Query 030515
Match_columns 176
No_of_seqs 212 out of 1583
Neff 6.5
Searched_HMMs 29240
Date Tue Mar 26 00:19:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030515.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030515hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 99.8 7.8E-21 2.7E-25 165.6 10.2 95 68-174 22-117 (366)
2 3gfo_A Cobalt import ATP-bindi 99.8 5.1E-20 1.7E-24 154.5 10.3 86 70-171 7-94 (275)
3 3tif_A Uncharacterized ABC tra 99.8 3.8E-20 1.3E-24 151.5 9.1 89 71-170 2-92 (235)
4 2pcj_A ABC transporter, lipopr 99.8 5.7E-20 1.9E-24 149.3 9.9 86 70-170 4-91 (224)
5 3fvq_A Fe(3+) IONS import ATP- 99.8 3E-20 1E-24 161.4 6.1 88 70-174 4-92 (359)
6 1g6h_A High-affinity branched- 99.8 1.4E-19 4.6E-24 149.8 9.1 86 68-170 5-91 (257)
7 3rlf_A Maltose/maltodextrin im 99.8 5.8E-20 2E-24 160.8 7.2 85 69-174 2-87 (381)
8 4g1u_C Hemin import ATP-bindin 99.8 1.9E-19 6.6E-24 150.0 9.7 86 68-171 9-95 (266)
9 2olj_A Amino acid ABC transpor 99.8 1.3E-19 4.5E-24 151.0 8.4 85 70-170 24-109 (263)
10 1ji0_A ABC transporter; ATP bi 99.8 2.7E-19 9.2E-24 146.6 9.7 84 70-170 6-90 (240)
11 1b0u_A Histidine permease; ABC 99.8 2.1E-19 7.3E-24 149.2 8.8 93 70-170 6-102 (262)
12 1vpl_A ABC transporter, ATP-bi 99.8 2.7E-19 9.1E-24 148.5 8.7 85 67-170 12-97 (256)
13 2ff7_A Alpha-hemolysin translo 99.8 5.1E-19 1.7E-23 145.8 8.7 82 71-170 8-92 (247)
14 2yyz_A Sugar ABC transporter, 99.8 2.4E-19 8.2E-24 155.7 7.0 82 70-171 3-85 (359)
15 2it1_A 362AA long hypothetical 99.8 3.4E-19 1.2E-23 154.9 7.4 82 70-171 3-85 (362)
16 1z47_A CYSA, putative ABC-tran 99.8 3.8E-19 1.3E-23 154.3 7.6 85 67-171 11-97 (355)
17 2ihy_A ABC transporter, ATP-bi 99.8 4.5E-19 1.5E-23 148.8 7.7 86 69-170 20-106 (279)
18 1g29_1 MALK, maltose transport 99.8 3.3E-19 1.1E-23 155.4 7.0 89 69-171 2-91 (372)
19 1v43_A Sugar-binding transport 99.8 3.5E-19 1.2E-23 155.3 6.9 84 68-171 9-93 (372)
20 3nh6_A ATP-binding cassette SU 99.8 6.2E-19 2.1E-23 150.0 7.9 87 70-174 53-140 (306)
21 1oxx_K GLCV, glucose, ABC tran 99.8 2E-19 6.9E-24 155.7 4.7 88 69-171 2-92 (353)
22 3gd7_A Fusion complex of cysti 99.8 7.7E-19 2.6E-23 154.0 8.4 87 69-171 18-104 (390)
23 2ixe_A Antigen peptide transpo 99.8 7.4E-19 2.5E-23 146.7 7.9 83 70-170 16-102 (271)
24 1mv5_A LMRA, multidrug resista 99.8 4E-19 1.4E-23 145.8 6.2 82 71-170 2-85 (243)
25 2d2e_A SUFC protein; ABC-ATPas 99.8 1.2E-18 4E-23 143.6 8.1 84 70-170 3-89 (250)
26 3d31_A Sulfate/molybdate ABC t 99.8 7.3E-19 2.5E-23 152.0 6.4 80 71-171 2-82 (348)
27 2yz2_A Putative ABC transporte 99.7 2.4E-18 8.2E-23 143.1 9.1 82 70-170 2-87 (266)
28 1sgw_A Putative ABC transporte 99.7 2.4E-18 8.2E-23 139.4 8.3 79 68-170 8-87 (214)
29 2ghi_A Transport protein; mult 99.7 3.1E-18 1E-22 142.1 7.6 83 70-170 17-102 (260)
30 2zu0_C Probable ATP-dependent 99.7 4.4E-18 1.5E-22 141.6 8.4 85 69-170 19-106 (267)
31 2qi9_C Vitamin B12 import ATP- 99.7 1.6E-17 5.5E-22 137.3 8.3 69 90-171 14-83 (249)
32 2onk_A Molybdate/tungstate ABC 99.7 1.4E-17 4.7E-22 136.9 5.0 77 71-170 2-79 (240)
33 2cbz_A Multidrug resistance-as 99.7 5.8E-17 2E-21 132.6 7.4 61 70-138 3-66 (237)
34 3b5x_A Lipid A export ATP-bind 99.7 8.4E-17 2.9E-21 146.4 9.0 83 70-170 341-426 (582)
35 3b60_A Lipid A export ATP-bind 99.7 9.6E-17 3.3E-21 146.0 8.4 83 70-170 341-426 (582)
36 2pze_A Cystic fibrosis transme 99.7 1.4E-16 4.6E-21 129.7 8.1 63 70-138 6-69 (229)
37 3qf4_A ABC transporter, ATP-bi 99.7 7.3E-17 2.5E-21 147.2 6.6 88 70-174 341-429 (587)
38 4a82_A Cystic fibrosis transme 99.7 8.4E-17 2.9E-21 146.4 6.7 87 71-174 340-427 (578)
39 2pjz_A Hypothetical protein ST 99.7 6E-17 2.1E-21 134.9 5.1 79 71-171 2-85 (263)
40 3qf4_B Uncharacterized ABC tra 99.7 8.4E-17 2.9E-21 147.0 6.4 85 71-174 355-441 (598)
41 2yl4_A ATP-binding cassette SU 99.6 1.4E-16 4.8E-21 145.3 7.5 82 71-170 342-427 (595)
42 2nq2_C Hypothetical ABC transp 99.6 2.1E-16 7.3E-21 130.6 7.3 57 70-132 4-62 (253)
43 4f4c_A Multidrug resistance pr 99.6 1.1E-15 3.7E-20 150.6 8.0 88 71-174 1077-1165(1321)
44 3g5u_A MCG1178, multidrug resi 99.6 3.5E-15 1.2E-19 146.6 7.6 88 71-174 388-476 (1284)
45 4f4c_A Multidrug resistance pr 99.5 8.9E-15 3.1E-19 144.1 8.4 74 88-174 430-504 (1321)
46 2bbs_A Cystic fibrosis transme 99.5 5E-15 1.7E-19 124.9 5.7 59 70-138 40-99 (290)
47 3g5u_A MCG1178, multidrug resi 99.5 6.8E-15 2.3E-19 144.6 6.9 85 71-170 1031-1116(1284)
48 3uie_A Adenylyl-sulfate kinase 99.5 3.8E-15 1.3E-19 117.3 -0.6 84 80-163 3-86 (200)
49 1z6g_A Guanylate kinase; struc 99.4 2.1E-14 7E-19 115.4 0.7 70 87-170 8-77 (218)
50 1htw_A HI0065; nucleotide-bind 99.4 2.1E-14 7.2E-19 111.0 -0.2 57 84-142 15-71 (158)
51 2iw3_A Elongation factor 3A; a 99.3 8.3E-13 2.8E-17 126.9 6.3 63 68-138 669-734 (986)
52 3bk7_A ABC transporter ATP-bin 99.3 2.8E-12 9.7E-17 117.8 7.7 58 68-132 355-413 (607)
53 1tf7_A KAIC; homohexamer, hexa 99.3 6.5E-13 2.2E-17 119.3 3.1 73 86-171 22-98 (525)
54 1yqt_A RNAse L inhibitor; ATP- 99.3 3.7E-12 1.3E-16 115.3 7.6 59 67-132 284-343 (538)
55 2qm8_A GTPase/ATPase; G protei 99.2 1.6E-13 5.4E-18 117.5 -4.3 87 70-170 29-116 (337)
56 1yqt_A RNAse L inhibitor; ATP- 99.2 2.7E-12 9.1E-17 116.3 3.2 46 86-132 31-78 (538)
57 3b9q_A Chloroplast SRP recepto 99.2 7.9E-12 2.7E-16 105.7 5.6 72 91-171 89-164 (302)
58 2dpy_A FLII, flagellum-specifi 99.2 4.6E-12 1.6E-16 112.3 4.2 78 84-169 139-221 (438)
59 3bk7_A ABC transporter ATP-bin 99.2 5.2E-12 1.8E-16 116.0 4.2 51 81-132 96-148 (607)
60 3ozx_A RNAse L inhibitor; ATP 99.2 2.5E-11 8.7E-16 110.0 7.1 65 68-141 267-332 (538)
61 1znw_A Guanylate kinase, GMP k 99.2 4.4E-12 1.5E-16 100.3 1.6 64 90-170 10-73 (207)
62 2jeo_A Uridine-cytidine kinase 99.2 8.4E-12 2.9E-16 101.2 2.8 41 86-126 9-49 (245)
63 2og2_A Putative signal recogni 99.1 3.4E-11 1.1E-15 104.4 5.7 70 93-171 148-221 (359)
64 2yhs_A FTSY, cell division pro 99.1 3.2E-11 1.1E-15 108.7 5.6 71 92-170 283-356 (503)
65 3b85_A Phosphate starvation-in 99.1 1.1E-12 3.7E-17 105.5 -3.8 66 86-170 10-75 (208)
66 3tr0_A Guanylate kinase, GMP k 99.1 1.3E-11 4.6E-16 96.0 2.3 43 96-143 1-43 (205)
67 3euj_A Chromosome partition pr 99.1 2.3E-11 7.7E-16 109.3 3.4 52 89-143 17-69 (483)
68 3ux8_A Excinuclease ABC, A sub 99.1 2.5E-11 8.4E-16 112.0 3.4 45 88-132 30-96 (670)
69 2npi_A Protein CLP1; CLP1-PCF1 99.1 9.8E-12 3.3E-16 110.8 0.1 44 93-138 129-175 (460)
70 2gza_A Type IV secretion syste 99.1 1.3E-11 4.3E-16 106.5 -0.5 46 92-139 165-211 (361)
71 4aby_A DNA repair protein RECN 99.0 1.4E-10 4.8E-15 100.0 5.5 68 90-170 49-156 (415)
72 1rj9_A FTSY, signal recognitio 99.0 1.9E-10 6.6E-15 97.3 6.1 62 101-170 101-165 (304)
73 2v9p_A Replication protein E1; 99.0 2.6E-11 8.8E-16 103.1 0.7 44 86-132 111-154 (305)
74 3cr8_A Sulfate adenylyltranfer 99.0 3.2E-11 1.1E-15 109.8 0.8 72 98-170 365-438 (552)
75 2eyu_A Twitching motility prot 99.0 7.8E-11 2.7E-15 97.5 2.5 50 90-143 15-66 (261)
76 4gp7_A Metallophosphoesterase; 99.0 2.3E-10 8E-15 88.1 4.9 39 94-132 1-52 (171)
77 2obl_A ESCN; ATPase, hydrolase 99.0 8.5E-11 2.9E-15 101.2 2.2 61 71-140 46-108 (347)
78 3j16_B RLI1P; ribosome recycli 99.0 5.5E-10 1.9E-14 102.7 6.1 43 89-131 360-408 (608)
79 1u0l_A Probable GTPase ENGC; p 99.0 7.2E-11 2.5E-15 99.1 -0.1 62 97-171 164-230 (301)
80 2i3b_A HCR-ntpase, human cance 98.9 7.2E-11 2.5E-15 93.5 -0.6 54 102-170 1-54 (189)
81 1tq4_A IIGP1, interferon-induc 98.9 1E-10 3.5E-15 103.1 0.3 52 88-141 35-107 (413)
82 1s96_A Guanylate kinase, GMP k 98.9 1.6E-10 5.6E-15 93.3 1.4 58 97-170 11-71 (219)
83 1zp6_A Hypothetical protein AT 98.9 6.2E-10 2.1E-14 85.7 4.6 42 98-142 5-46 (191)
84 3j16_B RLI1P; ribosome recycli 98.9 3.9E-10 1.3E-14 103.7 3.9 61 71-132 70-134 (608)
85 2ehv_A Hypothetical protein PH 98.9 4.3E-10 1.5E-14 89.5 3.6 59 98-169 26-87 (251)
86 2pt7_A CAG-ALFA; ATPase, prote 98.9 1.2E-10 4.2E-15 99.3 0.4 48 91-140 160-208 (330)
87 3sop_A Neuronal-specific septi 98.9 4.2E-10 1.4E-14 93.5 2.9 52 104-170 4-56 (270)
88 3e70_C DPA, signal recognition 98.9 8.4E-10 2.9E-14 94.4 4.7 64 98-170 125-192 (328)
89 4eun_A Thermoresistant glucoki 98.9 6.8E-10 2.3E-14 87.0 3.2 41 97-142 24-64 (200)
90 1qhl_A Protein (cell division 98.9 4E-11 1.4E-15 97.9 -4.3 70 96-170 22-92 (227)
91 3aez_A Pantothenate kinase; tr 98.9 1.5E-09 5E-14 92.1 4.8 32 99-130 87-119 (312)
92 1sq5_A Pantothenate kinase; P- 98.9 2E-10 6.9E-15 96.6 -0.5 60 71-140 38-122 (308)
93 2qag_B Septin-6, protein NEDD5 98.9 2E-10 6.7E-15 101.8 -0.7 40 86-126 25-66 (427)
94 4e22_A Cytidylate kinase; P-lo 98.9 4.4E-10 1.5E-14 91.8 1.3 60 100-170 25-96 (252)
95 3lnc_A Guanylate kinase, GMP k 98.8 9.3E-10 3.2E-14 87.9 2.5 40 88-127 13-53 (231)
96 2iw3_A Elongation factor 3A; a 98.8 1.9E-09 6.6E-14 103.7 4.9 41 84-124 443-483 (986)
97 3ux8_A Excinuclease ABC, A sub 98.8 2.8E-09 9.5E-14 98.3 4.2 35 89-123 335-369 (670)
98 3szr_A Interferon-induced GTP- 98.8 4.5E-10 1.5E-14 102.9 -1.8 62 97-170 43-106 (608)
99 2yv5_A YJEQ protein; hydrolase 98.8 9.8E-10 3.4E-14 92.4 0.2 60 97-170 160-224 (302)
100 4a74_A DNA repair and recombin 98.7 4.7E-09 1.6E-13 82.4 4.0 29 98-126 21-49 (231)
101 2f1r_A Molybdopterin-guanine d 98.7 1.4E-09 4.7E-14 84.9 0.6 39 103-143 3-45 (171)
102 3kta_A Chromosome segregation 98.7 3.7E-09 1.3E-13 81.0 2.8 39 93-132 18-57 (182)
103 1cr0_A DNA primase/helicase; R 98.7 4E-09 1.4E-13 87.2 3.2 44 89-132 22-67 (296)
104 2w0m_A SSO2452; RECA, SSPF, un 98.7 4E-09 1.4E-13 82.6 2.5 45 89-133 9-55 (235)
105 3nwj_A ATSK2; P loop, shikimat 98.7 1.3E-09 4.4E-14 89.9 -0.3 51 70-126 17-72 (250)
106 2ewv_A Twitching motility prot 98.7 3E-09 1E-13 92.1 2.0 47 91-141 127-175 (372)
107 1lw7_A Transcriptional regulat 98.7 7.5E-10 2.6E-14 94.8 -2.2 43 92-136 158-207 (365)
108 2x8a_A Nuclear valosin-contain 98.7 1.1E-09 3.7E-14 90.9 -1.3 54 85-143 29-82 (274)
109 3c8u_A Fructokinase; YP_612366 98.7 4.3E-09 1.5E-13 83.0 2.2 41 99-141 19-63 (208)
110 3ozx_A RNAse L inhibitor; ATP 98.7 5.5E-09 1.9E-13 94.7 3.2 34 99-132 22-56 (538)
111 1m7g_A Adenylylsulfate kinase; 98.7 2.6E-09 8.9E-14 84.3 0.7 72 84-155 7-79 (211)
112 1p9r_A General secretion pathw 98.7 3.2E-09 1.1E-13 93.6 1.3 55 84-142 151-206 (418)
113 1t9h_A YLOQ, probable GTPase E 98.7 1.3E-09 4.4E-14 92.6 -1.5 61 97-170 168-232 (307)
114 2pez_A Bifunctional 3'-phospho 98.7 1.2E-08 4E-13 78.2 3.6 55 100-154 3-57 (179)
115 2qnr_A Septin-2, protein NEDD5 98.6 1.1E-08 3.7E-13 86.0 3.4 49 84-141 6-56 (301)
116 2oap_1 GSPE-2, type II secreti 98.6 5.3E-09 1.8E-13 94.3 1.5 51 88-140 246-297 (511)
117 3vaa_A Shikimate kinase, SK; s 98.6 1.3E-08 4.5E-13 79.5 3.2 39 88-126 11-49 (199)
118 1pui_A ENGB, probable GTP-bind 98.6 1E-08 3.5E-13 79.5 1.0 54 70-132 3-62 (210)
119 2j41_A Guanylate kinase; GMP, 98.6 2.5E-08 8.6E-13 77.2 3.2 34 97-130 1-35 (207)
120 2bdt_A BH3686; alpha-beta prot 98.6 2.2E-08 7.5E-13 77.2 2.6 38 102-143 2-39 (189)
121 2yvu_A Probable adenylyl-sulfa 98.5 3E-08 1E-12 76.4 2.9 60 97-157 8-68 (186)
122 1iy2_A ATP-dependent metallopr 98.5 3.6E-09 1.2E-13 86.9 -3.2 52 86-142 59-110 (278)
123 1ixz_A ATP-dependent metallopr 98.5 3.5E-09 1.2E-13 85.5 -3.3 52 86-142 35-86 (254)
124 1knq_A Gluconate kinase; ALFA/ 98.5 5.2E-08 1.8E-12 74.0 3.3 38 100-142 6-43 (175)
125 3asz_A Uridine kinase; cytidin 98.5 4.9E-08 1.7E-12 76.3 3.2 28 99-126 3-30 (211)
126 2r6f_A Excinuclease ABC subuni 98.5 4.8E-08 1.6E-12 93.8 3.7 34 90-123 638-671 (972)
127 1n0w_A DNA repair protein RAD5 98.5 8.7E-08 3E-12 75.8 4.3 41 98-140 20-68 (243)
128 1x6v_B Bifunctional 3'-phospho 98.5 4.1E-08 1.4E-12 90.6 2.3 85 78-162 24-112 (630)
129 1lvg_A Guanylate kinase, GMP k 98.5 5.2E-08 1.8E-12 76.6 2.5 28 100-127 2-29 (198)
130 1cke_A CK, MSSA, protein (cyti 98.4 2.6E-08 9.1E-13 78.4 0.4 57 102-169 5-73 (227)
131 1zu4_A FTSY; GTPase, signal re 98.4 1.2E-07 4E-12 80.7 4.3 47 93-141 96-143 (320)
132 3a00_A Guanylate kinase, GMP k 98.4 7.3E-08 2.5E-12 74.6 2.7 26 102-127 1-26 (186)
133 2vf7_A UVRA2, excinuclease ABC 98.4 4.7E-08 1.6E-12 92.9 1.8 36 91-126 512-548 (842)
134 2rcn_A Probable GTPase ENGC; Y 98.4 1.5E-07 5.3E-12 81.4 4.8 63 91-170 205-270 (358)
135 2qag_C Septin-7; cell cycle, c 98.4 1.5E-07 5.2E-12 82.9 4.5 48 71-130 12-60 (418)
136 1kgd_A CASK, peripheral plasma 98.4 1.3E-07 4.5E-12 72.9 3.5 28 100-127 3-30 (180)
137 1e69_A Chromosome segregation 98.4 2.5E-07 8.7E-12 77.8 5.5 32 94-126 17-48 (322)
138 3jvv_A Twitching mobility prot 98.4 9.9E-08 3.4E-12 82.3 2.2 35 98-132 119-155 (356)
139 2o8b_B DNA mismatch repair pro 98.4 1.9E-07 6.7E-12 90.2 4.3 39 87-126 767-812 (1022)
140 1rz3_A Hypothetical protein rb 98.4 1.7E-07 5.9E-12 73.4 3.2 35 98-132 18-53 (201)
141 3ec2_A DNA replication protein 98.3 1E-07 3.4E-12 73.0 1.6 42 96-137 32-74 (180)
142 2kjq_A DNAA-related protein; s 98.3 1.4E-07 4.9E-12 71.4 2.2 41 101-141 35-75 (149)
143 1pzn_A RAD51, DNA repair and r 98.3 8.9E-08 3.1E-12 82.1 1.1 51 90-141 118-176 (349)
144 1in4_A RUVB, holliday junction 98.3 2.1E-08 7.1E-13 84.9 -2.9 41 86-126 28-75 (334)
145 2vp4_A Deoxynucleoside kinase; 98.3 1.5E-07 5.2E-12 75.4 2.1 40 98-142 16-55 (230)
146 3thx_B DNA mismatch repair pro 98.3 2E-07 6.8E-12 89.3 2.8 38 88-125 659-696 (918)
147 1ewq_A DNA mismatch repair pro 98.3 2.6E-07 8.9E-12 87.0 3.4 43 87-132 564-608 (765)
148 1wb9_A DNA mismatch repair pro 98.3 3.3E-07 1.1E-11 86.7 4.0 39 87-126 593-631 (800)
149 2bbw_A Adenylate kinase 4, AK4 98.3 1.4E-07 5E-12 75.9 1.4 36 101-138 26-65 (246)
150 1m8p_A Sulfate adenylyltransfe 98.3 6.2E-08 2.1E-12 88.4 -1.2 66 99-164 393-459 (573)
151 3tau_A Guanylate kinase, GMP k 98.3 4.3E-07 1.5E-11 71.6 3.8 28 100-127 6-33 (208)
152 3lda_A DNA repair protein RAD5 98.3 4.3E-07 1.5E-11 79.5 4.1 62 98-168 174-241 (400)
153 3tqc_A Pantothenate kinase; bi 98.3 1.2E-07 4.1E-12 80.9 0.4 49 84-132 68-125 (321)
154 1ls1_A Signal recognition part 98.3 4.5E-07 1.5E-11 76.0 3.6 46 93-142 91-137 (295)
155 1vma_A Cell division protein F 98.2 5.8E-07 2E-11 76.0 3.7 46 94-141 96-142 (306)
156 1nij_A Hypothetical protein YJ 98.2 3.6E-07 1.2E-11 77.1 2.4 39 103-143 5-52 (318)
157 3thx_A DNA mismatch repair pro 98.2 6.6E-07 2.2E-11 85.9 4.1 35 88-122 648-682 (934)
158 1ye8_A Protein THEP1, hypothet 98.2 6.3E-07 2.1E-11 69.8 3.0 24 104-127 2-25 (178)
159 1kag_A SKI, shikimate kinase I 98.2 5.9E-07 2E-11 67.7 2.7 36 101-141 3-38 (173)
160 2ygr_A Uvrabc system protein A 98.2 5.5E-07 1.9E-11 86.8 2.8 32 91-122 657-688 (993)
161 1svm_A Large T antigen; AAA+ f 98.2 4.2E-07 1.4E-11 79.1 1.7 42 89-132 156-197 (377)
162 2dr3_A UPF0273 protein PH0284; 98.1 5.9E-07 2E-11 70.9 1.8 49 90-139 10-60 (247)
163 3pih_A Uvrabc system protein A 98.1 1.5E-06 5.3E-11 83.2 4.9 31 89-119 597-627 (916)
164 3m6a_A ATP-dependent protease 98.1 2.6E-07 9E-12 83.4 -0.8 50 86-138 93-143 (543)
165 3ney_A 55 kDa erythrocyte memb 98.1 1.4E-06 4.7E-11 69.6 3.5 32 96-127 13-44 (197)
166 2qt1_A Nicotinamide riboside k 98.1 1.6E-06 5.5E-11 67.6 3.4 30 98-127 17-46 (207)
167 3qf7_A RAD50; ABC-ATPase, ATPa 98.1 1.9E-06 6.3E-11 74.2 3.9 36 90-126 12-47 (365)
168 2cvh_A DNA repair and recombin 98.1 1.1E-06 3.6E-11 68.4 2.1 48 90-140 7-55 (220)
169 2o5v_A DNA replication and rep 98.1 1.9E-06 6.3E-11 74.5 3.9 34 90-124 15-48 (359)
170 3k1j_A LON protease, ATP-depen 98.1 8.4E-07 2.9E-11 80.8 1.4 54 86-141 44-99 (604)
171 2p67_A LAO/AO transport system 98.1 7.6E-07 2.6E-11 75.7 0.9 47 86-132 40-87 (341)
172 1udx_A The GTP-binding protein 98.1 1.3E-06 4.5E-11 76.9 2.4 35 92-126 147-181 (416)
173 1tf7_A KAIC; homohexamer, hexa 98.0 1.9E-06 6.5E-11 77.2 3.4 36 96-131 275-310 (525)
174 1oix_A RAS-related protein RAB 98.0 3.1E-06 1.1E-10 65.1 4.1 36 104-141 31-78 (191)
175 2p5t_B PEZT; postsegregational 98.0 3.2E-06 1.1E-10 68.6 3.9 44 98-144 28-71 (253)
176 4ad8_A DNA repair protein RECN 98.0 4.4E-06 1.5E-10 74.6 5.1 35 91-126 50-84 (517)
177 4eaq_A DTMP kinase, thymidylat 98.0 3.9E-06 1.3E-10 67.6 3.6 42 91-132 12-56 (229)
178 1nlf_A Regulatory protein REPA 98.0 6E-06 2.1E-10 67.6 4.5 29 99-127 27-55 (279)
179 1y63_A LMAJ004144AAA protein; 97.9 4.9E-06 1.7E-10 64.1 3.4 32 94-125 2-33 (184)
180 1sxj_E Activator 1 40 kDa subu 97.9 4.5E-06 1.5E-10 69.7 3.0 35 105-141 39-75 (354)
181 2dhr_A FTSH; AAA+ protein, hex 97.9 1.4E-06 4.8E-11 78.3 -0.2 52 87-143 51-102 (499)
182 3t61_A Gluconokinase; PSI-biol 97.9 3.5E-06 1.2E-10 65.4 2.1 35 102-141 18-52 (202)
183 1qhx_A CPT, protein (chloramph 97.9 5.9E-06 2E-10 62.4 3.3 26 102-127 3-28 (178)
184 2qor_A Guanylate kinase; phosp 97.9 4.9E-06 1.7E-10 65.0 2.9 30 98-127 8-37 (204)
185 1w1w_A Structural maintenance 97.9 6.2E-06 2.1E-10 71.9 3.7 32 97-128 21-53 (430)
186 2px0_A Flagellar biosynthesis 97.9 7E-06 2.4E-10 68.8 3.6 33 100-132 103-137 (296)
187 2gks_A Bifunctional SAT/APS ki 97.9 4.6E-06 1.6E-10 75.6 2.4 59 100-158 370-428 (546)
188 2f9l_A RAB11B, member RAS onco 97.8 1E-05 3.5E-10 62.2 3.8 36 104-141 7-54 (199)
189 1ni3_A YCHF GTPase, YCHF GTP-b 97.8 9E-06 3.1E-10 71.1 3.8 39 98-138 16-67 (392)
190 2ffh_A Protein (FFH); SRP54, s 97.8 1E-05 3.5E-10 71.4 3.8 45 93-141 91-136 (425)
191 1f2t_A RAD50 ABC-ATPase; DNA d 97.8 1.8E-05 6E-10 59.7 3.8 30 96-126 18-47 (149)
192 1odf_A YGR205W, hypothetical 3 97.7 1.4E-05 4.7E-10 66.9 3.4 29 99-127 28-56 (290)
193 1jjv_A Dephospho-COA kinase; P 97.7 1.5E-05 5.2E-10 61.9 3.3 32 104-141 4-35 (206)
194 2www_A Methylmalonic aciduria 97.7 1.7E-05 5.7E-10 67.8 3.6 34 100-133 72-106 (349)
195 3cm0_A Adenylate kinase; ATP-b 97.7 1.5E-05 5.3E-10 60.5 3.0 27 100-126 2-28 (186)
196 3kb2_A SPBC2 prophage-derived 97.7 1.5E-05 5.3E-10 59.3 2.9 23 104-126 3-25 (173)
197 2vf7_A UVRA2, excinuclease ABC 97.7 1.7E-05 5.9E-10 75.4 3.8 28 92-119 26-53 (842)
198 1sxj_C Activator 1 40 kDa subu 97.7 7.2E-06 2.5E-10 68.8 0.7 45 86-130 28-75 (340)
199 3a4m_A L-seryl-tRNA(SEC) kinas 97.7 2.1E-05 7.3E-10 64.0 3.3 45 100-144 2-46 (260)
200 2rhm_A Putative kinase; P-loop 97.7 2.2E-05 7.5E-10 59.8 3.1 27 100-126 3-29 (193)
201 2if2_A Dephospho-COA kinase; a 97.7 2.4E-05 8.1E-10 60.5 3.2 21 104-124 3-23 (204)
202 1g8f_A Sulfate adenylyltransfe 97.7 2E-05 6.9E-10 71.1 3.2 42 99-140 392-435 (511)
203 3hr8_A Protein RECA; alpha and 97.7 2.5E-05 8.4E-10 67.5 3.6 41 99-140 58-99 (356)
204 2ygr_A Uvrabc system protein A 97.6 2.3E-05 8E-10 75.5 3.7 28 92-119 36-63 (993)
205 1j8m_F SRP54, signal recogniti 97.6 1.6E-05 5.5E-10 66.7 2.2 39 93-132 89-129 (297)
206 2r6f_A Excinuclease ABC subuni 97.6 2.5E-05 8.5E-10 75.2 3.7 28 92-119 34-61 (972)
207 1uf9_A TT1252 protein; P-loop, 97.6 2E-05 6.8E-10 60.5 2.3 35 101-141 7-41 (203)
208 1kht_A Adenylate kinase; phosp 97.6 3E-05 1E-09 58.7 3.1 29 102-130 3-31 (192)
209 1gvn_B Zeta; postsegregational 97.6 2.9E-05 1E-09 64.5 3.3 42 99-143 30-71 (287)
210 3pih_A Uvrabc system protein A 97.6 2.1E-05 7.2E-10 75.4 2.7 28 92-119 14-41 (916)
211 2plr_A DTMP kinase, probable t 97.6 4.1E-05 1.4E-09 58.9 3.8 32 101-132 3-34 (213)
212 3lw7_A Adenylate kinase relate 97.6 3.9E-05 1.3E-09 56.7 3.2 19 104-122 3-21 (179)
213 3trf_A Shikimate kinase, SK; a 97.6 3.7E-05 1.3E-09 58.4 3.1 26 101-126 4-29 (185)
214 1nn5_A Similar to deoxythymidy 97.5 3.5E-05 1.2E-09 59.6 2.8 32 99-130 6-37 (215)
215 2ga8_A Hypothetical 39.9 kDa p 97.5 1.3E-05 4.6E-10 69.4 0.3 37 90-126 10-48 (359)
216 1ly1_A Polynucleotide kinase; 97.5 5.7E-05 2E-09 56.6 3.6 35 103-141 3-37 (181)
217 1nks_A Adenylate kinase; therm 97.5 5.7E-05 2E-09 57.1 3.7 34 104-137 3-36 (194)
218 1via_A Shikimate kinase; struc 97.5 3.5E-05 1.2E-09 58.3 2.4 23 104-126 6-28 (175)
219 3iij_A Coilin-interacting nucl 97.5 2.8E-05 9.7E-10 59.0 1.9 27 100-126 9-35 (180)
220 2wwf_A Thymidilate kinase, put 97.5 5E-05 1.7E-09 58.7 3.1 28 100-127 8-35 (212)
221 2v54_A DTMP kinase, thymidylat 97.5 6.9E-05 2.4E-09 57.5 3.7 26 101-126 3-28 (204)
222 1q3t_A Cytidylate kinase; nucl 97.5 5.4E-05 1.8E-09 60.4 3.2 28 98-125 12-39 (236)
223 1vht_A Dephospho-COA kinase; s 97.5 7.4E-05 2.5E-09 58.5 3.7 24 101-124 3-26 (218)
224 2ze6_A Isopentenyl transferase 97.5 6.1E-05 2.1E-09 61.3 3.2 24 103-126 2-25 (253)
225 2c95_A Adenylate kinase 1; tra 97.4 6.5E-05 2.2E-09 57.2 3.1 27 100-126 7-33 (196)
226 2vli_A Antibiotic resistance p 97.4 4.5E-05 1.6E-09 57.6 2.2 26 101-126 4-29 (183)
227 3t34_A Dynamin-related protein 97.4 7.7E-05 2.6E-09 63.3 3.8 34 89-125 24-57 (360)
228 3qks_A DNA double-strand break 97.4 8.7E-05 3E-09 58.5 3.8 30 96-126 18-47 (203)
229 1np6_A Molybdopterin-guanine d 97.4 5.8E-05 2E-09 58.6 2.7 25 103-127 7-31 (174)
230 1tev_A UMP-CMP kinase; ploop, 97.4 7.6E-05 2.6E-09 56.5 3.3 26 101-126 2-27 (196)
231 2jaq_A Deoxyguanosine kinase; 97.4 6.9E-05 2.3E-09 57.3 3.0 23 104-126 2-24 (205)
232 1gtv_A TMK, thymidylate kinase 97.4 3.5E-05 1.2E-09 59.7 1.3 27 104-130 2-28 (214)
233 2pbr_A DTMP kinase, thymidylat 97.4 7E-05 2.4E-09 56.8 2.9 29 104-132 2-30 (195)
234 2dy1_A Elongation factor G; tr 97.4 5.1E-05 1.7E-09 70.1 2.5 61 96-169 3-66 (665)
235 3r20_A Cytidylate kinase; stru 97.4 7.1E-05 2.4E-09 61.0 3.0 26 101-126 8-33 (233)
236 2gj8_A MNME, tRNA modification 97.4 9.6E-05 3.3E-09 55.7 3.5 27 100-126 2-28 (172)
237 3qkt_A DNA double-strand break 97.4 9.9E-05 3.4E-09 62.4 3.8 29 97-126 19-47 (339)
238 2z0h_A DTMP kinase, thymidylat 97.4 7.3E-05 2.5E-09 57.0 2.7 29 104-132 2-30 (197)
239 1lv7_A FTSH; alpha/beta domain 97.4 7.3E-05 2.5E-09 60.0 2.7 45 93-142 38-82 (257)
240 2bwj_A Adenylate kinase 5; pho 97.4 3.7E-05 1.2E-09 58.8 0.8 28 99-126 9-36 (199)
241 3ake_A Cytidylate kinase; CMP 97.4 8.7E-05 3E-09 57.0 2.9 23 104-126 4-26 (208)
242 3ice_A Transcription terminati 97.4 7.7E-05 2.6E-09 65.7 2.8 33 94-126 166-198 (422)
243 1zuh_A Shikimate kinase; alpha 97.3 0.0001 3.5E-09 55.2 3.0 25 102-126 7-31 (168)
244 2zr9_A Protein RECA, recombina 97.3 0.00011 3.9E-09 62.8 3.4 41 98-139 57-98 (349)
245 1f6b_A SAR1; gtpases, N-termin 97.3 7.3E-05 2.5E-09 57.6 2.0 34 90-124 14-47 (198)
246 2iyv_A Shikimate kinase, SK; t 97.3 8.2E-05 2.8E-09 56.5 2.3 24 103-126 3-26 (184)
247 1ex7_A Guanylate kinase; subst 97.3 0.00011 3.9E-09 57.7 3.0 23 105-127 4-26 (186)
248 1m2o_B GTP-binding protein SAR 97.3 0.00013 4.5E-09 55.7 3.3 34 90-124 12-45 (190)
249 1e6c_A Shikimate kinase; phosp 97.3 9.7E-05 3.3E-09 55.2 2.4 23 104-126 4-26 (173)
250 4fcw_A Chaperone protein CLPB; 97.3 5E-05 1.7E-09 62.1 0.7 35 103-138 48-83 (311)
251 1aky_A Adenylate kinase; ATP:A 97.3 0.00014 4.8E-09 57.0 3.2 26 101-126 3-28 (220)
252 2pt5_A Shikimate kinase, SK; a 97.3 0.00014 4.9E-09 54.1 3.0 23 104-126 2-24 (168)
253 1ega_A Protein (GTP-binding pr 97.3 0.00012 4E-09 61.1 2.7 27 100-126 6-32 (301)
254 1qf9_A UMP/CMP kinase, protein 97.3 0.00015 5E-09 54.8 3.0 25 102-126 6-30 (194)
255 2cdn_A Adenylate kinase; phosp 97.2 0.00016 5.4E-09 55.8 3.3 27 100-126 18-44 (201)
256 1xjc_A MOBB protein homolog; s 97.2 0.00013 4.6E-09 56.6 2.7 28 103-130 5-32 (169)
257 1mky_A Probable GTP-binding pr 97.2 0.00024 8.2E-09 62.0 4.6 37 103-141 181-230 (439)
258 2r6a_A DNAB helicase, replicat 97.2 9.1E-05 3.1E-09 65.0 1.9 43 89-131 190-233 (454)
259 1ukz_A Uridylate kinase; trans 97.2 0.00018 6.2E-09 55.4 3.3 27 100-126 13-39 (203)
260 1zd8_A GTP:AMP phosphotransfer 97.2 0.00018 6.1E-09 56.8 3.2 27 100-126 5-31 (227)
261 3fb4_A Adenylate kinase; psych 97.2 0.00017 5.7E-09 56.2 2.9 23 104-126 2-24 (216)
262 1uj2_A Uridine-cytidine kinase 97.2 0.00022 7.6E-09 57.4 3.5 27 100-126 20-46 (252)
263 1zak_A Adenylate kinase; ATP:A 97.2 0.00015 5.3E-09 56.9 2.5 26 101-126 4-29 (222)
264 1a7j_A Phosphoribulokinase; tr 97.2 5.3E-05 1.8E-09 63.1 -0.3 42 101-142 4-45 (290)
265 1ypw_A Transitional endoplasmi 97.2 0.00016 5.4E-09 68.2 2.8 43 97-142 233-275 (806)
266 3dl0_A Adenylate kinase; phosp 97.2 0.00022 7.4E-09 55.6 3.1 23 104-126 2-24 (216)
267 3bos_A Putative DNA replicatio 97.2 0.00019 6.5E-09 55.7 2.8 37 101-137 51-87 (242)
268 2wji_A Ferrous iron transport 97.1 0.00024 8.4E-09 52.8 3.2 23 104-126 5-27 (165)
269 3cf0_A Transitional endoplasmi 97.1 0.00019 6.5E-09 59.4 2.5 40 98-140 45-84 (301)
270 3tlx_A Adenylate kinase 2; str 97.1 0.00031 1.1E-08 56.5 3.6 27 100-126 27-53 (243)
271 1ko7_A HPR kinase/phosphatase; 97.1 0.00063 2.1E-08 57.8 5.6 38 86-124 129-166 (314)
272 3zvl_A Bifunctional polynucleo 97.1 0.00027 9.2E-09 61.6 3.2 30 97-126 253-282 (416)
273 2zej_A Dardarin, leucine-rich 97.1 0.00028 9.5E-09 53.4 2.8 22 104-125 4-25 (184)
274 1v5w_A DMC1, meiotic recombina 97.0 0.00056 1.9E-08 58.0 4.9 43 98-140 118-166 (343)
275 4edh_A DTMP kinase, thymidylat 97.0 0.00049 1.7E-08 54.8 4.1 32 100-131 4-35 (213)
276 2z43_A DNA repair and recombin 97.0 0.00061 2.1E-08 57.1 4.8 29 98-126 103-131 (324)
277 2wjg_A FEOB, ferrous iron tran 97.0 0.0004 1.4E-08 52.1 3.3 22 104-125 9-30 (188)
278 2qtf_A Protein HFLX, GTP-bindi 97.0 0.00046 1.6E-08 59.3 4.1 36 104-141 181-228 (364)
279 3auy_A DNA double-strand break 97.0 0.00051 1.8E-08 58.6 4.3 30 94-124 18-47 (371)
280 2w58_A DNAI, primosome compone 97.0 0.00045 1.5E-08 53.1 3.5 28 103-130 55-82 (202)
281 1ltq_A Polynucleotide kinase; 97.0 0.00044 1.5E-08 56.5 3.6 34 103-140 3-36 (301)
282 3kl4_A SRP54, signal recogniti 97.0 0.0004 1.4E-08 61.4 3.5 32 101-132 96-128 (433)
283 2grj_A Dephospho-COA kinase; T 97.0 0.00042 1.4E-08 54.4 3.3 26 101-126 11-36 (192)
284 3be4_A Adenylate kinase; malar 97.0 0.00036 1.2E-08 54.8 2.8 26 101-126 4-29 (217)
285 3umf_A Adenylate kinase; rossm 97.0 0.00042 1.4E-08 55.7 3.2 29 98-126 25-53 (217)
286 2qag_A Septin-2, protein NEDD5 97.0 0.00018 6.1E-09 61.6 1.0 35 86-126 27-61 (361)
287 2f6r_A COA synthase, bifunctio 96.9 0.00045 1.5E-08 57.0 3.4 24 101-124 74-97 (281)
288 2xb4_A Adenylate kinase; ATP-b 96.9 0.00049 1.7E-08 54.4 3.0 23 104-126 2-24 (223)
289 1njg_A DNA polymerase III subu 96.9 0.00018 6.2E-09 55.1 0.3 23 104-126 47-69 (250)
290 1jbk_A CLPB protein; beta barr 96.9 0.00059 2E-08 50.5 3.2 26 101-126 42-67 (195)
291 1fnn_A CDC6P, cell division co 96.9 0.00075 2.6E-08 56.3 4.2 38 100-137 40-80 (389)
292 1ak2_A Adenylate kinase isoenz 96.9 0.00056 1.9E-08 54.3 3.2 27 100-126 14-40 (233)
293 2h92_A Cytidylate kinase; ross 96.9 0.00047 1.6E-08 53.6 2.7 25 102-126 3-27 (219)
294 1e4v_A Adenylate kinase; trans 96.9 0.0005 1.7E-08 53.7 2.8 23 104-126 2-24 (214)
295 2qby_A CDC6 homolog 1, cell di 96.9 0.0004 1.4E-08 57.5 2.4 39 100-138 43-84 (386)
296 2ohf_A Protein OLA1, GTP-bindi 96.9 0.00049 1.7E-08 60.2 3.0 27 99-125 19-45 (396)
297 3lv8_A DTMP kinase, thymidylat 96.8 0.00051 1.7E-08 55.8 2.8 31 100-130 25-55 (236)
298 2ius_A DNA translocase FTSK; n 96.8 0.00077 2.6E-08 60.8 4.1 46 94-139 159-208 (512)
299 4tmk_A Protein (thymidylate ki 96.8 0.00059 2E-08 54.5 2.8 31 101-131 2-32 (213)
300 2p65_A Hypothetical protein PF 96.8 0.00097 3.3E-08 49.4 3.8 25 102-126 43-67 (187)
301 3b9p_A CG5977-PA, isoform A; A 96.8 0.00079 2.7E-08 54.8 3.4 26 101-126 53-78 (297)
302 3lxx_A GTPase IMAP family memb 96.8 0.00087 3E-08 53.1 3.6 23 104-126 31-53 (239)
303 2ce7_A Cell division protein F 96.8 0.00046 1.6E-08 61.6 2.2 35 90-126 39-73 (476)
304 3a8t_A Adenylate isopentenyltr 96.8 0.00089 3.1E-08 57.5 3.8 28 100-127 38-65 (339)
305 4ag6_A VIRB4 ATPase, type IV s 96.7 0.00074 2.5E-08 57.7 3.2 32 101-132 34-66 (392)
306 3ld9_A DTMP kinase, thymidylat 96.7 0.00087 3E-08 54.1 3.3 33 98-130 17-50 (223)
307 2ocp_A DGK, deoxyguanosine kin 96.7 0.00096 3.3E-08 53.1 3.5 27 101-127 1-27 (241)
308 1l8q_A Chromosomal replication 96.7 0.0006 2E-08 56.5 2.3 36 102-137 37-72 (324)
309 1u94_A RECA protein, recombina 96.7 0.001 3.6E-08 57.0 3.5 41 99-139 60-100 (356)
310 2ged_A SR-beta, signal recogni 96.6 0.001 3.6E-08 50.0 3.1 24 103-126 49-72 (193)
311 3d3q_A TRNA delta(2)-isopenten 96.6 0.00093 3.2E-08 57.3 3.1 25 103-127 8-32 (340)
312 3v9p_A DTMP kinase, thymidylat 96.6 0.00072 2.5E-08 54.6 2.2 31 99-129 22-52 (227)
313 1z2a_A RAS-related protein RAB 96.6 0.0011 3.8E-08 48.2 3.1 23 104-126 7-29 (168)
314 3h4m_A Proteasome-activating n 96.6 0.0011 3.7E-08 53.5 3.2 27 100-126 49-75 (285)
315 1p5z_B DCK, deoxycytidine kina 96.6 0.0008 2.7E-08 54.3 2.3 28 99-126 21-48 (263)
316 1kao_A RAP2A; GTP-binding prot 96.6 0.0012 4.2E-08 47.7 3.1 22 104-125 5-26 (167)
317 2ce2_X GTPase HRAS; signaling 96.6 0.0011 3.9E-08 47.7 2.9 23 104-126 5-27 (166)
318 2nzj_A GTP-binding protein REM 96.6 0.0012 4E-08 48.5 3.0 23 104-126 6-28 (175)
319 2dyk_A GTP-binding protein; GT 96.6 0.0012 4.3E-08 47.7 3.1 23 104-126 3-25 (161)
320 2qmh_A HPR kinase/phosphorylas 96.6 0.0018 6.2E-08 51.9 4.3 36 90-126 23-58 (205)
321 3n70_A Transport activator; si 96.6 0.0015 5.3E-08 48.1 3.6 28 101-128 23-50 (145)
322 1u8z_A RAS-related protein RAL 96.6 0.0013 4.3E-08 47.7 3.1 22 104-125 6-27 (168)
323 3exa_A TRNA delta(2)-isopenten 96.6 0.0015 5.1E-08 55.8 3.9 26 102-127 3-28 (322)
324 3crm_A TRNA delta(2)-isopenten 96.6 0.0013 4.4E-08 56.0 3.5 25 103-127 6-30 (323)
325 3bh0_A DNAB-like replicative h 96.6 0.0018 6.2E-08 54.1 4.3 48 89-136 55-102 (315)
326 2erx_A GTP-binding protein DI- 96.6 0.0013 4.6E-08 47.8 3.1 22 104-125 5-26 (172)
327 3tqf_A HPR(Ser) kinase; transf 96.6 0.003 1E-07 49.8 5.2 26 99-124 13-38 (181)
328 2lkc_A Translation initiation 96.6 0.0017 5.7E-08 47.9 3.6 25 101-125 7-31 (178)
329 2qz4_A Paraplegin; AAA+, SPG7, 96.6 0.0014 4.9E-08 51.8 3.5 27 100-126 37-63 (262)
330 3sr0_A Adenylate kinase; phosp 96.6 0.0013 4.6E-08 52.1 3.3 23 104-126 2-24 (206)
331 1ek0_A Protein (GTP-binding pr 96.5 0.0014 4.6E-08 47.7 3.1 22 105-126 6-27 (170)
332 3q72_A GTP-binding protein RAD 96.5 0.0011 3.7E-08 48.4 2.4 22 105-126 5-26 (166)
333 1z0j_A RAB-22, RAS-related pro 96.5 0.0014 4.9E-08 47.7 3.1 23 104-126 8-30 (170)
334 1ky3_A GTP-binding protein YPT 96.5 0.0014 4.9E-08 48.3 3.1 23 104-126 10-32 (182)
335 1z08_A RAS-related protein RAB 96.5 0.0015 5E-08 47.8 3.1 22 104-125 8-29 (170)
336 3q85_A GTP-binding protein REM 96.5 0.0014 4.7E-08 48.0 3.0 21 105-125 5-25 (169)
337 1c1y_A RAS-related protein RAP 96.5 0.0015 5.1E-08 47.5 3.1 22 104-125 5-26 (167)
338 1g16_A RAS-related protein SEC 96.5 0.0014 4.8E-08 47.8 2.9 22 105-126 6-27 (170)
339 1wms_A RAB-9, RAB9, RAS-relate 96.5 0.0016 5.4E-08 48.0 3.1 22 104-125 9-30 (177)
340 3dm5_A SRP54, signal recogniti 96.5 0.002 6.7E-08 57.2 4.2 40 101-140 99-138 (443)
341 3k53_A Ferrous iron transport 96.5 0.0014 4.6E-08 53.3 2.9 23 104-126 5-27 (271)
342 2fn4_A P23, RAS-related protei 96.5 0.0015 5.2E-08 48.0 3.0 22 104-125 11-32 (181)
343 1sxj_D Activator 1 41 kDa subu 96.5 0.00063 2.1E-08 56.2 0.8 23 104-126 60-82 (353)
344 3tmk_A Thymidylate kinase; pho 96.5 0.0015 5.2E-08 52.3 3.0 32 100-131 3-34 (216)
345 3clv_A RAB5 protein, putative; 96.4 0.0017 5.8E-08 48.4 3.1 22 104-125 9-30 (208)
346 3t1o_A Gliding protein MGLA; G 96.4 0.0017 5.7E-08 48.6 3.1 23 104-126 16-38 (198)
347 3tw8_B RAS-related protein RAB 96.4 0.0014 4.9E-08 48.2 2.7 22 104-125 11-32 (181)
348 2b8t_A Thymidine kinase; deoxy 96.4 0.002 6.9E-08 51.9 3.7 37 100-136 10-46 (223)
349 3pqc_A Probable GTP-binding pr 96.4 0.0015 5.1E-08 48.8 2.7 23 104-126 25-47 (195)
350 1r2q_A RAS-related protein RAB 96.4 0.0018 6.1E-08 47.1 3.1 22 104-125 8-29 (170)
351 3bc1_A RAS-related protein RAB 96.4 0.0017 6E-08 48.2 3.1 22 104-125 13-34 (195)
352 1svi_A GTP-binding protein YSX 96.4 0.0015 5.3E-08 49.0 2.7 23 103-125 24-46 (195)
353 3llm_A ATP-dependent RNA helic 96.4 0.0012 4.2E-08 52.3 2.3 26 99-124 73-98 (235)
354 4dsu_A GTPase KRAS, isoform 2B 96.4 0.0019 6.4E-08 48.0 3.1 23 104-126 6-28 (189)
355 2orw_A Thymidine kinase; TMTK, 96.4 0.0026 8.8E-08 49.3 4.0 25 101-125 2-27 (184)
356 2zts_A Putative uncharacterize 96.4 0.0025 8.6E-08 49.8 3.9 25 99-123 27-51 (251)
357 2hxs_A RAB-26, RAS-related pro 96.4 0.002 7E-08 47.4 3.2 22 104-125 8-29 (178)
358 1upt_A ARL1, ADP-ribosylation 96.4 0.002 6.7E-08 47.1 3.1 23 103-125 8-30 (171)
359 2bjv_A PSP operon transcriptio 96.4 0.0024 8.2E-08 51.2 3.8 36 102-137 29-64 (265)
360 1fzq_A ADP-ribosylation factor 96.4 0.0015 5.2E-08 49.2 2.4 28 103-130 17-49 (181)
361 2cxx_A Probable GTP-binding pr 96.4 0.0017 5.8E-08 48.4 2.7 22 105-126 4-25 (190)
362 2a9k_A RAS-related protein RAL 96.3 0.0021 7.1E-08 47.6 3.1 22 104-125 20-41 (187)
363 2oil_A CATX-8, RAS-related pro 96.3 0.0021 7E-08 48.5 3.1 23 104-126 27-49 (193)
364 1r8s_A ADP-ribosylation factor 96.3 0.0022 7.4E-08 46.7 3.1 21 105-125 3-23 (164)
365 2y8e_A RAB-protein 6, GH09086P 96.3 0.0021 7E-08 47.3 2.9 22 104-125 16-37 (179)
366 2i1q_A DNA repair and recombin 96.3 0.0027 9.1E-08 52.8 3.9 28 98-125 94-121 (322)
367 1z0f_A RAB14, member RAS oncog 96.3 0.0022 7.6E-08 47.1 3.1 23 104-126 17-39 (179)
368 2g6b_A RAS-related protein RAB 96.3 0.0022 7.6E-08 47.3 3.1 23 104-126 12-34 (180)
369 3foz_A TRNA delta(2)-isopenten 96.3 0.0024 8.1E-08 54.4 3.6 26 102-127 10-35 (316)
370 2axn_A 6-phosphofructo-2-kinas 96.3 0.0022 7.4E-08 57.6 3.4 31 100-130 33-63 (520)
371 2efe_B Small GTP-binding prote 96.3 0.0024 8.1E-08 47.2 3.1 23 104-126 14-36 (181)
372 3syl_A Protein CBBX; photosynt 96.3 0.0021 7.3E-08 52.3 3.1 26 101-126 66-91 (309)
373 3con_A GTPase NRAS; structural 96.3 0.0023 8E-08 47.9 3.1 23 104-126 23-45 (190)
374 1nrj_B SR-beta, signal recogni 96.3 0.0023 7.8E-08 49.2 3.1 23 104-126 14-36 (218)
375 2r62_A Cell division protease 96.3 0.00073 2.5E-08 54.2 0.1 22 105-126 47-68 (268)
376 2wsm_A Hydrogenase expression/ 96.2 0.0026 9E-08 49.1 3.2 25 102-126 30-54 (221)
377 2bme_A RAB4A, RAS-related prot 96.2 0.0024 8.3E-08 47.5 2.9 23 104-126 12-34 (186)
378 3lxw_A GTPase IMAP family memb 96.2 0.0024 8.2E-08 51.4 3.1 23 104-126 23-45 (247)
379 2bov_A RAla, RAS-related prote 96.2 0.0025 8.7E-08 48.1 3.1 22 104-125 16-37 (206)
380 4a1f_A DNAB helicase, replicat 96.2 0.0019 6.5E-08 55.2 2.5 47 90-136 34-80 (338)
381 1jal_A YCHF protein; nucleotid 96.2 0.0043 1.5E-07 53.6 4.8 22 103-124 3-24 (363)
382 2v1u_A Cell division control p 96.2 0.0018 6E-08 53.8 2.2 27 100-126 42-68 (387)
383 1mh1_A RAC1; GTP-binding, GTPa 96.2 0.0028 9.4E-08 46.9 3.1 22 104-125 7-28 (186)
384 3t15_A Ribulose bisphosphate c 96.2 0.0024 8.3E-08 52.7 3.0 27 100-126 34-60 (293)
385 3ihw_A Centg3; RAS, centaurin, 96.2 0.0028 9.6E-08 48.0 3.1 21 104-124 22-42 (184)
386 2chg_A Replication factor C sm 96.2 0.0024 8.2E-08 48.2 2.7 22 105-126 41-62 (226)
387 3tkl_A RAS-related protein RAB 96.2 0.0028 9.7E-08 47.5 3.1 23 104-126 18-40 (196)
388 2gf0_A GTP-binding protein DI- 96.2 0.0028 9.4E-08 47.7 3.0 22 104-125 10-31 (199)
389 1vg8_A RAS-related protein RAB 96.2 0.0029 9.9E-08 48.0 3.1 23 104-126 10-32 (207)
390 2gf9_A RAS-related protein RAB 96.2 0.0029 9.8E-08 47.6 3.1 23 104-126 24-46 (189)
391 1moz_A ARL1, ADP-ribosylation 96.2 0.0015 5.2E-08 48.5 1.5 24 101-124 17-40 (183)
392 1bif_A 6-phosphofructo-2-kinas 96.2 0.0028 9.7E-08 55.7 3.4 27 100-126 37-63 (469)
393 1m7b_A RND3/RHOE small GTP-bin 96.2 0.0028 9.5E-08 47.6 2.9 22 104-125 9-30 (184)
394 3kkq_A RAS-related protein M-R 96.1 0.0031 1.1E-07 46.9 3.1 22 104-125 20-41 (183)
395 3p32_A Probable GTPase RV1496/ 96.1 0.0032 1.1E-07 53.4 3.5 32 100-131 77-108 (355)
396 1z06_A RAS-related protein RAB 96.1 0.0032 1.1E-07 47.3 3.1 22 104-125 22-43 (189)
397 2fg5_A RAB-22B, RAS-related pr 96.1 0.003 1E-07 47.8 3.0 22 104-125 25-46 (192)
398 1ypw_A Transitional endoplasmi 96.1 0.001 3.4E-08 62.7 0.3 43 96-141 505-547 (806)
399 1ksh_A ARF-like protein 2; sma 96.1 0.003 1E-07 47.2 2.9 25 101-125 17-41 (186)
400 1zbd_A Rabphilin-3A; G protein 96.1 0.0032 1.1E-07 47.7 3.1 23 104-126 10-32 (203)
401 3bwd_D RAC-like GTP-binding pr 96.1 0.004 1.4E-07 46.0 3.5 24 103-126 9-32 (182)
402 3eph_A TRNA isopentenyltransfe 96.1 0.0031 1.1E-07 55.4 3.3 25 103-127 3-27 (409)
403 2q6t_A DNAB replication FORK h 96.1 0.0034 1.2E-07 54.8 3.5 42 90-131 188-230 (444)
404 3t5g_A GTP-binding protein RHE 96.1 0.0033 1.1E-07 46.6 2.9 21 104-124 8-28 (181)
405 3b1v_A Ferrous iron uptake tra 96.1 0.0034 1.2E-07 51.6 3.3 23 104-126 5-27 (272)
406 1xwi_A SKD1 protein; VPS4B, AA 96.1 0.0043 1.5E-07 51.9 3.9 27 100-126 43-69 (322)
407 2a5j_A RAS-related protein RAB 96.1 0.0034 1.2E-07 47.3 3.1 23 104-126 23-45 (191)
408 1x3s_A RAS-related protein RAB 96.1 0.0035 1.2E-07 46.9 3.1 23 104-126 17-39 (195)
409 3oes_A GTPase rhebl1; small GT 96.1 0.0032 1.1E-07 48.0 2.9 24 103-126 25-48 (201)
410 3cbq_A GTP-binding protein REM 96.1 0.0023 7.9E-08 49.0 2.1 22 104-125 25-46 (195)
411 1d2n_A N-ethylmaleimide-sensit 96.1 0.0037 1.3E-07 50.4 3.3 27 100-126 62-88 (272)
412 1ofh_A ATP-dependent HSL prote 96.0 0.0028 9.7E-08 51.2 2.6 25 102-126 50-74 (310)
413 3dz8_A RAS-related protein RAB 96.0 0.0034 1.2E-07 47.4 2.9 23 104-126 25-47 (191)
414 1knx_A Probable HPR(Ser) kinas 96.0 0.006 2E-07 51.7 4.7 38 86-124 132-169 (312)
415 3fdi_A Uncharacterized protein 96.0 0.0036 1.2E-07 49.1 3.1 24 103-126 7-30 (201)
416 4bas_A ADP-ribosylation factor 96.0 0.0032 1.1E-07 47.4 2.7 24 103-126 18-41 (199)
417 2xtp_A GTPase IMAP family memb 96.0 0.0034 1.2E-07 50.1 3.0 23 103-125 23-45 (260)
418 2bcg_Y Protein YP2, GTP-bindin 96.0 0.0035 1.2E-07 47.7 2.9 23 104-126 10-32 (206)
419 2atv_A RERG, RAS-like estrogen 96.0 0.0038 1.3E-07 47.3 3.1 23 103-125 29-51 (196)
420 1zj6_A ADP-ribosylation factor 96.0 0.0036 1.2E-07 46.9 2.9 24 102-125 16-39 (187)
421 2il1_A RAB12; G-protein, GDP, 96.0 0.0031 1.1E-07 47.8 2.6 22 105-126 29-50 (192)
422 3t5d_A Septin-7; GTP-binding p 96.0 0.0029 9.9E-08 51.4 2.5 22 104-125 10-31 (274)
423 1xp8_A RECA protein, recombina 96.0 0.0038 1.3E-07 53.7 3.4 39 99-138 71-110 (366)
424 3hws_A ATP-dependent CLP prote 96.0 0.0032 1.1E-07 53.1 2.8 26 101-126 50-75 (363)
425 3cph_A RAS-related protein SEC 96.0 0.0039 1.3E-07 47.5 3.1 24 102-125 20-43 (213)
426 4dhe_A Probable GTP-binding pr 96.0 0.0019 6.5E-08 49.8 1.3 23 103-125 30-52 (223)
427 1zd9_A ADP-ribosylation factor 96.0 0.0039 1.3E-07 47.0 3.1 22 104-125 24-45 (188)
428 3reg_A RHO-like small GTPase; 96.0 0.004 1.4E-07 47.0 3.1 23 104-126 25-47 (194)
429 3uk6_A RUVB-like 2; hexameric 96.0 0.0038 1.3E-07 52.1 3.1 27 101-127 69-95 (368)
430 2f7s_A C25KG, RAS-related prot 95.9 0.0041 1.4E-07 47.8 3.0 23 104-126 27-49 (217)
431 2h17_A ADP-ribosylation factor 95.9 0.0034 1.2E-07 47.0 2.5 22 104-125 23-44 (181)
432 2ew1_A RAS-related protein RAB 95.9 0.0039 1.3E-07 48.2 2.9 23 104-126 28-50 (201)
433 2o52_A RAS-related protein RAB 95.9 0.0039 1.3E-07 47.7 2.8 22 104-125 27-48 (200)
434 2z4s_A Chromosomal replication 95.9 0.0033 1.1E-07 55.0 2.7 25 102-126 130-154 (440)
435 1yrb_A ATP(GTP)binding protein 95.9 0.0059 2E-07 48.4 3.9 39 99-138 11-49 (262)
436 2dby_A GTP-binding protein; GD 95.9 0.0039 1.3E-07 53.8 3.1 21 105-125 4-24 (368)
437 2cjw_A GTP-binding protein GEM 95.9 0.0044 1.5E-07 47.3 3.1 21 104-124 8-28 (192)
438 2fv8_A H6, RHO-related GTP-bin 95.9 0.0042 1.4E-07 47.6 3.0 23 104-126 27-49 (207)
439 2qu8_A Putative nucleolar GTP- 95.9 0.0039 1.4E-07 48.7 2.9 24 103-126 30-53 (228)
440 2h57_A ADP-ribosylation factor 95.9 0.0029 1E-07 47.6 2.0 24 103-126 22-45 (190)
441 2iwr_A Centaurin gamma 1; ANK 95.9 0.0032 1.1E-07 46.5 2.2 22 104-125 9-30 (178)
442 2fh5_B SR-beta, signal recogni 95.9 0.0045 1.5E-07 47.5 3.1 23 104-126 9-31 (214)
443 3c5c_A RAS-like protein 12; GD 95.9 0.0046 1.6E-07 46.7 3.1 22 104-125 23-44 (187)
444 2q3h_A RAS homolog gene family 95.9 0.0044 1.5E-07 46.9 3.0 23 103-125 21-43 (201)
445 2e87_A Hypothetical protein PH 95.9 0.0041 1.4E-07 52.7 3.0 26 101-126 166-191 (357)
446 2hf9_A Probable hydrogenase ni 95.9 0.0047 1.6E-07 47.8 3.2 24 103-126 39-62 (226)
447 2qgz_A Helicase loader, putati 95.9 0.0051 1.7E-07 51.3 3.5 30 102-131 152-182 (308)
448 1wf3_A GTP-binding protein; GT 95.9 0.0048 1.7E-07 51.3 3.3 22 104-125 9-30 (301)
449 2p5s_A RAS and EF-hand domain 95.9 0.0059 2E-07 46.4 3.6 26 101-126 27-52 (199)
450 3llu_A RAS-related GTP-binding 95.9 0.0045 1.5E-07 47.1 2.9 23 104-126 22-44 (196)
451 3iev_A GTP-binding protein ERA 95.8 0.0049 1.7E-07 51.2 3.3 23 103-125 11-33 (308)
452 1gwn_A RHO-related GTP-binding 95.8 0.0046 1.6E-07 47.8 2.9 23 104-126 30-52 (205)
453 3iby_A Ferrous iron transport 95.8 0.0046 1.6E-07 50.2 2.9 23 104-126 3-25 (256)
454 2fu5_C RAS-related protein RAB 95.8 0.0029 1E-07 47.0 1.6 22 104-125 10-31 (183)
455 2atx_A Small GTP binding prote 95.8 0.005 1.7E-07 46.3 3.0 22 104-125 20-41 (194)
456 2v3c_C SRP54, signal recogniti 95.8 0.0021 7E-08 56.6 0.9 38 102-139 99-136 (432)
457 2gco_A H9, RHO-related GTP-bin 95.8 0.005 1.7E-07 47.0 2.9 22 104-125 27-48 (201)
458 2r44_A Uncharacterized protein 95.8 0.0012 4.1E-08 54.7 -0.7 36 91-126 35-70 (331)
459 3pvs_A Replication-associated 95.8 0.0017 5.7E-08 57.3 0.2 28 99-126 45-74 (447)
460 2j1l_A RHO-related GTP-binding 95.8 0.005 1.7E-07 47.6 2.9 22 104-125 36-57 (214)
461 3eie_A Vacuolar protein sortin 95.8 0.0059 2E-07 50.7 3.5 26 101-126 50-75 (322)
462 3pfi_A Holliday junction ATP-d 95.7 0.005 1.7E-07 50.9 2.9 23 104-126 57-79 (338)
463 3co5_A Putative two-component 95.7 0.0027 9.1E-08 46.7 1.1 24 102-125 27-50 (143)
464 1xx6_A Thymidine kinase; NESG, 95.7 0.0068 2.3E-07 47.5 3.5 32 100-131 6-37 (191)
465 1um8_A ATP-dependent CLP prote 95.7 0.0051 1.8E-07 52.0 3.0 25 102-126 72-96 (376)
466 2qby_B CDC6 homolog 3, cell di 95.7 0.0055 1.9E-07 51.1 3.1 26 101-126 44-69 (384)
467 3d8b_A Fidgetin-like protein 1 95.7 0.0057 2E-07 51.7 3.2 27 100-126 115-141 (357)
468 1jwy_B Dynamin A GTPase domain 95.7 0.0059 2E-07 49.9 3.2 22 104-125 26-47 (315)
469 2b6h_A ADP-ribosylation factor 95.7 0.0049 1.7E-07 46.9 2.5 22 103-124 30-51 (192)
470 2aka_B Dynamin-1; fusion prote 95.7 0.0054 1.8E-07 49.6 2.7 23 104-126 28-50 (299)
471 3a1s_A Iron(II) transport prot 95.7 0.0062 2.1E-07 49.4 3.1 23 104-126 7-29 (258)
472 1sky_E F1-ATPase, F1-ATP synth 95.7 0.007 2.4E-07 54.1 3.7 42 90-132 140-182 (473)
473 4hlc_A DTMP kinase, thymidylat 95.6 0.0071 2.4E-07 47.7 3.3 26 102-127 2-27 (205)
474 2hup_A RAS-related protein RAB 95.6 0.0066 2.3E-07 46.4 3.0 23 104-126 31-53 (201)
475 3i8s_A Ferrous iron transport 95.6 0.0063 2.1E-07 49.7 3.0 23 104-126 5-27 (274)
476 3gmt_A Adenylate kinase; ssgci 95.6 0.0062 2.1E-07 49.5 2.8 23 104-126 10-32 (230)
477 3io5_A Recombination and repai 95.6 0.0056 1.9E-07 52.4 2.6 41 99-140 26-68 (333)
478 3cpj_B GTP-binding protein YPT 95.5 0.0074 2.5E-07 46.8 3.1 23 104-126 15-37 (223)
479 4gzl_A RAS-related C3 botulinu 95.5 0.0071 2.4E-07 46.4 2.9 23 103-125 31-53 (204)
480 2vhj_A Ntpase P4, P4; non- hyd 95.5 0.0086 3E-07 51.2 3.7 28 98-125 119-146 (331)
481 3bgw_A DNAB-like replicative h 95.5 0.01 3.5E-07 52.1 4.2 48 91-138 186-233 (444)
482 1jr3_A DNA polymerase III subu 95.5 0.0021 7.2E-08 53.4 -0.2 23 104-126 40-62 (373)
483 2j0v_A RAC-like GTP-binding pr 95.5 0.0075 2.6E-07 46.1 2.9 22 104-125 11-32 (212)
484 1h65_A Chloroplast outer envel 95.5 0.0072 2.5E-07 48.9 2.9 23 104-126 41-63 (270)
485 3q3j_B RHO-related GTP-binding 95.5 0.008 2.7E-07 46.6 3.1 22 104-125 29-50 (214)
486 3def_A T7I23.11 protein; chlor 95.5 0.0075 2.6E-07 48.6 3.0 23 104-126 38-60 (262)
487 3hdt_A Putative kinase; struct 95.5 0.0075 2.6E-07 48.4 2.9 25 102-126 14-38 (223)
488 2zan_A Vacuolar protein sortin 95.5 0.013 4.3E-07 51.3 4.5 27 100-126 165-191 (444)
489 1ojl_A Transcriptional regulat 95.4 0.0061 2.1E-07 50.6 2.4 30 100-129 23-52 (304)
490 2yc2_C IFT27, small RAB-relate 95.4 0.003 1E-07 47.7 0.4 22 104-125 22-43 (208)
491 2qen_A Walker-type ATPase; unk 95.4 0.0034 1.2E-07 51.3 0.7 26 101-126 30-55 (350)
492 2xxa_A Signal recognition part 95.4 0.0084 2.9E-07 52.7 3.2 41 100-140 98-139 (433)
493 4djt_A GTP-binding nuclear pro 95.4 0.0033 1.1E-07 48.3 0.5 22 104-125 13-34 (218)
494 2qp9_X Vacuolar protein sortin 95.4 0.007 2.4E-07 51.3 2.5 26 101-126 83-108 (355)
495 2x77_A ADP-ribosylation factor 95.4 0.005 1.7E-07 46.1 1.5 22 103-124 23-44 (189)
496 4b4t_K 26S protease regulatory 95.3 0.01 3.5E-07 52.3 3.6 40 99-141 203-242 (428)
497 2g3y_A GTP-binding protein GEM 95.3 0.0095 3.3E-07 46.9 3.0 21 104-124 39-59 (211)
498 4b4t_L 26S protease subunit RP 95.3 0.01 3.6E-07 52.4 3.5 28 99-126 212-239 (437)
499 4dcu_A GTP-binding protein ENG 95.3 0.0078 2.7E-07 52.6 2.6 22 104-125 25-46 (456)
500 1sxj_A Activator 1 95 kDa subu 95.3 0.017 5.9E-07 51.2 4.9 36 102-140 77-112 (516)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.83 E-value=7.8e-21 Score=165.56 Aligned_cols=95 Identities=21% Similarity=0.292 Sum_probs=80.1
Q ss_pred CcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcc
Q 030515 68 NNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLN 146 (176)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~ 146 (176)
+.+++++++++.|+.. .+.+.+|+++||++++||+++|+||||||||||+|+|+|++ |++|+| .++|+++...
T Consensus 22 ~~mi~v~~ls~~y~~~--~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I--~i~G~~i~~~-- 95 (366)
T 3tui_C 22 KHMIKLSNITKVFHQG--TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSV--LVDGQELTTL-- 95 (366)
T ss_dssp -CCEEEEEEEEEEECS--SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE--EETTEECSSC--
T ss_pred CceEEEEeEEEEeCCC--CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEE--EECCEECCcC--
Confidence 3468899998886422 23467999999999999999999999999999999999999 899999 9999999764
Q ss_pred cCcccChhhHHHhhcceEEecccccccc
Q 030515 147 RDLSFKAEDRVENIRRIGSVFVLSIHLF 174 (176)
Q Consensus 147 ~d~~~~~~~~~~~rrrig~V~Q~f~~lf 174 (176)
+..++...|++||||||++ .+|
T Consensus 96 -----~~~~~~~~r~~Ig~v~Q~~-~l~ 117 (366)
T 3tui_C 96 -----SESELTKARRQIGMIFQHF-NLL 117 (366)
T ss_dssp -----CHHHHHHHHTTEEEECSSC-CCC
T ss_pred -----CHHHHHHHhCcEEEEeCCC-ccC
Confidence 5566777788899999997 444
No 2
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.81 E-value=5.1e-20 Score=154.45 Aligned_cols=86 Identities=20% Similarity=0.199 Sum_probs=73.5
Q ss_pred EEEeccceeeeccccccC-cccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCccc
Q 030515 70 LCQNSTVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNR 147 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~-~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~ 147 (176)
+++++++++. |+ ...+|+++||++++||+++|+||||||||||+++|+|++ |++|+| .++|+++..
T Consensus 7 ~l~i~~ls~~------y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I--~~~G~~i~~---- 74 (275)
T 3gfo_A 7 ILKVEELNYN------YSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI--LFDNKPIDY---- 74 (275)
T ss_dssp EEEEEEEEEE------CTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEE--EETTEECCC----
T ss_pred EEEEEEEEEE------ECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEE--EECCEECCc----
Confidence 5788888877 54 345999999999999999999999999999999999999 899999 999999842
Q ss_pred CcccChhhHHHhhcceEEeccccc
Q 030515 148 DLSFKAEDRVENIRRIGSVFVLSI 171 (176)
Q Consensus 148 d~~~~~~~~~~~rrrig~V~Q~f~ 171 (176)
......+++++||||||++.
T Consensus 75 ----~~~~~~~~~~~ig~v~Q~~~ 94 (275)
T 3gfo_A 75 ----SRKGIMKLRESIGIVFQDPD 94 (275)
T ss_dssp ----SHHHHHHHHHSEEEECSSGG
T ss_pred ----ccccHHHHhCcEEEEEcCcc
Confidence 23455667788999999864
No 3
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.81 E-value=3.8e-20 Score=151.46 Aligned_cols=89 Identities=22% Similarity=0.228 Sum_probs=72.4
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
++++++++.|+.. .....+++++||++++||+++|+||||||||||+++|+|++ |++|+| .++|+++...
T Consensus 2 l~~~~l~~~y~~~--~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I--~~~g~~~~~~----- 72 (235)
T 3tif_A 2 VKLKNVTKTYKMG--EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEV--YIDNIKTNDL----- 72 (235)
T ss_dssp EEEEEEEEEEEET--TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE--EETTEECTTC-----
T ss_pred EEEEEEEEEeCCC--CcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEE--EECCEEcccC-----
Confidence 5677777774321 11346899999999999999999999999999999999999 899999 9999998754
Q ss_pred ccChhhHHHhhc-ceEEecccc
Q 030515 150 SFKAEDRVENIR-RIGSVFVLS 170 (176)
Q Consensus 150 ~~~~~~~~~~rr-rig~V~Q~f 170 (176)
+..+....++ +||||||++
T Consensus 73 --~~~~~~~~~~~~i~~v~Q~~ 92 (235)
T 3tif_A 73 --DDDELTKIRRDKIGFVFQQF 92 (235)
T ss_dssp --CHHHHHHHHHHHEEEECTTC
T ss_pred --CHHHHHHHhhccEEEEecCC
Confidence 4455555554 599999987
No 4
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.81 E-value=5.7e-20 Score=149.27 Aligned_cols=86 Identities=27% Similarity=0.317 Sum_probs=72.5
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
+++++++.+. |+...+++++||++++||+++|+||||||||||+++|+|++ |++|+| .++|+++...
T Consensus 4 ~l~~~~l~~~------y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~~~~~---- 71 (224)
T 2pcj_A 4 ILRAENIKKV------IRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKV--FLEGKEVDYT---- 71 (224)
T ss_dssp EEEEEEEEEE------ETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEE--EETTEECCSS----
T ss_pred EEEEEeEEEE------ECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE--EECCEECCCC----
Confidence 5777787777 56678999999999999999999999999999999999999 799999 9999998643
Q ss_pred cccChhhHHHhh-cceEEecccc
Q 030515 149 LSFKAEDRVENI-RRIGSVFVLS 170 (176)
Q Consensus 149 ~~~~~~~~~~~r-rrig~V~Q~f 170 (176)
...+....+ ++|+||||++
T Consensus 72 ---~~~~~~~~~~~~i~~v~q~~ 91 (224)
T 2pcj_A 72 ---NEKELSLLRNRKLGFVFQFH 91 (224)
T ss_dssp ---CHHHHHHHHHHHEEEECSSC
T ss_pred ---CHHHHHHHHhCcEEEEecCc
Confidence 333344444 5799999986
No 5
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.80 E-value=3e-20 Score=161.43 Aligned_cols=88 Identities=24% Similarity=0.265 Sum_probs=72.8
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
+++++++++. |+...+|+++||++++||+++|+||||||||||+|+|+|++ |++|+| .++|+++...
T Consensus 4 ~l~i~~ls~~------y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I--~i~G~~i~~~---- 71 (359)
T 3fvq_A 4 ALHIGHLSKS------FQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI--SLSGKTIFSK---- 71 (359)
T ss_dssp CEEEEEEEEE------ETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEE--EETTEEEESS----
T ss_pred EEEEEeEEEE------ECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEE--EECCEECccc----
Confidence 4778888887 67778999999999999999999999999999999999999 899999 9999998431
Q ss_pred cccChhhHHHhhcceEEecccccccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLSIHLF 174 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f~~lf 174 (176)
.......+|+||||||++ .+|
T Consensus 72 ----~~~~~~~~r~ig~vfQ~~-~l~ 92 (359)
T 3fvq_A 72 ----NTNLPVRERRLGYLVQEG-VLF 92 (359)
T ss_dssp ----SCBCCGGGSCCEEECTTC-CCC
T ss_pred ----ccccchhhCCEEEEeCCC-cCC
Confidence 011122346799999987 344
No 6
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.79 E-value=1.4e-19 Score=149.80 Aligned_cols=86 Identities=22% Similarity=0.233 Sum_probs=72.5
Q ss_pred CcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcc
Q 030515 68 NNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLN 146 (176)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~ 146 (176)
+.+++++++.+. |+...+++++||++++||+++|+||||||||||+++|+|++ |++|+| .++|+++...
T Consensus 5 ~~~l~i~~l~~~------y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i--~~~g~~~~~~-- 74 (257)
T 1g6h_A 5 MEILRTENIVKY------FGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV--YFENKDITNK-- 74 (257)
T ss_dssp CEEEEEEEEEEE------ETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE--EETTEECTTC--
T ss_pred CcEEEEeeeEEE------ECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE--EECCEECCCC--
Confidence 346788888877 56668999999999999999999999999999999999999 799999 9999998542
Q ss_pred cCcccChhhHHHhhcceEEecccc
Q 030515 147 RDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 147 ~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
......+++|+||+|++
T Consensus 75 -------~~~~~~~~~i~~v~q~~ 91 (257)
T 1g6h_A 75 -------EPAELYHYGIVRTFQTP 91 (257)
T ss_dssp -------CHHHHHHHTEEECCCCC
T ss_pred -------CHHHHHhCCEEEEccCC
Confidence 12233456799999986
No 7
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.79 E-value=5.8e-20 Score=160.80 Aligned_cols=85 Identities=25% Similarity=0.248 Sum_probs=72.8
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCccc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNR 147 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~ 147 (176)
.+++++++.+. |+...+|+++||++++||+++|+||||||||||+|+|+|++ |++|+| .++|+++...
T Consensus 2 ~~l~~~~l~~~------yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I--~i~G~~~~~~--- 70 (381)
T 3rlf_A 2 ASVQLQNVTKA------WGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL--FIGEKRMNDT--- 70 (381)
T ss_dssp CCEEEEEEEEE------ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE--EETTEECTTC---
T ss_pred CEEEEEeEEEE------ECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEE--EECCEECCCC---
Confidence 35778888887 67778999999999999999999999999999999999999 899999 9999998642
Q ss_pred CcccChhhHHHhhcceEEecccccccc
Q 030515 148 DLSFKAEDRVENIRRIGSVFVLSIHLF 174 (176)
Q Consensus 148 d~~~~~~~~~~~rrrig~V~Q~f~~lf 174 (176)
.. .+|+||||||++ .+|
T Consensus 71 ----~~-----~~r~ig~VfQ~~-~l~ 87 (381)
T 3rlf_A 71 ----PP-----AERGVGMVFQSY-ALY 87 (381)
T ss_dssp ----CG-----GGSCEEEECTTC-CCC
T ss_pred ----CH-----HHCCEEEEecCC-cCC
Confidence 11 136799999987 344
No 8
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.79 E-value=1.9e-19 Score=149.99 Aligned_cols=86 Identities=23% Similarity=0.140 Sum_probs=73.8
Q ss_pred CcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcc
Q 030515 68 NNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLN 146 (176)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~ 146 (176)
+.+++++++++. |+...+|+++||++++||+++|+||||||||||+++|+|++ |++|+| .++|+++...
T Consensus 9 ~~~l~~~~l~~~------~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I--~~~g~~~~~~-- 78 (266)
T 4g1u_C 9 VALLEASHLHYH------VQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGEC--HLLGQNLNSW-- 78 (266)
T ss_dssp CCEEEEEEEEEE------ETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEE--EETTEETTTS--
T ss_pred cceEEEEeEEEE------eCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE--EECCEECCcC--
Confidence 346788888777 67778999999999999999999999999999999999999 899999 9999998653
Q ss_pred cCcccChhhHHHhhcceEEeccccc
Q 030515 147 RDLSFKAEDRVENIRRIGSVFVLSI 171 (176)
Q Consensus 147 ~d~~~~~~~~~~~rrrig~V~Q~f~ 171 (176)
...+.++.+++++|++.
T Consensus 79 --------~~~~~~~~i~~v~q~~~ 95 (266)
T 4g1u_C 79 --------QPKALARTRAVMRQYSE 95 (266)
T ss_dssp --------CHHHHHHHEEEECSCCC
T ss_pred --------CHHHHhheEEEEecCCc
Confidence 23345567999999763
No 9
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.79 E-value=1.3e-19 Score=150.97 Aligned_cols=85 Identities=27% Similarity=0.314 Sum_probs=71.9
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
+++++++.+. |+...+++++||++++||+++|+||||||||||+++|+|++ |++|+| .++|+++. .
T Consensus 24 ~l~i~~l~~~------y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I--~~~g~~i~-~---- 90 (263)
T 2olj_A 24 MIDVHQLKKS------FGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI--IIDGINLK-A---- 90 (263)
T ss_dssp SEEEEEEEEE------ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE--EETTEESS-S----
T ss_pred eEEEEeEEEE------ECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEE--EECCEECC-C----
Confidence 4777777777 56668999999999999999999999999999999999999 799999 99999884 1
Q ss_pred cccChhhHHHhhcceEEecccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f 170 (176)
...+....+++|+||||++
T Consensus 91 ---~~~~~~~~~~~i~~v~Q~~ 109 (263)
T 2olj_A 91 ---KDTNLNKVREEVGMVFQRF 109 (263)
T ss_dssp ---TTCCHHHHHHHEEEECSSC
T ss_pred ---ccccHHHHhCcEEEEeCCC
Confidence 1123445567899999986
No 10
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.79 E-value=2.7e-19 Score=146.64 Aligned_cols=84 Identities=19% Similarity=0.255 Sum_probs=70.4
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
+++++++.+. |+...+++++||++++||+++|+||||||||||+++|+|++ |++|+| .++|+++...
T Consensus 6 ~l~~~~l~~~------y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~~~~~---- 73 (240)
T 1ji0_A 6 VLEVQSLHVY------YGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI--IFNGQDITNK---- 73 (240)
T ss_dssp EEEEEEEEEE------ETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE--EETTEECTTC----
T ss_pred eEEEEeEEEE------ECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE--EECCEECCCC----
Confidence 5778888777 55668999999999999999999999999999999999999 899999 9999998542
Q ss_pred cccChhhHHHhhcceEEecccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f 170 (176)
. .....+++|+||+|++
T Consensus 74 ---~--~~~~~~~~i~~v~q~~ 90 (240)
T 1ji0_A 74 ---P--AHVINRMGIALVPEGR 90 (240)
T ss_dssp ---C--HHHHHHTTEEEECSSC
T ss_pred ---C--HHHHHhCCEEEEecCC
Confidence 1 1112345699999986
No 11
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.79 E-value=2.1e-19 Score=149.24 Aligned_cols=93 Identities=23% Similarity=0.168 Sum_probs=72.3
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCccc-
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNR- 147 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~- 147 (176)
+++++++.+. |+...+++++||++++||+++|+||||||||||+++|+|++ |++|+| .++|+++......
T Consensus 6 ~l~i~~l~~~------y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i--~~~g~~~~~~~~~~ 77 (262)
T 1b0u_A 6 KLHVIDLHKR------YGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI--IVNGQNINLVRDKD 77 (262)
T ss_dssp CEEEEEEEEE------ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE--EETTEECCEEECTT
T ss_pred eEEEeeEEEE------ECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE--EECCEEcccccccc
Confidence 4777777777 56678999999999999999999999999999999999999 799999 9999987410000
Q ss_pred Cc--ccChhhHHHhhcceEEecccc
Q 030515 148 DL--SFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 148 d~--~~~~~~~~~~rrrig~V~Q~f 170 (176)
+. ..+..+....+++||||||++
T Consensus 78 ~~~~~~~~~~~~~~~~~i~~v~Q~~ 102 (262)
T 1b0u_A 78 GQLKVADKNQLRLLRTRLTMVFQHF 102 (262)
T ss_dssp SSEEESCHHHHHHHHHHEEEECSSC
T ss_pred ccccccChhhHHHHhcceEEEecCc
Confidence 00 002233445567899999985
No 12
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.78 E-value=2.7e-19 Score=148.50 Aligned_cols=85 Identities=15% Similarity=0.108 Sum_probs=72.5
Q ss_pred CCcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCc
Q 030515 67 GNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGL 145 (176)
Q Consensus 67 g~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~ 145 (176)
.|.+++++++++. |+...+++++||++++||+++|+||||||||||+++|+|++ |++|+| .++|+++..
T Consensus 12 ~~~~l~i~~l~~~------y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I--~~~g~~~~~-- 81 (256)
T 1vpl_A 12 HMGAVVVKDLRKR------IGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV--TVFGKNVVE-- 81 (256)
T ss_dssp --CCEEEEEEEEE------ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE--EETTEETTT--
T ss_pred cCCeEEEEEEEEE------ECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEE--EECCEECCc--
Confidence 4677888888888 56668999999999999999999999999999999999999 799999 999998853
Q ss_pred ccCcccChhhHHHhhcceEEecccc
Q 030515 146 NRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 146 ~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
.....+++||||+|++
T Consensus 82 ---------~~~~~~~~i~~v~q~~ 97 (256)
T 1vpl_A 82 ---------EPHEVRKLISYLPEEA 97 (256)
T ss_dssp ---------CHHHHHTTEEEECTTC
T ss_pred ---------cHHHHhhcEEEEcCCC
Confidence 1234567899999986
No 13
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.77 E-value=5.1e-19 Score=145.81 Aligned_cols=82 Identities=28% Similarity=0.275 Sum_probs=69.4
Q ss_pred EEeccceeeecccccc--CcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCccc
Q 030515 71 CQNSTVAKSTNILWHK--NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNR 147 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~--~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~ 147 (176)
++++++++. | +...+++++||++++||+++|+|+||||||||+++|+|++ |++|+| .++|+++...
T Consensus 8 ~~~~~l~~~------y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I--~i~g~~~~~~--- 76 (247)
T 2ff7_A 8 ITFRNIRFR------YKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV--LIDGHDLALA--- 76 (247)
T ss_dssp EEEEEEEEE------SSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE--EETTEETTTS---
T ss_pred eeEEEEEEE------eCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE--EECCEEhhhC---
Confidence 456677766 5 3567999999999999999999999999999999999999 799999 9999998542
Q ss_pred CcccChhhHHHhhcceEEecccc
Q 030515 148 DLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 148 d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
...+++++|+||+|++
T Consensus 77 -------~~~~~~~~i~~v~Q~~ 92 (247)
T 2ff7_A 77 -------DPNWLRRQVGVVLQDN 92 (247)
T ss_dssp -------CHHHHHHHEEEECSSC
T ss_pred -------CHHHHHhcEEEEeCCC
Confidence 2334567799999986
No 14
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.77 E-value=2.4e-19 Score=155.69 Aligned_cols=82 Identities=21% Similarity=0.197 Sum_probs=70.6
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
+++++++.+. |+...+++++||++++||+++|+||||||||||+|+|+|++ |++|+| .++|+++...
T Consensus 3 ~l~~~~l~~~------y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I--~i~g~~i~~~---- 70 (359)
T 2yyz_A 3 SIRVVNLKKY------FGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEI--YFDDVLVNDI---- 70 (359)
T ss_dssp CEEEEEEEEE------ETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEE--EETTEECTTS----
T ss_pred EEEEEEEEEE------ECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEE--EECCEECCCC----
Confidence 4677788777 56678999999999999999999999999999999999999 899999 9999998642
Q ss_pred cccChhhHHHhhcceEEeccccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLSI 171 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f~ 171 (176)
.. .+|+||||||++.
T Consensus 71 ---~~-----~~r~ig~v~Q~~~ 85 (359)
T 2yyz_A 71 ---PP-----KYREVGMVFQNYA 85 (359)
T ss_dssp ---CG-----GGTTEEEECSSCC
T ss_pred ---Ch-----hhCcEEEEecCcc
Confidence 11 2467999999863
No 15
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.77 E-value=3.4e-19 Score=154.88 Aligned_cols=82 Identities=23% Similarity=0.254 Sum_probs=70.6
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
+++++++.+. |+...+++++||++++||+++|+||||||||||+|+|+|++ |++|+| .++|+++...
T Consensus 3 ~l~~~~l~~~------y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I--~i~g~~i~~~---- 70 (362)
T 2it1_A 3 EIKLENIVKK------FGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKI--YFDEKDVTEL---- 70 (362)
T ss_dssp CEEEEEEEEE------SSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE--EETTEECTTS----
T ss_pred EEEEEeEEEE------ECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEE--EECCEECCcC----
Confidence 4677777777 66778999999999999999999999999999999999999 899999 9999998642
Q ss_pred cccChhhHHHhhcceEEeccccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLSI 171 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f~ 171 (176)
.. .+|+||||||++.
T Consensus 71 ---~~-----~~r~ig~v~Q~~~ 85 (362)
T 2it1_A 71 ---PP-----KDRNVGLVFQNWA 85 (362)
T ss_dssp ---CG-----GGTTEEEECTTCC
T ss_pred ---CH-----hHCcEEEEecCcc
Confidence 11 2367999999863
No 16
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.77 E-value=3.8e-19 Score=154.27 Aligned_cols=85 Identities=20% Similarity=0.221 Sum_probs=73.1
Q ss_pred CCcEEEeccceeeecccccc-CcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCC
Q 030515 67 GNNLCQNSTVAKSTNILWHK-NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHG 144 (176)
Q Consensus 67 g~~~~~~~~~~~~~~~~~~~-~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~ 144 (176)
|..+++++++.+. | +...+++++||++++||+++|+||||||||||+|+|+|++ |++|+| .++|+++...
T Consensus 11 ~~~~l~~~~l~~~------y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I--~i~g~~i~~~ 82 (355)
T 1z47_A 11 GSMTIEFVGVEKI------YPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV--WIGGKRVTDL 82 (355)
T ss_dssp CCEEEEEEEEEEC------CTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEE--EETTEECTTC
T ss_pred CCceEEEEEEEEE------EcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEE--EECCEECCcC
Confidence 4557888888887 5 6678999999999999999999999999999999999999 899999 9999998542
Q ss_pred cccCcccChhhHHHhhcceEEeccccc
Q 030515 145 LNRDLSFKAEDRVENIRRIGSVFVLSI 171 (176)
Q Consensus 145 ~~~d~~~~~~~~~~~rrrig~V~Q~f~ 171 (176)
. ..+|+||||||++.
T Consensus 83 -------~-----~~~r~ig~v~Q~~~ 97 (355)
T 1z47_A 83 -------P-----PQKRNVGLVFQNYA 97 (355)
T ss_dssp -------C-----GGGSSEEEECGGGC
T ss_pred -------C-----hhhCcEEEEecCcc
Confidence 1 12478999999863
No 17
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.77 E-value=4.5e-19 Score=148.78 Aligned_cols=86 Identities=22% Similarity=0.120 Sum_probs=71.4
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCccc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNR 147 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~ 147 (176)
.+++++++.+. |+...+++++||++++||+++|+||||||||||+|+|+|++ |++|+| .++|+++...
T Consensus 20 ~~l~~~~l~~~------y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I--~~~g~~~~~~--- 88 (279)
T 2ihy_A 20 MLIQLDQIGRM------KQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV--NLFGKMPGKV--- 88 (279)
T ss_dssp EEEEEEEEEEE------ETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE--EETTBCCC-----
T ss_pred ceEEEEeEEEE------ECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEE--EECCEEcccc---
Confidence 35788888777 56668999999999999999999999999999999999999 799999 9999887410
Q ss_pred CcccChhhHHHhhcceEEecccc
Q 030515 148 DLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 148 d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
.....+.+++|+||+|++
T Consensus 89 -----~~~~~~~~~~i~~v~Q~~ 106 (279)
T 2ihy_A 89 -----GYSAETVRQHIGFVSHSL 106 (279)
T ss_dssp ------CCHHHHHTTEEEECHHH
T ss_pred -----cCCHHHHcCcEEEEEcCc
Confidence 112334567899999975
No 18
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.77 E-value=3.3e-19 Score=155.37 Aligned_cols=89 Identities=19% Similarity=0.137 Sum_probs=71.3
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCccc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNR 147 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~ 147 (176)
.+++++++.+. |+...+++++||++++||+++|+||||||||||+|+|+|++ |++|+| .++|+++... ..
T Consensus 2 ~~l~~~~l~~~------y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I--~i~g~~~~~~-~~ 72 (372)
T 1g29_1 2 AGVRLVDVWKV------FGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI--YIGDKLVADP-EK 72 (372)
T ss_dssp EEEEEEEEEEE------ETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEE--EETTEEEEEG-GG
T ss_pred CEEEEEeEEEE------ECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEE--EECCEECccc-cc
Confidence 35778888887 56678999999999999999999999999999999999999 899999 9999998531 00
Q ss_pred CcccChhhHHHhhcceEEeccccc
Q 030515 148 DLSFKAEDRVENIRRIGSVFVLSI 171 (176)
Q Consensus 148 d~~~~~~~~~~~rrrig~V~Q~f~ 171 (176)
.. .....+|+||||||++.
T Consensus 73 ~~-----~~~~~~r~ig~v~Q~~~ 91 (372)
T 1g29_1 73 GI-----FVPPKDRDIAMVFQSYA 91 (372)
T ss_dssp TE-----ECCGGGSSEEEECSCCC
T ss_pred cc-----cCCHhHCCEEEEeCCCc
Confidence 00 01112477999999863
No 19
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.77 E-value=3.5e-19 Score=155.28 Aligned_cols=84 Identities=17% Similarity=0.157 Sum_probs=69.9
Q ss_pred CcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcc
Q 030515 68 NNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLN 146 (176)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~ 146 (176)
|.+++++++.+. |+...+++++||++++||+++|+||||||||||+|+|+|++ |++|+| .++|+++...
T Consensus 9 M~~l~~~~l~~~------y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I--~i~g~~i~~~-- 78 (372)
T 1v43_A 9 MVEVKLENLTKR------FGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI--YFGDRDVTYL-- 78 (372)
T ss_dssp CCCEEEEEEEEE------ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE--EETTEECTTS--
T ss_pred eeeEEEEEEEEE------ECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEE--EECCEECCCC--
Confidence 445788888887 56678999999999999999999999999999999999999 899999 9999998642
Q ss_pred cCcccChhhHHHhhcceEEeccccc
Q 030515 147 RDLSFKAEDRVENIRRIGSVFVLSI 171 (176)
Q Consensus 147 ~d~~~~~~~~~~~rrrig~V~Q~f~ 171 (176)
.. .+|+||||||++.
T Consensus 79 -----~~-----~~r~ig~v~Q~~~ 93 (372)
T 1v43_A 79 -----PP-----KDRNISMVFQSYA 93 (372)
T ss_dssp -----CG-----GGGTEEEEEC---
T ss_pred -----Ch-----hhCcEEEEecCcc
Confidence 11 2367999999863
No 20
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.76 E-value=6.2e-19 Score=150.04 Aligned_cols=87 Identities=22% Similarity=0.194 Sum_probs=73.4
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
.++++++...|. +...+|+++||++++||+++|+||||||||||+++|.|++ |++|+| .++|.++...
T Consensus 53 ~i~~~~vs~~y~-----~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I--~i~G~~i~~~---- 121 (306)
T 3nh6_A 53 RIEFENVHFSYA-----DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCI--RIDGQDISQV---- 121 (306)
T ss_dssp CEEEEEEEEESS-----TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEE--EETTEETTSB----
T ss_pred eEEEEEEEEEcC-----CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEE--EECCEEcccC----
Confidence 367777777631 3467999999999999999999999999999999999999 899999 9999999653
Q ss_pred cccChhhHHHhhcceEEecccccccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLSIHLF 174 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f~~lf 174 (176)
...++|++||||+|++ .+|
T Consensus 122 ------~~~~~r~~i~~v~Q~~-~lf 140 (306)
T 3nh6_A 122 ------TQASLRSHIGVVPQDT-VLF 140 (306)
T ss_dssp ------CHHHHHHTEEEECSSC-CCC
T ss_pred ------CHHHHhcceEEEecCC-ccC
Confidence 4556678899999986 444
No 21
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.76 E-value=2e-19 Score=155.71 Aligned_cols=88 Identities=22% Similarity=0.132 Sum_probs=71.1
Q ss_pred cEEEeccceeeeccccccCccc--ceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVD--KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGL 145 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~--~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~ 145 (176)
.+++++++.+. |+... +++++||++++||+++|+||||||||||+|+|+|++ |++|+| .++|+++...
T Consensus 2 ~~l~i~~l~~~------y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I--~i~g~~i~~~- 72 (353)
T 1oxx_K 2 VRIIVKNVSKV------FKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL--YFDDRLVASN- 72 (353)
T ss_dssp CCEEEEEEEEE------EGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEE--EETTEEEEET-
T ss_pred cEEEEEeEEEE------ECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE--EECCEECccc-
Confidence 35778888877 55567 999999999999999999999999999999999999 899999 9999998531
Q ss_pred ccCcccChhhHHHhhcceEEeccccc
Q 030515 146 NRDLSFKAEDRVENIRRIGSVFVLSI 171 (176)
Q Consensus 146 ~~d~~~~~~~~~~~rrrig~V~Q~f~ 171 (176)
........+|+||||||++.
T Consensus 73 ------~~~~~~~~~r~ig~v~Q~~~ 92 (353)
T 1oxx_K 73 ------GKLIVPPEDRKIGMVFQTWA 92 (353)
T ss_dssp ------TEESSCGGGSCEEEEETTSC
T ss_pred ------ccccCChhhCCEEEEeCCCc
Confidence 00001123578999999863
No 22
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.76 E-value=7.7e-19 Score=154.00 Aligned_cols=87 Identities=17% Similarity=0.159 Sum_probs=73.9
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeeccCCcccC
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~~~~~~d 148 (176)
..++++++.+.|. .+...+|+++||++++||+++|+||||||||||+|+|+|+++++|+| .++|+++...
T Consensus 18 ~~i~~~~l~~~y~----~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I--~i~G~~i~~~---- 87 (390)
T 3gd7_A 18 GQMTVKDLTAKYT----EGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEI--QIDGVSWDSI---- 87 (390)
T ss_dssp CCEEEEEEEEESS----SSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEE--EESSCBTTSS----
T ss_pred CeEEEEEEEEEec----CCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEE--EECCEECCcC----
Confidence 4578888888831 15678999999999999999999999999999999999999888999 9999998652
Q ss_pred cccChhhHHHhhcceEEeccccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLSI 171 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f~ 171 (176)
...+.+++||||||++.
T Consensus 88 ------~~~~~rr~ig~v~Q~~~ 104 (390)
T 3gd7_A 88 ------TLEQWRKAFGVIPQKVF 104 (390)
T ss_dssp ------CHHHHHHTEEEESCCCC
T ss_pred ------ChHHHhCCEEEEcCCcc
Confidence 34456778999999873
No 23
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.76 E-value=7.4e-19 Score=146.71 Aligned_cols=83 Identities=25% Similarity=0.223 Sum_probs=70.3
Q ss_pred EEEeccceeeeccccccCc---ccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCc
Q 030515 70 LCQNSTVAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGL 145 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~---~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~ 145 (176)
+++++++.+. |+. ..+++++||++++||+++|+|+||||||||+++|+|++ |++|+| .++|+++...
T Consensus 16 ~l~~~~l~~~------y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I--~~~g~~i~~~- 86 (271)
T 2ixe_A 16 LVKFQDVSFA------YPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV--LLDGEPLVQY- 86 (271)
T ss_dssp CEEEEEEEEC------CTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE--EETTEEGGGB-
T ss_pred eEEEEEEEEE------eCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEE--EECCEEcccC-
Confidence 4677777776 543 67999999999999999999999999999999999999 799999 9999998542
Q ss_pred ccCcccChhhHHHhhcceEEecccc
Q 030515 146 NRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 146 ~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
....++++|+||+|++
T Consensus 87 ---------~~~~~~~~i~~v~Q~~ 102 (271)
T 2ixe_A 87 ---------DHHYLHTQVAAVGQEP 102 (271)
T ss_dssp ---------CHHHHHHHEEEECSSC
T ss_pred ---------CHHHHhccEEEEecCC
Confidence 2234566799999986
No 24
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.76 E-value=4e-19 Score=145.78 Aligned_cols=82 Identities=23% Similarity=0.176 Sum_probs=68.2
Q ss_pred EEeccceeeecccccc-CcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 71 CQNSTVAKSTNILWHK-NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~-~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
++++++++. | +...+++++||++++||+++|+|+||||||||+++|+|++ |++|+| .++|+++...
T Consensus 2 l~~~~l~~~------y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~~~~~---- 69 (243)
T 1mv5_A 2 LSARHVDFA------YDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI--TIDGQPIDNI---- 69 (243)
T ss_dssp EEEEEEEEC------SSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCE--EETTEESTTT----
T ss_pred EEEEEEEEE------eCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE--EECCEEhhhC----
Confidence 456666665 5 5567999999999999999999999999999999999999 799999 9999998542
Q ss_pred cccChhhHHHhhcceEEecccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f 170 (176)
...+.+++|+||+|++
T Consensus 70 ------~~~~~~~~i~~v~q~~ 85 (243)
T 1mv5_A 70 ------SLENWRSQIGFVSQDS 85 (243)
T ss_dssp ------SCSCCTTTCCEECCSS
T ss_pred ------CHHHHHhhEEEEcCCC
Confidence 1122456799999986
No 25
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.76 E-value=1.2e-18 Score=143.63 Aligned_cols=84 Identities=24% Similarity=0.257 Sum_probs=69.6
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhc--c-cCCCeEEEEECCeeccCCcc
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA--L-HWRGKLTYILDGDNCRHGLN 146 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gl--l-p~~G~i~~~ldG~~v~~~~~ 146 (176)
+++++++++. |+...+++++||++++||+++|+|+||||||||+++|+|+ + |++|+| .++|+++...
T Consensus 3 ~l~~~~l~~~------y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I--~~~g~~~~~~-- 72 (250)
T 2d2e_A 3 QLEIRDLWAS------IDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEI--LLDGENILEL-- 72 (250)
T ss_dssp EEEEEEEEEE------ETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEE--EETTEECTTS--
T ss_pred eEEEEeEEEE------ECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEE--EECCEECCCC--
Confidence 5777787777 5666899999999999999999999999999999999998 6 799999 9999998542
Q ss_pred cCcccChhhHHHhhcceEEecccc
Q 030515 147 RDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 147 ~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
...+ ..++.++||+|++
T Consensus 73 -----~~~~--~~~~~i~~v~q~~ 89 (250)
T 2d2e_A 73 -----SPDE--RARKGLFLAFQYP 89 (250)
T ss_dssp -----CHHH--HHHTTBCCCCCCC
T ss_pred -----CHHH--HHhCcEEEeccCC
Confidence 2112 2234699999986
No 26
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.75 E-value=7.3e-19 Score=152.03 Aligned_cols=80 Identities=18% Similarity=0.221 Sum_probs=68.3
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
++++++.+. |+.. +++++||++++||+++|+||||||||||+|+|+|++ |++|+| .++|+++...
T Consensus 2 l~~~~l~~~------y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I--~~~g~~i~~~----- 67 (348)
T 3d31_A 2 IEIESLSRK------WKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI--LLDGKDVTDL----- 67 (348)
T ss_dssp EEEEEEEEE------CSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEE--EETTEECTTS-----
T ss_pred EEEEEEEEE------ECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEE--EECCEECCCC-----
Confidence 556677766 6666 999999999999999999999999999999999999 899999 9999998531
Q ss_pred ccChhhHHHhhcceEEeccccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLSI 171 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f~ 171 (176)
. ..+|+||||||++.
T Consensus 68 --~-----~~~r~ig~v~Q~~~ 82 (348)
T 3d31_A 68 --S-----PEKHDIAFVYQNYS 82 (348)
T ss_dssp --C-----HHHHTCEEECTTCC
T ss_pred --c-----hhhCcEEEEecCcc
Confidence 1 23468999999863
No 27
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.75 E-value=2.4e-18 Score=143.06 Aligned_cols=82 Identities=23% Similarity=0.316 Sum_probs=68.4
Q ss_pred EEEeccceeeeccccccCc---ccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCc
Q 030515 70 LCQNSTVAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGL 145 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~---~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~ 145 (176)
+++++++.+.|+. +. ..+++++||++++||+++|+|+||||||||+++|+|++ |++|+| .++|+++..
T Consensus 2 ~l~~~~l~~~y~~----~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I--~~~g~~~~~-- 73 (266)
T 2yz2_A 2 RIEVVNVSHIFHR----GTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDV--LYDGERKKG-- 73 (266)
T ss_dssp CEEEEEEEEEEST----TSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE--EETTEECCH--
T ss_pred EEEEEEEEEEecC----CCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE--EECCEECch--
Confidence 3667777777420 13 57999999999999999999999999999999999999 799999 999988731
Q ss_pred ccCcccChhhHHHhhcceEEecccc
Q 030515 146 NRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 146 ~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
. ..+++||||+|++
T Consensus 74 --------~---~~~~~i~~v~q~~ 87 (266)
T 2yz2_A 74 --------Y---EIRRNIGIAFQYP 87 (266)
T ss_dssp --------H---HHGGGEEEECSSG
T ss_pred --------H---HhhhhEEEEeccc
Confidence 1 4567899999985
No 28
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.75 E-value=2.4e-18 Score=139.43 Aligned_cols=79 Identities=20% Similarity=0.207 Sum_probs=68.9
Q ss_pred CcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcc
Q 030515 68 NNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLN 146 (176)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~ 146 (176)
..+++++++++. |+. .+++++||++++||+++|+||||||||||+++|+|++ |++|+| .++|+++.
T Consensus 8 ~~~l~~~~ls~~------y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I--~~~g~~~~---- 74 (214)
T 1sgw_A 8 GSKLEIRDLSVG------YDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI--IYNGVPIT---- 74 (214)
T ss_dssp -CEEEEEEEEEE------SSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEE--EETTEEGG----
T ss_pred CceEEEEEEEEE------eCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE--EECCEEhh----
Confidence 356788888877 666 8999999999999999999999999999999999999 799999 99998862
Q ss_pred cCcccChhhHHHhhcceEEecccc
Q 030515 147 RDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 147 ~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
..+++|+||+|++
T Consensus 75 -----------~~~~~i~~v~q~~ 87 (214)
T 1sgw_A 75 -----------KVKGKIFFLPEEI 87 (214)
T ss_dssp -----------GGGGGEEEECSSC
T ss_pred -----------hhcCcEEEEeCCC
Confidence 1356799999986
No 29
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.73 E-value=3.1e-18 Score=142.11 Aligned_cols=83 Identities=24% Similarity=0.186 Sum_probs=69.5
Q ss_pred EEEeccceeeeccccccCc---ccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeeccCCcc
Q 030515 70 LCQNSTVAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN 146 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~---~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~~~~~ 146 (176)
+++++++.+. |+. ..+++++||++++|++++|+||||||||||+++|+|+++.+|+| .++|+++...
T Consensus 17 ~l~i~~l~~~------y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I--~i~g~~i~~~-- 86 (260)
T 2ghi_A 17 NIEFSDVNFS------YPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDI--KIGGKNVNKY-- 86 (260)
T ss_dssp CEEEEEEEEC------CTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEE--EETTEEGGGB--
T ss_pred eEEEEEEEEE------eCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEE--EECCEEhhhc--
Confidence 4778788777 433 46899999999999999999999999999999999999548999 9999998542
Q ss_pred cCcccChhhHHHhhcceEEecccc
Q 030515 147 RDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 147 ~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
...+.+++|+||+|++
T Consensus 87 --------~~~~~~~~i~~v~Q~~ 102 (260)
T 2ghi_A 87 --------NRNSIRSIIGIVPQDT 102 (260)
T ss_dssp --------CHHHHHTTEEEECSSC
T ss_pred --------CHHHHhccEEEEcCCC
Confidence 2334567899999986
No 30
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.73 E-value=4.4e-18 Score=141.64 Aligned_cols=85 Identities=24% Similarity=0.172 Sum_probs=69.3
Q ss_pred cEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhc--c-cCCCeEEEEECCeeccCCc
Q 030515 69 NLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA--L-HWRGKLTYILDGDNCRHGL 145 (176)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gl--l-p~~G~i~~~ldG~~v~~~~ 145 (176)
.+++++++.+. |+...+++++||++++||+++|+||||||||||+++|+|+ + |++|+| .++|+++...
T Consensus 19 ~~l~~~~l~~~------y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I--~~~g~~i~~~- 89 (267)
T 2zu0_C 19 HMLSIKDLHVS------VEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTV--EFKGKDLLAL- 89 (267)
T ss_dssp -CEEEEEEEEE------ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEE--EETTEEGGGS-
T ss_pred ceEEEEeEEEE------ECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEE--EECCEECCcC-
Confidence 35778888777 5667899999999999999999999999999999999998 3 689999 9999998542
Q ss_pred ccCcccChhhHHHhhcceEEecccc
Q 030515 146 NRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 146 ~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
...+ ..+++|+||+|++
T Consensus 90 ------~~~~--~~~~~i~~v~Q~~ 106 (267)
T 2zu0_C 90 ------SPED--RAGEGIFMAFQYP 106 (267)
T ss_dssp ------CHHH--HHHHTEEEECSSC
T ss_pred ------CHHH--HhhCCEEEEccCc
Confidence 2112 1234699999986
No 31
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.71 E-value=1.6e-17 Score=137.25 Aligned_cols=69 Identities=14% Similarity=0.126 Sum_probs=60.4
Q ss_pred cceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceEEecc
Q 030515 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGSVFV 168 (176)
Q Consensus 90 ~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig~V~Q 168 (176)
.+++++||++++||+++|+||||||||||+++|+|++ |+ |+| .++|+++... ...+.+++|+||+|
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i--~~~g~~~~~~----------~~~~~~~~i~~v~q 80 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSI--QFAGQPLEAW----------SATKLALHRAYLSQ 80 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEE--EETTEEGGGS----------CHHHHHHHEEEECS
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEE--EECCEECCcC----------CHHHHhceEEEECC
Confidence 5899999999999999999999999999999999999 79 999 9999998542 23345677999999
Q ss_pred ccc
Q 030515 169 LSI 171 (176)
Q Consensus 169 ~f~ 171 (176)
++.
T Consensus 81 ~~~ 83 (249)
T 2qi9_C 81 QQT 83 (249)
T ss_dssp CCC
T ss_pred CCc
Confidence 863
No 32
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.69 E-value=1.4e-17 Score=136.90 Aligned_cols=77 Identities=19% Similarity=0.135 Sum_probs=64.3
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
++++++++. |+. .++++||++++ |+++|+||||||||||+++|+|++ |++|+| .++|+++...
T Consensus 2 l~~~~l~~~------y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~~~~~----- 65 (240)
T 2onk_A 2 FLKVRAEKR------LGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEV--RLNGADITPL----- 65 (240)
T ss_dssp CEEEEEEEE------ETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEE--EETTEECTTS-----
T ss_pred EEEEEEEEE------eCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EECCEECCcC-----
Confidence 456677766 444 39999999999 999999999999999999999999 899999 9999988531
Q ss_pred ccChhhHHHhhcceEEecccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f 170 (176)
. ..+++||||+|++
T Consensus 66 --~-----~~~~~i~~v~q~~ 79 (240)
T 2onk_A 66 --P-----PERRGIGFVPQDY 79 (240)
T ss_dssp --C-----TTTSCCBCCCSSC
T ss_pred --c-----hhhCcEEEEcCCC
Confidence 1 1246799999986
No 33
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.67 E-value=5.8e-17 Score=132.64 Aligned_cols=61 Identities=18% Similarity=0.254 Sum_probs=54.3
Q ss_pred EEEeccceeeeccccccC--cccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECC
Q 030515 70 LCQNSTVAKSTNILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDG 138 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~--~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG 138 (176)
+++++++.+. |+ ...+++++||++++|++++|+|+||||||||+++|+|++ |++|+| .++|
T Consensus 3 ~l~~~~l~~~------y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I--~~~g 66 (237)
T 2cbz_A 3 SITVRNATFT------WARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV--AIKG 66 (237)
T ss_dssp CEEEEEEEEE------SCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEE--EECS
T ss_pred eEEEEEEEEE------eCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE--EECC
Confidence 4677777777 54 467999999999999999999999999999999999999 799999 8876
No 34
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.67 E-value=8.4e-17 Score=146.42 Aligned_cols=83 Identities=22% Similarity=0.191 Sum_probs=71.3
Q ss_pred EEEeccceeeeccccccCc--ccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcc
Q 030515 70 LCQNSTVAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLN 146 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~--~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~ 146 (176)
.++++++... |+. ..+++++||++++||+++|+||||||||||+++|.|++ |++|+| .+||+++..
T Consensus 341 ~i~~~~v~~~------y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i--~~~g~~~~~--- 409 (582)
T 3b5x_A 341 EVDVKDVTFT------YQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSI--CLDGHDVRD--- 409 (582)
T ss_pred eEEEEEEEEE------cCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEE--EECCEEhhh---
Confidence 4677777766 442 57999999999999999999999999999999999999 899999 999999854
Q ss_pred cCcccChhhHHHhhcceEEecccc
Q 030515 147 RDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 147 ~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
.+..++|++|++|+|++
T Consensus 410 -------~~~~~~~~~i~~v~Q~~ 426 (582)
T 3b5x_A 410 -------YKLTNLRRHFALVSQNV 426 (582)
T ss_pred -------CCHHHHhcCeEEEcCCC
Confidence 24456678899999986
No 35
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.66 E-value=9.6e-17 Score=146.03 Aligned_cols=83 Identities=22% Similarity=0.193 Sum_probs=70.7
Q ss_pred EEEeccceeeeccccccC-c-ccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcc
Q 030515 70 LCQNSTVAKSTNILWHKN-S-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLN 146 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~-~-~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~ 146 (176)
.++++++... |+ . ..+++++||++++||+++|+||||||||||+++|.|++ |++|+| .+||+++...
T Consensus 341 ~i~~~~v~~~------y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i--~~~g~~~~~~-- 410 (582)
T 3b60_A 341 DLEFRNVTFT------YPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHI--LMDGHDLREY-- 410 (582)
T ss_dssp CEEEEEEEEC------SSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEE--EETTEETTTB--
T ss_pred cEEEEEEEEE------cCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeE--EECCEEcccc--
Confidence 3666666666 54 2 67999999999999999999999999999999999999 899999 9999998642
Q ss_pred cCcccChhhHHHhhcceEEecccc
Q 030515 147 RDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 147 ~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
+..++|++|++|+|++
T Consensus 411 --------~~~~~~~~i~~v~Q~~ 426 (582)
T 3b60_A 411 --------TLASLRNQVALVSQNV 426 (582)
T ss_dssp --------CHHHHHHTEEEECSSC
T ss_pred --------CHHHHHhhCeEEccCC
Confidence 3455677899999986
No 36
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.66 E-value=1.4e-16 Score=129.70 Aligned_cols=63 Identities=17% Similarity=0.234 Sum_probs=54.3
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDG 138 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG 138 (176)
+++++++.+.|+ .+...+++++||++++|++++|+||||||||||+++|+|++ |++|+| .++|
T Consensus 6 ~l~~~~l~~~y~----~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g 69 (229)
T 2pze_A 6 EVVMENVTAFWE----EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI--KHSG 69 (229)
T ss_dssp EEEEEEEEECSS----TTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE--EECS
T ss_pred eEEEEEEEEEeC----CCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEE--EECC
Confidence 467777777631 03467999999999999999999999999999999999999 799999 8876
No 37
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.66 E-value=7.3e-17 Score=147.23 Aligned_cols=88 Identities=22% Similarity=0.197 Sum_probs=73.0
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
.+++++++..|+ .+...+++++||++++||+++|+||||||||||+++|.|++ |++|+| .+||+++..
T Consensus 341 ~i~~~~v~~~y~----~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i--~i~g~~i~~----- 409 (587)
T 3qf4_A 341 SVSFENVEFRYF----ENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRV--EVDELDVRT----- 409 (587)
T ss_dssp CEEEEEEEECSS----SSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEE--EESSSBGGG-----
T ss_pred cEEEEEEEEEcC----CCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEE--EECCEEccc-----
Confidence 366666666631 13457999999999999999999999999999999999999 899999 999999965
Q ss_pred cccChhhHHHhhcceEEecccccccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLSIHLF 174 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f~~lf 174 (176)
.+..++|++|++|+|++ .+|
T Consensus 410 -----~~~~~~r~~i~~v~Q~~-~lf 429 (587)
T 3qf4_A 410 -----VKLKDLRGHISAVPQET-VLF 429 (587)
T ss_dssp -----BCHHHHHHHEEEECSSC-CCC
T ss_pred -----CCHHHHHhheEEECCCC-cCc
Confidence 34556778899999986 444
No 38
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.65 E-value=8.4e-17 Score=146.42 Aligned_cols=87 Identities=26% Similarity=0.268 Sum_probs=71.9
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
+++++++..|+ .+...+++++||++++||+++|+||||||||||+++|.|++ |++|+| .+||.++...
T Consensus 340 i~~~~v~~~y~----~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i--~~~g~~~~~~----- 408 (578)
T 4a82_A 340 IDIDHVSFQYN----DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQI--LIDGHNIKDF----- 408 (578)
T ss_dssp EEEEEEEECSC----SSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEE--EETTEEGGGS-----
T ss_pred EEEEEEEEEcC----CCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEE--EECCEEhhhC-----
Confidence 56666666531 12457999999999999999999999999999999999999 899999 9999999652
Q ss_pred ccChhhHHHhhcceEEecccccccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLSIHLF 174 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f~~lf 174 (176)
+..++|++|++|+|++ .+|
T Consensus 409 -----~~~~~r~~i~~v~Q~~-~l~ 427 (578)
T 4a82_A 409 -----LTGSLRNQIGLVQQDN-ILF 427 (578)
T ss_dssp -----CHHHHHHTEEEECSSC-CCC
T ss_pred -----CHHHHhhheEEEeCCC-ccC
Confidence 4556778899999986 444
No 39
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.65 E-value=6e-17 Score=134.86 Aligned_cols=79 Identities=24% Similarity=0.239 Sum_probs=66.1
Q ss_pred EEeccceeeeccccccCc----ccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeeccCCcc
Q 030515 71 CQNSTVAKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN 146 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~----~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~~~~~ 146 (176)
++++++.+. |+. ..+++++||+++ |++++|+|+||||||||+++|+|++|++|+| .++|+++..
T Consensus 2 l~~~~l~~~------y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I--~~~g~~~~~--- 69 (263)
T 2pjz_A 2 IQLKNVGIT------LSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPYSGNI--FINGMEVRK--- 69 (263)
T ss_dssp EEEEEEEEE------EEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSSCCEEEE--EETTEEGGG---
T ss_pred EEEEEEEEE------eCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCCCCCcEE--EECCEECcc---
Confidence 566677766 443 579999999999 9999999999999999999999988889999 999998742
Q ss_pred cCcccChhhHHHhhcceE-Eeccccc
Q 030515 147 RDLSFKAEDRVENIRRIG-SVFVLSI 171 (176)
Q Consensus 147 ~d~~~~~~~~~~~rrrig-~V~Q~f~ 171 (176)
. .. +++|+ ||+|++.
T Consensus 70 -------~--~~-~~~i~~~v~Q~~~ 85 (263)
T 2pjz_A 70 -------I--RN-YIRYSTNLPEAYE 85 (263)
T ss_dssp -------C--SC-CTTEEECCGGGSC
T ss_pred -------h--HH-hhheEEEeCCCCc
Confidence 1 12 46799 9999863
No 40
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.65 E-value=8.4e-17 Score=147.03 Aligned_cols=85 Identities=25% Similarity=0.249 Sum_probs=71.9
Q ss_pred EEeccceeeeccccccC-cccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 71 CQNSTVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~-~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
+++++++.. |+ ...+++++||++++||+++|+||||||||||+++|.|++ |++|+| .+||.++...
T Consensus 355 i~~~~v~~~------y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i--~~~g~~i~~~---- 422 (598)
T 3qf4_B 355 IEFKNVWFS------YDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQI--LVDGIDIRKI---- 422 (598)
T ss_dssp EEEEEEECC------SSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEE--EETTEEGGGS----
T ss_pred EEEEEEEEE------CCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEE--EECCEEhhhC----
Confidence 556666655 54 457999999999999999999999999999999999999 899999 9999999653
Q ss_pred cccChhhHHHhhcceEEecccccccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLSIHLF 174 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f~~lf 174 (176)
+..++|++|++|+|++ .+|
T Consensus 423 ------~~~~~r~~i~~v~Q~~-~lf 441 (598)
T 3qf4_B 423 ------KRSSLRSSIGIVLQDT-ILF 441 (598)
T ss_dssp ------CHHHHHHHEEEECTTC-CCC
T ss_pred ------CHHHHHhceEEEeCCC-ccc
Confidence 4556778899999986 444
No 41
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.65 E-value=1.4e-16 Score=145.30 Aligned_cols=82 Identities=28% Similarity=0.243 Sum_probs=69.9
Q ss_pred EEeccceeeeccccccCc---ccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcc
Q 030515 71 CQNSTVAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLN 146 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~---~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~ 146 (176)
++++++... |+. ..+++++||++++||+++|+||||||||||+++|.|++ |++|+| .+||+++...
T Consensus 342 i~~~~v~~~------y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i--~~~g~~i~~~-- 411 (595)
T 2yl4_A 342 LEFKNVHFA------YPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTI--SLDGHDIRQL-- 411 (595)
T ss_dssp EEEEEEEEE------CSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEE--EETTEETTTB--
T ss_pred EEEEEEEEE------eCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEE--EECCEEhhhC--
Confidence 566676666 432 46999999999999999999999999999999999999 899999 9999998642
Q ss_pred cCcccChhhHHHhhcceEEecccc
Q 030515 147 RDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 147 ~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
+..++|++|++|+|++
T Consensus 412 --------~~~~~~~~i~~v~Q~~ 427 (595)
T 2yl4_A 412 --------NPVWLRSKIGTVSQEP 427 (595)
T ss_dssp --------CHHHHHHSEEEECSSC
T ss_pred --------CHHHHHhceEEEccCC
Confidence 3445677899999986
No 42
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.64 E-value=2.1e-16 Score=130.60 Aligned_cols=57 Identities=21% Similarity=0.143 Sum_probs=51.7
Q ss_pred EEEeccceeeeccccccC-cccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeE
Q 030515 70 LCQNSTVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKL 132 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~-~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i 132 (176)
+++++++.+. |+ ...+++++||++++|++++|+||||||||||+++|+|++ |++|+|
T Consensus 4 ~l~i~~l~~~------y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I 62 (253)
T 2nq2_C 4 ALSVENLGFY------YQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62 (253)
T ss_dssp EEEEEEEEEE------ETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEE
T ss_pred eEEEeeEEEE------eCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 4777777777 55 567999999999999999999999999999999999999 799999
No 43
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.59 E-value=1.1e-15 Score=150.56 Aligned_cols=88 Identities=19% Similarity=0.241 Sum_probs=73.8
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
++++++.-+|.- ..+.++|+++||++++||.++|+|+||||||||+++|.|+. |++|+| .+||.++..
T Consensus 1077 I~f~nVsf~Y~~---~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I--~iDG~di~~------ 1145 (1321)
T 4f4c_A 1077 VIFKNVRFAYPE---RPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEI--FIDGSEIKT------ 1145 (1321)
T ss_dssp EEEEEEEECCTT---SCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEE--EETTEETTT------
T ss_pred EEEEEEEEeCCC---CCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEE--EECCEEhhh------
Confidence 556665555311 12446999999999999999999999999999999999999 899999 999999966
Q ss_pred ccChhhHHHhhcceEEecccccccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLSIHLF 174 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f~~lf 174 (176)
-+...+|++|++|+|++ .||
T Consensus 1146 ----i~~~~lR~~i~~V~Qdp-~LF 1165 (1321)
T 4f4c_A 1146 ----LNPEHTRSQIAIVSQEP-TLF 1165 (1321)
T ss_dssp ----BCHHHHHTTEEEECSSC-CCC
T ss_pred ----CCHHHHHhheEEECCCC-Eee
Confidence 47788899999999997 454
No 44
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.56 E-value=3.5e-15 Score=146.59 Aligned_cols=88 Identities=23% Similarity=0.185 Sum_probs=72.3
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
++++++...|+-. ....+|+++||++++||+++|+|+||||||||+++|.|++ |++|+| .+||.++...
T Consensus 388 i~~~~v~~~y~~~---~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i--~i~g~~i~~~----- 457 (1284)
T 3g5u_A 388 LEFKNIHFSYPSR---KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV--SIDGQDIRTI----- 457 (1284)
T ss_dssp EEEEEEEECCSST---TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEE--EETTEEGGGS-----
T ss_pred EEEEEEEEEcCCC---CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE--EECCEEHHhC-----
Confidence 5666666663210 1347999999999999999999999999999999999999 899999 9999999653
Q ss_pred ccChhhHHHhhcceEEecccccccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLSIHLF 174 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f~~lf 174 (176)
+..++|++||+|+|++ .+|
T Consensus 458 -----~~~~~r~~i~~v~Q~~-~l~ 476 (1284)
T 3g5u_A 458 -----NVRYLREIIGVVSQEP-VLF 476 (1284)
T ss_dssp -----CHHHHHHHEEEECSSC-CCC
T ss_pred -----CHHHHHhheEEEcCCC-ccC
Confidence 5566777899999987 444
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.53 E-value=8.9e-15 Score=144.07 Aligned_cols=74 Identities=26% Similarity=0.288 Sum_probs=67.4
Q ss_pred cccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceEEe
Q 030515 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGSV 166 (176)
Q Consensus 88 ~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig~V 166 (176)
+..+|+|+||++++|+.++|+|+||||||||+++|.|+. |++|+| .+||.++.. .+...+|++||||
T Consensus 430 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I--~idG~~i~~----------~~~~~lr~~i~~v 497 (1321)
T 4f4c_A 430 DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKI--TIDGVDVRD----------INLEFLRKNVAVV 497 (1321)
T ss_dssp TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEE--EETTEETTT----------SCHHHHHHHEEEE
T ss_pred CCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcc--cCCCccchh----------ccHHHHhhccccc
Confidence 467999999999999999999999999999999999999 899999 999999976 3677788899999
Q ss_pred cccccccc
Q 030515 167 FVLSIHLF 174 (176)
Q Consensus 167 ~Q~f~~lf 174 (176)
+|++ .+|
T Consensus 498 ~Q~~-~Lf 504 (1321)
T 4f4c_A 498 SQEP-ALF 504 (1321)
T ss_dssp CSSC-CCC
T ss_pred CCcc-eee
Confidence 9987 454
No 46
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.53 E-value=5e-15 Score=124.89 Aligned_cols=59 Identities=19% Similarity=0.245 Sum_probs=45.3
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDG 138 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG 138 (176)
.++++++.+. ...+++++||++++|++++|+|+||||||||+++|+|++ |++|+| .++|
T Consensus 40 ~l~~~~l~~~--------~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I--~~~g 99 (290)
T 2bbs_A 40 SLSFSNFSLL--------GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI--KHSG 99 (290)
T ss_dssp ------------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEE--ECCS
T ss_pred eEEEEEEEEc--------CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE--EECC
Confidence 3556665543 246899999999999999999999999999999999999 799999 7765
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.53 E-value=6.8e-15 Score=144.59 Aligned_cols=85 Identities=25% Similarity=0.201 Sum_probs=70.7
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCc
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDL 149 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~ 149 (176)
++++++...|... ....+++++||++++||+++|+|+||||||||+++|.|+. |++|+| .+||.++...
T Consensus 1031 i~~~~v~~~y~~~---~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I--~i~g~~i~~~----- 1100 (1284)
T 3g5u_A 1031 VQFSGVVFNYPTR---PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV--FLDGKEIKQL----- 1100 (1284)
T ss_dssp EEEEEEEBCCSCG---GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEE--ESSSSCTTSS-----
T ss_pred EEEEEEEEECCCC---CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE--EECCEEcccC-----
Confidence 5666666553210 1246899999999999999999999999999999999999 899999 9999999653
Q ss_pred ccChhhHHHhhcceEEecccc
Q 030515 150 SFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 150 ~~~~~~~~~~rrrig~V~Q~f 170 (176)
....+|++|++|+|++
T Consensus 1101 -----~~~~~r~~i~~v~Q~~ 1116 (1284)
T 3g5u_A 1101 -----NVQWLRAQLGIVSQEP 1116 (1284)
T ss_dssp -----CHHHHTTSCEEEESSC
T ss_pred -----CHHHHHhceEEECCCC
Confidence 4566788899999987
No 48
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.46 E-value=3.8e-15 Score=117.31 Aligned_cols=84 Identities=80% Similarity=1.250 Sum_probs=66.9
Q ss_pred eccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeeccCCcccCcccChhhHHHh
Q 030515 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN 159 (176)
Q Consensus 80 ~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~ 159 (176)
.|+.|.++.+++.+++++..++|++++|+|+|||||||++++|++.++..|.+++++||+++...+..++++..++..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~~~~~~~~~~~~~~~ 82 (200)
T 3uie_A 3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLNRDLSFKAEDRAEN 82 (200)
T ss_dssp -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHHHHHH
T ss_pred CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHhhcccCcChHHHHHH
Confidence 35677788899999999999999999999999999999999999999878988889999999887777788877766554
Q ss_pred hcce
Q 030515 160 IRRI 163 (176)
Q Consensus 160 rrri 163 (176)
.+++
T Consensus 83 ~~~~ 86 (200)
T 3uie_A 83 IRRV 86 (200)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 49
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.41 E-value=2.1e-14 Score=115.37 Aligned_cols=70 Identities=17% Similarity=0.161 Sum_probs=42.3
Q ss_pred CcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceEEe
Q 030515 87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGSV 166 (176)
Q Consensus 87 ~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig~V 166 (176)
..+..|+++||++++|++++|+||||||||||+++|.|++| |++ .+ |.++... ......+++++|+
T Consensus 8 ~~~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p--G~i--~~-g~~~~~~---------~~~~~~~~~i~~~ 73 (218)
T 1z6g_A 8 HHHSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFP--NYF--YF-SVSCTTR---------KKREKEKEGVDYY 73 (218)
T ss_dssp --------------CCCCEEEECSTTSSHHHHHHHHHHHST--TTE--EE-CCCEECS---------CCCSSCCBTTTBE
T ss_pred cccccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhCC--CcE--EE-eecccCC---------CCCcccccCCeEE
Confidence 34567999999999999999999999999999999999886 999 77 6665431 0001123467888
Q ss_pred cccc
Q 030515 167 FVLS 170 (176)
Q Consensus 167 ~Q~f 170 (176)
||.+
T Consensus 74 ~~~~ 77 (218)
T 1z6g_A 74 FIDK 77 (218)
T ss_dssp ECCH
T ss_pred ECCH
Confidence 8864
No 50
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.40 E-value=2.1e-14 Score=111.02 Aligned_cols=57 Identities=18% Similarity=0.187 Sum_probs=51.8
Q ss_pred cccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeecc
Q 030515 84 WHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (176)
Q Consensus 84 ~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~ 142 (176)
..|+...+++++||++++|++++|+|+||||||||+|+|+|++|.+|++ .++|.++.
T Consensus 15 ~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l~~~G~V--~~~g~~i~ 71 (158)
T 1htw_A 15 LRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNV--KSPTYTLV 71 (158)
T ss_dssp HHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHTTCCSCC--CCCTTTCE
T ss_pred HHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhCCCCCeE--EECCEeee
Confidence 3467778999999999999999999999999999999999998999999 88887764
No 51
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.33 E-value=8.3e-13 Score=126.93 Aligned_cols=63 Identities=17% Similarity=0.177 Sum_probs=54.8
Q ss_pred CcEEEeccceeeeccccccCc--ccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECC
Q 030515 68 NNLCQNSTVAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDG 138 (176)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~--~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG 138 (176)
..+++++++.+. |+. ..+++++||++++|++++|+|+||||||||+++|.|++ |++|+| ++++
T Consensus 669 ~~mL~v~nLs~~------Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I--~~~~ 734 (986)
T 2iw3_A 669 KAIVKVTNMEFQ------YPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV--YTHE 734 (986)
T ss_dssp SEEEEEEEEEEC------CTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEE--EECT
T ss_pred CceEEEEeeEEE------eCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EEcC
Confidence 456788777766 432 57899999999999999999999999999999999999 899999 7764
No 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.30 E-value=2.8e-12 Score=117.79 Aligned_cols=58 Identities=29% Similarity=0.307 Sum_probs=50.3
Q ss_pred CcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeE
Q 030515 68 NNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKL 132 (176)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i 132 (176)
..+++++++.+. |++. .++.+||++++||+++|+||||||||||+++|+|++ |++|+|
T Consensus 355 ~~~l~~~~l~~~------~~~~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I 413 (607)
T 3bk7_A 355 ETLVEYPRLVKD------YGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV 413 (607)
T ss_dssp CEEEEECCEEEE------CSSC-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCC
T ss_pred ceEEEEeceEEE------ecce-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence 456778777766 4543 588999999999999999999999999999999999 799998
No 53
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.30 E-value=6.5e-13 Score=119.34 Aligned_cols=73 Identities=15% Similarity=0.203 Sum_probs=61.5
Q ss_pred cCcccceeccee-EeeCCeEEEEEcCCCCcHHHHHHH--HHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhc
Q 030515 86 KNSVDKRDRQQL-LQQKGCVIWITGLSGSGKSTLACA--LSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIR 161 (176)
Q Consensus 86 ~~~~~~l~~isl-~v~~Geiv~I~G~SGSGKSTLlr~--L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rr 161 (176)
.+.+.+|++++| .+++|++++|+|+||||||||+++ ++|++ |..|.+ +++|++.. .+..+.++
T Consensus 22 ~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i--~v~g~~~~-----------~~~~~~~~ 88 (525)
T 1tf7_A 22 RTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGV--FVTFEETP-----------QDIIKNAR 88 (525)
T ss_dssp CCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEE--EEESSSCH-----------HHHHHHHG
T ss_pred cCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEE--EEEEeCCH-----------HHHHHHHH
Confidence 456789999999 999999999999999999999999 78998 589999 88887631 34445567
Q ss_pred ceEEeccccc
Q 030515 162 RIGSVFVLSI 171 (176)
Q Consensus 162 rig~V~Q~f~ 171 (176)
++||++|++.
T Consensus 89 ~~g~~~q~~~ 98 (525)
T 1tf7_A 89 SFGWDLAKLV 98 (525)
T ss_dssp GGTCCHHHHH
T ss_pred HcCCChHHhh
Confidence 7999999764
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.29 E-value=3.7e-12 Score=115.32 Aligned_cols=59 Identities=27% Similarity=0.289 Sum_probs=50.5
Q ss_pred CCcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeE
Q 030515 67 GNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKL 132 (176)
Q Consensus 67 g~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i 132 (176)
+..+++++++.+. |++. .++.+||++++||+++|+|+||||||||+++|+|++ |++|+|
T Consensus 284 ~~~~l~~~~l~~~------~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i 343 (538)
T 1yqt_A 284 RETLVTYPRLVKD------YGSF-RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKI 343 (538)
T ss_dssp CCEEEEECCEEEE------ETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCC
T ss_pred CCeEEEEeeEEEE------ECCE-EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence 3456788887766 4443 588899999999999999999999999999999999 789998
No 55
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.23 E-value=1.6e-13 Score=117.52 Aligned_cols=87 Identities=18% Similarity=0.124 Sum_probs=65.7
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccC
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRD 148 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d 148 (176)
+++++++.+. |+...+++++||++++|++++|+|+||||||||+++|.+++ |+.|++ .+.+.++.....
T Consensus 29 ~ie~~~~~~~------~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v--~i~~~d~~~~~~-- 98 (337)
T 2qm8_A 29 LAESRRADHR------AAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKV--AVLAVDPSSTRT-- 98 (337)
T ss_dssp HHTCSSHHHH------HHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE--EEEEECGGGGSS--
T ss_pred HHeeCCcccc------cChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEE--EEEEEcCccccc--
Confidence 3445555544 55568899999999999999999999999999999999999 789999 777777643210
Q ss_pred cccChhhHHHhhcceEEecccc
Q 030515 149 LSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 149 ~~~~~~~~~~~rrrig~V~Q~f 170 (176)
.......++++++++|++
T Consensus 99 ----~~~~~~~~~~i~~v~q~~ 116 (337)
T 2qm8_A 99 ----GGSILGDKTRMARLAIDR 116 (337)
T ss_dssp ----CCCSSCCGGGSTTGGGCT
T ss_pred ----ccchHHHhhhheeeccCc
Confidence 001112346799999976
No 56
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.23 E-value=2.7e-12 Score=116.28 Aligned_cols=46 Identities=26% Similarity=0.140 Sum_probs=42.0
Q ss_pred cCcc-cceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeE
Q 030515 86 KNSV-DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKL 132 (176)
Q Consensus 86 ~~~~-~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i 132 (176)
|+.. .+++++| ++++||+++|+|+||||||||+++|+|++ |++|++
T Consensus 31 yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~ 78 (538)
T 1yqt_A 31 YGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGD 78 (538)
T ss_dssp CSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred ECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcc
Confidence 6655 4899999 99999999999999999999999999999 888984
No 57
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.22 E-value=7.9e-12 Score=105.68 Aligned_cols=72 Identities=21% Similarity=0.181 Sum_probs=55.8
Q ss_pred ceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccC-hhhHHHh--hcceEEe
Q 030515 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFK-AEDRVEN--IRRIGSV 166 (176)
Q Consensus 91 ~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~-~~~~~~~--rrrig~V 166 (176)
.++++||++++|++++|+|+|||||||+++.|++++ |+.|++ .++|.++... . .+++... +++|+++
T Consensus 89 ~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V--~l~g~d~~r~-------~a~~ql~~~~~~~~i~~v 159 (302)
T 3b9q_A 89 SKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKV--LMAAGDTFRA-------AASDQLEIWAERTGCEIV 159 (302)
T ss_dssp CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE--EEECCCCSCH-------HHHHHHHHHHHHHTCEEE
T ss_pred cccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeE--EEEeecccch-------hHHHHHHHHHHhcCceEE
Confidence 346789999999999999999999999999999999 789999 8888876431 1 1223333 3469999
Q ss_pred ccccc
Q 030515 167 FVLSI 171 (176)
Q Consensus 167 ~Q~f~ 171 (176)
+|...
T Consensus 160 ~q~~~ 164 (302)
T 3b9q_A 160 VAEGD 164 (302)
T ss_dssp CCC--
T ss_pred EecCC
Confidence 99763
No 58
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.22 E-value=4.6e-12 Score=112.25 Aligned_cols=78 Identities=15% Similarity=0.023 Sum_probs=60.3
Q ss_pred cccC-cccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCe---eccCCcccCcccChhhHHH
Q 030515 84 WHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGD---NCRHGLNRDLSFKAEDRVE 158 (176)
Q Consensus 84 ~~~~-~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~---~v~~~~~~d~~~~~~~~~~ 158 (176)
..|+ ...+++++ |++.+|++++|+|+||||||||+++|+|+. |+.|.+ .++|+ ++..... ...+...
T Consensus 139 ~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i--~~~G~r~~ev~~~~~-----~~~~~~~ 210 (438)
T 2dpy_A 139 HVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV--GLIGERGREVKDFIE-----NILGPDG 210 (438)
T ss_dssp SBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEE--EEESCCHHHHHHHHH-----TTTHHHH
T ss_pred eecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEE--EEeceecHHHHHHHH-----hhccccc
Confidence 3355 56899999 999999999999999999999999999999 788988 88887 4432100 0012334
Q ss_pred hhcceEEeccc
Q 030515 159 NIRRIGSVFVL 169 (176)
Q Consensus 159 ~rrrig~V~Q~ 169 (176)
+++.+++|+|.
T Consensus 211 l~r~i~~v~q~ 221 (438)
T 2dpy_A 211 RARSVVIAAPA 221 (438)
T ss_dssp HHTEEEEEECT
T ss_pred cCceEEEEECC
Confidence 56789999995
No 59
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.21 E-value=5.2e-12 Score=116.04 Aligned_cols=51 Identities=22% Similarity=0.156 Sum_probs=44.6
Q ss_pred ccccccCcc-cceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeE
Q 030515 81 NILWHKNSV-DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKL 132 (176)
Q Consensus 81 ~~~~~~~~~-~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i 132 (176)
++.+.|+.. .+++++| ++++||+++|+|+||||||||+++|+|++ |+.|++
T Consensus 96 ~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~ 148 (607)
T 3bk7_A 96 DCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCED 148 (607)
T ss_dssp SEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTT
T ss_pred CeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCcc
Confidence 344447765 4899999 99999999999999999999999999999 899984
No 60
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.18 E-value=2.5e-11 Score=110.00 Aligned_cols=65 Identities=18% Similarity=0.162 Sum_probs=53.4
Q ss_pred CcEEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeec
Q 030515 68 NNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNC 141 (176)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v 141 (176)
...++++++.+. |+.. .++..||++++||+++|+|+||||||||+++|+|++ |++|+| .+++..+
T Consensus 267 ~~~l~~~~l~~~------~~~~-~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i--~~~~~~i 332 (538)
T 3ozx_A 267 KTKMKWTKIIKK------LGDF-QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSV--TPEKQIL 332 (538)
T ss_dssp CEEEEECCEEEE------ETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCE--ESSCCCE
T ss_pred cceEEEcceEEE------ECCE-EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE--EECCeee
Confidence 345777777766 4443 467779999999999999999999999999999999 899999 7766544
No 61
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.17 E-value=4.4e-12 Score=100.32 Aligned_cols=64 Identities=17% Similarity=0.213 Sum_probs=39.3
Q ss_pred cceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceEEeccc
Q 030515 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGSVFVL 169 (176)
Q Consensus 90 ~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig~V~Q~ 169 (176)
.++.+ .++++|++++|+||||||||||+++|+|+++ .+ .+++..... .... ..++.++|+||+
T Consensus 10 ~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~---~i--~~~~~~~~~--------~~~~--~~~~~i~~~~q~ 72 (207)
T 1znw_A 10 PTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP---NL--HFSVSATTR--------APRP--GEVDGVDYHFID 72 (207)
T ss_dssp -----------CCCEEEEECSTTSSHHHHHHHHHHHST---TC--EECCCEESS--------CCCT--TCCBTTTBEECC
T ss_pred cCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC---ce--EEccccccc--------CCcc--cccCCCeeEecC
Confidence 44555 5899999999999999999999999999986 34 455432221 0001 123568899986
Q ss_pred c
Q 030515 170 S 170 (176)
Q Consensus 170 f 170 (176)
.
T Consensus 73 ~ 73 (207)
T 1znw_A 73 P 73 (207)
T ss_dssp H
T ss_pred H
Confidence 4
No 62
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.16 E-value=8.4e-12 Score=101.21 Aligned_cols=41 Identities=20% Similarity=0.189 Sum_probs=26.3
Q ss_pred cCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 86 ~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
.+.+.+++++||++++|++++|+|+|||||||++++|.+++
T Consensus 9 ~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 9 SGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp --------------CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45668999999999999999999999999999999999976
No 63
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.14 E-value=3.4e-11 Score=104.42 Aligned_cols=70 Identities=23% Similarity=0.179 Sum_probs=55.6
Q ss_pred ecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccCh-hhHHHh--hcceEEecc
Q 030515 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKA-EDRVEN--IRRIGSVFV 168 (176)
Q Consensus 93 ~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~-~~~~~~--rrrig~V~Q 168 (176)
+.+||++++|++++|+|+|||||||+++.|++++ |+.|++ .++|.++... .. +++... +++|++++|
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V--~l~g~D~~r~-------~a~eql~~~~~r~~i~~v~q 218 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKV--LMAAGDTFRA-------AASDQLEIWAERTGCEIVVA 218 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE--EEECCCCSCH-------HHHHHHHHHHHHHTCEEECC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEE--EEeccccccc-------chhHHHHHHHHhcCeEEEEe
Confidence 4688999999999999999999999999999999 789999 8888876431 11 223332 346999999
Q ss_pred ccc
Q 030515 169 LSI 171 (176)
Q Consensus 169 ~f~ 171 (176)
...
T Consensus 219 ~~~ 221 (359)
T 2og2_A 219 EGD 221 (359)
T ss_dssp SSS
T ss_pred ccc
Confidence 763
No 64
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.14 E-value=3.2e-11 Score=108.70 Aligned_cols=71 Identities=15% Similarity=0.186 Sum_probs=54.8
Q ss_pred eecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHH--hhcceEEecc
Q 030515 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE--NIRRIGSVFV 168 (176)
Q Consensus 92 l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~--~rrrig~V~Q 168 (176)
.+++||++++|++++|+|+||||||||+++|++++ +..|+| .+++.++... .....+.. .+++|+|++|
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V--~l~g~D~~r~------aa~eQL~~~~~r~~I~vV~Q 354 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSV--MLAAGDTFRA------AAVEQLQVWGQRNNIPVIAQ 354 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE--EEECCCTTCH------HHHHHHHHHHHHHTCCEECC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeE--EEecCcccch------hhHHHHHHHHHhcCceEEec
Confidence 46899999999999999999999999999999999 788999 7766555321 00112222 3567999999
Q ss_pred cc
Q 030515 169 LS 170 (176)
Q Consensus 169 ~f 170 (176)
..
T Consensus 355 ~~ 356 (503)
T 2yhs_A 355 HT 356 (503)
T ss_dssp ST
T ss_pred cc
Confidence 75
No 65
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.13 E-value=1.1e-12 Score=105.50 Aligned_cols=66 Identities=18% Similarity=0.081 Sum_probs=48.3
Q ss_pred cCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceEE
Q 030515 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGS 165 (176)
Q Consensus 86 ~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig~ 165 (176)
|++..+++++ ++|++++|+||||||||||+++|+|+-|++|+| .. .++.. . ..+.+++|||
T Consensus 10 ~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl~p~~G~I--~~--~~~~~--------~---~~~~~~~ig~ 70 (208)
T 3b85_A 10 LGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQALQSKQV--SR--IILTR--------P---AVEAGEKLGF 70 (208)
T ss_dssp HHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHHHHHTTSC--SE--EEEEE--------C---SCCTTCCCCS
T ss_pred HhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcCCCcCCee--ee--EEecC--------C---chhhhcceEE
Confidence 5667788885 899999999999999999999999994489988 32 22211 0 0123467999
Q ss_pred ecccc
Q 030515 166 VFVLS 170 (176)
Q Consensus 166 V~Q~f 170 (176)
|+|++
T Consensus 71 v~q~~ 75 (208)
T 3b85_A 71 LPGTL 75 (208)
T ss_dssp SCC--
T ss_pred ecCCH
Confidence 99975
No 66
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.13 E-value=1.3e-11 Score=95.98 Aligned_cols=43 Identities=26% Similarity=0.325 Sum_probs=33.9
Q ss_pred eeEeeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeeccC
Q 030515 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH 143 (176)
Q Consensus 96 sl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~~ 143 (176)
|+++.+|++++|+||||||||||+++|.+++| .+ .+++..+..
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~---~~--~~~~~~~~~ 43 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA---EI--KISISHTTR 43 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS---SE--EECCCEECS
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC---Ce--EEeceeccC
Confidence 56788999999999999999999999999876 45 777766654
No 67
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.11 E-value=2.3e-11 Score=109.28 Aligned_cols=52 Identities=19% Similarity=0.067 Sum_probs=48.4
Q ss_pred ccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccC
Q 030515 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH 143 (176)
Q Consensus 89 ~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~ 143 (176)
..+++++||++++ ++++|+||||||||||+++|+|++ |++|+| .++|+++..
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I--~~~g~~~~~ 69 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLL--NFRNTTEAG 69 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTC--CCCCTTSCS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEE--EECCEEccc
Confidence 3679999999999 999999999999999999999999 899999 999988864
No 68
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.10 E-value=2.5e-11 Score=111.96 Aligned_cols=45 Identities=31% Similarity=0.330 Sum_probs=33.4
Q ss_pred cccceecceeEeeCCeEEEEEcCCCCcHHHHH---------------------HHHHhcc-cCCCeE
Q 030515 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLA---------------------CALSQAL-HWRGKL 132 (176)
Q Consensus 88 ~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLl---------------------r~L~gll-p~~G~i 132 (176)
...+|+++||++++||+++|+||||||||||+ +++.++. |+.|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i 96 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAI 96 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEE
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccce
Confidence 34689999999999999999999999999998 8888887 675544
No 69
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.09 E-value=9.8e-12 Score=110.83 Aligned_cols=44 Identities=20% Similarity=0.331 Sum_probs=41.0
Q ss_pred ecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCC-e-EEEEECC
Q 030515 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRG-K-LTYILDG 138 (176)
Q Consensus 93 ~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G-~-i~~~ldG 138 (176)
.++||++++|++++|+|+||||||||+|+|+|++ |+.| + + ++||
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI--~vdg 175 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPL--YINL 175 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCE--EEEC
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeE--EEcC
Confidence 3789999999999999999999999999999999 7999 8 8 7876
No 70
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.06 E-value=1.3e-11 Score=106.51 Aligned_cols=46 Identities=28% Similarity=0.245 Sum_probs=42.5
Q ss_pred eecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCe
Q 030515 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGD 139 (176)
Q Consensus 92 l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~ 139 (176)
++++||.+++|++++|+|+||||||||+++|.+++ |+.|.+ .++|.
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I--~ie~~ 211 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLI--TIEDV 211 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEE--EEESS
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEE--EECCc
Confidence 48999999999999999999999999999999999 689999 77763
No 71
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.05 E-value=1.4e-10 Score=100.00 Aligned_cols=68 Identities=25% Similarity=0.221 Sum_probs=55.6
Q ss_pred cceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhccc---------------------------------------CCC
Q 030515 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH---------------------------------------WRG 130 (176)
Q Consensus 90 ~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp---------------------------------------~~G 130 (176)
..+++++|++++| +++|+|+||||||||+++|.++++ ..|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 6789999999999 999999999999999999987763 134
Q ss_pred eEEEEECCeeccCCcccCcccChhhHHHhhcc-eEEecccc
Q 030515 131 KLTYILDGDNCRHGLNRDLSFKAEDRVENIRR-IGSVFVLS 170 (176)
Q Consensus 131 ~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrr-ig~V~Q~f 170 (176)
++ .++|+.+.. .+..++.+. +++++|+.
T Consensus 128 ~i--~ing~~~~~----------~~~~~~~~~~i~~~~q~~ 156 (415)
T 4aby_A 128 AA--RLSGEVVSV----------RELQEWAQGRLTIHWQHS 156 (415)
T ss_dssp EE--EETTEEECH----------HHHHHHHTTTEEEETTTC
T ss_pred EE--EECCEECCH----------HHHHHHHhhceEEecCcc
Confidence 45 889988843 456666665 89999986
No 72
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.04 E-value=1.9e-10 Score=97.30 Aligned_cols=62 Identities=19% Similarity=0.226 Sum_probs=49.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHh--hcceEEecccc
Q 030515 101 KGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN--IRRIGSVFVLS 170 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~--rrrig~V~Q~f 170 (176)
+|++++|+|||||||||++++|++++ |+.|++ .++|.++... + ..+.+... ++++++|+|.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V--~l~g~D~~r~-----~-a~~ql~~~~~~~~i~~v~q~~ 165 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKV--MFCAGDTFRA-----A-GGTQLSEWGKRLSIPVIQGPE 165 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCE--EEECCCCSST-----T-TTHHHHHHHHHHTCCEECCCT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEE--EEEeecCCCh-----h-HHHHHHHHHHhcCceEEEeCC
Confidence 79999999999999999999999999 889999 8888887542 0 11333333 34699999975
No 73
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.04 E-value=2.6e-11 Score=103.08 Aligned_cols=44 Identities=20% Similarity=0.149 Sum_probs=41.3
Q ss_pred cCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeE
Q 030515 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKL 132 (176)
Q Consensus 86 ~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i 132 (176)
|+ ..+|+++||++++|++++|+||||||||||+++|.|++ +|+|
T Consensus 111 y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~--~G~I 154 (305)
T 2v9p_A 111 TF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL--GGSV 154 (305)
T ss_dssp HH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH--TCEE
T ss_pred cC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc--CceE
Confidence 44 57899999999999999999999999999999999998 8998
No 74
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=99.03 E-value=3.2e-11 Score=109.77 Aligned_cols=72 Identities=43% Similarity=0.615 Sum_probs=59.5
Q ss_pred EeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCC-eEEEEECCeeccCCcccCcccChhhHHHhhcceEEecccc
Q 030515 98 LQQKGCVIWITGLSGSGKSTLACALSQAL-HWRG-KLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 98 ~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G-~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
.+++|++++|+|+||||||||+++|++.+ |..| .+ +.+||+++...+.++++++..++.+.++++++|+|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i-~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l 438 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCV-TLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI 438 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCE-EEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceE-EEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999 7776 55 2589998865456677888777777777889998864
No 75
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.01 E-value=7.8e-11 Score=97.50 Aligned_cols=50 Identities=28% Similarity=0.244 Sum_probs=44.7
Q ss_pred cceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cC-CCeEEEEECCeeccC
Q 030515 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HW-RGKLTYILDGDNCRH 143 (176)
Q Consensus 90 ~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~-~G~i~~~ldG~~v~~ 143 (176)
.+++++| +++|++++|+|||||||||++++|.|++ |+ +|+| .++|+++..
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I--~~~g~~i~~ 66 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHI--ITIEDPIEY 66 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEE--EEEESSCCS
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEE--EEcCCccee
Confidence 5788888 8999999999999999999999999999 66 8999 888877654
No 76
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.01 E-value=2.3e-10 Score=88.11 Aligned_cols=39 Identities=26% Similarity=0.219 Sum_probs=33.4
Q ss_pred cceeEeeCCeEEEEEcCCCCcHHHHHH------------HHHhcc-cCCCeE
Q 030515 94 RQQLLQQKGCVIWITGLSGSGKSTLAC------------ALSQAL-HWRGKL 132 (176)
Q Consensus 94 ~isl~v~~Geiv~I~G~SGSGKSTLlr------------~L~gll-p~~G~i 132 (176)
++||++++||+++|+|+||||||||++ .+.+++ +++|.+
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~ 52 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQ 52 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCG
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccch
Confidence 589999999999999999999999999 666666 455554
No 77
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.00 E-value=8.5e-11 Score=101.22 Aligned_cols=61 Identities=26% Similarity=0.110 Sum_probs=51.4
Q ss_pred EEeccceeeeccccccC-cccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCee
Q 030515 71 CQNSTVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDN 140 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~-~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~ 140 (176)
++.+++.+. |+ ...+++++ |++.+|++++|+|+||||||||+++|+|++ |+.|.+ .+.|++
T Consensus 46 i~~~~l~~~------~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i--~~~G~~ 108 (347)
T 2obl_A 46 LLRQVIDQP------FILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVL--ALIGER 108 (347)
T ss_dssp TTCCCCCSE------ECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEE--EEESCC
T ss_pred eeeccccee------cCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEE--EEeccc
Confidence 445566655 44 56899999 999999999999999999999999999999 788877 777765
No 78
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.96 E-value=5.5e-10 Score=102.70 Aligned_cols=43 Identities=28% Similarity=0.356 Sum_probs=39.2
Q ss_pred ccceecceeEeeCC-----eEEEEEcCCCCcHHHHHHHHHhcc-cCCCe
Q 030515 89 VDKRDRQQLLQQKG-----CVIWITGLSGSGKSTLACALSQAL-HWRGK 131 (176)
Q Consensus 89 ~~~l~~isl~v~~G-----eiv~I~G~SGSGKSTLlr~L~gll-p~~G~ 131 (176)
..+++++||++.+| |+++|+|+||||||||+++|+|++ |++|+
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~ 408 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQ 408 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCC
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Confidence 35788999999988 789999999999999999999999 78886
No 79
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.95 E-value=7.2e-11 Score=99.15 Aligned_cols=62 Identities=24% Similarity=0.141 Sum_probs=40.8
Q ss_pred eEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEE---CCeeccCCcccCcccChhhHHHhh-cceEEeccccc
Q 030515 97 LLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYIL---DGDNCRHGLNRDLSFKAEDRVENI-RRIGSVFVLSI 171 (176)
Q Consensus 97 l~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~l---dG~~v~~~~~~d~~~~~~~~~~~r-rrig~V~Q~f~ 171 (176)
|++.+|++++|+|+||||||||+++|.|++ |+.|++ .+ +|+++... . . ..+ +++++|+|.+.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i--~~~~~~g~~~t~~-------~--~--~~~~~~~g~v~q~p~ 230 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEV--SEKLQRGRHTTTT-------A--Q--LLKFDFGGYVVDTPG 230 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC---------------CCCS-------C--C--EEECTTSCEEESSCS
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccce--ecccCCCCCceee-------e--E--EEEcCCCCEEEECcC
Confidence 456789999999999999999999999999 899999 88 88887542 1 1 111 35899999763
No 80
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.94 E-value=7.2e-11 Score=93.47 Aligned_cols=54 Identities=31% Similarity=0.366 Sum_probs=44.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceEEecccc
Q 030515 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 102 Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
|++++|+|+||||||||+++|+++++++| + .++|.++.. ....++++|+++|.+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~~~G-i--~~~g~~~~~------------~~~~~~~ig~~~~~~ 54 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLKSSG-V--PVDGFYTEE------------VRQGGRRIGFDVVTL 54 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHHHTT-C--CCEEEECCE------------EETTSSEEEEEEEET
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcccCC-E--EEcCEecch------------hHhhhceEEEEEEec
Confidence 68899999999999999999999988789 7 888876632 112457799999974
No 81
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.94 E-value=1e-10 Score=103.11 Aligned_cols=52 Identities=23% Similarity=0.173 Sum_probs=45.4
Q ss_pred cccceecceeEeeCCe--------------------EEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeec
Q 030515 88 SVDKRDRQQLLQQKGC--------------------VIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNC 141 (176)
Q Consensus 88 ~~~~l~~isl~v~~Ge--------------------iv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v 141 (176)
...+++++||++++|+ +++|+|+||||||||+++|.|++ |+.|.+ .++|.++
T Consensus 35 ~~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI--~~~g~~~ 107 (413)
T 1tq4_A 35 SQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAA--KTGVVEV 107 (413)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSC--CCCC---
T ss_pred CHHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceE--EECCeec
Confidence 3468999999999999 99999999999999999999999 799999 7777654
No 82
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.93 E-value=1.6e-10 Score=93.27 Aligned_cols=58 Identities=22% Similarity=0.213 Sum_probs=40.5
Q ss_pred eEeeCCeEEEEEcCCCCcHHHHHHHHHhccc---CCCeEEEEECCeeccCCcccCcccChhhHHHhhcceEEecccc
Q 030515 97 LLQQKGCVIWITGLSGSGKSTLACALSQALH---WRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 97 l~v~~Geiv~I~G~SGSGKSTLlr~L~gllp---~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
-..++|++++|+||||||||||+++|.+++| ..|.+ .+.++..+.. .++.++|+||..
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v--~~ttr~~~~~--------------e~~gi~y~fq~~ 71 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSV--SHTTRQPRPG--------------EVHGEHYFFVNH 71 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECC--CEECSCCCTT--------------CCBTTTBEECCH
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEE--EecCCCCCcc--------------cccCceEEECCH
Confidence 3579999999999999999999999999985 45666 5555443211 124578888864
No 83
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.93 E-value=6.2e-10 Score=85.68 Aligned_cols=42 Identities=31% Similarity=0.373 Sum_probs=37.3
Q ss_pred EeeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeecc
Q 030515 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (176)
Q Consensus 98 ~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~ 142 (176)
.+++|++++|+|+|||||||++++|.+. +..|.+ .++|+++.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~-~~~g~i--~i~~d~~~ 46 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL-PGVPKV--HFHSDDLW 46 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC-SSSCEE--EECTTHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc-cCCCeE--EEcccchh
Confidence 4689999999999999999999999998 778888 89988764
No 84
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.93 E-value=3.9e-10 Score=103.68 Aligned_cols=61 Identities=21% Similarity=0.216 Sum_probs=46.5
Q ss_pred EEeccceeee--ccccccCccc-ceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeE
Q 030515 71 CQNSTVAKST--NILWHKNSVD-KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKL 132 (176)
Q Consensus 71 ~~~~~~~~~~--~~~~~~~~~~-~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i 132 (176)
+++.++.+.+ ++...|+... .+++++ .+++||+++|+||||||||||+++|+|++ |+.|++
T Consensus 70 i~i~nl~~~~~~~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i 134 (608)
T 3j16_B 70 IQIINLPTNLEAHVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134 (608)
T ss_dssp EEEEEESSSSSTTEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred eEEecCChhhcCCeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence 4444444332 3455576543 566665 58999999999999999999999999999 899987
No 85
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.93 E-value=4.3e-10 Score=89.52 Aligned_cols=59 Identities=22% Similarity=0.232 Sum_probs=42.6
Q ss_pred EeeCCeEEEEEcCCCCcHHHHHHHHH--hcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceEEeccc
Q 030515 98 LQQKGCVIWITGLSGSGKSTLACALS--QAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGSVFVL 169 (176)
Q Consensus 98 ~v~~Geiv~I~G~SGSGKSTLlr~L~--gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig~V~Q~ 169 (176)
.+++|++++|+||||||||||+++|+ +++ +..|.+ +++++.. .....+..+++++++|.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~--~~~~~~~-----------~~~~~~~~~~~g~~~~~ 87 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGV--FVTLEER-----------ARDLRREMASFGWDFEK 87 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEE--EEESSSC-----------HHHHHHHHHTTTCCHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEE--EEEccCC-----------HHHHHHHHHHcCCChHH
Confidence 58999999999999999999999999 664 455555 5554432 13333444567777775
No 86
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.93 E-value=1.2e-10 Score=99.34 Aligned_cols=48 Identities=15% Similarity=0.128 Sum_probs=44.7
Q ss_pred ceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCee
Q 030515 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDN 140 (176)
Q Consensus 91 ~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~ 140 (176)
+++++||.+++|++++|+|+||||||||+++|.|++ |+.|.+ .++|.+
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i--~i~~~~ 208 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERII--SIEDTE 208 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEE--EEESSC
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEE--EECCee
Confidence 789999999999999999999999999999999999 789999 887754
No 87
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.91 E-value=4.2e-10 Score=93.54 Aligned_cols=52 Identities=27% Similarity=0.292 Sum_probs=31.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceEEecccc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
.++|+|+||||||||+++|.|++ |++|++ .++|+++... ..++.+++++|..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i--~~~g~~i~~~-------------~~~~~i~~v~q~~ 56 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASS--WNREEKIPKT-------------VEIKAIGHVIEEG 56 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCC-------------CSCCEEEESCC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCcc--ccCCcccCcc-------------eeeeeeEEEeecC
Confidence 47899999999999999999998 899999 8999877421 1235699999975
No 88
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.90 E-value=8.4e-10 Score=94.37 Aligned_cols=64 Identities=23% Similarity=0.285 Sum_probs=49.7
Q ss_pred EeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccCh-hhHHHhhcc--eEEecccc
Q 030515 98 LQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKA-EDRVENIRR--IGSVFVLS 170 (176)
Q Consensus 98 ~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~-~~~~~~rrr--ig~V~Q~f 170 (176)
..++|++++|+|||||||||++++|++++ |+.|++ .+.|.++... .. +.+...+++ +.+++|.+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V--~l~g~D~~r~-------~a~eql~~~~~~~gv~~v~q~~ 192 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSV--VIAASDTFRA-------GAIEQLEEHAKRIGVKVIKHSY 192 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE--EEEEECCSST-------THHHHHHHHHHHTTCEEECCCT
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEE--EEEeeccccc-------chHHHHHHHHHHcCceEEeccc
Confidence 34789999999999999999999999999 799999 8888887542 22 233344444 55888864
No 89
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.88 E-value=6.8e-10 Score=87.02 Aligned_cols=41 Identities=24% Similarity=0.394 Sum_probs=33.8
Q ss_pred eEeeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeecc
Q 030515 97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (176)
Q Consensus 97 l~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~ 142 (176)
+..++|++++|+|+|||||||++++|++.+ |.+ .++++++.
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~---g~~--~i~~d~~~ 64 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET---GLE--FAEADAFH 64 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH---CCE--EEEGGGGS
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCe--EEcccccc
Confidence 456789999999999999999999999977 778 88888774
No 90
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.87 E-value=4e-11 Score=97.85 Aligned_cols=70 Identities=16% Similarity=0.029 Sum_probs=41.5
Q ss_pred eeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceEEecccc
Q 030515 96 QLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 96 sl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
++++.+ ++++|+||||||||||+++|++++ |++|+| .++|.++........ ........++++++|+|.+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i--~~~g~~~~~~~~~~~--~~~~~~~~~~~i~~v~~~~ 92 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLL--HFRNTTEAGATSGSR--DKGLHGKLKAGVCYSMLDT 92 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC----------------------CGGGBCSSEEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeE--EECCEEcccCCcccc--ccchhhHhhcCcEEEEEee
Confidence 455566 889999999999999999999999 899999 999988743210000 0001111245699999853
No 91
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.86 E-value=1.5e-09 Score=92.12 Aligned_cols=32 Identities=31% Similarity=0.422 Sum_probs=30.1
Q ss_pred eeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCC
Q 030515 99 QQKGCVIWITGLSGSGKSTLACALSQAL-HWRG 130 (176)
Q Consensus 99 v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G 130 (176)
+++|++++|+|+||||||||+++|.+++ |..|
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G 119 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDH 119 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCC
Confidence 8999999999999999999999999999 6666
No 92
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.86 E-value=2e-10 Score=96.62 Aligned_cols=60 Identities=25% Similarity=0.154 Sum_probs=49.1
Q ss_pred EEeccceeeeccccccCcccceecceeEe-------------------eCCeEEEEEcCCCCcHHHHHHHHHhcc---cC
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQ-------------------QKGCVIWITGLSGSGKSTLACALSQAL---HW 128 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v-------------------~~Geiv~I~G~SGSGKSTLlr~L~gll---p~ 128 (176)
++++++.+.| .++++++++.+ .+|++++|+|+||||||||+++|.+++ |+
T Consensus 38 i~~~~v~~~y--------~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~ 109 (308)
T 1sq5_A 38 LSLEEVAEIY--------LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE 109 (308)
T ss_dssp CCHHHHHHTH--------HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT
T ss_pred cchHhHHHHH--------HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence 5566666664 25788888887 899999999999999999999999986 57
Q ss_pred CCeEEEEE---CCee
Q 030515 129 RGKLTYIL---DGDN 140 (176)
Q Consensus 129 ~G~i~~~l---dG~~ 140 (176)
.|++ .+ ||..
T Consensus 110 ~G~i--~vi~~d~~~ 122 (308)
T 1sq5_A 110 HRRV--ELITTDGFL 122 (308)
T ss_dssp CCCE--EEEEGGGGB
T ss_pred CCeE--EEEecCCcc
Confidence 8998 66 7655
No 93
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.86 E-value=2e-10 Score=101.79 Aligned_cols=40 Identities=28% Similarity=0.245 Sum_probs=34.9
Q ss_pred cCcccceecceeEeeCCeE--EEEEcCCCCcHHHHHHHHHhcc
Q 030515 86 KNSVDKRDRQQLLQQKGCV--IWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 86 ~~~~~~l~~isl~v~~Gei--v~I~G~SGSGKSTLlr~L~gll 126 (176)
|+..+ ++++||++++|++ ++|+|+||||||||+++|.|+.
T Consensus 25 y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 25 FDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred ECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 66667 9999999999999 9999999999999999999974
No 94
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.86 E-value=4.4e-10 Score=91.82 Aligned_cols=60 Identities=27% Similarity=0.212 Sum_probs=49.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHH---hcc-cCCCeEEEE--------ECCeeccCCcccCcccChhhHHHhhcceEEec
Q 030515 100 QKGCVIWITGLSGSGKSTLACALS---QAL-HWRGKLTYI--------LDGDNCRHGLNRDLSFKAEDRVENIRRIGSVF 167 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~---gll-p~~G~i~~~--------ldG~~v~~~~~~d~~~~~~~~~~~rrrig~V~ 167 (176)
++|++++|+|+|||||||++++|+ |+. ++.|.+ + .+|.++.. .....+++++++++|
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i--~r~~~~~~~~~g~~~~~---------~~~~~~~~~~~~~~~ 93 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAI--YRVLALAALHHQVDIST---------EEALVPLAAHLDVRF 93 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHH--HHHHHHHHHHTTCCSSS---------STTHHHHHHTCCEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCce--ehHhHHHHHHcCCCccc---------HHHHHHHHHcCCEEE
Confidence 789999999999999999999999 776 688988 6 77776632 245666778899999
Q ss_pred ccc
Q 030515 168 VLS 170 (176)
Q Consensus 168 Q~f 170 (176)
|..
T Consensus 94 ~~~ 96 (252)
T 4e22_A 94 VSQ 96 (252)
T ss_dssp EEE
T ss_pred ecC
Confidence 753
No 95
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.83 E-value=9.3e-10 Score=87.94 Aligned_cols=40 Identities=23% Similarity=0.395 Sum_probs=22.9
Q ss_pred cccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHH-hccc
Q 030515 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALS-QALH 127 (176)
Q Consensus 88 ~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~-gllp 127 (176)
+.+..+++||++++|++++|+|||||||||++++|. +++|
T Consensus 13 ~~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 13 EAQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp ---------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred hhcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 345678999999999999999999999999999999 9874
No 96
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.83 E-value=1.9e-09 Score=103.73 Aligned_cols=41 Identities=27% Similarity=0.243 Sum_probs=38.0
Q ss_pred cccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHh
Q 030515 84 WHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQ 124 (176)
Q Consensus 84 ~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~g 124 (176)
+.|+...+++++||++++|++++|+|+||||||||+|+|++
T Consensus 443 ~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 443 LAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred EEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 33777789999999999999999999999999999999985
No 97
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.78 E-value=2.8e-09 Score=98.27 Aligned_cols=35 Identities=31% Similarity=0.376 Sum_probs=31.9
Q ss_pred ccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHH
Q 030515 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALS 123 (176)
Q Consensus 89 ~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~ 123 (176)
..+|+++||++++||+++|+||||||||||+++|.
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 35799999999999999999999999999998654
No 98
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.76 E-value=4.5e-10 Score=102.94 Aligned_cols=62 Identities=19% Similarity=-0.006 Sum_probs=40.1
Q ss_pred eEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-c-CCCeEEEEECCeeccCCcccCcccChhhHHHhhcceEEecccc
Q 030515 97 LLQQKGCVIWITGLSGSGKSTLACALSQAL-H-WRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 97 l~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p-~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
++++. ++|+|+||||||||+++|.|++ | ++|.+ .++|.++... ...+..+.+++|+|+||++
T Consensus 43 l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~v--t~~g~~i~~~-------~~~~~~~~~~~i~~v~Q~~ 106 (608)
T 3szr_A 43 LALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIV--TRCPLVLKLK-------KLVNEDKWRGKVSYQDYEI 106 (608)
T ss_dssp CCCCC---EECCCCTTSCHHHHHHHHHSCC-------C--CCSCEEEEEE-------ECSSSSCCEEEESCC---C
T ss_pred ccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeE--EEcCEEEEEe-------cCCccccceeEEeeecccc
Confidence 44444 8999999999999999999998 8 79999 9999886321 0011223456799999975
No 99
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.75 E-value=9.8e-10 Score=92.42 Aligned_cols=60 Identities=18% Similarity=0.115 Sum_probs=42.3
Q ss_pred eEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEE---CCeeccCCcccCcccChhhHHHhh-cceEEecccc
Q 030515 97 LLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYIL---DGDNCRHGLNRDLSFKAEDRVENI-RRIGSVFVLS 170 (176)
Q Consensus 97 l~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~l---dG~~v~~~~~~d~~~~~~~~~~~r-rrig~V~Q~f 170 (176)
+++.+|++++|+|+||||||||+++|. ++ |+.|+| .+ +|+++... .. ..+ +++|+|+|.+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i--~~~~~~G~~~t~~---------~~--~~~~~~~g~v~d~p 224 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEV--SEKTERGRHTTTG---------VR--LIPFGKGSFVGDTP 224 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC-----------CCCC---------EE--EEEETTTEEEESSC
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCccccc--ccccCCCCCceee---------EE--EEEcCCCcEEEECc
Confidence 345689999999999999999999999 87 799999 77 78777542 11 112 3589999875
No 100
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.75 E-value=4.7e-09 Score=82.40 Aligned_cols=29 Identities=28% Similarity=0.296 Sum_probs=27.2
Q ss_pred EeeCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 98 LQQKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 98 ~v~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
-+++|++++|+||||||||||+++|++.+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999999999965
No 101
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.74 E-value=1.4e-09 Score=84.89 Aligned_cols=39 Identities=23% Similarity=0.207 Sum_probs=29.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc-cC---CCeEEEEECCeeccC
Q 030515 103 CVIWITGLSGSGKSTLACALSQAL-HW---RGKLTYILDGDNCRH 143 (176)
Q Consensus 103 eiv~I~G~SGSGKSTLlr~L~gll-p~---~G~i~~~ldG~~v~~ 143 (176)
++++|+|+||||||||+++|.+++ |+ .|.| .+||.++..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I--~~dg~~i~~ 45 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVV--KRHAHGDFE 45 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEE--EC-------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEE--EEcCccccc
Confidence 578999999999999999999999 66 6888 999988643
No 102
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.73 E-value=3.7e-09 Score=80.97 Aligned_cols=39 Identities=31% Similarity=0.348 Sum_probs=33.9
Q ss_pred ecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeE
Q 030515 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKL 132 (176)
Q Consensus 93 ~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i 132 (176)
+++++++.+| +.+|+|+|||||||++++|..++ +..|..
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~ 57 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKA 57 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGG
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccc
Confidence 5778889998 99999999999999999999988 555543
No 103
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.73 E-value=4e-09 Score=87.18 Aligned_cols=44 Identities=30% Similarity=0.274 Sum_probs=40.4
Q ss_pred ccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCC-eE
Q 030515 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRG-KL 132 (176)
Q Consensus 89 ~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G-~i 132 (176)
..+|+++++.+++|++++|+|+||||||||++.|++.+ |..| .+
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v 67 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKV 67 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCE
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeE
Confidence 46799999999999999999999999999999999998 6778 56
No 104
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.71 E-value=4e-09 Score=82.55 Aligned_cols=45 Identities=18% Similarity=0.121 Sum_probs=39.3
Q ss_pred ccceeccee-EeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEE
Q 030515 89 VDKRDRQQL-LQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLT 133 (176)
Q Consensus 89 ~~~l~~isl-~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~ 133 (176)
...|+++.. .+++|++++|+|+||||||||+++|++.+ +..|.+.
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~ 55 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCI 55 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEE
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 466788877 79999999999999999999999999887 6777773
No 105
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.71 E-value=1.3e-09 Score=89.90 Aligned_cols=51 Identities=18% Similarity=0.341 Sum_probs=36.4
Q ss_pred EEEeccc-eeeecccccc-CcccceecceeEeeC---CeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 70 LCQNSTV-AKSTNILWHK-NSVDKRDRQQLLQQK---GCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 70 ~~~~~~~-~~~~~~~~~~-~~~~~l~~isl~v~~---Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
+++++++ .+. | +...+++++||++.+ |++++|+|+|||||||++++|++.+
T Consensus 17 ~l~~~~~~~~~------~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSP------FDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ---------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEE------ecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4667776 665 5 567899999999999 9999999999999999999999966
No 106
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.71 E-value=3e-09 Score=92.06 Aligned_cols=47 Identities=28% Similarity=0.239 Sum_probs=38.5
Q ss_pred ceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cC-CCeEEEEECCeec
Q 030515 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HW-RGKLTYILDGDNC 141 (176)
Q Consensus 91 ~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~-~G~i~~~ldG~~v 141 (176)
++++++ +++|++++|+|+|||||||++++|.+++ |. .|+| .+.++++
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I--~~~e~~~ 175 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHI--ITIEDPI 175 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEE--EEEESSC
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEE--EEecccH
Confidence 445544 7899999999999999999999999998 66 8999 5555444
No 107
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.70 E-value=7.5e-10 Score=94.85 Aligned_cols=43 Identities=21% Similarity=0.161 Sum_probs=39.0
Q ss_pred eecceeEeeC--CeEEEEEcCCCCcHHHHHHHHHhcc-cCC----CeEEEEE
Q 030515 92 RDRQQLLQQK--GCVIWITGLSGSGKSTLACALSQAL-HWR----GKLTYIL 136 (176)
Q Consensus 92 l~~isl~v~~--Geiv~I~G~SGSGKSTLlr~L~gll-p~~----G~i~~~l 136 (176)
.+.+++++.+ |+.++|+|+||||||||+++|+|++ |+. |++ ++
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i--~i 207 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGRE--FV 207 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHH--HH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHH--HH
Confidence 4678999999 9999999999999999999999999 777 887 65
No 108
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.70 E-value=1.1e-09 Score=90.89 Aligned_cols=54 Identities=20% Similarity=0.286 Sum_probs=44.7
Q ss_pred ccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeeccC
Q 030515 85 HKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH 143 (176)
Q Consensus 85 ~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~~ 143 (176)
.+....+++++++.+++| ++|.||||||||||+++|++.+.. +.+ .++|.++..
T Consensus 29 ~~~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-~~i--~i~g~~l~~ 82 (274)
T 2x8a_A 29 PVRNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-NFI--SVKGPELLN 82 (274)
T ss_dssp HHHSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-EEE--EEETTTTCS
T ss_pred HhhCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-CEE--EEEcHHHHh
Confidence 355567889999999999 899999999999999999998732 566 888877743
No 109
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.69 E-value=4.3e-09 Score=83.03 Aligned_cols=41 Identities=34% Similarity=0.404 Sum_probs=34.7
Q ss_pred eeCCeEEEEEcCCCCcHHHHHHHHHhcc-cC---CCeEEEEECCeec
Q 030515 99 QQKGCVIWITGLSGSGKSTLACALSQAL-HW---RGKLTYILDGDNC 141 (176)
Q Consensus 99 v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~---~G~i~~~ldG~~v 141 (176)
.++|++++|+|+||||||||+++|.+++ |. .|.+ .+||..+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v--~~d~~~~ 63 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVV--PMDGFHL 63 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEE--ESGGGBC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEE--ecCCCcC
Confidence 5789999999999999999999999999 43 4555 7777665
No 110
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.69 E-value=5.5e-09 Score=94.68 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=32.2
Q ss_pred eeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeE
Q 030515 99 QQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKL 132 (176)
Q Consensus 99 v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i 132 (176)
.++||+++|+||||||||||+++|+|++ |+.|++
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i 56 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP 56 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCcc
Confidence 5799999999999999999999999999 899986
No 111
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.69 E-value=2.6e-09 Score=84.33 Aligned_cols=72 Identities=49% Similarity=0.803 Sum_probs=52.8
Q ss_pred cccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeeccCCcccCcccChhh
Q 030515 84 WHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAED 155 (176)
Q Consensus 84 ~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~~~~~~d~~~~~~~ 155 (176)
|..+.++...+..+.+++|.+++|+|++||||||+++.|.+.+ |..|...+.++++.+...+..+..+...+
T Consensus 7 ~~~~~~~~~~r~~~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l~~~~~~~~~~ 79 (211)
T 1m7g_A 7 FHASALTRSERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEAD 79 (211)
T ss_dssp HHHHCCCHHHHHHHHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTTTCCSSHHH
T ss_pred ccccccCHHHhhcccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhhccccCCCHHH
Confidence 3333444445556778999999999999999999999999998 47883333899988876665555555333
No 112
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.68 E-value=3.2e-09 Score=93.60 Aligned_cols=55 Identities=27% Similarity=0.283 Sum_probs=45.0
Q ss_pred cccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeecc
Q 030515 84 WHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCR 142 (176)
Q Consensus 84 ~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~ 142 (176)
+.++...+++++ + .++|++++|+|||||||||++++|.+++ |..|+| .+.++++.
T Consensus 151 ~~~~~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I--~~~ed~ie 206 (418)
T 1p9r_A 151 MTAHNHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNI--LTVEDPIE 206 (418)
T ss_dssp CCHHHHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCE--EEEESSCC
T ss_pred CCHHHHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEE--EEecccch
Confidence 334455677777 5 3899999999999999999999999998 688999 77777664
No 113
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.67 E-value=1.3e-09 Score=92.62 Aligned_cols=61 Identities=21% Similarity=0.151 Sum_probs=35.5
Q ss_pred eEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEE---CCeeccCCcccCcccChhhHHHhhcceEEecccc
Q 030515 97 LLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYIL---DGDNCRHGLNRDLSFKAEDRVENIRRIGSVFVLS 170 (176)
Q Consensus 97 l~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~l---dG~~v~~~~~~d~~~~~~~~~~~rrrig~V~Q~f 170 (176)
+++.+|++++|+|+||+|||||+++|.|++ |..|++ .+ +|+.++.. .+ ..+..+++++|.+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I--~~~~~~G~~tt~~---------~~--~~~~~~g~v~dtp 232 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEI--SEHLGRGKHTTRH---------VE--LIHTSGGLVADTP 232 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCC---------CC--EEEETTEEEESSC
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccce--eeecCCCcccccH---------HH--HhhcCCEEEecCC
Confidence 677899999999999999999999999998 789999 66 67666431 11 1112278998875
No 114
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.66 E-value=1.2e-08 Score=78.22 Aligned_cols=55 Identities=51% Similarity=0.960 Sum_probs=42.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeeccCCcccCcccChh
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE 154 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~~~~~~d~~~~~~ 154 (176)
++|++++|+|++||||||++++|++.++..|...+.+|++.+...+....++...
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~~~~~~~ 57 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPE 57 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhccccccc
Confidence 5789999999999999999999999884467433378888887655555555543
No 115
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.65 E-value=1.1e-08 Score=86.01 Aligned_cols=49 Identities=22% Similarity=0.161 Sum_probs=22.3
Q ss_pred cccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhc-c-cCCCeEEEEECCeec
Q 030515 84 WHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA-L-HWRGKLTYILDGDNC 141 (176)
Q Consensus 84 ~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gl-l-p~~G~i~~~ldG~~v 141 (176)
..|+...++++++|++ +|+|+||+|||||+++|.+. + |++| + .++|.++
T Consensus 6 ~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i--~~~g~~~ 56 (301)
T 2qnr_A 6 NQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-I--SGAAEKI 56 (301)
T ss_dssp ------------CEEE------EEEEETTSSHHHHHHHHHC-------------------
T ss_pred ceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-c--ccCCccc
Confidence 3477888999999988 99999999999999999987 5 7888 6 6777665
No 116
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.64 E-value=5.3e-09 Score=94.29 Aligned_cols=51 Identities=14% Similarity=0.048 Sum_probs=44.9
Q ss_pred cccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCee
Q 030515 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDN 140 (176)
Q Consensus 88 ~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~ 140 (176)
...+++++++.+++|++++|+|+|||||||++++|.+++ |+.|.+ .++|..
T Consensus 246 ~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~gii--tied~~ 297 (511)
T 2oap_1 246 PSGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVV--SIEDTR 297 (511)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEE--EEESSC
T ss_pred CHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEE--EEcCcc
Confidence 456788999999999999999999999999999999999 688988 676543
No 117
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.63 E-value=1.3e-08 Score=79.54 Aligned_cols=39 Identities=26% Similarity=0.325 Sum_probs=25.0
Q ss_pred cccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 88 ~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
...+++++||++.+|++++|+|+|||||||+++.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 346799999999999999999999999999999999876
No 118
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.57 E-value=1e-08 Score=79.48 Aligned_cols=54 Identities=17% Similarity=0.136 Sum_probs=33.5
Q ss_pred EEEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc------cCCCeE
Q 030515 70 LCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL------HWRGKL 132 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll------p~~G~i 132 (176)
+++++++.+.| + ..++++ |.+.+|+.++|+|+||||||||+++|.|.. |+.|..
T Consensus 3 ~l~~~~~~~~~------~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~ 62 (210)
T 1pui_A 3 NLNYQQTHFVM------S-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRT 62 (210)
T ss_dssp --------CEE------E-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------
T ss_pred chhhhhhhhee------e-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccc
Confidence 35667776664 3 256666 889999999999999999999999999875 356655
No 119
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.57 E-value=2.5e-08 Score=77.22 Aligned_cols=34 Identities=26% Similarity=0.317 Sum_probs=28.4
Q ss_pred eEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCC
Q 030515 97 LLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRG 130 (176)
Q Consensus 97 l~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G 130 (176)
+++.+|++++|+|+|||||||++++|.+++ |..|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 467899999999999999999999999998 6444
No 120
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.56 E-value=2.2e-08 Score=77.18 Aligned_cols=38 Identities=32% Similarity=0.406 Sum_probs=32.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeeccC
Q 030515 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH 143 (176)
Q Consensus 102 Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~~ 143 (176)
|++++|+|+|||||||++++|++ +..|.+ .++|+++..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~--~~~g~~--~i~~d~~~~ 39 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA--QLDNSA--YIEGDIINH 39 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH--HSSSEE--EEEHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHhc--ccCCeE--EEcccchhh
Confidence 68999999999999999999987 667888 888877643
No 121
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.54 E-value=3e-08 Score=76.36 Aligned_cols=60 Identities=38% Similarity=0.645 Sum_probs=45.4
Q ss_pred eEeeCCeEEEEEcCCCCcHHHHHHHHHhccc-CCCeEEEEECCeeccCCcccCcccChhhHH
Q 030515 97 LLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCRHGLNRDLSFKAEDRV 157 (176)
Q Consensus 97 l~v~~Geiv~I~G~SGSGKSTLlr~L~gllp-~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~ 157 (176)
+...+|.+++|+|++||||||+++.|...+. ..+.+ +.++++.+...+.++.++...++.
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~r~ 68 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV-EVLDGDWARTTVSEGAGFTREERL 68 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE-EEEEHHHHHTTTTTTCCCCHHHHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE-EEeeHHHHHHHHhhccCCChhhHH
Confidence 3457899999999999999999999999985 44444 367888776665566666655543
No 122
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.51 E-value=3.6e-09 Score=86.86 Aligned_cols=52 Identities=19% Similarity=0.235 Sum_probs=43.6
Q ss_pred cCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeecc
Q 030515 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (176)
Q Consensus 86 ~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~ 142 (176)
++...+++++++++++| +.|+||||||||||+++|++.+. .|.+ .+++.++.
T Consensus 59 ~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-~~~i--~~~~~~~~ 110 (278)
T 1iy2_A 59 LKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFI--TASGSDFV 110 (278)
T ss_dssp HHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-CCEE--EEEHHHHH
T ss_pred HHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-CCEE--EecHHHHH
Confidence 44557789999999999 88999999999999999999875 6677 77776653
No 123
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.51 E-value=3.5e-09 Score=85.47 Aligned_cols=52 Identities=19% Similarity=0.235 Sum_probs=43.1
Q ss_pred cCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeecc
Q 030515 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (176)
Q Consensus 86 ~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~ 142 (176)
+....+++++++++++| +.|+||||||||||+++|++.+. .|.+ .+++.++.
T Consensus 35 ~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-~~~i--~~~~~~~~ 86 (254)
T 1ixz_A 35 LKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFI--TASGSDFV 86 (254)
T ss_dssp HHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-CCEE--EEEHHHHH
T ss_pred HHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-CCEE--EeeHHHHH
Confidence 44456788999999999 88999999999999999999875 5666 77776653
No 124
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.50 E-value=5.2e-08 Score=74.03 Aligned_cols=38 Identities=34% Similarity=0.520 Sum_probs=33.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeecc
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~ 142 (176)
.+|++++|+|+|||||||++++|.+.+ |.+ .++++++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~---g~~--~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL---HAA--FLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH---TCE--EEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh---CcE--EEeCcccc
Confidence 568999999999999999999999876 777 78887764
No 125
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.50 E-value=4.9e-08 Score=76.33 Aligned_cols=28 Identities=50% Similarity=0.551 Sum_probs=25.3
Q ss_pred eeCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 99 QQKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 99 v~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
.++|++++|+|+|||||||++++|.+++
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999999999987
No 126
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.50 E-value=4.8e-08 Score=93.85 Aligned_cols=34 Identities=32% Similarity=0.405 Sum_probs=31.4
Q ss_pred cceecceeEeeCCeEEEEEcCCCCcHHHHHHHHH
Q 030515 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALS 123 (176)
Q Consensus 90 ~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~ 123 (176)
..|+++||++++|++++|+|+||||||||+++|.
T Consensus 638 ~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 638 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 3599999999999999999999999999999853
No 127
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.48 E-value=8.7e-08 Score=75.78 Aligned_cols=41 Identities=17% Similarity=0.223 Sum_probs=32.8
Q ss_pred EeeCCeEEEEEcCCCCcHHHHHHHHHh--ccc------CCCeEEEEECCee
Q 030515 98 LQQKGCVIWITGLSGSGKSTLACALSQ--ALH------WRGKLTYILDGDN 140 (176)
Q Consensus 98 ~v~~Geiv~I~G~SGSGKSTLlr~L~g--llp------~~G~i~~~ldG~~ 140 (176)
-+++|++++|+|+||||||||++.|++ +++ ..|.+ +++++.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~--~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAM--YIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEE--EEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEE--EEECCC
Confidence 379999999999999999999999999 443 23344 777665
No 128
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=98.47 E-value=4.1e-08 Score=90.64 Aligned_cols=85 Identities=46% Similarity=0.867 Sum_probs=56.7
Q ss_pred eeeccccccCcccceecceeEee----CCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeeccCCcccCcccCh
Q 030515 78 KSTNILWHKNSVDKRDRQQLLQQ----KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKA 153 (176)
Q Consensus 78 ~~~~~~~~~~~~~~l~~isl~v~----~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~~~~~~d~~~~~ 153 (176)
...|+.|....++.-++.....+ +|.+++|+|++||||||+++.|...+...|..++.+|+++++..+..+..+++
T Consensus 24 ~~~~~~~~~~~v~~~~r~~~~~~~~~~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~ 103 (630)
T 1x6v_B 24 RATNVTYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSP 103 (630)
T ss_dssp ----------CCCHHHHHHHSSSSSSCCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSH
T ss_pred ccccccccccCCCHHHHHHHhCCCccCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCCh
Confidence 33566666665555555554454 78899999999999999999999988766755568999999887777777775
Q ss_pred hhHHHhhcc
Q 030515 154 EDRVENIRR 162 (176)
Q Consensus 154 ~~~~~~rrr 162 (176)
.++.+..++
T Consensus 104 ~dree~~r~ 112 (630)
T 1x6v_B 104 EDREENVRR 112 (630)
T ss_dssp HHHHHHHHH
T ss_pred hhhHHHHHH
Confidence 555444333
No 129
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.46 E-value=5.2e-08 Score=76.61 Aligned_cols=28 Identities=36% Similarity=0.335 Sum_probs=23.7
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhccc
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gllp 127 (176)
++|++++|+||||||||||+++|.+++|
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5789999999999999999999999874
No 130
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.44 E-value=2.6e-08 Score=78.44 Aligned_cols=57 Identities=30% Similarity=0.310 Sum_probs=40.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhcc----cCCCeEEEEE--------CCeeccCCcccCcccChhhHHHhhcceEEeccc
Q 030515 102 GCVIWITGLSGSGKSTLACALSQAL----HWRGKLTYIL--------DGDNCRHGLNRDLSFKAEDRVENIRRIGSVFVL 169 (176)
Q Consensus 102 Geiv~I~G~SGSGKSTLlr~L~gll----p~~G~i~~~l--------dG~~v~~~~~~d~~~~~~~~~~~rrrig~V~Q~ 169 (176)
+.+++|+|+|||||||+++.|.+.+ ++.|.+ +. +|.++. .+....++++++++++|.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i--~~~~~~~~~~~g~~~~---------~~~~~~~~~~~~~~~~~~ 73 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI--YRVLALAALHHHVDVA---------SEDALVPLASHLDVRFVS 73 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH--HHHHHHHHHHHTCCTT---------CHHHHHHHHHTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcce--eehhhHHHHHcCCCcc---------CHHHHHHHHHhCceeeec
Confidence 5689999999999999999999865 355555 33 233221 234566677789999885
No 131
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.44 E-value=1.2e-07 Score=80.65 Aligned_cols=47 Identities=15% Similarity=0.306 Sum_probs=40.8
Q ss_pred ecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeec
Q 030515 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNC 141 (176)
Q Consensus 93 ~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v 141 (176)
++++|++++|++++|+|+||+||||++..|++.+ +..|++ .+.+.++
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kV--llid~D~ 143 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKV--LIAAADT 143 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCE--EEEECCC
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeE--EEEeCCC
Confidence 6789999999999999999999999999999998 677888 5555554
No 132
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.44 E-value=7.3e-08 Score=74.62 Aligned_cols=26 Identities=42% Similarity=0.410 Sum_probs=24.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhccc
Q 030515 102 GCVIWITGLSGSGKSTLACALSQALH 127 (176)
Q Consensus 102 Geiv~I~G~SGSGKSTLlr~L~gllp 127 (176)
|++++|+||||||||||+++|.+++|
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999985
No 133
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.43 E-value=4.7e-08 Score=92.89 Aligned_cols=36 Identities=42% Similarity=0.517 Sum_probs=33.0
Q ss_pred ceecceeEeeCCeEEEEEcCCCCcHHHHHHH-HHhcc
Q 030515 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACA-LSQAL 126 (176)
Q Consensus 91 ~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~-L~gll 126 (176)
.|+++||++++|++++|+|+||||||||+++ |.+++
T Consensus 512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l 548 (842)
T 2vf7_A 512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDAL 548 (842)
T ss_dssp TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHH
Confidence 5999999999999999999999999999996 76654
No 134
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.43 E-value=1.5e-07 Score=81.44 Aligned_cols=63 Identities=19% Similarity=0.055 Sum_probs=40.8
Q ss_pred ceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc--cCCCeEEEEEC-CeeccCCcccCcccChhhHHHhhcceEEec
Q 030515 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL--HWRGKLTYILD-GDNCRHGLNRDLSFKAEDRVENIRRIGSVF 167 (176)
Q Consensus 91 ~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll--p~~G~i~~~ld-G~~v~~~~~~d~~~~~~~~~~~rrrig~V~ 167 (176)
.++++++. .+|++++|+|+||||||||+++|.|.+ |..|.+ .++ |.... ...++++++++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I--~~~~G~g~~--------------tt~~~~i~~v~ 267 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDV--SNVSGLGQH--------------TTTAARLYHFP 267 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------------------CCCEEEECT
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCc--cccCCCCcc--------------ceEEEEEEEEC
Confidence 45666663 589999999999999999999999987 578988 654 44321 01234588888
Q ss_pred ccc
Q 030515 168 VLS 170 (176)
Q Consensus 168 Q~f 170 (176)
|..
T Consensus 268 q~~ 270 (358)
T 2rcn_A 268 HGG 270 (358)
T ss_dssp TSC
T ss_pred CCC
Confidence 764
No 135
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.41 E-value=1.5e-07 Score=82.90 Aligned_cols=48 Identities=19% Similarity=0.090 Sum_probs=37.1
Q ss_pred EEeccceeeeccccccCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCC
Q 030515 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRG 130 (176)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G 130 (176)
+.++++.+. |+...++++++|++ +|+|+||||||||+++|.|.. +..|
T Consensus 12 l~~~~l~~~------y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~ 60 (418)
T 2qag_C 12 VGFANLPNQ------VYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE 60 (418)
T ss_dssp ---CCCCCC------TTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC
T ss_pred EEEEeccee------ECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC
Confidence 556666665 67778999999997 999999999999999999987 4443
No 136
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.41 E-value=1.3e-07 Score=72.87 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=25.7
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhccc
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gllp 127 (176)
.+|++++|+||||||||||+++|.+.+|
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3689999999999999999999999875
No 137
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.40 E-value=2.5e-07 Score=77.84 Aligned_cols=32 Identities=28% Similarity=0.277 Sum_probs=28.4
Q ss_pred cceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 94 ~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
++++++.+| +.+|+|+||||||||+.+|..++
T Consensus 17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp CEEEECCSS-EEEEECCTTTCSTHHHHHHHHTS
T ss_pred CeEEecCCC-cEEEECCCCCcHHHHHHHHHHHh
Confidence 567888888 99999999999999999999654
No 138
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.37 E-value=9.9e-08 Score=82.34 Aligned_cols=35 Identities=29% Similarity=0.328 Sum_probs=31.1
Q ss_pred EeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cC-CCeE
Q 030515 98 LQQKGCVIWITGLSGSGKSTLACALSQAL-HW-RGKL 132 (176)
Q Consensus 98 ~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~-~G~i 132 (176)
...+|++++|+|||||||||++++|.+++ |+ .|.+
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i 155 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHI 155 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEE
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEE
Confidence 67889999999999999999999999999 55 4666
No 139
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.36 E-value=1.9e-07 Score=90.24 Aligned_cols=39 Identities=21% Similarity=0.121 Sum_probs=35.8
Q ss_pred CcccceecceeEeeC-------CeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 87 NSVDKRDRQQLLQQK-------GCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 87 ~~~~~l~~isl~v~~-------Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
+...++++++|++.+ |++++|+|||||||||++|++ |++
T Consensus 767 ~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~ 812 (1022)
T 2o8b_B 767 GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLL 812 (1022)
T ss_dssp CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHH
T ss_pred CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHH
Confidence 556789999999987 899999999999999999999 876
No 140
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.36 E-value=1.7e-07 Score=73.42 Aligned_cols=35 Identities=43% Similarity=0.383 Sum_probs=31.5
Q ss_pred EeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeE
Q 030515 98 LQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKL 132 (176)
Q Consensus 98 ~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i 132 (176)
..++|++++|+|+|||||||++++|.+++ +..|.+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v 53 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISV 53 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeE
Confidence 36789999999999999999999999998 567777
No 141
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.35 E-value=1e-07 Score=73.00 Aligned_cols=42 Identities=29% Similarity=0.423 Sum_probs=34.3
Q ss_pred eeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEEC
Q 030515 96 QLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILD 137 (176)
Q Consensus 96 sl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ld 137 (176)
+|.+.+|+.++|.||||||||||++++.+.+ |..|..+++++
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~ 74 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD 74 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4567889999999999999999999999998 57775433443
No 142
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.34 E-value=1.4e-07 Score=71.40 Aligned_cols=41 Identities=29% Similarity=0.334 Sum_probs=32.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeec
Q 030515 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v 141 (176)
+|+.++|+|+||||||||++++.+.++..|.-++++++.++
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~ 75 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASM 75 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHh
Confidence 89999999999999999999999998546722226666544
No 143
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.34 E-value=8.9e-08 Score=82.05 Aligned_cols=51 Identities=24% Similarity=0.249 Sum_probs=41.2
Q ss_pred cceecc-eeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc---cCC----CeEEEEECCeec
Q 030515 90 DKRDRQ-QLLQQKGCVIWITGLSGSGKSTLACALSQAL---HWR----GKLTYILDGDNC 141 (176)
Q Consensus 90 ~~l~~i-sl~v~~Geiv~I~G~SGSGKSTLlr~L~gll---p~~----G~i~~~ldG~~v 141 (176)
..||.+ ++.+++|+++.|+|+||||||||++.+++.. |+. |.+ +++++++.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~v-i~i~~e~~ 176 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSV-IWIDTENT 176 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEE-EEEESSSC
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeE-EEEeCCCC
Confidence 556666 6889999999999999999999999999986 344 562 27887654
No 144
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.33 E-value=2.1e-08 Score=84.86 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=36.7
Q ss_pred cCcccceecceeEeeCC-------eEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 86 KNSVDKRDRQQLLQQKG-------CVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 86 ~~~~~~l~~isl~v~~G-------eiv~I~G~SGSGKSTLlr~L~gll 126 (176)
+++..+++++++.+++| +.++|.||||+|||||+++|++.+
T Consensus 28 ~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 28 IGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 67777888999988766 789999999999999999999987
No 145
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.32 E-value=1.5e-07 Score=75.35 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=34.5
Q ss_pred EeeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeecc
Q 030515 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (176)
Q Consensus 98 ~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~ 142 (176)
..++|++++|.|+|||||||++++|.++ .|++ .+.+++..
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~---~g~v--~~~~~~~~ 55 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY---KNDI--CLLTEPVE 55 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG---TTTE--EEECCTHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc---cCCe--EEEecCHH
Confidence 4589999999999999999999999997 7888 77776653
No 146
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.31 E-value=2e-07 Score=89.30 Aligned_cols=38 Identities=21% Similarity=0.191 Sum_probs=34.9
Q ss_pred cccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhc
Q 030515 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 88 ~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gl 125 (176)
...++++++|++++|++++|+|||||||||++|++.++
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 45788999999999999999999999999999999754
No 147
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.30 E-value=2.6e-07 Score=86.96 Aligned_cols=43 Identities=19% Similarity=0.140 Sum_probs=37.3
Q ss_pred CcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc--cCCCeE
Q 030515 87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL--HWRGKL 132 (176)
Q Consensus 87 ~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll--p~~G~i 132 (176)
+...+++++||+ |++++|+|||||||||++|+|+++. ++.|.+
T Consensus 564 ~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~ 608 (765)
T 1ewq_A 564 RTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSF 608 (765)
T ss_dssp TSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCC
T ss_pred CCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCce
Confidence 345678999998 9999999999999999999999986 577754
No 148
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.30 E-value=3.3e-07 Score=86.67 Aligned_cols=39 Identities=23% Similarity=0.123 Sum_probs=35.5
Q ss_pred CcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 87 ~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
+...++++++|+ ++|++++|+|||||||||++|+|+++.
T Consensus 593 ~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 593 NEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 345688999999 999999999999999999999999975
No 149
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.29 E-value=1.4e-07 Score=75.87 Aligned_cols=36 Identities=25% Similarity=0.258 Sum_probs=31.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHH---hcc-cCCCeEEEEECC
Q 030515 101 KGCVIWITGLSGSGKSTLACALS---QAL-HWRGKLTYILDG 138 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLlr~L~---gll-p~~G~i~~~ldG 138 (176)
++++++|+|+|||||||++++|+ |+. ++.|++ .+++
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i--~~~~ 65 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHF--LREN 65 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHH--HHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHH--HHHH
Confidence 57999999999999999999999 887 677877 5544
No 150
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=98.28 E-value=6.2e-08 Score=88.43 Aligned_cols=66 Identities=41% Similarity=0.651 Sum_probs=51.9
Q ss_pred eeCCeEEEEEcCCCCcHHHHHHHHHhcccCCC-eEEEEECCeeccCCcccCcccChhhHHHhhcceE
Q 030515 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRG-KLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIG 164 (176)
Q Consensus 99 v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G-~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig 164 (176)
.++|.+++|+|+|||||||+++.|...+...| ..++.+|++++++.+.+++.++..++.+..++++
T Consensus 393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l~~~~~f~~~er~~~i~ri~ 459 (573)
T 1m8p_A 393 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNIQRIA 459 (573)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCTTCCCSHHHHHHHHHHHH
T ss_pred cccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHhccccCCChhHHHHHHHHHH
Confidence 46788999999999999999999999886555 4445889999887777888888777664444443
No 151
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.28 E-value=4.3e-07 Score=71.63 Aligned_cols=28 Identities=32% Similarity=0.485 Sum_probs=26.3
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhccc
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gllp 127 (176)
++|++++|+|||||||||++++|.+.+|
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 6899999999999999999999999884
No 152
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.28 E-value=4.3e-07 Score=79.54 Aligned_cols=62 Identities=18% Similarity=0.122 Sum_probs=41.4
Q ss_pred EeeCCeEEEEEcCCCCcHHHHHHH--HHhccc-CCC---eEEEEECCeeccCCcccCcccChhhHHHhhcceEEecc
Q 030515 98 LQQKGCVIWITGLSGSGKSTLACA--LSQALH-WRG---KLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGSVFV 168 (176)
Q Consensus 98 ~v~~Geiv~I~G~SGSGKSTLlr~--L~gllp-~~G---~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig~V~Q 168 (176)
-+++|+++.|+|+||||||||++. ++.++| +.| .-+++++++... ....+..+.+++++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~---------~~~rl~~~a~~~gl~~~ 241 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTF---------RPVRLVSIAQRFGLDPD 241 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC---------CHHHHHHHHHHTTCCHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCcc---------CHHHHHHHHHHcCCChH
Confidence 479999999999999999999994 456665 322 222378876532 22344444555666655
No 153
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.27 E-value=1.2e-07 Score=80.94 Aligned_cols=49 Identities=18% Similarity=0.104 Sum_probs=39.7
Q ss_pred cccCcccceecceeEeeCCe------EEEEEcCCCCcHHHHHHHHHhccc---CCCeE
Q 030515 84 WHKNSVDKRDRQQLLQQKGC------VIWITGLSGSGKSTLACALSQALH---WRGKL 132 (176)
Q Consensus 84 ~~~~~~~~l~~isl~v~~Ge------iv~I~G~SGSGKSTLlr~L~gllp---~~G~i 132 (176)
..++....+++++..+.+.+ +++|+|+|||||||++++|++++. ..|.+
T Consensus 68 ~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v 125 (321)
T 3tqc_A 68 FYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNV 125 (321)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCE
T ss_pred HhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeE
Confidence 33677778888887776655 999999999999999999999983 46665
No 154
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.26 E-value=4.5e-07 Score=76.00 Aligned_cols=46 Identities=24% Similarity=0.281 Sum_probs=39.4
Q ss_pred ecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeecc
Q 030515 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCR 142 (176)
Q Consensus 93 ~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v~ 142 (176)
++++|+ +|++++|+|+||+||||+++.|++.+ +..|++ .+.+.++.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v--~l~~~d~~ 137 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRP--LLVAADTQ 137 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCE--EEEECCSS
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeE--EEecCCcc
Confidence 678888 99999999999999999999999999 577888 66555553
No 155
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.23 E-value=5.8e-07 Score=76.03 Aligned_cols=46 Identities=20% Similarity=0.357 Sum_probs=38.3
Q ss_pred cceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeec
Q 030515 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNC 141 (176)
Q Consensus 94 ~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v 141 (176)
.++++.++|++++|+|+|||||||+++.|++.+ +..|++ .+.+.+.
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV--~lv~~D~ 142 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSV--VLAAADT 142 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE--EEEEECT
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEE--EEEcccc
Confidence 456667899999999999999999999999999 677788 6655554
No 156
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.23 E-value=3.6e-07 Score=77.05 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=34.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc---------cCCCeEEEEECCeeccC
Q 030515 103 CVIWITGLSGSGKSTLACALSQAL---------HWRGKLTYILDGDNCRH 143 (176)
Q Consensus 103 eiv~I~G~SGSGKSTLlr~L~gll---------p~~G~i~~~ldG~~v~~ 143 (176)
++++|+|+||||||||+++|.+.. |+.|++ .+||..+..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i--~idg~~l~~ 52 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEV--SVDDQLIGD 52 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSC--CEEEEEECT
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCccc--CccHHHHhC
Confidence 588999999999999999999874 588999 889988754
No 157
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.21 E-value=6.6e-07 Score=85.88 Aligned_cols=35 Identities=23% Similarity=0.070 Sum_probs=32.6
Q ss_pred cccceecceeEeeCCeEEEEEcCCCCcHHHHHHHH
Q 030515 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACAL 122 (176)
Q Consensus 88 ~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L 122 (176)
...++++++|++.+|++++|+|||||||||++|++
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHH
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHH
Confidence 34678899999999999999999999999999999
No 158
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.20 E-value=6.3e-07 Score=69.79 Aligned_cols=24 Identities=42% Similarity=0.515 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccc
Q 030515 104 VIWITGLSGSGKSTLACALSQALH 127 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gllp 127 (176)
.++|+||||||||||+++|+|++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999999873
No 159
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.19 E-value=5.9e-07 Score=67.72 Aligned_cols=36 Identities=33% Similarity=0.457 Sum_probs=28.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeec
Q 030515 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v 141 (176)
.+++++|+|+|||||||++++|++.+. .. ++|++.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~---~~--~id~d~~ 38 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN---ME--FYDSDQE 38 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT---CE--EEEHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC---CC--EEeccHH
Confidence 467899999999999999999999773 23 5665443
No 160
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.18 E-value=5.5e-07 Score=86.76 Aligned_cols=32 Identities=34% Similarity=0.417 Sum_probs=30.7
Q ss_pred ceecceeEeeCCeEEEEEcCCCCcHHHHHHHH
Q 030515 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACAL 122 (176)
Q Consensus 91 ~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L 122 (176)
.|+++||++++|++++|+|+||||||||+++|
T Consensus 657 ~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~i 688 (993)
T 2ygr_A 657 NLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDI 688 (993)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHTTT
T ss_pred cccCceEEECCCCEEEEEcCCCCCHHHHHHHH
Confidence 58999999999999999999999999999985
No 161
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.17 E-value=4.2e-07 Score=79.08 Aligned_cols=42 Identities=31% Similarity=0.181 Sum_probs=37.6
Q ss_pred ccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeE
Q 030515 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKL 132 (176)
Q Consensus 89 ~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i 132 (176)
..+++++++.+++|++++|.||||||||||+++|++.. .|.+
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~--~g~~ 197 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC--GGKA 197 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH--CCEE
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc--CCcE
Confidence 36789999999999999999999999999999999853 5666
No 162
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.14 E-value=5.9e-07 Score=70.95 Aligned_cols=49 Identities=12% Similarity=0.029 Sum_probs=34.3
Q ss_pred cceecc-eeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCe
Q 030515 90 DKRDRQ-QLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGD 139 (176)
Q Consensus 90 ~~l~~i-sl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~ 139 (176)
..||++ .--+++|+++.|.|+|||||||++..++... +..+.+. +++.+
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~-~~~~e 60 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGI-YVALE 60 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEE-EEESS
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEE-EEEcc
Confidence 345554 4458999999999999999999977665544 5444442 45443
No 163
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.13 E-value=1.5e-06 Score=83.19 Aligned_cols=31 Identities=32% Similarity=0.483 Sum_probs=29.0
Q ss_pred ccceecceeEeeCCeEEEEEcCCCCcHHHHH
Q 030515 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLA 119 (176)
Q Consensus 89 ~~~l~~isl~v~~Geiv~I~G~SGSGKSTLl 119 (176)
...|+++||++++|++++|+|+||||||||+
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhH
Confidence 3469999999999999999999999999997
No 164
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.12 E-value=2.6e-07 Score=83.43 Aligned_cols=50 Identities=22% Similarity=0.282 Sum_probs=40.9
Q ss_pred cCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECC
Q 030515 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDG 138 (176)
Q Consensus 86 ~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG 138 (176)
+....++.++++++ +|++++|+||||+||||++++|.+.+ +..|.+ .+.+
T Consensus 93 i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i--~~~~ 143 (543)
T 3m6a_A 93 ILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRI--SLGG 143 (543)
T ss_dssp HHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEE--CCCC
T ss_pred HHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEE--Eecc
Confidence 44556778888888 89999999999999999999999998 555666 5544
No 165
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.11 E-value=1.4e-06 Score=69.58 Aligned_cols=32 Identities=28% Similarity=0.288 Sum_probs=26.8
Q ss_pred eeEeeCCeEEEEEcCCCCcHHHHHHHHHhccc
Q 030515 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (176)
Q Consensus 96 sl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp 127 (176)
|+...+|++++|+||||||||||+++|.+..|
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 44556899999999999999999999998765
No 166
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.09 E-value=1.6e-06 Score=67.63 Aligned_cols=30 Identities=40% Similarity=0.493 Sum_probs=27.2
Q ss_pred EeeCCeEEEEEcCCCCcHHHHHHHHHhccc
Q 030515 98 LQQKGCVIWITGLSGSGKSTLACALSQALH 127 (176)
Q Consensus 98 ~v~~Geiv~I~G~SGSGKSTLlr~L~gllp 127 (176)
++++|++++|+|+|||||||+++.|.+.++
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 468899999999999999999999999763
No 167
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.08 E-value=1.9e-06 Score=74.17 Aligned_cols=36 Identities=33% Similarity=0.362 Sum_probs=30.4
Q ss_pred cceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 90 ~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
..++++++++.+| +++|+|+||||||||+.+|..++
T Consensus 12 ~~~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 12 LGLKNVDIEFQSG-ITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp TTEEEEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCccceEEecCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 3456778888998 78899999999999999998554
No 168
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.08 E-value=1.1e-06 Score=68.44 Aligned_cols=48 Identities=23% Similarity=0.129 Sum_probs=35.8
Q ss_pred cceeccee-EeeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCee
Q 030515 90 DKRDRQQL-LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (176)
Q Consensus 90 ~~l~~isl-~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~ 140 (176)
..||.+.. -+++|++++|+|+|||||||+++.+++ ...+.+ ++++.+.
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v-~~i~~~~ 55 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKV-AYVDTEG 55 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEE-EEEESSC
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcE-EEEECCC
Confidence 45566544 589999999999999999999999999 333344 2565443
No 169
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.08 E-value=1.9e-06 Score=74.50 Aligned_cols=34 Identities=29% Similarity=0.244 Sum_probs=31.2
Q ss_pred cceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHh
Q 030515 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQ 124 (176)
Q Consensus 90 ~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~g 124 (176)
..++++++++.+| +++|+|+|||||||++++|.+
T Consensus 15 ~~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 15 RNLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp TTCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 3467889999999 999999999999999999997
No 170
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.06 E-value=8.4e-07 Score=80.83 Aligned_cols=54 Identities=15% Similarity=0.155 Sum_probs=45.9
Q ss_pred cCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCC-CeEEEEECCeec
Q 030515 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWR-GKLTYILDGDNC 141 (176)
Q Consensus 86 ~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~-G~i~~~ldG~~v 141 (176)
++...+++++++.+++|+.+.|+||||+||||++++|.+++ +.. |.+ .+++...
T Consensus 44 ~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~--~~~~~~~ 99 (604)
T 3k1j_A 44 IGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDI--LVFPNPE 99 (604)
T ss_dssp CSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEE--EEECCTT
T ss_pred ECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeE--EEeCCcc
Confidence 67888999999999999999999999999999999999999 454 555 5555443
No 171
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.05 E-value=7.6e-07 Score=75.74 Aligned_cols=47 Identities=26% Similarity=0.142 Sum_probs=41.3
Q ss_pred cCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeE
Q 030515 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKL 132 (176)
Q Consensus 86 ~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i 132 (176)
++...+++++++.+.++.+++|+|++|+||||+++.|.+.+ +..+++
T Consensus 40 ~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v 87 (341)
T 2p67_A 40 ALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKV 87 (341)
T ss_dssp HHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred hHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 45557888999999999999999999999999999999988 566666
No 172
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.05 E-value=1.3e-06 Score=76.87 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=32.9
Q ss_pred eecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 92 l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
-++++|+++.++.++|+|+||||||||+++|.+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 46899999999999999999999999999999983
No 173
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.05 E-value=1.9e-06 Score=77.15 Aligned_cols=36 Identities=22% Similarity=0.204 Sum_probs=32.1
Q ss_pred eeEeeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCe
Q 030515 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGK 131 (176)
Q Consensus 96 sl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~ 131 (176)
+..+.+|++++|+|+||||||||+++++++++..|.
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~ 310 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACANKE 310 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCC
Confidence 458999999999999999999999999999854575
No 174
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.04 E-value=3.1e-06 Score=65.12 Aligned_cols=36 Identities=25% Similarity=0.358 Sum_probs=29.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc-c-----------CCCeEEEEECCeec
Q 030515 104 VIWITGLSGSGKSTLACALSQAL-H-----------WRGKLTYILDGDNC 141 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll-p-----------~~G~i~~~ldG~~v 141 (176)
.++|+|+||||||||++.+.+.. + ..|.+ .++|+++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i--~~~g~~~ 78 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI--QVDGKTI 78 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEE--EETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEE--EECCEEE
Confidence 57999999999999999999976 3 24555 7788665
No 175
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.01 E-value=3.2e-06 Score=68.56 Aligned_cols=44 Identities=27% Similarity=0.452 Sum_probs=36.4
Q ss_pred EeeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeeccCC
Q 030515 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG 144 (176)
Q Consensus 98 ~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~~~ 144 (176)
..+++.+++|+|+|||||||+++.|...++ .+.+ .++++.++..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-~~~~--~~~~D~~r~~ 71 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-GNIV--IIDGDSFRSQ 71 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-TCCE--EECGGGGGTT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC-CCcE--EEecHHHHHh
Confidence 467889999999999999999999998774 2445 8899888654
No 176
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.01 E-value=4.4e-06 Score=74.64 Aligned_cols=35 Identities=31% Similarity=0.329 Sum_probs=30.7
Q ss_pred ceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 91 ~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
.++++++++.+| +.+|+|+||||||||+.+|..++
T Consensus 50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~ll 84 (517)
T 4ad8_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLL 84 (517)
T ss_dssp TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence 456788899999 99999999999999999997663
No 177
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.97 E-value=3.9e-06 Score=67.60 Aligned_cols=42 Identities=24% Similarity=0.232 Sum_probs=29.1
Q ss_pred ceecceeEee---CCeEEEEEcCCCCcHHHHHHHHHhcccCCCeE
Q 030515 91 KRDRQQLLQQ---KGCVIWITGLSGSGKSTLACALSQALHWRGKL 132 (176)
Q Consensus 91 ~l~~isl~v~---~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i 132 (176)
-+.+.|+... +|.+++|.|++||||||+++.|...+...+.+
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~ 56 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDV 56 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCE
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCc
Confidence 4566676665 99999999999999999999999988443344
No 178
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.96 E-value=6e-06 Score=67.57 Aligned_cols=29 Identities=31% Similarity=0.350 Sum_probs=26.9
Q ss_pred eeCCeEEEEEcCCCCcHHHHHHHHHhccc
Q 030515 99 QQKGCVIWITGLSGSGKSTLACALSQALH 127 (176)
Q Consensus 99 v~~Geiv~I~G~SGSGKSTLlr~L~gllp 127 (176)
+++|++++|+|+||||||||++.+++.+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 68999999999999999999999998663
No 179
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.93 E-value=4.9e-06 Score=64.08 Aligned_cols=32 Identities=34% Similarity=0.510 Sum_probs=26.5
Q ss_pred cceeEeeCCeEEEEEcCCCCcHHHHHHHHHhc
Q 030515 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 94 ~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gl 125 (176)
++|+...++.+++|+|++||||||+++.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46788889999999999999999999999886
No 180
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.91 E-value=4.5e-06 Score=69.75 Aligned_cols=35 Identities=26% Similarity=0.293 Sum_probs=24.8
Q ss_pred EEEEcCCCCcHHHHHHHHHh-cc-cCCCeEEEEECCeec
Q 030515 105 IWITGLSGSGKSTLACALSQ-AL-HWRGKLTYILDGDNC 141 (176)
Q Consensus 105 v~I~G~SGSGKSTLlr~L~g-ll-p~~G~i~~~ldG~~v 141 (176)
+.|.||||+||||++++|.+ ++ |..|.+ .++|.++
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i--~~~~~~~ 75 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRL--KIDVRQF 75 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC----------
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeE--Eecceee
Confidence 78999999999999999999 55 688988 7777654
No 181
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.90 E-value=1.4e-06 Score=78.32 Aligned_cols=52 Identities=19% Similarity=0.251 Sum_probs=42.1
Q ss_pred CcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeeccC
Q 030515 87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH 143 (176)
Q Consensus 87 ~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~~ 143 (176)
.....++++++.+.+| +.|+||||+|||||+++|++.+. .+.+ .+++.++..
T Consensus 51 ~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-~~~i--~i~g~~~~~ 102 (499)
T 2dhr_A 51 KNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFI--TASGSDFVE 102 (499)
T ss_dssp HCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-CCEE--EEEGGGGTS
T ss_pred hchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-CCEE--EEehhHHHH
Confidence 3445678889999998 78999999999999999999874 4556 788777643
No 182
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.90 E-value=3.5e-06 Score=65.39 Aligned_cols=35 Identities=37% Similarity=0.559 Sum_probs=28.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeec
Q 030515 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (176)
Q Consensus 102 Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v 141 (176)
..+++|+|+|||||||+++.|.+.+ |.. .++++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l---g~~--~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC---GYP--FIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH---TCC--EEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CCE--EEeCCcC
Confidence 5689999999999999999998876 444 6666655
No 183
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.90 E-value=5.9e-06 Score=62.42 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhccc
Q 030515 102 GCVIWITGLSGSGKSTLACALSQALH 127 (176)
Q Consensus 102 Geiv~I~G~SGSGKSTLlr~L~gllp 127 (176)
|.+++|+|+|||||||+++.|...++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998764
No 184
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.90 E-value=4.9e-06 Score=65.00 Aligned_cols=30 Identities=23% Similarity=0.208 Sum_probs=26.4
Q ss_pred EeeCCeEEEEEcCCCCcHHHHHHHHHhccc
Q 030515 98 LQQKGCVIWITGLSGSGKSTLACALSQALH 127 (176)
Q Consensus 98 ~v~~Geiv~I~G~SGSGKSTLlr~L~gllp 127 (176)
...+|.+++|+|+|||||||+++.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 357899999999999999999999988764
No 185
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.89 E-value=6.2e-06 Score=71.86 Aligned_cols=32 Identities=31% Similarity=0.251 Sum_probs=28.1
Q ss_pred eEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cC
Q 030515 97 LLQQKGCVIWITGLSGSGKSTLACALSQAL-HW 128 (176)
Q Consensus 97 l~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~ 128 (176)
+++.+|++++|+|||||||||++++|.+++ +.
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 456779999999999999999999999988 54
No 186
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.87 E-value=7e-06 Score=68.80 Aligned_cols=33 Identities=24% Similarity=0.258 Sum_probs=29.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCC-eE
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQAL-HWRG-KL 132 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G-~i 132 (176)
.+|++++|+|+|||||||+++.|++.+ +..| ++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V 137 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKI 137 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEE
Confidence 579999999999999999999999999 5789 55
No 187
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=97.86 E-value=4.6e-06 Score=75.62 Aligned_cols=59 Identities=44% Similarity=0.756 Sum_probs=47.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeeccCCcccCcccChhhHHH
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE 158 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~ 158 (176)
+.+.+++|+|++||||||+++.|...+...|..++.+|++.+++.+.++..+...++..
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~~~~~f~~~er~~ 428 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGLGFSKEDRIT 428 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCTTCCSSHHHHHH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhcccccccHHHHHH
Confidence 45789999999999999999999998866676556889988877667777777655544
No 188
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.84 E-value=1e-05 Score=62.24 Aligned_cols=36 Identities=25% Similarity=0.346 Sum_probs=28.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc------cC------CCeEEEEECCeec
Q 030515 104 VIWITGLSGSGKSTLACALSQAL------HW------RGKLTYILDGDNC 141 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll------p~------~G~i~~~ldG~~v 141 (176)
.++|+|+||||||||++++.+.. |+ .|.+ .++|+.+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i--~~~g~~~ 54 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI--QVDGKTI 54 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEE--EETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEE--EECCEEE
Confidence 47899999999999999999974 22 2445 7888655
No 189
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.84 E-value=9e-06 Score=71.07 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=33.1
Q ss_pred EeeCCeEEEEEcCCCCcHHHHHHHHHh------------cc-cCCCeEEEEECC
Q 030515 98 LQQKGCVIWITGLSGSGKSTLACALSQ------------AL-HWRGKLTYILDG 138 (176)
Q Consensus 98 ~v~~Geiv~I~G~SGSGKSTLlr~L~g------------ll-p~~G~i~~~ldG 138 (176)
.+.+|+.++|+|+||+|||||+++|.+ .+ |..|.+ .+.|
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v--~v~~ 67 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKV--AVPD 67 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEE--EECC
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeee--eeCC
Confidence 357899999999999999999999999 44 667877 6665
No 190
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.82 E-value=1e-05 Score=71.43 Aligned_cols=45 Identities=24% Similarity=0.276 Sum_probs=36.9
Q ss_pred ecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCeec
Q 030515 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNC 141 (176)
Q Consensus 93 ~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~v 141 (176)
++++|+ ++++++|+|++||||||++..|++.+ +..+++ .+.+.++
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~V--llvd~D~ 136 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRP--LLVAADT 136 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCE--EEEECCS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeE--EEeeccc
Confidence 678887 89999999999999999999999999 566677 4433343
No 191
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.76 E-value=1.8e-05 Score=59.72 Aligned_cols=30 Identities=33% Similarity=0.362 Sum_probs=23.3
Q ss_pred eeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 96 QLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 96 sl~v~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
.++..+ .+.+|+|||||||||++.+|.-.+
T Consensus 18 ~i~f~~-g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 18 VVEFKE-GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEECCS-EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEcCC-CeEEEECCCCCCHHHHHHHHHHHH
Confidence 344444 488999999999999999987443
No 192
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.75 E-value=1.4e-05 Score=66.88 Aligned_cols=29 Identities=28% Similarity=0.364 Sum_probs=26.5
Q ss_pred eeCCeEEEEEcCCCCcHHHHHHHHHhccc
Q 030515 99 QQKGCVIWITGLSGSGKSTLACALSQALH 127 (176)
Q Consensus 99 v~~Geiv~I~G~SGSGKSTLlr~L~gllp 127 (176)
-.++.+++|.|+|||||||+++.|.++++
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 35789999999999999999999999984
No 193
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.74 E-value=1.5e-05 Score=61.85 Aligned_cols=32 Identities=34% Similarity=0.530 Sum_probs=25.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeec
Q 030515 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v 141 (176)
+++|+|++||||||++++|+++ |.. .+|++.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l----g~~--~id~d~~ 35 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL----GVP--LVDADVV 35 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT----TCC--EEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC----CCc--ccchHHH
Confidence 6899999999999999999983 555 5555443
No 194
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.73 E-value=1.7e-05 Score=67.79 Aligned_cols=34 Identities=26% Similarity=0.335 Sum_probs=29.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEE
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLT 133 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~ 133 (176)
+++.+++|+|++|||||||+++|.+.+ +..|++.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~ 106 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLS 106 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEE
Confidence 457899999999999999999999988 6777773
No 195
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.72 E-value=1.5e-05 Score=60.50 Aligned_cols=27 Identities=37% Similarity=0.516 Sum_probs=23.3
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
.+|.+++|+|++||||||+++.|...+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998644
No 196
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.72 E-value=1.5e-05 Score=59.33 Aligned_cols=23 Identities=39% Similarity=0.411 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
+++|+|++||||||+++.|...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998765
No 197
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.71 E-value=1.7e-05 Score=75.38 Aligned_cols=28 Identities=36% Similarity=0.509 Sum_probs=27.3
Q ss_pred eecceeEeeCCeEEEEEcCCCCcHHHHH
Q 030515 92 RDRQQLLQQKGCVIWITGLSGSGKSTLA 119 (176)
Q Consensus 92 l~~isl~v~~Geiv~I~G~SGSGKSTLl 119 (176)
|+||+++++++++++|+|.||||||||+
T Consensus 26 Lkni~v~iP~~~l~viTGvSGSGKSSLa 53 (842)
T 2vf7_A 26 LKDISVKVPRDALVVFTGVSGSGKSSLA 53 (842)
T ss_dssp CCSEEEEEESSSEEEEESSTTSSHHHHH
T ss_pred CCCeeEEecCCCEEEEECCCCCCHHHHH
Confidence 7899999999999999999999999998
No 198
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.69 E-value=7.2e-06 Score=68.84 Aligned_cols=45 Identities=16% Similarity=0.215 Sum_probs=38.7
Q ss_pred cCcccceecceeEeeCCeE--EEEEcCCCCcHHHHHHHHHhcc-cCCC
Q 030515 86 KNSVDKRDRQQLLQQKGCV--IWITGLSGSGKSTLACALSQAL-HWRG 130 (176)
Q Consensus 86 ~~~~~~l~~isl~v~~Gei--v~I~G~SGSGKSTLlr~L~gll-p~~G 130 (176)
++...+++.++..++.|++ +.|.||+|+||||+++++++.+ +..+
T Consensus 28 ~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 28 YGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp CSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred cCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 5666788888888999988 9999999999999999999987 4444
No 199
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.67 E-value=2.1e-05 Score=63.99 Aligned_cols=45 Identities=31% Similarity=0.358 Sum_probs=34.3
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeeccCC
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG 144 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~~~ 144 (176)
.++.+++|+|++||||||+++.|...+...|...+.++++.+...
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~ 46 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRES 46 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTT
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHH
Confidence 346789999999999999999999877555655334688776543
No 200
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.66 E-value=2.2e-05 Score=59.76 Aligned_cols=27 Identities=41% Similarity=0.580 Sum_probs=24.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
+++.+++|+|++||||||+++.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998765
No 201
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.66 E-value=2.4e-05 Score=60.53 Aligned_cols=21 Identities=43% Similarity=0.491 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 030515 104 VIWITGLSGSGKSTLACALSQ 124 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~g 124 (176)
+++|+|+|||||||+++.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
No 202
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.65 E-value=2e-05 Score=71.07 Aligned_cols=42 Identities=19% Similarity=0.257 Sum_probs=34.7
Q ss_pred eeCCeEEEEEcCCCCcHHHHHHHHHhcccC-C-CeEEEEECCee
Q 030515 99 QQKGCVIWITGLSGSGKSTLACALSQALHW-R-GKLTYILDGDN 140 (176)
Q Consensus 99 v~~Geiv~I~G~SGSGKSTLlr~L~gllp~-~-G~i~~~ldG~~ 140 (176)
.+.|.++||+|+|||||||+.++|+..+.. . |+.++.+||++
T Consensus 392 ~~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 392 PKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp GGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred cccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 367889999999999999999999999853 4 45555788876
No 203
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.65 E-value=2.5e-05 Score=67.48 Aligned_cols=41 Identities=27% Similarity=0.375 Sum_probs=34.3
Q ss_pred eeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCee
Q 030515 99 QQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDN 140 (176)
Q Consensus 99 v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~~ 140 (176)
+.+|+++.|.||+|||||||+..+...+ +..|.++ +++++.
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~Vl-yId~E~ 99 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAA-FIDAEH 99 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE-EEESSC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEE-EEeccc
Confidence 6899999999999999999999999987 5556654 566654
No 204
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.65 E-value=2.3e-05 Score=75.53 Aligned_cols=28 Identities=46% Similarity=0.553 Sum_probs=27.2
Q ss_pred eecceeEeeCCeEEEEEcCCCCcHHHHH
Q 030515 92 RDRQQLLQQKGCVIWITGLSGSGKSTLA 119 (176)
Q Consensus 92 l~~isl~v~~Geiv~I~G~SGSGKSTLl 119 (176)
|+|||++++++++++|+|+||||||||+
T Consensus 36 Lkni~v~iP~~~lvv~tG~SGSGKSSLa 63 (993)
T 2ygr_A 36 LRSVDLDLPRDALIVFTGLSGSGKSSLA 63 (993)
T ss_dssp CCSEEEEEESSSEEEEEESTTSSHHHHH
T ss_pred cCceeeeccCCCEEEEECCCCCcHHHHH
Confidence 8899999999999999999999999996
No 205
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.64 E-value=1.6e-05 Score=66.69 Aligned_cols=39 Identities=26% Similarity=0.216 Sum_probs=34.0
Q ss_pred ec-ceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeE
Q 030515 93 DR-QQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKL 132 (176)
Q Consensus 93 ~~-isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i 132 (176)
++ ++++.+ |++++++|++|+||||++..|++.+ +..+++
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v 129 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKV 129 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCE
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 46 788776 9999999999999999999999998 566677
No 206
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.63 E-value=2.5e-05 Score=75.18 Aligned_cols=28 Identities=43% Similarity=0.597 Sum_probs=27.1
Q ss_pred eecceeEeeCCeEEEEEcCCCCcHHHHH
Q 030515 92 RDRQQLLQQKGCVIWITGLSGSGKSTLA 119 (176)
Q Consensus 92 l~~isl~v~~Geiv~I~G~SGSGKSTLl 119 (176)
|+|||++++++++++|+|+||||||||+
T Consensus 34 Lkni~v~iP~~~lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 34 LKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (972)
T ss_dssp CCSEEEEEETTSEEEEEESTTSSHHHHH
T ss_pred CCceeeeccCCcEEEEECCCCCCHHHHH
Confidence 8899999999999999999999999996
No 207
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.62 E-value=2e-05 Score=60.48 Aligned_cols=35 Identities=46% Similarity=0.468 Sum_probs=27.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeec
Q 030515 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v 141 (176)
+..+++|+|++||||||+++.|... |.. ++|.+.+
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~----g~~--~id~d~~ 41 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW----GYP--VLDLDAL 41 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT----TCC--EEEHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC----CCE--EEcccHH
Confidence 4568999999999999999999985 655 5555443
No 208
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.61 E-value=3e-05 Score=58.71 Aligned_cols=29 Identities=28% Similarity=0.389 Sum_probs=25.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhcccCCC
Q 030515 102 GCVIWITGLSGSGKSTLACALSQALHWRG 130 (176)
Q Consensus 102 Geiv~I~G~SGSGKSTLlr~L~gllp~~G 130 (176)
|.+++|.|++||||||+++.|...+...|
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g 31 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEG 31 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 56899999999999999999998776555
No 209
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.61 E-value=2.9e-05 Score=64.50 Aligned_cols=42 Identities=21% Similarity=0.434 Sum_probs=32.8
Q ss_pred eeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeeccC
Q 030515 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH 143 (176)
Q Consensus 99 v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~~ 143 (176)
...|.+++|+|+|||||||+++.|...++ .+.+ .++++.++.
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~-~~~~--~Is~D~~R~ 71 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ-GNVI--VIDNDTFKQ 71 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTT-TCCE--EECTHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC-CCeE--EEechHhHH
Confidence 45678999999999999999999987654 2455 788766643
No 210
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.60 E-value=2.1e-05 Score=75.38 Aligned_cols=28 Identities=43% Similarity=0.521 Sum_probs=27.3
Q ss_pred eecceeEeeCCeEEEEEcCCCCcHHHHH
Q 030515 92 RDRQQLLQQKGCVIWITGLSGSGKSTLA 119 (176)
Q Consensus 92 l~~isl~v~~Geiv~I~G~SGSGKSTLl 119 (176)
|+|||++++++++++|+|+||||||||+
T Consensus 14 Lkni~~~ip~~~l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 14 LKNITVRIPKNRLVVITGVSGSGKSSLA 41 (916)
T ss_dssp CCSBCCEEETTSEEEEEESTTSSSHHHH
T ss_pred cCcceeccCCCcEEEEECCCCCcHHHHH
Confidence 8899999999999999999999999997
No 211
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.60 E-value=4.1e-05 Score=58.87 Aligned_cols=32 Identities=34% Similarity=0.543 Sum_probs=27.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhcccCCCeE
Q 030515 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKL 132 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i 132 (176)
+|.+++|.|++||||||+++.|...+...|.+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~ 34 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDV 34 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCE
Confidence 46789999999999999999999987655644
No 212
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.57 E-value=3.9e-05 Score=56.66 Aligned_cols=19 Identities=63% Similarity=0.844 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 030515 104 VIWITGLSGSGKSTLACAL 122 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L 122 (176)
+++|+|++||||||+++.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 213
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.56 E-value=3.7e-05 Score=58.40 Aligned_cols=26 Identities=27% Similarity=0.514 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
.+..++|+|++||||||+++.|...+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999998765
No 214
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.54 E-value=3.5e-05 Score=59.58 Aligned_cols=32 Identities=34% Similarity=0.518 Sum_probs=26.5
Q ss_pred eeCCeEEEEEcCCCCcHHHHHHHHHhcccCCC
Q 030515 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRG 130 (176)
Q Consensus 99 v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G 130 (176)
.++|.+++|+|++||||||+++.|...+...|
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~ 37 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALCAAG 37 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 45788999999999999999999998764333
No 215
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.54 E-value=1.3e-05 Score=69.38 Aligned_cols=37 Identities=30% Similarity=0.318 Sum_probs=32.9
Q ss_pred cceecceeEeeCCeE--EEEEcCCCCcHHHHHHHHHhcc
Q 030515 90 DKRDRQQLLQQKGCV--IWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 90 ~~l~~isl~v~~Gei--v~I~G~SGSGKSTLlr~L~gll 126 (176)
.+++.+++.+++|++ ++|+|++||||||++++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 467778888889988 9999999999999999999976
No 216
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.52 E-value=5.7e-05 Score=56.58 Aligned_cols=35 Identities=31% Similarity=0.351 Sum_probs=25.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeec
Q 030515 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (176)
Q Consensus 103 eiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v 141 (176)
.+++|.|++||||||+++.|... ..|.. .++.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~--~~~~~--~i~~d~~ 37 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK--NPGFY--NINRDDY 37 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH--STTEE--EECHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHhh--cCCcE--EecHHHH
Confidence 57899999999999999999872 23444 5554443
No 217
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.52 E-value=5.7e-05 Score=57.08 Aligned_cols=34 Identities=29% Similarity=0.462 Sum_probs=26.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEEC
Q 030515 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILD 137 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ld 137 (176)
+++|+|++||||||+++.|...+...|..+..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~ 36 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN 36 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEE
Confidence 6899999999999999999998765554333554
No 218
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.52 E-value=3.5e-05 Score=58.32 Aligned_cols=23 Identities=57% Similarity=0.681 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
+++|+|++||||||+++.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 47999999999999999998866
No 219
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.52 E-value=2.8e-05 Score=59.03 Aligned_cols=27 Identities=33% Similarity=0.315 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
.++.+++|+|++||||||+++.|...+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 456788999999999999999998654
No 220
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.50 E-value=5e-05 Score=58.70 Aligned_cols=28 Identities=43% Similarity=0.481 Sum_probs=25.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhccc
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gllp 127 (176)
.+|.+++|+|++||||||+++.|...+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999999999998763
No 221
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.48 E-value=6.9e-05 Score=57.54 Aligned_cols=26 Identities=31% Similarity=0.572 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
+|.+++|+|++||||||+++.|...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999999876
No 222
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.48 E-value=5.4e-05 Score=60.36 Aligned_cols=28 Identities=36% Similarity=0.342 Sum_probs=24.2
Q ss_pred EeeCCeEEEEEcCCCCcHHHHHHHHHhc
Q 030515 98 LQQKGCVIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 98 ~v~~Geiv~I~G~SGSGKSTLlr~L~gl 125 (176)
+-.+|.+++|+|++||||||+++.|.+.
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3578899999999999999999999874
No 223
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.47 E-value=7.4e-05 Score=58.47 Aligned_cols=24 Identities=42% Similarity=0.512 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHh
Q 030515 101 KGCVIWITGLSGSGKSTLACALSQ 124 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLlr~L~g 124 (176)
++.+++|+|++||||||+++.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999987
No 224
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.45 E-value=6.1e-05 Score=61.25 Aligned_cols=24 Identities=29% Similarity=0.363 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 103 CVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 103 eiv~I~G~SGSGKSTLlr~L~gll 126 (176)
.+++|+|+|||||||+++.|+..+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999998865
No 225
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.45 E-value=6.5e-05 Score=57.20 Aligned_cols=27 Identities=33% Similarity=0.486 Sum_probs=23.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
.++.+++|+|++||||||+++.|...+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467789999999999999999998754
No 226
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.44 E-value=4.5e-05 Score=57.59 Aligned_cols=26 Identities=38% Similarity=0.682 Sum_probs=18.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
++.+++|+|++||||||+++.|...+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 56789999999999999999998765
No 227
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.44 E-value=7.7e-05 Score=63.33 Aligned_cols=34 Identities=18% Similarity=0.051 Sum_probs=26.9
Q ss_pred ccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhc
Q 030515 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 89 ~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gl 125 (176)
..+|+++++++. .++|+|.+|||||||+++|.|.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 457888888887 7899999999999999999994
No 228
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.43 E-value=8.7e-05 Score=58.46 Aligned_cols=30 Identities=33% Similarity=0.362 Sum_probs=23.3
Q ss_pred eeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 96 QLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 96 sl~v~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
+++..+ .+.+|+|+|||||||++.+|.-.+
T Consensus 18 ~i~f~~-~~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 18 VVEFKE-GINLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEECCS-EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEeCC-CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 344444 588999999999999999986444
No 229
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.43 E-value=5.8e-05 Score=58.64 Aligned_cols=25 Identities=36% Similarity=0.403 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhccc
Q 030515 103 CVIWITGLSGSGKSTLACALSQALH 127 (176)
Q Consensus 103 eiv~I~G~SGSGKSTLlr~L~gllp 127 (176)
.+++|+|+|||||||+++.|.+.++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 5789999999999999999999874
No 230
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.43 E-value=7.6e-05 Score=56.49 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
++.+++|+|++||||||+++.|...+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999987654
No 231
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.43 E-value=6.9e-05 Score=57.25 Aligned_cols=23 Identities=43% Similarity=0.602 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
+++|.|++||||||+++.|...+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 57999999999999999999865
No 232
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.42 E-value=3.5e-05 Score=59.65 Aligned_cols=27 Identities=44% Similarity=0.594 Sum_probs=23.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccCCC
Q 030515 104 VIWITGLSGSGKSTLACALSQALHWRG 130 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gllp~~G 130 (176)
+++|.|++||||||+++.|...+...|
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g 28 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAG 28 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 689999999999999999998874334
No 233
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.42 E-value=7e-05 Score=56.76 Aligned_cols=29 Identities=38% Similarity=0.528 Sum_probs=24.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccCCCeE
Q 030515 104 VIWITGLSGSGKSTLACALSQALHWRGKL 132 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gllp~~G~i 132 (176)
+++|+|++||||||+++.|...++..|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~ 30 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYF 30 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCe
Confidence 57999999999999999999877544544
No 234
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.41 E-value=5.1e-05 Score=70.10 Aligned_cols=61 Identities=21% Similarity=0.182 Sum_probs=41.1
Q ss_pred eeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc---cCCCeEEEEECCeeccCCcccCcccChhhHHHhhcceEEeccc
Q 030515 96 QLLQQKGCVIWITGLSGSGKSTLACALSQAL---HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGSVFVL 169 (176)
Q Consensus 96 sl~v~~Geiv~I~G~SGSGKSTLlr~L~gll---p~~G~i~~~ldG~~v~~~~~~d~~~~~~~~~~~rrrig~V~Q~ 169 (176)
+++++++..++|+|++|+|||||++.|.+.. +..|++ .+|..+.. ....+.++.+++.+|.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V---~~g~~~~d----------~~~~e~~~giti~~~~ 66 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV---EEGTTTTD----------YTPEAKLHRTTVRTGV 66 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG---GGTCCSSC----------CSHHHHHTTSCCSCEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee---cCCccccc----------CCHHHHhcCCeEEecc
Confidence 4567889999999999999999999999765 356765 35544432 1223445567776664
No 235
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.41 E-value=7.1e-05 Score=60.98 Aligned_cols=26 Identities=35% Similarity=0.578 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
.+.+++|+|+|||||||+++.|+..+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998654
No 236
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.39 E-value=9.6e-05 Score=55.71 Aligned_cols=27 Identities=33% Similarity=0.418 Sum_probs=22.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
++|..++|+|++|+|||||++.|.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999999853
No 237
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=97.39 E-value=9.9e-05 Score=62.39 Aligned_cols=29 Identities=34% Similarity=0.392 Sum_probs=22.6
Q ss_pred eEeeCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 97 LLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 97 l~v~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
++..+ .+.+|+|||||||||++.+|.-.+
T Consensus 19 i~f~~-~~~~i~G~NGsGKS~lleAi~~~l 47 (339)
T 3qkt_A 19 VEFKE-GINLIIGQNGSGKSSLLDAILVGL 47 (339)
T ss_dssp EECCS-EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EcCCC-CeEEEECCCCCCHHHHHHHHHHHh
Confidence 44444 478999999999999999985433
No 238
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.39 E-value=7.3e-05 Score=56.99 Aligned_cols=29 Identities=48% Similarity=0.548 Sum_probs=24.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccCCCeE
Q 030515 104 VIWITGLSGSGKSTLACALSQALHWRGKL 132 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gllp~~G~i 132 (176)
+++|.|++||||||+++.|...++..|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~ 30 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKK 30 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCe
Confidence 58999999999999999999887555654
No 239
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.37 E-value=7.3e-05 Score=59.95 Aligned_cols=45 Identities=22% Similarity=0.348 Sum_probs=29.4
Q ss_pred ecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeecc
Q 030515 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (176)
Q Consensus 93 ~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~ 142 (176)
+++++...+| +.|.||+|+||||++++|.+.+..+ .+.+++.++.
T Consensus 38 ~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~---~~~i~~~~~~ 82 (257)
T 1lv7_A 38 QKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP---FFTISGSDFV 82 (257)
T ss_dssp -----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC---EEEECSCSST
T ss_pred HHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC---EEEEeHHHHH
Confidence 3344444444 7899999999999999999976311 2367776654
No 240
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.37 E-value=3.7e-05 Score=58.77 Aligned_cols=28 Identities=36% Similarity=0.433 Sum_probs=24.4
Q ss_pred eeCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 99 QQKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 99 v~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
++.+.+++|+|++||||||+++.|...+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567789999999999999999998765
No 241
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.36 E-value=8.7e-05 Score=57.02 Aligned_cols=23 Identities=43% Similarity=0.579 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
+++|+|++||||||+++.|...+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 78999999999999999998854
No 242
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.36 E-value=7.7e-05 Score=65.72 Aligned_cols=33 Identities=18% Similarity=0.146 Sum_probs=31.8
Q ss_pred cceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 94 ~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
|+.+.+.+|+.++|+|++|+|||||++.|.+.+
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 899999999999999999999999999999987
No 243
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.34 E-value=0.0001 Score=55.23 Aligned_cols=25 Identities=44% Similarity=0.497 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 102 GCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 102 Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
=++++|+|++||||||+++.|...+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 3688999999999999999998865
No 244
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.32 E-value=0.00011 Score=62.82 Aligned_cols=41 Identities=29% Similarity=0.288 Sum_probs=31.9
Q ss_pred EeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeEEEEECCe
Q 030515 98 LQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGD 139 (176)
Q Consensus 98 ~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i~~~ldG~ 139 (176)
-+++|+++.|.|++|||||||+..+.... ...+.++ +++.+
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vl-yi~~E 98 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAA-FIDAE 98 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE-EEESS
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEE-EEECC
Confidence 36899999999999999999999888766 4444543 55544
No 245
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.32 E-value=7.3e-05 Score=57.64 Aligned_cols=34 Identities=26% Similarity=0.342 Sum_probs=29.5
Q ss_pred cceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHh
Q 030515 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQ 124 (176)
Q Consensus 90 ~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~g 124 (176)
.+++++|+..++.. ++|+|++|+|||||++.+.+
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhc
Confidence 57788888877775 57999999999999999986
No 246
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.31 E-value=8.2e-05 Score=56.49 Aligned_cols=24 Identities=46% Similarity=0.589 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 103 CVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 103 eiv~I~G~SGSGKSTLlr~L~gll 126 (176)
.+++|+|++||||||+++.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999998865
No 247
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.30 E-value=0.00011 Score=57.70 Aligned_cols=23 Identities=48% Similarity=0.515 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhccc
Q 030515 105 IWITGLSGSGKSTLACALSQALH 127 (176)
Q Consensus 105 v~I~G~SGSGKSTLlr~L~gllp 127 (176)
++|+||||||||||++.|....|
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 68999999999999998876544
No 248
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.30 E-value=0.00013 Score=55.72 Aligned_cols=34 Identities=29% Similarity=0.418 Sum_probs=19.9
Q ss_pred cceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHh
Q 030515 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQ 124 (176)
Q Consensus 90 ~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~g 124 (176)
.+++++++..++. .++|+|++|+|||||++.+.+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 4677888887776 458999999999999999987
No 249
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.29 E-value=9.7e-05 Score=55.23 Aligned_cols=23 Identities=35% Similarity=0.616 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
+++|+|++||||||+++.|...+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998865
No 250
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.28 E-value=5e-05 Score=62.06 Aligned_cols=35 Identities=26% Similarity=0.313 Sum_probs=27.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhccc-CCCeEEEEECC
Q 030515 103 CVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDG 138 (176)
Q Consensus 103 eiv~I~G~SGSGKSTLlr~L~gllp-~~G~i~~~ldG 138 (176)
..+.|.||+|+||||++++|.+.+. ..+.+. .++.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~-~~~~ 83 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMI-RIDM 83 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEE-EEEG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceE-Eeec
Confidence 5789999999999999999999884 445442 4443
No 251
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.27 E-value=0.00014 Score=57.03 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
+|-+++|+|++||||||+++.|...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998765
No 252
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.26 E-value=0.00014 Score=54.11 Aligned_cols=23 Identities=43% Similarity=0.641 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
+++|+|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999998865
No 253
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.26 E-value=0.00012 Score=61.10 Aligned_cols=27 Identities=33% Similarity=0.206 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
.++..++|+|++|+|||||+++|.+..
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 445589999999999999999999863
No 254
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.25 E-value=0.00015 Score=54.81 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 102 GCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 102 Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
+.+++|+|++||||||+++.|...+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998754
No 255
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.25 E-value=0.00016 Score=55.85 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
..+.+++|+|++||||||+++.|...+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 455689999999999999999998755
No 256
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.24 E-value=0.00013 Score=56.63 Aligned_cols=28 Identities=32% Similarity=0.289 Sum_probs=24.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcccCCC
Q 030515 103 CVIWITGLSGSGKSTLACALSQALHWRG 130 (176)
Q Consensus 103 eiv~I~G~SGSGKSTLlr~L~gllp~~G 130 (176)
.+++|+|+|||||||++..|.+.+...|
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g 32 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREG 32 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcC
Confidence 4789999999999999999999885445
No 257
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.24 E-value=0.00024 Score=62.02 Aligned_cols=37 Identities=27% Similarity=0.309 Sum_probs=29.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc-------------cCCCeEEEEECCeec
Q 030515 103 CVIWITGLSGSGKSTLACALSQAL-------------HWRGKLTYILDGDNC 141 (176)
Q Consensus 103 eiv~I~G~SGSGKSTLlr~L~gll-------------p~~G~i~~~ldG~~v 141 (176)
-.++|+|+||+|||||+++|.|.. +..|.+ .++|+.+
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i--~~~g~~~ 230 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEV--FIDGRKY 230 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEE--EETTEEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEE--EECCEEE
Confidence 368999999999999999999874 233555 7788765
No 258
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.23 E-value=9.1e-05 Score=65.05 Aligned_cols=43 Identities=19% Similarity=0.211 Sum_probs=36.8
Q ss_pred ccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCe
Q 030515 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGK 131 (176)
Q Consensus 89 ~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~ 131 (176)
...|+++..-+++|+++.|.|++|+||||++..++... +..|.
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~ 233 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNE 233 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSC
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCC
Confidence 35678887778999999999999999999999999987 55563
No 259
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.23 E-value=0.00018 Score=55.41 Aligned_cols=27 Identities=30% Similarity=0.430 Sum_probs=22.7
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
.+..+++|+|++||||||+++.|...+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345689999999999999999998654
No 260
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.21 E-value=0.00018 Score=56.80 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=22.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
.++.+++|+|++||||||+++.|...+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998654
No 261
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.20 E-value=0.00017 Score=56.17 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
.++|+|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999996644
No 262
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.18 E-value=0.00022 Score=57.38 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=23.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
.+.-+++|+|++||||||+++.|...+
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 445689999999999999999998865
No 263
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.17 E-value=0.00015 Score=56.86 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
++.+++|+|++||||||+++.|...+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999999998755
No 264
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.17 E-value=5.3e-05 Score=63.13 Aligned_cols=42 Identities=31% Similarity=0.455 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeecc
Q 030515 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~ 142 (176)
++-+++|.|+|||||||+++.|...+...|.-+..++.+++.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 456899999999999999999988664223211245555543
No 265
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.16 E-value=0.00016 Score=68.21 Aligned_cols=43 Identities=19% Similarity=0.289 Sum_probs=34.1
Q ss_pred eEeeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeecc
Q 030515 97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (176)
Q Consensus 97 l~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v~ 142 (176)
|.+++|+.+.|.||||||||||+++|++.++. ..+.+++.++.
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~---~~i~v~~~~l~ 275 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA---FFFLINGPEIM 275 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC---EEEEEEHHHHS
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC---cEEEEEchHhh
Confidence 46789999999999999999999999998732 12366665553
No 266
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.15 E-value=0.00022 Score=55.60 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
.++|+|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999996644
No 267
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.15 E-value=0.00019 Score=55.66 Aligned_cols=37 Identities=16% Similarity=0.175 Sum_probs=27.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEEC
Q 030515 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD 137 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ld 137 (176)
.+..+.|.||+|+||||+++.+...+...|..+++++
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~ 87 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP 87 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 5678899999999999999999887743333323444
No 268
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.14 E-value=0.00024 Score=52.78 Aligned_cols=23 Identities=35% Similarity=0.309 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
.++|+|++|+|||||++.+.+..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999853
No 269
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.10 E-value=0.00019 Score=59.40 Aligned_cols=40 Identities=20% Similarity=0.244 Sum_probs=30.4
Q ss_pred EeeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCee
Q 030515 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (176)
Q Consensus 98 ~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~ 140 (176)
.+.++..+.|.||+|+||||++++|.+.+. .+.+ .+++.+
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~-~~~i--~v~~~~ 84 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ-ANFI--SIKGPE 84 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTT-CEEE--EECHHH
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhC-CCEE--EEEhHH
Confidence 457788899999999999999999998762 2223 555443
No 270
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.09 E-value=0.00031 Score=56.51 Aligned_cols=27 Identities=26% Similarity=0.298 Sum_probs=23.3
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
.++-+++|+|++||||||+++.|...+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 467789999999999999999997643
No 271
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=97.09 E-value=0.00063 Score=57.83 Aligned_cols=38 Identities=29% Similarity=0.202 Sum_probs=32.1
Q ss_pred cCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHh
Q 030515 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQ 124 (176)
Q Consensus 86 ~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~g 124 (176)
+.....+|...+++ .|.-+.|+|+||+||||++..|.+
T Consensus 129 ~~~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 129 LARTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp TCEEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hccceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 34456788887877 788999999999999999998877
No 272
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.07 E-value=0.00027 Score=61.56 Aligned_cols=30 Identities=30% Similarity=0.354 Sum_probs=25.3
Q ss_pred eEeeCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 97 LLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 97 l~v~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
+.-.++.+++|+|+|||||||+++.|...+
T Consensus 253 ~~~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 253 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 444677899999999999999999987644
No 273
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.05 E-value=0.00028 Score=53.41 Aligned_cols=22 Identities=41% Similarity=0.557 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 030515 104 VIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gl 125 (176)
-++|+|++|+|||||++.+.+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999999985
No 274
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.05 E-value=0.00056 Score=57.99 Aligned_cols=43 Identities=21% Similarity=0.173 Sum_probs=32.4
Q ss_pred EeeCCeEEEEEcCCCCcHHHHHHHHHhc--ccC----CCeEEEEECCee
Q 030515 98 LQQKGCVIWITGLSGSGKSTLACALSQA--LHW----RGKLTYILDGDN 140 (176)
Q Consensus 98 ~v~~Geiv~I~G~SGSGKSTLlr~L~gl--lp~----~G~i~~~ldG~~ 140 (176)
-+++|+++.|.|++||||||++..++.. +|. .|.-+++++.+.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 4689999999999999999999988875 342 233334666554
No 275
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.02 E-value=0.00049 Score=54.85 Aligned_cols=32 Identities=34% Similarity=0.418 Sum_probs=27.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhcccCCCe
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGK 131 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~ 131 (176)
-+|.+++|.|++||||||+++.|...+...|.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~ 35 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGI 35 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTC
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 36889999999999999999999988866664
No 276
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.01 E-value=0.00061 Score=57.12 Aligned_cols=29 Identities=28% Similarity=0.229 Sum_probs=26.0
Q ss_pred EeeCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 98 LQQKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 98 ~v~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
-+++|+++.|.|++||||||++..++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 47899999999999999999999888754
No 277
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.01 E-value=0.0004 Score=52.06 Aligned_cols=22 Identities=36% Similarity=0.368 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 030515 104 VIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gl 125 (176)
.++|+|++|+|||||++.+.+.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999984
No 278
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.01 E-value=0.00046 Score=59.29 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=27.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccc------------CCCeEEEEECCeec
Q 030515 104 VIWITGLSGSGKSTLACALSQALH------------WRGKLTYILDGDNC 141 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gllp------------~~G~i~~~ldG~~v 141 (176)
+++|+|++|||||||+++|.+... ..|.+ .++|..+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i--~~~g~~v 228 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAI--PINNRKI 228 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEE--EETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEE--EECCEEE
Confidence 489999999999999999998752 22555 7777654
No 279
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.00 E-value=0.00051 Score=58.64 Aligned_cols=30 Identities=30% Similarity=0.360 Sum_probs=24.1
Q ss_pred cceeEeeCCeEEEEEcCCCCcHHHHHHHHHh
Q 030515 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQ 124 (176)
Q Consensus 94 ~isl~v~~Geiv~I~G~SGSGKSTLlr~L~g 124 (176)
+..++..+ .+.+|+|+|||||||++.+|.=
T Consensus 18 ~~~i~f~~-gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 18 NSRIKFEK-GIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEECCS-EEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEecCC-CeEEEECCCCCCHHHHHHHHHH
Confidence 44555555 5789999999999999999874
No 280
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.99 E-value=0.00045 Score=53.12 Aligned_cols=28 Identities=29% Similarity=0.419 Sum_probs=23.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcccCCC
Q 030515 103 CVIWITGLSGSGKSTLACALSQALHWRG 130 (176)
Q Consensus 103 eiv~I~G~SGSGKSTLlr~L~gllp~~G 130 (176)
..+.|.|++|+|||||+++|...+...|
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~ 82 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRN 82 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 5778999999999999999998874333
No 281
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.98 E-value=0.00044 Score=56.51 Aligned_cols=34 Identities=32% Similarity=0.372 Sum_probs=25.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCee
Q 030515 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (176)
Q Consensus 103 eiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~ 140 (176)
.+++|+|++||||||+++.|...+ .|.. .++.+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~--~~~~--~i~~D~ 36 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN--PGFY--NINRDD 36 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS--TTEE--EECHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC--CCcE--EecccH
Confidence 578999999999999999998732 2444 555443
No 282
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.98 E-value=0.0004 Score=61.39 Aligned_cols=32 Identities=31% Similarity=0.360 Sum_probs=28.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeE
Q 030515 101 KGCVIWITGLSGSGKSTLACALSQAL-HWRGKL 132 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i 132 (176)
++.+++++|++||||||++..|+..+ +..+++
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kV 128 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKV 128 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 58999999999999999999999988 555566
No 283
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.98 E-value=0.00042 Score=54.41 Aligned_cols=26 Identities=38% Similarity=0.456 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
.-.+++|+|.+||||||+++.|...+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 34678999999999999999998753
No 284
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.96 E-value=0.00036 Score=54.80 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
++-.++|+|++||||||+++.|...+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998755
No 285
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.96 E-value=0.00042 Score=55.71 Aligned_cols=29 Identities=38% Similarity=0.423 Sum_probs=25.4
Q ss_pred EeeCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 98 LQQKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 98 ~v~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
...+..+++|+||+||||+|.++.|...+
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45778899999999999999999998754
No 286
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.96 E-value=0.00018 Score=61.64 Aligned_cols=35 Identities=26% Similarity=0.217 Sum_probs=28.9
Q ss_pred cCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 86 ~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
++...++++++|.+ +|+|++|+|||||++.|.+..
T Consensus 27 ~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 27 VHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp HHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred hCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 55556777888776 899999999999999987754
No 287
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.95 E-value=0.00045 Score=56.95 Aligned_cols=24 Identities=46% Similarity=0.576 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHh
Q 030515 101 KGCVIWITGLSGSGKSTLACALSQ 124 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLlr~L~g 124 (176)
+..+++|+|++||||||+++.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999984
No 288
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.89 E-value=0.00049 Score=54.40 Aligned_cols=23 Identities=35% Similarity=0.406 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
+++|+|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998754
No 289
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.88 E-value=0.00018 Score=55.06 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
.+.|.|++|+||||+++.+...+
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999998866
No 290
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.87 E-value=0.00059 Score=50.48 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
.+..+.|.|++|+||||+++.+...+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 44567899999999999999998876
No 291
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.87 E-value=0.00075 Score=56.28 Aligned_cols=38 Identities=13% Similarity=0.063 Sum_probs=28.5
Q ss_pred eCCe--EEEEEcCCCCcHHHHHHHHHhcccCC-CeEEEEEC
Q 030515 100 QKGC--VIWITGLSGSGKSTLACALSQALHWR-GKLTYILD 137 (176)
Q Consensus 100 ~~Ge--iv~I~G~SGSGKSTLlr~L~gllp~~-G~i~~~ld 137 (176)
..+. .+.|.||+|+||||+++.+.+.+... +...++++
T Consensus 40 ~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 40 PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 3446 78999999999999999999988433 33333555
No 292
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.87 E-value=0.00056 Score=54.26 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=23.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
.++..++|+|++||||||+++.|...+
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345678999999999999999998755
No 293
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.87 E-value=0.00047 Score=53.63 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 102 GCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 102 Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
+.+++|+|++||||||+++.|...+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999998753
No 294
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.86 E-value=0.0005 Score=53.67 Aligned_cols=23 Identities=26% Similarity=0.245 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
.++|+|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36899999999999999998754
No 295
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.86 E-value=0.0004 Score=57.54 Aligned_cols=39 Identities=23% Similarity=0.263 Sum_probs=29.3
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhcc-cCC--CeEEEEECC
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQAL-HWR--GKLTYILDG 138 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~--G~i~~~ldG 138 (176)
..+..+.|.|++|+|||||++.+.+.+ +.. +...++++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~ 84 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT 84 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC
Confidence 456788999999999999999999987 332 333335553
No 296
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.86 E-value=0.00049 Score=60.18 Aligned_cols=27 Identities=33% Similarity=0.346 Sum_probs=23.8
Q ss_pred eeCCeEEEEEcCCCCcHHHHHHHHHhc
Q 030515 99 QQKGCVIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 99 v~~Geiv~I~G~SGSGKSTLlr~L~gl 125 (176)
+..+..++|+|+||+|||||+++|.+.
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 466778899999999999999999987
No 297
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.84 E-value=0.00051 Score=55.85 Aligned_cols=31 Identities=35% Similarity=0.475 Sum_probs=26.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhcccCCC
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQALHWRG 130 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G 130 (176)
.+|.+++|.|++||||||+++.|...+...|
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~ 55 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQQNG 55 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 3688999999999999999999998885444
No 298
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.83 E-value=0.00077 Score=60.76 Aligned_cols=46 Identities=20% Similarity=0.130 Sum_probs=36.1
Q ss_pred cceeEeeCCeEEEEEcCCCCcHHHHHHHHHh-cc--cCCCeEE-EEECCe
Q 030515 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQ-AL--HWRGKLT-YILDGD 139 (176)
Q Consensus 94 ~isl~v~~Geiv~I~G~SGSGKSTLlr~L~g-ll--p~~G~i~-~~ldG~ 139 (176)
.+++++.++..+.|.|.+||||||++++|.. ++ ++++++. |.+|.+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK 208 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK 208 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence 5678888999999999999999999999876 33 4667663 445644
No 299
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.80 E-value=0.00059 Score=54.49 Aligned_cols=31 Identities=32% Similarity=0.436 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhcccCCCe
Q 030515 101 KGCVIWITGLSGSGKSTLACALSQALHWRGK 131 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~ 131 (176)
+|.+++|.|++||||||.++.|...+...|.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~ 32 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGI 32 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 4789999999999999999999988865553
No 300
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.79 E-value=0.00097 Score=49.41 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 102 GCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 102 Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
+..+.|.|++|+||||+++.+...+
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999998876
No 301
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.77 E-value=0.00079 Score=54.78 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
++..+.|.||+|+||||+++++.+.+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 46678999999999999999999865
No 302
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.77 E-value=0.00087 Score=53.08 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
.++|+|++|+|||||+++|.+..
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 47899999999999999999876
No 303
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.77 E-value=0.00046 Score=61.58 Aligned_cols=35 Identities=34% Similarity=0.438 Sum_probs=28.7
Q ss_pred cceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 90 ~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
..++++++.+.+| +.|.||+|+||||++++|.+..
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence 3455666777777 7799999999999999999865
No 304
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.76 E-value=0.00089 Score=57.47 Aligned_cols=28 Identities=29% Similarity=0.487 Sum_probs=24.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhccc
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gllp 127 (176)
.++.+++|+||+|||||||+..|+..++
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 3567899999999999999999998764
No 305
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.74 E-value=0.00074 Score=57.70 Aligned_cols=32 Identities=22% Similarity=0.070 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeE
Q 030515 101 KGCVIWITGLSGSGKSTLACALSQAL-HWRGKL 132 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i 132 (176)
.+.-++|+|+|||||||+++.|...+ +..+++
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~ 66 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRV 66 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEE
Confidence 45567899999999999999999877 455555
No 306
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.73 E-value=0.00087 Score=54.09 Aligned_cols=33 Identities=30% Similarity=0.360 Sum_probs=27.6
Q ss_pred EeeCCeEEEEEcCCCCcHHHHHHHHHhcccC-CC
Q 030515 98 LQQKGCVIWITGLSGSGKSTLACALSQALHW-RG 130 (176)
Q Consensus 98 ~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~-~G 130 (176)
.-++|.+++|.|++||||||+++.|...+.. .|
T Consensus 17 ~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g 50 (223)
T 3ld9_A 17 QGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYG 50 (223)
T ss_dssp --CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHC
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHhhccC
Confidence 3567999999999999999999999988754 55
No 307
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.71 E-value=0.00096 Score=53.05 Aligned_cols=27 Identities=26% Similarity=0.210 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhccc
Q 030515 101 KGCVIWITGLSGSGKSTLACALSQALH 127 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLlr~L~gllp 127 (176)
+|.+++|.|..||||||+++.|...++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 467899999999999999999988663
No 308
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.70 E-value=0.0006 Score=56.46 Aligned_cols=36 Identities=28% Similarity=0.255 Sum_probs=26.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEEC
Q 030515 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD 137 (176)
Q Consensus 102 Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ld 137 (176)
+..+.|.||+|+||||+++++...+...|..+++++
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~ 72 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS 72 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 356789999999999999999998743233223454
No 309
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.65 E-value=0.001 Score=57.04 Aligned_cols=41 Identities=29% Similarity=0.388 Sum_probs=31.4
Q ss_pred eeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCe
Q 030515 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139 (176)
Q Consensus 99 v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~ 139 (176)
+++|+++.|.|++|||||||+..+.......|..+.+++.+
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E 100 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 100 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 78999999999999999999998887663334333366653
No 310
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.65 E-value=0.001 Score=50.05 Aligned_cols=24 Identities=33% Similarity=0.373 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 103 CVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 103 eiv~I~G~SGSGKSTLlr~L~gll 126 (176)
-.++|+|++|+|||||++.+.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 367899999999999999998864
No 311
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.65 E-value=0.00093 Score=57.32 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhccc
Q 030515 103 CVIWITGLSGSGKSTLACALSQALH 127 (176)
Q Consensus 103 eiv~I~G~SGSGKSTLlr~L~gllp 127 (176)
.+++|+|++||||||+++.|...++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4789999999999999999988764
No 312
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.64 E-value=0.00072 Score=54.62 Aligned_cols=31 Identities=29% Similarity=0.400 Sum_probs=23.5
Q ss_pred eeCCeEEEEEcCCCCcHHHHHHHHHhcccCC
Q 030515 99 QQKGCVIWITGLSGSGKSTLACALSQALHWR 129 (176)
Q Consensus 99 v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~ 129 (176)
..+|.+++|.|++||||||+++.|...+...
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 3578999999999999999999998877433
No 313
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.63 E-value=0.0011 Score=48.24 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
-++|+|++|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 36899999999999999998753
No 314
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.62 E-value=0.0011 Score=53.51 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
.++.-+.|.||+|+||||++++++..+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 455668899999999999999998865
No 315
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.60 E-value=0.0008 Score=54.30 Aligned_cols=28 Identities=32% Similarity=0.226 Sum_probs=23.8
Q ss_pred eeCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 99 QQKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 99 v~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
..++.+++|.|+.||||||+++.|...+
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3677899999999999999999888766
No 316
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.60 E-value=0.0012 Score=47.70 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 030515 104 VIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gl 125 (176)
-++|+|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999888754
No 317
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.60 E-value=0.0011 Score=47.71 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
-++++|.+|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999997653
No 318
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.60 E-value=0.0012 Score=48.52 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
-++|+|++|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 36899999999999999998753
No 319
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.59 E-value=0.0012 Score=47.72 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
-++++|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999998753
No 320
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.59 E-value=0.0018 Score=51.94 Aligned_cols=36 Identities=33% Similarity=0.201 Sum_probs=27.6
Q ss_pred cceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 90 ~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
..++..-++ -.|..++|+|+||||||||+..|....
T Consensus 23 ~~lHa~~v~-~~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 23 RSMHGVLVD-IYGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CCEESEEEE-ETTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeeEEEEE-ECCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 345554444 467889999999999999999987754
No 321
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.58 E-value=0.0015 Score=48.07 Aligned_cols=28 Identities=29% Similarity=0.384 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhcccC
Q 030515 101 KGCVIWITGLSGSGKSTLACALSQALHW 128 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLlr~L~gllp~ 128 (176)
.+.-+.|.|++|+|||+++++|....+.
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 3445789999999999999999987643
No 322
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.58 E-value=0.0013 Score=47.70 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 030515 104 VIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gl 125 (176)
-++|+|.+|+|||||++.+.+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3689999999999999999764
No 323
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.58 E-value=0.0015 Score=55.75 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhccc
Q 030515 102 GCVIWITGLSGSGKSTLACALSQALH 127 (176)
Q Consensus 102 Geiv~I~G~SGSGKSTLlr~L~gllp 127 (176)
+.+++|+||+|||||||+..|+..++
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 45789999999999999999988663
No 324
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.57 E-value=0.0013 Score=56.03 Aligned_cols=25 Identities=40% Similarity=0.596 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhccc
Q 030515 103 CVIWITGLSGSGKSTLACALSQALH 127 (176)
Q Consensus 103 eiv~I~G~SGSGKSTLlr~L~gllp 127 (176)
.+++|+||+||||||+++.|+..++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999998663
No 325
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.57 E-value=0.0018 Score=54.13 Aligned_cols=48 Identities=13% Similarity=0.157 Sum_probs=35.4
Q ss_pred ccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEE
Q 030515 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL 136 (176)
Q Consensus 89 ~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~l 136 (176)
...|+++.--+++|+++.|.|++|+||||++..++...-..|..+.++
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~ 102 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLH 102 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEE
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 345666665589999999999999999999998886553344333344
No 326
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.56 E-value=0.0013 Score=47.83 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 030515 104 VIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gl 125 (176)
-++|+|.+|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999873
No 327
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.56 E-value=0.003 Score=49.77 Aligned_cols=26 Identities=35% Similarity=0.325 Sum_probs=22.1
Q ss_pred eeCCeEEEEEcCCCCcHHHHHHHHHh
Q 030515 99 QQKGCVIWITGLSGSGKSTLACALSQ 124 (176)
Q Consensus 99 v~~Geiv~I~G~SGSGKSTLlr~L~g 124 (176)
.-.|.-+.|+|+||+||||++..|..
T Consensus 13 ~v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 13 VIDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 35677889999999999999987765
No 328
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.56 E-value=0.0017 Score=47.95 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhc
Q 030515 101 KGCVIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLlr~L~gl 125 (176)
+.-.++|+|++|+|||||++.+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4456799999999999999999774
No 329
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.56 E-value=0.0014 Score=51.83 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=22.7
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
..+.-+.|.||+|+||||+++++...+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344557899999999999999998865
No 330
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.55 E-value=0.0013 Score=52.07 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
+++|+||+||||+|.++.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998764
No 331
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.55 E-value=0.0014 Score=47.73 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhcc
Q 030515 105 IWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 105 v~I~G~SGSGKSTLlr~L~gll 126 (176)
++|+|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6899999999999999987643
No 332
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.54 E-value=0.0011 Score=48.44 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhcc
Q 030515 105 IWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 105 v~I~G~SGSGKSTLlr~L~gll 126 (176)
++|+|.+|+|||||++.+.+..
T Consensus 5 i~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEECCCCCCHHHHHHHHcCcc
Confidence 6899999999999999997754
No 333
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.53 E-value=0.0014 Score=47.70 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 36899999999999999998754
No 334
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.53 E-value=0.0014 Score=48.26 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
-++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999887643
No 335
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.52 E-value=0.0015 Score=47.78 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 030515 104 VIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gl 125 (176)
-++|+|.+|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4689999999999999999865
No 336
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.52 E-value=0.0014 Score=47.96 Aligned_cols=21 Identities=43% Similarity=0.575 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhc
Q 030515 105 IWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 105 v~I~G~SGSGKSTLlr~L~gl 125 (176)
++|+|++|+|||||++.+.+.
T Consensus 5 i~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999754
No 337
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.51 E-value=0.0015 Score=47.47 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 030515 104 VIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gl 125 (176)
-++|+|.+|+|||||++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3689999999999999999764
No 338
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.51 E-value=0.0014 Score=47.75 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhcc
Q 030515 105 IWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 105 v~I~G~SGSGKSTLlr~L~gll 126 (176)
++|+|++|+|||||++.+.+.-
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 6899999999999999997653
No 339
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.49 E-value=0.0016 Score=48.04 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 030515 104 VIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gl 125 (176)
-++|+|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3689999999999999999764
No 340
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.48 E-value=0.002 Score=57.15 Aligned_cols=40 Identities=28% Similarity=0.454 Sum_probs=31.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCee
Q 030515 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~ 140 (176)
++.+++++|++|+||||++..|+..+...|.-+..++.+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~ 138 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDT 138 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 5789999999999999999999988855665433555443
No 341
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.48 E-value=0.0014 Score=53.25 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
.++|+|++|||||||++.|.|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999875
No 342
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.47 E-value=0.0015 Score=48.05 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 030515 104 VIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gl 125 (176)
-++|+|.+|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998775
No 343
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.46 E-value=0.00063 Score=56.24 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
.+.|.||+|+||||+++++.+.+
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999986
No 344
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.45 E-value=0.0015 Score=52.31 Aligned_cols=32 Identities=34% Similarity=0.429 Sum_probs=27.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhcccCCCe
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGK 131 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~ 131 (176)
.+|.+++|.|++||||||+++.|...+...+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~ 34 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQPNCK 34 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcccce
Confidence 46889999999999999999999988754433
No 345
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.45 E-value=0.0017 Score=48.43 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 030515 104 VIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gl 125 (176)
-++|+|++|+|||||++.|.+.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999876
No 346
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.44 E-value=0.0017 Score=48.55 Aligned_cols=23 Identities=26% Similarity=0.079 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
-++|+|.+|+|||||++.+.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 36899999999999999998865
No 347
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.44 E-value=0.0014 Score=48.20 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 030515 104 VIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gl 125 (176)
-++|+|.+|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999999765
No 348
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.44 E-value=0.002 Score=51.93 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=26.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEE
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL 136 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~l 136 (176)
.+|.++.++|+.|+||||++..+.......|.-++++
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 5689999999999999998876666555455433344
No 349
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.43 E-value=0.0015 Score=48.82 Aligned_cols=23 Identities=35% Similarity=0.302 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
.++|+|.+|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 57899999999999999998753
No 350
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.43 E-value=0.0018 Score=47.08 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 030515 104 VIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gl 125 (176)
-++|+|.+|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3689999999999999999863
No 351
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.42 E-value=0.0017 Score=48.20 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 030515 104 VIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gl 125 (176)
-++|+|++|+|||||++.+.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999999864
No 352
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.41 E-value=0.0015 Score=49.04 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhc
Q 030515 103 CVIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 103 eiv~I~G~SGSGKSTLlr~L~gl 125 (176)
-.++|+|++|+|||||++.+.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999875
No 353
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.41 E-value=0.0012 Score=52.30 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=22.0
Q ss_pred eeCCeEEEEEcCCCCcHHHHHHHHHh
Q 030515 99 QQKGCVIWITGLSGSGKSTLACALSQ 124 (176)
Q Consensus 99 v~~Geiv~I~G~SGSGKSTLlr~L~g 124 (176)
+.+|+.+++.|++||||||++..+.-
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 46789999999999999998776543
No 354
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.40 E-value=0.0019 Score=48.00 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
-++|+|++|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999997643
No 355
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.40 E-value=0.0026 Score=49.26 Aligned_cols=25 Identities=32% Similarity=0.210 Sum_probs=20.2
Q ss_pred CCeEEEEEcCCCCcHHHHH-HHHHhc
Q 030515 101 KGCVIWITGLSGSGKSTLA-CALSQA 125 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLl-r~L~gl 125 (176)
+|.+++|+|+.||||||++ +.+.++
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999998 444443
No 356
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.39 E-value=0.0025 Score=49.79 Aligned_cols=25 Identities=32% Similarity=0.570 Sum_probs=22.6
Q ss_pred eeCCeEEEEEcCCCCcHHHHHHHHH
Q 030515 99 QQKGCVIWITGLSGSGKSTLACALS 123 (176)
Q Consensus 99 v~~Geiv~I~G~SGSGKSTLlr~L~ 123 (176)
+++|+++.|.|++|+|||+++..++
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 6899999999999999999987654
No 357
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.38 E-value=0.002 Score=47.44 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 030515 104 VIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gl 125 (176)
-++|+|++|+|||||++.+.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3689999999999999998764
No 358
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.38 E-value=0.002 Score=47.13 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhc
Q 030515 103 CVIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 103 eiv~I~G~SGSGKSTLlr~L~gl 125 (176)
--++|+|++|+|||||++.+.+-
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999999653
No 359
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.37 E-value=0.0024 Score=51.17 Aligned_cols=36 Identities=22% Similarity=0.177 Sum_probs=26.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEEC
Q 030515 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD 137 (176)
Q Consensus 102 Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ld 137 (176)
+.-+.|.|++|+|||+++++|....+..+...+.++
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~ 64 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEE
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEe
Confidence 345789999999999999999998754332222454
No 360
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.37 E-value=0.0015 Score=49.19 Aligned_cols=28 Identities=32% Similarity=0.404 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc-----cCCC
Q 030515 103 CVIWITGLSGSGKSTLACALSQAL-----HWRG 130 (176)
Q Consensus 103 eiv~I~G~SGSGKSTLlr~L~gll-----p~~G 130 (176)
-.++|+|++|+|||||++.+.+.. |+.|
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g 49 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASEDISHITPTQG 49 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCSCCEEEEEETT
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcccCcCC
Confidence 357899999999999999998752 4566
No 361
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.36 E-value=0.0017 Score=48.40 Aligned_cols=22 Identities=41% Similarity=0.431 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhcc
Q 030515 105 IWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 105 v~I~G~SGSGKSTLlr~L~gll 126 (176)
++|+|.+|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999998754
No 362
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.34 E-value=0.0021 Score=47.56 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 030515 104 VIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gl 125 (176)
-++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 4689999999999999999764
No 363
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.34 E-value=0.0021 Score=48.48 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
-++|+|.+|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 36899999999999999998743
No 364
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.33 E-value=0.0022 Score=46.66 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhc
Q 030515 105 IWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 105 v~I~G~SGSGKSTLlr~L~gl 125 (176)
++|+|.+|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999998653
No 365
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.33 E-value=0.0021 Score=47.25 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 030515 104 VIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gl 125 (176)
-++|+|++|+|||||++.+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4689999999999999999754
No 366
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.32 E-value=0.0027 Score=52.76 Aligned_cols=28 Identities=21% Similarity=0.210 Sum_probs=24.9
Q ss_pred EeeCCeEEEEEcCCCCcHHHHHHHHHhc
Q 030515 98 LQQKGCVIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 98 ~v~~Geiv~I~G~SGSGKSTLlr~L~gl 125 (176)
-+++|+++.|.|++||||||++..++..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999999999999888753
No 367
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.32 E-value=0.0022 Score=47.08 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
-++|+|.+|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 46899999999999999998754
No 368
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.31 E-value=0.0022 Score=47.33 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
-++|+|.+|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999987643
No 369
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.31 E-value=0.0024 Score=54.39 Aligned_cols=26 Identities=35% Similarity=0.496 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhccc
Q 030515 102 GCVIWITGLSGSGKSTLACALSQALH 127 (176)
Q Consensus 102 Geiv~I~G~SGSGKSTLlr~L~gllp 127 (176)
+.+++|+||+|||||||+..|+..++
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 45789999999999999999987653
No 370
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.29 E-value=0.0022 Score=57.64 Aligned_cols=31 Identities=32% Similarity=0.601 Sum_probs=25.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhcccCCC
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQALHWRG 130 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G 130 (176)
....+++++|++||||||+++.|...+...|
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 4557899999999999999999988774333
No 371
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.29 E-value=0.0024 Score=47.21 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
-++|+|++|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 36899999999999999998753
No 372
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.29 E-value=0.0021 Score=52.26 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
.+..+.|.||+|+|||++++++...+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 44568999999999999999998877
No 373
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.28 E-value=0.0023 Score=47.93 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
-++++|.+|+|||||++.|.+..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 46899999999999999997653
No 374
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.28 E-value=0.0023 Score=49.25 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999998865
No 375
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.26 E-value=0.00073 Score=54.15 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhcc
Q 030515 105 IWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 105 v~I~G~SGSGKSTLlr~L~gll 126 (176)
+.|.||+|+|||+++++|...+
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 6799999999999999998864
No 376
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.24 E-value=0.0026 Score=49.12 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 102 GCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 102 Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
--.++|+|.+|+|||||+..|.+.+
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999888765
No 377
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.23 E-value=0.0024 Score=47.47 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
-++|+|++|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 46899999999999999987653
No 378
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.23 E-value=0.0024 Score=51.36 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
.++|+|.+|+|||||++.|.+.-
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998854
No 379
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.23 E-value=0.0025 Score=48.14 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 030515 104 VIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gl 125 (176)
-++|+|++|+|||||++.+.+.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4689999999999999999764
No 380
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.22 E-value=0.0019 Score=55.21 Aligned_cols=47 Identities=15% Similarity=0.111 Sum_probs=35.1
Q ss_pred cceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEE
Q 030515 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL 136 (176)
Q Consensus 90 ~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~l 136 (176)
..|+.+.--+++|+++.|.|++|+||||++..++......|..+.++
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~f 80 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVF 80 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEE
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 44555544579999999999999999999999888764344433344
No 381
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.22 E-value=0.0043 Score=53.55 Aligned_cols=22 Identities=45% Similarity=0.465 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 030515 103 CVIWITGLSGSGKSTLACALSQ 124 (176)
Q Consensus 103 eiv~I~G~SGSGKSTLlr~L~g 124 (176)
..++|+|.+|+|||||+++|.+
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~ 24 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTK 24 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 4579999999999999999988
No 382
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.22 E-value=0.0018 Score=53.77 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=23.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
..+..+.|.||+|+||||+++.+...+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 455678899999999999999999877
No 383
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.20 E-value=0.0028 Score=46.95 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 030515 104 VIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gl 125 (176)
-++|+|.+|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4689999999999999988753
No 384
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.20 E-value=0.0024 Score=52.66 Aligned_cols=27 Identities=22% Similarity=0.194 Sum_probs=23.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
+.+..+.|.||+|+|||+++++|+..+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 445567788999999999999999876
No 385
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.19 E-value=0.0028 Score=47.99 Aligned_cols=21 Identities=33% Similarity=0.290 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 030515 104 VIWITGLSGSGKSTLACALSQ 124 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~g 124 (176)
-++|+|.+|+|||||++.+.+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 368999999999999966554
No 386
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.19 E-value=0.0024 Score=48.24 Aligned_cols=22 Identities=36% Similarity=0.637 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhcc
Q 030515 105 IWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 105 v~I~G~SGSGKSTLlr~L~gll 126 (176)
+.|.|++|+||||+++.+...+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998865
No 387
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.18 E-value=0.0028 Score=47.49 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
-++|+|++|+|||||++.+.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999998753
No 388
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.17 E-value=0.0028 Score=47.69 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 030515 104 VIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gl 125 (176)
-++|+|.+|+|||||++.+.+.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4789999999999999999773
No 389
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.17 E-value=0.0029 Score=47.98 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
-++|+|.+|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999987753
No 390
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.17 E-value=0.0029 Score=47.59 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
-++|+|++|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 36899999999999999997653
No 391
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.16 E-value=0.0015 Score=48.47 Aligned_cols=24 Identities=42% Similarity=0.560 Sum_probs=20.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHh
Q 030515 101 KGCVIWITGLSGSGKSTLACALSQ 124 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLlr~L~g 124 (176)
+.--++|+|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 344679999999999999999874
No 392
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.16 E-value=0.0028 Score=55.71 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=23.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
....+++++|++||||||+++.|...+
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 445688999999999999999998876
No 393
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.16 E-value=0.0028 Score=47.56 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 030515 104 VIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gl 125 (176)
-++|+|++|+|||||++.+.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999999775
No 394
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.13 E-value=0.0031 Score=46.85 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 030515 104 VIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gl 125 (176)
-++|+|.+|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3689999999999999998865
No 395
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.13 E-value=0.0032 Score=53.38 Aligned_cols=32 Identities=41% Similarity=0.427 Sum_probs=25.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhcccCCCe
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGK 131 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~ 131 (176)
.+.-+++|+|.+|+||||++..|...+...|.
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~ 108 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGH 108 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCC
Confidence 34568999999999999999999887744443
No 396
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.13 E-value=0.0032 Score=47.34 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 030515 104 VIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gl 125 (176)
-++|+|.+|+|||||++.+.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4689999999999999998754
No 397
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.12 E-value=0.003 Score=47.78 Aligned_cols=22 Identities=32% Similarity=0.641 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 030515 104 VIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gl 125 (176)
-++|+|++|+|||||++.+.+.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999998764
No 398
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.11 E-value=0.001 Score=62.73 Aligned_cols=43 Identities=19% Similarity=0.243 Sum_probs=33.5
Q ss_pred eeEeeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeec
Q 030515 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (176)
Q Consensus 96 sl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v 141 (176)
++.+.++..+.|.||||+|||||+++|++.+. .+.+ .+++..+
T Consensus 505 ~~~~~~~~~vLL~GppGtGKT~Lakala~~~~-~~~i--~v~~~~l 547 (806)
T 1ypw_A 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ-ANFI--SIKGPEL 547 (806)
T ss_dssp CCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT-CCCC--CCCCSSS
T ss_pred hcCCCCCceeEEECCCCCCHHHHHHHHHHHhC-CCEE--EEechHh
Confidence 55678899999999999999999999999872 2233 5555554
No 399
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.11 E-value=0.003 Score=47.19 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhc
Q 030515 101 KGCVIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLlr~L~gl 125 (176)
+.--++|+|++|+|||||++.+.+.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3446799999999999999999764
No 400
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.10 E-value=0.0032 Score=47.75 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999997753
No 401
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.10 E-value=0.004 Score=45.96 Aligned_cols=24 Identities=17% Similarity=0.129 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 103 CVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 103 eiv~I~G~SGSGKSTLlr~L~gll 126 (176)
--++|+|.+|+|||||++.+.+..
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 347899999999999999987643
No 402
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.09 E-value=0.0031 Score=55.42 Aligned_cols=25 Identities=44% Similarity=0.606 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhccc
Q 030515 103 CVIWITGLSGSGKSTLACALSQALH 127 (176)
Q Consensus 103 eiv~I~G~SGSGKSTLlr~L~gllp 127 (176)
.+++|+||+|||||||+..|...++
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 4789999999999999999987664
No 403
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.09 E-value=0.0034 Score=54.80 Aligned_cols=42 Identities=19% Similarity=0.170 Sum_probs=32.9
Q ss_pred cceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhccc-CCCe
Q 030515 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGK 131 (176)
Q Consensus 90 ~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp-~~G~ 131 (176)
..|+.+.--+++|+++.|.|++|+||||++..++.... ..|.
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~ 230 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGV 230 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCC
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCC
Confidence 34555544479999999999999999999999888763 3453
No 404
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.08 E-value=0.0033 Score=46.64 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 030515 104 VIWITGLSGSGKSTLACALSQ 124 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~g 124 (176)
-++|+|.+|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 468999999999999999874
No 405
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.07 E-value=0.0034 Score=51.60 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
.++|+|.+|+|||||++.|.+..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 57999999999999999999853
No 406
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.07 E-value=0.0043 Score=51.90 Aligned_cols=27 Identities=33% Similarity=0.303 Sum_probs=23.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
.++.-+.|.||+|+|||+++++++..+
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 345667899999999999999999865
No 407
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.07 E-value=0.0034 Score=47.34 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 36899999999999999998643
No 408
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.07 E-value=0.0035 Score=46.87 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
-++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999997653
No 409
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.07 E-value=0.0032 Score=47.96 Aligned_cols=24 Identities=25% Similarity=0.291 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 103 CVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 103 eiv~I~G~SGSGKSTLlr~L~gll 126 (176)
--++|+|.+|+|||||++.+.+..
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC
Confidence 357899999999999999998754
No 410
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.06 E-value=0.0023 Score=49.01 Aligned_cols=22 Identities=41% Similarity=0.524 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 030515 104 VIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gl 125 (176)
-++|+|.+|+|||||++.+.+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999999653
No 411
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.05 E-value=0.0037 Score=50.35 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=22.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
.....+.|.||+|+|||++++++...+
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 344567899999999999999998864
No 412
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.05 E-value=0.0028 Score=51.15 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 102 GCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 102 Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
+.-+.|.||+|+|||++++++...+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4457899999999999999999876
No 413
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.04 E-value=0.0034 Score=47.36 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
-++|+|.+|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 46899999999999999988754
No 414
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=96.03 E-value=0.006 Score=51.73 Aligned_cols=38 Identities=32% Similarity=0.257 Sum_probs=28.2
Q ss_pred cCcccceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHh
Q 030515 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQ 124 (176)
Q Consensus 86 ~~~~~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~g 124 (176)
+.....+|..-+++ .|.-+.|+|+||+||||++..|..
T Consensus 132 la~~~~~H~~~v~~-~g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 132 FATVAQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp TCCCEEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred hhhcceeEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 34445667654444 577889999999999999977654
No 415
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.03 E-value=0.0036 Score=49.12 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 103 CVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 103 eiv~I~G~SGSGKSTLlr~L~gll 126 (176)
-+++|.|+.||||||+.+.|+..+
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998876
No 416
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.03 E-value=0.0032 Score=47.35 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 103 CVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 103 eiv~I~G~SGSGKSTLlr~L~gll 126 (176)
-.++|+|.+|+|||||++.+.+..
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999998743
No 417
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.02 E-value=0.0034 Score=50.11 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhc
Q 030515 103 CVIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 103 eiv~I~G~SGSGKSTLlr~L~gl 125 (176)
-.++|+|.+|+|||||++.|.+.
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 35799999999999999999874
No 418
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.02 E-value=0.0035 Score=47.75 Aligned_cols=23 Identities=35% Similarity=0.432 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999997643
No 419
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.01 E-value=0.0038 Score=47.25 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhc
Q 030515 103 CVIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 103 eiv~I~G~SGSGKSTLlr~L~gl 125 (176)
--++|+|.+|+|||||++.+.+.
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 34789999999999999998765
No 420
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.01 E-value=0.0036 Score=46.94 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhc
Q 030515 102 GCVIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 102 Geiv~I~G~SGSGKSTLlr~L~gl 125 (176)
.--++|+|.+|+|||||++.+.+-
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999999853
No 421
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.01 E-value=0.0031 Score=47.80 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhcc
Q 030515 105 IWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 105 v~I~G~SGSGKSTLlr~L~gll 126 (176)
++|+|.+|+|||||++.+.+..
T Consensus 29 i~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC--
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6899999999999999997643
No 422
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.01 E-value=0.0029 Score=51.43 Aligned_cols=22 Identities=41% Similarity=0.495 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 030515 104 VIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gl 125 (176)
.++|+|.+|+|||||++.|.+.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999998664
No 423
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.00 E-value=0.0038 Score=53.74 Aligned_cols=39 Identities=28% Similarity=0.348 Sum_probs=29.7
Q ss_pred eeCCeEEEEEcCCCCcHHHHHHHHHhccc-CCCeEEEEECC
Q 030515 99 QQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDG 138 (176)
Q Consensus 99 v~~Geiv~I~G~SGSGKSTLlr~L~gllp-~~G~i~~~ldG 138 (176)
+++|+++.|.|++|+|||||+..+..... ..+.+ .+++.
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~v-lyi~~ 110 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTC-AFIDA 110 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCE-EEEES
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeE-EEEEC
Confidence 68999999999999999999988876553 33344 35543
No 424
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.00 E-value=0.0032 Score=53.08 Aligned_cols=26 Identities=38% Similarity=0.503 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
++..+.|.||+|+|||+++++|...+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 34557899999999999999999866
No 425
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.99 E-value=0.0039 Score=47.45 Aligned_cols=24 Identities=33% Similarity=0.347 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhc
Q 030515 102 GCVIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 102 Geiv~I~G~SGSGKSTLlr~L~gl 125 (176)
.--++|+|++|+|||||++.+.+.
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345789999999999999998764
No 426
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.99 E-value=0.0019 Score=49.80 Aligned_cols=23 Identities=35% Similarity=0.299 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhc
Q 030515 103 CVIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 103 eiv~I~G~SGSGKSTLlr~L~gl 125 (176)
-.++|+|.+|+|||||++.|.+.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTC
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 35789999999999999999875
No 427
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.99 E-value=0.0039 Score=46.96 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 030515 104 VIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gl 125 (176)
-++|+|.+|+|||||++.+.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999764
No 428
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.97 E-value=0.004 Score=46.96 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
-++|+|.+|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 429
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.95 E-value=0.0038 Score=52.05 Aligned_cols=27 Identities=37% Similarity=0.653 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhccc
Q 030515 101 KGCVIWITGLSGSGKSTLACALSQALH 127 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLlr~L~gllp 127 (176)
+|..+.|.||+|+|||++++++...+.
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456789999999999999999998874
No 430
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.94 E-value=0.0041 Score=47.75 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
-++|+|.+|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 36899999999999999998643
No 431
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.94 E-value=0.0034 Score=46.96 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 030515 104 VIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gl 125 (176)
-++|+|.+|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999999864
No 432
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.94 E-value=0.0039 Score=48.16 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
-++|+|.+|+|||||++.+.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 46899999999999999887643
No 433
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.94 E-value=0.0039 Score=47.67 Aligned_cols=22 Identities=27% Similarity=0.444 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 030515 104 VIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gl 125 (176)
-++|+|.+|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4689999999999999998764
No 434
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.93 E-value=0.0033 Score=55.04 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 102 GCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 102 Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
+..+.|.||+|+|||||+++|.+.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999999977
No 435
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.92 E-value=0.0059 Score=48.41 Aligned_cols=39 Identities=21% Similarity=0.275 Sum_probs=29.6
Q ss_pred eeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECC
Q 030515 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138 (176)
Q Consensus 99 v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG 138 (176)
..+.-+++++|..|+||||++..|...+. .|.-+..+|.
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~ 49 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNL 49 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEEC
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeC
Confidence 34567889999999999999999987766 6643334543
No 436
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.92 E-value=0.0039 Score=53.77 Aligned_cols=21 Identities=52% Similarity=0.631 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhc
Q 030515 105 IWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 105 v~I~G~SGSGKSTLlr~L~gl 125 (176)
++|+|++|+|||||+++|.+.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999885
No 437
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.92 E-value=0.0044 Score=47.31 Aligned_cols=21 Identities=38% Similarity=0.488 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 030515 104 VIWITGLSGSGKSTLACALSQ 124 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~g 124 (176)
-++|+|.+|+|||||++.+.+
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999975
No 438
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.92 E-value=0.0042 Score=47.61 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
-++|+|.+|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57899999999999999998743
No 439
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.92 E-value=0.0039 Score=48.68 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 103 CVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 103 eiv~I~G~SGSGKSTLlr~L~gll 126 (176)
-.++|+|.+|+|||||++.+.+..
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999998753
No 440
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.91 E-value=0.0029 Score=47.60 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 103 CVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 103 eiv~I~G~SGSGKSTLlr~L~gll 126 (176)
--++|+|.+|+|||||++.+.+..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 347899999999999999987653
No 441
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.90 E-value=0.0032 Score=46.53 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 030515 104 VIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gl 125 (176)
-++|+|.+|+|||||++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4689999999999999998764
No 442
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.90 E-value=0.0045 Score=47.45 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
.++|+|.+|+|||||++.+.+..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999987643
No 443
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.90 E-value=0.0046 Score=46.70 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 030515 104 VIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gl 125 (176)
-++|+|.+|+|||||++.+.+.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4689999999999999887653
No 444
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.90 E-value=0.0044 Score=46.91 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhc
Q 030515 103 CVIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 103 eiv~I~G~SGSGKSTLlr~L~gl 125 (176)
--++|+|.+|+|||||++.+.+.
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999988764
No 445
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=95.89 E-value=0.0041 Score=52.66 Aligned_cols=26 Identities=38% Similarity=0.333 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
..-.++|+|++|+|||||++.|.+..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45578999999999999999998864
No 446
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.89 E-value=0.0047 Score=47.83 Aligned_cols=24 Identities=33% Similarity=0.353 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 103 CVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 103 eiv~I~G~SGSGKSTLlr~L~gll 126 (176)
-.++|+|.+|+|||||+..+....
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 467899999999999998887764
No 447
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.87 E-value=0.0051 Score=51.31 Aligned_cols=30 Identities=30% Similarity=0.396 Sum_probs=25.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhccc-CCCe
Q 030515 102 GCVIWITGLSGSGKSTLACALSQALH-WRGK 131 (176)
Q Consensus 102 Geiv~I~G~SGSGKSTLlr~L~gllp-~~G~ 131 (176)
+.-+.|.|++|+|||+|+++|...+. ..|.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~ 182 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGV 182 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCC
Confidence 67889999999999999999998775 6553
No 448
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.86 E-value=0.0048 Score=51.35 Aligned_cols=22 Identities=36% Similarity=0.367 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 030515 104 VIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gl 125 (176)
.++|+|.+|+|||||++.|.+.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999885
No 449
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.86 E-value=0.0059 Score=46.39 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
+.--++|+|++|+|||||++.+.+..
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 33457999999999999999997643
No 450
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.85 E-value=0.0045 Score=47.05 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
-++|+|.+|+|||||++.+.+..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 46899999999999999988854
No 451
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.85 E-value=0.0049 Score=51.21 Aligned_cols=23 Identities=35% Similarity=0.312 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhc
Q 030515 103 CVIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 103 eiv~I~G~SGSGKSTLlr~L~gl 125 (176)
-.++|+|.+|+|||||++.|.+.
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 36799999999999999999885
No 452
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.83 E-value=0.0046 Score=47.81 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
-++|+|.+|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 453
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.82 E-value=0.0046 Score=50.21 Aligned_cols=23 Identities=35% Similarity=0.362 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
.++|+|.+|||||||++.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47899999999999999999863
No 454
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.81 E-value=0.0029 Score=46.98 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=8.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 030515 104 VIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gl 125 (176)
-++|+|.+|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988754
No 455
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.81 E-value=0.005 Score=46.32 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 030515 104 VIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gl 125 (176)
-++|+|.+|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999999764
No 456
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.81 E-value=0.0021 Score=56.61 Aligned_cols=38 Identities=34% Similarity=0.532 Sum_probs=29.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCe
Q 030515 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139 (176)
Q Consensus 102 Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~ 139 (176)
+.+++|+|++|+||||++..|++.+...|.-+.+++.+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 46899999999999999999999884345433355543
No 457
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.80 E-value=0.005 Score=47.00 Aligned_cols=22 Identities=27% Similarity=0.367 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 030515 104 VIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gl 125 (176)
-++|+|.+|+|||||++.+.+.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999874
No 458
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.78 E-value=0.0012 Score=54.67 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=26.8
Q ss_pred ceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 91 ~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
+++.+...+..|.-+.|.||+|+|||++++++...+
T Consensus 35 ~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 35 MINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp HHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 333333334446678899999999999999998865
No 459
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.78 E-value=0.0017 Score=57.27 Aligned_cols=28 Identities=29% Similarity=0.427 Sum_probs=23.3
Q ss_pred eeCCe--EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 99 QQKGC--VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 99 v~~Ge--iv~I~G~SGSGKSTLlr~L~gll 126 (176)
+..|. .+.|.||+|+||||++++|...+
T Consensus 45 i~~~~~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 45 IEAGHLHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp HHHTCCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHcCCCcEEEEECCCCCcHHHHHHHHHHHh
Confidence 44444 37899999999999999999876
No 460
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.78 E-value=0.005 Score=47.60 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 030515 104 VIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gl 125 (176)
-++|+|.+|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999764
No 461
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.77 E-value=0.0059 Score=50.73 Aligned_cols=26 Identities=35% Similarity=0.385 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
+..-+.|.||+|+|||++++++...+
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 44567899999999999999998764
No 462
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.74 E-value=0.005 Score=50.88 Aligned_cols=23 Identities=39% Similarity=0.543 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
.+.|.||+|+|||++++++...+
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 463
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.74 E-value=0.0027 Score=46.73 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=20.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhc
Q 030515 102 GCVIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 102 Geiv~I~G~SGSGKSTLlr~L~gl 125 (176)
+.-+.|.|++|+|||+++++|...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCcEEEECCCCccHHHHHHHHHHh
Confidence 344789999999999999998764
No 464
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.72 E-value=0.0068 Score=47.51 Aligned_cols=32 Identities=25% Similarity=0.115 Sum_probs=24.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhcccCCCe
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGK 131 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~ 131 (176)
.+|.+.+++|+.||||||.+-.+.......|.
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~ 37 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQ 37 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCC
Confidence 56889999999999999887655554434444
No 465
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.72 E-value=0.0051 Score=51.96 Aligned_cols=25 Identities=36% Similarity=0.535 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 102 GCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 102 Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
...+.|.||+|+||||++++|...+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 3457899999999999999999876
No 466
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.72 E-value=0.0055 Score=51.07 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
.+..+.|.||+|+||||+++.+...+
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35578999999999999999999876
No 467
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.71 E-value=0.0057 Score=51.72 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=23.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
.....+.|.||+|+||||++++|...+
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 345678899999999999999998865
No 468
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.70 E-value=0.0059 Score=49.91 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 030515 104 VIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gl 125 (176)
.++|+|.+|+|||||+++|.|.
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTS
T ss_pred eEEEEcCCCCCHHHHHHHHHCC
Confidence 4789999999999999999886
No 469
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.68 E-value=0.0049 Score=46.85 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 030515 103 CVIWITGLSGSGKSTLACALSQ 124 (176)
Q Consensus 103 eiv~I~G~SGSGKSTLlr~L~g 124 (176)
--++|+|++|+|||||++.+.+
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCS
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 4579999999999999999965
No 470
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.66 E-value=0.0054 Score=49.62 Aligned_cols=23 Identities=22% Similarity=0.177 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
.++|+|.+|+|||||++.|.+.-
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 47899999999999999998863
No 471
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.65 E-value=0.0062 Score=49.39 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
.++|+|.+|+|||||++.|.+..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47899999999999999999853
No 472
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.65 E-value=0.007 Score=54.09 Aligned_cols=42 Identities=26% Similarity=0.240 Sum_probs=32.8
Q ss_pred cceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcc-cCCCeE
Q 030515 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKL 132 (176)
Q Consensus 90 ~~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~~G~i 132 (176)
.+++.+ +.+-+|+..+|+|+||+|||||++.|.... ...+.+
T Consensus 140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i 182 (473)
T 1sky_E 140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGI 182 (473)
T ss_dssp HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCC
T ss_pred hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcE
Confidence 445555 566789999999999999999999998876 344544
No 473
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.63 E-value=0.0071 Score=47.68 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=23.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhccc
Q 030515 102 GCVIWITGLSGSGKSTLACALSQALH 127 (176)
Q Consensus 102 Geiv~I~G~SGSGKSTLlr~L~gllp 127 (176)
|.+++|=|..||||||.++.|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56789999999999999999988774
No 474
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.61 E-value=0.0066 Score=46.44 Aligned_cols=23 Identities=13% Similarity=0.227 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
-++|+|.+|+|||||++.+.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 36899999999999999987643
No 475
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.61 E-value=0.0063 Score=49.68 Aligned_cols=23 Identities=35% Similarity=0.374 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
.++|+|.+|||||||++.|.+..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999854
No 476
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.57 E-value=0.0062 Score=49.45 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
.++|+|++||||||+++.|...+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 46999999999999999997754
No 477
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.56 E-value=0.0056 Score=52.44 Aligned_cols=41 Identities=20% Similarity=0.256 Sum_probs=28.4
Q ss_pred eeCCeEEEEEcCCCCcHHHHHHHHHhcc-cC-CCeEEEEECCee
Q 030515 99 QQKGCVIWITGLSGSGKSTLACALSQAL-HW-RGKLTYILDGDN 140 (176)
Q Consensus 99 v~~Geiv~I~G~SGSGKSTLlr~L~gll-p~-~G~i~~~ldG~~ 140 (176)
+.+| ++-|.|++|||||||+-.+.-.. .. .|..+.++|++.
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~ 68 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF 68 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 5788 88999999999999976554433 22 244444677654
No 478
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.55 E-value=0.0074 Score=46.83 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
-++|+|.+|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 46899999999999999998753
No 479
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.54 E-value=0.0071 Score=46.40 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhc
Q 030515 103 CVIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 103 eiv~I~G~SGSGKSTLlr~L~gl 125 (176)
--++|+|.+|+|||||++.+.+.
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 35789999999999999888753
No 480
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.54 E-value=0.0086 Score=51.21 Aligned_cols=28 Identities=32% Similarity=0.442 Sum_probs=24.5
Q ss_pred EeeCCeEEEEEcCCCCcHHHHHHHHHhc
Q 030515 98 LQQKGCVIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 98 ~v~~Geiv~I~G~SGSGKSTLlr~L~gl 125 (176)
-+.+|.++.|.|++|+|||||+..+...
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 4678888899999999999999998764
No 481
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.52 E-value=0.01 Score=52.14 Aligned_cols=48 Identities=13% Similarity=0.129 Sum_probs=34.4
Q ss_pred ceecceeEeeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECC
Q 030515 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138 (176)
Q Consensus 91 ~l~~isl~v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG 138 (176)
.|+.+.--+++|+++.|.|++|+||||++..++...-..|.-+.++..
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 344443247999999999999999999998887766323644445543
No 482
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.52 E-value=0.0021 Score=53.42 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
.+.|.||+|+||||+++.+...+
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998876
No 483
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.50 E-value=0.0075 Score=46.08 Aligned_cols=22 Identities=14% Similarity=0.149 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 030515 104 VIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gl 125 (176)
-++|+|.+|+|||||++.+.+.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988764
No 484
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.49 E-value=0.0072 Score=48.86 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
.++++|.+|+|||||++.|.+.-
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998753
No 485
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.48 E-value=0.008 Score=46.61 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 030515 104 VIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gl 125 (176)
-++|+|.+|+|||||++.+.+.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999988764
No 486
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.48 E-value=0.0075 Score=48.62 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 030515 104 VIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gll 126 (176)
.++|+|.+|+|||||++.|.+.-
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 487
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.46 E-value=0.0075 Score=48.36 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 102 GCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 102 Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
.-+++|.|++||||||+++.|+..+
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHc
Confidence 4589999999999999999998765
No 488
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.45 E-value=0.013 Score=51.28 Aligned_cols=27 Identities=33% Similarity=0.303 Sum_probs=23.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
.+..-+.|.||+|+|||++++++...+
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 344668899999999999999999866
No 489
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.44 E-value=0.0061 Score=50.60 Aligned_cols=30 Identities=30% Similarity=0.357 Sum_probs=24.3
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhcccCC
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQALHWR 129 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gllp~~ 129 (176)
+.+.-+.|.|++|+|||+++++|....+..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~ 52 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSARS 52 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSSCS
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCccc
Confidence 344567899999999999999999876533
No 490
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=95.43 E-value=0.003 Score=47.73 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=4.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 030515 104 VIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gl 125 (176)
-++|+|.+|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988765
No 491
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.40 E-value=0.0034 Score=51.28 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
.|.++.|.|+.|+|||||++.+....
T Consensus 30 ~~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 30 NYPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred cCCeEEEECCCcCCHHHHHHHHHHHc
Confidence 35789999999999999999887654
No 492
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.39 E-value=0.0084 Score=52.70 Aligned_cols=41 Identities=29% Similarity=0.430 Sum_probs=32.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHhcccCC-CeEEEEECCee
Q 030515 100 QKGCVIWITGLSGSGKSTLACALSQALHWR-GKLTYILDGDN 140 (176)
Q Consensus 100 ~~Geiv~I~G~SGSGKSTLlr~L~gllp~~-G~i~~~ldG~~ 140 (176)
.+..+++++|++|+||||++..|+..+-.. |+-+..+|.+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 456799999999999999999999888544 75544666554
No 493
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=95.38 E-value=0.0033 Score=48.30 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 030515 104 VIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gl 125 (176)
-++|+|.+|+|||||++.+.+.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999988753
No 494
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.37 E-value=0.007 Score=51.28 Aligned_cols=26 Identities=35% Similarity=0.385 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 101 ~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
++.-+.|.||+|+|||++++++...+
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh
Confidence 34457899999999999999998865
No 495
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.36 E-value=0.005 Score=46.14 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 030515 103 CVIWITGLSGSGKSTLACALSQ 124 (176)
Q Consensus 103 eiv~I~G~SGSGKSTLlr~L~g 124 (176)
--++|+|.+|+|||||++.+.+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4579999999999999999854
No 496
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.34 E-value=0.01 Score=52.29 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=28.5
Q ss_pred eeCCeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCeec
Q 030515 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (176)
Q Consensus 99 v~~Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~v 141 (176)
+.+..-+.+.||+|+|||++++++++.+ |...+.+++..+
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~~~l 242 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANST---KAAFIRVNGSEF 242 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHH---TCEEEEEEGGGT
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEecchh
Confidence 3455557899999999999999999865 222345555444
No 497
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.32 E-value=0.0095 Score=46.85 Aligned_cols=21 Identities=38% Similarity=0.488 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 030515 104 VIWITGLSGSGKSTLACALSQ 124 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~g 124 (176)
-++|+|.+|+|||||++.+.+
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 479999999999999999975
No 498
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.30 E-value=0.01 Score=52.35 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=23.8
Q ss_pred eeCCeEEEEEcCCCCcHHHHHHHHHhcc
Q 030515 99 QQKGCVIWITGLSGSGKSTLACALSQAL 126 (176)
Q Consensus 99 v~~Geiv~I~G~SGSGKSTLlr~L~gll 126 (176)
+.+..-+.|.||+|+|||+++++|++.+
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4555667899999999999999999865
No 499
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.28 E-value=0.0078 Score=52.64 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 030515 104 VIWITGLSGSGKSTLACALSQA 125 (176)
Q Consensus 104 iv~I~G~SGSGKSTLlr~L~gl 125 (176)
.++|+|.+|+|||||++.|.+.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5799999999999999999885
No 500
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.28 E-value=0.017 Score=51.24 Aligned_cols=36 Identities=25% Similarity=0.228 Sum_probs=27.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhcccCCCeEEEEECCee
Q 030515 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (176)
Q Consensus 102 Geiv~I~G~SGSGKSTLlr~L~gllp~~G~i~~~ldG~~ 140 (176)
...+.|.||+|+||||++++++..+ |...+.++..+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l---~~~~i~in~s~ 112 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNASD 112 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEeCCC
Confidence 3578899999999999999999876 33334565433
Done!