BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030516
(176 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LGG8|USPAL_ARATH Universal stress protein A-like protein OS=Arabidopsis thaliana
GN=At3g01520 PE=1 SV=2
Length = 175
Score = 37.7 bits (86), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 63/135 (46%), Gaps = 30/135 (22%)
Query: 22 ALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVV 81
A +WTL+ ++T + FK++++H + V+ G V+ + DF+ +
Sbjct: 30 AFEWTLEKIVRSNTSD--FKILLLHVQ-----VVDEDGFDDVDSIYASPEDFRDM----- 77
Query: 82 EEAKEICSSKSVH--DFVVE------------VVEGDARNILCEAVEKHHASILVVGSHG 127
++ +K +H +F V + GD ++++C+ V++ LVVGS G
Sbjct: 78 ---RQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRG 134
Query: 128 YGAIKR-YKSTISCF 141
G ++ + T+S F
Sbjct: 135 LGRFQKVFVGTVSAF 149
>sp|A4IHP4|CUL3_XENTR Cullin-3 OS=Xenopus tropicalis GN=cul3 PE=2 SV=1
Length = 768
Score = 35.0 bits (79), Expect = 0.22, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 12/93 (12%)
Query: 74 KKIAARVVEEAKEI--CSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAI 131
KK+ AR+ EE + + C KS + +V+VVE E + KH +I+ + + G +
Sbjct: 235 KKVEARINEEIERVMHCLDKSTEEPIVKVVER-------ELISKHMKTIVEMENSGLVHM 287
Query: 132 KRYKSTISCFIWYLIFSRVELG---MVNCFGYY 161
+ T Y +FSRV G M C Y
Sbjct: 288 LKNGKTEDLACMYKLFSRVPNGLKTMCECMSLY 320
>sp|Q6GPF3|CUL3B_XENLA Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1
Length = 768
Score = 35.0 bits (79), Expect = 0.22, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 12/93 (12%)
Query: 74 KKIAARVVEEAKEI--CSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAI 131
KK+ AR+ EE + + C KS + +V+VVE E + KH +I+ + + G +
Sbjct: 235 KKVEARINEEIERVMHCLDKSTEEPIVKVVER-------ELISKHMKTIVEMENSGLVHM 287
Query: 132 KRYKSTISCFIWYLIFSRVELG---MVNCFGYY 161
+ T Y +FSRV G M C Y
Sbjct: 288 LKNGKTEDLACMYKLFSRVPNGLKTMCECMSLY 320
>sp|Q6DE95|CUL3A_XENLA Cullin-3-A OS=Xenopus laevis GN=cul3a PE=1 SV=1
Length = 768
Score = 35.0 bits (79), Expect = 0.22, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 12/93 (12%)
Query: 74 KKIAARVVEEAKEI--CSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAI 131
KK+ AR+ EE + + C KS + +V+VVE E + KH +I+ + + G +
Sbjct: 235 KKVEARINEEIERVMHCLDKSTEEPIVKVVER-------ELISKHMKTIVEMENSGLVHM 287
Query: 132 KRYKSTISCFIWYLIFSRVELG---MVNCFGYY 161
+ T Y +FSRV G M C Y
Sbjct: 288 LKNGKTEDLACMYKLFSRVPNGLKTMCECMSLY 320
>sp|B5DF89|CUL3_RAT Cullin-3 OS=Rattus norvegicus GN=Cul3 PE=1 SV=2
Length = 768
Score = 35.0 bits (79), Expect = 0.26, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 12/93 (12%)
Query: 74 KKIAARVVEEAKEI--CSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAI 131
KK+ AR+ EE + + C KS + +V+VVE E + KH +I+ + + G +
Sbjct: 235 KKVEARINEEIERVMHCLDKSTEEPIVKVVER-------ELISKHMKTIVEMENSGLVHM 287
Query: 132 KRYKSTISCFIWYLIFSRVELG---MVNCFGYY 161
+ T Y +FSRV G M C Y
Sbjct: 288 LKNGKTEDLACMYKLFSRVPNGLKTMCECMSSY 320
>sp|Q9JLV5|CUL3_MOUSE Cullin-3 OS=Mus musculus GN=Cul3 PE=1 SV=1
Length = 768
Score = 34.7 bits (78), Expect = 0.33, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 12/93 (12%)
Query: 74 KKIAARVVEEAKEI--CSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAI 131
KK+ AR+ EE + + C KS + +V+VVE E + KH +I+ + + G +
Sbjct: 235 KKVEARINEEIERVMHCLDKSTEEPIVKVVER-------ELISKHMKTIVEMENSGLVHM 287
Query: 132 KRYKSTISCFIWYLIFSRVELG---MVNCFGYY 161
+ T Y +FSRV G M C Y
Sbjct: 288 LKNGKTEDLACMYKLFSRVPNGLKTMCECMSCY 320
>sp|Q13618|CUL3_HUMAN Cullin-3 OS=Homo sapiens GN=CUL3 PE=1 SV=2
Length = 768
Score = 34.7 bits (78), Expect = 0.35, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 12/93 (12%)
Query: 74 KKIAARVVEEAKEI--CSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAI 131
KK+ AR+ EE + + C KS + +V+VVE E + KH +I+ + + G +
Sbjct: 235 KKVEARINEEIERVMHCLDKSTEEPIVKVVER-------ELISKHMKTIVEMENSGLVHM 287
Query: 132 KRYKSTISCFIWYLIFSRVELG---MVNCFGYY 161
+ T Y +FSRV G M C Y
Sbjct: 288 LKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSY 320
>sp|Q0VD30|CCZ1_BOVIN Vacuolar fusion protein CCZ1 homolog OS=Bos taurus GN=CCZ1 PE=2
SV=1
Length = 480
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 17/96 (17%)
Query: 24 QWTLDHFFANSTVNPPFKLV-----------IVHARPSPSAVIGLAGPGAVEVLPHVDSD 72
Q+ ++ + S P FK + VH R +PS + P +++L ++SD
Sbjct: 358 QFNINKRMSGSEKEPQFKFIYFNHMNLAEKSTVHMRKTPSVSLTSVHPDLMKILGDINSD 417
Query: 73 FKKIAARVVEEAKEICSSKSVHDFVVEVVEGDARNI 108
F + V+E +EI K++ D+ V + D R +
Sbjct: 418 FTR-----VDEDEEII-VKAMSDYWVVGKKSDQREL 447
>sp|P86791|CCZ1_HUMAN Vacuolar fusion protein CCZ1 homolog OS=Homo sapiens GN=CCZ1 PE=1
SV=1
Length = 482
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 17/96 (17%)
Query: 24 QWTLDHFFANSTVNPPFKLV-----------IVHARPSPSAVIGLAGPGAVEVLPHVDSD 72
Q+ ++ + S P FK + VH R +PS + P +++L ++SD
Sbjct: 360 QFNINKRMSGSEKEPQFKFIYFNHMNLAEKSTVHMRKTPSVSLTSVHPDLMKILGDINSD 419
Query: 73 FKKIAARVVEEAKEICSSKSVHDFVVEVVEGDARNI 108
F + V+E +EI K++ D+ V + D R +
Sbjct: 420 FTR-----VDEDEEII-VKAMSDYWVVGKKSDRREL 449
>sp|P86790|CCZ1B_HUMAN Vacuolar fusion protein CCZ1 homolog B OS=Homo sapiens GN=CCZ1B
PE=1 SV=1
Length = 482
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 17/96 (17%)
Query: 24 QWTLDHFFANSTVNPPFKLV-----------IVHARPSPSAVIGLAGPGAVEVLPHVDSD 72
Q+ ++ + S P FK + VH R +PS + P +++L ++SD
Sbjct: 360 QFNINKRMSGSEKEPQFKFIYFNHMNLAEKSTVHMRKTPSVSLTSVHPDLMKILGDINSD 419
Query: 73 FKKIAARVVEEAKEICSSKSVHDFVVEVVEGDARNI 108
F + V+E +EI K++ D+ V + D R +
Sbjct: 420 FTR-----VDEDEEII-VKAMSDYWVVGKKSDRREL 449
>sp|Q5ZLN2|CCZ1_CHICK Vacuolar fusion protein CCZ1 homolog OS=Gallus gallus GN=CCZ1 PE=2
SV=1
Length = 476
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 17/96 (17%)
Query: 24 QWTLDHFFANSTVNPPFKLV-----------IVHARPSPSAVIGLAGPGAVEVLPHVDSD 72
Q+ ++ + + P FK + +H R +PS + P +++L ++SD
Sbjct: 354 QYNINKRISGAEKEPQFKFIYFNHMNLAEKSTIHMRKTPSVSLASVHPDLMKILGDINSD 413
Query: 73 FKKIAARVVEEAKEICSSKSVHDFVVEVVEGDARNI 108
F + V+E +EI K++ D+ V + D R +
Sbjct: 414 FSR-----VDEDEEII-VKAMSDYWVVGKKSDQREL 443
>sp|P0A504|CTPE_MYCTU Probable cation-transporting ATPase E OS=Mycobacterium tuberculosis
GN=ctpE PE=3 SV=1
Length = 797
Score = 30.4 bits (67), Expect = 6.1, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 26 TLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSD 72
TLD + + V P K IVHA S + + G G +VL D+D
Sbjct: 502 TLDSYTSFGRVRPDQKRAIVHALQSHGHTVAMTGDGVNDVLALKDAD 548
>sp|P0A505|CTPE_MYCBO Probable cation-transporting ATPase E OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=ctpE PE=3 SV=1
Length = 797
Score = 30.4 bits (67), Expect = 6.1, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 26 TLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSD 72
TLD + + V P K IVHA S + + G G +VL D+D
Sbjct: 502 TLDSYTSFGRVRPDQKRAIVHALQSHGHTVAMTGDGVNDVLALKDAD 548
>sp|Q02854|NUXM_NEUCR NADH-ubiquinone oxidoreductase 21 kDa subunit OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=nuo-21 PE=1 SV=1
Length = 189
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 13 IDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSP---SAVIGLAGPGAVEVL 66
+ + TY + TL+ + +P F+ VI +ARPS V G AGPG + ++
Sbjct: 1 MSSTSSPTYTISKTLNTNYPLIDNDPHFRRVIGYARPSDYVHGTVAGAAGPGLLYLM 57
>sp|Q9WZ49|FTSH_THEMA ATP-dependent zinc metalloprotease FtsH OS=Thermotoga maritima
(strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
GN=ftsH PE=1 SV=1
Length = 610
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 64 EVLPHVDSDFKKIAARVVEEAKEICSS-KSVHDFVVEV------VEGDA-RNILCEAVEK 115
EV +D + KKI E AKEI + D +VE+ +EGD R IL E EK
Sbjct: 548 EVASKIDEEVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDELRRILSEEFEK 607
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,885,310
Number of Sequences: 539616
Number of extensions: 2452409
Number of successful extensions: 6766
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 6759
Number of HSP's gapped (non-prelim): 35
length of query: 176
length of database: 191,569,459
effective HSP length: 110
effective length of query: 66
effective length of database: 132,211,699
effective search space: 8725972134
effective search space used: 8725972134
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)