Query 030516
Match_columns 176
No_of_seqs 118 out of 1845
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 14:54:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030516.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030516hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09982 universal stress prot 99.9 2.3E-22 5E-27 145.0 12.0 139 4-157 1-139 (142)
2 PRK15456 universal stress prot 99.9 1.1E-21 2.4E-26 141.1 14.0 139 5-156 1-142 (142)
3 cd01989 STK_N The N-terminal d 99.9 4.8E-21 1E-25 138.1 13.2 140 8-157 1-145 (146)
4 PRK15005 universal stress prot 99.9 2.2E-20 4.8E-25 134.3 14.6 141 5-156 1-144 (144)
5 PRK10116 universal stress prot 99.8 3.6E-20 7.9E-25 132.9 12.8 141 4-159 1-141 (142)
6 PRK15118 universal stress glob 99.8 7.8E-20 1.7E-24 131.6 12.5 138 4-157 1-139 (144)
7 PRK11175 universal stress prot 99.8 4E-19 8.7E-24 142.6 13.8 161 4-173 1-162 (305)
8 PF00582 Usp: Universal stress 99.8 2.7E-17 5.9E-22 115.6 12.3 139 5-156 1-140 (140)
9 cd01988 Na_H_Antiporter_C The 99.7 7.6E-17 1.6E-21 113.7 14.3 130 8-156 1-132 (132)
10 cd01987 USP_OKCHK USP domain i 99.7 3.6E-17 7.8E-22 114.7 11.4 122 8-155 1-123 (124)
11 PRK11175 universal stress prot 99.7 2.3E-16 5.1E-21 126.5 13.5 146 5-161 151-304 (305)
12 PRK12652 putative monovalent c 99.6 5.6E-15 1.2E-19 120.9 14.7 109 3-128 2-124 (357)
13 cd00293 USP_Like Usp: Universa 99.6 1.2E-14 2.6E-19 101.0 14.2 128 8-154 1-129 (130)
14 COG0589 UspA Universal stress 99.6 1.7E-14 3.8E-19 103.5 15.1 148 4-158 3-153 (154)
15 PRK10490 sensor protein KdpD; 98.9 2.7E-08 5.9E-13 90.8 12.2 124 5-156 249-373 (895)
16 COG2205 KdpD Osmosensitive K+ 98.7 1.7E-07 3.7E-12 82.8 11.6 107 6-137 248-354 (890)
17 cd01984 AANH_like Adenine nucl 97.7 0.00032 6.9E-09 45.7 7.2 68 9-137 1-68 (86)
18 PLN03159 cation/H(+) antiporte 97.4 0.0054 1.2E-07 56.1 14.2 116 6-128 630-753 (832)
19 TIGR02432 lysidine_TilS_N tRNA 96.9 0.023 5.1E-07 42.3 10.9 99 8-134 1-116 (189)
20 cd01992 PP-ATPase N-terminal d 96.2 0.072 1.6E-06 39.4 9.6 130 8-165 1-151 (185)
21 PF01171 ATP_bind_3: PP-loop f 95.5 0.4 8.6E-06 35.6 10.9 100 8-135 1-114 (182)
22 TIGR00591 phr2 photolyase PhrI 92.8 1.3 2.7E-05 37.9 9.8 92 14-127 32-123 (454)
23 PRK10696 tRNA 2-thiocytidine b 92.1 4.8 0.0001 31.7 12.4 100 5-133 28-147 (258)
24 PRK12342 hypothetical protein; 92.0 1.3 2.8E-05 35.0 8.2 86 15-130 33-122 (254)
25 PLN03159 cation/H(+) antiporte 91.9 2.3 4.9E-05 39.4 10.7 121 7-131 459-584 (832)
26 PRK03359 putative electron tra 91.6 1.3 2.7E-05 35.2 7.7 88 15-130 34-125 (256)
27 COG0037 MesJ tRNA(Ile)-lysidin 91.4 2.1 4.5E-05 34.1 9.0 102 7-135 22-138 (298)
28 COG2086 FixA Electron transfer 91.2 1.7 3.7E-05 34.5 8.1 86 14-129 34-123 (260)
29 PF01012 ETF: Electron transfe 90.4 5.2 0.00011 28.9 11.3 89 8-129 1-102 (164)
30 PF00875 DNA_photolyase: DNA p 90.2 4.4 9.6E-05 29.3 9.1 92 15-129 9-100 (165)
31 cd01993 Alpha_ANH_like_II This 89.3 6.8 0.00015 28.6 11.3 39 8-49 1-39 (185)
32 PRK07313 phosphopantothenoylcy 89.0 1.7 3.7E-05 32.5 6.2 113 6-157 1-121 (182)
33 PRK05579 bifunctional phosphop 87.9 3.8 8.1E-05 34.6 8.2 119 2-159 2-126 (399)
34 TIGR03556 photolyase_8HDF deox 86.7 9.5 0.00021 32.8 10.2 91 14-127 10-100 (471)
35 TIGR02113 coaC_strep phosphopa 86.4 2.4 5.2E-05 31.6 5.6 118 7-163 1-126 (177)
36 PRK08305 spoVFB dipicolinate s 85.4 4.4 9.5E-05 30.8 6.7 123 4-159 3-131 (196)
37 TIGR02765 crypto_DASH cryptoch 84.6 15 0.00033 31.0 10.4 97 14-127 10-106 (429)
38 KOG1650 Predicted K+/H+-antipo 84.1 7.3 0.00016 35.8 8.6 108 6-128 614-723 (769)
39 PRK13820 argininosuccinate syn 82.0 30 0.00065 29.2 11.3 37 5-49 1-38 (394)
40 PRK10660 tilS tRNA(Ile)-lysidi 80.7 26 0.00057 29.9 10.3 39 6-48 15-53 (436)
41 PRK10674 deoxyribodipyrimidine 80.7 25 0.00054 30.3 10.3 93 14-126 11-105 (472)
42 PF02844 GARS_N: Phosphoribosy 80.2 1.8 3.8E-05 29.3 2.5 46 104-162 49-94 (100)
43 TIGR00268 conserved hypothetic 79.5 28 0.0006 27.2 10.2 35 5-48 11-45 (252)
44 PRK05253 sulfate adenylyltrans 79.4 32 0.00069 27.9 10.4 40 5-49 26-65 (301)
45 TIGR02852 spore_dpaB dipicolin 77.9 16 0.00034 27.6 7.2 117 7-156 1-123 (187)
46 PF00448 SRP54: SRP54-type pro 77.3 28 0.00061 26.2 9.0 91 8-133 4-99 (196)
47 cd01990 Alpha_ANH_like_I This 76.7 28 0.00062 25.9 10.3 32 9-48 1-32 (202)
48 PRK13982 bifunctional SbtC-lik 76.3 11 0.00025 32.5 6.8 119 6-163 70-194 (475)
49 COG0415 PhrB Deoxyribodipyrimi 75.3 39 0.00084 29.2 9.7 90 14-127 11-100 (461)
50 COG0552 FtsY Signal recognitio 74.6 48 0.001 27.4 9.9 96 8-136 142-240 (340)
51 cd01995 ExsB ExsB is a transcr 74.4 30 0.00064 25.0 10.8 88 8-129 1-88 (169)
52 PRK00919 GMP synthase subunit 74.1 34 0.00074 27.8 8.8 35 7-49 22-56 (307)
53 PLN00200 argininosuccinate syn 73.2 57 0.0012 27.7 12.8 38 4-49 3-40 (404)
54 PRK10867 signal recognition pa 71.7 43 0.00094 28.7 9.2 94 9-134 104-200 (433)
55 TIGR00521 coaBC_dfp phosphopan 71.6 28 0.0006 29.4 7.9 115 5-157 2-120 (390)
56 TIGR00959 ffh signal recogniti 70.7 54 0.0012 28.1 9.5 94 8-133 102-198 (428)
57 cd01712 ThiI ThiI is required 70.7 38 0.00083 24.6 12.2 34 8-50 1-34 (177)
58 KOG0781 Signal recognition par 70.1 38 0.00082 29.6 8.3 103 5-136 378-485 (587)
59 TIGR01425 SRP54_euk signal rec 68.9 57 0.0012 27.9 9.3 94 9-135 104-200 (429)
60 COG0541 Ffh Signal recognition 68.1 63 0.0014 27.8 9.2 96 8-136 103-201 (451)
61 KOG3111 D-ribulose-5-phosphate 67.9 26 0.00056 26.7 6.2 48 83-133 103-150 (224)
62 COG0300 DltE Short-chain dehyd 63.5 75 0.0016 25.3 8.7 94 2-134 2-100 (265)
63 TIGR00342 thiazole biosynthesi 62.7 90 0.0019 26.0 12.3 34 6-48 172-205 (371)
64 COG3360 Uncharacterized conser 61.9 26 0.00056 21.8 4.4 46 1-51 1-46 (71)
65 PF03652 UPF0081: Uncharacteri 61.7 12 0.00027 26.4 3.5 54 103-156 37-94 (135)
66 TIGR00290 MJ0570_dom MJ0570-re 61.0 76 0.0016 24.6 10.0 35 8-51 2-36 (223)
67 COG0036 Rpe Pentose-5-phosphat 60.7 51 0.0011 25.5 6.8 53 81-136 98-150 (220)
68 cd01986 Alpha_ANH_like Adenine 60.0 46 0.001 21.8 8.5 78 9-134 1-78 (103)
69 COG0299 PurN Folate-dependent 59.8 76 0.0016 24.2 9.5 86 7-128 1-90 (200)
70 cd06365 PBP1_Pheromone_recepto 59.7 1.1E+02 0.0024 26.1 11.4 74 96-171 232-308 (469)
71 PF02441 Flavoprotein: Flavopr 59.3 20 0.00043 24.9 4.2 112 7-159 1-120 (129)
72 COG1606 ATP-utilizing enzymes 59.2 90 0.002 24.9 10.7 24 105-128 101-124 (269)
73 PF03746 LamB_YcsF: LamB/YcsF 58.9 88 0.0019 24.6 11.4 108 7-128 28-146 (242)
74 TIGR02766 crypt_chrom_pln cryp 58.6 1.2E+02 0.0026 26.1 9.9 73 41-126 24-96 (475)
75 PF02601 Exonuc_VII_L: Exonucl 58.5 31 0.00068 27.8 5.8 57 101-159 51-115 (319)
76 PF14639 YqgF: Holliday-juncti 57.9 5.2 0.00011 29.0 1.0 58 106-164 52-113 (150)
77 PRK05920 aromatic acid decarbo 57.2 30 0.00066 26.4 5.1 36 5-46 2-37 (204)
78 PF03808 Glyco_tran_WecB: Glyc 56.0 44 0.00096 24.5 5.7 25 104-128 88-112 (172)
79 COG1066 Sms Predicted ATP-depe 55.4 1.4E+02 0.003 25.8 9.7 84 8-128 95-179 (456)
80 PRK12569 hypothetical protein; 55.3 1E+02 0.0022 24.3 8.1 98 16-128 42-151 (245)
81 TIGR01162 purE phosphoribosyla 55.0 58 0.0013 23.8 6.0 57 80-137 13-73 (156)
82 COG1197 Mfd Transcription-repa 54.7 1.5E+02 0.0033 28.7 10.0 92 4-128 614-707 (1139)
83 PF00731 AIRC: AIR carboxylase 54.6 43 0.00093 24.3 5.3 57 80-137 15-75 (150)
84 PRK05406 LamB/YcsF family prot 54.4 1.1E+02 0.0023 24.2 8.3 100 15-128 38-148 (246)
85 PRK06029 3-octaprenyl-4-hydrox 54.2 32 0.0007 25.8 4.8 36 6-46 1-36 (185)
86 COG0041 PurE Phosphoribosylcar 53.1 80 0.0017 23.1 6.4 55 80-135 17-75 (162)
87 PRK14974 cell division protein 52.1 1.3E+02 0.0029 24.7 9.1 30 103-132 205-237 (336)
88 cd01713 PAPS_reductase This do 52.0 80 0.0017 22.1 10.7 35 8-48 1-35 (173)
89 TIGR00640 acid_CoA_mut_C methy 51.9 46 0.00099 23.4 5.0 34 96-129 31-65 (132)
90 cd03364 TOPRIM_DnaG_primases T 51.3 58 0.0013 20.3 5.2 27 6-32 43-69 (79)
91 TIGR02699 archaeo_AfpA archaeo 51.0 50 0.0011 24.5 5.3 40 118-157 79-123 (174)
92 PF13662 Toprim_4: Toprim doma 51.0 33 0.00072 21.5 3.9 27 6-32 46-72 (81)
93 COG2102 Predicted ATPases of P 50.6 1.2E+02 0.0026 23.6 10.7 78 81-161 101-180 (223)
94 TIGR00032 argG argininosuccina 50.5 1.6E+02 0.0034 25.0 10.8 33 8-49 1-33 (394)
95 KOG0780 Signal recognition par 49.6 1.7E+02 0.0036 25.1 8.9 51 80-131 144-197 (483)
96 PRK00771 signal recognition pa 49.4 1.7E+02 0.0037 25.1 9.0 33 9-47 99-131 (437)
97 TIGR00696 wecB_tagA_cpsF bacte 48.7 69 0.0015 23.8 5.8 23 106-128 89-111 (177)
98 TIGR01501 MthylAspMutase methy 48.2 56 0.0012 23.2 5.0 26 103-128 38-63 (134)
99 cd02071 MM_CoA_mut_B12_BD meth 48.2 56 0.0012 22.3 5.0 33 96-128 28-61 (122)
100 TIGR02039 CysD sulfate adenyly 48.1 1.5E+02 0.0032 24.0 11.0 39 5-48 18-56 (294)
101 PRK00109 Holliday junction res 47.8 19 0.00042 25.5 2.6 20 105-124 42-61 (138)
102 PRK01565 thiamine biosynthesis 47.5 1.7E+02 0.0037 24.6 12.0 35 6-49 176-210 (394)
103 PRK11889 flhF flagellar biosyn 47.3 1.5E+02 0.0033 25.5 8.1 28 105-132 308-335 (436)
104 TIGR00237 xseA exodeoxyribonuc 46.8 49 0.0011 28.2 5.3 57 101-159 166-227 (432)
105 PRK00286 xseA exodeoxyribonucl 46.3 44 0.00096 28.4 5.0 57 101-159 172-232 (438)
106 COG1597 LCB5 Sphingosine kinas 45.5 79 0.0017 25.5 6.1 59 75-135 16-75 (301)
107 cd01493 APPBP1_RUB Ubiquitin a 45.3 59 0.0013 27.8 5.5 66 96-170 90-158 (425)
108 cd06533 Glyco_transf_WecG_TagA 45.1 82 0.0018 23.0 5.7 24 105-128 87-110 (171)
109 TIGR00930 2a30 K-Cl cotranspor 44.6 2.9E+02 0.0063 26.4 12.1 97 7-127 576-677 (953)
110 PF02878 PGM_PMM_I: Phosphoglu 44.4 49 0.0011 23.1 4.3 42 5-51 39-80 (137)
111 PRK00509 argininosuccinate syn 44.0 2E+02 0.0044 24.4 10.8 36 6-49 2-37 (399)
112 TIGR00421 ubiX_pad polyprenyl 43.9 46 0.001 24.8 4.2 32 8-45 1-32 (181)
113 PF07015 VirC1: VirC1 protein; 43.4 1.1E+02 0.0024 23.9 6.3 32 15-52 12-43 (231)
114 PLN02895 phosphoacetylglucosam 43.0 2.2E+02 0.0047 25.4 8.8 136 5-151 126-269 (562)
115 PRK13606 LPPG:FO 2-phospho-L-l 42.9 36 0.00078 27.7 3.7 49 104-158 174-224 (303)
116 PRK05370 argininosuccinate syn 42.1 1.9E+02 0.0042 24.9 8.0 119 5-132 10-137 (447)
117 PF13167 GTP-bdg_N: GTP-bindin 42.1 1E+02 0.0022 20.5 6.6 54 77-132 6-71 (95)
118 PF01220 DHquinase_II: Dehydro 41.7 1.3E+02 0.0028 21.6 6.4 83 79-164 29-132 (140)
119 cd01985 ETF The electron trans 41.7 1.4E+02 0.0029 21.8 10.8 24 106-129 80-103 (181)
120 cd05469 Transthyretin_like Tra 41.3 10 0.00022 26.2 0.3 13 150-163 98-110 (113)
121 cd06375 PBP1_mGluR_groupII Lig 40.8 2.3E+02 0.005 24.1 11.8 27 103-129 242-268 (458)
122 cd02072 Glm_B12_BD B12 binding 40.7 34 0.00074 24.1 2.9 27 103-129 36-62 (128)
123 COG1570 XseA Exonuclease VII, 40.3 71 0.0015 27.4 5.2 57 101-159 172-233 (440)
124 PF09043 Lys-AminoMut_A: D-Lys 40.2 2.1E+02 0.0046 24.7 7.8 53 85-137 138-193 (509)
125 cd03557 L-arabinose_isomerase 39.9 1.3E+02 0.0029 26.2 6.9 77 75-158 19-100 (484)
126 cd02067 B12-binding B12 bindin 39.9 1.1E+02 0.0025 20.4 5.5 26 103-128 36-61 (119)
127 PRK02261 methylaspartate mutas 39.8 95 0.0021 21.9 5.1 27 103-129 40-66 (137)
128 TIGR02370 pyl_corrinoid methyl 39.7 60 0.0013 24.4 4.3 32 102-133 120-151 (197)
129 PF02310 B12-binding: B12 bind 39.5 1.1E+02 0.0025 20.2 6.4 44 85-131 21-65 (121)
130 cd07186 CofD_like LPPG:FO 2-ph 39.3 43 0.00094 27.3 3.6 50 104-157 172-223 (303)
131 COG2351 Transthyretin-like pro 39.1 12 0.00025 26.1 0.3 14 149-163 108-121 (124)
132 PRK04527 argininosuccinate syn 38.8 2.5E+02 0.0053 23.9 11.6 35 6-49 2-36 (400)
133 TIGR00250 RNAse_H_YqgF RNAse H 38.3 32 0.00069 24.2 2.5 20 105-124 36-55 (130)
134 COG0151 PurD Phosphoribosylami 38.0 31 0.00068 29.4 2.7 25 104-128 50-74 (428)
135 TIGR00884 guaA_Cterm GMP synth 37.5 2.2E+02 0.0049 23.1 11.6 35 7-49 17-51 (311)
136 cd01997 GMP_synthase_C The C-t 37.5 2.2E+02 0.0048 23.0 11.2 34 8-49 1-34 (295)
137 cd08162 MPP_PhoA_N Synechococc 37.1 1.4E+02 0.0031 24.2 6.4 51 117-168 232-290 (313)
138 PRK14665 mnmA tRNA-specific 2- 37.0 2.5E+02 0.0054 23.4 10.2 35 5-48 4-38 (360)
139 TIGR00273 iron-sulfur cluster- 36.8 1E+02 0.0022 26.4 5.7 56 69-125 41-96 (432)
140 COG2179 Predicted hydrolase of 35.9 53 0.0011 24.4 3.3 36 6-47 35-70 (175)
141 PF00576 Transthyretin: HIUase 35.3 11 0.00024 25.9 -0.3 14 149-163 97-110 (112)
142 TIGR02962 hdxy_isourate hydrox 35.2 14 0.00031 25.4 0.3 13 150-163 97-109 (112)
143 PRK13010 purU formyltetrahydro 34.9 2.4E+02 0.0053 22.7 8.3 26 105-130 157-182 (289)
144 PF02568 ThiI: Thiamine biosyn 34.9 2E+02 0.0044 21.8 8.8 37 7-52 4-40 (197)
145 COG1540 Uncharacterized protei 34.4 2.3E+02 0.005 22.3 8.1 100 15-128 38-148 (252)
146 cd02070 corrinoid_protein_B12- 34.3 84 0.0018 23.6 4.4 31 102-132 118-148 (201)
147 PRK08091 ribulose-phosphate 3- 34.1 2.3E+02 0.0049 22.1 7.5 44 81-126 166-209 (228)
148 COG0452 Dfp Phosphopantothenoy 33.8 92 0.002 26.3 4.9 37 5-47 3-39 (392)
149 PRK02929 L-arabinose isomerase 33.8 1.8E+02 0.0038 25.6 6.7 76 75-157 25-105 (499)
150 cd00466 DHQase_II Dehydroquina 33.7 76 0.0016 22.8 3.7 79 83-164 32-131 (140)
151 PRK10416 signal recognition pa 33.1 2.7E+02 0.0058 22.7 10.0 93 9-134 118-213 (318)
152 TIGR02855 spore_yabG sporulati 32.5 1.8E+02 0.004 23.4 6.0 30 98-127 134-163 (283)
153 KOG1116 Sphingosine kinase, in 32.3 1.4E+02 0.0031 26.5 5.9 77 80-158 199-276 (579)
154 PRK05395 3-dehydroquinate dehy 32.1 73 0.0016 23.0 3.5 77 85-164 36-133 (146)
155 cd01715 ETF_alpha The electron 31.6 64 0.0014 23.3 3.3 26 105-130 71-96 (168)
156 cd03115 SRP The signal recogni 31.4 1.9E+02 0.0042 20.6 8.6 33 9-47 4-36 (173)
157 cd05822 TLP_HIUase HIUase (5-h 31.2 18 0.0004 24.8 0.3 13 150-163 97-109 (112)
158 TIGR00064 ftsY signal recognit 31.1 2.7E+02 0.0058 22.1 9.8 90 10-132 77-169 (272)
159 PRK14057 epimerase; Provisiona 30.9 2.7E+02 0.0059 22.1 8.0 45 80-126 179-223 (254)
160 PRK08745 ribulose-phosphate 3- 30.6 2.5E+02 0.0055 21.6 8.1 44 81-126 158-201 (223)
161 PF01729 QRPTase_C: Quinolinat 30.1 1.2E+02 0.0027 22.3 4.6 31 95-126 127-157 (169)
162 KOG2310 DNA repair exonuclease 30.1 46 0.001 29.4 2.5 21 105-125 40-60 (646)
163 TIGR00646 MG010 DNA primase-re 30.0 1.6E+02 0.0035 22.8 5.3 35 6-45 154-188 (218)
164 TIGR02356 adenyl_thiF thiazole 30.0 1.7E+02 0.0037 21.9 5.5 66 96-170 91-157 (202)
165 COG0137 ArgG Argininosuccinate 30.0 3.5E+02 0.0075 23.0 11.3 29 105-133 100-128 (403)
166 PRK14664 tRNA-specific 2-thiou 30.0 3.3E+02 0.0072 22.8 11.3 22 107-128 98-119 (362)
167 COG0420 SbcD DNA repair exonuc 29.8 52 0.0011 27.4 2.8 28 74-104 22-49 (390)
168 COG1751 Uncharacterized conser 29.7 61 0.0013 23.8 2.7 95 75-170 10-116 (186)
169 PF01645 Glu_synthase: Conserv 29.5 2.5E+02 0.0053 23.6 6.7 37 92-128 202-238 (368)
170 PRK09590 celB cellobiose phosp 29.3 1.5E+02 0.0031 20.0 4.5 70 80-160 17-86 (104)
171 COG3640 CooC CO dehydrogenase 29.3 2.9E+02 0.0063 21.9 7.2 30 98-129 81-110 (255)
172 PRK13015 3-dehydroquinate dehy 29.2 1.2E+02 0.0026 21.9 4.2 78 84-164 35-133 (146)
173 KOG0237 Glycinamide ribonucleo 29.2 47 0.001 29.8 2.5 23 105-127 56-78 (788)
174 PF03641 Lysine_decarbox: Poss 29.1 30 0.00065 24.2 1.1 56 105-163 43-98 (133)
175 PRK06027 purU formyltetrahydro 29.1 3E+02 0.0066 22.0 9.2 30 105-134 153-182 (286)
176 PF05582 Peptidase_U57: YabG p 28.7 2.1E+02 0.0045 23.2 5.8 31 98-128 135-165 (287)
177 PRK12726 flagellar biosynthesi 28.3 3.8E+02 0.0082 22.9 8.6 17 116-132 284-300 (407)
178 KOG1014 17 beta-hydroxysteroid 28.3 2.6E+02 0.0057 22.9 6.4 42 80-122 85-131 (312)
179 COG1433 Uncharacterized conser 28.2 59 0.0013 22.7 2.4 30 106-135 54-83 (121)
180 PRK08384 thiamine biosynthesis 28.2 3.6E+02 0.0079 22.7 10.6 34 6-48 180-213 (381)
181 PRK09722 allulose-6-phosphate 27.9 2.9E+02 0.0063 21.4 6.8 50 83-135 99-148 (229)
182 TIGR00289 conserved hypothetic 27.6 2.9E+02 0.0063 21.3 10.6 91 8-127 2-95 (222)
183 PF09370 TIM-br_sig_trns: TIM- 27.6 62 0.0014 25.8 2.7 46 78-128 1-46 (268)
184 PRK15036 hydroxyisourate hydro 27.6 24 0.00052 25.2 0.4 13 150-163 122-134 (137)
185 PF01261 AP_endonuc_2: Xylose 27.5 2.4E+02 0.0052 20.3 8.4 80 20-119 70-157 (213)
186 PRK11914 diacylglycerol kinase 27.5 2.5E+02 0.0054 22.4 6.3 19 105-123 52-70 (306)
187 cd05821 TLP_Transthyretin Tran 27.4 24 0.00053 24.6 0.4 14 150-164 104-117 (121)
188 KOG2014 SMT3/SUMO-activating c 27.1 1.2E+02 0.0027 24.8 4.3 71 85-165 91-161 (331)
189 smart00095 TR_THY Transthyreti 26.6 26 0.00057 24.5 0.4 15 150-165 101-115 (121)
190 COG0615 TagD Cytidylyltransfer 26.5 54 0.0012 23.5 2.0 61 95-162 64-124 (140)
191 PRK09722 allulose-6-phosphate 26.5 3.1E+02 0.0067 21.3 8.0 45 80-126 155-199 (229)
192 COG0042 tRNA-dihydrouridine sy 26.3 2.4E+02 0.0051 23.1 6.0 54 75-133 121-179 (323)
193 PRK00211 sulfur relay protein 26.1 2.2E+02 0.0048 19.5 5.1 35 7-47 2-40 (119)
194 COG0426 FpaA Uncharacterized f 25.9 2.6E+02 0.0056 23.7 6.2 81 78-161 261-342 (388)
195 cd05008 SIS_GlmS_GlmD_1 SIS (S 25.8 2E+02 0.0043 19.2 4.8 39 5-49 45-83 (126)
196 KOG3180 Electron transfer flav 25.3 3.2E+02 0.007 21.1 6.7 25 104-128 101-125 (254)
197 PHA02031 putative DnaG-like pr 25.2 1.7E+02 0.0036 23.5 4.7 37 6-47 206-242 (266)
198 TIGR01088 aroQ 3-dehydroquinat 25.2 2.4E+02 0.0052 20.3 5.1 77 85-164 34-131 (141)
199 PF00070 Pyr_redox: Pyridine n 25.2 1.7E+02 0.0037 17.9 5.3 26 20-51 9-34 (80)
200 KOG3111 D-ribulose-5-phosphate 25.1 2.7E+02 0.0058 21.4 5.5 52 76-130 152-203 (224)
201 COG0036 Rpe Pentose-5-phosphat 25.0 3.3E+02 0.0072 21.1 7.4 43 81-126 157-199 (220)
202 PRK12475 thiamine/molybdopteri 24.9 2.3E+02 0.0049 23.4 5.7 54 107-169 108-161 (338)
203 PF00834 Ribul_P_3_epim: Ribul 24.9 78 0.0017 24.0 2.8 46 78-125 150-195 (201)
204 PTZ00170 D-ribulose-5-phosphat 24.8 2.5E+02 0.0053 21.6 5.6 26 101-126 178-203 (228)
205 cd00851 MTH1175 This uncharact 24.8 88 0.0019 20.2 2.8 29 107-135 53-81 (103)
206 PF06925 MGDG_synth: Monogalac 24.6 87 0.0019 22.6 2.9 23 105-128 77-99 (169)
207 PF12683 DUF3798: Protein of u 24.6 3.7E+02 0.0081 21.6 7.4 93 8-129 4-98 (275)
208 PF05198 IF3_N: Translation in 24.5 1E+02 0.0022 19.5 2.8 31 105-135 29-59 (76)
209 TIGR00730 conserved hypothetic 24.4 82 0.0018 23.4 2.8 60 102-165 83-142 (178)
210 COG4126 Hydantoin racemase [Am 24.4 65 0.0014 25.0 2.2 30 106-135 163-192 (230)
211 PRK14851 hypothetical protein; 24.1 2.4E+02 0.0053 25.7 6.1 70 96-173 113-184 (679)
212 COG0163 UbiX 3-polyprenyl-4-hy 24.0 2.1E+02 0.0046 21.6 4.8 36 6-47 2-37 (191)
213 cd01492 Aos1_SUMO Ubiquitin ac 23.8 1.6E+02 0.0035 22.0 4.4 61 96-165 91-151 (197)
214 TIGR02151 IPP_isom_2 isopenten 23.8 2E+02 0.0044 23.5 5.2 47 80-127 167-213 (333)
215 TIGR00655 PurU formyltetrahydr 23.7 3.8E+02 0.0083 21.4 8.2 26 105-130 148-173 (280)
216 cd01999 Argininosuccinate_Synt 23.7 4.5E+02 0.0097 22.2 10.2 25 105-129 94-118 (385)
217 cd07391 MPP_PF1019 Pyrococcus 23.6 64 0.0014 23.4 2.1 46 116-164 121-169 (172)
218 COG1697 DNA topoisomerase VI, 23.5 1.1E+02 0.0024 25.5 3.4 60 101-166 190-254 (356)
219 PLN02958 diacylglycerol kinase 23.4 3E+02 0.0065 23.9 6.4 53 83-137 134-187 (481)
220 PF01596 Methyltransf_3: O-met 23.3 2E+02 0.0043 21.8 4.7 32 97-128 98-132 (205)
221 PRK13964 coaD phosphopantethei 23.1 1E+02 0.0023 21.9 3.0 28 108-135 73-100 (140)
222 PLN02173 UDP-glucosyl transfer 23.1 1.8E+02 0.0039 25.0 4.9 42 1-48 1-42 (449)
223 smart00493 TOPRIM topoisomeras 22.8 1.5E+02 0.0034 17.8 3.5 26 7-32 48-73 (76)
224 PRK09875 putative hydrolase; P 22.7 2.8E+02 0.0062 22.3 5.7 50 78-128 138-189 (292)
225 TIGR00364 exsB protein. This p 22.5 3.3E+02 0.0071 20.2 10.8 23 107-129 101-123 (201)
226 cd02069 methionine_synthase_B1 22.4 2.2E+02 0.0048 21.7 4.9 30 103-132 125-154 (213)
227 PF01935 DUF87: Domain of unkn 22.3 46 0.001 25.2 1.1 45 117-165 23-68 (229)
228 TIGR02355 moeB molybdopterin s 22.2 2.9E+02 0.0064 21.4 5.6 53 107-168 106-158 (240)
229 PF02579 Nitro_FeMo-Co: Dinitr 22.0 62 0.0013 20.5 1.5 32 104-135 40-71 (94)
230 PF04007 DUF354: Protein of un 22.0 1.8E+02 0.0039 24.0 4.5 54 80-137 15-68 (335)
231 PRK08349 hypothetical protein; 22.0 2.3E+02 0.0051 21.0 4.9 34 7-49 1-34 (198)
232 PF05902 4_1_CTD: 4.1 protein 21.9 2.8E+02 0.0061 19.2 4.7 39 6-47 70-108 (114)
233 cd06361 PBP1_GPC6A_like Ligand 21.8 4.7E+02 0.01 21.8 12.8 29 102-130 243-271 (403)
234 cd04795 SIS SIS domain. SIS (S 21.8 1.9E+02 0.0042 17.6 3.9 36 5-46 46-81 (87)
235 PRK13398 3-deoxy-7-phosphohept 21.8 4.1E+02 0.0089 21.1 10.0 86 17-130 38-123 (266)
236 PRK08223 hypothetical protein; 21.8 2.3E+02 0.005 22.9 5.0 58 109-173 111-168 (287)
237 COG2183 Tex Transcriptional ac 21.8 94 0.002 28.7 3.0 58 106-165 373-430 (780)
238 cd00578 L-fuc_L-ara-isomerases 21.7 3.2E+02 0.0069 23.3 6.2 48 105-159 51-98 (452)
239 PRK13055 putative lipid kinase 21.6 4.3E+02 0.0092 21.5 6.7 55 79-135 20-76 (334)
240 COG1092 Predicted SAM-dependen 21.5 3E+02 0.0065 23.4 5.8 81 78-158 250-338 (393)
241 cd01485 E1-1_like Ubiquitin ac 21.5 2.5E+02 0.0054 21.0 5.0 63 96-167 91-156 (198)
242 PRK00074 guaA GMP synthase; Re 21.3 5.6E+02 0.012 22.4 11.0 34 7-48 216-249 (511)
243 PLN02476 O-methyltransferase 21.1 3.2E+02 0.007 21.9 5.7 45 83-128 158-205 (278)
244 cd06322 PBP1_ABC_sugar_binding 20.8 3E+02 0.0064 20.7 5.4 46 83-130 169-216 (267)
245 PRK05690 molybdopterin biosynt 20.7 3.3E+02 0.0071 21.1 5.6 66 96-170 102-168 (245)
246 COG1184 GCD2 Translation initi 20.6 3.6E+02 0.0079 22.0 5.9 11 118-128 188-198 (301)
247 PRK03972 ribosomal biogenesis 20.6 4E+02 0.0087 20.5 5.9 73 80-171 119-192 (208)
248 cd05014 SIS_Kpsf KpsF-like pro 20.5 2.3E+02 0.005 18.9 4.3 39 6-50 47-85 (128)
249 cd01994 Alpha_ANH_like_IV This 20.4 3.7E+02 0.0081 20.0 7.7 33 8-49 1-33 (194)
250 PRK14852 hypothetical protein; 20.4 3.1E+02 0.0067 26.4 6.1 70 96-173 402-473 (989)
251 TIGR02329 propionate_PrpR prop 20.3 4E+02 0.0086 23.5 6.5 68 85-167 20-90 (526)
252 PRK05437 isopentenyl pyrophosp 20.1 2.5E+02 0.0054 23.3 5.0 47 80-127 174-220 (352)
No 1
>PRK09982 universal stress protein UspD; Provisional
Probab=99.89 E-value=2.3e-22 Score=145.01 Aligned_cols=139 Identities=16% Similarity=0.135 Sum_probs=105.0
Q ss_pred CCCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHH
Q 030516 4 AETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEE 83 (176)
Q Consensus 4 ~~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (176)
|+|++||||+|+|+.+..|+++|..+|+.. +++++++||+++...... .... ...+...+...+..++.+++
T Consensus 1 ~~~k~ILvavD~S~~s~~al~~A~~lA~~~-----~a~l~llhV~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~l~~ 72 (142)
T PRK09982 1 MAYKHIGVAISGNEEDALLVNKALELARHN-----DAHLTLIHIDDGLSELYP--GIYF-PATEDILQLLKNKSDNKLYK 72 (142)
T ss_pred CCceEEEEEecCCcchHHHHHHHHHHHHHh-----CCeEEEEEEccCcchhch--hhhc-cchHHHHHHHHHHHHHHHHH
Confidence 569999999999999999999999999983 789999999875432210 0000 01122334445555556666
Q ss_pred HHHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcccchhcccccchhhhheeeccccccccc
Q 030516 84 AKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKSTISCFIWYLIFSRVELGMVNC 157 (176)
Q Consensus 84 ~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~gvs~~~~~~~~~~~~~~~~~~ 157 (176)
+.+.+. ...++.++..|+|++.|+++|++.++||||||+| ++++.+++ |+++ ..+--+++||++|+.
T Consensus 73 ~~~~~~---~~~~~~~v~~G~p~~~I~~~A~~~~aDLIVmG~~-~~~~~~~~-~va~--~V~~~s~~pVLvv~~ 139 (142)
T PRK09982 73 LTKNIQ---WPKTKLRIERGEMPETLLEIMQKEQCDLLVCGHH-HSFINRLM-PAYR--GMINKMSADLLIVPF 139 (142)
T ss_pred HHHhcC---CCcceEEEEecCHHHHHHHHHHHcCCCEEEEeCC-hhHHHHHH-HHHH--HHHhcCCCCEEEecC
Confidence 555442 2247788899999999999999999999999987 88899998 5776 667789999999874
No 2
>PRK15456 universal stress protein UspG; Provisional
Probab=99.88 E-value=1.1e-21 Score=141.12 Aligned_cols=139 Identities=14% Similarity=0.129 Sum_probs=103.0
Q ss_pred CCCEEEEEecCCH--hHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHH
Q 030516 5 ETQTMVVGIDDSE--QSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVE 82 (176)
Q Consensus 5 ~~~~ILVavD~s~--~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (176)
||++||||+|+|+ .+..|+++|..+|+. +++++++|++++..... .... ....+...+...+..++.++
T Consensus 1 m~~~ILv~vD~S~~~~s~~al~~A~~la~~------~~~l~llhv~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~l~ 71 (142)
T PRK15456 1 MYKTIIMPVDVFEMELSDKAVRHAEFLAQD------DGVIHLLHVLPGSASLS-LHRF--AADVRRFEEHLQHEAEERLQ 71 (142)
T ss_pred CCccEEEeccCCchhHHHHHHHHHHHHHhc------CCeEEEEEEecCccccc-cccc--ccchhhHHHHHHHHHHHHHH
Confidence 4899999999994 899999999999986 35999999997654221 1000 01112344555666677777
Q ss_pred HHHHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcccchhc-ccccchhhhheeecccccccc
Q 030516 83 EAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYK-STISCFIWYLIFSRVELGMVN 156 (176)
Q Consensus 83 ~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l-~gvs~~~~~~~~~~~~~~~~~ 156 (176)
++.+.+...+ .+++.++..|+|.+.|+++++++++||||||+||++ +.+++ +++++++ +--++.||++|+
T Consensus 72 ~~~~~~~~~~-~~v~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~~-~~~~llGS~a~~v--~~~a~~pVLvV~ 142 (142)
T PRK15456 72 TMVSHFTIDP-SRIKQHVRFGSVRDEVNELAEELGADVVVIGSRNPS-ISTHLLGSNASSV--IRHANLPVLVVR 142 (142)
T ss_pred HHHHHhCCCC-cceEEEEcCCChHHHHHHHHhhcCCCEEEEcCCCCC-ccceecCccHHHH--HHcCCCCEEEeC
Confidence 7766554333 468899999999999999999999999999999987 66665 5666644 556888888774
No 3
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.87 E-value=4.8e-21 Score=138.09 Aligned_cols=140 Identities=22% Similarity=0.321 Sum_probs=105.1
Q ss_pred EEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHHH
Q 030516 8 TMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEI 87 (176)
Q Consensus 8 ~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 87 (176)
+||||+|+|+.+.+|++||.++|... +++++++|+.+++......... ....+...+...+..++.++++.+.
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~-----~~~l~ll~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~ 73 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATK-----GQTIVLVHVHPPITSIPSSSGK--LEVASAYKQEEDKEAKELLLPYRCF 73 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCC-----CCcEEEEEeccCcccCCCCccc--hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999983 7899999998765332111110 0111233445556677788887777
Q ss_pred hhhcCCcceEEEEEcC-ChHHHHHHHHHhcCCcEEEEeccCCcccchhccc--ccchhhhheeec--cccccccc
Q 030516 88 CSSKSVHDFVVEVVEG-DARNILCEAVEKHHASILVVGSHGYGAIKRYKST--ISCFIWYLIFSR--VELGMVNC 157 (176)
Q Consensus 88 ~~~~~~~~v~~~v~~G-~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~g--vs~~~~~~~~~~--~~~~~~~~ 157 (176)
+...+ ..++..+..| +|++.|+++|++.++|+||||+||++.+.++++| +++++ +-.++ .||++|+.
T Consensus 74 ~~~~~-~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~~gssva~~V--i~~a~~~c~Vlvv~~ 145 (146)
T cd01989 74 CSRKG-VQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSDNHFSMKFKKSDVASSV--LKEAPDFCTVYVVSK 145 (146)
T ss_pred HhhcC-CeEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCCCceeecccCCchhHHH--HhcCCCCceEEEEeC
Confidence 76555 3578778776 7999999999999999999999999999988753 77755 44555 88888763
No 4
>PRK15005 universal stress protein F; Provisional
Probab=99.86 E-value=2.2e-20 Score=134.25 Aligned_cols=141 Identities=20% Similarity=0.216 Sum_probs=99.6
Q ss_pred CCCEEEEEecCCHh--HHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHH
Q 030516 5 ETQTMVVGIDDSEQ--STYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVE 82 (176)
Q Consensus 5 ~~~~ILVavD~s~~--s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (176)
||++||+|+|+|+. +.+|+++|.++|+.. +++++++|++++....... ........+ ..+...+..++.++
T Consensus 1 m~~~ILv~~D~s~~~~~~~a~~~a~~la~~~-----~~~l~ll~v~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~l~ 73 (144)
T PRK15005 1 MNRTILVPIDISDSELTQRVISHVEAEAKID-----DAEVHFLTVIPSLPYYASL-GLAYSAELP-AMDDLKAEAKSQLE 73 (144)
T ss_pred CCccEEEecCCCchhHHHHHHHHHHHHHhcc-----CCeEEEEEEEccCcccccc-cccccccch-HHHHHHHHHHHHHH
Confidence 47999999999998 579999999999983 7899999999764422111 000000001 12334455556666
Q ss_pred HHHHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcccchhc-ccccchhhhheeecccccccc
Q 030516 83 EAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYK-STISCFIWYLIFSRVELGMVN 156 (176)
Q Consensus 83 ~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l-~gvs~~~~~~~~~~~~~~~~~ 156 (176)
++.+.+...+ .+++.++..|+|.+.|+++++++++||||||+|+ +++.+++ +++++ ..+--++.||++|+
T Consensus 74 ~~~~~~~~~~-~~~~~~v~~G~p~~~I~~~a~~~~~DLIV~Gs~~-~~~~~~llGS~a~--~vl~~a~cpVlvVr 144 (144)
T PRK15005 74 EIIKKFKLPT-DRVHVHVEEGSPKDRILELAKKIPADMIIIASHR-PDITTYLLGSNAA--AVVRHAECSVLVVR 144 (144)
T ss_pred HHHHHhCCCC-CceEEEEeCCCHHHHHHHHHHHcCCCEEEEeCCC-CCchheeecchHH--HHHHhCCCCEEEeC
Confidence 6665554333 3578889999999999999999999999999995 5577766 45555 44556788888764
No 5
>PRK10116 universal stress protein UspC; Provisional
Probab=99.84 E-value=3.6e-20 Score=132.89 Aligned_cols=141 Identities=14% Similarity=0.148 Sum_probs=102.9
Q ss_pred CCCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHH
Q 030516 4 AETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEE 83 (176)
Q Consensus 4 ~~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (176)
|+|++|||++|+|+.+..++++|..+|++. +++++++|+++++....... ....++..+...++.++.+++
T Consensus 1 ~~~~~ILv~~D~s~~s~~al~~A~~lA~~~-----~a~l~ll~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~ 71 (142)
T PRK10116 1 MSYSNILVAVAVTPESQQLLAKAVSIARPV-----NGKISLITLASDPEMYNQFA----APMLEDLRSVMQEETQSFLDK 71 (142)
T ss_pred CCCceEEEEccCCcchHHHHHHHHHHHHHh-----CCEEEEEEEccCcccchhhh----HHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999983 67999999987653221110 011122333333344444443
Q ss_pred HHHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcccchhcccccchhhhheeeccccccccccC
Q 030516 84 AKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKSTISCFIWYLIFSRVELGMVNCFG 159 (176)
Q Consensus 84 ~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~gvs~~~~~~~~~~~~~~~~~~~~ 159 (176)
+. .+.+.......+..|++.+.|++++++.++||||||+|+++.+.+++ ++++ ..+--++.||++|+.+|
T Consensus 72 ~~---~~~~~~~~~~~~~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~~~~-s~a~--~v~~~~~~pVLvv~~~~ 141 (142)
T PRK10116 72 LI---QDADYPIEKTFIAYGELSEHILEVCRKHHFDLVICGNHNHSFFSRAS-CSAK--RVIASSEVDVLLVPLTG 141 (142)
T ss_pred HH---HhcCCCeEEEEEecCCHHHHHHHHHHHhCCCEEEEcCCcchHHHHHH-HHHH--HHHhcCCCCEEEEeCCC
Confidence 32 33342223466778999999999999999999999999999999886 5565 45777899999999877
No 6
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=99.83 E-value=7.8e-20 Score=131.62 Aligned_cols=138 Identities=14% Similarity=0.155 Sum_probs=94.1
Q ss_pred CCCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHH
Q 030516 4 AETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEE 83 (176)
Q Consensus 4 ~~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (176)
|+|++||||+|+|+.+..|+++|..+|+.. +++++++|+.++..... .+.. ....+...+...+..++.++.
T Consensus 1 ~~~~~ILvavD~S~~s~~al~~a~~la~~~-----~a~l~ll~v~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~l~~ 72 (144)
T PRK15118 1 MAYKHILIAVDLSPESKVLVEKAVSMARPY-----NAKVSLIHVDVNYSDLY--TGLI-DVNLGDMQKRISEETHHALTE 72 (144)
T ss_pred CCceEEEEEccCChhHHHHHHHHHHHHHhh-----CCEEEEEEEccChhhhh--hhhh-hcchHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999883 78999999953321110 0000 000111222233333344433
Q ss_pred HHHHhhhcCCcce-EEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcccchhcccccchhhhheeeccccccccc
Q 030516 84 AKEICSSKSVHDF-VVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKSTISCFIWYLIFSRVELGMVNC 157 (176)
Q Consensus 84 ~~~~~~~~~~~~v-~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~gvs~~~~~~~~~~~~~~~~~~ 157 (176)
.....+. ++ ...+..|+|.+.|+++|+++++||||||+|+ +.+.+ ++|+++ ..+--++.||++|+.
T Consensus 73 ---~~~~~~~-~~~~~~~~~G~p~~~I~~~a~~~~~DLIV~Gs~~-~~~~~-lgSva~--~v~~~a~~pVLvv~~ 139 (144)
T PRK15118 73 ---LSTNAGY-PITETLSGSGDLGQVLVDAIKKYDMDLVVCGHHQ-DFWSK-LMSSAR--QLINTVHVDMLIVPL 139 (144)
T ss_pred ---HHHhCCC-CceEEEEEecCHHHHHHHHHHHhCCCEEEEeCcc-cHHHH-HHHHHH--HHHhhCCCCEEEecC
Confidence 3333343 33 4556689999999999999999999999996 44444 556666 556678899999975
No 7
>PRK11175 universal stress protein UspE; Provisional
Probab=99.81 E-value=4e-19 Score=142.56 Aligned_cols=161 Identities=13% Similarity=0.004 Sum_probs=116.8
Q ss_pred CCCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHH
Q 030516 4 AETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEE 83 (176)
Q Consensus 4 ~~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (176)
|+|++||||+|+|+.+..|+++|+.+|+.. +++++++|+.++..... .... .....+...+...+..++.+++
T Consensus 1 ~~~~~ILv~~D~s~~~~~al~~a~~lA~~~-----~a~l~ll~v~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~l~~ 73 (305)
T PRK11175 1 AKYQNILVVIDPNQDDQPALRRAVYLAQRN-----GGKITAFLPIYDFSYEM-TTLL-SPDEREAMRQGVISQRTAWIRE 73 (305)
T ss_pred CCcceEEEEcCCCccccHHHHHHHHHHHhc-----CCCEEEEEeccCchhhh-hccc-chhHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999999999999983 78999999986543211 0000 0001111222233445566666
Q ss_pred HHHHhhhcCCcceEEEEE-cCChHHHHHHHHHhcCCcEEEEeccCCcccchhcccccchhhhheeeccccccccccCccc
Q 030516 84 AKEICSSKSVHDFVVEVV-EGDARNILCEAVEKHHASILVVGSHGYGAIKRYKSTISCFIWYLIFSRVELGMVNCFGYYS 162 (176)
Q Consensus 84 ~~~~~~~~~~~~v~~~v~-~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~gvs~~~~~~~~~~~~~~~~~~~~~~~ 162 (176)
+.+.+...+ .+++..+. .|++.+.|+++++++++||||+|+++++.+.++++|... -..+.-++.||++|+...+-.
T Consensus 74 ~~~~~~~~~-~~~~~~v~~~g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~~~gs~~-~~l~~~~~~pvlvv~~~~~~~ 151 (305)
T PRK11175 74 QAKPYLDAG-IPIEIKVVWHNRPFEAIIQEVIAGGHDLVVKMTHQHDKLESVIFTPTD-WHLLRKCPCPVLMVKDQDWPE 151 (305)
T ss_pred HHHHHhhcC-CceEEEEecCCCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhhccChhH-HHHHhcCCCCEEEecccccCC
Confidence 665554444 35777666 589999999999999999999999999999999876222 234577999999998754456
Q ss_pred ceeeeeeeeee
Q 030516 163 YLSIIKRTQIC 173 (176)
Q Consensus 163 ~~~~~~~~~~~ 173 (176)
|-+|..++|-.
T Consensus 152 ~~~Ilva~D~s 162 (305)
T PRK11175 152 GGKILVAVNVA 162 (305)
T ss_pred CCeEEEEeCCC
Confidence 88999988853
No 8
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=99.75 E-value=2.7e-17 Score=115.58 Aligned_cols=139 Identities=20% Similarity=0.249 Sum_probs=93.6
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHH
Q 030516 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEA 84 (176)
Q Consensus 5 ~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (176)
|+++||||+|+++.+..+++||..+|... +++|+++|+.+........... ..................
T Consensus 1 M~~~Ilv~~d~~~~~~~al~~a~~la~~~-----~~~i~~l~v~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 69 (140)
T PF00582_consen 1 MYKRILVAIDGSEESRRALRFALELAKRS-----GAEITLLHVIPPPPQYSFSAAE------DEESEEEAEEEEQARQAE 69 (140)
T ss_dssp -TSEEEEEESSSHHHHHHHHHHHHHHHHH-----TCEEEEEEEEESCHCHHHHHHH------HHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHhh-----CCeEEEEEeecccccccccccc------ccccccccchhhhhhhHH
Confidence 57999999999999999999999999983 7899999999877543100000 000000000000000000
Q ss_pred HHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcccchhccc-ccchhhhheeecccccccc
Q 030516 85 KEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKST-ISCFIWYLIFSRVELGMVN 156 (176)
Q Consensus 85 ~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~g-vs~~~~~~~~~~~~~~~~~ 156 (176)
.......+.......+..|++.+.|+++++++++|+||||+++++.+.++++| +++ ..+.-+..||++|+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~~gs~~~--~l~~~~~~pVlvv~ 140 (140)
T PF00582_consen 70 AEEAEAEGGIVIEVVIESGDVADAIIEFAEEHNADLIVMGSRGRSGLERLLFGSVAE--KLLRHAPCPVLVVP 140 (140)
T ss_dssp HHHHHHHTTSEEEEEEEESSHHHHHHHHHHHTTCSEEEEESSSTTSTTTSSSHHHHH--HHHHHTSSEEEEEE
T ss_pred HHHHhhhccceeEEEEEeeccchhhhhccccccceeEEEeccCCCCccCCCcCCHHH--HHHHcCCCCEEEeC
Confidence 01122223345777788899999999999999999999999999999998754 555 33445667777764
No 9
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.75 E-value=7.6e-17 Score=113.65 Aligned_cols=130 Identities=12% Similarity=0.131 Sum_probs=100.2
Q ss_pred EEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHHH
Q 030516 8 TMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEI 87 (176)
Q Consensus 8 ~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 87 (176)
+||||+|+++.+..++++|..+|.. .+++|+++|+++.+..... ...+...+..++.++.+.+.
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~-----~~~~v~ll~v~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~ 64 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARA-----QNGEIIPLNVIEVPNHSSP-----------SQLEVNVQRARKLLRQAERI 64 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhc-----CCCeEEEEEEEecCCCCCc-----------chhHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999998 3789999999986543210 01223345667777877777
Q ss_pred hhhcCCcceEEEEE-cCChHHHHHHHHHhcCCcEEEEeccCCcccchhccc-ccchhhhheeecccccccc
Q 030516 88 CSSKSVHDFVVEVV-EGDARNILCEAVEKHHASILVVGSHGYGAIKRYKST-ISCFIWYLIFSRVELGMVN 156 (176)
Q Consensus 88 ~~~~~~~~v~~~v~-~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~g-vs~~~~~~~~~~~~~~~~~ 156 (176)
+.+.+. +++..+. .|++.+.|+++++++++|+||||+++++.+.++++| +++ ..+.-++.||++|+
T Consensus 65 ~~~~g~-~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~lGs~~~--~v~~~~~~pvlvv~ 132 (132)
T cd01988 65 AASLGV-PVHTIIRIDHDIASGILRTAKERQADLIIMGWHGSTSLRDRLFGGVID--QVLESAPCDVAVVK 132 (132)
T ss_pred hhhcCC-ceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCCCCCccceecCchHH--HHHhcCCCCEEEeC
Confidence 777664 5777665 478999999999999999999999999999776654 444 44566777887663
No 10
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=99.74 E-value=3.6e-17 Score=114.69 Aligned_cols=122 Identities=11% Similarity=0.120 Sum_probs=91.6
Q ss_pred EEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHHH
Q 030516 8 TMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEI 87 (176)
Q Consensus 8 ~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 87 (176)
+||||+|+++.+..++++|..+|.+. +++++++|+.++.... . .+..++.++.+.+.
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~-----~~~l~ll~v~~~~~~~--------------~----~~~~~~~l~~~~~~ 57 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRL-----KAPWYVVYVETPRLNR--------------L----SEAERRRLAEALRL 57 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHh-----CCCEEEEEEecCcccc--------------C----CHHHHHHHHHHHHH
Confidence 69999999999999999999999983 7799999998754310 0 12234455666655
Q ss_pred hhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcccchhccc-ccchhhhheeeccccccc
Q 030516 88 CSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKST-ISCFIWYLIFSRVELGMV 155 (176)
Q Consensus 88 ~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~g-vs~~~~~~~~~~~~~~~~ 155 (176)
+.+.+. ++ ..+..|++++.|.++++++++|+||||+++++.+.++++| +++.+.... .+.||+++
T Consensus 58 ~~~~~~-~~-~~~~~~~~~~~I~~~~~~~~~dllviG~~~~~~~~~~~~Gs~~~~v~~~a-~~~~v~v~ 123 (124)
T cd01987 58 AEELGA-EV-VTLPGDDVAEAIVEFAREHNVTQIVVGKSRRSRWRELFRGSLVDRLLRRA-GNIDVHIV 123 (124)
T ss_pred HHHcCC-EE-EEEeCCcHHHHHHHHHHHcCCCEEEeCCCCCchHHHHhcccHHHHHHHhC-CCCeEEEe
Confidence 555542 22 2345678999999999999999999999999999998854 555444444 47788765
No 11
>PRK11175 universal stress protein UspE; Provisional
Probab=99.71 E-value=2.3e-16 Score=126.53 Aligned_cols=146 Identities=12% Similarity=0.131 Sum_probs=100.7
Q ss_pred CCCEEEEEecCCHh-------HHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHH
Q 030516 5 ETQTMVVGIDDSEQ-------STYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIA 77 (176)
Q Consensus 5 ~~~~ILVavD~s~~-------s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (176)
.+++||+|+|+|+. +..++++|..+|.. . .+++++++|+++..........+ ........+...+..
T Consensus 151 ~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~---~-~~a~l~ll~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 224 (305)
T PRK11175 151 EGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQ---L-NHAEVHLVNAYPVTPINIAIELP--EFDPSVYNDAIRGQH 224 (305)
T ss_pred CCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhh---C-cCCceEEEEEecCcchhcccccc--ccchhhHHHHHHHHH
Confidence 47899999999865 36899999999987 2 16799999998755422110000 000111222233333
Q ss_pred HHHHHHHHHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcccchhccc-ccchhhhheeecccccccc
Q 030516 78 ARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKST-ISCFIWYLIFSRVELGMVN 156 (176)
Q Consensus 78 ~~~l~~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~g-vs~~~~~~~~~~~~~~~~~ 156 (176)
.+.+++ .....+......++..|++.+.|+++++++++||||||+++++++.++|+| +++ ..+--++.||++|+
T Consensus 225 ~~~l~~---~~~~~~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~~~llGS~a~--~v~~~~~~pVLvv~ 299 (305)
T PRK11175 225 LLAMKA---LRQKFGIDEEQTHVEEGLPEEVIPDLAEHLDAELVILGTVGRTGLSAAFLGNTAE--HVIDHLNCDLLAIK 299 (305)
T ss_pred HHHHHH---HHHHhCCChhheeeccCCHHHHHHHHHHHhCCCEEEECCCccCCCcceeecchHH--HHHhcCCCCEEEEc
Confidence 333443 333334322346678899999999999999999999999999999999865 444 55667889999999
Q ss_pred ccCcc
Q 030516 157 CFGYY 161 (176)
Q Consensus 157 ~~~~~ 161 (176)
+.||-
T Consensus 300 ~~~~~ 304 (305)
T PRK11175 300 PDGYV 304 (305)
T ss_pred CCCCC
Confidence 88874
No 12
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=99.65 E-value=5.6e-15 Score=120.89 Aligned_cols=109 Identities=14% Similarity=0.142 Sum_probs=80.9
Q ss_pred CCCCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHH
Q 030516 3 TAETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVE 82 (176)
Q Consensus 3 ~~~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (176)
+++|+|||||+|+|+.+++|+++|..+|+.. +.+++|+++||.+....... .+...+..++.++
T Consensus 2 ~~~ykkILVavDGSe~S~~Al~~AielA~~~---g~~AeL~lL~Vv~~~~~~~~-------------~~~~~~~~eelle 65 (357)
T PRK12652 2 MMAANRLLVPVADSVTVRQTVAYAVESAEEA---AETPTVHLVAAASGRAVDPE-------------GQDELAAAEELLE 65 (357)
T ss_pred CcccCeEEEEeCCCHHHHHHHHHHHHHHHhc---CCCCEEEEEEEecCcccccc-------------hhHHHHHHHHHHH
Confidence 5899999999999999999999999999872 11589999999885432110 1122233444555
Q ss_pred HHHHHhhh------cCCcceEEEEEc--------CChHHHHHHHHHhcCCcEEEEeccCC
Q 030516 83 EAKEICSS------KSVHDFVVEVVE--------GDARNILCEAVEKHHASILVVGSHGY 128 (176)
Q Consensus 83 ~~~~~~~~------~~~~~v~~~v~~--------G~~~~~I~~~a~~~~~DlIV~Gs~g~ 128 (176)
++.+.+.+ .+ .+++..+.. |+|++.|+++|+++++|+||||..-.
T Consensus 66 ~~~~~~~~~l~~~~~g-V~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~ 124 (357)
T PRK12652 66 RVEVWATEDLGDDASS-VTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEYN 124 (357)
T ss_pred HHHHHHHHhhhcccCC-CceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCCC
Confidence 55555443 24 467777765 89999999999999999999997654
No 13
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=99.64 E-value=1.2e-14 Score=101.04 Aligned_cols=128 Identities=22% Similarity=0.316 Sum_probs=97.2
Q ss_pred EEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHHH
Q 030516 8 TMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEI 87 (176)
Q Consensus 8 ~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 87 (176)
+||||+|+++.+..++++|..+|... +++++++|+.+....... ...+......++.++++...
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~-----~~~i~~l~v~~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~~ 64 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRL-----GAELVLLHVVDPPPSSAA-----------ELAELLEEEARALLEALREA 64 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhc-----CCEEEEEEEecCCCCcch-----------hHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999993 789999999876543210 23344556667777777766
Q ss_pred hhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcccchhccc-ccchhhhheeecccccc
Q 030516 88 CSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKST-ISCFIWYLIFSRVELGM 154 (176)
Q Consensus 88 ~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~g-vs~~~~~~~~~~~~~~~ 154 (176)
+...+ .+++..+..|++.+.|.+++++.++|+||+|+++++.+.++++| .++.+. --+..||++
T Consensus 65 ~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~dlvvig~~~~~~~~~~~~~~~~~~ll--~~~~~pvli 129 (130)
T cd00293 65 LAEAG-VKVETVVLEGDPAEAILEAAEELGADLIVMGSRGRSGLRRLLLGSVAERVL--RHAPCPVLV 129 (130)
T ss_pred HhcCC-CceEEEEecCCCHHHHHHHHHHcCCCEEEEcCCCCCccceeeeccHHHHHH--hCCCCCEEe
Confidence 54444 46888888999999999999999999999999999998777654 333222 225666664
No 14
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=99.64 E-value=1.7e-14 Score=103.55 Aligned_cols=148 Identities=21% Similarity=0.221 Sum_probs=111.6
Q ss_pred CCCCEEEEEec-CCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHH
Q 030516 4 AETQTMVVGID-DSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVE 82 (176)
Q Consensus 4 ~~~~~ILVavD-~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (176)
.++++|++++| +++.+..+++++..++... ++.+.++++.+.............................+.++
T Consensus 3 ~~~~~il~~~d~~s~~~~~a~~~a~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (154)
T COG0589 3 AMYKKILVAVDVGSEAAEKALEEAVALAKRL-----GAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLA 77 (154)
T ss_pred cccceEEEEeCCCCHHHHHHHHHHHHHHHhc-----CCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHH
Confidence 57899999999 9999999999999999983 67999999887655332111110000011123444566677788
Q ss_pred HHHHHhhhcCCcceEEEEEcCCh-HHHHHHHHHhcCCcEEEEeccCCcccchhcc-cccchhhhheeecccccccccc
Q 030516 83 EAKEICSSKSVHDFVVEVVEGDA-RNILCEAVEKHHASILVVGSHGYGAIKRYKS-TISCFIWYLIFSRVELGMVNCF 158 (176)
Q Consensus 83 ~~~~~~~~~~~~~v~~~v~~G~~-~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~-gvs~~~~~~~~~~~~~~~~~~~ 158 (176)
.+.+.+...+...++..+..|+| .+.|+++++++++|+||||+++++.+.++++ ++++ ..+.-+..||+|++..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~a~~~~adliV~G~~g~~~l~~~llGsvs~--~v~~~~~~pVlvv~~~ 153 (154)
T COG0589 78 EAKALAEAAGVPVVETEVVEGSPSAEEILELAEEEDADLIVVGSRGRSGLSRLLLGSVAE--KVLRHAPCPVLVVRSE 153 (154)
T ss_pred HHHHHHHHcCCCeeEEEEecCCCcHHHHHHHHHHhCCCEEEECCCCCccccceeeehhHH--HHHhcCCCCEEEEccC
Confidence 77777777764225888899998 7999999999999999999999999999664 4555 6677889999998865
No 15
>PRK10490 sensor protein KdpD; Provisional
Probab=98.87 E-value=2.7e-08 Score=90.76 Aligned_cols=124 Identities=8% Similarity=0.056 Sum_probs=85.1
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHH
Q 030516 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEA 84 (176)
Q Consensus 5 ~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (176)
...+|||++++++.+.++++++.++|.+. +++++++||.++.... ...+. ++.+.+.
T Consensus 249 ~~eriLV~v~~~~~~~~lIr~~~rlA~~~-----~a~~~~l~V~~~~~~~--------------~~~~~----~~~l~~~ 305 (895)
T PRK10490 249 TRDAILLCIGHNTGSEKLVRTAARLAARL-----GSVWHAVYVETPRLHR--------------LPEKK----RRAILSA 305 (895)
T ss_pred cCCeEEEEECCCcchHHHHHHHHHHHHhc-----CCCEEEEEEecCCcCc--------------CCHHH----HHHHHHH
Confidence 45789999999999999999999999993 7899999997543211 11122 2223233
Q ss_pred HHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcccchhcc-cccchhhhheeecccccccc
Q 030516 85 KEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKS-TISCFIWYLIFSRVELGMVN 156 (176)
Q Consensus 85 ~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~-gvs~~~~~~~~~~~~~~~~~ 156 (176)
.+.+++.|. ++ ..+..+++++.|+++|++++++.||||.++++.+ |+. ++.+.+.... ..+.|.+|+
T Consensus 306 ~~lA~~lGa-~~-~~~~~~dva~~i~~~A~~~~vt~IViG~s~~~~~--~~~~s~~~~l~r~~-~~idi~iv~ 373 (895)
T PRK10490 306 LRLAQELGA-ET-ATLSDPAEEKAVLRYAREHNLGKIIIGRRASRRW--WRRESFADRLARLG-PDLDLVIVA 373 (895)
T ss_pred HHHHHHcCC-EE-EEEeCCCHHHHHHHHHHHhCCCEEEECCCCCCCC--ccCCCHHHHHHHhC-CCCCEEEEe
Confidence 346666664 22 2344456999999999999999999999998876 433 4444332222 456666664
No 16
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=98.72 E-value=1.7e-07 Score=82.77 Aligned_cols=107 Identities=16% Similarity=0.168 Sum_probs=84.6
Q ss_pred CCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHH
Q 030516 6 TQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAK 85 (176)
Q Consensus 6 ~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 85 (176)
..+|||+++.++.+.+.+++|.++|.+. +++++++||..+.... ..+..+..+.+..
T Consensus 248 ~e~ilvcI~~~~~~e~liR~a~RlA~~~-----~a~~~av~v~~~~~~~------------------~~~~~~~~l~~~~ 304 (890)
T COG2205 248 RERILVCISGSPGSEKLIRRAARLASRL-----HAKWTAVYVETPELHR------------------LSEKEARRLHENL 304 (890)
T ss_pred cceEEEEECCCCchHHHHHHHHHHHHHh-----CCCeEEEEEecccccc------------------ccHHHHHHHHHHH
Confidence 4789999999999999999999999994 7899999997655422 1123345566666
Q ss_pred HHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcccchhccc
Q 030516 86 EICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKST 137 (176)
Q Consensus 86 ~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~g 137 (176)
..+++.|. ++ ..+..++.+++|.+||+.+++..||+|.+.++.++++|.+
T Consensus 305 ~Lae~lGa-e~-~~l~~~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~~~~~ 354 (890)
T COG2205 305 RLAEELGA-EI-VTLYGGDVAKAIARYAREHNATKIVIGRSRRSRWRRLFKG 354 (890)
T ss_pred HHHHHhCC-eE-EEEeCCcHHHHHHHHHHHcCCeeEEeCCCcchHHHHHhcc
Confidence 67777764 22 2344577999999999999999999999999999888753
No 17
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=97.66 E-value=0.00032 Score=45.66 Aligned_cols=68 Identities=13% Similarity=0.121 Sum_probs=57.7
Q ss_pred EEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHHHh
Q 030516 9 MVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEIC 88 (176)
Q Consensus 9 ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 88 (176)
|+++++++.+|..++.++.+++.. +.+++.+|+-
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~~~------~~~~~~~~~~---------------------------------------- 34 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLKSG------GPEVVALVVV---------------------------------------- 34 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHHhc------CCCEEEEEeH----------------------------------------
Confidence 689999999999999999998744 5588888873
Q ss_pred hhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcccchhccc
Q 030516 89 SSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKST 137 (176)
Q Consensus 89 ~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~g 137 (176)
...+.+.+.++++++|+|+.|+++.......+++
T Consensus 35 ---------------~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~~~~ 68 (86)
T cd01984 35 ---------------AFVRILKRLAAEEGADVIILGHNADDVAGRRLGA 68 (86)
T ss_pred ---------------HHHHHHHHHHHHcCCCEEEEcCCchhhhhhccCc
Confidence 4567788889999999999999999888887764
No 18
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=97.42 E-value=0.0054 Score=56.09 Aligned_cols=116 Identities=12% Similarity=0.139 Sum_probs=66.1
Q ss_pred CCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCC---CccC---CccchhHHHHHHHHH
Q 030516 6 TQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGP---GAVE---VLPHVDSDFKKIAAR 79 (176)
Q Consensus 6 ~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~ 79 (176)
.++|.+.+=+.++.+.|+.+|.+++.. ++.+++++|..+........... ...+ ......+..++..++
T Consensus 630 ~~~v~~~F~GG~DDREALa~a~rma~~-----p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~D~~ 704 (832)
T PLN03159 630 SHHVAVLFFGGPDDREALAYAWRMSEH-----PGITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEE 704 (832)
T ss_pred ceeEEEEecCCcchHHHHHHHHHHhcC-----CCeEEEEEEEEcccccccccccccccccccccccccccchhHHHHHHH
Confidence 458999999999999999999999998 58899999998653321100000 0000 000112223334455
Q ss_pred HHHHHHHHhhhcCCcceEEEEE-cCC-hHHHHHHHHHhcCCcEEEEeccCC
Q 030516 80 VVEEAKEICSSKSVHDFVVEVV-EGD-ARNILCEAVEKHHASILVVGSHGY 128 (176)
Q Consensus 80 ~l~~~~~~~~~~~~~~v~~~v~-~G~-~~~~I~~~a~~~~~DlIV~Gs~g~ 128 (176)
.+++++......+.+.+.-+++ .|. ....|-+.. +++||+|+|+++.
T Consensus 705 ~~~ef~~~~~~~~~v~y~E~~V~~~~e~~~~l~~~~--~~ydL~iVGr~~~ 753 (832)
T PLN03159 705 YINEFRARNAGNESIVYTEKVVSNGEETVAAIRSMD--SAHDLFIVGRGQG 753 (832)
T ss_pred HHHHHHHhcCCCCceEEEEEecCCHHHHHHHHHHhh--ccCcEEEEecCCC
Confidence 6666665543333233333333 333 223333332 2599999998643
No 19
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=96.89 E-value=0.023 Score=42.32 Aligned_cols=99 Identities=14% Similarity=0.204 Sum_probs=64.0
Q ss_pred EEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHHH
Q 030516 8 TMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEI 87 (176)
Q Consensus 8 ~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 87 (176)
+|+|+++++.+|..++..+.+++... +.++.++|+-..... ...+..+.+...
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~-----~~~v~~v~vd~g~~~----------------------~~~~~~~~~~~~ 53 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKL-----KIRLIAAHVDHGLRP----------------------ESDEEAEFVQQF 53 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHc-----CCCEEEEEeCCCCCh----------------------hHHHHHHHHHHH
Confidence 58999999999999999998887762 558999988432210 112223344445
Q ss_pred hhhcCCcceEEEEE-cC--------ChH--------HHHHHHHHhcCCcEEEEeccCCcccchh
Q 030516 88 CSSKSVHDFVVEVV-EG--------DAR--------NILCEAVEKHHASILVVGSHGYGAIKRY 134 (176)
Q Consensus 88 ~~~~~~~~v~~~v~-~G--------~~~--------~~I~~~a~~~~~DlIV~Gs~g~~~l~~~ 134 (176)
++..+. ++...-. .. ... ..+.+.+++++++.|+.|.+.......+
T Consensus 54 ~~~~gi-~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~D~~e~~ 116 (189)
T TIGR02432 54 CKKLNI-PLEIKKVDVKALAKGKKKNLEEAAREARYDFFEEIAKKHGADYILTAHHADDQAETI 116 (189)
T ss_pred HHHcCC-CEEEEEecchhhccccCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCccHHHHHHH
Confidence 555553 2332211 11 122 5788899999999999999987654443
No 20
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=96.20 E-value=0.072 Score=39.40 Aligned_cols=130 Identities=10% Similarity=0.043 Sum_probs=75.9
Q ss_pred EEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHHH
Q 030516 8 TMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEI 87 (176)
Q Consensus 8 ~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 87 (176)
+|+|++++..+|.-++..+.+..... +.++.++|+-..... ...+..+.+.+.
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~-----~~~v~~v~id~~~~~----------------------~~~~~~~~~~~~ 53 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRL-----GLRLVAVHVDHGLRP----------------------ESDEEAAFVADL 53 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHc-----CCcEEEEEecCCCCc----------------------hHHHHHHHHHHH
Confidence 58999999999999999998877652 468999988432110 002233334444
Q ss_pred hhhcCCcceEEE---EEcCC-h----------HHHHHHHHHhcCCcEEEEeccCCcccchhcc----c-ccchhhh--he
Q 030516 88 CSSKSVHDFVVE---VVEGD-A----------RNILCEAVEKHHASILVVGSHGYGAIKRYKS----T-ISCFIWY--LI 146 (176)
Q Consensus 88 ~~~~~~~~v~~~---v~~G~-~----------~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~----g-vs~~~~~--~~ 146 (176)
+...+. +..+. ...+. . -..+.++|++++++.|+.|.+........+. | ....... ..
T Consensus 54 ~~~~~i-~~~~~~~~~~~~~~~~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~dD~~e~~l~~l~~g~~~~~l~~~~~~ 132 (185)
T cd01992 54 CAKLGI-PLYILVVALAPKPGGNLEAAAREARYDFFAEIAKEHGADVLLTAHHADDQAETVLMRLLRGSGLRGLAGMPAR 132 (185)
T ss_pred HHHcCC-cEEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcHHHHHHHHHHHHccCCcccccCCCcc
Confidence 444443 33332 11111 1 1567789999999999999987765544332 1 0011110 11
Q ss_pred eeccccccccccCccccee
Q 030516 147 FSRVELGMVNCFGYYSYLS 165 (176)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~ 165 (176)
..+..+.+++|+...+...
T Consensus 133 ~~~~~~~virPl~~~~k~e 151 (185)
T cd01992 133 IPFGGGRLIRPLLGITRAE 151 (185)
T ss_pred cCCCCCeEECCCCCCCHHH
Confidence 2244566778877655433
No 21
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=95.46 E-value=0.4 Score=35.61 Aligned_cols=100 Identities=17% Similarity=0.253 Sum_probs=58.5
Q ss_pred EEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHHH
Q 030516 8 TMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEI 87 (176)
Q Consensus 8 ~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 87 (176)
+|+|++.+..+|..++..+..+.... +.++.++|+-...... ..+..+.+.+.
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~-----~~~~~~~~vdh~~~~~----------------------s~~~~~~v~~~ 53 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRN-----GIKLIAVHVDHGLREE----------------------SDEEAEFVEEI 53 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTT-----TTEEEEEEEE-STSCC----------------------HHHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhc-----CCCeEEEEEecCCCcc----------------------cchhHHHHHHH
Confidence 69999999999999999999998873 5699999995432211 01122333445
Q ss_pred hhhcCCcceEEEEEc-----CC-h--------HHHHHHHHHhcCCcEEEEeccCCcccchhc
Q 030516 88 CSSKSVHDFVVEVVE-----GD-A--------RNILCEAVEKHHASILVVGSHGYGAIKRYK 135 (176)
Q Consensus 88 ~~~~~~~~v~~~v~~-----G~-~--------~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l 135 (176)
+...+. +..+.... +. . -+.+.+.|++++++.|++|.|.-....-++
T Consensus 54 ~~~~~i-~~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~dD~~ET~l 114 (182)
T PF01171_consen 54 CEQLGI-PLYIVRIDEDRKKGSNIEECARELRYQFLREIAKEEGCNKIALGHHLDDQAETFL 114 (182)
T ss_dssp HHHTT--EEEEEE--CHCCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BHHHHHHHHH
T ss_pred HHhcCC-ceEEEEeeeeecccCCHHHHHHHHHHHHHHHhhhcccccceeecCcCCccHHHHH
Confidence 555553 23332222 11 1 146778999999999999999765554444
No 22
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.83 E-value=1.3 Score=37.90 Aligned_cols=92 Identities=14% Similarity=0.130 Sum_probs=64.6
Q ss_pred cCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHHHhhhcCC
Q 030516 14 DDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSV 93 (176)
Q Consensus 14 D~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 93 (176)
|+.-....||..|++.|.+. +.+|..+++.++..... ......-..+-+..+.+.+.+.+.
T Consensus 32 DLRl~DN~aL~~A~~~a~~~-----~~~vl~vyi~dp~~~~~--------------~~~r~~Fl~esL~~L~~~L~~~g~ 92 (454)
T TIGR00591 32 DQRVQDNWALIAAQTLALKK-----KLPLHVCFCLVDFFLAA--------------TRRHYFFMLGGLDEVANECERLII 92 (454)
T ss_pred chhccCCHHHHHHHHHHHHc-----CCCEEEEEEeCCCcccc--------------cHHHHHHHHHHHHHHHHHHHHcCC
Confidence 56666678888888776642 34789998887643220 123345556666667777766653
Q ss_pred cceEEEEEcCChHHHHHHHHHhcCCcEEEEeccC
Q 030516 94 HDFVVEVVEGDARNILCEAVEKHHASILVVGSHG 127 (176)
Q Consensus 94 ~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g 127 (176)
...+..|++.+.|.+.+++.+++.|+.....
T Consensus 93 ---~L~v~~g~~~~~l~~l~~~~~i~~V~~~~~~ 123 (454)
T TIGR00591 93 ---PFHLLDGPPKELLPYFVDLHAAAAVVTDFSP 123 (454)
T ss_pred ---ceEEeecChHHHHHHHHHHcCCCEEEEeccc
Confidence 3456789999999999999999999987643
No 23
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=92.14 E-value=4.8 Score=31.65 Aligned_cols=100 Identities=22% Similarity=0.264 Sum_probs=60.6
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHH
Q 030516 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEA 84 (176)
Q Consensus 5 ~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (176)
...+|+|++++..+|...+..+..+..+. +.+.+|..+|+-..... ..++ . +
T Consensus 28 ~~~kilVa~SGG~DS~~LL~ll~~l~~~~---~~~~~l~av~vd~g~~~---------------~~~~-------~---~ 79 (258)
T PRK10696 28 EGDRVMVCLSGGKDSYTLLDILLNLQKRA---PINFELVAVNLDQKQPG---------------FPEH-------V---L 79 (258)
T ss_pred CCCEEEEEecCCHHHHHHHHHHHHHHHhC---CCCeEEEEEEecCCCCC---------------CCHH-------H---H
Confidence 35689999999999999998887776551 12457888887332110 0011 1 1
Q ss_pred HHHhhhcCCcceEEEEE-----------cCCh---------HHHHHHHHHhcCCcEEEEeccCCcccch
Q 030516 85 KEICSSKSVHDFVVEVV-----------EGDA---------RNILCEAVEKHHASILVVGSHGYGAIKR 133 (176)
Q Consensus 85 ~~~~~~~~~~~v~~~v~-----------~G~~---------~~~I~~~a~~~~~DlIV~Gs~g~~~l~~ 133 (176)
.+.+++.+. ++.+.-. .+.. -..+.+.|+++++|.|++|.+.-.....
T Consensus 80 ~~~~~~lgI-~~~v~~~~~~~~~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~Ia~GH~~dD~~Et 147 (258)
T PRK10696 80 PEYLESLGV-PYHIEEQDTYSIVKEKIPEGKTTCSLCSRLRRGILYRTARELGATKIALGHHRDDILET 147 (258)
T ss_pred HHHHHHhCC-CEEEEEecchhhhhhhhccCCChhHHHHHHHHHHHHHHHHHcCCCEEEEcCchHHHHHH
Confidence 334444443 2332111 1111 1456788999999999999997654443
No 24
>PRK12342 hypothetical protein; Provisional
Probab=92.02 E-value=1.3 Score=35.00 Aligned_cols=86 Identities=13% Similarity=0.013 Sum_probs=52.5
Q ss_pred CCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHHHhhhcCCc
Q 030516 15 DSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVH 94 (176)
Q Consensus 15 ~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 94 (176)
.++...+|++.|+++. +. |.+|+++++-++... ....+.++.+.=.+.+.
T Consensus 33 iNp~D~~AlE~AlrLk-~~-----g~~Vtvls~Gp~~a~-----------------------~~~l~r~alamGaD~av- 82 (254)
T PRK12342 33 ISQFDLNAIEAASQLA-TD-----GDEIAALTVGGSLLQ-----------------------NSKVRKDVLSRGPHSLY- 82 (254)
T ss_pred CChhhHHHHHHHHHHh-hc-----CCEEEEEEeCCChHh-----------------------HHHHHHHHHHcCCCEEE-
Confidence 5678899999999998 52 679999988553321 01112222222111111
Q ss_pred ceEEEEEc-CCh---HHHHHHHHHhcCCcEEEEeccCCcc
Q 030516 95 DFVVEVVE-GDA---RNILCEAVEKHHASILVVGSHGYGA 130 (176)
Q Consensus 95 ~v~~~v~~-G~~---~~~I~~~a~~~~~DlIV~Gs~g~~~ 130 (176)
.++-.... .|+ +..|..++++.++|||+.|...-..
T Consensus 83 li~d~~~~g~D~~ata~~La~~i~~~~~DLVl~G~~s~D~ 122 (254)
T PRK12342 83 LVQDAQLEHALPLDTAKALAAAIEKIGFDLLLFGEGSGDL 122 (254)
T ss_pred EEecCccCCCCHHHHHHHHHHHHHHhCCCEEEEcCCcccC
Confidence 12111112 344 7999999999999999999877543
No 25
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=91.89 E-value=2.3 Score=39.36 Aligned_cols=121 Identities=7% Similarity=0.123 Sum_probs=65.6
Q ss_pred CEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCC-CCCc-cCCccchhHHHHHHHHHHHHHH
Q 030516 7 QTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLA-GPGA-VEVLPHVDSDFKKIAARVVEEA 84 (176)
Q Consensus 7 ~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~l~~~ 84 (176)
-+||+|+...++....+..+-..... ......++++|.++...-..+.- .... ....+...+ ...+.++....+
T Consensus 459 lriL~cv~~~~~v~~li~Lle~s~~t---~~sp~~vy~lhLveL~~r~~~~l~~h~~~~~~~~~~~~-~~~~~~~i~~af 534 (832)
T PLN03159 459 LRMLVCVHTPRNVPTIINLLEASHPT---KRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNR-TQAQSDHIINAF 534 (832)
T ss_pred eeEEEEeccCCcHHHHHHHHHhcCCC---CCCCceEEEEEEEeecCCCccceeeeeccccccccccc-ccccccHHHHHH
Confidence 47999999888877777665443222 11356899999987553221100 0000 000000000 111123444433
Q ss_pred HHHhhhcCCcceEE--EEEc-CChHHHHHHHHHhcCCcEEEEeccCCccc
Q 030516 85 KEICSSKSVHDFVV--EVVE-GDARNILCEAVEKHHASILVVGSHGYGAI 131 (176)
Q Consensus 85 ~~~~~~~~~~~v~~--~v~~-G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l 131 (176)
...-+..+.+.++. .+.. .+..+.|+..|++.++++|+++-|.+...
T Consensus 535 ~~~~~~~~~v~v~~~t~vs~~~~mh~dIc~~A~d~~~slIilpfhk~~~~ 584 (832)
T PLN03159 535 ENYEQHAGCVSVQPLTAISPYSTMHEDVCNLAEDKRVSLIIIPFHKQQTV 584 (832)
T ss_pred HHHHhhcCceEEEEEEEEeCcccHHHHHHHHHHhcCCCEEEECCCCccCC
Confidence 32222222233442 2222 46899999999999999999999976443
No 26
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=91.61 E-value=1.3 Score=35.15 Aligned_cols=88 Identities=9% Similarity=0.023 Sum_probs=54.5
Q ss_pred CCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHHHhhhcCCc
Q 030516 15 DSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVH 94 (176)
Q Consensus 15 ~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 94 (176)
.++...+|++.|+++..+. .+.+|+++++-++... ....++++.+.=.+.+.
T Consensus 34 iN~~D~~AlE~Alrlke~~----~g~~Vtvvs~Gp~~a~-----------------------~~~~lr~aLAmGaD~av- 85 (256)
T PRK03359 34 ISQYDLNAIEAACQLKQQA----AEAQVTALSVGGKALT-----------------------NAKGRKDVLSRGPDELI- 85 (256)
T ss_pred cChhhHHHHHHHHHHhhhc----CCCEEEEEEECCcchh-----------------------hHHHHHHHHHcCCCEEE-
Confidence 5677899999999999972 2379999998654321 01223332222111111
Q ss_pred ceEEEEEcC-C---hHHHHHHHHHhcCCcEEEEeccCCcc
Q 030516 95 DFVVEVVEG-D---ARNILCEAVEKHHASILVVGSHGYGA 130 (176)
Q Consensus 95 ~v~~~v~~G-~---~~~~I~~~a~~~~~DlIV~Gs~g~~~ 130 (176)
.++-.-..| | .+..|..++++.++|||+.|.+.-..
T Consensus 86 li~d~~~~g~D~~~tA~~La~ai~~~~~DLVl~G~~s~D~ 125 (256)
T PRK03359 86 VVIDDQFEQALPQQTASALAAAAQKAGFDLILCGDGSSDL 125 (256)
T ss_pred EEecCcccCcCHHHHHHHHHHHHHHhCCCEEEEcCccccC
Confidence 121111112 2 48889999999999999999887644
No 27
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=91.41 E-value=2.1 Score=34.11 Aligned_cols=102 Identities=16% Similarity=0.096 Sum_probs=60.7
Q ss_pred CEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHH
Q 030516 7 QTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKE 86 (176)
Q Consensus 7 ~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 86 (176)
.+|+|++++..+|..++..+..+... .++.++||-....... +...+..+.+.+
T Consensus 22 ~~ilVavSGGkDS~~ll~~L~~l~~~-------~~~~a~~Vd~~~~~~~-------------------~~~~~~~~~~~~ 75 (298)
T COG0037 22 YKILVAVSGGKDSLALLHLLKELGRR-------IEVEAVHVDHGLRGYS-------------------DQEAELVEKLCE 75 (298)
T ss_pred CeEEEEeCCChHHHHHHHHHHHhccC-------ceEEEEEecCCCCCcc-------------------chHHHHHHHHHH
Confidence 68999999999999999888776653 3888999854332210 112223333333
Q ss_pred HhhhcCCcceEEEEEcCC---------------hHHHHHHHHHhcCCcEEEEeccCCcccchhc
Q 030516 87 ICSSKSVHDFVVEVVEGD---------------ARNILCEAVEKHHASILVVGSHGYGAIKRYK 135 (176)
Q Consensus 87 ~~~~~~~~~v~~~v~~G~---------------~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l 135 (176)
.+.- +.....+....+. .-..+-+.|++.++|.|+.|.+......-++
T Consensus 76 ~~~~-~~~v~~~~~~~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~i~tgH~~dD~~et~l 138 (298)
T COG0037 76 KLGI-PLIVERVTDDLGRETLDGKSICAACRRLRRGLLYKIAKELGADKIATGHHLDDQAETFL 138 (298)
T ss_pred HhCC-ceEEEEEEeeccccccCCCChhHHHHHHHHHHHHHHHHHcCCCeEEeccCcHHHHHHHH
Confidence 2221 1111111111111 1245778899999999999998876654433
No 28
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=91.23 E-value=1.7 Score=34.45 Aligned_cols=86 Identities=12% Similarity=0.126 Sum_probs=53.4
Q ss_pred cCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHHHhhhcCC
Q 030516 14 DDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSV 93 (176)
Q Consensus 14 D~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 93 (176)
..++....|++.|++|..+. .+.+|+++++-++.. +..+.++.+.=.+...
T Consensus 34 ~in~~D~~AvEeAlrLke~~----~~~eV~vlt~Gp~~a-------------------------~~~lr~aLAmGaDrai 84 (260)
T COG2086 34 SINPFDLNAVEEALRLKEKG----YGGEVTVLTMGPPQA-------------------------EEALREALAMGADRAI 84 (260)
T ss_pred ccChhhHHHHHHHHHhhccC----CCceEEEEEecchhh-------------------------HHHHHHHHhcCCCeEE
Confidence 34567889999999999941 367999999855332 2233321111111111
Q ss_pred cceEEEEE-cC---ChHHHHHHHHHhcCCcEEEEeccCCc
Q 030516 94 HDFVVEVV-EG---DARNILCEAVEKHHASILVVGSHGYG 129 (176)
Q Consensus 94 ~~v~~~v~-~G---~~~~~I~~~a~~~~~DlIV~Gs~g~~ 129 (176)
+ ++-.-. .. ..+..|...+++.+.|||+.|...-.
T Consensus 85 l-i~d~~~~~~d~~~ta~~Laa~~~~~~~~LVl~G~qa~D 123 (260)
T COG2086 85 L-ITDRAFAGADPLATAKALAAAVKKIGPDLVLTGKQAID 123 (260)
T ss_pred E-EecccccCccHHHHHHHHHHHHHhcCCCEEEEeccccc
Confidence 1 111111 12 25888999999999999999988763
No 29
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=90.42 E-value=5.2 Score=28.92 Aligned_cols=89 Identities=16% Similarity=0.159 Sum_probs=55.1
Q ss_pred EEEEEecC-----CHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHH
Q 030516 8 TMVVGIDD-----SEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVE 82 (176)
Q Consensus 8 ~ILVavD~-----s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (176)
+|||-.+- ++.+..++..|.+++... |.+++++.+-+.+. ..+
T Consensus 1 ~ilv~~e~~~~~l~~~~~e~l~~A~~La~~~-----g~~v~av~~G~~~~---------------------------~~~ 48 (164)
T PF01012_consen 1 NILVFAEHRDGRLNPVSLEALEAARRLAEAL-----GGEVTAVVLGPAEE---------------------------AAE 48 (164)
T ss_dssp EEEEEE-EETCEE-HHHHHHHHHHHHHHHCT-----TSEEEEEEEETCCC---------------------------HHH
T ss_pred CEEEEEECCCCccCHHHHHHHHHHHHHHhhc-----CCeEEEEEEecchh---------------------------hHH
Confidence 45666653 478899999999999983 67999997752122 112
Q ss_pred HHHHHhhhcCCcceEEEEEcC--------ChHHHHHHHHHhcCCcEEEEeccCCc
Q 030516 83 EAKEICSSKSVHDFVVEVVEG--------DARNILCEAVEKHHASILVVGSHGYG 129 (176)
Q Consensus 83 ~~~~~~~~~~~~~v~~~v~~G--------~~~~~I~~~a~~~~~DlIV~Gs~g~~ 129 (176)
.++..+..+|.. --+.+... ...+.|.+.+++.++|+|++|+...+
T Consensus 49 ~l~~~l~~~G~d-~v~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~lVl~~~t~~g 102 (164)
T PF01012_consen 49 ALRKALAKYGAD-KVYHIDDPALAEYDPEAYADALAELIKEEGPDLVLFGSTSFG 102 (164)
T ss_dssp HHHHHHHSTTES-EEEEEE-GGGTTC-HHHHHHHHHHHHHHHT-SEEEEESSHHH
T ss_pred HHhhhhhhcCCc-EEEEecCccccccCHHHHHHHHHHHHHhcCCCEEEEcCcCCC
Confidence 223334444432 22222221 14678999999999999999976653
No 30
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=90.16 E-value=4.4 Score=29.35 Aligned_cols=92 Identities=11% Similarity=0.032 Sum_probs=57.1
Q ss_pred CCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHHHhhhcCCc
Q 030516 15 DSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVH 94 (176)
Q Consensus 15 ~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 94 (176)
+.-....||..| .+ .+.+|..++++++.... .. ........-..+.+..+.+.+.+.+
T Consensus 9 LRl~DN~aL~~A----~~-----~~~~v~~vfv~d~~~~~-~~----------~~~~~r~~Fl~~sL~~L~~~L~~~g-- 66 (165)
T PF00875_consen 9 LRLHDNPALHAA----AQ-----NGDPVLPVFVFDPEEFH-PY----------RIGPRRRRFLLESLADLQESLRKLG-- 66 (165)
T ss_dssp -SSTT-HHHHHH----HH-----TTSEEEEEEEE-HHGGT-TC----------SSCHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred CchhhhHHHHHH----HH-----cCCCeEEEEEecccccc-cc----------cCcchHHHHHHHHHHHHHHHHHhcC--
Confidence 333445566655 22 14589999998766211 00 0123344556667777777777766
Q ss_pred ceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCc
Q 030516 95 DFVVEVVEGDARNILCEAVEKHHASILVVGSHGYG 129 (176)
Q Consensus 95 ~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~ 129 (176)
....+..|++.+.+.+.+++.+++.|+.......
T Consensus 67 -~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~ 100 (165)
T PF00875_consen 67 -IPLLVLRGDPEEVLPELAKEYGATAVYFNEEYTP 100 (165)
T ss_dssp -S-EEEEESSHHHHHHHHHHHHTESEEEEE---SH
T ss_pred -cceEEEecchHHHHHHHHHhcCcCeeEeccccCH
Confidence 3477889999999999999999999998766543
No 31
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=89.30 E-value=6.8 Score=28.57 Aligned_cols=39 Identities=13% Similarity=0.064 Sum_probs=29.8
Q ss_pred EEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEec
Q 030516 8 TMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (176)
Q Consensus 8 ~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~ 49 (176)
+|+|++++..+|..++..+.++.... ..+.+++++|+-.
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~---~~~~~~~~~~~d~ 39 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRY---PYGFELEALTVDE 39 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhc---CCCeEEEEEEEEC
Confidence 58999999999999998887776541 1145888888853
No 32
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=88.96 E-value=1.7 Score=32.49 Aligned_cols=113 Identities=11% Similarity=0.123 Sum_probs=64.1
Q ss_pred CCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHH-
Q 030516 6 TQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEA- 84 (176)
Q Consensus 6 ~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 84 (176)
+++|++++-+|..+.++.++...|.+. +.+|.++-. +. +++++...
T Consensus 1 ~k~Ill~vtGsiaa~~~~~li~~L~~~------g~~V~vv~T---~~------------------------A~~fi~~~~ 47 (182)
T PRK07313 1 MKNILLAVSGSIAAYKAADLTSQLTKR------GYQVTVLMT---KA------------------------ATKFITPLT 47 (182)
T ss_pred CCEEEEEEeChHHHHHHHHHHHHHHHC------CCEEEEEEC---hh------------------------HHHHcCHHH
Confidence 479999999999999999999888765 667766532 11 11111110
Q ss_pred HHHhhhcCCcceEEEEEcCC---hHHHHHHHHHhcCCcEEEEeccCCcccchhcccccchh-h-hheee--ccccccccc
Q 030516 85 KEICSSKSVHDFVVEVVEGD---ARNILCEAVEKHHASILVVGSHGYGAIKRYKSTISCFI-W-YLIFS--RVELGMVNC 157 (176)
Q Consensus 85 ~~~~~~~~~~~v~~~v~~G~---~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~gvs~~~-~-~~~~~--~~~~~~~~~ 157 (176)
.+.+...+ +........ .... ++.++ .+|++|+.--....+.++=.|.++-. . ..+.. +.||.++++
T Consensus 48 l~~l~~~~---v~~~~~~~~~~~~~~h-i~l~~--~aD~~vIaPaTantlakiA~GiaDnllt~~~~a~~~~~pvvi~Pa 121 (182)
T PRK07313 48 LQVLSKNP---VHLDVMDEHDPKLMNH-IELAK--RADLFLVAPATANTIAKLAHGIADDLVTSVALALPATTPKLIAPA 121 (182)
T ss_pred HHHHhCCc---eEeccccccccCCccc-ccccc--ccCEEEEeeCCHhHHHHHHccccCcHHHHHHHHcCCCCCEEEEEC
Confidence 11221211 222211111 1111 13334 88999999888888888877765422 1 11223 678887765
No 33
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=87.88 E-value=3.8 Score=34.60 Aligned_cols=119 Identities=13% Similarity=0.102 Sum_probs=70.0
Q ss_pred CCCCCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHH
Q 030516 2 ATAETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVV 81 (176)
Q Consensus 2 ~~~~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (176)
.+...++|++++-+|..+.++.++...|-+. |++|.++-. +. +++++
T Consensus 2 ~~l~~k~IllgvTGsiaa~k~~~lv~~L~~~------g~~V~vv~T---~~------------------------A~~fi 48 (399)
T PRK05579 2 RMLAGKRIVLGVSGGIAAYKALELVRRLRKA------GADVRVVMT---EA------------------------AKKFV 48 (399)
T ss_pred CCCCCCeEEEEEeCHHHHHHHHHHHHHHHhC------CCEEEEEEC---Hh------------------------HHHHH
Confidence 3456789999999999999999999888665 677776632 11 11111
Q ss_pred HHH-HHHhhhcCCcceEEEEEc---CChHHHHHHHHHhcCCcEEEEeccCCcccchhcccccchh--hhheeeccccccc
Q 030516 82 EEA-KEICSSKSVHDFVVEVVE---GDARNILCEAVEKHHASILVVGSHGYGAIKRYKSTISCFI--WYLIFSRVELGMV 155 (176)
Q Consensus 82 ~~~-~~~~~~~~~~~v~~~v~~---G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~gvs~~~--~~~~~~~~~~~~~ 155 (176)
... .+.+...+ +-..... +...+ =++.++ .+|++|+.--....+.++-.|.++-. ...+..+.||+++
T Consensus 49 ~~~~l~~l~~~~---V~~~~~~~~~~~~~~-hi~l~~--~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~la~~~pvvi~ 122 (399)
T PRK05579 49 TPLTFQALSGNP---VSTDLWDPAAEAAMG-HIELAK--WADLVLIAPATADLIAKLAHGIADDLLTTTLLATTAPVLVA 122 (399)
T ss_pred hHHHHHHhhCCc---eEccccccccCCCcc-hhhccc--ccCEEEEeeCCHHHHHHHHcccCCcHHHHHHHhcCCCEEEE
Confidence 111 12222222 2111111 11111 124444 79999999999888888887766522 2233347888877
Q ss_pred cccC
Q 030516 156 NCFG 159 (176)
Q Consensus 156 ~~~~ 159 (176)
++--
T Consensus 123 Pamn 126 (399)
T PRK05579 123 PAMN 126 (399)
T ss_pred eCCC
Confidence 7443
No 34
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=86.72 E-value=9.5 Score=32.84 Aligned_cols=91 Identities=9% Similarity=0.019 Sum_probs=57.9
Q ss_pred cCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHHHhhhcCC
Q 030516 14 DDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSV 93 (176)
Q Consensus 14 D~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 93 (176)
|+.-....||..|++ . +.+|..+.+.++...... ........-..+-+..+.+.+.+.+.
T Consensus 10 DLRl~DN~AL~~A~~---~------~~~vl~vfi~dp~~~~~~-----------~~~~~r~~Fl~esL~~L~~~L~~~G~ 69 (471)
T TIGR03556 10 DLRLSDNIGLAAARQ---Q------SAKVVGLFCLDPNILQAD-----------DMAPARVAYLIGCLQELQQRYQQAGS 69 (471)
T ss_pred CCCcchHHHHHHHHh---c------CCCEEEEEEEchhhhccc-----------cCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence 444455667776653 2 337888888875432100 01112234455566666667766653
Q ss_pred cceEEEEEcCChHHHHHHHHHhcCCcEEEEeccC
Q 030516 94 HDFVVEVVEGDARNILCEAVEKHHASILVVGSHG 127 (176)
Q Consensus 94 ~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g 127 (176)
...+..|++.+.|.+.+++.+++.|+.-..-
T Consensus 70 ---~L~v~~G~p~~vl~~l~~~~~~~~V~~~~~~ 100 (471)
T TIGR03556 70 ---QLLILQGDPVQLIPQLAQQLGAKAVYWNLDV 100 (471)
T ss_pred ---CeEEEECCHHHHHHHHHHHcCCCEEEEeccc
Confidence 3566789999999999999999999976543
No 35
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=86.36 E-value=2.4 Score=31.60 Aligned_cols=118 Identities=12% Similarity=0.150 Sum_probs=65.3
Q ss_pred CEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHH-HH
Q 030516 7 QTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEE-AK 85 (176)
Q Consensus 7 ~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~ 85 (176)
++|++++-++..+.++.+....|-+. +.+|+++-. +.. ++++.. ..
T Consensus 1 k~I~lgvtGs~~a~~~~~ll~~L~~~------g~~V~vi~T---~~A------------------------~~fi~~~~l 47 (177)
T TIGR02113 1 KKILLAVTGSIAAYKAADLTSQLTKL------GYDVTVLMT---QAA------------------------TQFITPLTL 47 (177)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHHHHC------CCEEEEEEC---hHH------------------------HhhccHhhH
Confidence 58999999999999999887777654 667766532 111 111111 01
Q ss_pred HHhhhcCCcceEEEEEc-CC--hHHHHHHHHHhcCCcEEEEeccCCcccchhcccccchh---hhhee-ecccccccccc
Q 030516 86 EICSSKSVHDFVVEVVE-GD--ARNILCEAVEKHHASILVVGSHGYGAIKRYKSTISCFI---WYLIF-SRVELGMVNCF 158 (176)
Q Consensus 86 ~~~~~~~~~~v~~~v~~-G~--~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~gvs~~~---~~~~~-~~~~~~~~~~~ 158 (176)
+.+.... +...... .+ ....|-. ++ .+|++|+.--....+.++-.|.++-. ..+.+ .+.||+++++-
T Consensus 48 ~~l~~~~---v~~~~~~~~~~~~~~hi~l-~~--~aD~~vVaPaSanTlakiA~GiaDnLlt~~a~a~~~~~pv~i~PaM 121 (177)
T TIGR02113 48 QVLSKNP---VHLDVMDEHDPKVINHIEL-AK--KADLFLVAPASANTIAHLAHGFADNIVTSVALALPPETPKLIAPAM 121 (177)
T ss_pred HHHhCCC---eEeeccccccCCCccccee-ch--hhCEEEEEeCCHHHHHHHHcCcCCcHHHHHHHHcCCCCCEEEEeCC
Confidence 1222221 2222221 11 1111211 33 78999999999888888887765422 11122 26788877755
Q ss_pred Ccccc
Q 030516 159 GYYSY 163 (176)
Q Consensus 159 ~~~~~ 163 (176)
-..-|
T Consensus 122 n~~M~ 126 (177)
T TIGR02113 122 NTKMY 126 (177)
T ss_pred CHHHh
Confidence 44333
No 36
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=85.43 E-value=4.4 Score=30.77 Aligned_cols=123 Identities=7% Similarity=0.023 Sum_probs=68.3
Q ss_pred CCCCEEEEEecCCHhHHH-HHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHH
Q 030516 4 AETQTMVVGIDDSEQSTY-ALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVE 82 (176)
Q Consensus 4 ~~~~~ILVavD~s~~s~~-al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (176)
...++|++++-+|-.+-+ +.+.+-.|-+. |.+|+++-. +... .+.... -...+++.
T Consensus 3 l~~k~IllgVTGsiaa~k~a~~lir~L~k~------G~~V~vv~T---~aA~-------------~~~~~~-~~~~~~~~ 59 (196)
T PRK08305 3 LKGKRIGFGLTGSHCTYDEVMPEIEKLVDE------GAEVTPIVS---YTVQ-------------TTDTRF-GKAEEWIK 59 (196)
T ss_pred CCCCEEEEEEcCHHHHHHHHHHHHHHHHhC------cCEEEEEEC---HhHH-------------HHhhhc-CChHHHHH
Confidence 457899999999999999 68888888665 677776632 1110 000000 00111122
Q ss_pred HHHHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcccchhcccccchhhhhee-----eccccccccc
Q 030516 83 EAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKSTISCFIWYLIF-----SRVELGMVNC 157 (176)
Q Consensus 83 ~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~gvs~~~~~~~~-----~~~~~~~~~~ 157 (176)
.+.. +...+ +...+. +. .+++.+ ..+|++|+.--..+.+.++-.|.++-....+. .+.||.++++
T Consensus 60 ~l~~-ls~~~---v~~~~~-~~---~~isls--~~aD~mvIAPaSanTLAKiA~GiaDnll~~aa~a~lke~~PvvlaPA 129 (196)
T PRK08305 60 KIEE-ITGNK---VINTIV-EA---EPLGPK--KLLDCMVIAPCTGNTMAKLANAITDSPVLMAAKATLRNQRPVVLAIS 129 (196)
T ss_pred HHHH-HHCCC---cEEecC-CC---ccCccc--cccCEEEEEeCCHhHHHHHHccccCcHHHHHHHHHhcCCCCEEEEEC
Confidence 2222 22222 212111 11 122233 47899999999888888888777764433333 2577777665
Q ss_pred cC
Q 030516 158 FG 159 (176)
Q Consensus 158 ~~ 159 (176)
--
T Consensus 130 MN 131 (196)
T PRK08305 130 TN 131 (196)
T ss_pred CC
Confidence 43
No 37
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=84.61 E-value=15 Score=31.01 Aligned_cols=97 Identities=10% Similarity=0.017 Sum_probs=59.9
Q ss_pred cCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHHHhhhcCC
Q 030516 14 DDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSV 93 (176)
Q Consensus 14 D~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 93 (176)
|+.-....||..|++. +.+|..|.++++........+. ..........-..+.++.+.+.+.+.+.
T Consensus 10 DLRl~DN~aL~~A~~~---------~~~vl~vfi~dp~~~~~~~~~~-----~~~~~~~r~~Fl~esL~~L~~~L~~~g~ 75 (429)
T TIGR02765 10 DLRVHDNPALYKASSS---------SDTLIPLYCFDPRQFKLTHFFG-----FPKTGPARGKFLLESLKDLRTSLRKLGS 75 (429)
T ss_pred CCccccHHHHHHHHhc---------CCeEEEEEEECchHhccccccc-----cCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4444556677666532 2268888888764322100000 0001233345556667777777777653
Q ss_pred cceEEEEEcCChHHHHHHHHHhcCCcEEEEeccC
Q 030516 94 HDFVVEVVEGDARNILCEAVEKHHASILVVGSHG 127 (176)
Q Consensus 94 ~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g 127 (176)
...+..|++.+.|.+.+++.+++.|+.-...
T Consensus 76 ---~L~v~~G~~~~vl~~L~~~~~~~~V~~~~~~ 106 (429)
T TIGR02765 76 ---DLLVRSGKPEDVLPELIKELGVRTVFLHQEV 106 (429)
T ss_pred ---CeEEEeCCHHHHHHHHHHHhCCCEEEEeccC
Confidence 2456789999999999999999999988543
No 38
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=84.11 E-value=7.3 Score=35.77 Aligned_cols=108 Identities=15% Similarity=0.080 Sum_probs=61.7
Q ss_pred CCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHH
Q 030516 6 TQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAK 85 (176)
Q Consensus 6 ~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 85 (176)
..+|.+.+=+..+.+.|+..+.+++.+ ....+++++..++......... ........+.....+- +
T Consensus 614 ~~~v~~lF~GG~DDrEALa~~~rm~~~-----~~v~lTVirf~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~--~ 679 (769)
T KOG1650|consen 614 SYKVVVLFLGGKDDREALALAKRMAEN-----PRVTLTVIRFFPDESKYNRKVL-------VEVGKMLDQEGLEDFV--K 679 (769)
T ss_pred eeEEEEEecCChhhHHHHHHHHHHhhC-----CceEEEEEEeeccchhhccccc-------chhhhhhhhhHHHHHH--H
Confidence 346777777889999999999999998 4889999999876653211100 0111111111111110 1
Q ss_pred HHhhhcCCcce--EEEEEcCChHHHHHHHHHhcCCcEEEEeccCC
Q 030516 86 EICSSKSVHDF--VVEVVEGDARNILCEAVEKHHASILVVGSHGY 128 (176)
Q Consensus 86 ~~~~~~~~~~v--~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~ 128 (176)
...+....... +-.+..|...-.+++...+ ++|++++|+...
T Consensus 680 ~~~~~~~~i~~~~ek~v~~~~et~~~~~~~~~-~ydL~ivGr~~~ 723 (769)
T KOG1650|consen 680 STRESNLDIIYAEEKIVLNGAETTALLRSITE-DYDLFIVGRSHG 723 (769)
T ss_pred HhhhchhhhhhhhHHHHhcchhHHHHHHHhcc-ccceEEEecccc
Confidence 11111101111 2334456656666666665 999999998866
No 39
>PRK13820 argininosuccinate synthase; Provisional
Probab=82.01 E-value=30 Score=29.23 Aligned_cols=37 Identities=5% Similarity=0.210 Sum_probs=28.5
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCc-EEEEEEEec
Q 030516 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPF-KLVIVHARP 49 (176)
Q Consensus 5 ~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a-~v~lvhv~~ 49 (176)
++++|+|++++.-+|.-++.++.... +. +|+.+|+-.
T Consensus 1 ~~~kVvvA~SGGvDSsvll~lL~e~~--------g~~~Viav~vd~ 38 (394)
T PRK13820 1 MMKKVVLAYSGGLDTSVCVPLLKEKY--------GYDEVITVTVDV 38 (394)
T ss_pred CCCeEEEEEeCcHHHHHHHHHHHHhc--------CCCEEEEEEEEC
Confidence 35899999999999999988864321 33 789998853
No 40
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=80.74 E-value=26 Score=29.88 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=31.1
Q ss_pred CCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEe
Q 030516 6 TQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHAR 48 (176)
Q Consensus 6 ~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~ 48 (176)
..+|+|++++..+|...+.....+.... .+.+++++|+-
T Consensus 15 ~~~ilvavSGG~DS~~Ll~~l~~~~~~~----~~~~l~a~hvn 53 (436)
T PRK10660 15 SRQILVAFSGGLDSTVLLHLLVQWRTEN----PGVTLRAIHVH 53 (436)
T ss_pred CCeEEEEecCCHHHHHHHHHHHHHHHhc----CCCeEEEEEEe
Confidence 4789999999999999888887765221 25689999994
No 41
>PRK10674 deoxyribodipyrimidine photolyase; Provisional
Probab=80.73 E-value=25 Score=30.30 Aligned_cols=93 Identities=9% Similarity=0.034 Sum_probs=58.7
Q ss_pred cCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHHHhhhcCC
Q 030516 14 DDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSV 93 (176)
Q Consensus 14 D~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 93 (176)
|+.-....||..|++.+. .+|..|.+.++...... ........-..+.+..+.+.+.+.+.
T Consensus 11 DLRl~DN~aL~~A~~~~~--------~~vlpvyv~dp~~~~~~-----------~~~~~r~~Fl~esL~~L~~~L~~~g~ 71 (472)
T PRK10674 11 DLRLHDNLALAAACRDPS--------ARVLALFIATPAQWAAH-----------DMAPRQAAFINAQLNALQIALAEKGI 71 (472)
T ss_pred CCCcchHHHHHHHHhCCC--------CCEEEEEEECchhhccC-----------CCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 555566677777654332 26888888876432110 01123334556667777777777764
Q ss_pred cceEEEEE--cCChHHHHHHHHHhcCCcEEEEecc
Q 030516 94 HDFVVEVV--EGDARNILCEAVEKHHASILVVGSH 126 (176)
Q Consensus 94 ~~v~~~v~--~G~~~~~I~~~a~~~~~DlIV~Gs~ 126 (176)
+..+... .|++.+.+.+.+++.+++-|+.-..
T Consensus 72 -~L~v~~g~~~g~~~~vl~~l~~~~~i~~v~~~~~ 105 (472)
T PRK10674 72 -PLLFHEVDDFAASVEWLKQFCQQHQVTHLFYNYQ 105 (472)
T ss_pred -ceEEEecCCcCCHHHHHHHHHHHcCCCEEEEecc
Confidence 3433322 3689999999999999999988643
No 42
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=80.24 E-value=1.8 Score=29.26 Aligned_cols=46 Identities=15% Similarity=0.249 Sum_probs=29.3
Q ss_pred ChHHHHHHHHHhcCCcEEEEeccCCcccchhcccccchhhhheeeccccccccccCccc
Q 030516 104 DARNILCEAVEKHHASILVVGSHGYGAIKRYKSTISCFIWYLIFSRVELGMVNCFGYYS 162 (176)
Q Consensus 104 ~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~gvs~~~~~~~~~~~~~~~~~~~~~~~ 162 (176)
+-.+.|+++++++++|++|+|.-.. +..|+.+.... .. +++||++.
T Consensus 49 ~d~~~l~~~a~~~~idlvvvGPE~p-----L~~Gl~D~l~~-------~g-i~vfGP~k 94 (100)
T PF02844_consen 49 TDPEELADFAKENKIDLVVVGPEAP-----LVAGLADALRA-------AG-IPVFGPSK 94 (100)
T ss_dssp T-HHHHHHHHHHTTESEEEESSHHH-----HHTTHHHHHHH-------TT--CEES--H
T ss_pred CCHHHHHHHHHHcCCCEEEECChHH-----HHHHHHHHHHH-------CC-CcEECcCH
Confidence 3578899999999999999996543 33455554443 11 56677664
No 43
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=79.51 E-value=28 Score=27.24 Aligned_cols=35 Identities=9% Similarity=0.099 Sum_probs=27.1
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEe
Q 030516 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHAR 48 (176)
Q Consensus 5 ~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~ 48 (176)
.+++++|++++.-+|.-++..+.+. +.++..+|+.
T Consensus 11 ~~~~vlVa~SGGvDSs~ll~la~~~---------g~~v~av~~~ 45 (252)
T TIGR00268 11 EFKKVLIAYSGGVDSSLLAAVCSDA---------GTEVLAITVV 45 (252)
T ss_pred hcCCEEEEecCcHHHHHHHHHHHHh---------CCCEEEEEec
Confidence 3578999999999998888777553 2268888884
No 44
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=79.43 E-value=32 Score=27.91 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=31.0
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEec
Q 030516 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (176)
Q Consensus 5 ~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~ 49 (176)
.+.++++++.+..+|.-.+..+.+.+.. .+.++.++|+-.
T Consensus 26 ~f~~~vv~~SGGKDS~VLL~La~ka~~~-----~~~~~~vl~iDT 65 (301)
T PRK05253 26 EFENPVMLYSIGKDSSVMLHLARKAFYP-----GKLPFPLLHVDT 65 (301)
T ss_pred hCCCEEEEecCCHHHHHHHHHHHHhhcc-----cCCCeeEEEEeC
Confidence 3678999999999999999988776554 134778888843
No 45
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=77.89 E-value=16 Score=27.58 Aligned_cols=117 Identities=10% Similarity=0.089 Sum_probs=62.5
Q ss_pred CEEEEEecCCHhHHHHH-HHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHH
Q 030516 7 QTMVVGIDDSEQSTYAL-QWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAK 85 (176)
Q Consensus 7 ~~ILVavD~s~~s~~al-~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 85 (176)
++|++++-+|..+-++. +..-.|.+. |++|+++-. +... ...... ....+++..+.
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L~~~------g~~V~vI~S---~~A~-------------~~~~~~-g~~~~~i~~l~ 57 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKLVDE------GAEVTPIVS---ETVQ-------------TTDTRF-GKGADWIKKIE 57 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHHhC------cCEEEEEEc---hhHH-------------HHHHHc-CChHHHHHHHH
Confidence 58999999999999996 777777655 678776642 1110 000000 01122233222
Q ss_pred HHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcccchhcccccchhhhhee-----ecccccccc
Q 030516 86 EICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKSTISCFIWYLIF-----SRVELGMVN 156 (176)
Q Consensus 86 ~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~gvs~~~~~~~~-----~~~~~~~~~ 156 (176)
.. ...+. + ..+...++. .....+|++|+.--..+.+.++-.|.++-...++. .+.|+.++.
T Consensus 58 ~~-tg~~v--~-~~~~~~~~~------~~s~~~D~mVIaPcTanTLAKiA~GiaDnlv~~aa~a~Lke~rPlvlaP 123 (187)
T TIGR02852 58 EI-TGRPA--I-NTIVEAEPF------GPKVPLDCMVIAPLTGNSMSKLANAMTDSPVLMAAKATLRNNKPVVLAI 123 (187)
T ss_pred HH-HCCCC--E-EECCCCccc------CCchhhCEEEEEeCCHhHHHHHHccccCcHHHHHHHHHhcCCCCEEEEE
Confidence 22 22221 1 111112221 11357899999988888888888777764432222 245665544
No 46
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=77.32 E-value=28 Score=26.17 Aligned_cols=91 Identities=16% Similarity=0.145 Sum_probs=52.9
Q ss_pred EEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHHH
Q 030516 8 TMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEI 87 (176)
Q Consensus 8 ~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 87 (176)
-++|+-.++.....+...|.++..+ +.+|.++.. +... .. ..++++..
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~------~~~v~lis~-D~~R----------------------~g---a~eQL~~~ 51 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK------GKKVALISA-DTYR----------------------IG---AVEQLKTY 51 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT------T--EEEEEE-STSS----------------------TH---HHHHHHHH
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc------cccceeecC-CCCC----------------------cc---HHHHHHHH
Confidence 3567777888888888888888776 558888865 2221 11 22233333
Q ss_pred hhhcCCcceEEEEE--cCChHHHH---HHHHHhcCCcEEEEeccCCcccch
Q 030516 88 CSSKSVHDFVVEVV--EGDARNIL---CEAVEKHHASILVVGSHGYGAIKR 133 (176)
Q Consensus 88 ~~~~~~~~v~~~v~--~G~~~~~I---~~~a~~~~~DlIV~Gs~g~~~l~~ 133 (176)
++..+ +..... ..++.+.+ ++..++.++|+|++-+.|++....
T Consensus 52 a~~l~---vp~~~~~~~~~~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~ 99 (196)
T PF00448_consen 52 AEILG---VPFYVARTESDPAEIAREALEKFRKKGYDLVLIDTAGRSPRDE 99 (196)
T ss_dssp HHHHT---EEEEESSTTSCHHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHH
T ss_pred HHHhc---cccchhhcchhhHHHHHHHHHHHhhcCCCEEEEecCCcchhhH
Confidence 33333 222222 22455544 455566789999999999987643
No 47
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=76.72 E-value=28 Score=25.88 Aligned_cols=32 Identities=22% Similarity=0.268 Sum_probs=24.2
Q ss_pred EEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEe
Q 030516 9 MVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHAR 48 (176)
Q Consensus 9 ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~ 48 (176)
|+|++++..+|..++..+.+.... +++.+|+-
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~~~--------~v~~v~vd 32 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDALGD--------RVLAVTAT 32 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHhCC--------cEEEEEeC
Confidence 589999999999888777554321 67888874
No 48
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=76.30 E-value=11 Score=32.52 Aligned_cols=119 Identities=8% Similarity=0.036 Sum_probs=73.6
Q ss_pred CCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHH-
Q 030516 6 TQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEA- 84 (176)
Q Consensus 6 ~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 84 (176)
.++|++++-+|-.+.++.+.+..|.+. |++|.++-. +.. ++++...
T Consensus 70 ~k~IllgVtGsIAayka~~lvr~L~k~------G~~V~VvmT---~sA------------------------~~fv~p~~ 116 (475)
T PRK13982 70 SKRVTLIIGGGIAAYKALDLIRRLKER------GAHVRCVLT---KAA------------------------QQFVTPLT 116 (475)
T ss_pred CCEEEEEEccHHHHHHHHHHHHHHHhC------cCEEEEEEC---cCH------------------------HHHhhHHH
Confidence 589999999999999999999888776 678776642 211 1111111
Q ss_pred HHHhhhcCCcceEEEEEcCC---hHHHHHHHHHhcCCcEEEEeccCCcccchhcccccch--hhhheeeccccccccccC
Q 030516 85 KEICSSKSVHDFVVEVVEGD---ARNILCEAVEKHHASILVVGSHGYGAIKRYKSTISCF--IWYLIFSRVELGMVNCFG 159 (176)
Q Consensus 85 ~~~~~~~~~~~v~~~v~~G~---~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~gvs~~--~~~~~~~~~~~~~~~~~~ 159 (176)
.+.+...+ +-....... .... ++.++ .+|++|+.--....+.++-.|.++- ...++-.+.||++++..-
T Consensus 117 ~~~ls~~~---V~~d~~~~~~~~~~~H-i~la~--~aD~~vVAPATANTIAKiA~GiADnLlt~v~La~~~PvliaPaMN 190 (475)
T PRK13982 117 ASALSGQR---VYTDLFDPESEFDAGH-IRLAR--DCDLIVVAPATADLMAKMANGLADDLASAILLAANRPILLAPAMN 190 (475)
T ss_pred HHHhcCCc---eEecCCCcccccCccc-hhhhh--hcCEEEEeeCCHHHHHHHHccccCcHHHHHHHhcCCCEEEEEcCC
Confidence 12222222 222221111 1111 34455 6999999999998888888776652 233344688999888777
Q ss_pred cccc
Q 030516 160 YYSY 163 (176)
Q Consensus 160 ~~~~ 163 (176)
+.-|
T Consensus 191 ~~M~ 194 (475)
T PRK13982 191 PLMW 194 (475)
T ss_pred HHHh
Confidence 6644
No 49
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=75.26 E-value=39 Score=29.23 Aligned_cols=90 Identities=13% Similarity=0.070 Sum_probs=58.7
Q ss_pred cCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHHHhhhcCC
Q 030516 14 DDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSV 93 (176)
Q Consensus 14 D~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 93 (176)
|+.-....||.+|.+.... -+.++.+.++.... ..-.....-..+.+..+.+.+.+.+
T Consensus 11 DLR~~DN~aL~~A~~~~~~--------~~~~vfi~~~~~~~-------------~~~~~~~~Fl~~sL~~L~~~L~~~g- 68 (461)
T COG0415 11 DLRLTDNAALAAACQSGQP--------VIIAVFILDPEQLG-------------HASPRHAAFLLQSLQALQQSLAELG- 68 (461)
T ss_pred ccccCChHHHHHHHhcCCC--------ceEEEEEechhhcc-------------ccCHHHHHHHHHHHHHHHHHHHHcC-
Confidence 5555666778887766665 23555565544321 0112233444556666667776665
Q ss_pred cceEEEEEcCChHHHHHHHHHhcCCcEEEEeccC
Q 030516 94 HDFVVEVVEGDARNILCEAVEKHHASILVVGSHG 127 (176)
Q Consensus 94 ~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g 127 (176)
+...+..|++.+.+.+++++.+++.|+-...-
T Consensus 69 --i~L~v~~~~~~~~l~~~~~~~~~~~v~~n~~~ 100 (461)
T COG0415 69 --IPLLVREGDPEQVLPELAKQLAATTVFWNRDY 100 (461)
T ss_pred --CceEEEeCCHHHHHHHHHHHhCcceEEeeeee
Confidence 34778899999999999999998888776555
No 50
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=74.62 E-value=48 Score=27.44 Aligned_cols=96 Identities=10% Similarity=0.101 Sum_probs=59.9
Q ss_pred EEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHHH
Q 030516 8 TMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEI 87 (176)
Q Consensus 8 ~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 87 (176)
-++|+|+++......-..|..+-.. |-+|.+.-. ++ ++ .-..+++..|
T Consensus 142 il~vGVNG~GKTTTIaKLA~~l~~~------g~~VllaA~-DT------------------FR-------AaAiEQL~~w 189 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLAKYLKQQ------GKSVLLAAG-DT------------------FR-------AAAIEQLEVW 189 (340)
T ss_pred EEEEecCCCchHhHHHHHHHHHHHC------CCeEEEEec-ch------------------HH-------HHHHHHHHHH
Confidence 4678888888877777777666655 557666533 10 11 1234445556
Q ss_pred hhhcCCcceEEEEEcCChHHHH---HHHHHhcCCcEEEEeccCCcccchhcc
Q 030516 88 CSSKSVHDFVVEVVEGDARNIL---CEAVEKHHASILVVGSHGYGAIKRYKS 136 (176)
Q Consensus 88 ~~~~~~~~v~~~v~~G~~~~~I---~~~a~~~~~DlIV~Gs~g~~~l~~~l~ 136 (176)
.++.+. ++...-..+||+..+ +++|+..++|+|++-|.||-.-+.-|+
T Consensus 190 ~er~gv-~vI~~~~G~DpAaVafDAi~~Akar~~DvvliDTAGRLhnk~nLM 240 (340)
T COG0552 190 GERLGV-PVISGKEGADPAAVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLM 240 (340)
T ss_pred HHHhCC-eEEccCCCCCcHHHHHHHHHHHHHcCCCEEEEeCcccccCchhHH
Confidence 666664 343322345576554 567888999999999999965554443
No 51
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=74.42 E-value=30 Score=24.97 Aligned_cols=88 Identities=14% Similarity=0.091 Sum_probs=50.1
Q ss_pred EEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHHH
Q 030516 8 TMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEI 87 (176)
Q Consensus 8 ~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 87 (176)
+++|++.+..+|..++..+.+ . +.+++.+|+...... ....+. ++...+.
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~---~------~~~v~~~~~~~~~~~-----------------~~~~~~----~~~~~~~ 50 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKK---E------GYEVHALSFDYGQRH-----------------AKEEEA----AKLIAEK 50 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHH---c------CCcEEEEEEECCCCC-----------------hhHHHH----HHHHHHH
Confidence 588999999999988877654 2 336888888532110 000111 2222222
Q ss_pred hhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCc
Q 030516 88 CSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYG 129 (176)
Q Consensus 88 ~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~ 129 (176)
+. + . .............+.+.|++++++.|+.|.+...
T Consensus 51 ~g--~-~-~~~~~~~~~~~~~l~~~a~~~g~~~i~~G~~~~d 88 (169)
T cd01995 51 LG--P-S-TYVPARNLIFLSIAAAYAEALGAEAIIIGVNAED 88 (169)
T ss_pred HC--C-C-EEEeCcCHHHHHHHHHHHHHCCCCEEEEeeccCc
Confidence 21 2 1 1111111113356778889999999999988854
No 52
>PRK00919 GMP synthase subunit B; Validated
Probab=74.14 E-value=34 Score=27.84 Aligned_cols=35 Identities=11% Similarity=0.091 Sum_probs=27.2
Q ss_pred CEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEec
Q 030516 7 QTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (176)
Q Consensus 7 ~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~ 49 (176)
++++|++.+.-+|.-++.++.+. . |.+++.+|+-.
T Consensus 22 ~kVlVa~SGGVDSsvla~la~~~-l-------G~~v~aV~vD~ 56 (307)
T PRK00919 22 GKAIIALSGGVDSSVAAVLAHRA-I-------GDRLTPVFVDT 56 (307)
T ss_pred CCEEEEecCCHHHHHHHHHHHHH-h-------CCeEEEEEEEC
Confidence 78999999999998888776552 1 34899998854
No 53
>PLN00200 argininosuccinate synthase; Provisional
Probab=73.19 E-value=57 Score=27.69 Aligned_cols=38 Identities=13% Similarity=0.255 Sum_probs=29.6
Q ss_pred CCCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEec
Q 030516 4 AETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (176)
Q Consensus 4 ~~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~ 49 (176)
.|.++|+|++++.-+|.-++.++.+. . |.+|+.+|+-.
T Consensus 3 ~~~~kVvva~SGGlDSsvla~~L~e~--~------G~eViav~id~ 40 (404)
T PLN00200 3 GKLNKVVLAYSGGLDTSVILKWLREN--Y------GCEVVCFTADV 40 (404)
T ss_pred CCCCeEEEEEeCCHHHHHHHHHHHHh--h------CCeEEEEEEEC
Confidence 45689999999999999988888552 1 34888888853
No 54
>PRK10867 signal recognition particle protein; Provisional
Probab=71.71 E-value=43 Score=28.67 Aligned_cols=94 Identities=17% Similarity=0.133 Sum_probs=53.0
Q ss_pred EEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHHHh
Q 030516 9 MVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEIC 88 (176)
Q Consensus 9 ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 88 (176)
++++..++..+..+...|..+..+. |-++.++..-. .. .. ..++++.+.
T Consensus 104 ~~vG~~GsGKTTtaakLA~~l~~~~-----G~kV~lV~~D~-~R----------------------~a---a~eQL~~~a 152 (433)
T PRK10867 104 MMVGLQGAGKTTTAGKLAKYLKKKK-----KKKVLLVAADV-YR----------------------PA---AIEQLKTLG 152 (433)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHhc-----CCcEEEEEccc-cc----------------------hH---HHHHHHHHH
Confidence 4566667778888888888777651 44777775421 11 00 112222333
Q ss_pred hhcCCcceEEEEEcCChHH---HHHHHHHhcCCcEEEEeccCCcccchh
Q 030516 89 SSKSVHDFVVEVVEGDARN---ILCEAVEKHHASILVVGSHGYGAIKRY 134 (176)
Q Consensus 89 ~~~~~~~v~~~v~~G~~~~---~I~~~a~~~~~DlIV~Gs~g~~~l~~~ 134 (176)
...+. ++...-...+|.+ ..++.++..++|+|++-+.|+......
T Consensus 153 ~~~gv-~v~~~~~~~dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d~~ 200 (433)
T PRK10867 153 EQIGV-PVFPSGDGQDPVDIAKAALEEAKENGYDVVIVDTAGRLHIDEE 200 (433)
T ss_pred hhcCC-eEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcccCHH
Confidence 33332 2222112234433 344567778899999999998765443
No 55
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=71.57 E-value=28 Score=29.36 Aligned_cols=115 Identities=9% Similarity=0.126 Sum_probs=64.9
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHH
Q 030516 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEA 84 (176)
Q Consensus 5 ~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (176)
..++|++++-+|..+.++++.+..|.+. +++|.++-. +. +++++...
T Consensus 2 ~~k~IllgiTGSiaa~~~~~ll~~L~~~------g~~V~vv~T---~~------------------------A~~fv~~~ 48 (390)
T TIGR00521 2 ENKKILLGVTGGIAAYKTVELVRELVRQ------GAEVKVIMT---EA------------------------AKKFITPL 48 (390)
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHHHhC------CCEEEEEEC---Hh------------------------HHHHHHHH
Confidence 3579999999999999999999888655 667776632 11 11222211
Q ss_pred -HHHhhhcCCcceEEEEEc-CChHHHHHHHHHhcCCcEEEEeccCCcccchhcccccchh--hhheeeccccccccc
Q 030516 85 -KEICSSKSVHDFVVEVVE-GDARNILCEAVEKHHASILVVGSHGYGAIKRYKSTISCFI--WYLIFSRVELGMVNC 157 (176)
Q Consensus 85 -~~~~~~~~~~~v~~~v~~-G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~gvs~~~--~~~~~~~~~~~~~~~ 157 (176)
.+.+...+ +...... .+....=++.++ .+|++|+.--....+.++-.|.++-. .....+..|+.+++.
T Consensus 49 ~l~~~~~~~---v~~~~~~~~~~~~~hi~l~~--~aD~~vVaPaTanTlaKiA~GiaDnLlt~~~~~~~~plviaPa 120 (390)
T TIGR00521 49 TLEALSGHK---VVTELWGPIEHNALHIDLAK--WADLILIAPATANTISKIAHGIADDLVSTTALAASAPIILAPA 120 (390)
T ss_pred HHHHhhCCc---eeehhccccccccchhhccc--ccCEEEEecCCHHHHHHHHcccCCcHHHHHHHHhCCCEEEEeC
Confidence 11221222 2111111 111100123333 88999999988888888887766522 112223378877776
No 56
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=70.69 E-value=54 Score=28.05 Aligned_cols=94 Identities=15% Similarity=0.100 Sum_probs=52.7
Q ss_pred EEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHHH
Q 030516 8 TMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEI 87 (176)
Q Consensus 8 ~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 87 (176)
.++++.-++..+..+...|..+..+. |.++.++..-. .. ..+ .+++..+
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l~~~~-----g~kV~lV~~D~-~R----------------------~~a---~~QL~~~ 150 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYLKKKQ-----GKKVLLVACDL-YR----------------------PAA---IEQLKVL 150 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhC-----CCeEEEEeccc-cc----------------------hHH---HHHHHHH
Confidence 45666677788888888888876431 55787775421 10 001 1122233
Q ss_pred hhhcCCcceEEEEEcCChHH---HHHHHHHhcCCcEEEEeccCCcccch
Q 030516 88 CSSKSVHDFVVEVVEGDARN---ILCEAVEKHHASILVVGSHGYGAIKR 133 (176)
Q Consensus 88 ~~~~~~~~v~~~v~~G~~~~---~I~~~a~~~~~DlIV~Gs~g~~~l~~ 133 (176)
....+. ++.......+|.+ ..++.++..++|+|++-+.|+.....
T Consensus 151 a~~~gv-p~~~~~~~~~P~~i~~~al~~~~~~~~DvVIIDTaGr~~~d~ 198 (428)
T TIGR00959 151 GQQVGV-PVFALGKGQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDE 198 (428)
T ss_pred HHhcCC-ceEecCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccccCH
Confidence 333332 2222111233533 34556677899999999999876543
No 57
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=70.67 E-value=38 Score=24.64 Aligned_cols=34 Identities=9% Similarity=0.048 Sum_probs=26.9
Q ss_pred EEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecC
Q 030516 8 TMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPS 50 (176)
Q Consensus 8 ~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~ 50 (176)
+++|++.+.-+|..++.++.+ + |.+++.+|+-..
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~---~------g~~v~av~~d~g 34 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMK---R------GIEVDALHFNSG 34 (177)
T ss_pred CEEEEecCChhHHHHHHHHHH---c------CCeEEEEEEeCC
Confidence 589999999999988888765 2 458899988543
No 58
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.14 E-value=38 Score=29.61 Aligned_cols=103 Identities=12% Similarity=0.069 Sum_probs=64.3
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHH
Q 030516 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEA 84 (176)
Q Consensus 5 ~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (176)
+|--.+|+|++-..|.....-|.+|.+. +.+|.+.-- ++ +.....++.+-+.+++
T Consensus 378 PYVi~fvGVNGVGKSTNLAKIayWLlqN------kfrVLIAAC-DT------------------FRsGAvEQLrtHv~rl 432 (587)
T KOG0781|consen 378 PYVISFVGVNGVGKSTNLAKIAYWLLQN------KFRVLIAAC-DT------------------FRSGAVEQLRTHVERL 432 (587)
T ss_pred CeEEEEEeecCccccchHHHHHHHHHhC------CceEEEEec-cc------------------hhhhHHHHHHHHHHHH
Confidence 3455788888888888888888888887 345554432 11 2233445555555555
Q ss_pred HHHhhhcCCcceE-EEEEcC----ChHHHHHHHHHhcCCcEEEEeccCCcccchhcc
Q 030516 85 KEICSSKSVHDFV-VEVVEG----DARNILCEAVEKHHASILVVGSHGYGAIKRYKS 136 (176)
Q Consensus 85 ~~~~~~~~~~~v~-~~v~~G----~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~ 136 (176)
.++-... ++ .+-..| ..+..-+++|++++.|+|.|.+.||-.-..-++
T Consensus 433 ~~l~~~~----v~lfekGYgkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm 485 (587)
T KOG0781|consen 433 SALHGTM----VELFEKGYGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLM 485 (587)
T ss_pred HHhccch----hHHHhhhcCCChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHH
Confidence 4332211 11 111111 257788899999999999999999865554443
No 59
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=68.95 E-value=57 Score=27.95 Aligned_cols=94 Identities=19% Similarity=0.161 Sum_probs=53.1
Q ss_pred EEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHHHh
Q 030516 9 MVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEIC 88 (176)
Q Consensus 9 ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 88 (176)
.+++..++..+..+...|..+..+ |.+|.++.. ++.. .. ..++++.+.
T Consensus 104 ~lvG~~GvGKTTtaaKLA~~l~~~------G~kV~lV~~-D~~R----------------------~a---A~eQLk~~a 151 (429)
T TIGR01425 104 MFVGLQGSGKTTTCTKLAYYYQRK------GFKPCLVCA-DTFR----------------------AG---AFDQLKQNA 151 (429)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHC------CCCEEEEcC-cccc----------------------hh---HHHHHHHHh
Confidence 456667777777888888776654 557777743 1110 11 112222333
Q ss_pred hhcCCcceEEEEEcCChHH---HHHHHHHhcCCcEEEEeccCCcccchhc
Q 030516 89 SSKSVHDFVVEVVEGDARN---ILCEAVEKHHASILVVGSHGYGAIKRYK 135 (176)
Q Consensus 89 ~~~~~~~v~~~v~~G~~~~---~I~~~a~~~~~DlIV~Gs~g~~~l~~~l 135 (176)
...+ .++.......+|.. .-++.+++.++|+|++-|.|+.....-+
T Consensus 152 ~~~~-vp~~~~~~~~dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~d~~l 200 (429)
T TIGR01425 152 TKAR-IPFYGSYTESDPVKIASEGVEKFKKENFDIIIVDTSGRHKQEDSL 200 (429)
T ss_pred hccC-CeEEeecCCCCHHHHHHHHHHHHHhCCCCEEEEECCCCCcchHHH
Confidence 3333 22332222345543 3455666679999999999997665433
No 60
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=68.08 E-value=63 Score=27.77 Aligned_cols=96 Identities=19% Similarity=0.175 Sum_probs=60.6
Q ss_pred EEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHHH
Q 030516 8 TMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEI 87 (176)
Q Consensus 8 ~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 87 (176)
-+||+.-+|.....+-..|..+-++ +-++.++.. +... -. ..++++..
T Consensus 103 ImmvGLQGsGKTTt~~KLA~~lkk~------~~kvllVaa-D~~R----------------------pA---A~eQL~~L 150 (451)
T COG0541 103 ILMVGLQGSGKTTTAGKLAKYLKKK------GKKVLLVAA-DTYR----------------------PA---AIEQLKQL 150 (451)
T ss_pred EEEEeccCCChHhHHHHHHHHHHHc------CCceEEEec-ccCC----------------------hH---HHHHHHHH
Confidence 4678888998888888888777775 557777654 2111 11 23334444
Q ss_pred hhhcCCcceEEEEEcCCh---HHHHHHHHHhcCCcEEEEeccCCcccchhcc
Q 030516 88 CSSKSVHDFVVEVVEGDA---RNILCEAVEKHHASILVVGSHGYGAIKRYKS 136 (176)
Q Consensus 88 ~~~~~~~~v~~~v~~G~~---~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~ 136 (176)
..+.+. ++-.....-+| +..-+++++++++|+|++-|.||-.+.+-++
T Consensus 151 a~q~~v-~~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm 201 (451)
T COG0541 151 AEQVGV-PFFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELM 201 (451)
T ss_pred HHHcCC-ceecCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHH
Confidence 444442 22222112234 4677889999999999999999988776654
No 61
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=67.86 E-value=26 Score=26.73 Aligned_cols=48 Identities=19% Similarity=0.130 Sum_probs=36.1
Q ss_pred HHHHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcccch
Q 030516 83 EAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKR 133 (176)
Q Consensus 83 ~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~ 133 (176)
++.+.+.+.+. .+-..+..|.+.+.|..++. ..|++.+-|-..|.-.+
T Consensus 103 ~lv~~ir~~Gm-k~G~alkPgT~Ve~~~~~~~--~~D~vLvMtVePGFGGQ 150 (224)
T KOG3111|consen 103 ELVEKIREKGM-KVGLALKPGTPVEDLEPLAE--HVDMVLVMTVEPGFGGQ 150 (224)
T ss_pred HHHHHHHHcCC-eeeEEeCCCCcHHHHHHhhc--cccEEEEEEecCCCchh
Confidence 34455556663 57788899999999999999 88998888877664433
No 62
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=63.52 E-value=75 Score=25.35 Aligned_cols=94 Identities=14% Similarity=0.175 Sum_probs=49.6
Q ss_pred CCCCCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHH
Q 030516 2 ATAETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVV 81 (176)
Q Consensus 2 ~~~~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (176)
.++..+++||-= ..+--..+.|..+|++ |.+|+++ .+.++.|
T Consensus 2 ~~~~~~~~lITG---ASsGIG~~~A~~lA~~------g~~liLv-----------------------------aR~~~kL 43 (265)
T COG0300 2 GPMKGKTALITG---ASSGIGAELAKQLARR------GYNLILV-----------------------------ARREDKL 43 (265)
T ss_pred CCCCCcEEEEEC---CCchHHHHHHHHHHHC------CCEEEEE-----------------------------eCcHHHH
Confidence 445566666642 2233445667788888 6788887 2223455
Q ss_pred HHHHHHhhhcCCcceEEEEEc---CChHHHHHHHHHhc--CCcEEEEeccCCcccchh
Q 030516 82 EEAKEICSSKSVHDFVVEVVE---GDARNILCEAVEKH--HASILVVGSHGYGAIKRY 134 (176)
Q Consensus 82 ~~~~~~~~~~~~~~v~~~v~~---G~~~~~I~~~a~~~--~~DlIV~Gs~g~~~l~~~ 134 (176)
+++++.+++.-..++++.... -+..+.+.+..+.. .+|++|= +.|.+....+
T Consensus 44 ~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~~~IdvLVN-NAG~g~~g~f 100 (265)
T COG0300 44 EALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERGGPIDVLVN-NAGFGTFGPF 100 (265)
T ss_pred HHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcCCcccEEEE-CCCcCCccch
Confidence 555555544322234443333 22445555555555 7887763 4444444433
No 63
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=62.75 E-value=90 Score=26.01 Aligned_cols=34 Identities=15% Similarity=0.097 Sum_probs=27.2
Q ss_pred CCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEe
Q 030516 6 TQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHAR 48 (176)
Q Consensus 6 ~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~ 48 (176)
-.++++++.+.-+|.-++-++.+ + |.+++.+|.-
T Consensus 172 ~~kvlvllSGGiDS~vaa~ll~k---r------G~~V~av~~~ 205 (371)
T TIGR00342 172 QGKVLALLSGGIDSPVAAFMMMK---R------GCRVVAVHFF 205 (371)
T ss_pred CCeEEEEecCCchHHHHHHHHHH---c------CCeEEEEEEe
Confidence 47899999999999888766633 3 5689999985
No 64
>COG3360 Uncharacterized conserved protein [Function unknown]
Probab=61.94 E-value=26 Score=21.83 Aligned_cols=46 Identities=7% Similarity=-0.073 Sum_probs=31.7
Q ss_pred CCCCCCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCC
Q 030516 1 MATAETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSP 51 (176)
Q Consensus 1 m~~~~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~ 51 (176)
|+++.||+|.+.=...+....|++-|+..|... -. .|..+-|++..
T Consensus 1 m~~hvYK~IelvGtSp~S~d~Ai~~Ai~RA~~t---~~--~l~wfeV~~~r 46 (71)
T COG3360 1 MSHHVYKKIELVGTSPTSIDAAIANAIARAADT---LD--NLDWFEVVETR 46 (71)
T ss_pred CCcceEEEEEEEecCCccHHHHHHHHHHHHHhh---hh--cceEEEEEeec
Confidence 888899999876544455578888888877773 12 56666666544
No 65
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=61.69 E-value=12 Score=26.43 Aligned_cols=54 Identities=17% Similarity=0.087 Sum_probs=34.9
Q ss_pred CChHHHHHHHHHhcCCcEEEEeccCC--cccchhcccccchhhhheee--cccccccc
Q 030516 103 GDARNILCEAVEKHHASILVVGSHGY--GAIKRYKSTISCFIWYLIFS--RVELGMVN 156 (176)
Q Consensus 103 G~~~~~I~~~a~~~~~DlIV~Gs~g~--~~l~~~l~gvs~~~~~~~~~--~~~~~~~~ 156 (176)
+...+.|.+.+++++++.||+|-.-. |.....-.-+.+|+..+.-. .+||.+++
T Consensus 37 ~~~~~~l~~li~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~ipV~~~D 94 (135)
T PF03652_consen 37 EKDIEELKKLIEEYQIDGIVVGLPLNMDGSESEQARRVRKFAEELKKRFPGIPVILVD 94 (135)
T ss_dssp CCCHHHHHHHHHHCCECEEEEEEEBBCTSSC-CCHHHHHHHHHHHHHHH-TSEEEEEE
T ss_pred chHHHHHHHHHHHhCCCEEEEeCCcccCCCccHHHHHHHHHHHHHHHhcCCCcEEEEC
Confidence 45899999999999999999996533 22222212244555555443 67777654
No 66
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=61.05 E-value=76 Score=24.59 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=27.6
Q ss_pred EEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCC
Q 030516 8 TMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSP 51 (176)
Q Consensus 8 ~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~ 51 (176)
++++.+.+..+|..|+.+|.+. .. .+.+++..+..
T Consensus 2 k~~~l~SGGKDS~~al~~a~~~-~~--------v~~L~t~~~~~ 36 (223)
T TIGR00290 2 KVAALISGGKDSCLALYHALKE-HE--------VISLVNIMPEN 36 (223)
T ss_pred cEEEEecCcHHHHHHHHHHHHh-Ce--------eEEEEEEecCC
Confidence 4678899999999999999888 54 56677776653
No 67
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=60.71 E-value=51 Score=25.54 Aligned_cols=53 Identities=8% Similarity=0.013 Sum_probs=39.5
Q ss_pred HHHHHHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcccchhcc
Q 030516 81 VEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKS 136 (176)
Q Consensus 81 l~~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~ 136 (176)
..++.+.+.+.|. ..-..+-.+.|.+.|-.+.. .+|+|.+=|...|.-.+-|.
T Consensus 98 ~~r~i~~Ik~~G~-kaGv~lnP~Tp~~~i~~~l~--~vD~VllMsVnPGfgGQ~Fi 150 (220)
T COG0036 98 IHRTIQLIKELGV-KAGLVLNPATPLEALEPVLD--DVDLVLLMSVNPGFGGQKFI 150 (220)
T ss_pred HHHHHHHHHHcCC-eEEEEECCCCCHHHHHHHHh--hCCEEEEEeECCCCcccccC
Confidence 3444555656664 46677788999999999999 99999998888876655553
No 68
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=60.03 E-value=46 Score=21.81 Aligned_cols=78 Identities=13% Similarity=0.121 Sum_probs=47.6
Q ss_pred EEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHHHh
Q 030516 9 MVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEIC 88 (176)
Q Consensus 9 ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 88 (176)
|+|++.+..+|..++..+.++ . . ++.++|+-...... .+..++..++
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~--~-----~--~~~~~~~~~~~~~~-------------------~~~~~~~~~~----- 47 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKL--G-----Y--QVIAVTVDHGISPR-------------------LEDAKEIAKE----- 47 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHh--C-----C--CEEEEEEcCCCccc-------------------HHHHHHHHHH-----
Confidence 589999999998888777553 1 1 67888874332210 0111111111
Q ss_pred hhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcccchh
Q 030516 89 SSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRY 134 (176)
Q Consensus 89 ~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~ 134 (176)
..-+.+.+.+++.+++.|+.|.+........
T Consensus 48 ---------------~r~~~~~~~a~~~g~~~i~~g~~~~D~~~~~ 78 (103)
T cd01986 48 ---------------AREEAAKRIAKEKGAETIATGTRRDDVANRA 78 (103)
T ss_pred ---------------HHHHHHHHHHHHcCCCEEEEcCCcchHHHHH
Confidence 4456677778888888888887766544433
No 69
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=59.81 E-value=76 Score=24.20 Aligned_cols=86 Identities=15% Similarity=0.086 Sum_probs=51.5
Q ss_pred CEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHH
Q 030516 7 QTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKE 86 (176)
Q Consensus 7 ~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 86 (176)
.+|.|-++++.....|+-.|.. ... .++++.++-. +.+..+ ..+
T Consensus 1 ~ki~VlaSG~GSNlqaiida~~-~~~-----~~a~i~~Vis-d~~~A~-----------------------------~le 44 (200)
T COG0299 1 KKIAVLASGNGSNLQAIIDAIK-GGK-----LDAEIVAVIS-DKADAY-----------------------------ALE 44 (200)
T ss_pred CeEEEEEeCCcccHHHHHHHHh-cCC-----CCcEEEEEEe-CCCCCH-----------------------------HHH
Confidence 4788888888888888777766 222 2456666643 222211 123
Q ss_pred HhhhcCCcceEEEEEc-C---ChHHHHHHHHHhcCCcEEEEeccCC
Q 030516 87 ICSSKSVHDFVVEVVE-G---DARNILCEAVEKHHASILVVGSHGY 128 (176)
Q Consensus 87 ~~~~~~~~~v~~~v~~-G---~~~~~I~~~a~~~~~DlIV~Gs~g~ 128 (176)
++.+++...+...... . .-.++|.+..++.++|+||+.---+
T Consensus 45 rA~~~gIpt~~~~~k~~~~r~~~d~~l~~~l~~~~~dlvvLAGyMr 90 (200)
T COG0299 45 RAAKAGIPTVVLDRKEFPSREAFDRALVEALDEYGPDLVVLAGYMR 90 (200)
T ss_pred HHHHcCCCEEEeccccCCCHHHHHHHHHHHHHhcCCCEEEEcchHH
Confidence 4445554322222221 1 1578899999999999999975433
No 70
>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptor, the GABAb receptor, the calcium-sensing receptor (CaSR), the T1R taste receptor, and a small group of uncharacterized orphan receptors.
Probab=59.75 E-value=1.1e+02 Score=26.11 Aligned_cols=74 Identities=8% Similarity=0.052 Sum_probs=38.8
Q ss_pred eEEEEEcCChH---HHHHHHHHhcCCcEEEEeccCCcccchhcccccchhhhheeeccccccccccCcccceeeeeeee
Q 030516 96 FVVEVVEGDAR---NILCEAVEKHHASILVVGSHGYGAIKRYKSTISCFIWYLIFSRVELGMVNCFGYYSYLSIIKRTQ 171 (176)
Q Consensus 96 v~~~v~~G~~~---~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~gvs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (176)
..+.+..+... ..+.+.+++...+.+.+|+-+-...........+.....+...... ...+|+.+|++-..|..
T Consensus 232 arvIvl~~~~~~~~~l~~~~~~~~~~~~~wi~s~~w~~~~~~~~~~~~~~~G~lg~~~~~--~~~~~f~~fl~~l~~~~ 308 (469)
T cd06365 232 AKVIIIYGDTDSLLEVSFRLWQYLLIGKVWITTSQWDVTTSPKDFTLNSFHGTLIFSHHH--SEIPGFKDFLQTVNPSK 308 (469)
T ss_pred CeEEEEEcCcHHHHHHHHHHHHhccCceEEEeeccccccccccccccceeeEEEEEEecc--CcCcchHHHhhccCccc
Confidence 34445555432 3468888888899999998764322222211111122222222121 24478888887766643
No 71
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=59.35 E-value=20 Score=24.87 Aligned_cols=112 Identities=13% Similarity=0.107 Sum_probs=65.4
Q ss_pred CEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHH
Q 030516 7 QTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKE 86 (176)
Q Consensus 7 ~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 86 (176)
+||++++-++.....+.++..++.+. |.+|.++-. +.+++.+....
T Consensus 1 k~i~l~vtGs~~~~~~~~~l~~L~~~------g~~v~vv~S---------------------------~~A~~~~~~~~- 46 (129)
T PF02441_consen 1 KRILLGVTGSIAAYKAPDLLRRLKRA------GWEVRVVLS---------------------------PSAERFVTPEG- 46 (129)
T ss_dssp -EEEEEE-SSGGGGGHHHHHHHHHTT------TSEEEEEES---------------------------HHHHHHSHHHG-
T ss_pred CEEEEEEECHHHHHHHHHHHHHHhhC------CCEEEEEEC---------------------------CcHHHHhhhhc-
Confidence 68999999999999998888888877 678777633 22223333222
Q ss_pred HhhhcCCcceEEE---EEcCChHHHHHHHHHhcCCcEEEEeccCCcccchhcccccchh-----hhheeecccccccccc
Q 030516 87 ICSSKSVHDFVVE---VVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKSTISCFI-----WYLIFSRVELGMVNCF 158 (176)
Q Consensus 87 ~~~~~~~~~v~~~---v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~gvs~~~-----~~~~~~~~~~~~~~~~ 158 (176)
.... ++..+ ...++....+ +..+ .+|++|+..-....+.++-.|.++-. ...+..+.||.+++..
T Consensus 47 ---~~~~-~v~~~~~~~~~~~~~~~~-~~~~--~~D~~vVaPaT~NtlaKiA~GiaD~l~~~~~~~~l~~~~pvvi~P~m 119 (129)
T PF02441_consen 47 ---LTGE-PVYTDWDTWDRGDPAEHI-ELSR--WADAMVVAPATANTLAKIANGIADNLLTRVALAALKEGKPVVIAPAM 119 (129)
T ss_dssp ---HCCS-CEECTHCTCSTTTTTCHH-HHHH--TESEEEEEEEEHHHHHHHHTT--SSHHHHHHHHHHHTTCGEEEEEEE
T ss_pred ---cccc-hhhhccccCCCCCCcCcc-cccc--cCCEEEEcccCHHHHHHHHhCCcchHHHHHHHHHccCCCCeEEEEeC
Confidence 1111 11111 1223334333 3355 69999999999988888887766522 2222336777766554
Q ss_pred C
Q 030516 159 G 159 (176)
Q Consensus 159 ~ 159 (176)
-
T Consensus 120 n 120 (129)
T PF02441_consen 120 N 120 (129)
T ss_dssp S
T ss_pred C
Confidence 3
No 72
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=59.18 E-value=90 Score=24.88 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.0
Q ss_pred hHHHHHHHHHhcCCcEEEEeccCC
Q 030516 105 ARNILCEAVEKHHASILVVGSHGY 128 (176)
Q Consensus 105 ~~~~I~~~a~~~~~DlIV~Gs~g~ 128 (176)
.-+.|.+.|++.++|.|+=|+...
T Consensus 101 v~~~l~~~a~~~Gyd~V~dGtNas 124 (269)
T COG1606 101 VYSTLVEEAEKRGYDVVADGTNAS 124 (269)
T ss_pred HHHHHHHHHHHcCCCEEEeCCcHH
Confidence 578899999999999999998653
No 73
>PF03746 LamB_YcsF: LamB/YcsF family; InterPro: IPR005501 This entry represents the uncharacterised protein family UPF0271, including LamB. The lam locus of Emericella nidulans (Aspergillus nidulans) consists of two divergently transcribed genes, lamA and lamB, involved in the utilization of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression []. The exact molecular function of the proteins in this family is unknown.; PDB: 1V6T_A 1XW8_A 2XU2_A 2DFA_A.
Probab=58.87 E-value=88 Score=24.63 Aligned_cols=108 Identities=10% Similarity=0.139 Sum_probs=62.1
Q ss_pred CEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEe-cCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHH
Q 030516 7 QTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHAR-PSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAK 85 (176)
Q Consensus 7 ~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 85 (176)
...-|+.-+.......++..+++|++. + --+..|.- |+.... +. ...+.-.++..+....++..+.
T Consensus 28 ~saNIACG~HAGDp~~M~~tv~lA~~~-----g-V~iGAHPsyPD~~gF-GR------r~m~~s~~el~~~v~yQigaL~ 94 (242)
T PF03746_consen 28 SSANIACGFHAGDPETMRRTVRLAKEH-----G-VAIGAHPSYPDREGF-GR------RSMDISPEELRDSVLYQIGALQ 94 (242)
T ss_dssp SEEEEE-SSSS--HHHHHHHHHHHHHT-----T--EEEEE---S-TTTT-T-------S-----HHHHHHHHHHHHHHHH
T ss_pred hhHHHhhcccccCHHHHHHHHHHHHHc-----C-CEeccCCCCCCCCCC-CC------CCCCCCHHHHHHHHHHHHHHHH
Confidence 344566667777788899999999993 3 33345543 333221 11 1112224666677777788888
Q ss_pred HHhhhcCCcceEEEEEcC----------ChHHHHHHHHHhcCCcEEEEeccCC
Q 030516 86 EICSSKSVHDFVVEVVEG----------DARNILCEAVEKHHASILVVGSHGY 128 (176)
Q Consensus 86 ~~~~~~~~~~v~~~v~~G----------~~~~~I~~~a~~~~~DlIV~Gs~g~ 128 (176)
..+...+. ++...--.| ..++.|++.+++.+.++.++|..+.
T Consensus 95 ~~a~~~g~-~l~hVKPHGALYn~~~~d~~lA~~i~~ai~~~~~~l~l~~~ags 146 (242)
T PF03746_consen 95 AIAAAEGV-PLHHVKPHGALYNMAAKDEELARAIAEAIKAFDPDLPLYGLAGS 146 (242)
T ss_dssp HHHHHTT---EEEE---HHHHHHHHH-HHHHHHHHHHHHHH-TT-EEEEETTS
T ss_pred HHHHHcCC-eeEEecccHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEEcCCc
Confidence 88877764 344433333 3689999999999999999998765
No 74
>TIGR02766 crypt_chrom_pln cryptochrome, plant family. At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light.
Probab=58.62 E-value=1.2e+02 Score=26.08 Aligned_cols=73 Identities=11% Similarity=-0.007 Sum_probs=46.0
Q ss_pred EEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcE
Q 030516 41 KLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASI 120 (176)
Q Consensus 41 ~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~Dl 120 (176)
+|..|++.++..... .. .......-..+.+..+.+.+.+.|. +..+ +..|++.+.|.+.+++.+++-
T Consensus 24 ~vlpvyi~dp~~~~~--~~---------~~~~~~~fl~~sL~~L~~~L~~~G~-~L~v-~~~g~~~~~l~~l~~~~~i~~ 90 (475)
T TIGR02766 24 PVIPVFVWAPEEEGQ--YY---------PGRVSRWWLKQSLAHLDQSLRSLGT-CLVT-IRSTDTVAALLDCVRSTGATR 90 (475)
T ss_pred CEEEEEEechHHhcc--cc---------ccHHHHHHHHHHHHHHHHHHHHcCC-ceEE-EeCCCHHHHHHHHHHHcCCCE
Confidence 688888887543210 00 0112223455666777777777663 2332 125899999999999999998
Q ss_pred EEEecc
Q 030516 121 LVVGSH 126 (176)
Q Consensus 121 IV~Gs~ 126 (176)
|..-..
T Consensus 91 v~~~~~ 96 (475)
T TIGR02766 91 LFFNHL 96 (475)
T ss_pred EEEecc
Confidence 877654
No 75
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=58.50 E-value=31 Score=27.83 Aligned_cols=57 Identities=12% Similarity=0.152 Sum_probs=33.1
Q ss_pred EcCC-hHHHHHHHHHhc-------CCcEEEEeccCCcccchhcccccchhhhheeeccccccccccC
Q 030516 101 VEGD-ARNILCEAVEKH-------HASILVVGSHGYGAIKRYKSTISCFIWYLIFSRVELGMVNCFG 159 (176)
Q Consensus 101 ~~G~-~~~~I~~~a~~~-------~~DlIV~Gs~g~~~l~~~l~gvs~~~~~~~~~~~~~~~~~~~~ 159 (176)
+.|+ ....|++..++- ++|+||+++-|-+.-.=|-| +++...-.....|+|+|-.-|
T Consensus 51 vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~F--N~e~varai~~~~~PvisaIG 115 (319)
T PF02601_consen 51 VQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAF--NDEEVARAIAASPIPVISAIG 115 (319)
T ss_pred ccccchHHHHHHHHHHHHhccccccccEEEEecCCCChHHhccc--ChHHHHHHHHhCCCCEEEecC
Confidence 4565 566666665554 48999999877654333324 344444444455555555554
No 76
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=57.93 E-value=5.2 Score=28.97 Aligned_cols=58 Identities=14% Similarity=0.135 Sum_probs=23.1
Q ss_pred HHHHHHHHHhcCCcEEEEeccCCcccchhcccccchhhh----heeeccccccccccCcccce
Q 030516 106 RNILCEAVEKHHASILVVGSHGYGAIKRYKSTISCFIWY----LIFSRVELGMVNCFGYYSYL 164 (176)
Q Consensus 106 ~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~gvs~~~~~----~~~~~~~~~~~~~~~~~~~~ 164 (176)
.+.|.++.+++.+|+|++|..+.. ..++.--+.+.+.. -.+..++|-+|+..+-.-|+
T Consensus 52 ~~~l~~~i~~~kP~vI~v~g~~~~-s~~l~~~v~~~v~~~~~~~~~~~i~V~~v~~~~A~lY~ 113 (150)
T PF14639_consen 52 MERLKKFIEKHKPDVIAVGGNSRE-SRKLYDDVRDIVEELDEDEQMPPIPVVIVDDEVARLYS 113 (150)
T ss_dssp HHHHHHHHHHH--SEEEE--SSTH-HHHHHHHHHHHHHHTTB-TTS-B--EEE---TTHHHHH
T ss_pred HHHHHHHHHHcCCeEEEEcCCChh-HHHHHHHHHHHHHHhhhcccCCCceEEEECcHHHHHHh
Confidence 445556666667777777543331 11222112222221 23456788888888776664
No 77
>PRK05920 aromatic acid decarboxylase; Validated
Probab=57.16 E-value=30 Score=26.38 Aligned_cols=36 Identities=14% Similarity=0.263 Sum_probs=29.9
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEE
Q 030516 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVH 46 (176)
Q Consensus 5 ~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvh 46 (176)
+.++|++++-+|-.+.++++..-.|.+. |.+|.++-
T Consensus 2 ~~krIllgITGsiaa~ka~~lvr~L~~~------g~~V~vi~ 37 (204)
T PRK05920 2 KMKRIVLAITGASGAIYGVRLLECLLAA------DYEVHLVI 37 (204)
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHHHHC------CCEEEEEE
Confidence 3489999999999999999999888776 66766664
No 78
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=56.00 E-value=44 Score=24.47 Aligned_cols=25 Identities=12% Similarity=0.239 Sum_probs=21.8
Q ss_pred ChHHHHHHHHHhcCCcEEEEeccCC
Q 030516 104 DARNILCEAVEKHHASILVVGSHGY 128 (176)
Q Consensus 104 ~~~~~I~~~a~~~~~DlIV~Gs~g~ 128 (176)
+..+.|++.+++.++|+|++|--..
T Consensus 88 ~~~~~i~~~I~~~~pdiv~vglG~P 112 (172)
T PF03808_consen 88 EEEEAIINRINASGPDIVFVGLGAP 112 (172)
T ss_pred hhHHHHHHHHHHcCCCEEEEECCCC
Confidence 4689999999999999999996654
No 79
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=55.35 E-value=1.4e+02 Score=25.75 Aligned_cols=84 Identities=13% Similarity=0.089 Sum_probs=53.2
Q ss_pred EEEEEecCC-HhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHH
Q 030516 8 TMVVGIDDS-EQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKE 86 (176)
Q Consensus 8 ~ILVavD~s-~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 86 (176)
-||++=|.. ..|.-+|+-+.++|.+ + .+++|....+. ++.+-
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~------~---~vLYVsGEES~----------------------------~Qikl 137 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKR------G---KVLYVSGEESL----------------------------QQIKL 137 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhc------C---cEEEEeCCcCH----------------------------HHHHH
Confidence 466666655 4688899999999998 3 56666432221 11112
Q ss_pred HhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCC
Q 030516 87 ICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGY 128 (176)
Q Consensus 87 ~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~ 128 (176)
++++.+...-...+..-.-.+.|.+.+++.++|++|+.+-.-
T Consensus 138 RA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT 179 (456)
T COG1066 138 RADRLGLPTNNLYLLAETNLEDIIAELEQEKPDLVVIDSIQT 179 (456)
T ss_pred HHHHhCCCccceEEehhcCHHHHHHHHHhcCCCEEEEeccce
Confidence 222333222334455555788999999999999999997654
No 80
>PRK12569 hypothetical protein; Provisional
Probab=55.33 E-value=1e+02 Score=24.32 Aligned_cols=98 Identities=12% Similarity=0.124 Sum_probs=61.0
Q ss_pred CHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEe-cCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHHHhhhcCCc
Q 030516 16 SEQSTYALQWTLDHFFANSTVNPPFKLVIVHAR-PSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVH 94 (176)
Q Consensus 16 s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 94 (176)
.......++...++|++. +..| .-|.- |+... .+. ...+.-.++..+....++..++..+...+.
T Consensus 42 HAGDp~~M~~tv~lA~~~-----~V~I-GAHPsyPD~~g------FGR-r~m~~s~~el~~~v~yQigaL~~~~~~~g~- 107 (245)
T PRK12569 42 HAGDPNIMRRTVELAKAH-----GVGI-GAHPGFRDLVG------FGR-RHINASPQELVNDVLYQLGALREFARAHGV- 107 (245)
T ss_pred cCCCHHHHHHHHHHHHHc-----CCEe-ccCCCCCcCCC------CCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-
Confidence 334456788888999983 3332 23332 22221 111 112223466777777888888888877763
Q ss_pred ceEEEEEc-C----------ChHHHHHHHHHhcCCcEEEEeccCC
Q 030516 95 DFVVEVVE-G----------DARNILCEAVEKHHASILVVGSHGY 128 (176)
Q Consensus 95 ~v~~~v~~-G----------~~~~~I~~~a~~~~~DlIV~Gs~g~ 128 (176)
++.. |+. | ..+++|++.+++.+.++++++..+.
T Consensus 108 ~l~h-VKPHGALYN~~~~d~~la~av~~ai~~~~~~l~l~~~~~s 151 (245)
T PRK12569 108 RLQH-VKPHGALYMHAARDEALARLLVEALARLDPLLILYCMDGS 151 (245)
T ss_pred eeEE-ecCCHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEecCCc
Confidence 3443 433 3 3689999999999999999997664
No 81
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=55.01 E-value=58 Score=23.82 Aligned_cols=57 Identities=12% Similarity=0.254 Sum_probs=39.2
Q ss_pred HHHHHHHHhhhcCCcceEEEEEcCC-h---HHHHHHHHHhcCCcEEEEeccCCcccchhccc
Q 030516 80 VVEEAKEICSSKSVHDFVVEVVEGD-A---RNILCEAVEKHHASILVVGSHGYGAIKRYKST 137 (176)
Q Consensus 80 ~l~~~~~~~~~~~~~~v~~~v~~G~-~---~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~g 137 (176)
.++++...+++++. +++..+..-. . ...+.+.+++.+++++|.+.-....+...+-+
T Consensus 13 ~~~~a~~~L~~~gi-~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpgvva~ 73 (156)
T TIGR01162 13 TMKKAADILEEFGI-PYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPGMVAA 73 (156)
T ss_pred HHHHHHHHHHHcCC-CeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHHHHHh
Confidence 55666667777775 5888877632 3 34445555667899999998888888877644
No 82
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=54.73 E-value=1.5e+02 Score=28.70 Aligned_cols=92 Identities=13% Similarity=0.176 Sum_probs=62.0
Q ss_pred CCCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHH
Q 030516 4 AETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEE 83 (176)
Q Consensus 4 ~~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (176)
..+.+++++==+-....=|++.|...+.. |-+|.++-. +. --++|+.+.
T Consensus 614 kpMDRLiCGDVGFGKTEVAmRAAFkAV~~------GKQVAvLVP--TT-----------------------lLA~QHy~t 662 (1139)
T COG1197 614 KPMDRLICGDVGFGKTEVAMRAAFKAVMD------GKQVAVLVP--TT-----------------------LLAQQHYET 662 (1139)
T ss_pred CcchheeecCcCCcHHHHHHHHHHHHhcC------CCeEEEEcc--cH-----------------------HhHHHHHHH
Confidence 34555555544556677778777666665 557777622 11 234778888
Q ss_pred HHHHhhhcCCcceEEEEE--cCChHHHHHHHHHhcCCcEEEEeccCC
Q 030516 84 AKEICSSKSVHDFVVEVV--EGDARNILCEAVEKHHASILVVGSHGY 128 (176)
Q Consensus 84 ~~~~~~~~~~~~v~~~v~--~G~~~~~I~~~a~~~~~DlIV~Gs~g~ 128 (176)
+++++..+|+ +++..-. .......+++..++..+|+ |+|||..
T Consensus 663 FkeRF~~fPV-~I~~LSRF~s~kE~~~il~~la~G~vDI-vIGTHrL 707 (1139)
T COG1197 663 FKERFAGFPV-RIEVLSRFRSAKEQKEILKGLAEGKVDI-VIGTHRL 707 (1139)
T ss_pred HHHHhcCCCe-eEEEecccCCHHHHHHHHHHHhcCCccE-EEechHh
Confidence 9999988874 5664433 3447888999999999996 5688864
No 83
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=54.60 E-value=43 Score=24.30 Aligned_cols=57 Identities=18% Similarity=0.218 Sum_probs=34.7
Q ss_pred HHHHHHHHhhhcCCcceEEEEEcCC-hHHHHHHHHHh---cCCcEEEEeccCCcccchhccc
Q 030516 80 VVEEAKEICSSKSVHDFVVEVVEGD-ARNILCEAVEK---HHASILVVGSHGYGAIKRYKST 137 (176)
Q Consensus 80 ~l~~~~~~~~~~~~~~v~~~v~~G~-~~~~I~~~a~~---~~~DlIV~Gs~g~~~l~~~l~g 137 (176)
.++++...+++++. .++..+..-. ..+.+.+++++ .+++.+|.++-....+...+-|
T Consensus 15 ~~~~a~~~L~~~gi-~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lpgvva~ 75 (150)
T PF00731_consen 15 IAEEAAKTLEEFGI-PYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSAALPGVVAS 75 (150)
T ss_dssp HHHHHHHHHHHTT--EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS--HHHHHHH
T ss_pred HHHHHHHHHHHcCC-CEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCcccchhhhee
Confidence 45566666767774 5888777643 45556666554 4679888888777777776643
No 84
>PRK05406 LamB/YcsF family protein; Provisional
Probab=54.36 E-value=1.1e+02 Score=24.23 Aligned_cols=100 Identities=15% Similarity=0.140 Sum_probs=61.9
Q ss_pred CCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEe-cCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHHHhhhcCC
Q 030516 15 DSEQSTYALQWTLDHFFANSTVNPPFKLVIVHAR-PSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSV 93 (176)
Q Consensus 15 ~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 93 (176)
+.......++..+++|++. +..| .-|.- |+.. +.+.. ..+--.++..+....++..+...+...+.
T Consensus 38 ~HAGDp~~M~~tv~lA~~~-----gV~I-GAHPgypD~~------gFGRR-~m~~s~~el~~~v~yQigAL~~~a~~~g~ 104 (246)
T PRK05406 38 FHAGDPAVMRRTVRLAKEN-----GVAI-GAHPGYPDLE------GFGRR-NMDLSPEELYALVLYQIGALQAIARAAGG 104 (246)
T ss_pred ccCCCHHHHHHHHHHHHHc-----CCeE-ccCCCCCccC------CCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3334456788888999983 2222 23332 2221 11111 11223466777778888888888887763
Q ss_pred cceEEEEEcC----------ChHHHHHHHHHhcCCcEEEEeccCC
Q 030516 94 HDFVVEVVEG----------DARNILCEAVEKHHASILVVGSHGY 128 (176)
Q Consensus 94 ~~v~~~v~~G----------~~~~~I~~~a~~~~~DlIV~Gs~g~ 128 (176)
++...--.| ..++++++.+++.+.++++++..+.
T Consensus 105 -~l~hVKPHGALYN~~~~d~~~a~av~~ai~~~~~~l~l~~~~~s 148 (246)
T PRK05406 105 -RVSHVKPHGALYNMAAKDPALADAVAEAVAAVDPSLILVGLAGS 148 (246)
T ss_pred -eeEEeCccHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEecCCh
Confidence 344433233 3689999999999999999997664
No 85
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=54.20 E-value=32 Score=25.81 Aligned_cols=36 Identities=14% Similarity=0.191 Sum_probs=29.1
Q ss_pred CCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEE
Q 030516 6 TQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVH 46 (176)
Q Consensus 6 ~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvh 46 (176)
+++|++++-+|-.+-++.+.+..|.+.. |++|.++-
T Consensus 1 ~k~IllgVTGsiaa~ka~~l~~~L~k~~-----g~~V~vv~ 36 (185)
T PRK06029 1 MKRLIVGISGASGAIYGVRLLQVLRDVG-----EIETHLVI 36 (185)
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHhhc-----CCeEEEEE
Confidence 3689999999999999999998887741 56766663
No 86
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=53.15 E-value=80 Score=23.14 Aligned_cols=55 Identities=20% Similarity=0.318 Sum_probs=38.1
Q ss_pred HHHHHHHHhhhcCCcceEEEEEcCC-hHH---HHHHHHHhcCCcEEEEeccCCcccchhc
Q 030516 80 VVEEAKEICSSKSVHDFVVEVVEGD-ARN---ILCEAVEKHHASILVVGSHGYGAIKRYK 135 (176)
Q Consensus 80 ~l~~~~~~~~~~~~~~v~~~v~~G~-~~~---~I~~~a~~~~~DlIV~Gs~g~~~l~~~l 135 (176)
.++++.+.+++++. +++.+++.-+ .-+ ...+.+++.++..||-|.-|--.+.++.
T Consensus 17 ~mk~Aa~~L~~fgi-~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPGmv 75 (162)
T COG0041 17 TMKKAAEILEEFGV-PYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPGMV 75 (162)
T ss_pred HHHHHHHHHHHcCC-CeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcchhh
Confidence 45556667777775 6888887643 333 4445567778999999998877777664
No 87
>PRK14974 cell division protein FtsY; Provisional
Probab=52.09 E-value=1.3e+02 Score=24.73 Aligned_cols=30 Identities=10% Similarity=0.213 Sum_probs=21.5
Q ss_pred CChHHH---HHHHHHhcCCcEEEEeccCCcccc
Q 030516 103 GDARNI---LCEAVEKHHASILVVGSHGYGAIK 132 (176)
Q Consensus 103 G~~~~~---I~~~a~~~~~DlIV~Gs~g~~~l~ 132 (176)
++|... .+++++..+.|+|++-+.|+....
T Consensus 205 ~dp~~v~~~ai~~~~~~~~DvVLIDTaGr~~~~ 237 (336)
T PRK14974 205 ADPAAVAYDAIEHAKARGIDVVLIDTAGRMHTD 237 (336)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEECCCccCCc
Confidence 456543 345666678999999999997643
No 88
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=52.01 E-value=80 Score=22.08 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=26.5
Q ss_pred EEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEe
Q 030516 8 TMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHAR 48 (176)
Q Consensus 8 ~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~ 48 (176)
+|+|++.+..+|..++..+.+...+ ..++.++|+-
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~------~~~~~~v~~d 35 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPE------LKPVPVIFLD 35 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhccc------ccCceEEEeC
Confidence 5889999999999998888776553 1267777773
No 89
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=51.90 E-value=46 Score=23.43 Aligned_cols=34 Identities=18% Similarity=0.100 Sum_probs=25.2
Q ss_pred eEEEEEcCC-hHHHHHHHHHhcCCcEEEEeccCCc
Q 030516 96 FVVEVVEGD-ARNILCEAVEKHHASILVVGSHGYG 129 (176)
Q Consensus 96 v~~~v~~G~-~~~~I~~~a~~~~~DlIV~Gs~g~~ 129 (176)
+++.-..++ +.+.+++.|+++++|.|++.+..-+
T Consensus 31 feVi~lg~~~s~e~~v~aa~e~~adii~iSsl~~~ 65 (132)
T TIGR00640 31 FDVDVGPLFQTPEEIARQAVEADVHVVGVSSLAGG 65 (132)
T ss_pred cEEEECCCCCCHHHHHHHHHHcCCCEEEEcCchhh
Confidence 344333433 7889999999999999999876643
No 90
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=51.32 E-value=58 Score=20.27 Aligned_cols=27 Identities=15% Similarity=0.298 Sum_probs=23.0
Q ss_pred CCEEEEEecCCHhHHHHHHHHHHHhcc
Q 030516 6 TQTMVVGIDDSEQSTYALQWTLDHFFA 32 (176)
Q Consensus 6 ~~~ILVavD~s~~s~~al~~a~~la~~ 32 (176)
.++|.+++|.++..+.+.+...+....
T Consensus 43 ~~~vii~~D~D~aG~~a~~~~~~~l~~ 69 (79)
T cd03364 43 AKEVILAFDGDEAGQKAALRALELLLK 69 (79)
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHHH
Confidence 388999999999999888887777766
No 91
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=50.98 E-value=50 Score=24.55 Aligned_cols=40 Identities=8% Similarity=0.052 Sum_probs=29.7
Q ss_pred CcEEEEeccCCcccchhcccccchhhhhe-----eeccccccccc
Q 030516 118 ASILVVGSHGYGAIKRYKSTISCFIWYLI-----FSRVELGMVNC 157 (176)
Q Consensus 118 ~DlIV~Gs~g~~~l~~~l~gvs~~~~~~~-----~~~~~~~~~~~ 157 (176)
+|++|+.--....+.++-.|.++-..-.. =.+.|++++++
T Consensus 79 ~D~~vVaPaTaNtlakiA~GiaD~l~t~~~~~~lk~~~pvvi~P~ 123 (174)
T TIGR02699 79 YDFLLIAPATANTVAKIAYGIADTLVTNAVIQAAKAKVPVYIMPS 123 (174)
T ss_pred cCEEEEEeCCHHHHHHHHccccCcHHHHHHHHHhccCCCEEEEEC
Confidence 79999999999888888888765332222 25889887776
No 92
>PF13662 Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=50.97 E-value=33 Score=21.54 Aligned_cols=27 Identities=11% Similarity=0.265 Sum_probs=22.3
Q ss_pred CCEEEEEecCCHhHHHHHHHHHHHhcc
Q 030516 6 TQTMVVGIDDSEQSTYALQWTLDHFFA 32 (176)
Q Consensus 6 ~~~ILVavD~s~~s~~al~~a~~la~~ 32 (176)
.++|.+++|.+...+.+..+..+....
T Consensus 46 ~~~Vii~~D~D~~G~~~a~~i~~~l~~ 72 (81)
T PF13662_consen 46 VKEVIIAFDNDKAGEKAAQKIAKKLLP 72 (81)
T ss_dssp -SEEEEEEESSHHHHHHHHHHHHHHG-
T ss_pred CceEEEEeCcCHHHHHHHHHHHHHHHh
Confidence 488999999999999999998886654
No 93
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=50.58 E-value=1.2e+02 Score=23.62 Aligned_cols=78 Identities=17% Similarity=0.153 Sum_probs=47.9
Q ss_pred HHHHHHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcccchhcc-ccc-chhhhheeecccccccccc
Q 030516 81 VEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKS-TIS-CFIWYLIFSRVELGMVNCF 158 (176)
Q Consensus 81 l~~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~-gvs-~~~~~~~~~~~~~~~~~~~ 158 (176)
..+....|.+.+. ....-.+|...+.+++..-+.+.+.+|++....+.-.+|++ ..+ +++..+...+-.-. ||+-
T Consensus 101 k~rve~lc~~lGl--~~~~PLWg~d~~ell~e~~~~Gf~~~Iv~Vsa~gL~~~~lGr~i~~~~~e~l~~l~~~yg-i~~~ 177 (223)
T COG2102 101 KERVERLCEELGL--KVYAPLWGRDPEELLEEMVEAGFEAIIVAVSAEGLDESWLGRRIDREFLEELKSLNRRYG-IHPA 177 (223)
T ss_pred HHHHHHHHHHhCC--EEeecccCCCHHHHHHHHHHcCCeEEEEEEeccCCChHHhCCccCHHHHHHHHHHHHhcC-CCcc
Confidence 3344445555553 33334556544555555555779999999998887777773 455 67777776655544 6665
Q ss_pred Ccc
Q 030516 159 GYY 161 (176)
Q Consensus 159 ~~~ 161 (176)
|++
T Consensus 178 GEg 180 (223)
T COG2102 178 GEG 180 (223)
T ss_pred CCC
Confidence 554
No 94
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=50.53 E-value=1.6e+02 Score=24.99 Aligned_cols=33 Identities=12% Similarity=0.359 Sum_probs=26.0
Q ss_pred EEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEec
Q 030516 8 TMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (176)
Q Consensus 8 ~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~ 49 (176)
+|++++++.-+|.-++.++.+. |.+|+.+|+-.
T Consensus 1 kVvla~SGGlDSsvll~~l~e~---------g~~V~av~id~ 33 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREK---------GYEVIAYTADV 33 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHc---------CCEEEEEEEec
Confidence 5899999999999988877532 34899999843
No 95
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.64 E-value=1.7e+02 Score=25.12 Aligned_cols=51 Identities=16% Similarity=0.221 Sum_probs=31.5
Q ss_pred HHHHHHHHhhhcCCcceEEEEEcCChH---HHHHHHHHhcCCcEEEEeccCCccc
Q 030516 80 VVEEAKEICSSKSVHDFVVEVVEGDAR---NILCEAVEKHHASILVVGSHGYGAI 131 (176)
Q Consensus 80 ~l~~~~~~~~~~~~~~v~~~v~~G~~~---~~I~~~a~~~~~DlIV~Gs~g~~~l 131 (176)
.++++++++.+... ++-..-..-+|+ ..=++-.+++++|+|++.|.||-.-
T Consensus 144 AfDQLkqnA~k~~i-P~ygsyte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~q 197 (483)
T KOG0780|consen 144 AFDQLKQNATKARV-PFYGSYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQ 197 (483)
T ss_pred hHHHHHHHhHhhCC-eeEecccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhh
Confidence 45556666655543 243333444444 4445667788999999999998433
No 96
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=49.38 E-value=1.7e+02 Score=25.12 Aligned_cols=33 Identities=27% Similarity=0.257 Sum_probs=21.8
Q ss_pred EEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEE
Q 030516 9 MVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHA 47 (176)
Q Consensus 9 ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv 47 (176)
++++.-++..+..+...|..+... +.++.++..
T Consensus 99 ~lvG~~GsGKTTtaakLA~~L~~~------g~kV~lV~~ 131 (437)
T PRK00771 99 MLVGLQGSGKTTTAAKLARYFKKK------GLKVGLVAA 131 (437)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHc------CCeEEEecC
Confidence 456666777777777777666654 557777754
No 97
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=48.66 E-value=69 Score=23.78 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=19.1
Q ss_pred HHHHHHHHHhcCCcEEEEeccCC
Q 030516 106 RNILCEAVEKHHASILVVGSHGY 128 (176)
Q Consensus 106 ~~~I~~~a~~~~~DlIV~Gs~g~ 128 (176)
.++|++.+++.++|+|++|--..
T Consensus 89 ~~~i~~~I~~s~~dil~VglG~P 111 (177)
T TIGR00696 89 RKAALAKIARSGAGIVFVGLGCP 111 (177)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCc
Confidence 47799999999999999985543
No 98
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=48.20 E-value=56 Score=23.18 Aligned_cols=26 Identities=15% Similarity=0.032 Sum_probs=22.3
Q ss_pred CChHHHHHHHHHhcCCcEEEEeccCC
Q 030516 103 GDARNILCEAVEKHHASILVVGSHGY 128 (176)
Q Consensus 103 G~~~~~I~~~a~~~~~DlIV~Gs~g~ 128 (176)
..+.+.+++.|+++++|+|.+++.--
T Consensus 38 ~v~~e~~v~aa~~~~adiVglS~l~~ 63 (134)
T TIGR01501 38 LSPQEEFIKAAIETKADAILVSSLYG 63 (134)
T ss_pred CCCHHHHHHHHHHcCCCEEEEecccc
Confidence 34899999999999999999987554
No 99
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=48.19 E-value=56 Score=22.33 Aligned_cols=33 Identities=15% Similarity=0.092 Sum_probs=25.6
Q ss_pred eEEEEEcC-ChHHHHHHHHHhcCCcEEEEeccCC
Q 030516 96 FVVEVVEG-DARNILCEAVEKHHASILVVGSHGY 128 (176)
Q Consensus 96 v~~~v~~G-~~~~~I~~~a~~~~~DlIV~Gs~g~ 128 (176)
+++..... .|.+.+++.+++.++|.|+++....
T Consensus 28 ~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~~~~ 61 (122)
T cd02071 28 FEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLSG 61 (122)
T ss_pred CEEEECCCCCCHHHHHHHHHHcCCCEEEEcccch
Confidence 34444433 4899999999999999999987754
No 100
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=48.06 E-value=1.5e+02 Score=24.04 Aligned_cols=39 Identities=18% Similarity=0.292 Sum_probs=30.6
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEe
Q 030516 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHAR 48 (176)
Q Consensus 5 ~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~ 48 (176)
.+.+.++++.+..+|.-++..+.+.+.. .+.++.++|+-
T Consensus 18 ~f~~~vv~~SGGKDS~VlLhLa~kaf~~-----~~~p~~vl~ID 56 (294)
T TIGR02039 18 EFERPVMLYSIGKDSSVLLHLARKAFYP-----GPLPFPLLHVD 56 (294)
T ss_pred hcCCcEEEEecChHHHHHHHHHHHHhcc-----cCCCeEEEEEe
Confidence 3566788999999999999998887764 13478899983
No 101
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=47.76 E-value=19 Score=25.54 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=17.4
Q ss_pred hHHHHHHHHHhcCCcEEEEe
Q 030516 105 ARNILCEAVEKHHASILVVG 124 (176)
Q Consensus 105 ~~~~I~~~a~~~~~DlIV~G 124 (176)
..+.|.+.+++++++.||+|
T Consensus 42 ~~~~l~~~i~~~~i~~iVvG 61 (138)
T PRK00109 42 DWDRLEKLIKEWQPDGLVVG 61 (138)
T ss_pred HHHHHHHHHHHhCCCEEEEe
Confidence 47888889999999999999
No 102
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=47.47 E-value=1.7e+02 Score=24.58 Aligned_cols=35 Identities=11% Similarity=0.089 Sum_probs=27.0
Q ss_pred CCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEec
Q 030516 6 TQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (176)
Q Consensus 6 ~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~ 49 (176)
-.++++++++.-+|.-++-++.+ + |.++..+|...
T Consensus 176 ~gkvvvllSGGiDS~vaa~l~~k---~------G~~v~av~~~~ 210 (394)
T PRK01565 176 SGKALLLLSGGIDSPVAGYLAMK---R------GVEIEAVHFHS 210 (394)
T ss_pred CCCEEEEECCChhHHHHHHHHHH---C------CCEEEEEEEeC
Confidence 46899999999999888766644 3 56888998843
No 103
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=47.25 E-value=1.5e+02 Score=25.46 Aligned_cols=28 Identities=11% Similarity=0.101 Sum_probs=18.1
Q ss_pred hHHHHHHHHHhcCCcEEEEeccCCcccc
Q 030516 105 ARNILCEAVEKHHASILVVGSHGYGAIK 132 (176)
Q Consensus 105 ~~~~I~~~a~~~~~DlIV~Gs~g~~~l~ 132 (176)
..++|-.+.+..++|+|++.+.|+..-.
T Consensus 308 L~~aL~~lk~~~~~DvVLIDTaGRs~kd 335 (436)
T PRK11889 308 MTRALTYFKEEARVDYILIDTAGKNYRA 335 (436)
T ss_pred HHHHHHHHHhccCCCEEEEeCccccCcC
Confidence 3333433333347999999999997643
No 104
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=46.79 E-value=49 Score=28.23 Aligned_cols=57 Identities=19% Similarity=0.269 Sum_probs=32.8
Q ss_pred EcCC-hHHHHHHHHH----hcCCcEEEEeccCCcccchhcccccchhhhheeeccccccccccC
Q 030516 101 VEGD-ARNILCEAVE----KHHASILVVGSHGYGAIKRYKSTISCFIWYLIFSRVELGMVNCFG 159 (176)
Q Consensus 101 ~~G~-~~~~I~~~a~----~~~~DlIV~Gs~g~~~l~~~l~gvs~~~~~~~~~~~~~~~~~~~~ 159 (176)
+.|+ ....|++..+ ..++|+||+++-|-+.-.=|-|. +....-...+.|+|+|-.-|
T Consensus 166 vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs~eDL~~Fn--~e~~~rai~~~~~Pvis~iG 227 (432)
T TIGR00237 166 VQGEGAVQSIVESIELANTKNECDVLIVGRGGGSLEDLWSFN--DEKVARAIFLSKIPIISAVG 227 (432)
T ss_pred ccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCCHHHhhhcC--cHHHHHHHHcCCCCEEEecC
Confidence 4466 5566666554 33479999998776544433354 43444444555555555554
No 105
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=46.30 E-value=44 Score=28.38 Aligned_cols=57 Identities=16% Similarity=0.236 Sum_probs=34.1
Q ss_pred EcCC-hHHHHHHHHHhcC---CcEEEEeccCCcccchhcccccchhhhheeeccccccccccC
Q 030516 101 VEGD-ARNILCEAVEKHH---ASILVVGSHGYGAIKRYKSTISCFIWYLIFSRVELGMVNCFG 159 (176)
Q Consensus 101 ~~G~-~~~~I~~~a~~~~---~DlIV~Gs~g~~~l~~~l~gvs~~~~~~~~~~~~~~~~~~~~ 159 (176)
++|+ ....|++..+.-+ +|+||+++-|-+.-.=|-|. ++...-...+.|+|+|-.-|
T Consensus 172 vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS~eDL~~Fn--~e~v~~ai~~~~~Pvis~IG 232 (438)
T PRK00286 172 VQGEGAAASIVAAIERANARGEDVLIVARGGGSLEDLWAFN--DEAVARAIAASRIPVISAVG 232 (438)
T ss_pred CcCccHHHHHHHHHHHhcCCCCCEEEEecCCCCHHHhhccC--cHHHHHHHHcCCCCEEEecc
Confidence 4476 6777777666554 59999998776533333343 44444444445666665554
No 106
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=45.52 E-value=79 Score=25.52 Aligned_cols=59 Identities=14% Similarity=0.223 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhhhcCCcceEEEEEcCC-hHHHHHHHHHhcCCcEEEEeccCCcccchhc
Q 030516 75 KIAARVVEEAKEICSSKSVHDFVVEVVEGD-ARNILCEAVEKHHASILVVGSHGYGAIKRYK 135 (176)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~~~v~~~v~~G~-~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l 135 (176)
...++.+.++.+.+.+.+. +.+.+..+.. -+..+++.+...++|.||.+. |-|.+.+..
T Consensus 16 ~~~~~~~~~~~~~l~~~g~-~~~~~~t~~~g~a~~~a~~a~~~~~D~via~G-GDGTv~evi 75 (301)
T COG1597 16 GKAKKLLREVEELLEEAGH-ELSVRVTEEAGDAIEIAREAAVEGYDTVIAAG-GDGTVNEVA 75 (301)
T ss_pred cchhhHHHHHHHHHHhcCC-eEEEEEeecCccHHHHHHHHHhcCCCEEEEec-CcchHHHHH
Confidence 3445666777777777764 4666665544 677778887778999988764 333344333
No 107
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=45.33 E-value=59 Score=27.76 Aligned_cols=66 Identities=14% Similarity=0.270 Sum_probs=42.1
Q ss_pred eEEEEEcCChHHH---HHHHHHhcCCcEEEEeccCCcccchhcccccchhhhheeeccccccccccCcccceeeeeee
Q 030516 96 FVVEVVEGDARNI---LCEAVEKHHASILVVGSHGYGAIKRYKSTISCFIWYLIFSRVELGMVNCFGYYSYLSIIKRT 170 (176)
Q Consensus 96 v~~~v~~G~~~~~---I~~~a~~~~~DlIV~Gs~g~~~l~~~l~gvs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (176)
+.......++.+. ..++-+ +.|+||......... .-.+++|... ++|+..++..|.|.|..+..+.
T Consensus 90 V~i~~~~e~~~~ll~~~~~f~~--~fdiVI~t~~~~~~~----~~L~~~c~~~---~iPlI~~~s~G~~G~v~v~~~~ 158 (425)
T cd01493 90 VNGSAVEESPEALLDNDPSFFS--QFTVVIATNLPESTL----LRLADVLWSA---NIPLLYVRSYGLYGYIRIQLKE 158 (425)
T ss_pred CEEEEEecccchhhhhHHHHhc--CCCEEEECCCCHHHH----HHHHHHHHHc---CCCEEEEecccCEEEEEEEECC
Confidence 5555555544332 233444 789988765433222 2245677664 7899999999999999988773
No 108
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=45.06 E-value=82 Score=23.02 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=19.7
Q ss_pred hHHHHHHHHHhcCCcEEEEeccCC
Q 030516 105 ARNILCEAVEKHHASILVVGSHGY 128 (176)
Q Consensus 105 ~~~~I~~~a~~~~~DlIV~Gs~g~ 128 (176)
..+.+++.+++.++|+|++|--..
T Consensus 87 ~~~~i~~~I~~~~pdiv~vglG~P 110 (171)
T cd06533 87 EEEEIIERINASGADILFVGLGAP 110 (171)
T ss_pred hHHHHHHHHHHcCCCEEEEECCCC
Confidence 455689999999999999986554
No 109
>TIGR00930 2a30 K-Cl cotransporter.
Probab=44.60 E-value=2.9e+02 Score=26.38 Aligned_cols=97 Identities=14% Similarity=0.099 Sum_probs=56.0
Q ss_pred CEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHH
Q 030516 7 QTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKE 86 (176)
Q Consensus 7 ~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 86 (176)
-++||.+.........++++..+.+. ..-.++.|+.+.+.. +..++.+...++...
T Consensus 576 PqiLvl~~~p~~~~~Ll~f~~~l~~~------~gl~i~~~v~~~~~~------------------~~~~~~~~~~~~~~~ 631 (953)
T TIGR00930 576 PQCLVLTGPPVCRPALLDFASQFTKG------KGLMICGSVIQGPRL------------------ECVKEAQAAEAKIQT 631 (953)
T ss_pred CeEEEEeCCCcCcHHHHHHHHHhccC------CcEEEEEEEecCchh------------------hhHHHHHHHHHHHHH
Confidence 36899998777788999999998865 347778888754321 111122222233334
Q ss_pred HhhhcCCcceEEEEEcCChHHHHHHHHHhc-----CCcEEEEeccC
Q 030516 87 ICSSKSVHDFVVEVVEGDARNILCEAVEKH-----HASILVVGSHG 127 (176)
Q Consensus 87 ~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~-----~~DlIV~Gs~g 127 (176)
+++.......-..+...+..+.+-...+-. .+..|+||-..
T Consensus 632 ~~~~~~~~~f~~~~~~~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~ 677 (953)
T TIGR00930 632 WLEKNKVKAFYAVVVADDLREGVRHLIQASGLGRMKPNTLVMGYKK 677 (953)
T ss_pred HHHHhCCCeEEEEecCCCHHHHHHHHHHhcCCCCCCCCEEEecCcc
Confidence 444443211222233445666666666644 47788888654
No 110
>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=44.40 E-value=49 Score=23.10 Aligned_cols=42 Identities=19% Similarity=0.205 Sum_probs=32.9
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCC
Q 030516 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSP 51 (176)
Q Consensus 5 ~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~ 51 (176)
...+|+|+-|....+....+.++.-... .|.+|..+...+.|
T Consensus 39 ~~~~VvVg~D~R~~s~~~~~~~~~~l~~-----~G~~V~~~g~~~tP 80 (137)
T PF02878_consen 39 NGSRVVVGRDTRPSSPMLAKALAAGLRA-----NGVDVIDIGLVPTP 80 (137)
T ss_dssp TSSEEEEEE-SSTTHHHHHHHHHHHHHH-----TTEEEEEEEEB-HH
T ss_pred CCCeEEEEEcccCCHHHHHHHHHHHHhh-----cccccccccccCcH
Confidence 3578999999999999999998887777 37899888865544
No 111
>PRK00509 argininosuccinate synthase; Provisional
Probab=43.95 E-value=2e+02 Score=24.41 Aligned_cols=36 Identities=8% Similarity=0.317 Sum_probs=27.9
Q ss_pred CCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEec
Q 030516 6 TQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (176)
Q Consensus 6 ~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~ 49 (176)
..+|+|++++.-+|.-++.++.+.. |.+|+.+|+-.
T Consensus 2 ~~kVvva~SGGlDSsvla~~l~e~l--------G~eViavt~d~ 37 (399)
T PRK00509 2 KKKVVLAYSGGLDTSVIIKWLKETY--------GCEVIAFTADV 37 (399)
T ss_pred CCeEEEEEcCCHHHHHHHHHHHHhh--------CCeEEEEEEec
Confidence 3699999999999998888875531 34788888854
No 112
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=43.89 E-value=46 Score=24.78 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=27.1
Q ss_pred EEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEE
Q 030516 8 TMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIV 45 (176)
Q Consensus 8 ~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lv 45 (176)
+|++++.+|..+-++.+.+..|.+. |.+|.++
T Consensus 1 ~illgvtGsiaa~ka~~lir~L~~~------g~~V~vv 32 (181)
T TIGR00421 1 RIVVAMTGASGVIYGIRLLEVLKEA------GVEVHLV 32 (181)
T ss_pred CEEEEEECHHHHHHHHHHHHHHHHC------CCEEEEE
Confidence 5899999999999999999888776 6676665
No 113
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=43.40 E-value=1.1e+02 Score=23.89 Aligned_cols=32 Identities=13% Similarity=0.209 Sum_probs=24.6
Q ss_pred CCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCC
Q 030516 15 DSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPS 52 (176)
Q Consensus 15 ~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~ 52 (176)
+...+..++-.|..++.+ |.+|.++-.-|..+
T Consensus 12 GaGKTT~~~~LAs~la~~------G~~V~lIDaDpn~p 43 (231)
T PF07015_consen 12 GAGKTTAAMALASELAAR------GARVALIDADPNQP 43 (231)
T ss_pred CCcHHHHHHHHHHHHHHC------CCeEEEEeCCCCCc
Confidence 445667788888888887 78999998866654
No 114
>PLN02895 phosphoacetylglucosamine mutase
Probab=42.99 E-value=2.2e+02 Score=25.41 Aligned_cols=136 Identities=14% Similarity=0.028 Sum_probs=78.2
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHH
Q 030516 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEA 84 (176)
Q Consensus 5 ~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (176)
..-+|+|+.|....+....++...-... .|++++-+-..++|...+........ .+..++...+.....+.++
T Consensus 126 ~~~~V~vG~DtR~Ss~~l~~a~~~gl~~-----~G~~v~d~G~~tTP~l~~~v~~~n~~--~~~~e~~Y~~~l~~~f~~l 198 (562)
T PLN02895 126 PPAEVLLGRDTRPSGPALLAAALKGVRA-----IGARAVDMGILTTPQLHWMVRAANKG--MKATESDYFEQLSSSFRAL 198 (562)
T ss_pred cCCEEEEEecCCCCHHHHHHHHHHHHHH-----CCCCEEEeCcCCcHHHHHHHHhcCCC--CCCcHHHHHHHHHHHHHHH
Confidence 3468999999999999888888876666 36788888777776543211100000 0111233334434444444
Q ss_pred HHHhhhcCC-----cceEEEEEcCChHHHHHHHHHhcCCcEE-EEeccCCcccchhc--ccccchhhhheeeccc
Q 030516 85 KEICSSKSV-----HDFVVEVVEGDARNILCEAVEKHHASIL-VVGSHGYGAIKRYK--STISCFIWYLIFSRVE 151 (176)
Q Consensus 85 ~~~~~~~~~-----~~v~~~v~~G~~~~~I~~~a~~~~~DlI-V~Gs~g~~~l~~~l--~gvs~~~~~~~~~~~~ 151 (176)
.......+. .++.+....|-.+..+.+..+..++..+ ++.....+.. .+ .-.++|+..+. ++|
T Consensus 199 ~~~~~~~~~~~~~~~kvvVDcANGvg~~~~~~l~~~Lg~~~i~~iN~~~dG~~--~lN~~cGad~v~~lq--~vp 269 (562)
T PLN02895 199 LDLIPNGSGDDRADDKLVVDGANGVGAEKLETLKKALGGLDLEVRNSGKEGEG--VLNEGVGADFVQKEK--VPP 269 (562)
T ss_pred HhcCCCccccccCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEeecCCCCCC--CCCCCCccCcHHHHH--hhh
Confidence 333322211 1244445567778888888888888877 7776643332 22 12256777776 444
No 115
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=42.90 E-value=36 Score=27.70 Aligned_cols=49 Identities=14% Similarity=0.085 Sum_probs=30.8
Q ss_pred ChHHHHHHHHHhcCCcEEEEeccCC--cccchhcccccchhhhheeecccccccccc
Q 030516 104 DARNILCEAVEKHHASILVVGSHGY--GAIKRYKSTISCFIWYLIFSRVELGMVNCF 158 (176)
Q Consensus 104 ~~~~~I~~~a~~~~~DlIV~Gs~g~--~~l~~~l~gvs~~~~~~~~~~~~~~~~~~~ 158 (176)
.+.+..+++.+ ++|+||+|-.+. |-..- +.+....+.+ ++.|+..|-||
T Consensus 174 ~a~p~vl~AI~--~AD~IiiGPgnp~TSI~P~--L~v~gi~eAL--~~a~vV~Vsp~ 224 (303)
T PRK13606 174 KPAPGVLEAIE--EADAVIIGPSNPVTSIGPI--LAVPGIREAL--TEAPVVAVSPI 224 (303)
T ss_pred CCCHHHHHHHH--hCCEEEECCCccHHhhchh--ccchhHHHHH--hCCCEEEEcCC
Confidence 37888899998 999999997765 22222 2333433444 66666644443
No 116
>PRK05370 argininosuccinate synthase; Validated
Probab=42.14 E-value=1.9e+02 Score=24.94 Aligned_cols=119 Identities=10% Similarity=-0.060 Sum_probs=60.4
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCC-----CccCCccchhHHHHHHHHH
Q 030516 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGP-----GAVEVLPHVDSDFKKIAAR 79 (176)
Q Consensus 5 ~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 79 (176)
..++|++++++.-++.-++.|.... +.+|+.+++---++........ ........+.+...+-+++
T Consensus 10 ~~~KVvLAYSGGLDTSv~l~wL~e~---------~~eVia~~aDvGQ~~~ed~~~i~~kA~~~GA~~~~viDlr~eF~e~ 80 (447)
T PRK05370 10 VGQRVGIAFSGGLDTSAALLWMRQK---------GAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRAQLVAE 80 (447)
T ss_pred CCCEEEEEecCCchHHHHHHHHHhc---------CCeEEEEEEECCCCCccchHHHHHHHHHhCCCEEEEeccHHHHHHH
Confidence 5689999999998888888887543 4588888874222100000000 0000000011111222222
Q ss_pred HHHHHHHHhhh----cCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcccc
Q 030516 80 VVEEAKEICSS----KSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIK 132 (176)
Q Consensus 80 ~l~~~~~~~~~----~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~ 132 (176)
.+...+....- .+.-...+.+..--.++.+++.|++.+++.|.=|+.|+|.-+
T Consensus 81 ~i~aI~anA~Y~~~~e~~Y~l~t~LaRplia~~lv~~A~~~ga~aIAHG~TGKGNDQ 137 (447)
T PRK05370 81 GIAAIQCGAFHISTGGVTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDI 137 (447)
T ss_pred HHHHHHcCCccccccCccccCCCcchHHHHHHHHHHHHHHhCCcEEEEcCCCCCCch
Confidence 23111111100 000000011111225899999999999999999999886554
No 117
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=42.10 E-value=1e+02 Score=20.48 Aligned_cols=54 Identities=20% Similarity=0.299 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhhhcCCcceEEEEEc-----------CC-hHHHHHHHHHhcCCcEEEEeccCCcccc
Q 030516 77 AARVVEEAKEICSSKSVHDFVVEVVE-----------GD-ARNILCEAVEKHHASILVVGSHGYGAIK 132 (176)
Q Consensus 77 ~~~~l~~~~~~~~~~~~~~v~~~v~~-----------G~-~~~~I~~~a~~~~~DlIV~Gs~g~~~l~ 132 (176)
.+..++++.+++...+. ++...+.. |. -.+.|.+.++++++|+||... ..++.+
T Consensus 6 ~~~~l~El~~L~~t~g~-~vv~~~~q~~~~~~p~~~iG~GK~eei~~~~~~~~~d~vvfd~-~Lsp~Q 71 (95)
T PF13167_consen 6 FEESLEELEELAETAGY-EVVGTVVQKRRKPDPKTYIGSGKVEEIKELIEELDADLVVFDN-ELSPSQ 71 (95)
T ss_pred HHHHHHHHHHHHHHCCC-eEEEEEEecCCCCCcceeechhHHHHHHHHHhhcCCCEEEECC-CCCHHH
Confidence 34567777777777653 23322221 33 478899999999999999985 354443
No 118
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=41.74 E-value=1.3e+02 Score=21.59 Aligned_cols=83 Identities=19% Similarity=0.310 Sum_probs=43.5
Q ss_pred HHHHHHHHHhhhcCCcceEEEEEcCChHHHHHHHHHhc--CCcEEEEeccCCc----ccchhccc---------------
Q 030516 79 RVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKH--HASILVVGSHGYG----AIKRYKST--------------- 137 (176)
Q Consensus 79 ~~l~~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~--~~DlIV~Gs~g~~----~l~~~l~g--------------- 137 (176)
+..+..++.+.+.+ ++....+.+-..+|++...+. .+|-||+-.-+.+ ++..-+..
T Consensus 29 ~i~~~~~~~a~~~g---~~v~~~QSN~EGelid~I~~a~~~~dgiIINpga~thtS~Ai~DAl~~~~~P~vEVHiSNi~~ 105 (140)
T PF01220_consen 29 DIEQKCKETAAELG---VEVEFFQSNHEGELIDWIHEARDDVDGIIINPGAYTHTSIAIRDALKAISIPVVEVHISNIHA 105 (140)
T ss_dssp HHHHHHHHHHHHTT---EEEEEEE-SSHHHHHHHHHHHTCTTSEEEEE-GGGGHT-HHHHHHHHCCTS-EEEEESS-GGG
T ss_pred HHHHHHHHHHHHCC---CeEEEEecCCHHHHHHHHHHHHhhCCEEEEccchhccccHHHHHHHHcCCCCEEEEEcCCccc
Confidence 34444445555555 344444433334444444333 5999999755442 22222211
Q ss_pred ccchhhhheeeccccccccccCcccce
Q 030516 138 ISCFIWYLIFSRVELGMVNCFGYYSYL 164 (176)
Q Consensus 138 vs~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (176)
-.+|-....++.+-..+|--||..+|.
T Consensus 106 RE~fR~~S~~s~~~~g~I~G~G~~gY~ 132 (140)
T PF01220_consen 106 REEFRHHSVISPVAVGVISGFGADGYL 132 (140)
T ss_dssp S-GGGG--SSGGGSSEEEESSTTHHHH
T ss_pred ccccccccccccccEEEEEeCCHHHHH
Confidence 123556677788888888888888885
No 119
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=41.70 E-value=1.4e+02 Score=21.79 Aligned_cols=24 Identities=17% Similarity=0.462 Sum_probs=21.0
Q ss_pred HHHHHHHHHhcCCcEEEEeccCCc
Q 030516 106 RNILCEAVEKHHASILVVGSHGYG 129 (176)
Q Consensus 106 ~~~I~~~a~~~~~DlIV~Gs~g~~ 129 (176)
.+.|.+.+++.++|+|++|....+
T Consensus 80 a~~l~~~i~~~~p~~Vl~g~t~~g 103 (181)
T cd01985 80 AKALAALIKKEKPDLILAGATSIG 103 (181)
T ss_pred HHHHHHHHHHhCCCEEEECCcccc
Confidence 688999999999999999988774
No 120
>cd05469 Transthyretin_like Transthyretin_like. This domain is present in the transthyretin-like protein (TLP) family which includes transthyretin (TTR) and a transthyretin-related protein called 5-hydroxyisourate hydrolase (HIUase). TTR and HIUase are homotetrameric proteins with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits. TTR transports thyroid hormones and retinol in the blood serum of vertebrates while HIUase catalyzes the second step in a three-step ureide pathway. TTRs are highly conserved and found only in vertebrates while the HIUases are found in a wide range of bacterial, plant, fungal, slime mold and vertebrate organisms.
Probab=41.30 E-value=10 Score=26.19 Aligned_cols=13 Identities=23% Similarity=0.391 Sum_probs=11.5
Q ss_pred cccccccccCcccc
Q 030516 150 VELGMVNCFGYYSY 163 (176)
Q Consensus 150 ~~~~~~~~~~~~~~ 163 (176)
+|++ +.+||||.|
T Consensus 98 vPLL-lSP~gYSTY 110 (113)
T cd05469 98 IALL-LSPFSYSTT 110 (113)
T ss_pred eCEE-ecCCeeeee
Confidence 7888 899999988
No 121
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=40.84 E-value=2.3e+02 Score=24.14 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=21.1
Q ss_pred CChHHHHHHHHHhcCCcEEEEeccCCc
Q 030516 103 GDARNILCEAVEKHHASILVVGSHGYG 129 (176)
Q Consensus 103 G~~~~~I~~~a~~~~~DlIV~Gs~g~~ 129 (176)
...+..+++.+++.+.+...+|+.+-.
T Consensus 242 ~~~~~~ll~~a~~~g~~~~wigs~~~~ 268 (458)
T cd06375 242 SEDARELLAAAKRLNASFTWVASDGWG 268 (458)
T ss_pred hHHHHHHHHHHHHcCCcEEEEEecccc
Confidence 346777888999999998888887754
No 122
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=40.71 E-value=34 Score=24.10 Aligned_cols=27 Identities=15% Similarity=0.030 Sum_probs=22.5
Q ss_pred CChHHHHHHHHHhcCCcEEEEeccCCc
Q 030516 103 GDARNILCEAVEKHHASILVVGSHGYG 129 (176)
Q Consensus 103 G~~~~~I~~~a~~~~~DlIV~Gs~g~~ 129 (176)
.-+.+.+++.|+++++|+|.+.+---+
T Consensus 36 ~v~~e~~v~aa~~~~adiVglS~L~t~ 62 (128)
T cd02072 36 LSPQEEFIDAAIETDADAILVSSLYGH 62 (128)
T ss_pred CCCHHHHHHHHHHcCCCEEEEeccccC
Confidence 348999999999999999999874433
No 123
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=40.26 E-value=71 Score=27.43 Aligned_cols=57 Identities=21% Similarity=0.327 Sum_probs=30.8
Q ss_pred EcCC-hHHHHHHHHH----hcCCcEEEEeccCCcccchhcccccchhhhheeeccccccccccC
Q 030516 101 VEGD-ARNILCEAVE----KHHASILVVGSHGYGAIKRYKSTISCFIWYLIFSRVELGMVNCFG 159 (176)
Q Consensus 101 ~~G~-~~~~I~~~a~----~~~~DlIV~Gs~g~~~l~~~l~gvs~~~~~~~~~~~~~~~~~~~~ 159 (176)
+.|+ .+..|++..+ ..++|+||+|+-|-+ +..++ ..++-.........++|+|-+-|
T Consensus 172 VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGS-iEDLW-~FNdE~vaRAi~~s~iPvISAVG 233 (440)
T COG1570 172 VQGEGAAEEIVEAIERANQRGDVDVLIVARGGGS-IEDLW-AFNDEIVARAIAASRIPVISAVG 233 (440)
T ss_pred ccCCCcHHHHHHHHHHhhccCCCCEEEEecCcch-HHHHh-ccChHHHHHHHHhCCCCeEeecc
Confidence 3465 5666655544 335999999977765 44443 22343333344444444455544
No 124
>PF09043 Lys-AminoMut_A: D-Lysine 5,6-aminomutase alpha subunit; InterPro: IPR015130 This domain is found in proteins involved in the 1,2 rearrangement of the terminal amino group of DL-lysine and of L-beta-lysine, using adenosylcobalamin (AdoCbl) and pyridoxal-5'-phosphate as cofactors. The structure is predominantly a PLP-binding TIM barrel domain, with several additional alpha-helices and beta-strands at the N and C termini. These helices and strands form an intertwined accessory clamp structure that wraps around the sides of the TIM barrel and extends up toward the Ado ligand of the Cbl cofactor, providing most of the interactions observed between the protein and the Ado ligand of the Cbl, suggesting that its role is mainly in stabilising AdoCbl in the precatalytic resting state. ; PDB: 3KP1_A 3KOW_A 3KOZ_A 3KOY_B 3KOX_A 3KP0_C 1XRS_A.
Probab=40.23 E-value=2.1e+02 Score=24.73 Aligned_cols=53 Identities=17% Similarity=0.168 Sum_probs=29.3
Q ss_pred HHHhhhcCCcceEEEEEcCChHHHHHH--HHHhcCCcEE-EEeccCCcccchhccc
Q 030516 85 KEICSSKSVHDFVVEVVEGDARNILCE--AVEKHHASIL-VVGSHGYGAIKRYKST 137 (176)
Q Consensus 85 ~~~~~~~~~~~v~~~v~~G~~~~~I~~--~a~~~~~DlI-V~Gs~g~~~l~~~l~g 137 (176)
.+.+...+..-+.+.|..|+.-+.|.+ .|.++++|.| |+.+.|.|.+..+.-|
T Consensus 138 ~~~~g~~p~P~iy~iVAtG~iyeDi~qaraAA~~GAD~IaVIRttgQSllDyvp~G 193 (509)
T PF09043_consen 138 IERIGPGPKPVIYVIVATGNIYEDIRQARAAARQGADIIAVIRTTGQSLLDYVPEG 193 (509)
T ss_dssp HHHH--ECSSEEEEEE-SS-HHHHHHHHHHHHHTT-SEEEE-BSTTGGG-SS-B-S
T ss_pred HHhcCCCCCCeEEEEEecCchHHHHHHHHHHHHcCCCEEEEecccchhhhccccCC
Confidence 333333343335567788998888764 6889999988 5567777776665544
No 125
>cd03557 L-arabinose_isomerase L-Arabinose isomerase (AI) catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion into D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=39.91 E-value=1.3e+02 Score=26.15 Aligned_cols=77 Identities=9% Similarity=0.003 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHhhhcCCcceEEEEEc-CChHHHHHHHHHh----cCCcEEEEeccCCcccchhcccccchhhhheeec
Q 030516 75 KIAARVVEEAKEICSSKSVHDFVVEVVE-GDARNILCEAVEK----HHASILVVGSHGYGAIKRYKSTISCFIWYLIFSR 149 (176)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~~~v~~~v~~-G~~~~~I~~~a~~----~~~DlIV~Gs~g~~~l~~~l~gvs~~~~~~~~~~ 149 (176)
++..+.-++..+.+...+...+++.... -+-.+.+.+..++ .++|.||+--+..+.-+-++.+ +.-.+
T Consensus 19 ~~~~~~~~~i~~~l~~~~~~~~~v~~~~~v~~~~~i~~~~~~~~~~~~~dgvi~~m~TFs~a~~~i~~-------~~~l~ 91 (484)
T cd03557 19 KQVAAHSREIVDGLNASGKLPVKIVFKPVLTTPDEILAVCREANADDNCAGVITWMHTFSPAKMWIAG-------LTALQ 91 (484)
T ss_pred HHHHHHHHHHHHHhcccCCCCeEEEEccccCCHHHHHHHHHHccccCCccEEEEccCCCchHHHHHHH-------HHHcC
Confidence 3334444444445444332334433222 2234555566665 4599999999988877666544 33348
Q ss_pred ccccccccc
Q 030516 150 VELGMVNCF 158 (176)
Q Consensus 150 ~~~~~~~~~ 158 (176)
+||++.+..
T Consensus 92 ~PvL~~~~q 100 (484)
T cd03557 92 KPLLHLHTQ 100 (484)
T ss_pred CCEEEEccC
Confidence 899988776
No 126
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=39.90 E-value=1.1e+02 Score=20.41 Aligned_cols=26 Identities=12% Similarity=0.040 Sum_probs=22.1
Q ss_pred CChHHHHHHHHHhcCCcEEEEeccCC
Q 030516 103 GDARNILCEAVEKHHASILVVGSHGY 128 (176)
Q Consensus 103 G~~~~~I~~~a~~~~~DlIV~Gs~g~ 128 (176)
..+.+.+++.+.+.++|+|++.....
T Consensus 36 ~~~~~~l~~~~~~~~pdvV~iS~~~~ 61 (119)
T cd02067 36 DVPPEEIVEAAKEEDADAIGLSGLLT 61 (119)
T ss_pred CCCHHHHHHHHHHcCCCEEEEecccc
Confidence 44889999999999999999987643
No 127
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=39.79 E-value=95 Score=21.92 Aligned_cols=27 Identities=15% Similarity=0.044 Sum_probs=23.1
Q ss_pred CChHHHHHHHHHhcCCcEEEEeccCCc
Q 030516 103 GDARNILCEAVEKHHASILVVGSHGYG 129 (176)
Q Consensus 103 G~~~~~I~~~a~~~~~DlIV~Gs~g~~ 129 (176)
.-|.+.+++.|+++++|+|.+......
T Consensus 40 ~vp~e~i~~~a~~~~~d~V~lS~~~~~ 66 (137)
T PRK02261 40 MTSQEEFIDAAIETDADAILVSSLYGH 66 (137)
T ss_pred CCCHHHHHHHHHHcCCCEEEEcCcccc
Confidence 459999999999999999999865543
No 128
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=39.66 E-value=60 Score=24.37 Aligned_cols=32 Identities=13% Similarity=0.059 Sum_probs=25.5
Q ss_pred cCChHHHHHHHHHhcCCcEEEEeccCCcccch
Q 030516 102 EGDARNILCEAVEKHHASILVVGSHGYGAIKR 133 (176)
Q Consensus 102 ~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~ 133 (176)
..-|.+.+++.++++++|+|.+..........
T Consensus 120 ~~vp~e~~v~~~~~~~pd~v~lS~~~~~~~~~ 151 (197)
T TIGR02370 120 RDVPIDTVVEKVKKEKPLMLTGSALMTTTMYG 151 (197)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEccccccCHHH
Confidence 34499999999999999999999765544443
No 129
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=39.49 E-value=1.1e+02 Score=20.24 Aligned_cols=44 Identities=9% Similarity=0.171 Sum_probs=27.4
Q ss_pred HHHhhhcCCcceEEEEEcCC-hHHHHHHHHHhcCCcEEEEeccCCccc
Q 030516 85 KEICSSKSVHDFVVEVVEGD-ARNILCEAVEKHHASILVVGSHGYGAI 131 (176)
Q Consensus 85 ~~~~~~~~~~~v~~~v~~G~-~~~~I~~~a~~~~~DlIV~Gs~g~~~l 131 (176)
...+++.+ +++.....+ +.+.+.+.+++.++|+|.++.......
T Consensus 21 a~~l~~~G---~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~ 65 (121)
T PF02310_consen 21 AAYLRKAG---HEVDILDANVPPEELVEALRAERPDVVGISVSMTPNL 65 (121)
T ss_dssp HHHHHHTT---BEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSSTHH
T ss_pred HHHHHHCC---CeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcCcH
Confidence 34444444 344444433 568899999999999999987544333
No 130
>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis.
Probab=39.33 E-value=43 Score=27.25 Aligned_cols=50 Identities=14% Similarity=0.065 Sum_probs=32.9
Q ss_pred ChHHHHHHHHHhcCCcEEEEeccCC--cccchhcccccchhhhheeeccccccccc
Q 030516 104 DARNILCEAVEKHHASILVVGSHGY--GAIKRYKSTISCFIWYLIFSRVELGMVNC 157 (176)
Q Consensus 104 ~~~~~I~~~a~~~~~DlIV~Gs~g~--~~l~~~l~gvs~~~~~~~~~~~~~~~~~~ 157 (176)
.|.+..+++.+ ++|+||+|-.+. |-+.- +.+....+.+.-++.|+..|-|
T Consensus 172 ~~~p~vl~AI~--~AD~IVlGPgsp~TSI~P~--LlVpgI~eAL~~s~A~vV~Vsp 223 (303)
T cd07186 172 RPAPEVLEAIE--DADLVIIGPSNPVTSIGPI--LALPGIREALRDKKAPVVAVSP 223 (303)
T ss_pred CCCHHHHHHHH--hCCEEEECCCccHHHhhhh--ccchhHHHHHHhCCCCEEEEcC
Confidence 37888999999 999999997765 22232 2344555566666666655544
No 131
>COG2351 Transthyretin-like protein [General function prediction only]
Probab=39.13 E-value=12 Score=26.08 Aligned_cols=14 Identities=36% Similarity=0.705 Sum_probs=11.8
Q ss_pred ccccccccccCcccc
Q 030516 149 RVELGMVNCFGYYSY 163 (176)
Q Consensus 149 ~~~~~~~~~~~~~~~ 163 (176)
-||++ +.++|||.|
T Consensus 108 HVPLL-lSPygYSTY 121 (124)
T COG2351 108 HVPLL-LSPYGYSTY 121 (124)
T ss_pred eeeeE-ecCccccee
Confidence 47888 789999988
No 132
>PRK04527 argininosuccinate synthase; Provisional
Probab=38.79 E-value=2.5e+02 Score=23.92 Aligned_cols=35 Identities=9% Similarity=0.321 Sum_probs=27.1
Q ss_pred CCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEec
Q 030516 6 TQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (176)
Q Consensus 6 ~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~ 49 (176)
.++++|++.+.-+|.-++.++.. . |.+|+.+++-.
T Consensus 2 ~~kVvVA~SGGvDSSvla~~l~e---~------G~~Viavt~d~ 36 (400)
T PRK04527 2 SKDIVLAFSGGLDTSFCIPYLQE---R------GYAVHTVFADT 36 (400)
T ss_pred CCcEEEEEcCChHHHHHHHHHHH---c------CCcEEEEEEEe
Confidence 37899999999999888888654 2 34788888754
No 133
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=38.32 E-value=32 Score=24.16 Aligned_cols=20 Identities=20% Similarity=0.282 Sum_probs=17.8
Q ss_pred hHHHHHHHHHhcCCcEEEEe
Q 030516 105 ARNILCEAVEKHHASILVVG 124 (176)
Q Consensus 105 ~~~~I~~~a~~~~~DlIV~G 124 (176)
..+.|.+.+++++++.||+|
T Consensus 36 ~~~~l~~~i~~~~~~~iVvG 55 (130)
T TIGR00250 36 DWSRIEELLKEWTPDKIVVG 55 (130)
T ss_pred HHHHHHHHHHHcCCCEEEEe
Confidence 57889999999999999999
No 134
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=38.03 E-value=31 Score=29.38 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=21.4
Q ss_pred ChHHHHHHHHHhcCCcEEEEeccCC
Q 030516 104 DARNILCEAVEKHHASILVVGSHGY 128 (176)
Q Consensus 104 ~~~~~I~~~a~~~~~DlIV~Gs~g~ 128 (176)
+-.+.|+++|+++++||+|+|.-..
T Consensus 50 ~~~~~lv~fA~~~~idl~vVGPE~p 74 (428)
T COG0151 50 TDHEALVAFAKEKNVDLVVVGPEAP 74 (428)
T ss_pred cCHHHHHHHHHHcCCCEEEECCcHH
Confidence 3478899999999999999997654
No 135
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=37.52 E-value=2.2e+02 Score=23.10 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=26.3
Q ss_pred CEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEec
Q 030516 7 QTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (176)
Q Consensus 7 ~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~ 49 (176)
++++|++++.-+|.-++..+.+.. |.+++.+|+-.
T Consensus 17 ~kVvValSGGVDSsvla~ll~~~~--------G~~v~av~vd~ 51 (311)
T TIGR00884 17 AKVIIALSGGVDSSVAAVLAHRAI--------GDRLTCVFVDH 51 (311)
T ss_pred CcEEEEecCChHHHHHHHHHHHHh--------CCCEEEEEEeC
Confidence 689999999999987776664432 23789998843
No 136
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=37.48 E-value=2.2e+02 Score=22.99 Aligned_cols=34 Identities=15% Similarity=0.117 Sum_probs=25.2
Q ss_pred EEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEec
Q 030516 8 TMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (176)
Q Consensus 8 ~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~ 49 (176)
+++|++.+.-+|.-++..+.+.. |.+++.+|+-.
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~l--------G~~v~aV~vd~ 34 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKAI--------GDRLTCVFVDN 34 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHHh--------CCcEEEEEecC
Confidence 58999999999988877765531 23788998843
No 137
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=37.07 E-value=1.4e+02 Score=24.17 Aligned_cols=51 Identities=12% Similarity=0.135 Sum_probs=29.8
Q ss_pred CCcEEEEeccCCcccchhc----ccccchhhhheeec----cccccccccCcccceeeee
Q 030516 117 HASILVVGSHGYGAIKRYK----STISCFIWYLIFSR----VELGMVNCFGYYSYLSIIK 168 (176)
Q Consensus 117 ~~DlIV~Gs~g~~~l~~~l----~gvs~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 168 (176)
++|+|+ |.|.+..+.... .|....-.+..+.+ .+++++.+.+|+.|+.-+.
T Consensus 232 gIDvIi-gGHsH~~l~~~~~~~~~~~~~~~~yp~~~~~~~g~~~~ivq~g~~~~~vG~l~ 290 (313)
T cd08162 232 GVDVII-AGGSNTLLADETDRLRPGDTAAGDYPLVTTDADGNPVLIVNTDGNYKYVGRLV 290 (313)
T ss_pred CCCEEE-eCCCCccCcCCCccccCCCCcCCCCCEEEeCCCCCEEEEEEcChhhheeeEEE
Confidence 899887 666666654321 01000112233332 4688999999999987543
No 138
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=36.99 E-value=2.5e+02 Score=23.43 Aligned_cols=35 Identities=20% Similarity=0.349 Sum_probs=26.6
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEe
Q 030516 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHAR 48 (176)
Q Consensus 5 ~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~ 48 (176)
..++|+|++++.-+|.-++..+.+ + +.+++.+|..
T Consensus 4 ~~~kVlValSGGVDSsvaa~LL~~---~------G~~V~~v~~~ 38 (360)
T PRK14665 4 KNKRVLLGMSGGTDSSVAAMLLLE---A------GYEVTGVTFR 38 (360)
T ss_pred CCCEEEEEEcCCHHHHHHHHHHHH---c------CCeEEEEEEe
Confidence 457899999999999887766643 2 4578888874
No 139
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=36.75 E-value=1e+02 Score=26.40 Aligned_cols=56 Identities=11% Similarity=0.138 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEec
Q 030516 69 VDSDFKKIAARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGS 125 (176)
Q Consensus 69 ~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs 125 (176)
+.+...+..++.++++.+.++..+. .+.+.-...+..+.|.+.++++++..||.|.
T Consensus 41 ik~~~~~~ld~~l~~~~~~~~~~g~-~v~~a~t~~eA~~~v~~i~~~~~~~~vv~~k 96 (432)
T TIGR00273 41 IKLKVLENLDFYLDQLKENVTQRGG-HVYYAKTAEEARKIIGKVAQEKNGKKVVKSK 96 (432)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHCCC-EEEEECCHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 4455556667777777777777663 2333222244788899999999999999983
No 140
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=35.91 E-value=53 Score=24.44 Aligned_cols=36 Identities=19% Similarity=0.260 Sum_probs=30.3
Q ss_pred CCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEE
Q 030516 6 TQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHA 47 (176)
Q Consensus 6 ~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv 47 (176)
..+-|||.|..+.+..+.+|...+... |..++++.=
T Consensus 35 lDNTLv~wd~~~~tpe~~~W~~e~k~~------gi~v~vvSN 70 (175)
T COG2179 35 LDNTLVPWDNPDATPELRAWLAELKEA------GIKVVVVSN 70 (175)
T ss_pred ccCceecccCCCCCHHHHHHHHHHHhc------CCEEEEEeC
Confidence 346689999999999999999998887 778888753
No 141
>PF00576 Transthyretin: HIUase/Transthyretin family; InterPro: IPR023416 This family includes transthyretin that is a thyroid hormone-binding protein that transports thyroxine from the bloodstream to the brain. However, most of the sequences listed in this family do not bind thyroid hormones. They are actually enzymes of the purine catabolism that catalyse the conversion of 5-hydroxyisourate (HIU) to OHCU [, ]. HIU hydrolysis is the original function of the family and is conserved from bacteria to mammals; transthyretins arose by gene duplications in the vertebrate lineage [, ]. HIUases are distinguished in the alignment from the conserved C-terminal YRGS sequence. Transthyretin (formerly prealbumin) is one of 3 thyroid hormone-binding proteins found in the blood of vertebrates []. It is produced in the liver and circulates in the bloodstream, where it binds retinol and thyroxine (T4) []. It differs from the other 2 hormone-binding proteins (T4-binding globulin and albumin) in 3 distinct ways: (1) the gene is expressed at a high rate in the brain choroid plexus; (2) it is enriched in cerebrospinal fluid; and (3) no genetically caused absence has been observed, suggesting an essential role in brain function, distinct from that played in the bloodstream []. The protein consists of around 130 amino acids, which assemble as a homotetramer that contains an internal channel in which T4 is bound. Within this complex, T4 appears to be transported across the blood-brain barrier, where, in the choroid plexus, the hormone stimulates further synthesis of transthyretin. The protein then diffuses back into the bloodstream, where it binds T4 for transport back to the brain [].; PDB: 1TFP_B 1KGJ_D 1IE4_C 1GKE_C 1KGI_D 2H0J_B 2H0E_B 2H0F_B 1ZD6_A 3DGD_D ....
Probab=35.27 E-value=11 Score=25.95 Aligned_cols=14 Identities=43% Similarity=0.750 Sum_probs=10.8
Q ss_pred ccccccccccCcccc
Q 030516 149 RVELGMVNCFGYYSY 163 (176)
Q Consensus 149 ~~~~~~~~~~~~~~~ 163 (176)
-+|++ +.+||||.|
T Consensus 97 HvPLL-lSP~gYSTY 110 (112)
T PF00576_consen 97 HVPLL-LSPFGYSTY 110 (112)
T ss_dssp EEEEE-EETTEEEEE
T ss_pred EEEEE-ecCceeeEE
Confidence 46777 788888877
No 142
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase. Members of this family, hydroxyisourate hydrolase, represent a distinct clade of transthyretin-related proteins. Bacterial members typically are encoded next to ureidoglycolate hydrolase and often near either xanthine dehydrogenase or xanthine/uracil permease genes and have been demonstrated to have hydroxyisourate hydrolase activity. In eukaryotes, a clade separate from the transthyretins (a family of thyroid-hormone binding proteins) has also been shown to have HIU hydrolase activity in urate catabolizing organisms. Transthyretin, then, would appear to be the recently diverged paralog of the more ancient HIUH family.
Probab=35.23 E-value=14 Score=25.37 Aligned_cols=13 Identities=38% Similarity=0.743 Sum_probs=11.2
Q ss_pred cccccccccCcccc
Q 030516 150 VELGMVNCFGYYSY 163 (176)
Q Consensus 150 ~~~~~~~~~~~~~~ 163 (176)
+|++ +.+|||+.|
T Consensus 97 vPll-lSP~~ySTY 109 (112)
T TIGR02962 97 VPLL-LSPYGYSTY 109 (112)
T ss_pred EeEE-ecCCceecc
Confidence 7888 889999988
No 143
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=34.87 E-value=2.4e+02 Score=22.70 Aligned_cols=26 Identities=12% Similarity=0.089 Sum_probs=21.5
Q ss_pred hHHHHHHHHHhcCCcEEEEeccCCcc
Q 030516 105 ARNILCEAVEKHHASILVVGSHGYGA 130 (176)
Q Consensus 105 ~~~~I~~~a~~~~~DlIV~Gs~g~~~ 130 (176)
....+.+..++.++|++|+..-.+--
T Consensus 157 ~~~~~~~~l~~~~~Dlivlagym~il 182 (289)
T PRK13010 157 QEAQILDLIETSGAELVVLARYMQVL 182 (289)
T ss_pred hHHHHHHHHHHhCCCEEEEehhhhhC
Confidence 45678999999999999999877643
No 144
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=34.87 E-value=2e+02 Score=21.78 Aligned_cols=37 Identities=11% Similarity=0.092 Sum_probs=22.7
Q ss_pred CEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCC
Q 030516 7 QTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPS 52 (176)
Q Consensus 7 ~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~ 52 (176)
.++|+-+.+.-+|.-|. .+..++ |.+|+.+|...++.
T Consensus 4 gk~l~LlSGGiDSpVAa----~lm~kr-----G~~V~~l~f~~~~~ 40 (197)
T PF02568_consen 4 GKALALLSGGIDSPVAA----WLMMKR-----GCEVIALHFDSPPF 40 (197)
T ss_dssp -EEEEE-SSCCHHHHHH----HHHHCB-----T-EEEEEEEE-TTT
T ss_pred ceEEEEecCCccHHHHH----HHHHHC-----CCEEEEEEEECCCC
Confidence 57888888887775443 333443 88999999975443
No 145
>COG1540 Uncharacterized proteins, homologs of lactam utilization protein B [General function prediction only]
Probab=34.42 E-value=2.3e+02 Score=22.34 Aligned_cols=100 Identities=14% Similarity=0.124 Sum_probs=59.1
Q ss_pred CCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHHHhhhcCCc
Q 030516 15 DSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVH 94 (176)
Q Consensus 15 ~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 94 (176)
+.......++.+.++|.+. |.. +.-|.-.+.. .+.+.. ...--.++..+..--++-.+...++..+.
T Consensus 38 fHAGDp~~M~rtV~lA~e~-----gV~-IGAHPgyPDl-----~gFGRr-~m~~~~~e~~a~~lYQiGAL~a~~~a~G~- 104 (252)
T COG1540 38 FHAGDPLTMRRTVRLAKEN-----GVA-IGAHPGYPDL-----VGFGRR-EMALSPEELYAQVLYQIGALQAFARAQGG- 104 (252)
T ss_pred ccCCCHHHHHHHHHHHHHc-----CCe-eccCCCCccc-----cccCcc-ccCCCHHHHHHHHHHHHHHHHHHHHhcCC-
Confidence 3444556788888888883 222 2333321111 111111 11112355566666667777777777663
Q ss_pred ceEEEEEc-C--------C--hHHHHHHHHHhcCCcEEEEeccCC
Q 030516 95 DFVVEVVE-G--------D--ARNILCEAVEKHHASILVVGSHGY 128 (176)
Q Consensus 95 ~v~~~v~~-G--------~--~~~~I~~~a~~~~~DlIV~Gs~g~ 128 (176)
.++. +.. | | .++++++.+...++.|++||-.+.
T Consensus 105 ~~~h-VKpHGALYN~~a~D~~la~av~~av~~~dp~L~l~~Lags 148 (252)
T COG1540 105 VVQH-VKPHGALYNQAAKDRALADAVAEAVAAFDPSLILMGLAGS 148 (252)
T ss_pred eEEE-ecccHHHHHHhhcCHHHHHHHHHHHHHhCCCceEEecCcH
Confidence 2433 433 2 2 589999999999999999998876
No 146
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=34.34 E-value=84 Score=23.56 Aligned_cols=31 Identities=19% Similarity=0.195 Sum_probs=24.8
Q ss_pred cCChHHHHHHHHHhcCCcEEEEeccCCcccc
Q 030516 102 EGDARNILCEAVEKHHASILVVGSHGYGAIK 132 (176)
Q Consensus 102 ~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~ 132 (176)
.+-|.+.+++.++++++|+|.+.........
T Consensus 118 ~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~ 148 (201)
T cd02070 118 RDVPPEEFVEAVKEHKPDILGLSALMTTTMG 148 (201)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEeccccccHH
Confidence 3459999999999999999999875544443
No 147
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=34.06 E-value=2.3e+02 Score=22.09 Aligned_cols=44 Identities=16% Similarity=0.277 Sum_probs=26.7
Q ss_pred HHHHHHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEecc
Q 030516 81 VEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSH 126 (176)
Q Consensus 81 l~~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~ 126 (176)
..++++...+.+ ..+.. -+.|.....-+..+.+-++|.+|+|+.
T Consensus 166 I~~lr~~~~~~~-~~~~I-eVDGGI~~~ti~~l~~aGaD~~V~GSa 209 (228)
T PRK08091 166 VIQVENRLGNRR-VEKLI-SIDGSMTLELASYLKQHQIDWVVSGSA 209 (228)
T ss_pred HHHHHHHHHhcC-CCceE-EEECCCCHHHHHHHHHCCCCEEEEChh
Confidence 334444544443 23444 345555555666777789999999964
No 148
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=33.79 E-value=92 Score=26.27 Aligned_cols=37 Identities=11% Similarity=0.088 Sum_probs=31.4
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEE
Q 030516 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHA 47 (176)
Q Consensus 5 ~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv 47 (176)
..++|+++|.+|-.+.++++.+..|-++ |+++.++-.
T Consensus 3 ~~k~ill~v~gsiaayk~~~l~r~L~~~------ga~v~vvmt 39 (392)
T COG0452 3 EGKRILLGVTGSIAAYKSVELVRLLRRS------GAEVRVVMT 39 (392)
T ss_pred CCceEEEEecCchhhhhHHHHHHHHhhC------CCeeEEEcc
Confidence 3469999999999999999999888887 788887754
No 149
>PRK02929 L-arabinose isomerase; Provisional
Probab=33.78 E-value=1.8e+02 Score=25.55 Aligned_cols=76 Identities=9% Similarity=0.030 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHhhhcCCcceEEEEEc-CChHHHHHHHHHhcC----CcEEEEeccCCcccchhcccccchhhhheeec
Q 030516 75 KIAARVVEEAKEICSSKSVHDFVVEVVE-GDARNILCEAVEKHH----ASILVVGSHGYGAIKRYKSTISCFIWYLIFSR 149 (176)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~~~v~~~v~~-G~~~~~I~~~a~~~~----~DlIV~Gs~g~~~l~~~l~gvs~~~~~~~~~~ 149 (176)
++.++.-+++.+.+...+...+++.-.. -+-.+.|.+..++.+ +|.||+--+..+.-+-++.+ +.-.+
T Consensus 25 ~~~~~~~~~i~~~l~~~~~~~~~vv~~~~v~~~~~i~~~~~~~~~~~~~dgvi~~m~TFs~a~~~i~~-------~~~l~ 97 (499)
T PRK02929 25 RQVAEHAEEIVDGLNASGKLPVKIVLKPVLTTPDEITAVCREANYDDNCAGVITWMHTFSPAKMWIRG-------LSALQ 97 (499)
T ss_pred HHHHHHHHHHHHHhcccCCCCeEEEEcCccCCHHHHHHHHHHccccCCCcEEEEccCCCchHHHHHHH-------HHHcC
Confidence 3334444444445544333334443111 123444445555555 99999999988877766544 33348
Q ss_pred cccccccc
Q 030516 150 VELGMVNC 157 (176)
Q Consensus 150 ~~~~~~~~ 157 (176)
+||++.+.
T Consensus 98 ~PvL~~~~ 105 (499)
T PRK02929 98 KPLLHLHT 105 (499)
T ss_pred CCEEEEec
Confidence 89998877
No 150
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=33.67 E-value=76 Score=22.78 Aligned_cols=79 Identities=19% Similarity=0.271 Sum_probs=42.6
Q ss_pred HHHHHhhhcCCcceEEEEEc--CChHHHHHHHHHhcCCcEEEEeccCCc----ccchhccccc---------------ch
Q 030516 83 EAKEICSSKSVHDFVVEVVE--GDARNILCEAVEKHHASILVVGSHGYG----AIKRYKSTIS---------------CF 141 (176)
Q Consensus 83 ~~~~~~~~~~~~~v~~~v~~--G~~~~~I~~~a~~~~~DlIV~Gs~g~~----~l~~~l~gvs---------------~~ 141 (176)
.+++.+.+.+. ++++.... |+..+.|-+..+ ++|-||+-.-+.+ ++...+.+++ +|
T Consensus 32 ~l~~~a~~~g~-~v~~~QSN~Egelid~I~~a~~--~~dgiIINpga~THtSvAi~DAl~~~~~P~VEVHiSNi~aRE~f 108 (140)
T cd00466 32 LLRELAAELGV-EVEFFQSNHEGELIDWIHEARD--GADGIIINPGAYTHTSIALRDALAAVSIPVIEVHISNIHAREEF 108 (140)
T ss_pred HHHHHHHHcCC-EEEEEeeCcHHHHHHHHHHhhc--cCcEEEEcchHHHHHHHHHHHHHHcCCCCEEEEecCCccccccc
Confidence 33344444453 45554433 445555555433 6899999755443 3333332222 23
Q ss_pred hhhheeeccccccccccCcccce
Q 030516 142 IWYLIFSRVELGMVNCFGYYSYL 164 (176)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~ 164 (176)
-..-.+|.+-+.+|--||..+|.
T Consensus 109 R~~S~is~~~~G~I~G~G~~gY~ 131 (140)
T cd00466 109 RHHSVISPVATGVIAGLGADGYR 131 (140)
T ss_pred ccccccccceeEEEEeCCHHHHH
Confidence 34455666777777777777774
No 151
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=33.14 E-value=2.7e+02 Score=22.70 Aligned_cols=93 Identities=14% Similarity=0.150 Sum_probs=49.8
Q ss_pred EEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHHHh
Q 030516 9 MVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEIC 88 (176)
Q Consensus 9 ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 88 (176)
.+++..++..+..+...|..+... +.+|.++.. +.... . ..+++..+.
T Consensus 118 ~lvGpnGsGKTTt~~kLA~~l~~~------g~~V~Li~~-D~~r~----------------------~---a~eql~~~a 165 (318)
T PRK10416 118 LVVGVNGVGKTTTIGKLAHKYKAQ------GKKVLLAAG-DTFRA----------------------A---AIEQLQVWG 165 (318)
T ss_pred EEECCCCCcHHHHHHHHHHHHHhc------CCeEEEEec-Cccch----------------------h---hHHHHHHHH
Confidence 456666777777777777766654 457777643 21110 0 112222233
Q ss_pred hhcCCcceEEEEEcCChHHH---HHHHHHhcCCcEEEEeccCCcccchh
Q 030516 89 SSKSVHDFVVEVVEGDARNI---LCEAVEKHHASILVVGSHGYGAIKRY 134 (176)
Q Consensus 89 ~~~~~~~v~~~v~~G~~~~~---I~~~a~~~~~DlIV~Gs~g~~~l~~~ 134 (176)
...+. .+...-...+|... .+..+...++|+|++-+.|+......
T Consensus 166 ~~~~i-~~~~~~~~~dpa~~v~~~l~~~~~~~~D~ViIDTaGr~~~~~~ 213 (318)
T PRK10416 166 ERVGV-PVIAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTN 213 (318)
T ss_pred HHcCc-eEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCcCCHH
Confidence 33332 23222222345432 23456678999999999999765433
No 152
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=32.54 E-value=1.8e+02 Score=23.39 Aligned_cols=30 Identities=20% Similarity=0.370 Sum_probs=25.1
Q ss_pred EEEEcCChHHHHHHHHHhcCCcEEEEeccC
Q 030516 98 VEVVEGDARNILCEAVEKHHASILVVGSHG 127 (176)
Q Consensus 98 ~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g 127 (176)
..+.+.+-.+.|.++.+++.+|+||+--|.
T Consensus 134 ~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD 163 (283)
T TIGR02855 134 IHCKEKEMPEKVLDLIEEVRPDILVITGHD 163 (283)
T ss_pred EEecchhchHHHHHHHHHhCCCEEEEeCch
Confidence 455566678899999999999999998776
No 153
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=32.32 E-value=1.4e+02 Score=26.53 Aligned_cols=77 Identities=10% Similarity=0.111 Sum_probs=54.1
Q ss_pred HHHHHHHHhhhcCCcceEEEEEcCC-hHHHHHHHHHhcCCcEEEEeccCCcccchhcccccchhhhheeecccccccccc
Q 030516 80 VVEEAKEICSSKSVHDFVVEVVEGD-ARNILCEAVEKHHASILVVGSHGYGAIKRYKSTISCFIWYLIFSRVELGMVNCF 158 (176)
Q Consensus 80 ~l~~~~~~~~~~~~~~v~~~v~~G~-~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~gvs~~~~~~~~~~~~~~~~~~~ 158 (176)
+...+...+.+.+ ..++..+..+. =+..|++...-..+|-||.- .|-|.+.+.+.|.=+.-..-.|-+.||.||+|-
T Consensus 199 F~~~v~Pll~~A~-i~~evv~T~~~~HArei~rt~dl~kyDgIv~v-sGDGl~hEVlNGLl~R~D~~~~~klPigiiP~G 276 (579)
T KOG1116|consen 199 FKNHVEPLLSEAG-ISFEVVLTTRPNHAREIVRTLDLGKYDGIVCV-SGDGLLHEVLNGLLERPDWEAAVKLPIGIIPCG 276 (579)
T ss_pred HHhhhhhhhhhcC-ceEEEEEecCccHHHHHHHhhhccccceEEEe-cCCcCHHHhhhccccccchhhHhcCceeEeecC
Confidence 3344445555544 35676666554 57788888877788887765 467788888877666666888999999999874
No 154
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=32.06 E-value=73 Score=23.04 Aligned_cols=77 Identities=22% Similarity=0.312 Sum_probs=41.4
Q ss_pred HHHhhhcCCcceEEEEEc--CChHHHHHHHHHhcCCcEEEEeccCCc----ccchhccccc---------------chhh
Q 030516 85 KEICSSKSVHDFVVEVVE--GDARNILCEAVEKHHASILVVGSHGYG----AIKRYKSTIS---------------CFIW 143 (176)
Q Consensus 85 ~~~~~~~~~~~v~~~v~~--G~~~~~I~~~a~~~~~DlIV~Gs~g~~----~l~~~l~gvs---------------~~~~ 143 (176)
++.+.+.+. ++++.... |...+.|-+..+ ++|-||+-.-+.+ ++...+.+++ +|-.
T Consensus 36 ~~~a~~~g~-~v~~~QSN~EGelId~I~~a~~--~~dgiiINpga~THtSiAl~DAl~~~~~P~VEVHiSNi~aRE~fR~ 112 (146)
T PRK05395 36 EEEAAELGV-ELEFFQSNHEGELIDRIHEARD--GADGIIINPGAYTHTSVALRDALAAVSIPVIEVHLSNIHAREEFRH 112 (146)
T ss_pred HHHHHHcCC-EEEEEeeCcHHHHHHHHHhccc--CCcEEEECchHHHHHHHHHHHHHHcCCCCEEEEecCCccccccccc
Confidence 344444452 45554433 444454444433 6899999765543 3333332221 2334
Q ss_pred hheeeccccccccccCcccce
Q 030516 144 YLIFSRVELGMVNCFGYYSYL 164 (176)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~ 164 (176)
...+|.+-..+|--||..+|.
T Consensus 113 ~S~is~~a~G~I~G~G~~gY~ 133 (146)
T PRK05395 113 HSYISDVAVGVICGFGADGYL 133 (146)
T ss_pred cccccccceEEEeeCCHHhHH
Confidence 455667777777777777774
No 155
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=31.58 E-value=64 Score=23.34 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=21.7
Q ss_pred hHHHHHHHHHhcCCcEEEEeccCCcc
Q 030516 105 ARNILCEAVEKHHASILVVGSHGYGA 130 (176)
Q Consensus 105 ~~~~I~~~a~~~~~DlIV~Gs~g~~~ 130 (176)
..++|.+.++++++|+|++|....+.
T Consensus 71 ~a~al~~~i~~~~p~~Vl~~~t~~g~ 96 (168)
T cd01715 71 YAPALVALAKKEKPSHILAGATSFGK 96 (168)
T ss_pred HHHHHHHHHHhcCCCEEEECCCcccc
Confidence 47788999999999999999887643
No 156
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=31.41 E-value=1.9e+02 Score=20.56 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=22.6
Q ss_pred EEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEE
Q 030516 9 MVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHA 47 (176)
Q Consensus 9 ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv 47 (176)
++++..++..+.-+...+..++.. +.++.++..
T Consensus 4 ~~~G~~G~GKTt~~~~la~~~~~~------g~~v~~i~~ 36 (173)
T cd03115 4 LLVGLQGVGKTTTAAKLALYLKKK------GKKVLLVAA 36 (173)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHC------CCcEEEEEc
Confidence 455666777777788888777766 446776653
No 157
>cd05822 TLP_HIUase HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU). HIUase has high sequence similarity with transthyretins and is a member of the transthyretin-like protein (TLP) family. HIUase is distinguished from transthyretins by a conserved signature motif at its C-terminus that forms part of the active site. In HIUase, this motif is YRGS, while transthyretins have a conserved TAVV sequence in the same location. Most HIUases are cytosolic but in plants and slime molds, they are peroxisomal based on the presence of N-terminal periplasmic localization sequences. HIUase forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located betw
Probab=31.20 E-value=18 Score=24.84 Aligned_cols=13 Identities=46% Similarity=0.792 Sum_probs=11.0
Q ss_pred cccccccccCcccc
Q 030516 150 VELGMVNCFGYYSY 163 (176)
Q Consensus 150 ~~~~~~~~~~~~~~ 163 (176)
+|++ +.+|||+.|
T Consensus 97 vPlL-lSP~sYSTY 109 (112)
T cd05822 97 VPLL-LSPFGYSTY 109 (112)
T ss_pred EeEE-ecCCceecc
Confidence 7777 889999888
No 158
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=31.07 E-value=2.7e+02 Score=22.06 Aligned_cols=90 Identities=12% Similarity=0.153 Sum_probs=48.0
Q ss_pred EEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHHHhh
Q 030516 10 VVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICS 89 (176)
Q Consensus 10 LVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 89 (176)
+++..++..+..+...|..++.. +-+|.++.. ++ .. ..+ .+++..+..
T Consensus 77 l~G~~G~GKTTt~akLA~~l~~~------g~~V~li~~-D~--~r--------------------~~a---~~ql~~~~~ 124 (272)
T TIGR00064 77 FVGVNGVGKTTTIAKLANKLKKQ------GKSVLLAAG-DT--FR--------------------AAA---IEQLEEWAK 124 (272)
T ss_pred EECCCCCcHHHHHHHHHHHHHhc------CCEEEEEeC-CC--CC--------------------HHH---HHHHHHHHH
Confidence 44445666677777777777654 457777743 11 10 011 223333443
Q ss_pred hcCCcceEEEEEcCChHHHH---HHHHHhcCCcEEEEeccCCcccc
Q 030516 90 SKSVHDFVVEVVEGDARNIL---CEAVEKHHASILVVGSHGYGAIK 132 (176)
Q Consensus 90 ~~~~~~v~~~v~~G~~~~~I---~~~a~~~~~DlIV~Gs~g~~~l~ 132 (176)
..+. .+...-...+|...+ ++.+...++|+|++-+.|+....
T Consensus 125 ~~~i-~~~~~~~~~dp~~~~~~~l~~~~~~~~D~ViIDT~G~~~~d 169 (272)
T TIGR00064 125 RLGV-DVIKQKEGADPAAVAFDAIQKAKARNIDVVLIDTAGRLQNK 169 (272)
T ss_pred hCCe-EEEeCCCCCCHHHHHHHHHHHHHHCCCCEEEEeCCCCCcch
Confidence 3331 121111123455433 34556678999999999997643
No 159
>PRK14057 epimerase; Provisional
Probab=30.85 E-value=2.7e+02 Score=22.06 Aligned_cols=45 Identities=16% Similarity=0.170 Sum_probs=27.3
Q ss_pred HHHHHHHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEecc
Q 030516 80 VVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSH 126 (176)
Q Consensus 80 ~l~~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~ 126 (176)
.++++++.+.+.+ ..+.. -+.|.....-+..+.+-++|.+|+|+.
T Consensus 179 KI~~lr~~~~~~~-~~~~I-eVDGGI~~~ti~~l~~aGad~~V~GSa 223 (254)
T PRK14057 179 RVAQLLCLLGDKR-EGKII-VIDGSLTQDQLPSLIAQGIDRVVSGSA 223 (254)
T ss_pred HHHHHHHHHHhcC-CCceE-EEECCCCHHHHHHHHHCCCCEEEEChH
Confidence 3344444554444 23444 345655555666777789999999964
No 160
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=30.58 E-value=2.5e+02 Score=21.63 Aligned_cols=44 Identities=16% Similarity=0.239 Sum_probs=26.2
Q ss_pred HHHHHHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEecc
Q 030516 81 VEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSH 126 (176)
Q Consensus 81 l~~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~ 126 (176)
+.++++...+.+ .++.+.+ .|.....-+....+.++|.+|+|+.
T Consensus 158 I~~l~~~~~~~~-~~~~IeV-DGGI~~eti~~l~~aGaDi~V~GSa 201 (223)
T PRK08745 158 LRAIRKKIDALG-KPIRLEI-DGGVKADNIGAIAAAGADTFVAGSA 201 (223)
T ss_pred HHHHHHHHHhcC-CCeeEEE-ECCCCHHHHHHHHHcCCCEEEEChh
Confidence 334444544443 2344444 4545555566667789999999964
No 161
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=30.13 E-value=1.2e+02 Score=22.26 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=24.1
Q ss_pred ceEEEEEcCChHHHHHHHHHhcCCcEEEEecc
Q 030516 95 DFVVEVVEGDARNILCEAVEKHHASILVVGSH 126 (176)
Q Consensus 95 ~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~ 126 (176)
++...+..|-..+.|.+|++ .++|.|.+|+-
T Consensus 127 ~v~ie~SGGI~~~ni~~ya~-~gvD~isvg~~ 157 (169)
T PF01729_consen 127 RVKIEASGGITLENIAEYAK-TGVDVISVGSL 157 (169)
T ss_dssp TSEEEEESSSSTTTHHHHHH-TT-SEEEECHH
T ss_pred cEEEEEECCCCHHHHHHHHh-cCCCEEEcChh
Confidence 37777777778888999995 67999999974
No 162
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=30.10 E-value=46 Score=29.43 Aligned_cols=21 Identities=10% Similarity=0.332 Sum_probs=19.4
Q ss_pred hHHHHHHHHHhcCCcEEEEec
Q 030516 105 ARNILCEAVEKHHASILVVGS 125 (176)
Q Consensus 105 ~~~~I~~~a~~~~~DlIV~Gs 125 (176)
..++|++.|+++++|+|++|-
T Consensus 40 tFeEIl~iA~e~~VDmiLlGG 60 (646)
T KOG2310|consen 40 TFEEILEIAQENDVDMILLGG 60 (646)
T ss_pred HHHHHHHHHHhcCCcEEEecC
Confidence 478999999999999999994
No 163
>TIGR00646 MG010 DNA primase-related protein. The DNA primase DnaG of E. coli and its apparent orthologs in other eubacterial species are approximately 600 residues in length. Within this set, a conspicuous outlier in percent identity, as seen in a UPGMA difference tree, is the branch containing the Mycoplasmas. This lineage is also unique in containing the small, DNA primase-related protein modelled by this alignment, which is homologous to the central third of DNA primase. Several small regions of sequence similarity specifically to Mycoplasma sequences rather than to all DnaG homologs suggests that the divergence of this protein from DnaG post-dated the separation of bacterial lineages. The function of this DNA primase-related protein is unknown.
Probab=30.05 E-value=1.6e+02 Score=22.78 Aligned_cols=35 Identities=9% Similarity=0.065 Sum_probs=28.4
Q ss_pred CCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEE
Q 030516 6 TQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIV 45 (176)
Q Consensus 6 ~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lv 45 (176)
.++|.+++|.+...+.|...+..+.... |..+.++
T Consensus 154 ~~~Iil~~D~D~AG~~Aa~r~~~~L~~~-----G~~v~vv 188 (218)
T TIGR00646 154 IEKIFICFDNDFAGKNAAANLEEILKKA-----GFITKVI 188 (218)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHHHHHC-----CCeEEEE
Confidence 4789999999999999999999888762 5565554
No 164
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=30.04 E-value=1.7e+02 Score=21.91 Aligned_cols=66 Identities=9% Similarity=0.078 Sum_probs=41.3
Q ss_pred eEEEEEcCC-hHHHHHHHHHhcCCcEEEEeccCCcccchhcccccchhhhheeeccccccccccCcccceeeeeee
Q 030516 96 FVVEVVEGD-ARNILCEAVEKHHASILVVGSHGYGAIKRYKSTISCFIWYLIFSRVELGMVNCFGYYSYLSIIKRT 170 (176)
Q Consensus 96 v~~~v~~G~-~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~gvs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (176)
+++...... ..+.+.++.+ ++|+||..+-... .+.+ ++++|.+ .+.|+....+.|.+.+..+|.|.
T Consensus 91 v~i~~~~~~i~~~~~~~~~~--~~D~Vi~~~d~~~-~r~~---l~~~~~~---~~ip~i~~~~~g~~G~~~~~~p~ 157 (202)
T TIGR02356 91 IQVTALKERVTAENLELLIN--NVDLVLDCTDNFA-TRYL---INDACVA---LGTPLISAAVVGFGGQLMVFDPG 157 (202)
T ss_pred CEEEEehhcCCHHHHHHHHh--CCCEEEECCCCHH-HHHH---HHHHHHH---cCCCEEEEEeccCeEEEEEEeCC
Confidence 444444433 2345556666 8999888765432 2222 3455555 35788777888999998888764
No 165
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=30.00 E-value=3.5e+02 Score=23.02 Aligned_cols=29 Identities=28% Similarity=0.297 Sum_probs=25.7
Q ss_pred hHHHHHHHHHhcCCcEEEEeccCCcccch
Q 030516 105 ARNILCEAVEKHHASILVVGSHGYGAIKR 133 (176)
Q Consensus 105 ~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~ 133 (176)
.++.+++.|++.+++.|.=|+.|+|.=+-
T Consensus 100 Iak~lVe~A~k~ga~avaHGcTGKGNDQv 128 (403)
T COG0137 100 IAKKLVEAAKKEGADAVAHGCTGKGNDQV 128 (403)
T ss_pred HHHHHHHHHHHcCCCEEEecCCCCCCcee
Confidence 48999999999999999999999976543
No 166
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=29.97 E-value=3.3e+02 Score=22.75 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=19.5
Q ss_pred HHHHHHHHhcCCcEEEEeccCC
Q 030516 107 NILCEAVEKHHASILVVGSHGY 128 (176)
Q Consensus 107 ~~I~~~a~~~~~DlIV~Gs~g~ 128 (176)
..+.++|++.++|.|+-|.+.+
T Consensus 98 ~~L~~~A~~~G~~~IATGHyar 119 (362)
T PRK14664 98 RMLIEWADKLGCAWIATGHYSR 119 (362)
T ss_pred HHHHHHHHHcCCCEEEECCccc
Confidence 4689999999999999998875
No 167
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=29.80 E-value=52 Score=27.37 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHhhhcCCcceEEEEEcCC
Q 030516 74 KKIAARVVEEAKEICSSKSVHDFVVEVVEGD 104 (176)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~~~v~~~v~~G~ 104 (176)
.+...+.+.++.+.+.+.. ++..++-||
T Consensus 22 ~~d~~~~f~~~l~~a~~~~---vD~vliAGD 49 (390)
T COG0420 22 LEDQKKAFDELLEIAKEEK---VDFVLIAGD 49 (390)
T ss_pred hHHHHHHHHHHHHHHHHcc---CCEEEEccc
Confidence 3445555666655655542 466676664
No 168
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=29.66 E-value=61 Score=23.82 Aligned_cols=95 Identities=25% Similarity=0.234 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCC----ccc------chhc--ccccchh
Q 030516 75 KIAARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGY----GAI------KRYK--STISCFI 142 (176)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~----~~l------~~~l--~gvs~~~ 142 (176)
+..++.++-+.+.+.+.+...+.+.-..|..+..+++.++.. ..+|++..|.- +.+ ++.| .|..=+.
T Consensus 10 eNT~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~-lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~~ 88 (186)
T COG1751 10 ENTDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGD-LKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVLT 88 (186)
T ss_pred cchHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccC-ceEEEEEeecccccCCceecCHHHHHHHHHcCceeee
Confidence 344556666677777777655556666788888889988854 55565544321 111 1111 2433344
Q ss_pred hhheeeccccccccccCcccceeeeeee
Q 030516 143 WYLIFSRVELGMVNCFGYYSYLSIIKRT 170 (176)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (176)
..-++|-++=.+.+-||-|+=+.||-.|
T Consensus 89 ~sHalSg~eRsis~kfGG~~p~eiiAet 116 (186)
T COG1751 89 QSHALSGVERSISRKFGGYSPLEIIAET 116 (186)
T ss_pred ehhhhhcchhhhhhhcCCcchHHHHHHH
Confidence 4557888888889999998887776544
No 169
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=29.54 E-value=2.5e+02 Score=23.62 Aligned_cols=37 Identities=14% Similarity=0.138 Sum_probs=27.2
Q ss_pred CCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCC
Q 030516 92 SVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGY 128 (176)
Q Consensus 92 ~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~ 128 (176)
+...+-+.+..++..+.+...+.+.++|.|++.-.+-
T Consensus 202 ~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~G 238 (368)
T PF01645_consen 202 PGKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEG 238 (368)
T ss_dssp TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT-
T ss_pred CCCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCC
Confidence 3456888888899888888888889999999976554
No 170
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=29.34 E-value=1.5e+02 Score=20.00 Aligned_cols=70 Identities=11% Similarity=-0.021 Sum_probs=38.1
Q ss_pred HHHHHHHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcccchhcccccchhhhheeeccccccccccC
Q 030516 80 VVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKSTISCFIWYLIFSRVELGMVNCFG 159 (176)
Q Consensus 80 ~l~~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~gvs~~~~~~~~~~~~~~~~~~~~ 159 (176)
..++.++.+.+.+. +++ +...... .+.++....++|+|++|.+=+-...++ -...-.-.+||..+++.-
T Consensus 17 la~k~k~~~~e~gi-~~~--i~a~~~~-e~~~~~~~~~~DvIll~PQi~~~~~~i-------~~~~~~~~ipv~~I~~~~ 85 (104)
T PRK09590 17 MAKKTTEYLKEQGK-DIE--VDAITAT-EGEKAIAAAEYDLYLVSPQTKMYFKQF-------EEAGAKVGKPVVQIPPQA 85 (104)
T ss_pred HHHHHHHHHHHCCC-ceE--EEEecHH-HHHHhhccCCCCEEEEChHHHHHHHHH-------HHHhhhcCCCEEEeCHHH
Confidence 44455566666663 333 4333332 355555556899999997755333322 122223467777777644
Q ss_pred c
Q 030516 160 Y 160 (176)
Q Consensus 160 ~ 160 (176)
|
T Consensus 86 Y 86 (104)
T PRK09590 86 Y 86 (104)
T ss_pred c
Confidence 3
No 171
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=29.28 E-value=2.9e+02 Score=21.91 Aligned_cols=30 Identities=17% Similarity=0.143 Sum_probs=17.5
Q ss_pred EEEEcCChHHHHHHHHHhcCCcEEEEeccCCc
Q 030516 98 VEVVEGDARNILCEAVEKHHASILVVGSHGYG 129 (176)
Q Consensus 98 ~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~ 129 (176)
.....++..++.+.... ++||+|||+-..+
T Consensus 81 ~~~~~~di~~e~~~e~~--~~~LLvmGkie~~ 110 (255)
T COG3640 81 ENPLVSDLPDEYLVENG--DIDLLVMGKIEEG 110 (255)
T ss_pred cCcchhhhhHHHhhhcC--CccEEEeccccCC
Confidence 33344554444443333 6899999987753
No 172
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=29.25 E-value=1.2e+02 Score=21.93 Aligned_cols=78 Identities=15% Similarity=0.236 Sum_probs=42.6
Q ss_pred HHHHhhhcCCcceEEEEEc--CChHHHHHHHHHhcCCcEEEEeccCCc----ccchhccccc---------------chh
Q 030516 84 AKEICSSKSVHDFVVEVVE--GDARNILCEAVEKHHASILVVGSHGYG----AIKRYKSTIS---------------CFI 142 (176)
Q Consensus 84 ~~~~~~~~~~~~v~~~v~~--G~~~~~I~~~a~~~~~DlIV~Gs~g~~----~l~~~l~gvs---------------~~~ 142 (176)
.++.+.+.+. ++++.... |...+.|-+... ++|-||+-.-+.+ ++...+.+++ +|-
T Consensus 35 ~~~~a~~~g~-~~~~~QSN~EGelId~i~~a~~--~~dgiIINpga~THtSiAl~DAl~~~~~P~VEVHiSNi~aRE~fR 111 (146)
T PRK13015 35 CRAAAEALGL-EVEFRQSNHEGELIDWIHEARG--DVAGIVINPGAYTHTSVAIRDALAALELPVIEVHISNVHAREAFR 111 (146)
T ss_pred HHHHHHHcCC-EEEEEeeCcHHHHHHHHHHhhh--cCCEEEEcchHHhhhHHHHHHHHHcCCCCEEEEEcCCcccccccc
Confidence 3344444442 45544433 445555555433 6899999755443 3333332211 233
Q ss_pred hhheeeccccccccccCcccce
Q 030516 143 WYLIFSRVELGMVNCFGYYSYL 164 (176)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~ 164 (176)
.....|.+-+.+|--||..+|.
T Consensus 112 ~~S~is~~~~G~I~G~G~~gY~ 133 (146)
T PRK13015 112 HHSYVSAIADGVICGLGTEGYR 133 (146)
T ss_pred ccccccCceeEEEeeCCHHHHH
Confidence 4456777777778888887774
No 173
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=29.21 E-value=47 Score=29.76 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=17.8
Q ss_pred hHHHHHHHHHhcCCcEEEEeccC
Q 030516 105 ARNILCEAVEKHHASILVVGSHG 127 (176)
Q Consensus 105 ~~~~I~~~a~~~~~DlIV~Gs~g 127 (176)
-.+++.++++++++.+||+|..-
T Consensus 56 d~~ala~f~~e~~I~lVvvGPE~ 78 (788)
T KOG0237|consen 56 DFEALASFCKEHNINLVVVGPEL 78 (788)
T ss_pred hHHHHHHHHHHcceeEEEECCch
Confidence 46778888888888888888654
No 174
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=29.07 E-value=30 Score=24.23 Aligned_cols=56 Identities=11% Similarity=0.166 Sum_probs=27.1
Q ss_pred hHHHHHHHHHhcCCcEEEEeccCCcccchhcccccchhhhheeeccccccccccCcccc
Q 030516 105 ARNILCEAVEKHHASILVVGSHGYGAIKRYKSTISCFIWYLIFSRVELGMVNCFGYYSY 163 (176)
Q Consensus 105 ~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~gvs~~~~~~~~~~~~~~~~~~~~~~~~ 163 (176)
-.+-.....+ .+|.+|+-.-|-|.+.+++...+ +...-.-.++|+..+|..|||+=
T Consensus 43 ~~~Rk~~m~~--~sda~I~lPGG~GTl~El~~~~~-~~~l~~~~~~Piil~~~~g~w~~ 98 (133)
T PF03641_consen 43 MFERKEIMIE--SSDAFIALPGGIGTLDELFEALT-LMQLGRHNKVPIILLNIDGFWDP 98 (133)
T ss_dssp HHHHHHHHHH--HESEEEEES-SHHHHHHHHHHHH-HHHTTSSTS-EEEEEECGGCCHH
T ss_pred hHHHHHHHHH--hCCEEEEEecCCchHHHHHHHHH-HHhhccccCCCEEEeCCcchHHH
Confidence 3333334444 45666666666666666653222 11111124557777777776653
No 175
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=29.06 E-value=3e+02 Score=22.03 Aligned_cols=30 Identities=13% Similarity=0.126 Sum_probs=23.0
Q ss_pred hHHHHHHHHHhcCCcEEEEeccCCcccchh
Q 030516 105 ARNILCEAVEKHHASILVVGSHGYGAIKRY 134 (176)
Q Consensus 105 ~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~ 134 (176)
....+.+..++.++|+||+..-.+---..+
T Consensus 153 ~~~~~~~~l~~~~~Dlivlagy~~il~~~~ 182 (286)
T PRK06027 153 AEARLLELIDEYQPDLVVLARYMQILSPDF 182 (286)
T ss_pred hHHHHHHHHHHhCCCEEEEecchhhcCHHH
Confidence 566789999999999999998776433333
No 176
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=28.70 E-value=2.1e+02 Score=23.17 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=24.8
Q ss_pred EEEEcCChHHHHHHHHHhcCCcEEEEeccCC
Q 030516 98 VEVVEGDARNILCEAVEKHHASILVVGSHGY 128 (176)
Q Consensus 98 ~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~ 128 (176)
..+.+.+-.+.|.++.+++.+|+||+--|.-
T Consensus 135 ~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD~ 165 (287)
T PF05582_consen 135 IHVPEKEQPEKIYRLLEEYRPDILVITGHDG 165 (287)
T ss_pred EEechHHhhHHHHHHHHHcCCCEEEEeCchh
Confidence 4455556688999999999999999987653
No 177
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=28.33 E-value=3.8e+02 Score=22.91 Aligned_cols=17 Identities=6% Similarity=0.217 Sum_probs=14.0
Q ss_pred cCCcEEEEeccCCcccc
Q 030516 116 HHASILVVGSHGYGAIK 132 (176)
Q Consensus 116 ~~~DlIV~Gs~g~~~l~ 132 (176)
.++|+|++-+.|+....
T Consensus 284 ~~~D~VLIDTAGr~~~d 300 (407)
T PRK12726 284 NCVDHILIDTVGRNYLA 300 (407)
T ss_pred CCCCEEEEECCCCCccC
Confidence 57899999999997644
No 178
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=28.31 E-value=2.6e+02 Score=22.92 Aligned_cols=42 Identities=19% Similarity=0.236 Sum_probs=23.5
Q ss_pred HHHHHHHHhhh-cCCcceEEEEEc---CC-hHHHHHHHHHhcCCcEEE
Q 030516 80 VVEEAKEICSS-KSVHDFVVEVVE---GD-ARNILCEAVEKHHASILV 122 (176)
Q Consensus 80 ~l~~~~~~~~~-~~~~~v~~~v~~---G~-~~~~I~~~a~~~~~DlIV 122 (176)
.|++.+..+.+ ++ .++.+.+.. |+ .-+.|.+.....++..+|
T Consensus 85 KL~~v~kEI~~~~~-vev~~i~~Dft~~~~~ye~i~~~l~~~~VgILV 131 (312)
T KOG1014|consen 85 KLEAVAKEIEEKYK-VEVRIIAIDFTKGDEVYEKLLEKLAGLDVGILV 131 (312)
T ss_pred HHHHHHHHHHHHhC-cEEEEEEEecCCCchhHHHHHHHhcCCceEEEE
Confidence 34444433333 34 345555443 44 367788888867776666
No 179
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=28.20 E-value=59 Score=22.69 Aligned_cols=30 Identities=13% Similarity=0.176 Sum_probs=23.3
Q ss_pred HHHHHHHHHhcCCcEEEEeccCCcccchhc
Q 030516 106 RNILCEAVEKHHASILVVGSHGYGAIKRYK 135 (176)
Q Consensus 106 ~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l 135 (176)
+-.+.+.++++++|+|+.+.-|++++.-+-
T Consensus 54 G~~~a~~l~~~gvdvvi~~~iG~~a~~~l~ 83 (121)
T COG1433 54 GIRIAELLVDEGVDVVIASNIGPNAYNALK 83 (121)
T ss_pred hHHHHHHHHHcCCCEEEECccCHHHHHHHH
Confidence 456888888888888888888887776543
No 180
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=28.19 E-value=3.6e+02 Score=22.68 Aligned_cols=34 Identities=15% Similarity=0.118 Sum_probs=25.9
Q ss_pred CCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEe
Q 030516 6 TQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHAR 48 (176)
Q Consensus 6 ~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~ 48 (176)
-.++++.+++.-+|.-|.-.+.+ + |.+|..+|..
T Consensus 180 ~gkvlvllSGGiDSpVAa~ll~k---r------G~~V~~v~f~ 213 (381)
T PRK08384 180 QGKVVALLSGGIDSPVAAFLMMK---R------GVEVIPVHIY 213 (381)
T ss_pred CCcEEEEEeCChHHHHHHHHHHH---c------CCeEEEEEEE
Confidence 47899999999888766544433 3 7799999994
No 181
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=27.87 E-value=2.9e+02 Score=21.44 Aligned_cols=50 Identities=4% Similarity=-0.126 Sum_probs=34.5
Q ss_pred HHHHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcccchhc
Q 030516 83 EAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYK 135 (176)
Q Consensus 83 ~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l 135 (176)
++.+.+.+.+. .+=..+-.+.|.+.+..+.. .+|+|.+=+...|.-.+-|
T Consensus 99 ~~i~~Ik~~G~-kaGlalnP~T~~~~l~~~l~--~vD~VLvMsV~PGf~GQ~f 148 (229)
T PRK09722 99 RLIDEIRRAGM-KVGLVLNPETPVESIKYYIH--LLDKITVMTVDPGFAGQPF 148 (229)
T ss_pred HHHHHHHHcCC-CEEEEeCCCCCHHHHHHHHH--hcCEEEEEEEcCCCcchhc
Confidence 34445555553 45566777889999999999 8898888777665444333
No 182
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=27.60 E-value=2.9e+02 Score=21.34 Aligned_cols=91 Identities=12% Similarity=0.171 Sum_probs=49.5
Q ss_pred EEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHHH
Q 030516 8 TMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEI 87 (176)
Q Consensus 8 ~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 87 (176)
++++.+.+..+|..|+.++.+. .. .+.+++..+........... . .+.++ ..
T Consensus 2 kv~vl~SGGKDS~lAl~~~~~~-~~--------V~~L~~~~~~~~~s~~~h~~---------~-------~~~~~---~q 53 (222)
T TIGR00289 2 KVAVLYSGGKDSILALYKALEE-HE--------VISLVGVFSENEESYMFHSP---------N-------LHLTD---LV 53 (222)
T ss_pred eEEEEecCcHHHHHHHHHHHHc-Ce--------eEEEEEEcCCCCCccccccC---------C-------HHHHH---HH
Confidence 5788999999999999999875 32 44555554432211000000 0 01111 12
Q ss_pred hhhcCCcceEEEEEcC---ChHHHHHHHHHhcCCcEEEEeccC
Q 030516 88 CSSKSVHDFVVEVVEG---DARNILCEAVEKHHASILVVGSHG 127 (176)
Q Consensus 88 ~~~~~~~~v~~~v~~G---~~~~~I~~~a~~~~~DlIV~Gs~g 127 (176)
++..+. +.......| +..+.+.+..++.+++.||-|.--
T Consensus 54 A~algi-Pl~~~~~~~~~e~~~~~l~~~l~~~gv~~vv~GdI~ 95 (222)
T TIGR00289 54 AEAVGI-PLIKLYTSGEEEKEVEDLAGQLGELDVEALCIGAIE 95 (222)
T ss_pred HHHcCC-CeEEEEcCCchhHHHHHHHHHHHHcCCCEEEECccc
Confidence 222332 232222233 356667777777788999888664
No 183
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=27.57 E-value=62 Score=25.84 Aligned_cols=46 Identities=11% Similarity=0.224 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCC
Q 030516 78 ARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGY 128 (176)
Q Consensus 78 ~~~l~~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~ 128 (176)
++.++++++.+.....+ +-..-|. --..+++++.++|+|++-+.|+
T Consensus 1 ~eil~~l~~~i~~~~pI---ig~gaGt--GlsAk~ae~gGaDlI~~ynsGr 46 (268)
T PF09370_consen 1 KEILDRLRAQIKAGKPI---IGAGAGT--GLSAKCAEKGGADLILIYNSGR 46 (268)
T ss_dssp -HHHHHHHHHHHTT--E---EEEEESS--HHHHHHHHHTT-SEEEE-HHHH
T ss_pred ChHHHHHHHHHhCCCce---EEEeecc--chhhHHHHhcCCCEEEEecchh
Confidence 45677787777665321 2223343 3356788888999999987764
No 184
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=27.57 E-value=24 Score=25.17 Aligned_cols=13 Identities=38% Similarity=0.761 Sum_probs=11.2
Q ss_pred cccccccccCcccc
Q 030516 150 VELGMVNCFGYYSY 163 (176)
Q Consensus 150 ~~~~~~~~~~~~~~ 163 (176)
+|++ +.||||+.|
T Consensus 122 vPll-lsP~~ySty 134 (137)
T PRK15036 122 VPLL-LSQYGYSTY 134 (137)
T ss_pred ECeE-ecCCccccc
Confidence 7887 889999988
No 185
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=27.51 E-value=2.4e+02 Score=20.32 Aligned_cols=80 Identities=18% Similarity=0.103 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhcccCCCCCCcEEEEEEEec--CCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHHHhhhcCCcceE
Q 030516 20 TYALQWTLDHFFANSTVNPPFKLVIVHARP--SPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDFV 97 (176)
Q Consensus 20 ~~al~~a~~la~~~~~~~~~a~v~lvhv~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~ 97 (176)
..-+..++.+|+.. |++...+|... ... ....+...+...+.++++.+.+.+++. .+.
T Consensus 70 ~~~~~~~i~~a~~l-----g~~~i~~~~g~~~~~~--------------~~~~~~~~~~~~~~l~~l~~~a~~~gv-~i~ 129 (213)
T PF01261_consen 70 LEYLKKAIDLAKRL-----GAKYIVVHSGRYPSGP--------------EDDTEENWERLAENLRELAEIAEEYGV-RIA 129 (213)
T ss_dssp HHHHHHHHHHHHHH-----TBSEEEEECTTESSST--------------TSSHHHHHHHHHHHHHHHHHHHHHHTS-EEE
T ss_pred HHHHHHHHHHHHHh-----CCCceeecCccccccc--------------CCCHHHHHHHHHHHHHHHHhhhhhhcc-eEE
Confidence 56778888888884 77888888641 111 112346667778888888888888774 455
Q ss_pred EEEEcCCh---H---HHHHHHHHhcCCc
Q 030516 98 VEVVEGDA---R---NILCEAVEKHHAS 119 (176)
Q Consensus 98 ~~v~~G~~---~---~~I~~~a~~~~~D 119 (176)
.+-..+.. . +.+.+..++.+.+
T Consensus 130 lE~~~~~~~~~~~~~~~~~~~l~~~~~~ 157 (213)
T PF01261_consen 130 LENHPGPFSETPFSVEEIYRLLEEVDSP 157 (213)
T ss_dssp EE-SSSSSSSEESSHHHHHHHHHHHTTT
T ss_pred EecccCccccchhhHHHHHHHHhhcCCC
Confidence 55544433 2 8888888877644
No 186
>PRK11914 diacylglycerol kinase; Reviewed
Probab=27.46 E-value=2.5e+02 Score=22.37 Aligned_cols=19 Identities=26% Similarity=0.191 Sum_probs=11.1
Q ss_pred hHHHHHHHHHhcCCcEEEE
Q 030516 105 ARNILCEAVEKHHASILVV 123 (176)
Q Consensus 105 ~~~~I~~~a~~~~~DlIV~ 123 (176)
-++.+.+.+.+.++|+||+
T Consensus 52 ~~~~~a~~~~~~~~d~vvv 70 (306)
T PRK11914 52 DARHLVAAALAKGTDALVV 70 (306)
T ss_pred HHHHHHHHHHhcCCCEEEE
Confidence 3555565555667776553
No 187
>cd05821 TLP_Transthyretin Transthyretin (TTR) is a 55 kDa protein responsible for the transport of thyroid hormones and retinol in vertebrates. TTR distributes the two thyroid hormones T3 (3,5,3'-triiodo-L-thyronine) and T4 (Thyroxin, or 3,5,3',5'-tetraiodo-L-thyronine), as well as retinol (vitamin A) through the formation of a macromolecular complex that includes each of these as well as retinol-binding protein. Misfolded forms of TTR are implicated in the amyloid diseases familial amyloidotic polyneuropathy and senile systemic amyloidosis. TTR forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits, which differ in their ligand binding affinity. A negative cooperativity has been observed for the binding of T4 and other TTR ligands. A fraction of plasma TTR is carried in high density lipoproteins by bindi
Probab=27.45 E-value=24 Score=24.61 Aligned_cols=14 Identities=7% Similarity=0.166 Sum_probs=12.0
Q ss_pred cccccccccCcccce
Q 030516 150 VELGMVNCFGYYSYL 164 (176)
Q Consensus 150 ~~~~~~~~~~~~~~~ 164 (176)
+|++ +.+||||.|.
T Consensus 104 VPLL-lSP~gYST~~ 117 (121)
T cd05821 104 IAAL-LSPYSYSTTA 117 (121)
T ss_pred eCeE-ecCCcceeEE
Confidence 7888 8999999884
No 188
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=27.11 E-value=1.2e+02 Score=24.81 Aligned_cols=71 Identities=15% Similarity=0.099 Sum_probs=49.2
Q ss_pred HHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcccchhcccccchhhhheeeccccccccccCcccce
Q 030516 85 KEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKSTISCFIWYLIFSRVELGMVNCFGYYSYL 164 (176)
Q Consensus 85 ~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~gvs~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (176)
.+.++.... .+++.+..++..+.=-++-. +.|+||++-..+....+ +.+.|.++- ++.+-..+||++-|.
T Consensus 91 ~erl~~LNP-mV~v~~d~edl~ek~eeff~--qFdlVV~~~~s~e~~~k----vn~icrk~~---i~F~a~d~~g~~Gy~ 160 (331)
T KOG2014|consen 91 LERLQDLNP-MVDVSVDKEDLSEKDEEFFT--QFDLVVATDQSREEKCK----VNEICRKLN---IAFYAGDCFGLCGYA 160 (331)
T ss_pred HHHHHhcCC-ceEEEechhhhhhcchhhhh--ceeEEEEeccchhhhhh----HHHHHHhcC---ceEEeccccceeeee
Confidence 344444432 47777777775555556666 99999999888766554 456666654 778888999998875
Q ss_pred e
Q 030516 165 S 165 (176)
Q Consensus 165 ~ 165 (176)
-
T Consensus 161 F 161 (331)
T KOG2014|consen 161 F 161 (331)
T ss_pred e
Confidence 3
No 189
>smart00095 TR_THY Transthyretin.
Probab=26.58 E-value=26 Score=24.47 Aligned_cols=15 Identities=7% Similarity=0.133 Sum_probs=12.5
Q ss_pred cccccccccCccccee
Q 030516 150 VELGMVNCFGYYSYLS 165 (176)
Q Consensus 150 ~~~~~~~~~~~~~~~~ 165 (176)
+|++ +.+||||.|.-
T Consensus 101 VPLL-lSP~~YST~~~ 115 (121)
T smart00095 101 IAAL-LSPYSYSTTAV 115 (121)
T ss_pred ECeE-ecCCcceeEEE
Confidence 7888 89999999843
No 190
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=26.50 E-value=54 Score=23.52 Aligned_cols=61 Identities=18% Similarity=0.172 Sum_probs=39.1
Q ss_pred ceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcccchhcccccchhhhheeeccccccccccCccc
Q 030516 95 DFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKSTISCFIWYLIFSRVELGMVNCFGYYS 162 (176)
Q Consensus 95 ~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~gvs~~~~~~~~~~~~~~~~~~~~~~~ 162 (176)
++.-+++.|.|.+.=.+..+++++|.|++|--.......+ ...+.+ --..+.+++.+|++.
T Consensus 64 ryVD~vi~~~p~~~~~~~i~~~k~Div~lG~D~~~d~~~l----~~~~~k---~G~~~~v~R~~g~~~ 124 (140)
T COG0615 64 RYVDEVILGAPWDIKFEDIEEYKPDIVVLGDDQKFDEDDL----KYELVK---RGLFVEVKRTEGVST 124 (140)
T ss_pred cchheeeeCCccccChHHHHHhCCCEEEECCCCcCChHHH----HHHHHH---cCCeeEEEeccCccc
Confidence 3445678888887768999999999999998776333221 122222 123344567777665
No 191
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=26.46 E-value=3.1e+02 Score=21.29 Aligned_cols=45 Identities=20% Similarity=0.434 Sum_probs=27.0
Q ss_pred HHHHHHHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEecc
Q 030516 80 VVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSH 126 (176)
Q Consensus 80 ~l~~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~ 126 (176)
...++++...+.+ .++... +.|.....-+..+.+-++|.+|+|+.
T Consensus 155 KI~~lr~~~~~~~-~~~~Ie-VDGGI~~~~i~~~~~aGad~~V~Gss 199 (229)
T PRK09722 155 KIAELKALRERNG-LEYLIE-VDGSCNQKTYEKLMEAGADVFIVGTS 199 (229)
T ss_pred HHHHHHHHHHhcC-CCeEEE-EECCCCHHHHHHHHHcCCCEEEEChH
Confidence 3344444554444 234443 34555555666677789999999964
No 192
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=26.27 E-value=2.4e+02 Score=23.11 Aligned_cols=54 Identities=20% Similarity=0.209 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhhhcCCcceEEEEEcCC-----hHHHHHHHHHhcCCcEEEEeccCCcccch
Q 030516 75 KIAARVVEEAKEICSSKSVHDFVVEVVEGD-----ARNILCEAVEKHHASILVVGSHGYGAIKR 133 (176)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~~~v~~~v~~G~-----~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~ 133 (176)
+...+.++.+.+...+ +++++.++-|- ....+.+.+++.+++.+.+ |+|+...+
T Consensus 121 ~lv~~iv~a~~~av~~---iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltV--HgRtr~~~ 179 (323)
T COG0042 121 ELLAEIVKAMVEAVGD---IPVTVKIRLGWDDDDILALEIARILEDAGADALTV--HGRTRAQG 179 (323)
T ss_pred HHHHHHHHHHHHhhCC---CCeEEEEecccCcccccHHHHHHHHHhcCCCEEEE--ecccHHhc
Confidence 4445566665555532 23555555543 2567999999999999988 44444443
No 193
>PRK00211 sulfur relay protein TusC; Validated
Probab=26.09 E-value=2.2e+02 Score=19.49 Aligned_cols=35 Identities=6% Similarity=-0.038 Sum_probs=24.1
Q ss_pred CEEEEEec----CCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEE
Q 030516 7 QTMVVGID----DSEQSTYALQWTLDHFFANSTVNPPFKLVIVHA 47 (176)
Q Consensus 7 ~~ILVavD----~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv 47 (176)
++|++-+. +++.++.+++.|+.++.. +-+|.++..
T Consensus 2 ~ki~~i~~~~Pyg~~~~~eaLd~ala~~a~------~~~v~vff~ 40 (119)
T PRK00211 2 KRIAFVFRQAPHGTASGREGLDALLATSAF------TEDIGVFFI 40 (119)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHHHHHhcc------cCCeeEEEE
Confidence 57888887 445677888888877665 226766654
No 194
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=25.93 E-value=2.6e+02 Score=23.71 Aligned_cols=81 Identities=20% Similarity=0.192 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcc-cchhcccccchhhhheeecccccccc
Q 030516 78 ARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGA-IKRYKSTISCFIWYLIFSRVELGMVN 156 (176)
Q Consensus 78 ~~~l~~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~-l~~~l~gvs~~~~~~~~~~~~~~~~~ 156 (176)
+...+.+.+.+.+.+. .++..-..-.....|.+.+. +++-+|+|+..... ..-.+...=.++..+.+-+-++.+.-
T Consensus 261 ~~ma~aiaegl~~~gv-~v~~~~~~~~~~~eI~~~i~--~a~~~vvGsPT~~~~~~p~i~~~l~~v~~~~~~~k~~~vfg 337 (388)
T COG0426 261 EKMAQAIAEGLMKEGV-DVEVINLEDADPSEIVEEIL--DAKGLVVGSPTINGGAHPPIQTALGYVLALAPKNKLAGVFG 337 (388)
T ss_pred HHHHHHHHHHhhhcCC-ceEEEEcccCCHHHHHHHHh--hcceEEEecCcccCCCCchHHHHHHHHHhccCcCceEEEEe
Confidence 4455555566666664 46655555556777888887 88999999876311 11111111124455555566666555
Q ss_pred ccCcc
Q 030516 157 CFGYY 161 (176)
Q Consensus 157 ~~~~~ 161 (176)
.+|.+
T Consensus 338 S~GW~ 342 (388)
T COG0426 338 SYGWS 342 (388)
T ss_pred ccCCC
Confidence 55544
No 195
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=25.81 E-value=2e+02 Score=19.15 Aligned_cols=39 Identities=18% Similarity=0.134 Sum_probs=28.6
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEec
Q 030516 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (176)
Q Consensus 5 ~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~ 49 (176)
..+.+++.+..|..+...++.+ +.|+++ |+++..+.-.+
T Consensus 45 ~~~d~~I~iS~sG~t~e~~~~~-~~a~~~-----g~~vi~iT~~~ 83 (126)
T cd05008 45 DEDTLVIAISQSGETADTLAAL-RLAKEK-----GAKTVAITNVV 83 (126)
T ss_pred CCCcEEEEEeCCcCCHHHHHHH-HHHHHc-----CCeEEEEECCC
Confidence 4577999999999888876665 555652 77888776643
No 196
>KOG3180 consensus Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=25.32 E-value=3.2e+02 Score=21.08 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=21.7
Q ss_pred ChHHHHHHHHHhcCCcEEEEeccCC
Q 030516 104 DARNILCEAVEKHHASILVVGSHGY 128 (176)
Q Consensus 104 ~~~~~I~~~a~~~~~DlIV~Gs~g~ 128 (176)
..+..+-..++++..|||++|...-
T Consensus 101 ~vAKiLk~~vekek~~lVllGKQAI 125 (254)
T KOG3180|consen 101 HVAKILKKLVEKEKSDLVLLGKQAI 125 (254)
T ss_pred HHHHHHHHHHHhhcCCEEEEccccc
Confidence 4688899999999999999997653
No 197
>PHA02031 putative DnaG-like primase
Probab=25.25 E-value=1.7e+02 Score=23.47 Aligned_cols=37 Identities=3% Similarity=-0.015 Sum_probs=28.8
Q ss_pred CCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEE
Q 030516 6 TQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHA 47 (176)
Q Consensus 6 ~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv 47 (176)
.++|++.+|++...++|...++.+.... +..+.++..
T Consensus 206 ~~~Vil~fDgD~AG~~Aa~ra~~~l~~~-----~~~v~vv~l 242 (266)
T PHA02031 206 CPRVLIFLDGDPAGVDGSAGAMRRLRPL-----LIEGQVIIT 242 (266)
T ss_pred CCCEEEEeCCCHHHHHHHHHHHHHHHHc-----CCceEEEEC
Confidence 3789999999999999999999988762 445555443
No 198
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=25.24 E-value=2.4e+02 Score=20.27 Aligned_cols=77 Identities=16% Similarity=0.185 Sum_probs=40.8
Q ss_pred HHHhhhcCCcceEEEEEc--CChHHHHHHHHHhcCCcEEEEeccCCc----ccchhccccc---------------chhh
Q 030516 85 KEICSSKSVHDFVVEVVE--GDARNILCEAVEKHHASILVVGSHGYG----AIKRYKSTIS---------------CFIW 143 (176)
Q Consensus 85 ~~~~~~~~~~~v~~~v~~--G~~~~~I~~~a~~~~~DlIV~Gs~g~~----~l~~~l~gvs---------------~~~~ 143 (176)
++.+.+.+. ++++.... |...+.|-+..+ .+|-||+-.-+.+ ++...+.+++ +|-.
T Consensus 34 ~~~a~~~g~-~v~~~QSN~EGelId~i~~a~~--~~dgiIINpga~THtSiAl~DAl~~~~~P~vEVHiSNi~aRE~fR~ 110 (141)
T TIGR01088 34 ETFAAQLNV-ELEFFQSNSEGQLIDKIHEAEG--QYDGIIINPGALTHTSVALRDALAAVSLPVVEVHLSNVHAREEFRH 110 (141)
T ss_pred HHHHHHcCC-EEEEEeeCcHHHHHHHHHhccc--cCCEEEEcChHHhhhHHHHHHHHHcCCCCEEEEEcCCccccccccc
Confidence 344444442 34444432 334444444322 5899999755543 2333332211 2444
Q ss_pred hheeeccccccccccCcccce
Q 030516 144 YLIFSRVELGMVNCFGYYSYL 164 (176)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~ 164 (176)
...+|.+-+.+|--||..+|.
T Consensus 111 ~S~is~~~~G~I~G~G~~gY~ 131 (141)
T TIGR01088 111 HSYTAPVAGGVIVGLGAQGYL 131 (141)
T ss_pred cccccccceEEEeecCHHHHH
Confidence 566677777777778877774
No 199
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=25.22 E-value=1.7e+02 Score=17.91 Aligned_cols=26 Identities=0% Similarity=-0.125 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhcccCCCCCCcEEEEEEEecCC
Q 030516 20 TYALQWTLDHFFANSTVNPPFKLVIVHARPSP 51 (176)
Q Consensus 20 ~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~ 51 (176)
..+++.|..++.. +.++++++--+..
T Consensus 9 ~ig~E~A~~l~~~------g~~vtli~~~~~~ 34 (80)
T PF00070_consen 9 FIGIELAEALAEL------GKEVTLIERSDRL 34 (80)
T ss_dssp HHHHHHHHHHHHT------TSEEEEEESSSSS
T ss_pred HHHHHHHHHHHHh------CcEEEEEeccchh
Confidence 4567788778776 6799998775543
No 200
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=25.08 E-value=2.7e+02 Score=21.43 Aligned_cols=52 Identities=15% Similarity=0.216 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcc
Q 030516 76 IAARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGA 130 (176)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~ 130 (176)
-.++.+.+......+++.. .+ -+.|-.+..-+..+.+-+++.+|.||.-.++
T Consensus 152 Fme~mm~KV~~lR~kyp~l--~i-evDGGv~~~ti~~~a~AGAN~iVaGsavf~a 203 (224)
T KOG3111|consen 152 FMEDMMPKVEWLREKYPNL--DI-EVDGGVGPSTIDKAAEAGANMIVAGSAVFGA 203 (224)
T ss_pred hHHHHHHHHHHHHHhCCCc--eE-EecCCcCcchHHHHHHcCCCEEEecceeecC
Confidence 3455666666665667754 22 2455566666777777899999999865443
No 201
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=25.00 E-value=3.3e+02 Score=21.13 Aligned_cols=43 Identities=21% Similarity=0.384 Sum_probs=26.8
Q ss_pred HHHHHHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEecc
Q 030516 81 VEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSH 126 (176)
Q Consensus 81 l~~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~ 126 (176)
++++++.+.+.+ ++.++ +.|.....-+..+.+-++|.+|.||-
T Consensus 157 i~~lr~~~~~~~--~~~Ie-VDGGI~~~t~~~~~~AGad~~VaGSa 199 (220)
T COG0036 157 IRELRAMIDERL--DILIE-VDGGINLETIKQLAAAGADVFVAGSA 199 (220)
T ss_pred HHHHHHHhcccC--CeEEE-EeCCcCHHHHHHHHHcCCCEEEEEEE
Confidence 333444444322 24443 34556666777777789999999983
No 202
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=24.90 E-value=2.3e+02 Score=23.35 Aligned_cols=54 Identities=17% Similarity=0.212 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCCcEEEEeccCCcccchhcccccchhhhheeeccccccccccCcccceeeeee
Q 030516 107 NILCEAVEKHHASILVVGSHGYGAIKRYKSTISCFIWYLIFSRVELGMVNCFGYYSYLSIIKR 169 (176)
Q Consensus 107 ~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~gvs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (176)
+.+.+..+ ++|+||.++-... .+++ ++++|.+ .++|.....+.|.+.+..+|.|
T Consensus 108 ~~~~~~~~--~~DlVid~~D~~~--~r~~--in~~~~~---~~ip~i~~~~~g~~G~~~~~~P 161 (338)
T PRK12475 108 EELEELVK--EVDLIIDATDNFD--TRLL--INDLSQK---YNIPWIYGGCVGSYGVTYTIIP 161 (338)
T ss_pred HHHHHHhc--CCCEEEEcCCCHH--HHHH--HHHHHHH---cCCCEEEEEecccEEEEEEECC
Confidence 44556666 8999999985432 2333 4566655 3567776777888888777776
No 203
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=24.89 E-value=78 Score=24.00 Aligned_cols=46 Identities=24% Similarity=0.385 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEec
Q 030516 78 ARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGS 125 (176)
Q Consensus 78 ~~~l~~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs 125 (176)
-+.++++++...+.+ ..+... +.|.....-+....+-++|.+|+||
T Consensus 150 ~~KI~~l~~~~~~~~-~~~~I~-vDGGI~~~~~~~~~~aGad~~V~Gs 195 (201)
T PF00834_consen 150 LEKIRELRKLIPENG-LDFEIE-VDGGINEENIKQLVEAGADIFVAGS 195 (201)
T ss_dssp HHHHHHHHHHHHHHT-CGSEEE-EESSESTTTHHHHHHHT--EEEESH
T ss_pred HHHHHHHHHHHHhcC-CceEEE-EECCCCHHHHHHHHHcCCCEEEECH
Confidence 344455555665554 235554 3455555556666678999999996
No 204
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=24.76 E-value=2.5e+02 Score=21.61 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=18.7
Q ss_pred EcCChHHHHHHHHHhcCCcEEEEecc
Q 030516 101 VEGDARNILCEAVEKHHASILVVGSH 126 (176)
Q Consensus 101 ~~G~~~~~I~~~a~~~~~DlIV~Gs~ 126 (176)
+.|.....-+..+.+.++|.+|+|+.
T Consensus 178 VdGGI~~~ti~~~~~aGad~iVvGsa 203 (228)
T PTZ00170 178 VDGGINLETIDIAADAGANVIVAGSS 203 (228)
T ss_pred ECCCCCHHHHHHHHHcCCCEEEEchH
Confidence 44555555666777789999999954
No 205
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=24.75 E-value=88 Score=20.17 Aligned_cols=29 Identities=17% Similarity=0.356 Sum_probs=18.9
Q ss_pred HHHHHHHHhcCCcEEEEeccCCcccchhc
Q 030516 107 NILCEAVEKHHASILVVGSHGYGAIKRYK 135 (176)
Q Consensus 107 ~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l 135 (176)
..+.+...+.++|.||.+.-|.+....+.
T Consensus 53 ~~~~~~l~~~~v~~vi~~~iG~~~~~~l~ 81 (103)
T cd00851 53 GKAAEFLADEGVDVVIVGGIGPRALNKLR 81 (103)
T ss_pred hHHHHHHHHcCCCEEEeCCCCcCHHHHHH
Confidence 44555556677788877777766665554
No 206
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=24.62 E-value=87 Score=22.58 Aligned_cols=23 Identities=9% Similarity=0.327 Sum_probs=17.2
Q ss_pred hHHHHHHHHHhcCCcEEEEeccCC
Q 030516 105 ARNILCEAVEKHHASILVVGSHGY 128 (176)
Q Consensus 105 ~~~~I~~~a~~~~~DlIV~Gs~g~ 128 (176)
..+.+.++.++.++|+|| ++|..
T Consensus 77 ~~~~l~~~l~~~~PD~II-sThp~ 99 (169)
T PF06925_consen 77 FARRLIRLLREFQPDLII-STHPF 99 (169)
T ss_pred HHHHHHHHHhhcCCCEEE-ECCcc
Confidence 567888999999999655 55554
No 207
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=24.61 E-value=3.7e+02 Score=21.60 Aligned_cols=93 Identities=10% Similarity=0.088 Sum_probs=49.5
Q ss_pred EEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHHH
Q 030516 8 TMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEI 87 (176)
Q Consensus 8 ~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 87 (176)
+|-|.+.-...+..-++-|-++.+.+ + ...++|++-|..+. .+.+....+....
T Consensus 4 kIGivTgtvSq~ed~~r~Ae~l~~~Y---g---~~~I~h~tyPdnf~--------------------~e~EttIskI~~l 57 (275)
T PF12683_consen 4 KIGIVTGTVSQSEDEYRGAEELIKKY---G---DVMIKHVTYPDNFM--------------------SEQETTISKIVSL 57 (275)
T ss_dssp EEEEEE--TTT-HHHHHHHHHHHHHH---H---HHEEEEEE--TTGG--------------------GCHHHHHHHHHGG
T ss_pred EEEEEeCCcccChHHHHHHHHHHHHh---C---cceEEEEeCCCccc--------------------chHHHHHHHHHHh
Confidence 45566665566666666666666664 1 22888987766643 1123344444444
Q ss_pred hhhcCCcceEEEEEc-CC-hHHHHHHHHHhcCCcEEEEeccCCc
Q 030516 88 CSSKSVHDFVVEVVE-GD-ARNILCEAVEKHHASILVVGSHGYG 129 (176)
Q Consensus 88 ~~~~~~~~v~~~v~~-G~-~~~~I~~~a~~~~~DlIV~Gs~g~~ 129 (176)
+. .+ .+.+.|+. +. ..-...+-+++.++|++.+....+.
T Consensus 58 Ad-Dp--~mKaIVv~q~vpGt~~af~kIkekRpDIl~ia~~~~E 98 (275)
T PF12683_consen 58 AD-DP--DMKAIVVSQAVPGTAEAFRKIKEKRPDILLIAGEPHE 98 (275)
T ss_dssp GG--T--TEEEEEEE-SS---HHHHHHHHHH-TTSEEEESS--S
T ss_pred cc-CC--CccEEEEeCCCcchHHHHHHHHhcCCCeEEEcCCCcC
Confidence 32 23 46665554 43 3455678888999999999877654
No 208
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=24.51 E-value=1e+02 Score=19.52 Aligned_cols=31 Identities=3% Similarity=-0.004 Sum_probs=24.7
Q ss_pred hHHHHHHHHHhcCCcEEEEeccCCcccchhc
Q 030516 105 ARNILCEAVEKHHASILVVGSHGYGAIKRYK 135 (176)
Q Consensus 105 ~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l 135 (176)
+.+..++.|++.+-|||.+......+.-+++
T Consensus 29 ~~~eAl~~A~~~~lDLV~v~~~~~PPVcKi~ 59 (76)
T PF05198_consen 29 SLREALRLAKEKGLDLVEVSPNADPPVCKIM 59 (76)
T ss_dssp EHHHHHHHHHHTT-EEEEEETTSSS-EEEEE
T ss_pred EHHHHHHHHHHcCCcEEEEcCCCCCCeEEEe
Confidence 4678899999999999999988777777765
No 209
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=24.39 E-value=82 Score=23.39 Aligned_cols=60 Identities=13% Similarity=0.146 Sum_probs=39.3
Q ss_pred cCChHHHHHHHHHhcCCcEEEEeccCCcccchhcccccchhhhheeeccccccccccCccccee
Q 030516 102 EGDARNILCEAVEKHHASILVVGSHGYGAIKRYKSTISCFIWYLIFSRVELGMVNCFGYYSYLS 165 (176)
Q Consensus 102 ~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~gvs~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (176)
..+-.+.-...++ .+|.+|.=.-|-|.+.+++...+- .++-..+.||.++|..|||+-+-
T Consensus 83 ~~~~~~Rk~~m~~--~sda~I~lPGG~GTL~El~e~~~~--~qlg~~~kPiil~n~~g~~~~l~ 142 (178)
T TIGR00730 83 VNGMHERKAMMAE--LADAFIAMPGGFGTLEELFEVLTW--AQLGIHQKPIILFNVNGHFDGLV 142 (178)
T ss_pred ECCHHHHHHHHHH--hCCEEEEcCCCcchHHHHHHHHHH--HHcCCCCCCEEEECCcchHHHHH
Confidence 3444444455555 778888877888888888743221 12223567999999999998543
No 210
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=24.36 E-value=65 Score=25.05 Aligned_cols=30 Identities=17% Similarity=0.237 Sum_probs=24.9
Q ss_pred HHHHHHHHHhcCCcEEEEeccCCcccchhc
Q 030516 106 RNILCEAVEKHHASILVVGSHGYGAIKRYK 135 (176)
Q Consensus 106 ~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l 135 (176)
...+.+.+++.++|.|++|..|.+.+..-|
T Consensus 163 ~~~~~~a~~edgAeaIiLGCAGms~la~~L 192 (230)
T COG4126 163 VIEAAEALKEDGAEAIILGCAGMSDLADQL 192 (230)
T ss_pred HHHHHHHhhhcCCCEEEEcCccHHHHHHHH
Confidence 556777888999999999999998886544
No 211
>PRK14851 hypothetical protein; Provisional
Probab=24.14 E-value=2.4e+02 Score=25.73 Aligned_cols=70 Identities=9% Similarity=0.095 Sum_probs=45.4
Q ss_pred eEEEEEcCC-hHHHHHHHHHhcCCcEEEEeccCCcc-cchhcccccchhhhheeeccccccccccCcccceeeeeeeeee
Q 030516 96 FVVEVVEGD-ARNILCEAVEKHHASILVVGSHGYGA-IKRYKSTISCFIWYLIFSRVELGMVNCFGYYSYLSIIKRTQIC 173 (176)
Q Consensus 96 v~~~v~~G~-~~~~I~~~a~~~~~DlIV~Gs~g~~~-l~~~l~gvs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (176)
+++...... ..+.+.++.+ ++|+||=+.-.... .++++ .+.|.+ .++|+.+..+.|++..+.+|.|...|
T Consensus 113 ~~I~~~~~~i~~~n~~~~l~--~~DvVid~~D~~~~~~r~~l---~~~c~~---~~iP~i~~g~~G~~g~~~~~~p~~~~ 184 (679)
T PRK14851 113 LEITPFPAGINADNMDAFLD--GVDVVLDGLDFFQFEIRRTL---FNMARE---KGIPVITAGPLGYSSAMLVFTPQGMG 184 (679)
T ss_pred CeEEEEecCCChHHHHHHHh--CCCEEEECCCCCcHHHHHHH---HHHHHH---CCCCEEEeecccccceEEEEcCCCCC
Confidence 444444433 3445566666 89998866644332 23343 234444 57899999999999999999987554
No 212
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=24.03 E-value=2.1e+02 Score=21.63 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=29.4
Q ss_pred CCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEE
Q 030516 6 TQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHA 47 (176)
Q Consensus 6 ~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv 47 (176)
.++|.|++.+......+++..-.|... +.+++++-.
T Consensus 2 ~~riivgisGASG~iygvrlLe~L~~~------~~e~hlviS 37 (191)
T COG0163 2 MKRIIVGISGASGAIYGVRLLEVLREL------GVETHLVIS 37 (191)
T ss_pred CcEEEEEEeccccHHHHHHHHHHHHhc------CceEEEEEc
Confidence 478999999999999999888777776 567877743
No 213
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=23.82 E-value=1.6e+02 Score=22.00 Aligned_cols=61 Identities=15% Similarity=0.113 Sum_probs=34.6
Q ss_pred eEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcccchhcccccchhhhheeeccccccccccCccccee
Q 030516 96 FVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKSTISCFIWYLIFSRVELGMVNCFGYYSYLS 165 (176)
Q Consensus 96 v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~gvs~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (176)
+++........+...++.+ ++|+||....... .. .-++++|.+. .+|.......|++.|.-
T Consensus 91 v~i~~~~~~~~~~~~~~~~--~~dvVi~~~~~~~-~~---~~ln~~c~~~---~ip~i~~~~~G~~G~v~ 151 (197)
T cd01492 91 VKVSVDTDDISEKPEEFFS--QFDVVVATELSRA-EL---VKINELCRKL---GVKFYATGVHGLFGFVF 151 (197)
T ss_pred CEEEEEecCccccHHHHHh--CCCEEEECCCCHH-HH---HHHHHHHHHc---CCCEEEEEecCCEEEEE
Confidence 4444433333233444445 8899998765432 11 1245666664 46777777788887753
No 214
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=23.76 E-value=2e+02 Score=23.50 Aligned_cols=47 Identities=26% Similarity=0.296 Sum_probs=28.2
Q ss_pred HHHHHHHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccC
Q 030516 80 VVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHG 127 (176)
Q Consensus 80 ~l~~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g 127 (176)
+++.++...+.... ++.++...........+..++.++|.|+++.++
T Consensus 167 ~le~i~~i~~~~~v-PVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg~g 213 (333)
T TIGR02151 167 WLEKIAEICSQLSV-PVIVKEVGFGISKEVAKLLADAGVSAIDVAGAG 213 (333)
T ss_pred HHHHHHHHHHhcCC-CEEEEecCCCCCHHHHHHHHHcCCCEEEECCCC
Confidence 44444444443332 344443322245677788888999999998765
No 215
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=23.72 E-value=3.8e+02 Score=21.42 Aligned_cols=26 Identities=8% Similarity=-0.014 Sum_probs=20.9
Q ss_pred hHHHHHHHHHhcCCcEEEEeccCCcc
Q 030516 105 ARNILCEAVEKHHASILVVGSHGYGA 130 (176)
Q Consensus 105 ~~~~I~~~a~~~~~DlIV~Gs~g~~~ 130 (176)
....+.+..++.++|+||+..-.+--
T Consensus 148 ~e~~~~~~l~~~~~Dlivlagym~il 173 (280)
T TIGR00655 148 HEKRQLELLKQYQVDLVVLAKYMQIL 173 (280)
T ss_pred hHHHHHHHHHHhCCCEEEEeCchhhC
Confidence 35678899999999999999776643
No 216
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=23.65 E-value=4.5e+02 Score=22.18 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=21.6
Q ss_pred hHHHHHHHHHhcCCcEEEEeccCCc
Q 030516 105 ARNILCEAVEKHHASILVVGSHGYG 129 (176)
Q Consensus 105 ~~~~I~~~a~~~~~DlIV~Gs~g~~ 129 (176)
....+.++|++.+++.|+-|+.+.+
T Consensus 94 i~~~l~~~A~~~Ga~~VA~G~t~~g 118 (385)
T cd01999 94 IAKALVEVAKEEGADAVAHGCTGKG 118 (385)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCC
Confidence 4677799999999999999998753
No 217
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=23.65 E-value=64 Score=23.39 Aligned_cols=46 Identities=15% Similarity=0.114 Sum_probs=27.3
Q ss_pred cCCcEEEEeccCCcccchhcccccchhhhheeeccc---cccccccCcccce
Q 030516 116 HHASILVVGSHGYGAIKRYKSTISCFIWYLIFSRVE---LGMVNCFGYYSYL 164 (176)
Q Consensus 116 ~~~DlIV~Gs~g~~~l~~~l~gvs~~~~~~~~~~~~---~~~~~~~~~~~~~ 164 (176)
.+.|++++|--.....- -.++ .....-.|.+.+ ++|.++||+|.+.
T Consensus 121 ~~~~~~i~GH~HP~~~~--~~~~-~~~k~pcf~~~~~~~~~vlPaf~~~~~g 169 (172)
T cd07391 121 LDAELVIIGHEHPAIRL--RDGG-ASLKLPCFLRGEGNDILVLPAFGPLTGG 169 (172)
T ss_pred CCCCEEEEccCCCcEEE--EcCc-eEEEEeEEEEcCCCCEEEECCCCCccCC
Confidence 46788888866643221 1122 223334444455 8999999998764
No 218
>COG1697 DNA topoisomerase VI, subunit A [DNA replication, recombination, and repair]
Probab=23.47 E-value=1.1e+02 Score=25.51 Aligned_cols=60 Identities=13% Similarity=0.198 Sum_probs=40.5
Q ss_pred EcCChHHHHHHHHHhcCCcEEEEeccCCcc--cchhcccccchhhhheeeccccccc---cccCcccceee
Q 030516 101 VEGDARNILCEAVEKHHASILVVGSHGYGA--IKRYKSTISCFIWYLIFSRVELGMV---NCFGYYSYLSI 166 (176)
Q Consensus 101 ~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~--l~~~l~gvs~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 166 (176)
..+...+.|++..-....+.|+++..|... .++++.-..+.+ +.||++. +|+|||=|+.+
T Consensus 190 Ek~avf~rLv~e~~~~k~nailVt~KGqP~raTRrflkrL~eel------~lpv~vftDgDPyG~~Iy~~~ 254 (356)
T COG1697 190 EKDAVFQRLVEEGFWEKENAILVTLKGQPDRATRRFLKRLNEEL------DLPVYVFTDGDPYGWYIYSVY 254 (356)
T ss_pred echHHHHHHHHhhhhhhcCeEEEecCCCccHHHHHHHHHHHHHh------CCCEEEEecCCCCEEEEEEEE
Confidence 335578888888888889999999888743 344443223322 7788876 57777777654
No 219
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=23.36 E-value=3e+02 Score=23.90 Aligned_cols=53 Identities=8% Similarity=0.122 Sum_probs=27.7
Q ss_pred HHHHHhhhcCCcceEEEEEcCC-hHHHHHHHHHhcCCcEEEEeccCCcccchhccc
Q 030516 83 EAKEICSSKSVHDFVVEVVEGD-ARNILCEAVEKHHASILVVGSHGYGAIKRYKST 137 (176)
Q Consensus 83 ~~~~~~~~~~~~~v~~~v~~G~-~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~g 137 (176)
+++..+...+. ++++...... -+..+++.+...++|.||+ .-|-|.+.+.+.|
T Consensus 134 ~v~~~L~~~gi-~~~v~~T~~~ghA~~la~~~~~~~~D~VV~-vGGDGTlnEVvNG 187 (481)
T PLN02958 134 VVKPLLEDADI-QLTIQETKYQLHAKEVVRTMDLSKYDGIVC-VSGDGILVEVVNG 187 (481)
T ss_pred HHHHHHHHcCC-eEEEEeccCccHHHHHHHHhhhcCCCEEEE-EcCCCHHHHHHHH
Confidence 34445555553 4555444422 3455555555567786654 4455556665544
No 220
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=23.27 E-value=2e+02 Score=21.82 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=24.3
Q ss_pred EEEEEcCChHHHHHHHHHhc---CCcEEEEeccCC
Q 030516 97 VVEVVEGDARNILCEAVEKH---HASILVVGSHGY 128 (176)
Q Consensus 97 ~~~v~~G~~~~~I~~~a~~~---~~DlIV~Gs~g~ 128 (176)
.+.+..|+..+.|.+...+. ..|+|.+-.-..
T Consensus 98 ~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~K~ 132 (205)
T PF01596_consen 98 RIEVIEGDALEVLPELANDGEEGQFDFVFIDADKR 132 (205)
T ss_dssp GEEEEES-HHHHHHHHHHTTTTTSEEEEEEESTGG
T ss_pred cEEEEEeccHhhHHHHHhccCCCceeEEEEccccc
Confidence 35667799999888888765 599999998543
No 221
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=23.07 E-value=1e+02 Score=21.95 Aligned_cols=28 Identities=14% Similarity=0.093 Sum_probs=23.1
Q ss_pred HHHHHHHhcCCcEEEEeccCCcccchhc
Q 030516 108 ILCEAVEKHHASILVVGSHGYGAIKRYK 135 (176)
Q Consensus 108 ~I~~~a~~~~~DlIV~Gs~g~~~l~~~l 135 (176)
-+++++++.+++.+|-|-|..+.+.-.+
T Consensus 73 l~v~~~~~~~a~~ivrGlR~~~DfeyE~ 100 (140)
T PRK13964 73 LTAEIAKKLGANFLIRSARNNIDFQYEI 100 (140)
T ss_pred cHHHHHHHCCCeEEEEecCCCccHHHHH
Confidence 4678999999999999999977776443
No 222
>PLN02173 UDP-glucosyl transferase family protein
Probab=23.05 E-value=1.8e+02 Score=25.01 Aligned_cols=42 Identities=14% Similarity=0.056 Sum_probs=34.1
Q ss_pred CCCCCCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEe
Q 030516 1 MATAETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHAR 48 (176)
Q Consensus 1 m~~~~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~ 48 (176)
|..+..+-+++|+=....-...++.|..|+.+ |.+|++++.-
T Consensus 1 ~~~~~~hvv~~P~paqGHi~P~l~lAk~La~~------G~~vT~v~t~ 42 (449)
T PLN02173 1 MEKMRGHVLAVPFPSQGHITPIRQFCKRLHSK------GFKTTHTLTT 42 (449)
T ss_pred CCCCCcEEEEecCcccccHHHHHHHHHHHHcC------CCEEEEEECC
Confidence 45455677889998888889999999999977 7899998754
No 223
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=22.76 E-value=1.5e+02 Score=17.75 Aligned_cols=26 Identities=4% Similarity=0.023 Sum_probs=20.6
Q ss_pred CEEEEEecCCHhHHHHHHHHHHHhcc
Q 030516 7 QTMVVGIDDSEQSTYALQWTLDHFFA 32 (176)
Q Consensus 7 ~~ILVavD~s~~s~~al~~a~~la~~ 32 (176)
++|.++.|.+...+.+..++.+....
T Consensus 48 ~~Iii~~D~D~~G~~~~~~i~~~l~~ 73 (76)
T smart00493 48 KEVILATDPDREGEAIAWKLAELLKP 73 (76)
T ss_pred CEEEEEcCCChhHHHHHHHHHHHhhh
Confidence 56999999999988888777766554
No 224
>PRK09875 putative hydrolase; Provisional
Probab=22.66 E-value=2.8e+02 Score=22.32 Aligned_cols=50 Identities=12% Similarity=0.031 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCC--cEEEEeccCC
Q 030516 78 ARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHA--SILVVGSHGY 128 (176)
Q Consensus 78 ~~~l~~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~--DlIV~Gs~g~ 128 (176)
++.++.+.....+.+ ..+.++...|+.+..+++.+++.++ +-||+|....
T Consensus 138 ~kvl~Aaa~a~~~TG-~pi~~Ht~~~~~g~e~l~il~e~Gvd~~rvvi~H~d~ 189 (292)
T PRK09875 138 EKVFIAAALAHNQTG-RPISTHTSFSTMGLEQLALLQAHGVDLSRVTVGHCDL 189 (292)
T ss_pred HHHHHHHHHHHHHHC-CcEEEcCCCccchHHHHHHHHHcCcCcceEEEeCCCC
Confidence 344444333333334 3477776667667777899999988 8899998854
No 225
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=22.51 E-value=3.3e+02 Score=20.15 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=19.2
Q ss_pred HHHHHHHHhcCCcEEEEeccCCc
Q 030516 107 NILCEAVEKHHASILVVGSHGYG 129 (176)
Q Consensus 107 ~~I~~~a~~~~~DlIV~Gs~g~~ 129 (176)
..+..+|++++++.|+.|.+...
T Consensus 101 ~~a~~~A~~~g~~~v~~G~~~~d 123 (201)
T TIGR00364 101 SIAASYAEALGAEAVITGVCETD 123 (201)
T ss_pred HHHHHHHHHCCCCEEEEEeccCc
Confidence 45678999999999999987644
No 226
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=22.38 E-value=2.2e+02 Score=21.70 Aligned_cols=30 Identities=17% Similarity=0.125 Sum_probs=24.3
Q ss_pred CChHHHHHHHHHhcCCcEEEEeccCCcccc
Q 030516 103 GDARNILCEAVEKHHASILVVGSHGYGAIK 132 (176)
Q Consensus 103 G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~ 132 (176)
.-|.+.+++.++++++|+|.+.........
T Consensus 125 ~vp~e~~v~~~~~~~~~~V~lS~~~~~~~~ 154 (213)
T cd02069 125 MVPIEKILEAAKEHKADIIGLSGLLVPSLD 154 (213)
T ss_pred CCCHHHHHHHHHHcCCCEEEEccchhccHH
Confidence 449999999999999999999866554443
No 227
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=22.29 E-value=46 Score=25.18 Aligned_cols=45 Identities=20% Similarity=0.316 Sum_probs=30.7
Q ss_pred CCcEEEEeccCCcccchhcccccchhhhhe-eeccccccccccCccccee
Q 030516 117 HASILVVGSHGYGAIKRYKSTISCFIWYLI-FSRVELGMVNCFGYYSYLS 165 (176)
Q Consensus 117 ~~DlIV~Gs~g~~~l~~~l~gvs~~~~~~~-~~~~~~~~~~~~~~~~~~~ 165 (176)
.-.+.|+|+.|.|... .+...+..++ ..+.++.++++-|+|....
T Consensus 23 ~~H~~I~G~TGsGKS~----~~~~ll~~l~~~~~~~~ii~D~~GEY~~~~ 68 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSN----TVKVLLEELLKKKGAKVIIFDPHGEYASLF 68 (229)
T ss_pred cceEEEECCCCCCHHH----HHHHHHHHHHhcCCCCEEEEcCCCcchhhh
Confidence 3456688888776543 2344556666 7778888888888877655
No 228
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=22.20 E-value=2.9e+02 Score=21.39 Aligned_cols=53 Identities=11% Similarity=0.105 Sum_probs=33.6
Q ss_pred HHHHHHHHhcCCcEEEEeccCCcccchhcccccchhhhheeeccccccccccCcccceeeee
Q 030516 107 NILCEAVEKHHASILVVGSHGYGAIKRYKSTISCFIWYLIFSRVELGMVNCFGYYSYLSIIK 168 (176)
Q Consensus 107 ~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~gvs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (176)
+.+.++.+ ++|+||-++-... .+.+ .+++|.+. ++|+..-...|++.+..+|.
T Consensus 106 ~~~~~~~~--~~DlVvd~~D~~~-~r~~---ln~~~~~~---~ip~v~~~~~g~~G~v~~~~ 158 (240)
T TIGR02355 106 AELAALIA--EHDIVVDCTDNVE-VRNQ---LNRQCFAA---KVPLVSGAAIRMEGQVSVFT 158 (240)
T ss_pred HHHHHHhh--cCCEEEEcCCCHH-HHHH---HHHHHHHc---CCCEEEEEecccEeEEEEEe
Confidence 34555666 8999998887653 2322 24555543 56666666678888877765
No 229
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=22.03 E-value=62 Score=20.52 Aligned_cols=32 Identities=19% Similarity=0.404 Sum_probs=23.1
Q ss_pred ChHHHHHHHHHhcCCcEEEEeccCCcccchhc
Q 030516 104 DARNILCEAVEKHHASILVVGSHGYGAIKRYK 135 (176)
Q Consensus 104 ~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l 135 (176)
.....+.+...++++|+||.|.-|.+....+.
T Consensus 40 ~~~~~~~~~l~~~~v~~li~~~iG~~~~~~L~ 71 (94)
T PF02579_consen 40 GGGDKIAKFLAEEGVDVLICGGIGEGAFRALK 71 (94)
T ss_dssp CHSTHHHHHHHHTTESEEEESCSCHHHHHHHH
T ss_pred ccchhHHHHHHHcCCCEEEEeCCCHHHHHHHH
Confidence 45666777777788888888888877666554
No 230
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=22.00 E-value=1.8e+02 Score=24.00 Aligned_cols=54 Identities=11% Similarity=0.207 Sum_probs=35.4
Q ss_pred HHHHHHHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcccchhccc
Q 030516 80 VVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKST 137 (176)
Q Consensus 80 ~l~~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~g 137 (176)
.+..+...+++.| .++.+..+.- +.+.+.++..+.+.+++|.++.+...+++.+
T Consensus 15 fFk~~I~eL~~~G-heV~it~R~~---~~~~~LL~~yg~~y~~iG~~g~~~~~Kl~~~ 68 (335)
T PF04007_consen 15 FFKNIIRELEKRG-HEVLITARDK---DETEELLDLYGIDYIVIGKHGDSLYGKLLES 68 (335)
T ss_pred HHHHHHHHHHhCC-CEEEEEEecc---chHHHHHHHcCCCeEEEcCCCCCHHHHHHHH
Confidence 5566666666665 2344444433 4566677788999999999997666555543
No 231
>PRK08349 hypothetical protein; Validated
Probab=21.97 E-value=2.3e+02 Score=20.99 Aligned_cols=34 Identities=21% Similarity=0.157 Sum_probs=26.1
Q ss_pred CEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEec
Q 030516 7 QTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (176)
Q Consensus 7 ~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~ 49 (176)
+++++++++.-+|.-++.++.+ + |.+|+.+|+-.
T Consensus 1 ~~~vvllSGG~DS~v~~~~l~~---~------g~~v~av~~d~ 34 (198)
T PRK08349 1 MKAVALLSSGIDSPVAIYLMLR---R------GVEVYPVHFRQ 34 (198)
T ss_pred CcEEEEccCChhHHHHHHHHHH---c------CCeEEEEEEeC
Confidence 3689999999999888865542 3 56899999854
No 232
>PF05902 4_1_CTD: 4.1 protein C-terminal domain (CTD); InterPro: IPR008379 There is a unique sequence domain at the C terminus of all known 4.1 proteins, known as the C-terminal domain (CTD). Mammalian CTDs are associated with a growing number of protein-protein interactions, although such activities have yet to be associated with invertebrate CTDs. Mammalian CTDs are generally defined by sequence alignment as encoded by exons 18-21. Comparison of known vertebrate 4.1 proteins with invertebrate 4.1 proteins indicates that mammalian 4.1 exon 19 represents a vertebrate adaptation that extends the sequence of the CTD with a Ser/Thr-rich sequence. The CTD was first described as a 22/24 kDa domain by chymotryptic digestion of erythrocyte 4.1 (4.1R). CTD is thought to represent an independent folding structure which has gained function since the divergence of vertebrates from invertebrates [].; GO: 0003779 actin binding, 0005198 structural molecule activity, 0005856 cytoskeleton
Probab=21.94 E-value=2.8e+02 Score=19.17 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=31.2
Q ss_pred CCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEE
Q 030516 6 TQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHA 47 (176)
Q Consensus 6 ~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv 47 (176)
=++|.+-=|..-+...||..|.+-|++ ++++..|+=+-|
T Consensus 70 EKRIvITGD~DIDhDqaLa~aI~eAk~---q~Pdm~Vtkvvv 108 (114)
T PF05902_consen 70 EKRIVITGDADIDHDQALAQAIKEAKE---QHPDMSVTKVVV 108 (114)
T ss_pred EEEEEEecCCCcchHHHHHHHHHHHHH---hCCCceEEEEEE
Confidence 367888888887889999999999999 678777765544
No 233
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=21.84 E-value=4.7e+02 Score=21.77 Aligned_cols=29 Identities=7% Similarity=0.058 Sum_probs=23.4
Q ss_pred cCChHHHHHHHHHhcCCcEEEEeccCCcc
Q 030516 102 EGDARNILCEAVEKHHASILVVGSHGYGA 130 (176)
Q Consensus 102 ~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~ 130 (176)
....+..+++.+++.+.+.+.+|+.+-..
T Consensus 243 ~~~~~~~l~~~a~~~g~~~~wigs~~w~~ 271 (403)
T cd06361 243 RQFHVFLLFNKAIERNINKVWIASDNWST 271 (403)
T ss_pred ChHHHHHHHHHHHHhCCCeEEEEECcccC
Confidence 34477889999999999999999887654
No 234
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=21.79 E-value=1.9e+02 Score=17.57 Aligned_cols=36 Identities=8% Similarity=0.053 Sum_probs=24.4
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEE
Q 030516 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVH 46 (176)
Q Consensus 5 ~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvh 46 (176)
.-+.+++.++.+..+...++.+ +.+++. |+++..+.
T Consensus 46 ~~~d~~i~iS~sg~t~~~~~~~-~~a~~~-----g~~ii~it 81 (87)
T cd04795 46 RKGDVVIALSYSGRTEELLAAL-EIAKEL-----GIPVIAIT 81 (87)
T ss_pred CCCCEEEEEECCCCCHHHHHHH-HHHHHc-----CCeEEEEe
Confidence 3467889998888877766644 555552 67776664
No 235
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=21.77 E-value=4.1e+02 Score=21.06 Aligned_cols=86 Identities=15% Similarity=0.117 Sum_probs=48.7
Q ss_pred HhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHHHhhhcCCcce
Q 030516 17 EQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDF 96 (176)
Q Consensus 17 ~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v 96 (176)
++...++++|.++... +.++.....+.+......+.+. .++.++.+++.+.+.+. .+
T Consensus 38 e~~~~~~~~A~~lk~~------g~~~~r~~~~kpRTs~~s~~G~----------------g~~gl~~l~~~~~~~Gl-~~ 94 (266)
T PRK13398 38 ESEEQMVKVAEKLKEL------GVHMLRGGAFKPRTSPYSFQGL----------------GEEGLKILKEVGDKYNL-PV 94 (266)
T ss_pred CCHHHHHHHHHHHHHc------CCCEEEEeeecCCCCCCccCCc----------------HHHHHHHHHHHHHHcCC-CE
Confidence 4556778888888776 6788888888755432222111 13344445555566663 45
Q ss_pred EEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcc
Q 030516 97 VVEVVEGDARNILCEAVEKHHASILVVGSHGYGA 130 (176)
Q Consensus 97 ~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~ 130 (176)
-+.+..-...+ ++.+. +|++-+|++.-..
T Consensus 95 ~te~~d~~~~~----~l~~~-vd~~kIga~~~~n 123 (266)
T PRK13398 95 VTEVMDTRDVE----EVADY-ADMLQIGSRNMQN 123 (266)
T ss_pred EEeeCChhhHH----HHHHh-CCEEEECcccccC
Confidence 55554443333 33333 6777777776543
No 236
>PRK08223 hypothetical protein; Validated
Probab=21.76 E-value=2.3e+02 Score=22.86 Aligned_cols=58 Identities=9% Similarity=-0.046 Sum_probs=36.0
Q ss_pred HHHHHHhcCCcEEEEeccCCcccchhcccccchhhhheeeccccccccccCcccceeeeeeeeee
Q 030516 109 LCEAVEKHHASILVVGSHGYGAIKRYKSTISCFIWYLIFSRVELGMVNCFGYYSYLSIIKRTQIC 173 (176)
Q Consensus 109 I~~~a~~~~~DlIV~Gs~g~~~l~~~l~gvs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (176)
+.++.+ ++|+||=++-....-.+.+ +++.|... ++|+..-.+.|++-+++.|.|...|
T Consensus 111 ~~~ll~--~~DlVvD~~D~~~~~~r~~--ln~~c~~~---~iP~V~~~~~g~~gqv~v~~p~~p~ 168 (287)
T PRK08223 111 ADAFLD--GVDVYVDGLDFFEFDARRL--VFAACQQR---GIPALTAAPLGMGTALLVFDPGGMS 168 (287)
T ss_pred HHHHHh--CCCEEEECCCCCcHHHHHH--HHHHHHHc---CCCEEEEeccCCeEEEEEEcCCCCc
Confidence 445555 8999985554332112222 34555554 5777777788888888888876555
No 237
>COG2183 Tex Transcriptional accessory protein [Transcription]
Probab=21.76 E-value=94 Score=28.70 Aligned_cols=58 Identities=14% Similarity=0.066 Sum_probs=46.3
Q ss_pred HHHHHHHHHhcCCcEEEEeccCCcccchhcccccchhhhheeeccccccccccCccccee
Q 030516 106 RNILCEAVEKHHASILVVGSHGYGAIKRYKSTISCFIWYLIFSRVELGMVNCFGYYSYLS 165 (176)
Q Consensus 106 ~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~gvs~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (176)
...|...++++++++|.+|.-+.+.-.+-|- .+.+..+-..++...||+--|-|.|+.
T Consensus 373 ~~~l~~l~~~~~Ve~iaIGngTaSrete~fv--~~vl~~~~~~~~~~viVsEagAsvYsa 430 (780)
T COG2183 373 EATLKDLIRKYKVELIAIGNGTASRETEKFV--ADVLKELPKEKVLKVIVSEAGASVYSA 430 (780)
T ss_pred HHHHHHHHHHhCceEEEEecCCcchhHHHHH--HHHHHhccCCCCcEEEEcccccchhcc
Confidence 4556788899999999999988877766552 355556667889999999999999985
No 238
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=21.74 E-value=3.2e+02 Score=23.28 Aligned_cols=48 Identities=17% Similarity=0.116 Sum_probs=32.8
Q ss_pred hHHHHHHHHHhcCCcEEEEeccCCcccchhcccccchhhhheeeccccccccccC
Q 030516 105 ARNILCEAVEKHHASILVVGSHGYGAIKRYKSTISCFIWYLIFSRVELGMVNCFG 159 (176)
Q Consensus 105 ~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~gvs~~~~~~~~~~~~~~~~~~~~ 159 (176)
-.+.+.+.+++.++|.||+-.+.-+.-..++.+ +...++||++.+...
T Consensus 51 ~~~~~~~~~~~~~~d~ii~~~~tf~~~~~~~~~-------~~~~~~Pvll~a~~~ 98 (452)
T cd00578 51 EARKAAEEFNEANCDGLIVWMHTFGPAKMWIAG-------LSELRKPVLLLATQF 98 (452)
T ss_pred HHHHHHHHHhhcCCcEEEEcccccccHHHHHHH-------HHhcCCCEEEEeCCC
Confidence 466777888888999999877666554444332 223478988877654
No 239
>PRK13055 putative lipid kinase; Reviewed
Probab=21.63 E-value=4.3e+02 Score=21.48 Aligned_cols=55 Identities=9% Similarity=0.113 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhhcCCcceEEEEEcC--ChHHHHHHHHHhcCCcEEEEeccCCcccchhc
Q 030516 79 RVVEEAKEICSSKSVHDFVVEVVEG--DARNILCEAVEKHHASILVVGSHGYGAIKRYK 135 (176)
Q Consensus 79 ~~l~~~~~~~~~~~~~~v~~~v~~G--~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l 135 (176)
+...++.+.+.+.+. ++++..... .-++.+.+.+.+.++|+||+. -|-|.+.+.+
T Consensus 20 ~~~~~i~~~l~~~g~-~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~-GGDGTl~evv 76 (334)
T PRK13055 20 KNVADILDILEQAGY-ETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAA-GGDGTINEVV 76 (334)
T ss_pred HHHHHHHHHHHHcCC-eEEEEEeecCCccHHHHHHHHhhcCCCEEEEE-CCCCHHHHHH
Confidence 344555556666553 455544432 235556666666678876654 3444455444
No 240
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=21.54 E-value=3e+02 Score=23.36 Aligned_cols=81 Identities=15% Similarity=0.168 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhhhcCCcceEEEEEcCChHHHHHHHHHhc-CCcEEEEeccCCcccchhcccc-------cchhhhheeec
Q 030516 78 ARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKH-HASILVVGSHGYGAIKRYKSTI-------SCFIWYLIFSR 149 (176)
Q Consensus 78 ~~~l~~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~-~~DlIV~Gs~g~~~l~~~l~gv-------s~~~~~~~~~~ 149 (176)
+..++.+++.+.-.+...-....+.+|.-+-+-++.++. ..|+||+-....+.-++..+++ ...+..++-..
T Consensus 250 ~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pg 329 (393)
T COG1092 250 KRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPG 329 (393)
T ss_pred HHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCC
Confidence 455565556655455333457788999999988888876 9999999977665444433322 23444455444
Q ss_pred ccccccccc
Q 030516 150 VELGMVNCF 158 (176)
Q Consensus 150 ~~~~~~~~~ 158 (176)
.-++...|.
T Consensus 330 G~l~~~s~~ 338 (393)
T COG1092 330 GTLVTSSCS 338 (393)
T ss_pred CEEEEEecC
Confidence 444444443
No 241
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=21.48 E-value=2.5e+02 Score=20.99 Aligned_cols=63 Identities=11% Similarity=0.179 Sum_probs=37.1
Q ss_pred eEEEEEcCCh---HHHHHHHHHhcCCcEEEEeccCCcccchhcccccchhhhheeeccccccccccCcccceeee
Q 030516 96 FVVEVVEGDA---RNILCEAVEKHHASILVVGSHGYGAIKRYKSTISCFIWYLIFSRVELGMVNCFGYYSYLSII 167 (176)
Q Consensus 96 v~~~v~~G~~---~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~gvs~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (176)
++++.....+ .+...++.+ ++|+||...... ..... .+++|... +.|+....+.|.|.|.-+.
T Consensus 91 v~i~~~~~~~~~~~~~~~~~~~--~~dvVi~~~d~~-~~~~~---ln~~c~~~---~ip~i~~~~~G~~G~v~~~ 156 (198)
T cd01485 91 VKLSIVEEDSLSNDSNIEEYLQ--KFTLVIATEENY-ERTAK---VNDVCRKH---HIPFISCATYGLIGYAFFD 156 (198)
T ss_pred CEEEEEecccccchhhHHHHHh--CCCEEEECCCCH-HHHHH---HHHHHHHc---CCCEEEEEeecCEEEEEEc
Confidence 4444444332 344556666 789888775442 22222 35666653 5788888888888886543
No 242
>PRK00074 guaA GMP synthase; Reviewed
Probab=21.33 E-value=5.6e+02 Score=22.42 Aligned_cols=34 Identities=15% Similarity=0.178 Sum_probs=26.0
Q ss_pred CEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEe
Q 030516 7 QTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHAR 48 (176)
Q Consensus 7 ~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~ 48 (176)
++++|++.+.-+|.-++..+.+.. |.+++.+|+-
T Consensus 216 ~~vlva~SGGvDS~vll~ll~~~l--------g~~v~av~vd 249 (511)
T PRK00074 216 KKVILGLSGGVDSSVAAVLLHKAI--------GDQLTCVFVD 249 (511)
T ss_pred CcEEEEeCCCccHHHHHHHHHHHh--------CCceEEEEEe
Confidence 789999999999987777665432 2378888883
No 243
>PLN02476 O-methyltransferase
Probab=21.12 E-value=3.2e+02 Score=21.90 Aligned_cols=45 Identities=20% Similarity=0.144 Sum_probs=29.8
Q ss_pred HHHHHhhhcCCcceEEEEEcCChHHHHHHHHHh---cCCcEEEEeccCC
Q 030516 83 EAKEICSSKSVHDFVVEVVEGDARNILCEAVEK---HHASILVVGSHGY 128 (176)
Q Consensus 83 ~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~---~~~DlIV~Gs~g~ 128 (176)
.+++.+++.+. .-.+.+..|+..+.+.+...+ ...|+|++.....
T Consensus 158 ~Ar~n~~~aGl-~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~K~ 205 (278)
T PLN02476 158 VAKRYYELAGV-SHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDADKR 205 (278)
T ss_pred HHHHHHHHcCC-CCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCCHH
Confidence 33444444543 234677889988888776532 4799999998753
No 244
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.81 E-value=3e+02 Score=20.71 Aligned_cols=46 Identities=22% Similarity=0.215 Sum_probs=29.7
Q ss_pred HHHHHhhhcCCcceEEEEEcCC-hHHHHHHHHHhcCC-cEEEEeccCCcc
Q 030516 83 EAKEICSSKSVHDFVVEVVEGD-ARNILCEAVEKHHA-SILVVGSHGYGA 130 (176)
Q Consensus 83 ~~~~~~~~~~~~~v~~~v~~G~-~~~~I~~~a~~~~~-DlIV~Gs~g~~~ 130 (176)
.+.+.+...+ ..+..+..++ .+..+++..++.+. |+.|+|--+...
T Consensus 169 ~~~~~l~~~~--~~~ai~~~~d~~a~~~~~al~~~g~~di~vvg~d~~~~ 216 (267)
T cd06322 169 AAQNILQANP--DLDGIFAFGDDAALGAVSAIKAAGRDNVKVIGFDGMPE 216 (267)
T ss_pred HHHHHHHhCC--CCCEEEEcCCcHHHHHHHHHHHCCCCCeEEEEecCCHH
Confidence 3344554444 2455566655 67788888888887 888888766533
No 245
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=20.68 E-value=3.3e+02 Score=21.14 Aligned_cols=66 Identities=5% Similarity=0.079 Sum_probs=38.8
Q ss_pred eEEEEEcCCh-HHHHHHHHHhcCCcEEEEeccCCcccchhcccccchhhhheeeccccccccccCcccceeeeeee
Q 030516 96 FVVEVVEGDA-RNILCEAVEKHHASILVVGSHGYGAIKRYKSTISCFIWYLIFSRVELGMVNCFGYYSYLSIIKRT 170 (176)
Q Consensus 96 v~~~v~~G~~-~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~gvs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (176)
+++....... .+.+.+..+ ++|+||.++-... .+.+ ++++|.+. +.|+......|++.+...|.|.
T Consensus 102 v~i~~~~~~i~~~~~~~~~~--~~DiVi~~~D~~~-~r~~---ln~~~~~~---~ip~v~~~~~g~~G~v~~~~~~ 168 (245)
T PRK05690 102 IAIETINARLDDDELAALIA--GHDLVLDCTDNVA-TRNQ---LNRACFAA---KKPLVSGAAIRMEGQVTVFTYQ 168 (245)
T ss_pred CEEEEEeccCCHHHHHHHHh--cCCEEEecCCCHH-HHHH---HHHHHHHh---CCEEEEeeeccCCceEEEEecC
Confidence 3444344332 234445556 8999998876553 2322 34555553 5666666677888888888753
No 246
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=20.63 E-value=3.6e+02 Score=21.98 Aligned_cols=11 Identities=18% Similarity=0.407 Sum_probs=5.1
Q ss_pred CcEEEEeccCC
Q 030516 118 ASILVVGSHGY 128 (176)
Q Consensus 118 ~DlIV~Gs~g~ 128 (176)
+|.|++|+++-
T Consensus 188 vd~VivGad~I 198 (301)
T COG1184 188 VDKVLVGADAI 198 (301)
T ss_pred CCEEEECccce
Confidence 44444444443
No 247
>PRK03972 ribosomal biogenesis protein; Validated
Probab=20.62 E-value=4e+02 Score=20.48 Aligned_cols=73 Identities=11% Similarity=0.072 Sum_probs=39.1
Q ss_pred HHHHHHHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcccchhc-ccccchhhhheeecccccccccc
Q 030516 80 VVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYK-STISCFIWYLIFSRVELGMVNCF 158 (176)
Q Consensus 80 ~l~~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l-~gvs~~~~~~~~~~~~~~~~~~~ 158 (176)
..+.++.++++.+.. + .-..+...+.|. -+...-+++|++.|.++..-.+. +.++ =-++-
T Consensus 119 ~~~~Ak~lA~eLgi~-y--V~R~k~Sl~~L~--~~~~~d~vLVV~~~~~~~~~~~~~~~~~--------------~~~~~ 179 (208)
T PRK03972 119 HMAFAQVFAELTGGK-F--VPRGGKSLQDIA--DKYNTDVLGVIERHPRGMAVNFYRLDVT--------------KERPV 179 (208)
T ss_pred HHHHHHHHHHHhCCc-e--eCcCCcCHHHHH--hhhcCceEEEEecCCCceEEEEEEeccc--------------ccccc
Confidence 344555566565532 2 223333444444 22336678889999987644433 2333 24555
Q ss_pred Ccccceeeeeeee
Q 030516 159 GYYSYLSIIKRTQ 171 (176)
Q Consensus 159 ~~~~~~~~~~~~~ 171 (176)
|++-+.+|++-.|
T Consensus 180 ~~~~~~~~~~~~~ 192 (208)
T PRK03972 180 GPLIFVKIWIMED 192 (208)
T ss_pred CCcEEEEEEEecc
Confidence 6777777776443
No 248
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=20.47 E-value=2.3e+02 Score=18.91 Aligned_cols=39 Identities=13% Similarity=0.232 Sum_probs=28.8
Q ss_pred CCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecC
Q 030516 6 TQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPS 50 (176)
Q Consensus 6 ~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~ 50 (176)
-+.+++.++.+..+...++.+.. |+++ |+++..+.-.+.
T Consensus 47 ~~d~vi~iS~sG~t~~~~~~~~~-a~~~-----g~~vi~iT~~~~ 85 (128)
T cd05014 47 PGDVVIAISNSGETDELLNLLPH-LKRR-----GAPIIAITGNPN 85 (128)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHH-HHHC-----CCeEEEEeCCCC
Confidence 46789999999888888887755 5552 778888876443
No 249
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=20.41 E-value=3.7e+02 Score=20.04 Aligned_cols=33 Identities=24% Similarity=0.301 Sum_probs=24.7
Q ss_pred EEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEec
Q 030516 8 TMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (176)
Q Consensus 8 ~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~ 49 (176)
++++++.+..+|..++.++.+. |-++..++...
T Consensus 1 kv~v~~SGGkDS~~al~~a~~~---------G~~v~~l~~~~ 33 (194)
T cd01994 1 KVVALISGGKDSCYALYRALEE---------GHEVVALLNLT 33 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHHc---------CCEEEEEEEEe
Confidence 4789999999999999888772 33666666543
No 250
>PRK14852 hypothetical protein; Provisional
Probab=20.39 E-value=3.1e+02 Score=26.36 Aligned_cols=70 Identities=14% Similarity=0.114 Sum_probs=47.4
Q ss_pred eEEEEEc-CChHHHHHHHHHhcCCcEEEEeccCCc-ccchhcccccchhhhheeeccccccccccCcccceeeeeeeeee
Q 030516 96 FVVEVVE-GDARNILCEAVEKHHASILVVGSHGYG-AIKRYKSTISCFIWYLIFSRVELGMVNCFGYYSYLSIIKRTQIC 173 (176)
Q Consensus 96 v~~~v~~-G~~~~~I~~~a~~~~~DlIV~Gs~g~~-~l~~~l~gvs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (176)
+++.+.. +-..+.+-++.+ ++|+||-+.-... ..++++. +.|. -.++|+.+..+.|++.++..|.|...|
T Consensus 402 v~I~~~~~~I~~en~~~fl~--~~DiVVDa~D~~~~~~rr~l~---~~c~---~~~IP~I~ag~~G~~g~v~v~~p~~~~ 473 (989)
T PRK14852 402 LDIRSFPEGVAAETIDAFLK--DVDLLVDGIDFFALDIRRRLF---NRAL---ELGIPVITAGPLGYSCALLVFMPGGMN 473 (989)
T ss_pred CeEEEEecCCCHHHHHHHhh--CCCEEEECCCCccHHHHHHHH---HHHH---HcCCCEEEeeccccCeeEEEEcCCCCC
Confidence 5555553 334456666777 8999998776643 2344443 2343 447999999999999999999876543
No 251
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=20.28 E-value=4e+02 Score=23.51 Aligned_cols=68 Identities=9% Similarity=0.228 Sum_probs=36.3
Q ss_pred HHHhhhcCCcceEEEEEcCChHHHHHHH---HHhcCCcEEEEeccCCcccchhcccccchhhhheeeccccccccccCcc
Q 030516 85 KEICSSKSVHDFVVEVVEGDARNILCEA---VEKHHASILVVGSHGYGAIKRYKSTISCFIWYLIFSRVELGMVNCFGYY 161 (176)
Q Consensus 85 ~~~~~~~~~~~v~~~v~~G~~~~~I~~~---a~~~~~DlIV~Gs~g~~~l~~~l~gvs~~~~~~~~~~~~~~~~~~~~~~ 161 (176)
.+.+.+++. ..++.+..|+..+++... ..+.++|+||-. | |+.+++.+.. .+||..|+.-| |
T Consensus 20 ~~i~~~~~~-~~~~~v~~~~~~~~~~~a~~~~~~~~~dviIsr----G-------~ta~~i~~~~--~iPVv~i~~s~-~ 84 (526)
T TIGR02329 20 RDIAPEFDH-RANITPIQLGFEDAVREIRQRLGAERCDVVVAG----G-------SNGAYLKSRL--SLPVIVIKPTG-F 84 (526)
T ss_pred HHHHHhCCC-CceEEEEeccHHHHHHHHHHHHHhCCCcEEEEC----c-------hHHHHHHHhC--CCCEEEecCCh-h
Confidence 344444443 255666777765555433 556789988732 2 2333444422 46776666555 4
Q ss_pred cceeee
Q 030516 162 SYLSII 167 (176)
Q Consensus 162 ~~~~~~ 167 (176)
|.+..+
T Consensus 85 Dil~al 90 (526)
T TIGR02329 85 DVMQAL 90 (526)
T ss_pred hHHHHH
Confidence 555443
No 252
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=20.05 E-value=2.5e+02 Score=23.26 Aligned_cols=47 Identities=17% Similarity=0.167 Sum_probs=27.5
Q ss_pred HHHHHHHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccC
Q 030516 80 VVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHG 127 (176)
Q Consensus 80 ~l~~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g 127 (176)
+++.+.......+. ++-++..........++.+.+.++|.|+++.+|
T Consensus 174 ~le~i~~i~~~~~v-PVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg~G 220 (352)
T PRK05437 174 WLDNIAEIVSALPV-PVIVKEVGFGISKETAKRLADAGVKAIDVAGAG 220 (352)
T ss_pred HHHHHHHHHHhhCC-CEEEEeCCCCCcHHHHHHHHHcCCCEEEECCCC
Confidence 34444444433332 344544422234567777888899999998776
Done!