BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030516
(176 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GM3|A Chain A, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|B Chain B, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|C Chain C, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|D Chain D, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|E Chain E, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|F Chain F, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
Length = 175
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 63/135 (46%), Gaps = 30/135 (22%)
Query: 22 ALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVV 81
A +WTL+ ++T + FK++++H + V+ G V+ + DF+
Sbjct: 30 AFEWTLEKIVRSNTSD--FKILLLHVQ-----VVDEDGFDDVDSIYASPEDFR------- 75
Query: 82 EEAKEICSSKSVH--DFVVE------------VVEGDARNILCEAVEKHHASILVVGSHG 127
+ ++ +K +H +F V + GD ++++C+ V++ LVVGS G
Sbjct: 76 -DXRQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRG 134
Query: 128 YGAIKR-YKSTISCF 141
G ++ + T+S F
Sbjct: 135 LGRFQKVFVGTVSAF 149
>pdb|4AP2|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
Resolution
Length = 410
Score = 33.5 bits (75), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 12/93 (12%)
Query: 74 KKIAARVVEEAKEI--CSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAI 131
KK+ AR+ EE + + C KS + +V+VVE E + KH +I+ + + G +
Sbjct: 235 KKVEARINEEIERVMHCLDKSTEEPIVKVVER-------ELISKHMKTIVEMENSGLVHM 287
Query: 132 KRYKSTISCFIWYLIFSRVELG---MVNCFGYY 161
+ T Y +FSRV G M C Y
Sbjct: 288 LKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSY 320
>pdb|4APF|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
Resolution
Length = 388
Score = 33.1 bits (74), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 12/93 (12%)
Query: 74 KKIAARVVEEAKEI--CSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAI 131
KK+ AR+ EE + + C KS + +V+VVE E + KH +I+ + + G +
Sbjct: 213 KKVEARINEEIERVMHCLDKSTEEPIVKVVER-------ELISKHMKTIVEMENSGLVHM 265
Query: 132 KRYKSTISCFIWYLIFSRVELG---MVNCFGYY 161
+ T Y +FSRV G M C Y
Sbjct: 266 LKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSY 298
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 64 EVLPHVDSDFKKIAARVVEEAKEICSS-KSVHDFVVEV------VEGDA-RNILCEAVEK 115
EV +D + KKI E AKEI + D +VE+ +EGD R IL E EK
Sbjct: 403 EVASKIDEEVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDELRRILSEEFEK 462
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 64 EVLPHVDSDFKKIAARVVEEAKEICSS-KSVHDFVVEV------VEGDA-RNILCEAVEK 115
EV +D + KKI E AKEI + D +VE+ +EGD R IL E EK
Sbjct: 403 EVASKIDEEVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDELRRILSEEFEK 462
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,143,548
Number of Sequences: 62578
Number of extensions: 189394
Number of successful extensions: 479
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 478
Number of HSP's gapped (non-prelim): 12
length of query: 176
length of database: 14,973,337
effective HSP length: 92
effective length of query: 84
effective length of database: 9,216,161
effective search space: 774157524
effective search space used: 774157524
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)