~---------d~~~ei~~~~~~~~q~~ 169 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQL--GLRGKKVGIV---------DERSEIAGCVNGVPQHD 169 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceE--EECCEEeecc---------hhHHHHHHHhccccccc
Confidence 568999999999999999999999 799999 9999999642 34556666788888853
No 383
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.65 E-value=2.5e-08 Score=98.42 Aligned_cols=71 Identities=23% Similarity=0.208 Sum_probs=60.8
Q ss_pred CcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc---cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcce
Q 030515 87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL---HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRI 163 (176)
Q Consensus 87 ~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll---p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrri 163 (176)
+..+.|++|+=-+.+|.+.+|||+|||||||||++|++.. -.+|+| .++|.... ..-++|++
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi--~i~G~p~~-------------q~tF~R~~ 866 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDI--LISGFPKD-------------QETFARVS 866 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEE--EECCeeCc-------------hhhhcccc
Confidence 5668999999999999999999999999999999999986 257888 99998763 25677899
Q ss_pred EEecccccc
Q 030515 164 GSVFVLSIH 172 (176)
Q Consensus 164 g~V~Q~f~~ 172 (176)
|||-|+-.|
T Consensus 867 GYvqQ~DiH 875 (1391)
T KOG0065|consen 867 GYVEQQDIH 875 (1391)
T ss_pred ceeeccccc
Confidence 999997544
No 384
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=98.62 E-value=9.8e-08 Score=87.91 Aligned_cols=65 Identities=32% Similarity=0.266 Sum_probs=51.6
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhccc-CCCeEEEEECC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDG 138 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp-~~G~i~~~ldG 138 (176)
.++++++.-... .+...+++++||+|.+|+-+.|+||||||||+|+|.+.|+-| ..|+++...+|
T Consensus 433 ~i~~e~v~l~tP----t~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~ 498 (659)
T KOG0060|consen 433 AIEFEEVSLSTP----TNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDG 498 (659)
T ss_pred eEEeeeeeecCC----CCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccC
Confidence 455555544421 124577899999999999999999999999999999999998 88999655565
No 385
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.62 E-value=4.7e-08 Score=77.66 Aligned_cols=37 Identities=30% Similarity=0.494 Sum_probs=32.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeecc
Q 030515 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~ 142 (176)
+|++++|+|+|||||||++++|++++.. + .++|+++.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~---~--~i~gd~~~ 38 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA---K--FIDGDDLH 38 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC---E--EECCcccC
Confidence 5899999999999999999999998832 3 78888874
No 386
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.59 E-value=1.4e-07 Score=73.94 Aligned_cols=31 Identities=32% Similarity=0.446 Sum_probs=26.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhcccCCCeE
Q 030515 102 GCVIWITGLSGSGKSTLACALSQALHWRGKL 132 (176)
Q Consensus 102 Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i 132 (176)
|++++|+|+|||||||++++|+.+++..|.+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~~~~ 31 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGDPRV 31 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcCCcE
Confidence 5789999999999999999999988544544
No 387
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.57 E-value=7.2e-08 Score=76.58 Aligned_cols=38 Identities=37% Similarity=0.576 Sum_probs=30.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeeccC
Q 030515 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH 143 (176)
Q Consensus 102 Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~~ 143 (176)
|++++|+|||||||||++++|.+.++. .+ .+.+..+..
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~--~~--~~~~~~~~~ 39 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT--QL--LVAHRYITR 39 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC--eE--EEcCEECCC
Confidence 689999999999999999999998732 34 666666643
No 388
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.57 E-value=2.3e-07 Score=84.56 Aligned_cols=68 Identities=29% Similarity=0.302 Sum_probs=58.4
Q ss_pred ceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceEEeccc
Q 030515 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGSVFVL 169 (176)
Q Consensus 91 ~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig~V~Q~ 169 (176)
.++|+||++++|||++|.|+-|||+|-++++|.|.. +..|+| .+||+.+... .....++..|+||+-+
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i--~l~G~~v~~~---------sp~~Ai~~Gi~~v~ED 342 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEI--LLDGKPVRIR---------SPRDAIKAGIAYVPED 342 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceE--EECCEEccCC---------CHHHHHHcCCEeCCcc
Confidence 578999999999999999999999999999999987 589999 9999998653 2444555678888864
No 389
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=98.57 E-value=3.8e-08 Score=85.03 Aligned_cols=35 Identities=34% Similarity=0.511 Sum_probs=31.9
Q ss_pred EEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccC
Q 030515 107 ITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH 143 (176)
Q Consensus 107 I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~ 143 (176)
|+|+||||||||+++|+|++ |++|+| .++|+++..
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I--~i~g~~i~~ 36 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSI--MLDGEDVTN 36 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEE--EECCEECCC
Confidence 68999999999999999999 799999 999988743
No 390
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=98.57 E-value=3.9e-08 Score=91.11 Aligned_cols=69 Identities=48% Similarity=0.693 Sum_probs=57.2
Q ss_pred eeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceEEec
Q 030515 99 QQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGSVF 167 (176)
Q Consensus 99 v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig~V~ 167 (176)
-++|+++||+|++||||||+++.|+..+ ...|..++++|++.+++.+.++.+|+..++....++++++.
T Consensus 389 ~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~ge~~f~~~er~~~~~~l~~~a 458 (568)
T PRK05537 389 HKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSSELGFSKEDRDLNILRIGFVA 458 (568)
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhccCCCCCCHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999998 45776555899999988788888998888777666665443
No 391
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.57 E-value=8.8e-08 Score=88.95 Aligned_cols=58 Identities=22% Similarity=0.225 Sum_probs=47.8
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhccc-CCCeE
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKL 132 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp-~~G~i 132 (176)
.+.++++.-.. ......+++.||++++|+-+.|.|+||||||||+|+|+|+=| -+|+|
T Consensus 392 ~i~~~nl~l~~-----p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I 450 (604)
T COG4178 392 GITLENLSLRT-----PDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRI 450 (604)
T ss_pred eeEEeeeeEEC-----CCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCce
Confidence 35555555442 223478999999999999999999999999999999999988 67888
No 392
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.55 E-value=3.4e-08 Score=81.93 Aligned_cols=59 Identities=24% Similarity=0.102 Sum_probs=40.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhcc-cC-CCeEEEEECCe-eccCCcccCcccChhhHHHhhcceEEecccc
Q 030515 102 GCVIWITGLSGSGKSTLACALSQAL-HW-RGKLTYILDGD-NCRHGLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 102 Geiv~I~G~SGSGKSTLlr~L~gll-p~-~G~i~~~ldG~-~v~~~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
+.+++|+|+||||||||+++|.+++ +. .|.+ ...+. ++.+. . ......+.+|+++||+.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~--r~~~~~~li~~-------~-~~~~~~~~~v~~~fq~~ 86 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTV--RASNLQDLIYK-------R-GQAGITKASVTIVFDNS 86 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccc--cccCHHHHhhc-------C-CCCCCcEEEEEEEEEcC
Confidence 5688999999999999999999999 54 4566 55554 33210 0 01111234799999984
No 393
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.54 E-value=2.5e-07 Score=92.47 Aligned_cols=64 Identities=23% Similarity=0.357 Sum_probs=51.1
Q ss_pred cEEEeccceeeecccccc-CcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhccc-CCCeEEEEECC
Q 030515 69 NLCQNSTVAKSTNILWHK-NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDG 138 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~-~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp-~~G~i~~~ldG 138 (176)
..+++++.+.. |.. +....|+|+||++++|+.++|+|+-|||||+|+.+|.|-++ .+|.+ .++|
T Consensus 517 ~~i~i~~~sfs----W~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v--~v~g 582 (1381)
T KOG0054|consen 517 NAIEIKNGSFS----WDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSV--AVNG 582 (1381)
T ss_pred ceEEEeeeeEe----cCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceE--EEcC
Confidence 34555555444 333 23448999999999999999999999999999999999994 89988 6654
No 394
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.51 E-value=7.8e-08 Score=76.55 Aligned_cols=44 Identities=27% Similarity=0.227 Sum_probs=36.6
Q ss_pred ecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECC
Q 030515 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDG 138 (176)
Q Consensus 93 ~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG 138 (176)
+=+.+.+++|+.++|+|++||||||++++|.+++ |+.|.+ .+++
T Consensus 16 ~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i--~ied 60 (186)
T cd01130 16 AYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERII--TIED 60 (186)
T ss_pred HHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEE--EECC
Confidence 3445668999999999999999999999999999 566776 5644
No 395
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.46 E-value=6.6e-08 Score=78.45 Aligned_cols=34 Identities=29% Similarity=0.404 Sum_probs=28.2
Q ss_pred ecceeEe-eCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 93 DRQQLLQ-QKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 93 ~~isl~v-~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
+.++|+. .+|++++|+|+|||||||++++|...+
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l 52 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYAL 52 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeE
Confidence 4556654 358999999999999999999999755
No 396
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.46 E-value=6.2e-07 Score=81.23 Aligned_cols=70 Identities=20% Similarity=0.362 Sum_probs=60.6
Q ss_pred ccCCcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeec
Q 030515 65 ISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNC 141 (176)
Q Consensus 65 ~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v 141 (176)
..|...+++++++... ......++++||++++|||++|.|-+|-|-+.|+.+|+|+. +..|+| .++|+++
T Consensus 252 ~pg~~vL~V~~L~v~~-----~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I--~l~G~~v 322 (501)
T COG3845 252 TPGEVVLEVEDLSVKD-----RRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRI--LLNGKDV 322 (501)
T ss_pred CCCCeEEEEeeeEeec-----CCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceE--EECCEec
Confidence 4466778888876653 22367899999999999999999999999999999999998 777999 9999997
No 397
>PRK08149 ATP synthase SpaL; Validated
Probab=98.44 E-value=2.4e-07 Score=83.30 Aligned_cols=74 Identities=20% Similarity=0.102 Sum_probs=55.9
Q ss_pred CcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCC---CeEEEEECCeeccCCcccCcccChhhHHHh-hc
Q 030515 87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWR---GKLTYILDGDNCRHGLNRDLSFKAEDRVEN-IR 161 (176)
Q Consensus 87 ~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~---G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~-rr 161 (176)
....+++++ +.+.+|+.++|+|+||+|||||+++|.+.. ++. |.| ..+|+++... .++.+... ++
T Consensus 137 tGi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~I--g~rg~ev~e~-------~~~~l~~~~~~ 206 (428)
T PRK08149 137 TGVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLI--GERGREVTEF-------VESLRASSRRE 206 (428)
T ss_pred CCcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEE--eeCCccHHHH-------HHHHhhccccc
Confidence 446789999 999999999999999999999999999987 454 555 7778877542 22233322 35
Q ss_pred ceEEecccc
Q 030515 162 RIGSVFVLS 170 (176)
Q Consensus 162 rig~V~Q~f 170 (176)
++++|+...
T Consensus 207 ~~~vV~~~s 215 (428)
T PRK08149 207 KCVLVYATS 215 (428)
T ss_pred ceEEEEECC
Confidence 688888643
No 398
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=98.41 E-value=1.4e-07 Score=72.75 Aligned_cols=55 Identities=67% Similarity=1.087 Sum_probs=41.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeeccCCcccCcccChhhHHH
Q 030515 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE 158 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~ 158 (176)
+++|+|++||||||+++.|.+.+...|.-++.++++.++..+..+.+++..++.+
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~~~~~~~~~~~ 55 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLGFSREDREE 55 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhccCCCcchHHH
Confidence 4789999999999999999999865553333789988876555555665544433
No 399
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.39 E-value=2.9e-07 Score=74.26 Aligned_cols=28 Identities=46% Similarity=0.573 Sum_probs=26.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhccc
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gllp 127 (176)
++|++++|+|+||||||||+++|.++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 6799999999999999999999999985
No 400
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.38 E-value=3.2e-07 Score=74.19 Aligned_cols=35 Identities=29% Similarity=0.250 Sum_probs=29.0
Q ss_pred cceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 90 ~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
.+.++++++ .|++++|+|||||||||++|+|++..
T Consensus 15 ~v~n~i~l~--~g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 15 RVANDIDME--KKNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred eecceEEEc--CCcEEEEECCCCCChHHHHHHHHHHH
Confidence 345666554 57999999999999999999999865
No 401
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.38 E-value=1.1e-07 Score=85.19 Aligned_cols=51 Identities=24% Similarity=0.179 Sum_probs=41.3
Q ss_pred ceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
++.+++.........+++|+||.+++|++++|+|.|||||||++|+|.|..
T Consensus 383 IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~ 433 (593)
T COG2401 383 ILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQ 433 (593)
T ss_pred HHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHh
Confidence 344444443344557899999999999999999999999999999999864
No 402
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.37 E-value=2.8e-07 Score=74.63 Aligned_cols=36 Identities=25% Similarity=0.223 Sum_probs=28.5
Q ss_pred eeEeeCCeEEEEEcCCCCcHHHHHHHHH----hcc-cCCCeE
Q 030515 96 QLLQQKGCVIWITGLSGSGKSTLACALS----QAL-HWRGKL 132 (176)
Q Consensus 96 sl~v~~Geiv~I~G~SGSGKSTLlr~L~----gll-p~~G~i 132 (176)
++++.+| +++|+|+||||||||+++|. |.. |..|.+
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~ 57 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGG 57 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccc
Confidence 3456667 99999999999999999995 666 455655
No 403
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.36 E-value=4.9e-07 Score=81.54 Aligned_cols=73 Identities=29% Similarity=0.183 Sum_probs=54.1
Q ss_pred cccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECC---eeccCCcccCcccChhhHHHhhcce
Q 030515 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDG---DNCRHGLNRDLSFKAEDRVENIRRI 163 (176)
Q Consensus 88 ~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG---~~v~~~~~~d~~~~~~~~~~~rrri 163 (176)
...+++++ |.+.+|++++|+|+||+|||||+++|+++. ++.|.+ .+.| +++......+ .....+++.|
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI--~~~Gerg~ev~e~~~~~-----l~~~~l~r~v 216 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVI--ALIGERGREVREFIERD-----LGPEGLKRSI 216 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEE--EEEecCCccHHHHHHhh-----cChhhhcCeE
Confidence 45788999 999999999999999999999999999998 688877 6644 4343221111 1222355678
Q ss_pred EEecc
Q 030515 164 GSVFV 168 (176)
Q Consensus 164 g~V~Q 168 (176)
.+|++
T Consensus 217 ~vv~~ 221 (438)
T PRK07721 217 VVVAT 221 (438)
T ss_pred EEEEC
Confidence 88876
No 404
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.36 E-value=3.9e-07 Score=82.25 Aligned_cols=54 Identities=26% Similarity=0.190 Sum_probs=41.7
Q ss_pred cccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEEC---Ceecc
Q 030515 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD---GDNCR 142 (176)
Q Consensus 88 ~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ld---G~~v~ 142 (176)
.+.+++.+ |.+.+|+.++|+|+||+|||||+++|++..+..+..++.+. |+++.
T Consensus 151 Gi~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~ 207 (442)
T PRK06315 151 GVRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVR 207 (442)
T ss_pred eEEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHH
Confidence 46788887 99999999999999999999999999998842221222663 45554
No 405
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.35 E-value=4.2e-07 Score=81.86 Aligned_cols=42 Identities=24% Similarity=0.140 Sum_probs=37.9
Q ss_pred CcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCC
Q 030515 87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWR 129 (176)
Q Consensus 87 ~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~ 129 (176)
..+.+++++ |++.+|++++|+|+||+|||||+++|++.. ++.
T Consensus 141 TGi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv 183 (434)
T PRK07196 141 VGVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADV 183 (434)
T ss_pred cceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCe
Confidence 346789999 999999999999999999999999999987 553
No 406
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.35 E-value=3.3e-07 Score=74.77 Aligned_cols=34 Identities=21% Similarity=0.109 Sum_probs=30.4
Q ss_pred cCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHh
Q 030515 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQ 124 (176)
Q Consensus 86 ~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~g 124 (176)
|+...+++++++ ++++|+|||||||||++++|..
T Consensus 14 ~~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~ 47 (212)
T cd03274 14 YAGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLF 47 (212)
T ss_pred CCCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHH
Confidence 677788888887 8999999999999999999873
No 407
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=98.35 E-value=2.5e-07 Score=83.55 Aligned_cols=75 Identities=17% Similarity=0.074 Sum_probs=54.2
Q ss_pred ccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCC---CeEEEEECCeeccCCcccCcccChhhHHHhhcceE
Q 030515 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWR---GKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIG 164 (176)
Q Consensus 89 ~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~---G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig 164 (176)
+.+++.+ |++.+|++++|+|+||+|||||+++|+++. |+. |.| .++|+++...+ +.....-.+..+
T Consensus 163 iraID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~I--gerg~ev~e~~-------~~~~~~~~~~~t 232 (455)
T PRK07960 163 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLI--GERGREVKDFI-------ENILGAEGRARS 232 (455)
T ss_pred ceeeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEE--EECCeEHHHHH-------HhhcCcCCCceE
Confidence 3455444 899999999999999999999999999988 553 666 77888875321 111112235689
Q ss_pred Eeccccccc
Q 030515 165 SVFVLSIHL 173 (176)
Q Consensus 165 ~V~Q~f~~l 173 (176)
+|||..++.
T Consensus 233 vVv~~~ad~ 241 (455)
T PRK07960 233 VVIAAPADV 241 (455)
T ss_pred EEEEECCCC
Confidence 999987653
No 408
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.33 E-value=7e-07 Score=71.28 Aligned_cols=28 Identities=43% Similarity=0.561 Sum_probs=26.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhccc
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gllp 127 (176)
++|++++|+|+||||||||+++|.+.+|
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 6899999999999999999999999874
No 409
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.33 E-value=3.1e-07 Score=71.93 Aligned_cols=46 Identities=48% Similarity=0.702 Sum_probs=36.8
Q ss_pred eeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeeccCC
Q 030515 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG 144 (176)
Q Consensus 99 v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~~~ 144 (176)
.++|.+++|.|+|||||||+++.|...+...+..+++++++.++..
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~ 49 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREI 49 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhh
Confidence 4788999999999999999999999988433333338898887653
No 410
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=98.28 E-value=1.8e-06 Score=71.55 Aligned_cols=66 Identities=21% Similarity=0.071 Sum_probs=52.4
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeec
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNC 141 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v 141 (176)
..++++++...|. ..-+.+.|+|++++.|..-.++|-||||||||++.|.|.- ...|.| .+.|++-
T Consensus 12 ~aievsgl~f~y~-----~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v--~Vlgrsa 78 (291)
T KOG2355|consen 12 FAIEVSGLQFKYK-----VSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVV--QVLGRSA 78 (291)
T ss_pred ceEEEeccEEecc-----cCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeE--EEcCcCc
Confidence 3467777776653 3348899999999999999999999999999999999975 555777 6666443
No 411
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.28 E-value=9e-07 Score=72.02 Aligned_cols=38 Identities=24% Similarity=0.073 Sum_probs=34.2
Q ss_pred cccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhc
Q 030515 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 88 ~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gl 125 (176)
...+.++++|+.++|++++|+||||+||||+++++.++
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34678899999999999999999999999999999854
No 412
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.27 E-value=1e-06 Score=70.79 Aligned_cols=32 Identities=22% Similarity=0.191 Sum_probs=29.4
Q ss_pred eecceeEeeCCe-EEEEEcCCCCcHHHHHHHHH
Q 030515 92 RDRQQLLQQKGC-VIWITGLSGSGKSTLACALS 123 (176)
Q Consensus 92 l~~isl~v~~Ge-iv~I~G~SGSGKSTLlr~L~ 123 (176)
..++||++.+|+ +++|+|||||||||++|+|+
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence 457899999995 89999999999999999999
No 413
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.27 E-value=6.7e-07 Score=75.56 Aligned_cols=33 Identities=30% Similarity=0.398 Sum_probs=30.6
Q ss_pred cceecceeEeeCCeEEEEEcCCCCcHHHHHHHH
Q 030515 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACAL 122 (176)
Q Consensus 90 ~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L 122 (176)
.-|++++++++.|++++|+|.||||||||++.+
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~ 41 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDT 41 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHH
Confidence 458899999999999999999999999999865
No 414
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.26 E-value=7.1e-07 Score=81.84 Aligned_cols=52 Identities=19% Similarity=0.179 Sum_probs=44.3
Q ss_pred ccccccCcc-cceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeE
Q 030515 81 NILWHKNSV-DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKL 132 (176)
Q Consensus 81 ~~~~~~~~~-~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i 132 (176)
|+.+.|.+. ....+++|-+..++.++++||||+|||||++.+.+.+ |..|.+
T Consensus 394 nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~v 447 (614)
T KOG0927|consen 394 NVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMV 447 (614)
T ss_pred ccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccc
Confidence 334445433 5778999999999999999999999999999999999 999987
No 415
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.26 E-value=4.2e-07 Score=84.98 Aligned_cols=86 Identities=53% Similarity=0.895 Sum_probs=62.8
Q ss_pred eeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeeccCCcccCcccChhhHH
Q 030515 78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV 157 (176)
Q Consensus 78 ~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~ 157 (176)
...+..|....+......+..-+++.+++++|++||||||+++.|...+...|..+++++++.++..+.++..++.+++.
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~~~~~~~~~r~ 515 (632)
T PRK05506 436 RATNVHWQASDVSREARAARKGQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRDLGFSDADRV 515 (632)
T ss_pred ccccccccccccCHHHHHHHhCCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCCCCCCCHHHHH
Confidence 34455565444444445555556799999999999999999999999885445544589999998888777788877666
Q ss_pred Hhhcce
Q 030515 158 ENIRRI 163 (176)
Q Consensus 158 ~~rrri 163 (176)
+..+++
T Consensus 516 ~~~~~l 521 (632)
T PRK05506 516 ENIRRV 521 (632)
T ss_pred HHHHHH
Confidence 554444
No 416
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.25 E-value=8.2e-07 Score=71.38 Aligned_cols=33 Identities=27% Similarity=0.286 Sum_probs=28.5
Q ss_pred ecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhc
Q 030515 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 93 ~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gl 125 (176)
-..++++.+|++++|+|+|||||||++++|.+.
T Consensus 20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHH
Confidence 345677788999999999999999999999943
No 417
>PLN02796 D-glycerate 3-kinase
Probab=98.25 E-value=6.2e-07 Score=78.59 Aligned_cols=51 Identities=27% Similarity=0.249 Sum_probs=39.6
Q ss_pred cceecceeEe---eCCe-----EEEEEcCCCCcHHHHHHHHHhcccC----CCeEEEEECCeecc
Q 030515 90 DKRDRQQLLQ---QKGC-----VIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCR 142 (176)
Q Consensus 90 ~~l~~isl~v---~~Ge-----iv~I~G~SGSGKSTLlr~L~gllp~----~G~i~~~ldG~~v~ 142 (176)
.+++++++.+ ++|+ +++|.|+||||||||++.|.+++.. .|.+ .+|+..+.
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~I--siDdfYLt 142 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASL--SIDDFYLT 142 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEE--EECCcccc
Confidence 5677887776 4454 5999999999999999999999943 3445 78887764
No 418
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.22 E-value=1.8e-06 Score=57.99 Aligned_cols=32 Identities=44% Similarity=0.499 Sum_probs=26.9
Q ss_pred ceeEeeC-CeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 95 QQLLQQK-GCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 95 isl~v~~-Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
..+++.+ |.++.|+|+|||||||++.++.-++
T Consensus 15 ~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 15 ETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred eEEeecCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4556654 5699999999999999999998877
No 419
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.19 E-value=1.5e-06 Score=79.77 Aligned_cols=59 Identities=15% Similarity=0.221 Sum_probs=50.0
Q ss_pred ccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeec
Q 030515 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNC 141 (176)
Q Consensus 81 ~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v 141 (176)
++.+.++...+++++++.+..|+.++|+|+|||||||+++.|.+++ |.+|+. .++...+
T Consensus 189 d~~~v~Gq~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e--~le~~~i 248 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEE--ALESAAI 248 (506)
T ss_pred CeEEEECcHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcE--EEecchh
Confidence 3444467778999999999999999999999999999999999999 588887 5665444
No 420
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.18 E-value=2.2e-06 Score=78.64 Aligned_cols=52 Identities=21% Similarity=0.194 Sum_probs=44.5
Q ss_pred ccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeE
Q 030515 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKL 132 (176)
Q Consensus 81 ~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i 132 (176)
++...+..+..++|..|++.+|+-++|+|+|||||||++++|.+.. |.+-++
T Consensus 80 sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~ 132 (614)
T KOG0927|consen 80 SLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHI 132 (614)
T ss_pred eeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCccc
Confidence 3333477889999999999999999999999999999999999987 755444
No 421
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.18 E-value=1.3e-06 Score=78.37 Aligned_cols=45 Identities=27% Similarity=0.175 Sum_probs=40.4
Q ss_pred CcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeE
Q 030515 87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKL 132 (176)
Q Consensus 87 ~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i 132 (176)
....+++++ |.+.+|+.++|+|+||+|||||+++|++.. ++.|.+
T Consensus 131 tG~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi 176 (422)
T TIGR02546 131 TGVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVI 176 (422)
T ss_pred CCceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEE
Confidence 346789999 999999999999999999999999999988 676666
No 422
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.15 E-value=2.2e-06 Score=70.32 Aligned_cols=34 Identities=35% Similarity=0.346 Sum_probs=29.9
Q ss_pred eeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeE
Q 030515 99 QQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKL 132 (176)
Q Consensus 99 v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i 132 (176)
-.+..+++|.|+||||||||+++|.+++ +..|.+
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~ 64 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELP 64 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCc
Confidence 3567899999999999999999999999 577773
No 423
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.09 E-value=3.9e-06 Score=73.13 Aligned_cols=45 Identities=29% Similarity=0.195 Sum_probs=40.0
Q ss_pred CcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeE
Q 030515 87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKL 132 (176)
Q Consensus 87 ~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i 132 (176)
..+.+++.+ +.+.+|+.++|+|+||+|||||+++|++.. ++.|.+
T Consensus 55 tGi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi 100 (326)
T cd01136 55 TGVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVI 100 (326)
T ss_pred CCcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEE
Confidence 346789999 999999999999999999999999999998 666655
No 424
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.09 E-value=2.8e-06 Score=72.12 Aligned_cols=29 Identities=31% Similarity=0.288 Sum_probs=24.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccCCCeE
Q 030515 104 VIWITGLSGSGKSTLACALSQALHWRGKL 132 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gllp~~G~i 132 (176)
+++|+|+|||||||++++|.++++..|-.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~ 29 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVT 29 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceE
Confidence 47999999999999999999999544443
No 425
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.07 E-value=3.2e-06 Score=66.02 Aligned_cols=26 Identities=50% Similarity=0.547 Sum_probs=24.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhccc
Q 030515 102 GCVIWITGLSGSGKSTLACALSQALH 127 (176)
Q Consensus 102 Geiv~I~G~SGSGKSTLlr~L~gllp 127 (176)
|++++|+|||||||||+++.|.+.+|
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 68999999999999999999999764
No 426
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.06 E-value=4.8e-06 Score=76.64 Aligned_cols=43 Identities=28% Similarity=0.332 Sum_probs=38.2
Q ss_pred cceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhccc-CCCeE
Q 030515 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKL 132 (176)
Q Consensus 90 ~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp-~~G~i 132 (176)
.++...+|++.+|--+.|+||||||||+|.|.|.|+-| ..|..
T Consensus 496 vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L 539 (728)
T KOG0064|consen 496 VLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLL 539 (728)
T ss_pred eeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCee
Confidence 46789999999999999999999999999999999887 45554
No 427
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.06 E-value=3.4e-06 Score=76.03 Aligned_cols=51 Identities=27% Similarity=0.256 Sum_probs=43.4
Q ss_pred CcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCee
Q 030515 87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDN 140 (176)
Q Consensus 87 ~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~ 140 (176)
..+.+++.+ +.+.+|+.++|+|+||+|||||+++|++.. ++.|.+ .+.|+.
T Consensus 141 tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi--~~iGeR 192 (433)
T PRK07594 141 TGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL--VLIGER 192 (433)
T ss_pred CCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEE--EEECCC
Confidence 457899999 999999999999999999999999999988 666544 555543
No 428
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.06 E-value=4.5e-06 Score=68.94 Aligned_cols=43 Identities=21% Similarity=0.186 Sum_probs=37.9
Q ss_pred cceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhc-c-cCCCeE
Q 030515 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA-L-HWRGKL 132 (176)
Q Consensus 90 ~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gl-l-p~~G~i 132 (176)
.+..++++++++|++++|+|+||+||||+++++++. + ++.|..
T Consensus 19 ~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~ 63 (222)
T cd03287 19 FVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSF 63 (222)
T ss_pred EEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCE
Confidence 567899999999999999999999999999999994 3 677754
No 429
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.04 E-value=5.3e-06 Score=74.94 Aligned_cols=51 Identities=24% Similarity=0.201 Sum_probs=43.7
Q ss_pred CcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCee
Q 030515 87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDN 140 (176)
Q Consensus 87 ~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~ 140 (176)
....+++++ +.+.+|+.++|+|+||+|||||+++|++.. ++.|.+ .+.|+.
T Consensus 149 TGi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi--~~iGer 200 (441)
T PRK09099 149 TGVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVI--ALIGER 200 (441)
T ss_pred CCceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEE--EEEccC
Confidence 456789999 999999999999999999999999999988 666655 666644
No 430
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.00 E-value=3.9e-06 Score=76.66 Aligned_cols=40 Identities=25% Similarity=0.253 Sum_probs=38.4
Q ss_pred ccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHh
Q 030515 85 HKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQ 124 (176)
Q Consensus 85 ~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~g 124 (176)
.||.+..|.+.++++..|..++++|+||+|||||+|+|..
T Consensus 89 a~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 89 AYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred eecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence 3899999999999999999999999999999999999987
No 431
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.00 E-value=6.7e-06 Score=75.52 Aligned_cols=42 Identities=31% Similarity=0.370 Sum_probs=37.9
Q ss_pred cccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 84 WHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 84 ~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
.+.|.++.+||+.+.. +|.+++|.|+|||||||+++.|+..+
T Consensus 267 ~~~g~~RLIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la~~l 308 (512)
T PRK13477 267 VRCGSTRLIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAKKL 308 (512)
T ss_pred EEeCCeEEEeeeEecc-CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578899999999977 88999999999999999999999755
No 432
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.98 E-value=1e-05 Score=70.11 Aligned_cols=40 Identities=28% Similarity=0.421 Sum_probs=32.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeec
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNC 141 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v 141 (176)
.+|++++|+|||||||||++..|++.+ +..+++ .+.+.+.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V--~Li~~D~ 152 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKV--LLAAGDT 152 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeE--EEEecCc
Confidence 578999999999999999999999998 555677 4433343
No 433
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.98 E-value=6.6e-06 Score=70.61 Aligned_cols=33 Identities=33% Similarity=0.277 Sum_probs=28.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhcc---cCCCeE
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQAL---HWRGKL 132 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gll---p~~G~i 132 (176)
+...+++|.|+|||||||++++|.+++ |..|.+
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V 95 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKV 95 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCce
Confidence 556899999999999999999999988 356776
No 434
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.98 E-value=5.5e-06 Score=71.16 Aligned_cols=38 Identities=26% Similarity=0.250 Sum_probs=33.1
Q ss_pred ceeEeeCCeEEEEEcCCCCcHHHHHHHHHhccc-CCCeE
Q 030515 95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKL 132 (176)
Q Consensus 95 isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp-~~G~i 132 (176)
+++.++.|+.++|+|++||||||++++|.+++| ..+.+
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv 175 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERII 175 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEE
Confidence 456788999999999999999999999999995 55555
No 435
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.97 E-value=7.7e-06 Score=73.45 Aligned_cols=52 Identities=29% Similarity=0.185 Sum_probs=42.8
Q ss_pred CcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeec
Q 030515 87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNC 141 (176)
Q Consensus 87 ~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v 141 (176)
..+.+++ .+|.+.+|+.++|+|+||+|||||+++|++.. |+.|.+ .+.|+.-
T Consensus 126 tGi~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi--~~iGer~ 178 (418)
T TIGR03498 126 TGVRVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVI--ALVGERG 178 (418)
T ss_pred CccEEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEE--EEEeeec
Confidence 3445665 68999999999999999999999999999998 777766 6665543
No 436
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.97 E-value=9.5e-06 Score=66.72 Aligned_cols=34 Identities=26% Similarity=0.215 Sum_probs=31.4
Q ss_pred cceecceeEeeCCeEEEEEcCCCCcHHHHHHHHH
Q 030515 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALS 123 (176)
Q Consensus 90 ~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~ 123 (176)
.+.++++++..++++++|+|||||||||+++++.
T Consensus 18 ~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~ 51 (222)
T cd03285 18 FIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIG 51 (222)
T ss_pred eEEeeEEEeecCCeEEEEECCCCCChHHHHHHHH
Confidence 5688999999999999999999999999999875
No 437
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.95 E-value=6.3e-06 Score=65.68 Aligned_cols=23 Identities=48% Similarity=0.615 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
+++|.|+|||||||++++|.+++
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999999988
No 438
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.95 E-value=6.8e-06 Score=66.11 Aligned_cols=28 Identities=43% Similarity=0.558 Sum_probs=25.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhccc
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gllp 127 (176)
.++.+++|.|+||||||||++.|.+.++
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5788999999999999999999999883
No 439
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=97.94 E-value=8.2e-06 Score=66.79 Aligned_cols=34 Identities=24% Similarity=0.247 Sum_probs=30.2
Q ss_pred cceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHh
Q 030515 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQ 124 (176)
Q Consensus 90 ~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~g 124 (176)
.+..+++++.++ ++++|+|||||||||++|++++
T Consensus 19 ~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 19 FVPNDTELDPER-QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHH
Confidence 467788888877 9999999999999999999975
No 440
>PRK01889 GTPase RsgA; Reviewed
Probab=97.94 E-value=8.8e-06 Score=71.45 Aligned_cols=46 Identities=30% Similarity=0.250 Sum_probs=38.6
Q ss_pred eecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCe
Q 030515 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGD 139 (176)
Q Consensus 92 l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~ 139 (176)
++.+.-.+.+|++++|+|+||+|||||+++|.+.. +..|++ .+++.
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i--~~~~~ 231 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAV--REDDS 231 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeE--EECCC
Confidence 34444457789999999999999999999999988 788999 77654
No 441
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.92 E-value=1.4e-05 Score=71.77 Aligned_cols=52 Identities=27% Similarity=0.210 Sum_probs=44.4
Q ss_pred CcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeec
Q 030515 87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNC 141 (176)
Q Consensus 87 ~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v 141 (176)
....+++.+ +.+.+|+.++|+|+||+|||||+++|++.. ++.|.+ .+.|+.-
T Consensus 123 tGi~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi--~~~Ger~ 175 (413)
T TIGR03497 123 TGIKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVI--ALIGERG 175 (413)
T ss_pred ccceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEE--EEEccch
Confidence 346789999 999999999999999999999999999988 677766 6666554
No 442
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=97.92 E-value=8.8e-06 Score=67.44 Aligned_cols=30 Identities=40% Similarity=0.411 Sum_probs=25.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc-cCCCeE
Q 030515 103 CVIWITGLSGSGKSTLACALSQAL-HWRGKL 132 (176)
Q Consensus 103 eiv~I~G~SGSGKSTLlr~L~gll-p~~G~i 132 (176)
.+.+|+|+||||||||+.+|.+++ +..|.+
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~ 53 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHL 53 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccc
Confidence 388999999999999999999988 555544
No 443
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=97.92 E-value=9.1e-06 Score=83.43 Aligned_cols=44 Identities=23% Similarity=0.282 Sum_probs=36.8
Q ss_pred cCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeE
Q 030515 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKL 132 (176)
Q Consensus 86 ~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i 132 (176)
++....++++||++++|++++|+|+||||||||+..+ +...|++
T Consensus 945 ~~~~~~lk~isl~i~~gei~~itG~nGsGKStL~~~~---L~~~G~~ 988 (1809)
T PRK00635 945 NAYQHNLKHIDLSLPRNALTAVTGPSASGKHSLVFDI---LYAAGNI 988 (1809)
T ss_pred ccccccccceeEEecCCcEEEEECCCCCChhHHHHHH---HHhhccE
Confidence 4444569999999999999999999999999988766 3237877
No 444
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.92 E-value=8.7e-06 Score=66.87 Aligned_cols=36 Identities=33% Similarity=0.299 Sum_probs=27.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc-c--CCCeEE-EEECCe
Q 030515 104 VIWITGLSGSGKSTLACALSQAL-H--WRGKLT-YILDGD 139 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll-p--~~G~i~-~~ldG~ 139 (176)
+++|.|+|||||||+++.|.+++ + ..+.+. +..|+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f 40 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF 40 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence 57999999999999999999998 3 445552 233553
No 445
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.91 E-value=2.2e-05 Score=56.18 Aligned_cols=38 Identities=47% Similarity=0.670 Sum_probs=30.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhcccCCC--eEEEEECCeec
Q 030515 102 GCVIWITGLSGSGKSTLACALSQALHWRG--KLTYILDGDNC 141 (176)
Q Consensus 102 Geiv~I~G~SGSGKSTLlr~L~gllp~~G--~i~~~ldG~~v 141 (176)
+..+.|.||+||||||+++.|...+...+ -+ +++....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~--~~~~~~~ 41 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVI--YIDGEDI 41 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEE--EECCEEc
Confidence 56789999999999999999999986553 44 6666554
No 446
>PRK08233 hypothetical protein; Provisional
Probab=97.91 E-value=2e-05 Score=61.26 Aligned_cols=37 Identities=35% Similarity=0.412 Sum_probs=28.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCe
Q 030515 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~ 139 (176)
++.+++|.|++||||||+++.|...++...-+ .+|..
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~--~~d~~ 38 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKAL--YFDRY 38 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCCCceE--EECCE
Confidence 35789999999999999999999988643323 55544
No 447
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=97.91 E-value=8.9e-06 Score=74.53 Aligned_cols=54 Identities=20% Similarity=0.285 Sum_probs=46.9
Q ss_pred cCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeec
Q 030515 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNC 141 (176)
Q Consensus 86 ~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v 141 (176)
+|+..+++.+++.+..|+.+.|+|+|||||||++++|.+++ |.+|++ .+++..+
T Consensus 195 ~Gq~~~~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~--~le~~~i 249 (499)
T TIGR00368 195 KGQQHAKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEE--AIETARI 249 (499)
T ss_pred cCcHHHHhhhhhhccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcE--EEecccc
Confidence 56778889999999999999999999999999999999999 578887 6665554
No 448
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.90 E-value=1.1e-05 Score=72.98 Aligned_cols=44 Identities=32% Similarity=0.203 Sum_probs=39.0
Q ss_pred cccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeE
Q 030515 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKL 132 (176)
Q Consensus 88 ~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i 132 (176)
...+++.+ +.+.+|+.++|+|+||+|||||+++|++.. ++.+.+
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi 194 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVI 194 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEE
Confidence 46788888 999999999999999999999999999988 565544
No 449
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.88 E-value=1e-05 Score=69.18 Aligned_cols=49 Identities=33% Similarity=0.333 Sum_probs=40.3
Q ss_pred ccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEEC
Q 030515 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD 137 (176)
Q Consensus 89 ~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ld 137 (176)
..+++++++...++.+++|+|++||||||++..+.+.+...|.-+..++
T Consensus 21 ~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~ 69 (300)
T TIGR00750 21 KQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIA 69 (300)
T ss_pred HHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3578899999999999999999999999999999998854554433443
No 450
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.88 E-value=1.2e-05 Score=73.00 Aligned_cols=54 Identities=24% Similarity=0.191 Sum_probs=46.1
Q ss_pred eecccccc-CcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeE
Q 030515 79 STNILWHK-NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKL 132 (176)
Q Consensus 79 ~~~~~~~~-~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i 132 (176)
..++++.| +..+....++|-|.=-..++|+||||.|||||+++|.|.+ |..|+.
T Consensus 589 lH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~ 644 (807)
T KOG0066|consen 589 LHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGEL 644 (807)
T ss_pred cccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchh
Confidence 34455556 6778888999988888999999999999999999999999 988875
No 451
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.87 E-value=1e-05 Score=78.86 Aligned_cols=31 Identities=39% Similarity=0.438 Sum_probs=29.4
Q ss_pred cceecceeEeeCCeEEEEEcCCCCcHHHHHH
Q 030515 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLAC 120 (176)
Q Consensus 90 ~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr 120 (176)
..|+++||++++|++++|+|+||||||||++
T Consensus 621 ~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~ 651 (924)
T TIGR00630 621 NNLKNITVSIPLGLFTCITGVSGSGKSTLIN 651 (924)
T ss_pred CCcCceEEEEeCCCEEEEECCCCCCHHHHHH
Confidence 3589999999999999999999999999998
No 452
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.87 E-value=1.5e-05 Score=62.40 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=29.1
Q ss_pred ceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHh
Q 030515 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQ 124 (176)
Q Consensus 91 ~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~g 124 (176)
+++++++..+++++ +|+|++|||||||++.+.+
T Consensus 9 ~~~~~~~~~~~~ki-~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 9 VLSSLGLYNKEAKI-LFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred HHHHhhcccCCCEE-EEECCCCCCHHHHHHHHhc
Confidence 47778888777777 9999999999999999987
No 453
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=97.87 E-value=1.3e-05 Score=72.24 Aligned_cols=52 Identities=31% Similarity=0.217 Sum_probs=43.4
Q ss_pred cccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeecc
Q 030515 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCR 142 (176)
Q Consensus 88 ~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~ 142 (176)
...+++++ +++.+|++++|+|+||+|||||+++|++.. ++.+.+ .+.|+.-+
T Consensus 144 gi~aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~vi--~~iGergr 196 (434)
T PRK08472 144 GVKSIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVV--ALIGERGR 196 (434)
T ss_pred hhHHhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccCCCEEEE--EeeCccch
Confidence 45689999 999999999999999999999999999877 555555 66666544
No 454
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=97.86 E-value=1.3e-05 Score=62.42 Aligned_cols=33 Identities=36% Similarity=0.385 Sum_probs=26.7
Q ss_pred ecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 93 ~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
++..++..+| +.+|+|+||+||||++.+|.-.+
T Consensus 11 ~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~~~L 43 (202)
T PF13476_consen 11 KDLEIDFSPG-LNVIYGPNGSGKSTILEAIRYAL 43 (202)
T ss_dssp EEEEEE--SE-EEEEEESTTSSHHHHHHHHHHHH
T ss_pred cceEEEcCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence 5566677665 88999999999999999998877
No 455
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=97.85 E-value=1.5e-05 Score=72.35 Aligned_cols=40 Identities=30% Similarity=0.292 Sum_probs=33.3
Q ss_pred eecceeEe-----eCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCe
Q 030515 92 RDRQQLLQ-----QKGCVIWITGLSGSGKSTLACALSQAL-HWRGK 131 (176)
Q Consensus 92 l~~isl~v-----~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~ 131 (176)
+.+..|++ ..||+++++||||-||||++++|+|.+ |++|.
T Consensus 352 ~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~ 397 (591)
T COG1245 352 YGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS 397 (591)
T ss_pred cCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC
Confidence 34455544 567899999999999999999999999 99883
No 456
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.84 E-value=1.2e-05 Score=58.59 Aligned_cols=23 Identities=61% Similarity=0.767 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
+++|.|+|||||||+++.|+..+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999865
No 457
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.83 E-value=2e-05 Score=70.60 Aligned_cols=44 Identities=25% Similarity=0.115 Sum_probs=38.5
Q ss_pred cccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeE
Q 030515 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKL 132 (176)
Q Consensus 88 ~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i 132 (176)
...+++.+ +.+.+|+.++|+|+||+|||||+++|++.. |+.+.+
T Consensus 124 Gi~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~vi 168 (411)
T TIGR03496 124 GVRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVVV 168 (411)
T ss_pred eEEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCCCCEEEE
Confidence 46778888 999999999999999999999999999988 665444
No 458
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.83 E-value=1.5e-05 Score=61.49 Aligned_cols=33 Identities=42% Similarity=0.747 Sum_probs=27.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeecc
Q 030515 105 IWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (176)
Q Consensus 105 v~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~ 142 (176)
+.|+|++||||||+++.|.+.+ |.. +++++++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l---~~~--~v~~D~~~ 33 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL---GAK--FIEGDDLH 33 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc---CCe--EEeCcccc
Confidence 3689999999999999999976 344 77887764
No 459
>PRK09183 transposase/IS protein; Provisional
Probab=97.81 E-value=1.1e-05 Score=67.83 Aligned_cols=47 Identities=23% Similarity=0.200 Sum_probs=37.1
Q ss_pred cceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEEC
Q 030515 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD 137 (176)
Q Consensus 90 ~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ld 137 (176)
..|.+++| +.+|+.+.|+||+|+|||+|+++|.......|.-+++++
T Consensus 91 ~~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~ 137 (259)
T PRK09183 91 QSLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT 137 (259)
T ss_pred HHHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 45677788 999999999999999999999999776655564333444
No 460
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.81 E-value=2.5e-05 Score=77.77 Aligned_cols=66 Identities=21% Similarity=0.254 Sum_probs=55.1
Q ss_pred ccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhccc----CCCeEEEEECCeeccCCcccCcccChhhHHHhhcceE
Q 030515 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH----WRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIG 164 (176)
Q Consensus 89 ~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp----~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig 164 (176)
..+++|++.-+++|+++.++|++|||||||+++|+|.++ ..|++ .+||.+.... .. ++.++
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~i--sy~G~~~~e~------------~~-~~~~a 192 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEI--TYNGHDLKEF------------VP-KKTVA 192 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCce--eECCCccccc------------cc-CceEE
Confidence 468999999999999999999999999999999999873 35778 8899887532 11 45689
Q ss_pred Eeccc
Q 030515 165 SVFVL 169 (176)
Q Consensus 165 ~V~Q~ 169 (176)
|+.|+
T Consensus 193 Y~~e~ 197 (1391)
T KOG0065|consen 193 YNSEQ 197 (1391)
T ss_pred ecccc
Confidence 99885
No 461
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=97.80 E-value=3e-05 Score=69.91 Aligned_cols=39 Identities=28% Similarity=0.238 Sum_probs=31.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhcc-cC---CCeEEEEECCeec
Q 030515 101 KGCVIWITGLSGSGKSTLACALSQAL-HW---RGKLTYILDGDNC 141 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLlr~L~gll-p~---~G~i~~~ldG~~v 141 (176)
+.-+++|.|++|||||||++.|.+++ +. .|.+ .+|+..+
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvI--SiDDfYL 253 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATL--SIDDFYL 253 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEE--EECCccC
Confidence 45799999999999999999999988 43 3444 7887665
No 462
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.80 E-value=1.6e-05 Score=70.03 Aligned_cols=27 Identities=44% Similarity=0.706 Sum_probs=25.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
+++.+++|+||+||||||++++|.+.+
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999999987
No 463
>PRK05922 type III secretion system ATPase; Validated
Probab=97.79 E-value=3.4e-05 Score=69.62 Aligned_cols=49 Identities=27% Similarity=0.279 Sum_probs=40.2
Q ss_pred cccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCe
Q 030515 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGD 139 (176)
Q Consensus 88 ~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~ 139 (176)
.++++|.+ +.+.+|+.++|+|+||+|||||+++|++.. ++.|.+ .+-|+
T Consensus 144 GIr~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~gvi--~liGe 193 (434)
T PRK05922 144 GIKAIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVI--ALIGE 193 (434)
T ss_pred Cceeecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCCCCceEE--EEeCC
Confidence 45667665 999999999999999999999999999987 566665 44443
No 464
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=97.79 E-value=1.9e-05 Score=77.14 Aligned_cols=33 Identities=33% Similarity=0.339 Sum_probs=30.7
Q ss_pred ceecceeEeeCCeEEEEEcCCCCcHHHHHHHHH
Q 030515 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALS 123 (176)
Q Consensus 91 ~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~ 123 (176)
.++++|+++++|++++|+|+||||||||++.+.
T Consensus 624 ~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l 656 (943)
T PRK00349 624 NLKNVDVEIPLGKFTCVTGVSGSGKSTLINETL 656 (943)
T ss_pred CcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHH
Confidence 489999999999999999999999999998763
No 465
>PRK06762 hypothetical protein; Provisional
Probab=97.78 E-value=2.3e-05 Score=60.59 Aligned_cols=39 Identities=41% Similarity=0.562 Sum_probs=30.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeeccC
Q 030515 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH 143 (176)
Q Consensus 102 Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~~ 143 (176)
+.+++|.|++||||||+++.|...++. +.+ .++++.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~-~~~--~i~~D~~r~ 40 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGR-GTL--LVSQDVVRR 40 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC-CeE--EecHHHHHH
Confidence 357899999999999999999887742 444 667766654
No 466
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.78 E-value=3.5e-05 Score=62.38 Aligned_cols=29 Identities=41% Similarity=0.508 Sum_probs=24.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccCCCeE
Q 030515 104 VIWITGLSGSGKSTLACALSQALHWRGKL 132 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gllp~~G~i 132 (176)
.++|+|++||||||+++.+.+.++..+.+
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~~ 31 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQL 31 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCcE
Confidence 57899999999999999999988433345
No 467
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.77 E-value=2.3e-05 Score=52.90 Aligned_cols=23 Identities=61% Similarity=0.715 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
+++|+|++||||||+++.|...+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999985
No 468
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.75 E-value=4.1e-05 Score=68.60 Aligned_cols=34 Identities=24% Similarity=0.146 Sum_probs=32.5
Q ss_pred cceeEeeCCeEEEEEcCCCCcHHHHHHHHHhccc
Q 030515 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (176)
Q Consensus 94 ~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp 127 (176)
|+++.+.+|+.++|+|++|||||||++.|.+.+.
T Consensus 160 d~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 160 DLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred eeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 8999999999999999999999999999999874
No 469
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.75 E-value=2.8e-05 Score=72.68 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=32.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCee
Q 030515 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~ 140 (176)
..-+++|.|+|||||||+++.|.+++|..|.+ .+||..
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~LaglLp~vgvI--smDdy~ 101 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVI--SMDNYN 101 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHHHHhhCCCcEEE--EEccee
Confidence 34689999999999999999999998877777 888764
No 470
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.75 E-value=1.4e-05 Score=62.41 Aligned_cols=31 Identities=32% Similarity=0.350 Sum_probs=24.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH---hcc-cCCCeE
Q 030515 102 GCVIWITGLSGSGKSTLACALS---QAL-HWRGKL 132 (176)
Q Consensus 102 Geiv~I~G~SGSGKSTLlr~L~---gll-p~~G~i 132 (176)
..+++|+|++||||||+++.|. |+. ++.|++
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~ 37 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDL 37 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHH
Confidence 4689999999999999999998 544 345543
No 471
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.74 E-value=1.7e-05 Score=61.98 Aligned_cols=29 Identities=45% Similarity=0.655 Sum_probs=24.1
Q ss_pred EcCCCCcHHHHHHHHHhcccCCCeEEEEECCeec
Q 030515 108 TGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (176)
Q Consensus 108 ~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v 141 (176)
||+|||||||++++|.+.+ |.+ .++|+.+
T Consensus 1 ~G~sGsGKSTla~~la~~l---~~~--~~~~d~~ 29 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQL---HAA--FLDGDFL 29 (163)
T ss_pred CCCCCCcHHHHHHHHHHHh---CCe--EEeCccC
Confidence 6999999999999999987 455 7777653
No 472
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.74 E-value=1.9e-05 Score=72.14 Aligned_cols=42 Identities=26% Similarity=0.368 Sum_probs=35.3
Q ss_pred cceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCe
Q 030515 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGK 131 (176)
Q Consensus 90 ~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~ 131 (176)
.++++.++.+.+|.+++|+||||+||||++..|++.+ ...|.
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~ 286 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA 286 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC
Confidence 3456677778899999999999999999999999987 56653
No 473
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=97.74 E-value=2.6e-05 Score=70.65 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=36.0
Q ss_pred CcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 87 ~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
..+.++|.+ |.+.+|+.++|+|+||+|||||+++|++..
T Consensus 154 TGi~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~ 192 (451)
T PRK05688 154 VGIRSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFT 192 (451)
T ss_pred cceeeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 346788999 999999999999999999999999999976
No 474
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.72 E-value=2.5e-05 Score=62.30 Aligned_cols=27 Identities=59% Similarity=0.738 Sum_probs=23.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccCCC
Q 030515 104 VIWITGLSGSGKSTLACALSQALHWRG 130 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gllp~~G 130 (176)
+++|.|+|||||||+++.|...+...|
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~ 27 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRG 27 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccC
Confidence 689999999999999999999885433
No 475
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=97.72 E-value=4.5e-05 Score=68.81 Aligned_cols=51 Identities=27% Similarity=0.195 Sum_probs=42.7
Q ss_pred cccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeec
Q 030515 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNC 141 (176)
Q Consensus 88 ~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v 141 (176)
...+++.. |.+.+|+.++|+|+||+|||||+++|++.. ++.|.+ .+.|+.-
T Consensus 143 GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI--~~iGerg 194 (432)
T PRK06793 143 GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVI--SLVGERG 194 (432)
T ss_pred CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEE--EeCCCCc
Confidence 35677774 999999999999999999999999999988 677776 6665543
No 476
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=97.72 E-value=2.9e-05 Score=63.74 Aligned_cols=29 Identities=45% Similarity=0.574 Sum_probs=24.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc----cCCCeE
Q 030515 104 VIWITGLSGSGKSTLACALSQAL----HWRGKL 132 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll----p~~G~i 132 (176)
+++|+||+||||||+++.|+..+ +++|.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~ 36 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAM 36 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeeCchH
Confidence 68999999999999999999644 356655
No 477
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.71 E-value=5.4e-05 Score=57.99 Aligned_cols=37 Identities=30% Similarity=0.375 Sum_probs=28.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhc----c-cCCC----eEEEEECCeec
Q 030515 103 CVIWITGLSGSGKSTLACALSQA----L-HWRG----KLTYILDGDNC 141 (176)
Q Consensus 103 eiv~I~G~SGSGKSTLlr~L~gl----l-p~~G----~i~~~ldG~~v 141 (176)
-.++|+|++|||||||++.+.+. . |+.| .+ .++|..+
T Consensus 15 ~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i--~~~~~~~ 60 (173)
T cd04155 15 PRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTV--QSDGFKL 60 (173)
T ss_pred cEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEE--EECCEEE
Confidence 34799999999999999999996 3 5667 44 5566554
No 478
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=97.71 E-value=2.7e-05 Score=80.10 Aligned_cols=31 Identities=32% Similarity=0.402 Sum_probs=29.7
Q ss_pred cceecceeEeeCCeEEEEEcCCCCcHHHHHH
Q 030515 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLAC 120 (176)
Q Consensus 90 ~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr 120 (176)
..|+++||++++||+++|+|+||||||||++
T Consensus 609 ~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~ 639 (1809)
T PRK00635 609 HNLKDLTISLPLGRLTVVTGVSGSGKSSLIN 639 (1809)
T ss_pred CCccceEEEEcCCcEEEEEcCCCCCHHHHHH
Confidence 3689999999999999999999999999999
No 479
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.71 E-value=3.4e-05 Score=62.70 Aligned_cols=40 Identities=18% Similarity=0.266 Sum_probs=28.6
Q ss_pred eeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECC
Q 030515 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138 (176)
Q Consensus 99 v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG 138 (176)
+++|+++.|.|++||||||++..+......+|+-+.++..
T Consensus 17 i~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 17 IPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 6899999999999999999998665322223543335543
No 480
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.70 E-value=5.2e-05 Score=60.55 Aligned_cols=30 Identities=40% Similarity=0.389 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhcccCCC
Q 030515 101 KGCVIWITGLSGSGKSTLACALSQALHWRG 130 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLlr~L~gllp~~G 130 (176)
...+++|+|+||||||||++.|.+.+...|
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~g 34 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCARG 34 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhcC
Confidence 345899999999999999999999984344
No 481
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=97.70 E-value=5.8e-05 Score=68.25 Aligned_cols=38 Identities=26% Similarity=0.239 Sum_probs=34.1
Q ss_pred cccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 88 ~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
...+++.+ +.+.+|+.++|+|+||+|||||+++|++..
T Consensus 149 Gi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~ 186 (444)
T PRK08972 149 GVRAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGT 186 (444)
T ss_pred cceeecce-EEEcCCCEEEEECCCCCChhHHHHHhccCC
Confidence 35667766 999999999999999999999999999976
No 482
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.69 E-value=4e-05 Score=65.84 Aligned_cols=42 Identities=26% Similarity=0.328 Sum_probs=33.2
Q ss_pred eEeeCCeEEEEEcCCCCcHHHHHHHHHhccc-CCCeEEEEECCee
Q 030515 97 LLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDN 140 (176)
Q Consensus 97 l~v~~Geiv~I~G~SGSGKSTLlr~L~gllp-~~G~i~~~ldG~~ 140 (176)
|.-+.+.+++|+|++|||||||++.+.+.+. ..+.. .+.|+.
T Consensus 99 ~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~--VI~gD~ 141 (290)
T PRK10463 99 FAARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCA--VIEGDQ 141 (290)
T ss_pred HHhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEE--EECCCc
Confidence 4557889999999999999999999999874 44444 555553
No 483
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=97.68 E-value=4.3e-05 Score=61.62 Aligned_cols=33 Identities=36% Similarity=0.424 Sum_probs=26.6
Q ss_pred ecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 93 ~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
+++++++.+| +.+|+|+|||||||++.+|.-.+
T Consensus 13 ~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l 45 (198)
T cd03276 13 RHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGL 45 (198)
T ss_pred eeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHh
Confidence 4566677776 67899999999999999997544
No 484
>PRK06696 uridine kinase; Validated
Probab=97.68 E-value=4.6e-05 Score=62.22 Aligned_cols=36 Identities=28% Similarity=0.418 Sum_probs=29.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEE
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI 135 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ 135 (176)
.+.-+++|.|+|||||||+++.|...++..|..++.
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~ 55 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIR 55 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 345699999999999999999999998766654334
No 485
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.68 E-value=4.4e-05 Score=62.32 Aligned_cols=29 Identities=31% Similarity=0.357 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh--cccCCCe
Q 030515 103 CVIWITGLSGSGKSTLACALSQ--ALHWRGK 131 (176)
Q Consensus 103 eiv~I~G~SGSGKSTLlr~L~g--llp~~G~ 131 (176)
.+++|+||||+||||++|.+.. .++..|.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~~G~ 60 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAHIGS 60 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHhCCC
Confidence 7899999999999999999983 2344443
No 486
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=97.67 E-value=5.2e-05 Score=60.14 Aligned_cols=35 Identities=49% Similarity=0.676 Sum_probs=28.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeecc
Q 030515 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (176)
Q Consensus 103 eiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~ 142 (176)
.++++||.|||||||+.++|...+- .- ++||+++.
T Consensus 13 ~~i~vmGvsGsGKSTigk~L~~~l~---~~--F~dgDd~H 47 (191)
T KOG3354|consen 13 YVIVVMGVSGSGKSTIGKALSEELG---LK--FIDGDDLH 47 (191)
T ss_pred eeEEEEecCCCChhhHHHHHHHHhC---Cc--ccccccCC
Confidence 3789999999999999999988763 22 77888775
No 487
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.67 E-value=3.8e-05 Score=60.22 Aligned_cols=27 Identities=41% Similarity=0.564 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhccc
Q 030515 101 KGCVIWITGLSGSGKSTLACALSQALH 127 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLlr~L~gllp 127 (176)
+|.+++|.|+|||||||+++.|...++
T Consensus 1 ~~~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 1 TGRIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 477999999999999999999988763
No 488
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.66 E-value=5.1e-05 Score=61.08 Aligned_cols=29 Identities=31% Similarity=0.476 Sum_probs=24.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccc--CCCeE
Q 030515 104 VIWITGLSGSGKSTLACALSQALH--WRGKL 132 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gllp--~~G~i 132 (176)
+++|.||+||||||++++|.+.++ ..|++
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i 33 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHI 33 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEE
Confidence 568999999999999999988884 34665
No 489
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.65 E-value=3.4e-05 Score=58.71 Aligned_cols=24 Identities=42% Similarity=0.549 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccc
Q 030515 104 VIWITGLSGSGKSTLACALSQALH 127 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gllp 127 (176)
+++|+||||||||||++.|.+.++
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 368999999999999999999864
No 490
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.64 E-value=6.7e-05 Score=66.58 Aligned_cols=42 Identities=26% Similarity=0.366 Sum_probs=35.3
Q ss_pred ccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCC
Q 030515 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRG 130 (176)
Q Consensus 89 ~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G 130 (176)
...+++.++.+.+|.+++|+||+|+||||++..|.... ...|
T Consensus 124 l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G 166 (374)
T PRK14722 124 LPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFG 166 (374)
T ss_pred chhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence 45567777889999999999999999999999999875 3444
No 491
>PRK06936 type III secretion system ATPase; Provisional
Probab=97.64 E-value=5.7e-05 Score=68.24 Aligned_cols=50 Identities=28% Similarity=0.223 Sum_probs=40.5
Q ss_pred cccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCee
Q 030515 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDN 140 (176)
Q Consensus 88 ~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~ 140 (176)
...+++++ +.+.+|+.++|+|+||+|||||+++|++.. ++ -++|.+-|+.
T Consensus 149 Gi~vid~l-~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~~~d--v~V~~liGER 199 (439)
T PRK06936 149 GVRVIDGL-LTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVD--VTVLALIGER 199 (439)
T ss_pred Ccceeeee-EEecCCCEEEEECCCCCChHHHHHHHhcCCCCC--EEEEEEEccC
Confidence 45689999 999999999999999999999999999987 43 3434444443
No 492
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.63 E-value=5.9e-05 Score=72.17 Aligned_cols=40 Identities=25% Similarity=0.356 Sum_probs=35.0
Q ss_pred ceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCC
Q 030515 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRG 130 (176)
Q Consensus 91 ~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G 130 (176)
++++.++.+.+|++++|+||||+||||++..|++.+ ...|
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G 214 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREG 214 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcC
Confidence 566778888889999999999999999999999988 5666
No 493
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.61 E-value=7.9e-05 Score=75.81 Aligned_cols=45 Identities=24% Similarity=0.153 Sum_probs=37.8
Q ss_pred ecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCee
Q 030515 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDN 140 (176)
Q Consensus 93 ~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~ 140 (176)
.+..|++.+| +++|+|+|||||||++.+|.+++ |..|.+ .+++..
T Consensus 19 ~~~~~~f~~~-~~~l~G~NGaGKSTll~ai~~~l~~~~~~~--~f~~~~ 64 (1486)
T PRK04863 19 FARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALIPDLTLL--HFRNTT 64 (1486)
T ss_pred cceEEEecCC-eEEEECCCCCCHHHHHHHHHccccCCCCeE--EECCcc
Confidence 3446777776 88999999999999999999998 788888 777654
No 494
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.61 E-value=6.1e-05 Score=57.16 Aligned_cols=35 Identities=46% Similarity=0.732 Sum_probs=28.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeeccC
Q 030515 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH 143 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~~ 143 (176)
+++|+|++||||||+++.|...+ |.. +++++.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~---~~~--~i~~D~~~~ 35 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL---GAP--FIDGDDLHP 35 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc---CCE--EEeCccccc
Confidence 47899999999999999998864 334 677777764
No 495
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.61 E-value=6.1e-05 Score=57.74 Aligned_cols=29 Identities=38% Similarity=0.492 Sum_probs=26.9
Q ss_pred eeCCeEEEEEcCCCCcHHHHHHHHHhccc
Q 030515 99 QQKGCVIWITGLSGSGKSTLACALSQALH 127 (176)
Q Consensus 99 v~~Geiv~I~G~SGSGKSTLlr~L~gllp 127 (176)
+++|.+++|.|+.||||||++|.+.+.+.
T Consensus 19 l~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 19 LDFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999873
No 496
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.60 E-value=2.9e-05 Score=75.79 Aligned_cols=28 Identities=43% Similarity=0.534 Sum_probs=27.2
Q ss_pred eecceeEeeCCeEEEEEcCCCCcHHHHH
Q 030515 92 RDRQQLLQQKGCVIWITGLSGSGKSTLA 119 (176)
Q Consensus 92 l~~isl~v~~Geiv~I~G~SGSGKSTLl 119 (176)
|++||++++++++++|+|+||||||||+
T Consensus 12 LKni~v~iP~~~l~v~TGvSGSGKSSLa 39 (924)
T TIGR00630 12 LKNIDVEIPRDKLVVITGLSGSGKSSLA 39 (924)
T ss_pred ccccccccCCCceEEEecCCCCCchhHH
Confidence 7899999999999999999999999997
No 497
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=97.60 E-value=3e-05 Score=75.87 Aligned_cols=28 Identities=43% Similarity=0.510 Sum_probs=27.2
Q ss_pred eecceeEeeCCeEEEEEcCCCCcHHHHH
Q 030515 92 RDRQQLLQQKGCVIWITGLSGSGKSTLA 119 (176)
Q Consensus 92 l~~isl~v~~Geiv~I~G~SGSGKSTLl 119 (176)
|+|||++|+++++++|+|+||||||||+
T Consensus 16 LKni~v~iP~~~l~v~TGvSGSGKSSLa 43 (943)
T PRK00349 16 LKNIDLDIPRDKLVVFTGLSGSGKSSLA 43 (943)
T ss_pred ccccccccCCCceEEEecCCCCCchhHH
Confidence 7899999999999999999999999997
No 498
>PRK07429 phosphoribulokinase; Provisional
Probab=97.57 E-value=9.4e-05 Score=64.46 Aligned_cols=37 Identities=24% Similarity=0.297 Sum_probs=28.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECC
Q 030515 101 KGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDG 138 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG 138 (176)
+.-+++|+|+|||||||+++.|.+++ +..+.+ +..|+
T Consensus 7 ~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~v-i~~Dd 44 (327)
T PRK07429 7 RPVLLGVAGDSGCGKTTFLRGLADLLGEELVTV-ICTDD 44 (327)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHhHhccCceEE-EEecc
Confidence 34589999999999999999999998 444433 24443
No 499
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.55 E-value=6.8e-05 Score=60.66 Aligned_cols=25 Identities=52% Similarity=0.659 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhc
Q 030515 101 KGCVIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLlr~L~gl 125 (176)
+|.+++|+||||+||||++++|...
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhh
Confidence 7899999999999999999998654
No 500
>PRK14527 adenylate kinase; Provisional
Probab=97.55 E-value=5.2e-05 Score=60.26 Aligned_cols=26 Identities=42% Similarity=0.488 Sum_probs=23.5
Q ss_pred eeCCeEEEEEcCCCCcHHHHHHHHHh
Q 030515 99 QQKGCVIWITGLSGSGKSTLACALSQ 124 (176)
Q Consensus 99 v~~Geiv~I~G~SGSGKSTLlr~L~g 124 (176)
..+|.+++|+|++||||||+++.|+.
T Consensus 3 ~~~~~~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 3 QTKNKVVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999999984
Done!