Query 030516
Match_columns 176
No_of_seqs 118 out of 1845
Neff 8.7
Searched_HMMs 29240
Date Tue Mar 26 00:21:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030516.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030516hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s3t_A Nucleotide-binding prot 99.9 5.8E-23 2E-27 146.3 12.0 143 3-156 2-146 (146)
2 3hgm_A Universal stress protei 99.9 6.5E-23 2.2E-27 146.1 11.9 143 5-155 1-147 (147)
3 3fg9_A Protein of universal st 99.9 1.4E-22 4.8E-27 146.2 13.3 142 2-156 11-156 (156)
4 1mjh_A Protein (ATP-binding do 99.9 2.1E-22 7.2E-27 146.0 13.8 148 1-158 1-160 (162)
5 3tnj_A Universal stress protei 99.9 2.9E-22 1E-26 143.4 13.3 145 3-158 3-148 (150)
6 2dum_A Hypothetical protein PH 99.9 1.1E-21 3.6E-26 143.5 14.5 148 4-159 3-158 (170)
7 3dlo_A Universal stress protei 99.9 2.6E-21 8.9E-26 140.1 12.3 130 4-156 22-155 (155)
8 3idf_A USP-like protein; unive 99.9 3.9E-21 1.3E-25 135.7 12.0 136 6-156 1-138 (138)
9 1tq8_A Hypothetical protein RV 99.9 5.5E-21 1.9E-25 139.5 11.3 143 3-159 14-160 (163)
10 2z08_A Universal stress protei 99.8 8.2E-21 2.8E-25 134.1 11.3 135 5-156 1-137 (137)
11 2gm3_A Unknown protein; AT3G01 99.8 1.4E-20 4.9E-25 138.2 10.9 151 3-158 2-164 (175)
12 3olq_A Universal stress protei 99.8 3.3E-20 1.1E-24 147.8 13.0 160 3-172 4-165 (319)
13 3fdx_A Putative filament prote 99.8 6E-20 2.1E-24 130.1 10.5 137 7-156 2-143 (143)
14 3loq_A Universal stress protei 99.8 1.7E-19 5.9E-24 142.5 10.2 155 3-171 19-178 (294)
15 1jmv_A USPA, universal stress 99.8 1E-19 3.6E-24 128.7 7.3 138 5-159 1-140 (141)
16 3mt0_A Uncharacterized protein 99.8 5.7E-19 1.9E-23 139.3 11.2 138 3-172 4-143 (290)
17 3cis_A Uncharacterized protein 99.8 6E-18 2.1E-22 134.6 14.8 154 4-171 17-179 (309)
18 1q77_A Hypothetical protein AQ 99.8 2.3E-18 8E-23 121.4 10.9 133 4-156 2-138 (138)
19 3mt0_A Uncharacterized protein 99.8 2.5E-18 8.6E-23 135.6 11.3 140 5-161 133-280 (290)
20 3ab8_A Putative uncharacterize 99.8 2.7E-18 9.1E-23 133.7 10.4 152 7-171 1-162 (268)
21 3olq_A Universal stress protei 99.8 9.2E-18 3.1E-22 133.6 12.7 147 5-161 155-309 (319)
22 3cis_A Uncharacterized protein 99.7 1.9E-16 6.5E-21 125.9 13.5 136 4-157 169-306 (309)
23 3loq_A Universal stress protei 99.7 2.1E-16 7E-21 124.7 12.6 123 4-158 168-291 (294)
24 3ab8_A Putative uncharacterize 99.5 4.1E-14 1.4E-18 109.9 10.2 115 5-156 153-268 (268)
25 2iel_A Hypothetical protein TT 96.3 0.15 5.2E-06 35.3 13.0 126 7-153 2-131 (138)
26 3a2k_A TRNA(Ile)-lysidine synt 93.7 1.1 3.8E-05 37.2 12.0 99 5-130 17-132 (464)
27 1wy5_A TILS, hypothetical UPF0 92.3 2.4 8.3E-05 33.1 11.6 97 5-129 23-137 (317)
28 2xry_A Deoxyribodipyrimidine p 92.3 0.94 3.2E-05 37.7 9.6 93 14-128 46-138 (482)
29 3umv_A Deoxyribodipyrimidine p 91.4 1.1 3.6E-05 37.8 9.0 90 14-124 47-136 (506)
30 2wq7_A RE11660P; lyase-DNA com 90.8 2.7 9.4E-05 35.5 11.0 101 8-125 30-132 (543)
31 1np7_A DNA photolyase; protein 84.8 14 0.00046 30.7 11.5 102 7-126 6-109 (489)
32 3tvs_A Cryptochrome-1; circadi 83.9 1.6 5.6E-05 37.0 5.5 92 14-125 13-107 (538)
33 4b4k_A N5-carboxyaminoimidazol 79.5 7.3 0.00025 28.1 6.8 57 80-137 37-97 (181)
34 3fy4_A 6-4 photolyase; DNA rep 79.2 7 0.00024 33.1 7.7 107 6-126 4-112 (537)
35 1zun_A Sulfate adenylyltransfe 78.4 17 0.00058 28.5 9.4 37 6-47 46-82 (325)
36 3zqu_A Probable aromatic acid 78.0 3.8 0.00013 30.3 5.1 37 5-47 3-39 (209)
37 2hma_A Probable tRNA (5-methyl 76.4 25 0.00086 28.1 10.0 40 1-49 4-43 (376)
38 2j4d_A Cryptochrome 3, cryptoc 74.7 19 0.00063 30.3 9.1 103 7-126 40-144 (525)
39 1owl_A Photolyase, deoxyribodi 74.6 16 0.00053 30.4 8.6 88 14-124 12-99 (484)
40 2nz2_A Argininosuccinate synth 74.2 33 0.0011 27.9 10.2 36 5-49 4-39 (413)
41 4grd_A N5-CAIR mutase, phospho 73.9 9 0.00031 27.4 5.9 57 80-137 27-87 (173)
42 3kcq_A Phosphoribosylglycinami 73.7 19 0.00065 26.6 8.0 91 3-130 5-95 (215)
43 1efp_B ETF, protein (electron 73.1 7.2 0.00025 29.6 5.7 79 15-129 35-125 (252)
44 3ih5_A Electron transfer flavo 72.7 26 0.00088 25.8 10.8 88 6-129 3-103 (217)
45 1dnp_A DNA photolyase; DNA rep 71.8 5 0.00017 33.3 4.9 92 14-125 10-103 (471)
46 1g63_A Epidermin modifying enz 71.3 4.2 0.00014 29.3 3.8 37 5-47 1-37 (181)
47 1efv_B Electron transfer flavo 71.1 6.5 0.00022 29.9 5.0 77 17-129 40-128 (255)
48 1k92_A Argininosuccinate synth 70.6 44 0.0015 27.6 10.5 37 5-50 9-45 (455)
49 3qjg_A Epidermin biosynthesis 69.9 6.3 0.00022 28.2 4.5 113 5-157 4-118 (175)
50 1iv0_A Hypothetical protein; r 68.4 4.2 0.00014 26.2 3.0 52 105-156 39-92 (98)
51 2c5s_A THII, probable thiamine 67.7 47 0.0016 26.8 12.3 35 6-49 187-221 (413)
52 3g40_A Na-K-CL cotransporter; 67.2 28 0.00094 27.1 7.8 39 7-51 21-59 (294)
53 3lp6_A Phosphoribosylaminoimid 64.5 13 0.00043 26.7 5.0 57 80-137 22-82 (174)
54 1u3d_A Cryptochrome 1 apoprote 63.7 50 0.0017 27.4 9.5 93 9-125 14-109 (509)
55 1p3y_1 MRSD protein; flavoprot 63.6 7.5 0.00026 28.3 3.9 36 5-46 7-42 (194)
56 1o97_C Electron transferring f 62.8 48 0.0016 25.1 9.7 83 12-129 32-124 (264)
57 1sur_A PAPS reductase; assimil 62.6 40 0.0014 24.2 9.8 33 7-48 45-77 (215)
58 1ni5_A Putative cell cycle pro 62.4 15 0.00053 29.9 6.0 40 5-48 12-51 (433)
59 2ejb_A Probable aromatic acid 62.1 14 0.00048 26.7 5.1 34 7-46 2-35 (189)
60 1kor_A Argininosuccinate synth 61.3 63 0.0022 26.1 9.6 35 7-49 1-35 (400)
61 2e0i_A 432AA long hypothetical 60.8 20 0.00069 29.4 6.4 88 14-125 10-97 (440)
62 3rg8_A Phosphoribosylaminoimid 59.2 38 0.0013 23.8 6.7 57 80-137 17-78 (159)
63 3lqk_A Dipicolinate synthase s 59.2 12 0.0004 27.4 4.2 37 4-46 5-42 (201)
64 3g40_A Na-K-CL cotransporter; 57.5 13 0.00045 28.9 4.4 82 19-132 178-259 (294)
65 3dm5_A SRP54, signal recogniti 56.0 47 0.0016 27.3 7.8 25 108-132 173-197 (443)
66 3kuu_A Phosphoribosylaminoimid 55.9 36 0.0012 24.3 6.2 57 80-137 27-87 (174)
67 2ywx_A Phosphoribosylaminoimid 55.8 42 0.0014 23.6 6.4 57 80-137 14-71 (157)
68 2j07_A Deoxyribodipyrimidine p 55.1 49 0.0017 26.8 7.7 86 14-126 11-96 (420)
69 3trh_A Phosphoribosylaminoimid 55.1 33 0.0011 24.4 5.8 57 80-137 21-81 (169)
70 1xmp_A PURE, phosphoribosylami 52.7 49 0.0017 23.5 6.4 57 80-137 26-86 (170)
71 3bl5_A Queuosine biosynthesis 51.6 62 0.0021 23.0 10.8 35 6-49 3-37 (219)
72 3mcu_A Dipicolinate synthase, 51.4 17 0.00058 26.7 4.0 128 4-164 3-136 (207)
73 1xw8_A UPF0271 protein YBGL; N 51.1 78 0.0027 24.0 8.5 104 10-128 27-142 (252)
74 3k32_A Uncharacterized protein 50.8 27 0.00092 25.1 5.1 37 4-49 4-40 (203)
75 1qzu_A Hypothetical protein MD 50.2 18 0.00061 26.5 4.0 37 4-46 17-54 (206)
76 3ors_A N5-carboxyaminoimidazol 49.9 50 0.0017 23.3 6.1 57 80-137 18-78 (163)
77 3tqr_A Phosphoribosylglycinami 49.8 74 0.0025 23.3 8.0 87 5-129 4-95 (215)
78 3oow_A Phosphoribosylaminoimid 48.2 43 0.0015 23.7 5.5 57 80-137 20-80 (166)
79 1u11_A PURE (N5-carboxyaminoim 47.5 55 0.0019 23.5 6.0 57 80-137 36-96 (182)
80 3p9x_A Phosphoribosylglycinami 47.4 80 0.0028 23.1 10.7 87 6-129 2-93 (211)
81 1ccw_A Protein (glutamate muta 45.9 31 0.0011 23.1 4.5 30 102-131 39-68 (137)
82 3fni_A Putative diflavin flavo 45.6 58 0.002 22.2 6.0 46 81-129 22-68 (159)
83 1y80_A Predicted cobalamin bin 45.3 31 0.001 24.9 4.6 28 103-130 125-152 (210)
84 2x5e_A UPF0271 protein PA4511; 43.4 1E+02 0.0036 23.3 8.5 105 8-126 36-151 (252)
85 3tqi_A GMP synthase [glutamine 42.9 1.3E+02 0.0044 25.1 8.6 34 7-48 231-264 (527)
86 1o4v_A Phosphoribosylaminoimid 41.9 67 0.0023 23.1 5.8 57 80-137 28-88 (183)
87 2yxb_A Coenzyme B12-dependent 41.8 41 0.0014 23.3 4.7 26 104-129 56-81 (161)
88 2hy5_B Intracellular sulfur ox 41.6 61 0.0021 21.8 5.4 40 1-47 1-44 (136)
89 3da8_A Probable 5'-phosphoribo 41.5 1E+02 0.0035 22.6 7.2 87 5-130 11-102 (215)
90 1vl2_A Argininosuccinate synth 41.5 1.4E+02 0.0049 24.3 9.7 37 4-49 12-48 (421)
91 3psf_A Transcription elongatio 40.7 11 0.00037 34.6 1.7 57 107-164 568-629 (1030)
92 4ds3_A Phosphoribosylglycinami 40.7 1E+02 0.0035 22.4 9.5 94 4-134 5-103 (209)
93 1mvl_A PPC decarboxylase athal 40.0 38 0.0013 24.8 4.4 35 5-46 18-52 (209)
94 2dfa_A Hypothetical UPF0271 pr 39.5 1.2E+02 0.0042 22.9 8.7 108 7-128 29-147 (250)
95 1v6t_A Hypothetical UPF0271 pr 39.3 1.2E+02 0.0042 22.9 11.2 108 7-128 29-147 (255)
96 3hly_A Flavodoxin-like domain; 39.0 76 0.0026 21.6 5.7 47 80-129 17-63 (161)
97 1sbz_A Probable aromatic acid 37.9 54 0.0018 23.8 4.9 35 7-46 1-35 (197)
98 1xrs_A D-lysine 5,6-aminomutas 37.6 1.3E+02 0.0046 24.8 7.5 42 96-137 153-197 (516)
99 3kip_A 3-dehydroquinase, type 36.8 1.1E+02 0.0038 21.6 6.1 61 103-164 70-149 (167)
100 3psi_A Transcription elongatio 36.5 14 0.00047 34.6 1.7 57 107-164 565-626 (1219)
101 3u7r_A NADPH-dependent FMN red 36.4 49 0.0017 23.6 4.5 39 6-50 2-43 (190)
102 3iwv_A 5-hydroxyisourate hydro 35.6 7.5 0.00026 26.8 -0.1 14 149-163 122-135 (138)
103 2g2n_A Transthyretin-like prot 34.8 7.1 0.00024 26.0 -0.3 13 150-163 99-111 (114)
104 2h0e_A Transthyretin-like prot 34.6 8.1 0.00028 26.0 -0.1 14 149-163 105-118 (121)
105 3qva_A Transthyretin-like prot 34.4 8.1 0.00028 25.8 -0.1 14 149-163 100-113 (116)
106 1vbk_A Hypothetical protein PH 34.2 1.6E+02 0.0054 22.6 9.4 87 6-127 179-265 (307)
107 1h05_A 3-dehydroquinate dehydr 33.9 68 0.0023 22.2 4.5 82 80-164 32-134 (146)
108 1gqo_A Dehydroquinase; dehydra 33.1 70 0.0024 22.0 4.5 82 80-164 30-132 (143)
109 3n8k_A 3-dehydroquinate dehydr 32.3 80 0.0027 22.4 4.8 81 81-164 59-160 (172)
110 1vhx_A Putative holliday junct 32.1 14 0.00047 25.7 0.8 21 105-125 43-63 (150)
111 3ezx_A MMCP 1, monomethylamine 31.3 41 0.0014 24.5 3.4 22 102-123 128-149 (215)
112 1y8q_A Ubiquitin-like 1 activa 31.1 56 0.0019 25.7 4.3 69 96-173 106-174 (346)
113 2der_A TRNA-specific 2-thiouri 30.6 2E+02 0.007 22.8 10.4 36 5-49 16-51 (380)
114 3obi_A Formyltetrahydrofolate 30.3 1.8E+02 0.0062 22.2 7.4 25 106-130 155-179 (288)
115 2l69_A Rossmann 2X3 fold prote 30.3 1.1E+02 0.0037 19.5 6.5 35 80-115 89-123 (134)
116 1rtt_A Conserved hypothetical 29.1 46 0.0016 23.3 3.3 43 1-49 1-46 (193)
117 3u80_A 3-dehydroquinate dehydr 27.8 1.1E+02 0.0039 21.2 4.9 84 78-164 32-139 (151)
118 2zki_A 199AA long hypothetical 27.7 99 0.0034 21.4 4.9 39 7-50 5-43 (199)
119 2pg3_A Queuosine biosynthesis 26.1 1.8E+02 0.0062 20.8 11.8 35 6-49 2-36 (232)
120 2uyg_A 3-dehydroquinate dehydr 25.9 1.1E+02 0.0039 21.1 4.6 81 82-164 31-132 (149)
121 1meo_A Phosophoribosylglycinam 25.7 1.9E+02 0.0065 20.9 8.8 24 106-129 68-91 (209)
122 3lwz_A 3-dehydroquinate dehydr 25.1 1.8E+02 0.006 20.3 6.2 80 82-164 39-139 (153)
123 1uqr_A 3-dehydroquinate dehydr 24.8 1.5E+02 0.0052 20.6 5.1 81 81-164 32-133 (154)
124 2qs7_A Uncharacterized protein 24.6 1.6E+02 0.0055 19.7 5.8 42 1-48 2-45 (144)
125 1f86_A Transthyretin Thr119Met 24.5 15 0.0005 24.5 -0.2 15 149-164 97-111 (115)
126 3o1l_A Formyltetrahydrofolate 24.2 2.5E+02 0.0084 21.7 10.2 25 106-130 170-194 (302)
127 1vp8_A Hypothetical protein AF 24.1 26 0.00088 25.6 1.1 94 75-170 26-131 (201)
128 2oq2_A Phosphoadenosine phosph 24.1 95 0.0032 23.1 4.4 36 6-47 41-76 (261)
129 1nu0_A Hypothetical protein YQ 23.9 61 0.0021 22.0 2.9 20 105-124 41-60 (138)
130 4f2d_A L-arabinose isomerase; 23.6 88 0.003 26.1 4.4 79 69-156 23-104 (500)
131 1ydg_A Trp repressor binding p 23.0 1.6E+02 0.0054 20.6 5.3 45 1-50 1-46 (211)
132 2amj_A Modulator of drug activ 22.9 1.3E+02 0.0043 21.4 4.7 48 78-128 33-81 (204)
133 2i2x_B MTAC, methyltransferase 22.8 1.2E+02 0.0041 22.6 4.7 31 100-130 157-187 (258)
134 2f6u_A GGGPS, (S)-3-O-geranylg 22.6 58 0.002 24.3 2.8 48 107-161 23-70 (234)
135 2ywb_A GMP synthase [glutamine 22.4 3.3E+02 0.011 22.4 11.0 33 7-48 210-242 (503)
136 2h4e_A Transthyretin; amyloid, 22.1 17 0.00059 24.6 -0.2 16 150-166 107-122 (127)
137 1jq5_A Glycerol dehydrogenase; 22.0 2.1E+02 0.0072 22.3 6.2 44 81-125 47-95 (370)
138 3n0v_A Formyltetrahydrofolate 21.6 2.7E+02 0.0092 21.2 10.1 28 106-133 155-182 (286)
139 3lou_A Formyltetrahydrofolate 21.6 2.7E+02 0.0094 21.2 10.3 91 5-134 94-188 (292)
140 2dpl_A GMP synthetase, GMP syn 21.3 2.8E+02 0.0094 21.2 10.9 35 7-49 21-55 (308)
141 2wsi_A FAD synthetase; transfe 21.2 2.8E+02 0.0095 21.2 10.4 100 7-133 54-173 (306)
142 2p10_A MLL9387 protein; putati 20.8 80 0.0027 24.4 3.3 53 78-135 14-72 (286)
143 3inp_A D-ribulose-phosphate 3- 20.4 1.3E+02 0.0043 22.5 4.3 44 81-126 182-225 (246)
144 1oo2_A Transthyretin; retinol- 20.4 20 0.00068 24.0 -0.2 16 150-166 99-114 (119)
145 3aek_B Light-independent proto 20.3 94 0.0032 26.0 3.9 27 103-130 101-127 (525)
No 1
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.89 E-value=5.8e-23 Score=146.29 Aligned_cols=143 Identities=12% Similarity=0.151 Sum_probs=113.8
Q ss_pred CCCCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHH
Q 030516 3 TAETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVE 82 (176)
Q Consensus 3 ~~~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (176)
.+++++||||+|+|+.+..++++|..+|... +++|+++|+++++....... ....+...+...+..++.++
T Consensus 2 ~~~~~~ILv~~D~s~~s~~al~~A~~la~~~-----~a~l~ll~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~ 72 (146)
T 3s3t_A 2 NARYTNILVPVDSSDAAQAAFTEAVNIAQRH-----QANLTALYVVDDSAYHTPAL----DPVLSELLDAEAAHAKDAMR 72 (146)
T ss_dssp CCCCCEEEEECCSSHHHHHHHHHHHHHHHHH-----TCEEEEEEEEECCCCCCGGG----HHHHHHHHHHHHHHHHHHHH
T ss_pred CCccceEEEEcCCCHHHHHHHHHHHHHHHhc-----CCEEEEEEEecCcccccccc----ccccHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999984 78999999998765321000 00123345666778888888
Q ss_pred HHHHHhhhcCCcceEEEEEcCChHHHHHH-HHHhcCCcEEEEeccCCcccchhccc-ccchhhhheeecccccccc
Q 030516 83 EAKEICSSKSVHDFVVEVVEGDARNILCE-AVEKHHASILVVGSHGYGAIKRYKST-ISCFIWYLIFSRVELGMVN 156 (176)
Q Consensus 83 ~~~~~~~~~~~~~v~~~v~~G~~~~~I~~-~a~~~~~DlIV~Gs~g~~~l~~~l~g-vs~~~~~~~~~~~~~~~~~ 156 (176)
++.+.+.+.+..++++.+..|++.+.|++ +++++++||||||+++++.+.++++| +++ ..+.-++.||++|+
T Consensus 73 ~~~~~~~~~g~~~~~~~~~~g~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~--~vl~~~~~pVlvV~ 146 (146)
T 3s3t_A 73 QRQQFVATTSAPNLKTEISYGIPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGSTTS--YVVDHAPCNVIVIR 146 (146)
T ss_dssp HHHHHHTTSSCCCCEEEEEEECHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCSSCHHHH--HHHHHCSSEEEEEC
T ss_pred HHHHHHHhcCCcceEEEEecCChHHHHHHHHHhhcCCCEEEECCCCCCCcceEEEcchHH--HHhccCCCCEEEeC
Confidence 88888877663268899999999999999 99999999999999999999998754 555 44556778888774
No 2
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.89 E-value=6.5e-23 Score=146.08 Aligned_cols=143 Identities=17% Similarity=0.108 Sum_probs=110.7
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHH
Q 030516 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEA 84 (176)
Q Consensus 5 ~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (176)
|+++||||+|+|+.+..++++|..+|+.. +++|+++|+++++...............+...+...+..++.++++
T Consensus 1 M~~~ILv~vD~s~~s~~al~~A~~la~~~-----~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 75 (147)
T 3hgm_A 1 MFNRIMVPVDGSKGAVKALEKGVGLQQLT-----GAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQA 75 (147)
T ss_dssp CCSEEEEECCSBHHHHHHHHHHHHHHHHH-----CCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHhc-----CCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999984 7899999999875411111111111122334566777888888888
Q ss_pred HHHhhhcCCcce---EEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcccchhccc-ccchhhhheeeccccccc
Q 030516 85 KEICSSKSVHDF---VVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKST-ISCFIWYLIFSRVELGMV 155 (176)
Q Consensus 85 ~~~~~~~~~~~v---~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~g-vs~~~~~~~~~~~~~~~~ 155 (176)
.+.+...+. ++ ++.+..|++.+.|+++++++++||||||+++++.+.++++| +++ ..+.-++.||++|
T Consensus 76 ~~~~~~~g~-~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~--~vl~~~~~pVlvV 147 (147)
T 3hgm_A 76 KTRATELGV-PADKVRAFVKGGRPSRTIVRFARKRECDLVVIGAQGTNGDKSLLLGSVAQ--RVAGSAHCPVLVV 147 (147)
T ss_dssp HHHHHHTTC-CGGGEEEEEEESCHHHHHHHHHHHTTCSEEEECSSCTTCCSCCCCCHHHH--HHHHHCSSCEEEC
T ss_pred HHHHHhcCC-CccceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCccccceeeccHHH--HHHhhCCCCEEEC
Confidence 888877663 45 88899999999999999999999999999999999998754 555 3444567787764
No 3
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.89 E-value=1.4e-22 Score=146.22 Aligned_cols=142 Identities=17% Similarity=0.191 Sum_probs=112.9
Q ss_pred CCCCCCEEEEEec--CCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHH
Q 030516 2 ATAETQTMVVGID--DSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAAR 79 (176)
Q Consensus 2 ~~~~~~~ILVavD--~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (176)
.++++++||||+| +|+.+..++++|..+|+.. +++|+++|+++++.... .. ...+...+...+.+++
T Consensus 11 ~~~~~~~ILv~vD~~~s~~s~~al~~a~~la~~~-----~a~l~ll~v~~~~~~~~-~~-----~~~~~~~~~~~~~~~~ 79 (156)
T 3fg9_A 11 EPLVYRRILLTVDEDDNTSSERAFRYATTLAHDY-----DVPLGICSVLESEDINI-FD-----SLTPSKIQAKRKHVED 79 (156)
T ss_dssp SCCCCC-EEEECCSCCCHHHHHHHHHHHHHHHHH-----TCCEEEEEEECCCCTTC-CC-----SSHHHHHHHHHHHHHH
T ss_pred ccccCceEEEEECCCCCHHHHHHHHHHHHHHHhc-----CCEEEEEEEEeCCCccc-cc-----cCCHHHHHHHHHHHHH
Confidence 3578999999999 9999999999999999984 78999999998765321 11 1223455666777888
Q ss_pred HHHHHHHHhhhcCCcceEEEEEc-CChHHHHHHH-HHhcCCcEEEEeccCCcccchhcccccchhhhheeecccccccc
Q 030516 80 VVEEAKEICSSKSVHDFVVEVVE-GDARNILCEA-VEKHHASILVVGSHGYGAIKRYKSTISCFIWYLIFSRVELGMVN 156 (176)
Q Consensus 80 ~l~~~~~~~~~~~~~~v~~~v~~-G~~~~~I~~~-a~~~~~DlIV~Gs~g~~~l~~~l~gvs~~~~~~~~~~~~~~~~~ 156 (176)
.++++.+.+.+.+...+++.+.. |+|.++|+++ |+++++||||||+++++.+.++++++++. .+.-++.||++|+
T Consensus 80 ~l~~~~~~~~~~g~~~~~~~v~~~g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~~~~Gs~~~~--vl~~a~~PVlvV~ 156 (156)
T 3fg9_A 80 VVAEYVQLAEQRGVNQVEPLVYEGGDVDDVILEQVIPEFKPDLLVTGADTEFPHSKIAGAIGPR--LARKAPISVIVVR 156 (156)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHTHHHHHCCSEEEEETTCCCTTSSSCSCHHHH--HHHHCSSEEEEEC
T ss_pred HHHHHHHHHHHcCCCceEEEEEeCCCHHHHHHHHHHHhcCCCEEEECCCCCCccceeecchHHH--HHHhCCCCEEEeC
Confidence 88888888877764348888998 9999999999 99999999999999999998655667664 4455788888774
No 4
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.89 E-value=2.1e-22 Score=145.99 Aligned_cols=148 Identities=16% Similarity=0.117 Sum_probs=110.9
Q ss_pred CCCCCCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCC-----CcccCCCCCC--c-cCC---ccch
Q 030516 1 MATAETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSP-----SAVIGLAGPG--A-VEV---LPHV 69 (176)
Q Consensus 1 m~~~~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~-----~~~~~~~~~~--~-~~~---~~~~ 69 (176)
|+ +++++||||+|+|+.+..|+++|..+|+.. +++|+++|++++. ... ...... . ... .+..
T Consensus 1 M~-~~~~~ILv~vD~s~~s~~al~~a~~la~~~-----~a~l~ll~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 73 (162)
T 1mjh_A 1 MS-VMYKKILYPTDFSETAEIALKHVKAFKTLK-----AEEVILLHVIDEREIKKRDIF-SLLLGVAGLNKSVEEFENEL 73 (162)
T ss_dssp ---CCCCEEEEECCSCHHHHHHHHHHHHTCCSS-----CCEEEEEEEEEGGGTC------------------CHHHHHHH
T ss_pred Cc-cccceEEEEeCCCHHHHHHHHHHHHHHhhc-----CCeEEEEEEecCccccccccc-cccccccccccchhhhHHHH
Confidence 66 479999999999999999999999999983 7899999998754 110 010000 0 000 1234
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcccchhcc-cccchhhhheee
Q 030516 70 DSDFKKIAARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKS-TISCFIWYLIFS 148 (176)
Q Consensus 70 ~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~-gvs~~~~~~~~~ 148 (176)
.+...+.+++.++++.+.+...+. ++++.+..|+|.+.|+++|+++++||||||++|++.+.++++ ++++.+. .-+
T Consensus 74 ~~~~~~~~~~~l~~~~~~~~~~g~-~~~~~v~~G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~GSv~~~vl--~~~ 150 (162)
T 1mjh_A 74 KNKLTEEAKNKMENIKKELEDVGF-KVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVI--KKS 150 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC-EEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHH--HHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-ceEEEEcCCCHHHHHHHHHHHcCCCEEEEcCCCCCCccceEecchHHHHH--HhC
Confidence 455667778888888888776664 688888899999999999999999999999999999999875 4665443 347
Q ss_pred cccccccccc
Q 030516 149 RVELGMVNCF 158 (176)
Q Consensus 149 ~~~~~~~~~~ 158 (176)
+.||++|+..
T Consensus 151 ~~pVlvv~~~ 160 (162)
T 1mjh_A 151 NKPVLVVKRK 160 (162)
T ss_dssp CSCEEEECCC
T ss_pred CCCEEEEeCC
Confidence 8999999764
No 5
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.89 E-value=2.9e-22 Score=143.36 Aligned_cols=145 Identities=12% Similarity=0.110 Sum_probs=98.2
Q ss_pred CCCCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHH
Q 030516 3 TAETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVE 82 (176)
Q Consensus 3 ~~~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (176)
||++++||||+|+|+.+..++++|..+|.+. +++|+++|++++................++..+...+.+++.++
T Consensus 3 m~~~~~ILv~vD~s~~s~~al~~a~~la~~~-----~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 77 (150)
T 3tnj_A 3 MSVYHHILLAVDFSSEDSQVVQKVRNLASQI-----GARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLS 77 (150)
T ss_dssp -CCCSEEEEECCCSTTHHHHHHHHHHHHHHH-----TCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHH
T ss_pred CCccceEEEEeCCCHHHHHHHHHHHHHHhhc-----CCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999984 78999999998654310001111111123345666667777777
Q ss_pred HHHHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcccchhcc-cccchhhhheeecccccccccc
Q 030516 83 EAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKS-TISCFIWYLIFSRVELGMVNCF 158 (176)
Q Consensus 83 ~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~-gvs~~~~~~~~~~~~~~~~~~~ 158 (176)
++.+.+ +...+++.+..|++.+.|+++++++++||||||+++++.+. +++ ++++ ..+.-++.||++|++.
T Consensus 78 ~~~~~~---~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~-~~~Gs~~~--~vl~~~~~pVlvv~~~ 148 (150)
T 3tnj_A 78 QIGNTL---GIDPAHRWLVWGEPREEIIRIAEQENVDLIVVGSHGRHGLA-LLLGSTAN--SVLHYAKCDVLAVRLR 148 (150)
T ss_dssp HHHHHH---TCCGGGEEEEESCHHHHHHHHHHHTTCSEEEEEEC---------CCCHHH--HHHHHCSSEEEEEECC
T ss_pred HHHHHc---CCCcceEEEecCCHHHHHHHHHHHcCCCEEEEecCCCCCcC-eEecchHH--HHHHhCCCCEEEEeCC
Confidence 665544 32225677889999999999999999999999999999998 764 4555 4455678999998864
No 6
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.88 E-value=1.1e-21 Score=143.47 Aligned_cols=148 Identities=14% Similarity=0.045 Sum_probs=110.2
Q ss_pred CCCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCC-----ccCCccchhHHHHHHHH
Q 030516 4 AETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPG-----AVEVLPHVDSDFKKIAA 78 (176)
Q Consensus 4 ~~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 78 (176)
+++++||||+|+|+.+..++++|..+|++. +++|+++|++++........... +....+.+.+...+.++
T Consensus 3 ~m~~~ILv~vD~s~~s~~al~~A~~la~~~-----~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T 2dum_A 3 FMFRKVLFPTDFSEGAYRAVEVFEKRNKME-----VGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEAS 77 (170)
T ss_dssp -CCSEEEEECCSSHHHHHHHHHHHHHCCSC-----CSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHH
T ss_pred cccceEEEEecCCHHHHHHHHHHHHHHHhc-----CCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHH
Confidence 679999999999999999999999999983 78999999987643211100000 00011234556667778
Q ss_pred HHHHHHHHHhhhcCCcceEE--EEEcCChHHHHHHHHHhcCCcEEEEeccCCcccchhccc-ccchhhhheeeccccccc
Q 030516 79 RVVEEAKEICSSKSVHDFVV--EVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKST-ISCFIWYLIFSRVELGMV 155 (176)
Q Consensus 79 ~~l~~~~~~~~~~~~~~v~~--~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~g-vs~~~~~~~~~~~~~~~~ 155 (176)
+.++++.+.+...+. ++++ .+..|++.+.|+++|+++++||||||+++++.+.++++| +++. .+.-++.||++|
T Consensus 78 ~~l~~~~~~~~~~g~-~~~~~~~~~~g~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~Gsv~~~--vl~~~~~PVlvv 154 (170)
T 2dum_A 78 RKLQEKAEEVKRAFR-AKNVRTIIRFGIPWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMR--VLRKTKKPVLII 154 (170)
T ss_dssp HHHHHHHHHHHHHTT-CSEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCCCC--TTCCCHHHHH--HHHHCSSCEEEE
T ss_pred HHHHHHHHHHHHcCC-ceeeeeEEecCChHHHHHHHHHHcCCCEEEECCCCCCccccceechHHHH--HHHhCCCCEEEE
Confidence 888888887766653 5777 888999999999999999999999999999999988754 5553 344578999999
Q ss_pred cccC
Q 030516 156 NCFG 159 (176)
Q Consensus 156 ~~~~ 159 (176)
+...
T Consensus 155 ~~~~ 158 (170)
T 2dum_A 155 KEVD 158 (170)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8654
No 7
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.86 E-value=2.6e-21 Score=140.10 Aligned_cols=130 Identities=12% Similarity=0.107 Sum_probs=105.2
Q ss_pred CCCCEEEEEecC-CHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHH
Q 030516 4 AETQTMVVGIDD-SEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVE 82 (176)
Q Consensus 4 ~~~~~ILVavD~-s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (176)
|++++||||+|+ |+.+..++++|..+|... +++|+++|+++.+... .+...+..++.++
T Consensus 22 mm~~~ILv~vD~~s~~s~~al~~A~~la~~~-----~a~l~llhV~~~~~~~---------------~~~~~~~~~~~l~ 81 (155)
T 3dlo_A 22 MIYMPIVVAVDKKSDRAERVLRFAAEEARLR-----GVPVYVVHSLPGGGRT---------------KDEDIIEAKETLS 81 (155)
T ss_dssp CCCCCEEEECCSSSHHHHHHHHHHHHHHHHH-----TCCEEEEEEECCSTTS---------------CHHHHHHHHHHHH
T ss_pred cccCeEEEEECCCCHHHHHHHHHHHHHHHhc-----CCEEEEEEEEcCCCcc---------------cHHHHHHHHHHHH
Confidence 679999999999 999999999999999984 7899999998854321 1345566778888
Q ss_pred HHHHHhhhcCCcceEE--EEEcCChHHHHHHHHHhcCCcEEEEeccCCcccchhcc-cccchhhhheeecccccccc
Q 030516 83 EAKEICSSKSVHDFVV--EVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKS-TISCFIWYLIFSRVELGMVN 156 (176)
Q Consensus 83 ~~~~~~~~~~~~~v~~--~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~-gvs~~~~~~~~~~~~~~~~~ 156 (176)
++.+.+.+.+. ++++ .+..|+|.++|+++|+++++||||||+++++.+.++++ ++++ ..+.-+..||++|+
T Consensus 82 ~~~~~~~~~g~-~~~~~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSv~~--~vl~~a~~PVLvVr 155 (155)
T 3dlo_A 82 WAVSIIRKEGA-EGEEHLLVRGKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKLIFGSVAR--DVILKANKPVICIK 155 (155)
T ss_dssp HHHHHHHHTTC-CEEEEEEESSSCHHHHHHHHHHHTTCSEEEEECCEECTTSCEECCHHHH--HHHHHCSSCEEEEC
T ss_pred HHHHHHHhcCC-CceEEEEecCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCEEeccHHH--HHHHhCCCCEEEeC
Confidence 88888777653 4554 45669999999999999999999999999999999775 4555 44456788888774
No 8
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.86 E-value=3.9e-21 Score=135.67 Aligned_cols=136 Identities=16% Similarity=0.207 Sum_probs=107.5
Q ss_pred CCEEEEEecCCHhHHHHHHHHHHHh-cccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHH-HHHHHHHHH
Q 030516 6 TQTMVVGIDDSEQSTYALQWTLDHF-FANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFK-KIAARVVEE 83 (176)
Q Consensus 6 ~~~ILVavD~s~~s~~al~~a~~la-~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ 83 (176)
+++||||+|+|+.+..++++|..+| +. .+++|+++|+++++...... . .......++.. +..++.+++
T Consensus 1 ~~~ILv~~D~s~~s~~al~~a~~la~~~-----~~a~l~ll~v~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~l~~ 70 (138)
T 3idf_A 1 MKKLLFAIDDTEACERAAQYILDMFGKD-----ADCTLTLIHVKPEFMLYGEA-V----LAAYDEIEMKEEEKAKLLTQK 70 (138)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHHHTTC-----TTEEEEEEEEECCCCCCHHH-H----HHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHhccC-----CCCEEEEEEEecCCCccccc-c----cCcHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999 77 37899999999876532100 0 01122344555 777888888
Q ss_pred HHHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcccchhcccccchhhhheeecccccccc
Q 030516 84 AKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKSTISCFIWYLIFSRVELGMVN 156 (176)
Q Consensus 84 ~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~gvs~~~~~~~~~~~~~~~~~ 156 (176)
+.+.+...+. ++++.+..|++.+.|+++++ ++||||||+++++.+.++++++++ ..+.-+..||++|+
T Consensus 71 ~~~~~~~~g~-~~~~~v~~g~~~~~I~~~a~--~~dliV~G~~~~~~~~~~~Gs~~~--~vl~~~~~pVlvv~ 138 (138)
T 3idf_A 71 FSTFFTEKGI-NPFVVIKEGEPVEMVLEEAK--DYNLLIIGSSENSFLNKIFASHQD--DFIQKAPIPVLIVK 138 (138)
T ss_dssp HHHHHHTTTC-CCEEEEEESCHHHHHHHHHT--TCSEEEEECCTTSTTSSCCCCTTC--HHHHHCSSCEEEEC
T ss_pred HHHHHHHCCC-CeEEEEecCChHHHHHHHHh--cCCEEEEeCCCcchHHHHhCcHHH--HHHhcCCCCEEEeC
Confidence 8888877664 68899999999999999999 999999999999999999844555 44456778888774
No 9
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.85 E-value=5.5e-21 Score=139.45 Aligned_cols=143 Identities=18% Similarity=0.144 Sum_probs=103.4
Q ss_pred CCCCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEE--EEecCCCcccCCCCCCccCCccchhHHHHHHHHHH
Q 030516 3 TAETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIV--HARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARV 80 (176)
Q Consensus 3 ~~~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lv--hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (176)
..++++||||+|+|+.+..|+++|..+|+ . +++|+++ |+++++........ . .+.+.+...+..++.
T Consensus 14 ~~~~~~ILv~vD~s~~s~~al~~A~~lA~-~-----~a~l~ll~a~v~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~ 82 (163)
T 1tq8_A 14 LSAYKTVVVGTDGSDSSMRAVDRAAQIAG-A-----DAKLIIASAYLPQHEDARAADIL-K----DESYKVTGTAPIYEI 82 (163)
T ss_dssp CCCCCEEEEECCSSHHHHHHHHHHHHHHT-T-----TSEEEEEEECCC-------------------------CCTHHHH
T ss_pred cccCCEEEEEcCCCHHHHHHHHHHHHHhC-C-----CCEEEEEEeeeccCccccccccc-c----cHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999 6 7899999 88765432111100 0 112223344556777
Q ss_pred HHHHHHHhhhcCCcc-eEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcccchhcc-cccchhhhheeecccccccccc
Q 030516 81 VEEAKEICSSKSVHD-FVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKS-TISCFIWYLIFSRVELGMVNCF 158 (176)
Q Consensus 81 l~~~~~~~~~~~~~~-v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~-gvs~~~~~~~~~~~~~~~~~~~ 158 (176)
++++.+.+...+ .+ +++.+..|+|.+.|+++|++.++||||||+++++.+.++++ ++++.+ +.-++.||++|+..
T Consensus 83 l~~~~~~~~~~g-v~~v~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSva~~v--l~~a~~PVlvV~~~ 159 (163)
T 1tq8_A 83 LHDAKERAHNAG-AKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANV--SRRAKVDVLIVHTT 159 (163)
T ss_dssp HHHHHHHHHTTT-CCEEEEEEECSSHHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHH--HHHTTCEEEEECCC
T ss_pred HHHHHHHHHHcC-CCeEEEEEecCCHHHHHHHHHHhcCCCEEEECCCCCCcccceeeccHHHHH--HHhCCCCEEEEeCC
Confidence 777777776665 35 88889999999999999999999999999999999999875 455543 44578999999864
Q ss_pred C
Q 030516 159 G 159 (176)
Q Consensus 159 ~ 159 (176)
.
T Consensus 160 ~ 160 (163)
T 1tq8_A 160 E 160 (163)
T ss_dssp -
T ss_pred C
Confidence 3
No 10
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.85 E-value=8.2e-21 Score=134.05 Aligned_cols=135 Identities=21% Similarity=0.220 Sum_probs=98.0
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHH
Q 030516 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEA 84 (176)
Q Consensus 5 ~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (176)
++++||||+|+|+.+..++++|..+|+.. +++|+++|++++.... ..... .+...+...+..++.++++
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~la~~~-----~a~l~ll~v~~~~~~~--~~~~~----~~~~~~~~~~~~~~~l~~~ 69 (137)
T 2z08_A 1 MFKTILLAYDGSEHARRAAEVAKAEAEAH-----GARLIVVHAYEPVPDY--LGEPF----FEEALRRRLERAEGVLEEA 69 (137)
T ss_dssp CCSEEEEECCSSHHHHHHHHHHHHHHHHH-----TCEEEEEEEECC--------------------CHHHHHHHHHHHHH
T ss_pred CcceEEEEeCCCHHHHHHHHHHHHHHhhc-----CCEEEEEEEecCCCcc--ccccc----hHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999983 7899999998743211 11000 1122334455666666665
Q ss_pred HHHhhhcCCc-ceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcccchhcc-cccchhhhheeecccccccc
Q 030516 85 KEICSSKSVH-DFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKS-TISCFIWYLIFSRVELGMVN 156 (176)
Q Consensus 85 ~~~~~~~~~~-~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~-gvs~~~~~~~~~~~~~~~~~ 156 (176)
.+. .+ . ++++.+..|++.+.|+++++++++||||||+++++.+.++++ ++++.+ +.-++.||++|+
T Consensus 70 ~~~---~g-~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~v--l~~~~~pVlvv~ 137 (137)
T 2z08_A 70 RAL---TG-VPKEDALLLEGVPAEAILQAARAEKADLIVMGTRGLGALGSLFLGSQSQRV--VAEAPCPVLLVR 137 (137)
T ss_dssp HHH---HC-CCGGGEEEEESSHHHHHHHHHHHTTCSEEEEESSCTTCCSCSSSCHHHHHH--HHHCSSCEEEEC
T ss_pred HHH---cC-CCccEEEEEecCHHHHHHHHHHHcCCCEEEECCCCCchhhhhhhccHHHHH--HhcCCCCEEEeC
Confidence 544 23 3 466778899999999999999999999999999999998875 455543 444788988774
No 11
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.84 E-value=1.4e-20 Score=138.15 Aligned_cols=151 Identities=19% Similarity=0.345 Sum_probs=98.8
Q ss_pred CCCCCEEEEEecCCH---------hHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCC-CCC-CccCCccchhH
Q 030516 3 TAETQTMVVGIDDSE---------QSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGL-AGP-GAVEVLPHVDS 71 (176)
Q Consensus 3 ~~~~~~ILVavD~s~---------~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~-~~~-~~~~~~~~~~~ 71 (176)
...+++||||+|+|+ .+..++++|..++.+. ...+++|+++|+++........ ... ......+.+.+
T Consensus 2 ~~~~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~--~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (175)
T 2gm3_A 2 GSEPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRS--NTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQ 79 (175)
T ss_dssp ---CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTT--CTTSEEEEEEEEEC----------CCCCSHHHHHHHTT
T ss_pred CCCccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcc--cCCCCEEEEEEEeecccccccccccccCCHHHHHHHHH
Confidence 356899999999999 9999999999987441 0126899999998654321100 000 00001111222
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcccchhcc-cccchhhhheeecc
Q 030516 72 DFKKIAARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKS-TISCFIWYLIFSRV 150 (176)
Q Consensus 72 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~-gvs~~~~~~~~~~~ 150 (176)
+..+..++.++++.+.+...+. ++++++..|++.+.|+++++++++||||||+++++.+.++++ ++++. .+.-++.
T Consensus 80 ~~~~~~~~~l~~~~~~~~~~g~-~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~Gsva~~--vl~~a~~ 156 (175)
T 2gm3_A 80 SNKAKGLHLLEFFVNKCHEIGV-GCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAF--CVKHAEC 156 (175)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTC-EEEEEEEESCHHHHHHHHHHHHCCSEEEEEECCCC--------CHHHH--HHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHHHCCC-ceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCChhhhhhcCchHHH--HHhCCCC
Confidence 3445566777777777766664 688888999999999999999999999999999999998875 45553 3445789
Q ss_pred cccccccc
Q 030516 151 ELGMVNCF 158 (176)
Q Consensus 151 ~~~~~~~~ 158 (176)
||++|+..
T Consensus 157 pVlvv~~~ 164 (175)
T 2gm3_A 157 PVMTIKRN 164 (175)
T ss_dssp CEEEEECC
T ss_pred CEEEEcCC
Confidence 99999865
No 12
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.83 E-value=3.3e-20 Score=147.83 Aligned_cols=160 Identities=12% Similarity=0.056 Sum_probs=120.4
Q ss_pred CCCCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHH
Q 030516 3 TAETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVE 82 (176)
Q Consensus 3 ~~~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (176)
|+++++|||++|+|+.+..|+++|+.+|++. +++|+++|++++..... .........+.+.+...+.+++.++
T Consensus 4 M~~~k~ILv~~D~s~~s~~al~~A~~lA~~~-----~a~l~ll~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~ 76 (319)
T 3olq_A 4 MEKYQNLLVVIDPNQDDQPALRRAVYIVQRN-----GGRIKAFLPVYDLSYDM--TTLLSPDERNAMRKGVINQKTAWIK 76 (319)
T ss_dssp -CCSCEEEEECCTTCSCCHHHHHHHHHHHHH-----CCEEEEEEEECCGGGGC--TTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCcccHHHHHHHHHHHHHc-----CCeEEEEEEecccchhh--ccccChhhHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999994 78999999986543211 1111111122333445566677888
Q ss_pred HHHHHhhhcCCcceEEEEE-cCChHHHHHHHHHhcCCcEEEEeccCCcccchhccc-ccchhhhheeeccccccccccCc
Q 030516 83 EAKEICSSKSVHDFVVEVV-EGDARNILCEAVEKHHASILVVGSHGYGAIKRYKST-ISCFIWYLIFSRVELGMVNCFGY 160 (176)
Q Consensus 83 ~~~~~~~~~~~~~v~~~v~-~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~g-vs~~~~~~~~~~~~~~~~~~~~~ 160 (176)
++.+.+...+ .++++.+. .|++.+.|+++++++++||||||+++++.+.++++| ++. ..+.-+..||++|+....
T Consensus 77 ~~~~~~~~~~-v~~~~~~~~~g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~Gs~~~--~vl~~~~~PVlvv~~~~~ 153 (319)
T 3olq_A 77 QQARYYLEAG-IQIDIKVIWHNRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLIFTPLDW--QLLRKCPAPVWMVKDKEW 153 (319)
T ss_dssp HHHHHHHHTT-CCEEEEEEECSCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCBCCHHHH--HHHHHCSSCEEEEESSCC
T ss_pred HHHHHHhhcC-CeEEEEEEecCChHHHHHHHHHhcCCCEEEEecCcCchhhcccccccHH--HHHhcCCCCEEEecCccc
Confidence 8777776555 46888888 899999999999999999999999999999998755 443 555678899999987655
Q ss_pred ccceeeeeeeee
Q 030516 161 YSYLSIIKRTQI 172 (176)
Q Consensus 161 ~~~~~~~~~~~~ 172 (176)
..|-+|..++|-
T Consensus 154 ~~~~~Ilva~D~ 165 (319)
T 3olq_A 154 PEYGTIVVAANL 165 (319)
T ss_dssp CTTCEEEEECCC
T ss_pred ccCCeEEEEECC
Confidence 568888887763
No 13
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.82 E-value=6e-20 Score=130.14 Aligned_cols=137 Identities=15% Similarity=0.150 Sum_probs=96.5
Q ss_pred CEEEEEecCCHh--HHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHH
Q 030516 7 QTMVVGIDDSEQ--STYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEA 84 (176)
Q Consensus 7 ~~ILVavD~s~~--s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (176)
++||||+|+|+. +..++++|..+|+.. +++|+++|+++++.......... ... .+...+..++..+.+
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~-----~a~l~ll~v~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~l 71 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARID-----DAEVHFLTVIPSLPYYASLGMAY-TAE----LPGMDELREGSETQL 71 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHH-----TCEEEEEEEECC---------------------CHHHHHHHHHHHH
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhc-----CCeEEEEEEecCCcccccccccc-cch----hhhHHHHHHHHHHHH
Confidence 799999999999 999999999999983 78999999998754321111110 000 111223344455555
Q ss_pred HHHhhhcC--CcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcccchhcc-cccchhhhheeecccccccc
Q 030516 85 KEICSSKS--VHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKS-TISCFIWYLIFSRVELGMVN 156 (176)
Q Consensus 85 ~~~~~~~~--~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~-gvs~~~~~~~~~~~~~~~~~ 156 (176)
.+.+.+.+ ...+++.+..|++.+.|+++++++++||||||+++ +++.++++ ++++ ..+.-++.||++|+
T Consensus 72 ~~~~~~~~~~~~~v~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~-~~~~~~~~Gs~~~--~v~~~~~~pVlvv~ 143 (143)
T 3fdx_A 72 KEIAKKFSIPEDRMHFHVAEGSPKDKILALAKSLPADLVIIASHR-PDITTYLLGSNAA--AVVRHAECSVLVVR 143 (143)
T ss_dssp HHHHTTSCCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEEESSC-TTCCSCSSCHHHH--HHHHHCSSEEEEEC
T ss_pred HHHHHHcCCCCCceEEEEEecChHHHHHHHHHHhCCCEEEEeCCC-CCCeeeeeccHHH--HHHHhCCCCEEEeC
Confidence 55665553 24578889999999999999999999999999996 77888775 4555 34456788888774
No 14
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.80 E-value=1.7e-19 Score=142.48 Aligned_cols=155 Identities=15% Similarity=0.076 Sum_probs=121.1
Q ss_pred CCCCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHH
Q 030516 3 TAETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVE 82 (176)
Q Consensus 3 ~~~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (176)
||++++||||+|+|+.+..|+++|..+|++. +++|+++|+++.+....... ....+...+...+.+++.++
T Consensus 19 m~m~~~ILv~vD~s~~s~~al~~A~~lA~~~-----~a~l~ll~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~ 89 (294)
T 3loq_A 19 YFQSNAMLLPTDLSENSFKVLEYLGDFKKVG-----VEEIGVLFVINLTKLSTVSG----GIDIDHYIDEMSEKAEEVLP 89 (294)
T ss_dssp SSTTCEEEEECCSCTGGGGGGGGHHHHHHTT-----CCEEEEECCEECTTC---------CCCTTHHHHHHHHHHHHHHH
T ss_pred HHhhccEEEecCCCHHHHHHHHHHHHHHhhc-----CCEEEEEEEecCcccccccc----cccHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999983 78999999998765321111 11223455666778888899
Q ss_pred HHHHHhhhcCCcceEE-EEE-cCChHHHHHHHHHhcCCcEEEEeccCCcccchhcc-cccchhhhheeeccccccccccC
Q 030516 83 EAKEICSSKSVHDFVV-EVV-EGDARNILCEAVEKHHASILVVGSHGYGAIKRYKS-TISCFIWYLIFSRVELGMVNCFG 159 (176)
Q Consensus 83 ~~~~~~~~~~~~~v~~-~v~-~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~-gvs~~~~~~~~~~~~~~~~~~~~ 159 (176)
++.+.+...+. ++++ .+. .|++.+.| ++++.++|+||||+++++.+.++++ ++++ ..+.-+..||++|+...
T Consensus 90 ~~~~~~~~~g~-~~~~~~v~~~g~~~~~I--~a~~~~~DliV~G~~g~~~~~~~~~Gs~~~--~vl~~~~~PVlvv~~~~ 164 (294)
T 3loq_A 90 EVAQKIEAAGI-KAEVIKPFPAGDPVVEI--IKASENYSFIAMGSRGASKFKKILLGSVSE--GVLHDSKVPVYIFKHDM 164 (294)
T ss_dssp HHHHHHHHTTC-EEEECSSCCEECHHHHH--HHHHTTSSEEEEECCCCCHHHHHHHCCHHH--HHHHHCSSCEEEECCCT
T ss_pred HHHHHHHHcCC-CcceeEeeccCChhHhe--eeccCCCCEEEEcCCCCccccceeeccHHH--HHHhcCCCCEEEecCcc
Confidence 88888877664 6777 677 89999999 9999999999999999999998874 4554 44556789999998765
Q ss_pred c--ccceeeeeeee
Q 030516 160 Y--YSYLSIIKRTQ 171 (176)
Q Consensus 160 ~--~~~~~~~~~~~ 171 (176)
. ..+-+|..++|
T Consensus 165 ~~~~~~~~Ilv~~d 178 (294)
T 3loq_A 165 VVNSLFDRVLVAYD 178 (294)
T ss_dssp TTTCTTSEEEEECC
T ss_pred ccCccCCEEEEEEC
Confidence 3 56778877776
No 15
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=99.80 E-value=1e-19 Score=128.72 Aligned_cols=138 Identities=17% Similarity=0.186 Sum_probs=96.7
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecC-CCcccCCCCCCccCCccchhHHHHHHHHHHHHH
Q 030516 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPS-PSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEE 83 (176)
Q Consensus 5 ~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (176)
|+++||||+|+|+.+..++++|..+|+.. +++|+++|++++ +....... ....+...+...+..++.+++
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~la~~~-----~a~l~ll~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~ 71 (141)
T 1jmv_A 1 MYKHILVAVDLSEESPILLKKAVGIAKRH-----DAKLSIIHVDVNFSDLYTGLI----DVNMSSMQDRISTETQKALLD 71 (141)
T ss_dssp CCSEEEEEECCSTTHHHHHHHHHHHHHHH-----TCEEEEEEEEECCGGGCCCCE----EHHHHHHTTCCCCHHHHHHHH
T ss_pred CCceEEEEecCchhhHHHHHHHHHHHHhc-----CCEEEEEEEecCchhhhcccc----ccchHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999983 789999999854 22110000 000001111112334444554
Q ss_pred HHHHhhhcCCcce-EEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcccchhcccccchhhhheeeccccccccccC
Q 030516 84 AKEICSSKSVHDF-VVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKSTISCFIWYLIFSRVELGMVNCFG 159 (176)
Q Consensus 84 ~~~~~~~~~~~~v-~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~gvs~~~~~~~~~~~~~~~~~~~~ 159 (176)
+.+ +.+. ++ +..+..|++.+.|+++|+++++||||||++ ++.+.++ +++++ ..+.-++.||++|+..+
T Consensus 72 ~~~---~~~~-~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~-~~~~~~l-gs~~~--~vl~~~~~pVlvv~~~~ 140 (141)
T 1jmv_A 72 LAE---SVDY-PISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHH-QDFWSKL-MSSTR--QVMNTIKIDMLVVPLRD 140 (141)
T ss_dssp HHH---HSSS-CCCCEEEEEECHHHHHHHHHHHTTCCEEEEEEC-CCCHHHH-HHHHH--HHHTTCCSEEEEEECCC
T ss_pred HHH---HcCC-CceEEEEecCCHHHHHHHHHHhcCCCEEEEeCC-Cchhhhh-cchHH--HHHhcCCCCEEEeeCCC
Confidence 433 3343 33 567788999999999999999999999999 9988884 56665 44456789999998754
No 16
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.79 E-value=5.7e-19 Score=139.34 Aligned_cols=138 Identities=8% Similarity=0.044 Sum_probs=109.6
Q ss_pred CCCCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHH
Q 030516 3 TAETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVE 82 (176)
Q Consensus 3 ~~~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (176)
|+++++|||++|+|+.+..++++|..+|++. +++|+++|+.++ +..++.++
T Consensus 4 M~~~~~ILv~~D~s~~s~~al~~A~~la~~~-----~a~l~ll~v~~~------------------------~~~~~~l~ 54 (290)
T 3mt0_A 4 MQAIRSILVVIEPDQLEGLALKRAQLIAGVT-----QSHLHLLVCEKR------------------------RDHSAALN 54 (290)
T ss_dssp TTTCCEEEEECCSSCSCCHHHHHHHHHHHHH-----CCEEEEEEECSS------------------------SCCHHHHH
T ss_pred hhhhceEEEEeCCCccchHHHHHHHHHHHhc-----CCeEEEEEeeCc------------------------HHHHHHHH
Confidence 4679999999999999999999999999994 789999999862 01122344
Q ss_pred HHHHHhhhcCCcceEEEEE-cCChHHHHHHHHHhcCCcEEEEeccCCcccchhccc-ccchhhhheeeccccccccccCc
Q 030516 83 EAKEICSSKSVHDFVVEVV-EGDARNILCEAVEKHHASILVVGSHGYGAIKRYKST-ISCFIWYLIFSRVELGMVNCFGY 160 (176)
Q Consensus 83 ~~~~~~~~~~~~~v~~~v~-~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~g-vs~~~~~~~~~~~~~~~~~~~~~ 160 (176)
++.+.+...+ .++++.+. .|++.+.|++++++.++||||||+++++.+.++++| +++ ..+.-+..||++|+....
T Consensus 55 ~~~~~~~~~~-~~~~~~~~~~g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~--~vl~~~~~PVlvv~~~~~ 131 (290)
T 3mt0_A 55 DLAQELREEG-YSVSTNQAWKDSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAILTPDDW--KLLRFAPCPVLMTKTARP 131 (290)
T ss_dssp HHHHHHHHTT-CCEEEEEECSSSHHHHHHHHHHHHTCSEEEEECCCSCTTSTTSCCHHHH--HHHHHCSSCEEEECCCSC
T ss_pred HHHHHHhhCC-CeEEEEEEeCCCHHHHHHHHHHhcCCCEEEEecccCCchhhcccCHHHH--HHHhcCCCCEEEecCCCC
Confidence 4444444445 46888887 578999999999999999999999999999998765 443 455668999999995444
Q ss_pred ccceeeeeeeee
Q 030516 161 YSYLSIIKRTQI 172 (176)
Q Consensus 161 ~~~~~~~~~~~~ 172 (176)
..|-+|..++|-
T Consensus 132 ~~~~~Ilva~D~ 143 (290)
T 3mt0_A 132 WTGGKILAAVDV 143 (290)
T ss_dssp STTCEEEEEECT
T ss_pred CCCCeEEEEECC
Confidence 489999988874
No 17
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.77 E-value=6e-18 Score=134.55 Aligned_cols=154 Identities=18% Similarity=0.204 Sum_probs=116.4
Q ss_pred CCCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHH
Q 030516 4 AETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEE 83 (176)
Q Consensus 4 ~~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (176)
+++++||||+|+|+.+..++++|..+|++. +++|+++|++++....+ ... .......+...+..++.+++
T Consensus 17 ~~~~~ILv~~D~s~~s~~al~~A~~lA~~~-----~a~l~ll~v~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~l~~ 86 (309)
T 3cis_A 17 NSSLGIIVGIDDSPAAQVAVRWAARDAELR-----KIPLTLVHAVSPEVATW--LEV---PLPPGVLRWQQDHGRHLIDD 86 (309)
T ss_dssp -CTTEEEEECCSSHHHHHHHHHHHHHHHHH-----TCCEEEEEECCCCCCCT--TCC---CCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCHHHHHHHHHHHHHHHhc-----CCcEEEEEEecCccccc--ccC---CCCchhhHHHHHHHHHHHHH
Confidence 578999999999999999999999999984 78999999987432211 100 11123344556667778888
Q ss_pred HHHHhhhc----CCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcccchhccc-ccchhhhheeecccccccccc
Q 030516 84 AKEICSSK----SVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKST-ISCFIWYLIFSRVELGMVNCF 158 (176)
Q Consensus 84 ~~~~~~~~----~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~g-vs~~~~~~~~~~~~~~~~~~~ 158 (176)
+.+.+.+. +..++++.+..|++.+.|+++++ ++||||||+++++.+.++++| +++ ..+.-+..||++|+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~--~~DliV~G~~g~~~~~~~~~Gs~~~--~vl~~~~~PVlvv~~~ 162 (309)
T 3cis_A 87 ALKVVEQASLRAGPPTVHSEIVPAAAVPTLVDMSK--DAVLMVVGCLGSGRWPGRLLGSVSS--GLLRHAHCPVVIIHDE 162 (309)
T ss_dssp HHHHHHHHCSSSCCSCEEEEEESSCHHHHHHHHGG--GEEEEEEESSCTTCCTTCCSCHHHH--HHHHHCSSCEEEECTT
T ss_pred HHHHHHHhcccCCCceEEEEEecCCHHHHHHHHhc--CCCEEEECCCCCccccccccCcHHH--HHHHhCCCCEEEEcCC
Confidence 87777664 23578898999999999999997 899999999999999988754 554 4445569999999876
Q ss_pred C----cccceeeeeeee
Q 030516 159 G----YYSYLSIIKRTQ 171 (176)
Q Consensus 159 ~----~~~~~~~~~~~~ 171 (176)
. +..+-+|..++|
T Consensus 163 ~~~~~~~~~~~Ilv~~D 179 (309)
T 3cis_A 163 DSVMPHPQQAPVLVGVD 179 (309)
T ss_dssp CCCSCSSCCCCEEEECC
T ss_pred cccCCCCCCCeEEEEeC
Confidence 5 345667777765
No 18
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=99.77 E-value=2.3e-18 Score=121.40 Aligned_cols=133 Identities=14% Similarity=0.009 Sum_probs=96.5
Q ss_pred CCCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEe-cC-CCcc-cCCCCCCccCCccchhHHHHHHHHHH
Q 030516 4 AETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHAR-PS-PSAV-IGLAGPGAVEVLPHVDSDFKKIAARV 80 (176)
Q Consensus 4 ~~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~-~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (176)
.++++||||+|+|+.+..++++|..+|+.. +++|+++|++ +. +... ....... ..+...+...+..++.
T Consensus 2 ~~~~~ILv~~D~s~~s~~al~~a~~la~~~-----~a~l~ll~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 73 (138)
T 1q77_A 2 NAMKVLLVLTDAYSDCEKAITYAVNFSEKL-----GAELDILAVLEDVYNLERANVTFGLP---FPPEIKEESKKRIERR 73 (138)
T ss_dssp CCCEEEEEEESTTCCCHHHHHHHHHHHTTT-----CCEEEEEEECHHHHHHHHHHHHHCCC---CCTHHHHHHHHHHHHH
T ss_pred CcccEEEEEccCCHhHHHHHHHHHHHHHHc-----CCeEEEEEEecccccccccccccCCC---CChHHHHHHHHHHHHH
Confidence 578999999999999999999999999983 7899999998 63 2100 0000000 0023445556667777
Q ss_pred HHHHHHHh-hhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcccchhcccccchhhhheeecccccccc
Q 030516 81 VEEAKEIC-SSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKSTISCFIWYLIFSRVELGMVN 156 (176)
Q Consensus 81 l~~~~~~~-~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~gvs~~~~~~~~~~~~~~~~~ 156 (176)
++++ +.+ ..... ++++.+..|++.+.|+++++++++||||||++|+ ++++ ..+.-++.||++|+
T Consensus 74 l~~~-~~~~~~~~~-~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~g~--------sv~~--~vl~~a~~PVlvv~ 138 (138)
T 1q77_A 74 LREV-WEKLTGSTE-IPGVEYRIGPLSEEVKKFVEGKGYELVVWACYPS--------AYLC--KVIDGLNLASLIVK 138 (138)
T ss_dssp HHHH-HHHHHSCCC-CCCEEEECSCHHHHHHHHHTTSCCSEEEECSCCG--------GGTH--HHHHHSSSEEEECC
T ss_pred HHHH-HHHhhccCC-cceEEEEcCCHHHHHHHHHHhcCCCEEEEeCCCC--------chHH--HHHHhCCCceEeeC
Confidence 7777 664 22233 5778888999999999999999999999999987 4555 33445678888764
No 19
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.77 E-value=2.5e-18 Score=135.61 Aligned_cols=140 Identities=12% Similarity=0.104 Sum_probs=102.7
Q ss_pred CCCEEEEEecCCHh-------HHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHH
Q 030516 5 ETQTMVVGIDDSEQ-------STYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIA 77 (176)
Q Consensus 5 ~~~~ILVavD~s~~-------s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (176)
.+++||||+|+|+. +..++++|..+|+.. +++|+++|+++++..... .+ . . ...+...+..
T Consensus 133 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~-----~a~l~ll~v~~~~~~~~~--~~---~-~-~~~~~~~~~~ 200 (290)
T 3mt0_A 133 TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLA-----KATLHVISAHPSPMLSSA--DP---T-F-QLSETIEARY 200 (290)
T ss_dssp TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHT-----TCEEEEEEEEC--------------C-H-HHHHHHHHHH
T ss_pred CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHc-----CCeEEEEEEecCcccccc--Cc---h-h-HHHHHHHHHH
Confidence 57999999999998 999999999999983 789999999986643211 00 0 0 2233444445
Q ss_pred HHHHHHHHHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcccchhccc-ccchhhhheeecccccccc
Q 030516 78 ARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKST-ISCFIWYLIFSRVELGMVN 156 (176)
Q Consensus 78 ~~~l~~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~g-vs~~~~~~~~~~~~~~~~~ 156 (176)
++.++++.+ +++...++..+..|++.++|+++++++++||||||++|++.+.++++| +++ ..+--++.||++|+
T Consensus 201 ~~~l~~~~~---~~g~~~~~~~v~~g~~~~~I~~~a~~~~~dLiVmG~~g~~~~~~~~~Gsv~~--~vl~~~~~pVLvv~ 275 (290)
T 3mt0_A 201 REACRTFQA---EYGFSDEQLHIEEGPADVLIPRTAQKLDAVVTVIGTVARTGLSGALIGNTAE--VVLDTLESDVLVLK 275 (290)
T ss_dssp HHHHHHHHH---HHTCCTTTEEEEESCHHHHHHHHHHHHTCSEEEEECCSSCCGGGCCSCHHHH--HHHTTCSSEEEEEC
T ss_pred HHHHHHHHH---HcCCCcceEEEeccCHHHHHHHHHHhcCCCEEEECCCCCcCCcceecchHHH--HHHhcCCCCEEEEC
Confidence 555554433 334323567788999999999999999999999999999999998854 555 44556889999999
Q ss_pred ccCcc
Q 030516 157 CFGYY 161 (176)
Q Consensus 157 ~~~~~ 161 (176)
+.|+.
T Consensus 276 ~~~~~ 280 (290)
T 3mt0_A 276 PDDII 280 (290)
T ss_dssp CHHHH
T ss_pred CCCCC
Confidence 87763
No 20
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.76 E-value=2.7e-18 Score=133.71 Aligned_cols=152 Identities=14% Similarity=0.038 Sum_probs=112.6
Q ss_pred CEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCccc-CCCCCCccCCccch-------hHHHHHHHH
Q 030516 7 QTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVI-GLAGPGAVEVLPHV-------DSDFKKIAA 78 (176)
Q Consensus 7 ~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~-~~~~~~~~~~~~~~-------~~~~~~~~~ 78 (176)
++||||+|+|+.+..++++|..+|++. +++|+++|+++...... ...+. ....+++ .+...+..+
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~lA~~~-----~a~l~ll~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 73 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWLAYKL-----SAPLTVLFVVDTRLARIPELLDF--GALTVPVPVLRTELERALALRGE 73 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHHHHHH-----TCCEEEEEEEEHHHHTHHHHC---------CHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHHh-----CCcEEEEEEeccCCcccccccCc--hHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999984 78999999986543110 00000 0011122 334456677
Q ss_pred HHHHHHHHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCc-ccchhcc-cccchhhhheeecccccccc
Q 030516 79 RVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYG-AIKRYKS-TISCFIWYLIFSRVELGMVN 156 (176)
Q Consensus 79 ~~l~~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~-~l~~~l~-gvs~~~~~~~~~~~~~~~~~ 156 (176)
+.++++.+.+...+. ++++.+..|++.+.|+++ ++++|+||||+++++ .+.++++ ++++. .+.-+..||++|+
T Consensus 74 ~~l~~~~~~~~~~g~-~~~~~~~~g~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~~Gs~~~~--v~~~a~~PVlvv~ 148 (268)
T 3ab8_A 74 AVLERVRQSALAAGV-AVEAVLEEGVPHEAILRR--ARAADLLVLGRSGEAHGDGFGGLGSTADR--VLRASPVPVLLAP 148 (268)
T ss_dssp HHHHHHHHHHHHTTC-CEEEEEEEECHHHHHHHH--HTTCSEEEEESSCTTSCTTCCSCCHHHHH--HHHHCSSCEEEEC
T ss_pred HHHHHHHHHHHhCCC-CeEEEEecCCHHHHHHhh--ccCCCEEEEeccCCCccccccccchhHHH--HHHhCCCCEEEEC
Confidence 788888877777664 688889999999999999 779999999999999 8988775 45553 3455789999998
Q ss_pred ccCcccceeeeeeee
Q 030516 157 CFGYYSYLSIIKRTQ 171 (176)
Q Consensus 157 ~~~~~~~~~~~~~~~ 171 (176)
.... .|-+|..++|
T Consensus 149 ~~~~-~~~~ilv~~d 162 (268)
T 3ab8_A 149 GEPV-ELEGALLGYD 162 (268)
T ss_dssp SSCC-CCCEEEEECC
T ss_pred CCCC-CCCEEEEEEC
Confidence 6544 6777877766
No 21
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.75 E-value=9.2e-18 Score=133.63 Aligned_cols=147 Identities=16% Similarity=0.120 Sum_probs=107.2
Q ss_pred CCCEEEEEecCCH-------hHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHH
Q 030516 5 ETQTMVVGIDDSE-------QSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIA 77 (176)
Q Consensus 5 ~~~~ILVavD~s~-------~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (176)
.+++||||+|+|+ .+..++++|..+|.. ..++++|+++|+++..........+ ....+...++..+..
T Consensus 155 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~---~~~~a~l~ll~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 229 (319)
T 3olq_A 155 EYGTIVVAANLSNEESYHDALNLKLIELTNDLSHR---IQKDPDVHLLSAYPVAPINIAIELP--DFDPNLYNNALRGQH 229 (319)
T ss_dssp TTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHH---HCSSCCEEEEEEECCCSCSCCTTCT--TCCHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHh---ccCCCeEEEEEeecCcchhhhccCC--cccHHHHHHHHHHHH
Confidence 5799999999999 579999999999998 2116799999999876543111101 111122334444455
Q ss_pred HHHHHHHHHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcccchhcc-cccchhhhheeecccccccc
Q 030516 78 ARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKS-TISCFIWYLIFSRVELGMVN 156 (176)
Q Consensus 78 ~~~l~~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~-gvs~~~~~~~~~~~~~~~~~ 156 (176)
++.++.+ +.+++...++.++..|++.++|+++++++++||||||+++++.+.++++ ++++ ..+--++.||++|+
T Consensus 230 ~~~l~~~---~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dLiV~G~~g~~~~~~~~~Gsv~~--~vl~~~~~pVLvv~ 304 (319)
T 3olq_A 230 LIAMKEL---RQKFSIPEEKTHVKEGLPEQVIPQVCEELNAGIVVLGILGRTGLSAAFLGNTAE--QLIDHIKCDLLAIK 304 (319)
T ss_dssp HHHHHHH---HHHTTCCGGGEEEEESCHHHHHHHHHHHTTEEEEEEECCSCCSTHHHHHHHHHH--HHHTTCCSEEEEEC
T ss_pred HHHHHHH---HHHhCCCcccEEEecCCcHHHHHHHHHHhCCCEEEEeccCccCCccccccHHHH--HHHhhCCCCEEEEC
Confidence 5555544 4445433456778899999999999999999999999999999999885 4555 44556899999999
Q ss_pred ccCcc
Q 030516 157 CFGYY 161 (176)
Q Consensus 157 ~~~~~ 161 (176)
+.|+.
T Consensus 305 ~~~~~ 309 (319)
T 3olq_A 305 PDGFT 309 (319)
T ss_dssp CTTCC
T ss_pred CCCCC
Confidence 98853
No 22
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.70 E-value=1.9e-16 Score=125.85 Aligned_cols=136 Identities=20% Similarity=0.178 Sum_probs=102.1
Q ss_pred CCCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHH
Q 030516 4 AETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEE 83 (176)
Q Consensus 4 ~~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (176)
..+++||||+|+|+.+..++++|..+|... +++|+++|++++.... .. + .. ..++..+..++.+++
T Consensus 169 ~~~~~Ilv~~D~s~~s~~al~~a~~la~~~-----~a~l~ll~v~~~~~~~-~~--~--~~----~~~~~~~~~~~~l~~ 234 (309)
T 3cis_A 169 PQQAPVLVGVDGSSASELATAIAFDEASRR-----NVDLVALHAWSDVDVS-EW--P--GI----DWPATQSMAEQVLAE 234 (309)
T ss_dssp SCCCCEEEECCSSHHHHHHHHHHHHHHHHT-----TCCEEEEEESCSSCCT-TC--S--SC----CHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCChHHHHHHHHHHHHHHhc-----CCEEEEEEEeeccccc-CC--C--cc----cHHHHHHHHHHHHHH
Confidence 357899999999999999999999999983 7899999998754321 00 0 00 113334455555665
Q ss_pred HHHHhhh-cCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcccchhccc-ccchhhhheeeccccccccc
Q 030516 84 AKEICSS-KSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKST-ISCFIWYLIFSRVELGMVNC 157 (176)
Q Consensus 84 ~~~~~~~-~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~g-vs~~~~~~~~~~~~~~~~~~ 157 (176)
+.+.+.+ ++..+++..+..|++.++|+++++ ++||||||+++++.+.++++| +++ ..+.-++.||++|++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~--~adliV~G~~~~~~~~~~l~Gsv~~--~vl~~~~~pVlvv~~ 306 (309)
T 3cis_A 235 RLAGWQERYPNVAITRVVVRDQPARQLVQRSE--EAQLVVVGSRGRGGYAGMLVGSVGE--TVAQLARTPVIVARE 306 (309)
T ss_dssp HHTTHHHHCTTSCEEEEEESSCHHHHHHHHHT--TCSEEEEESSCSSCCTTCSSCHHHH--HHHHHCSSCEEEECC
T ss_pred HHHHHHhhCCCCcEEEEEEcCCHHHHHHHhhC--CCCEEEECCCCCCCccccccCcHHH--HHHhcCCCCEEEeCC
Confidence 5555433 233468888999999999999998 999999999999999998854 555 344557899999875
No 23
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.69 E-value=2.1e-16 Score=124.75 Aligned_cols=123 Identities=16% Similarity=0.147 Sum_probs=100.4
Q ss_pred CCCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHH
Q 030516 4 AETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEE 83 (176)
Q Consensus 4 ~~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (176)
..+++||||+|+++.+..++++|..++... +++|+++|++++.. .++.+++
T Consensus 168 ~~~~~Ilv~~d~s~~s~~al~~a~~la~~~-----~~~l~ll~v~~~~~------------------------~~~~l~~ 218 (294)
T 3loq_A 168 SLFDRVLVAYDFSKWADRALEYAKFVVKKT-----GGELHIIHVSEDGD------------------------KTADLRV 218 (294)
T ss_dssp CTTSEEEEECCSSHHHHHHHHHHHHHHHHH-----TCEEEEEEECSSSC------------------------CHHHHHH
T ss_pred ccCCEEEEEECCCHHHHHHHHHHHHHhhhc-----CCEEEEEEEccCch------------------------HHHHHHH
Confidence 467999999999999999999999999884 78999999987542 1234444
Q ss_pred HHHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcccchhcc-cccchhhhheeecccccccccc
Q 030516 84 AKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKS-TISCFIWYLIFSRVELGMVNCF 158 (176)
Q Consensus 84 ~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~-gvs~~~~~~~~~~~~~~~~~~~ 158 (176)
+.+.+.+.+. +++..+..|++.++|+++++++++||||||+++++.+.++++ ++++ ..+--++.||++|++.
T Consensus 219 ~~~~l~~~~~-~~~~~~~~g~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~~~Gs~~~--~vl~~~~~pvLvv~~~ 291 (294)
T 3loq_A 219 MEEVIGAEGI-EVHVHIESGTPHKAILAKREEINATTIFMGSRGAGSVMTMILGSTSE--SVIRRSPVPVFVCKRG 291 (294)
T ss_dssp HHHHHHHTTC-CEEEEEECSCHHHHHHHHHHHTTCSEEEEECCCCSCHHHHHHHCHHH--HHHHHCSSCEEEECSC
T ss_pred HHHHHHHcCC-cEEEEEecCCHHHHHHHHHHhcCcCEEEEeCCCCCCccceeeCcHHH--HHHhcCCCCEEEECCC
Confidence 5555555654 588889999999999999999999999999999999999885 4555 4445678999998864
No 24
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.53 E-value=4.1e-14 Score=109.92 Aligned_cols=115 Identities=19% Similarity=0.173 Sum_probs=89.7
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHH
Q 030516 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEA 84 (176)
Q Consensus 5 ~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (176)
.+++||||+|+|+.+..++++|..++... +++++++|++++. +..++.++++
T Consensus 153 ~~~~ilv~~d~s~~~~~al~~a~~la~~~-----~a~l~ll~v~~~~-----------------------~~~~~~l~~~ 204 (268)
T 3ab8_A 153 ELEGALLGYDASESAVRALHALAPLARAL-----GLGVRVVSVHEDP-----------------------ARAEAWALEA 204 (268)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHH-----TCCEEEEEECSSH-----------------------HHHHHHHHHH
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHhhhcC-----CCEEEEEEEcCcH-----------------------HHHHHHHHHH
Confidence 46899999999999999999999999874 7799999997532 1223445555
Q ss_pred HHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcccchhc-ccccchhhhheeecccccccc
Q 030516 85 KEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYK-STISCFIWYLIFSRVELGMVN 156 (176)
Q Consensus 85 ~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l-~gvs~~~~~~~~~~~~~~~~~ 156 (176)
.+.+.+.+. ++++.+..|++.++|+++++++ ||||||+ .+.+++ +++++ ..+.-++.||++++
T Consensus 205 ~~~l~~~~~-~~~~~~~~g~~~~~i~~~a~~~--dliV~G~----~~~~~~~Gs~~~--~vl~~~~~pvlvv~ 268 (268)
T 3ab8_A 205 EAYLRDHGV-EASALVLGGDAADHLLRLQGPG--DLLALGA----PVRRLVFGSTAE--RVIRNAQGPVLTAR 268 (268)
T ss_dssp HHHHHHTTC-CEEEEEECSCHHHHHHHHCCTT--EEEEEEC----CCSCCSSCCHHH--HHHHHCSSCEEEEC
T ss_pred HHHHHHcCC-ceEEEEeCCChHHHHHHHHHhC--CEEEECC----cccccEeccHHH--HHHhcCCCCEEEeC
Confidence 666666653 6888888999999999999977 9999999 566666 45555 34456788988774
No 25
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=96.29 E-value=0.15 Score=35.26 Aligned_cols=126 Identities=10% Similarity=0.038 Sum_probs=85.5
Q ss_pred CEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHH
Q 030516 7 QTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKE 86 (176)
Q Consensus 7 ~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 86 (176)
++|||-..-.-.+..+.+-...+.... .++++.++-..++ ... + .+-.++.++.+++.++...+
T Consensus 2 ~~vlVlae~tl~~~dl~~vl~~l~~~~----~~~~f~VLVPa~~-~~a----------~-~~e~~~a~~~A~~~l~~sl~ 65 (138)
T 2iel_A 2 ARYLVVAHRTAKSPELAAKLKELLAQD----PEARFVLLVPAVP-PPG----------W-VYEENEVRRRAEEEAAAAKR 65 (138)
T ss_dssp CEEEEECSTTTTCHHHHHHHHHHHHHC----TTCEEEEEEEEEC-CCC----------S-CC--CHHHHHHHHHHHHHHH
T ss_pred ceEEEEecCccCcHhHHHHHHHhhcCC----CceEEEEEecCCC-Ccc----------c-ccChHHHHHHHHHHHHHHHH
Confidence 688888886666655555545565551 1267655533322 111 0 11224566778888888888
Q ss_pred HhhhcCCcceE-EEEEcCChHHHHHHHHHhcC--CcEEEEeccCCcccchhc-ccccchhhhheeeccccc
Q 030516 87 ICSSKSVHDFV-VEVVEGDARNILCEAVEKHH--ASILVVGSHGYGAIKRYK-STISCFIWYLIFSRVELG 153 (176)
Q Consensus 87 ~~~~~~~~~v~-~~v~~G~~~~~I~~~a~~~~--~DlIV~Gs~g~~~l~~~l-~gvs~~~~~~~~~~~~~~ 153 (176)
.+...|. .++ -.+..++|-.+|...+.+.+ +|=||+-|..+. ..+|| ....+.+.. ..+||+
T Consensus 66 aL~~~G~-~a~~G~v~d~~Pl~AL~~~v~~~~~~~deiIV~T~Ph~-vs~~fh~DwasrAr~---~gvPVl 131 (138)
T 2iel_A 66 ALEAQGI-PVEEAKAGDISPLLAIEEELLAHPGAYQGIVLSTLPPG-LSRWLRLDVHTQAER---FGLPVI 131 (138)
T ss_dssp HHHTTTC-CCSEEEEEESSHHHHHHHHHHHSTTSCSEEEEEECCTT-TCHHHHTTHHHHGGG---GSSCEE
T ss_pred HHHHcCC-cccccccCCCChHHHHHHHHHhcCCCCceEEEEcCCch-HHHHHhccHHHHHHh---cCCCEE
Confidence 8888775 576 99999999999999999999 999999999985 66676 555555555 266665
No 26
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=93.67 E-value=1.1 Score=37.16 Aligned_cols=99 Identities=21% Similarity=0.292 Sum_probs=63.6
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHH
Q 030516 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEA 84 (176)
Q Consensus 5 ~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (176)
...+|+|++++..+|..++..+..+.... +.++.++|+-..... ....+..+.+
T Consensus 17 ~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~-----~~~v~avhvdhglrg---------------------~~s~~~~~~v 70 (464)
T 3a2k_A 17 EGAAVIVGVSGGPDSLALLHVFLSLRDEW-----KLQVIAAHVDHMFRG---------------------RESEEEMEFV 70 (464)
T ss_dssp CSSBEEEECCSSHHHHHHHHHHHHHHHTT-----TCBCEEEEEECTTCT---------------------HHHHHHHHHH
T ss_pred CCCEEEEEEcCcHHHHHHHHHHHHHHHHc-----CCeEEEEEEECCCCc---------------------cccHHHHHHH
Confidence 35789999999999999999988877662 568999999432210 1112233344
Q ss_pred HHHhhhcCCcceEEEEEc--------CC-h--------HHHHHHHHHhcCCcEEEEeccCCcc
Q 030516 85 KEICSSKSVHDFVVEVVE--------GD-A--------RNILCEAVEKHHASILVVGSHGYGA 130 (176)
Q Consensus 85 ~~~~~~~~~~~v~~~v~~--------G~-~--------~~~I~~~a~~~~~DlIV~Gs~g~~~ 130 (176)
.+.+...+. ++.+.-.. |. + -..+.+++++++++.|+.|.|....
T Consensus 71 ~~~~~~lgi-~~~v~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~dD~ 132 (464)
T 3a2k_A 71 KRFCVERRI-LCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKHQAGYVAVGHHGDDQ 132 (464)
T ss_dssp HHHHHHTTC-EEEEEECCCHHHHTTTTCCSHHHHHHHHHHHHHHHHHTTTCCEEECCCCHHHH
T ss_pred HHHHHHcCC-cEEEEEechhhhhhccCCCHHHHHHHHHHHHHHHHHHHcCcCEEEEeCChHHH
Confidence 555656654 34433221 11 1 1456677888999999999876543
No 27
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=92.31 E-value=2.4 Score=33.13 Aligned_cols=97 Identities=14% Similarity=0.104 Sum_probs=59.0
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcE-EEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHH
Q 030516 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFK-LVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEE 83 (176)
Q Consensus 5 ~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~-v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (176)
..++|+|++++..+|..++..+.++.... +.+ +.++|+-..... ...+..+.
T Consensus 23 ~~~~vlva~SGG~DS~~Ll~ll~~~~~~~-----g~~~v~av~vd~g~r~----------------------~s~~~~~~ 75 (317)
T 1wy5_A 23 GERRVLIAFSGGVDSVVLTDVLLKLKNYF-----SLKEVALAHFNHMLRE----------------------SAERDEEF 75 (317)
T ss_dssp SCCEEEEECCSSHHHHHHHHHHHHSTTTT-----TCSEEEEEEEECCSST----------------------HHHHHHHH
T ss_pred CCCEEEEEecchHHHHHHHHHHHHHHHHc-----CCCEEEEEEEECCCCc----------------------ccHHHHHH
Confidence 35789999999999999998887776552 457 999998432110 01112223
Q ss_pred HHHHhhhcCCcceEEEEEc--------C-Ch--------HHHHHHHHHhcCCcEEEEeccCCc
Q 030516 84 AKEICSSKSVHDFVVEVVE--------G-DA--------RNILCEAVEKHHASILVVGSHGYG 129 (176)
Q Consensus 84 ~~~~~~~~~~~~v~~~v~~--------G-~~--------~~~I~~~a~~~~~DlIV~Gs~g~~ 129 (176)
+.+.+...+. ++.+.-.. | ++ -..+.+.+++++++.|+.|.+...
T Consensus 76 v~~~a~~lgi-~~~v~~~~~~~~~~~~~~~~e~~ar~~Ry~~l~~~a~~~g~~~i~~Gh~~dD 137 (317)
T 1wy5_A 76 CKEFAKERNM-KIFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHLND 137 (317)
T ss_dssp HHHHHHHHTC-CEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTTCSEEECCCCHHH
T ss_pred HHHHHHHcCC-cEEEEEEechhhhccCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeCchhH
Confidence 3344444453 33332211 1 11 124566788899999999987543
No 28
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=92.26 E-value=0.94 Score=37.74 Aligned_cols=93 Identities=15% Similarity=0.120 Sum_probs=64.3
Q ss_pred cCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHHHhhhcCC
Q 030516 14 DDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSV 93 (176)
Q Consensus 14 D~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 93 (176)
|..-....||..|.+.+.+. +.+|..|.+.++.... .......-..+.+..+.+.+.+.+.
T Consensus 46 DLRl~DN~aL~~A~~~a~~~-----~~~v~~vfi~dp~~~~--------------~~~~r~~Fl~~sL~~L~~~L~~~G~ 106 (482)
T 2xry_A 46 DQRAEDNWALLFSRAIAKEA-----NVPVVVVFCLTDEFLE--------------AGIRQYEFMLKGLQELEVSLSRKKI 106 (482)
T ss_dssp CCCSSSCHHHHHHHHHHHHH-----TSCEEEEEEECTTGGG--------------SCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCccccHHHHHHHHHHHHc-----CCcEEEEEEeChhhhc--------------cCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45555567888888877652 4478888888764321 1123334455666777777777664
Q ss_pred cceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCC
Q 030516 94 HDFVVEVVEGDARNILCEAVEKHHASILVVGSHGY 128 (176)
Q Consensus 94 ~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~ 128 (176)
...+..|++.+.|.+.+++.+++.|+.-....
T Consensus 107 ---~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~ 138 (482)
T 2xry_A 107 ---PSFFLRGDPGEKISRFVKDYNAGTLVTDFSPL 138 (482)
T ss_dssp ---CEEEEESCHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred ---cEEEEeCCHHHHHHHHHHHcCCCEEEEecccc
Confidence 24556799999999999999999999876554
No 29
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=91.39 E-value=1.1 Score=37.82 Aligned_cols=90 Identities=16% Similarity=0.103 Sum_probs=62.4
Q ss_pred cCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHHHhhhcCC
Q 030516 14 DDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSV 93 (176)
Q Consensus 14 D~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 93 (176)
|+.-....||..|++.|.+. +.+|+.|++.++..... ........-..+-|..+.+.+.+.+.
T Consensus 47 DLRl~DN~AL~~A~~~a~~~-----~~pVl~vfildp~~~~~------------~~~~~r~~FL~~sL~dL~~~L~~lG~ 109 (506)
T 3umv_A 47 DQRLADNWALLHAAGLAAAS-----ASPLAVAFALFPRPFLL------------SARRRQLGFLLRGLRRLAADAAARHL 109 (506)
T ss_dssp CCCSTTCHHHHHHHHHHHHH-----TCCEEEEEECCCTTCGG------------GCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcchhhcHHHHHHHHhhhhc-----CCCEEEEEeccchhhcc------------CCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 55556668899999888752 55899999987652210 01123334556666677777777663
Q ss_pred cceEEEEEcCChHHHHHHHHHhcCCcEEEEe
Q 030516 94 HDFVVEVVEGDARNILCEAVEKHHASILVVG 124 (176)
Q Consensus 94 ~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~G 124 (176)
...+..|++.+. .+.+++.+++.|+.-
T Consensus 110 ---~L~v~~G~p~~v-~~L~~~~~a~~V~~d 136 (506)
T 3umv_A 110 ---PFFLFTGGPAEI-PALVQRLGASTLVAD 136 (506)
T ss_dssp ---CEEEESSCTTHH-HHHHHHTTCSEEEEC
T ss_pred ---ceEEEecChHHH-HHHHHhcCCCEEEec
Confidence 255678999999 999999999999973
No 30
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=90.77 E-value=2.7 Score=35.55 Aligned_cols=101 Identities=11% Similarity=0.047 Sum_probs=66.3
Q ss_pred EEEEEe--cCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHH
Q 030516 8 TMVVGI--DDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAK 85 (176)
Q Consensus 8 ~ILVav--D~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 85 (176)
.+|+=+ |..-....||..|++.+.. .+.+.+|..|.+.++..... .........-..+.+..+.
T Consensus 30 ~vl~WfrrDLRl~DN~aL~~A~~~~~~---~~~~~pv~~vfi~dp~~~~~-----------~~~~~~r~~Fl~~sL~~L~ 95 (543)
T 2wq7_A 30 TLVHWFRKGLRLHDNPALSHIFTAANA---APGRYFVRPIFILDPGILDW-----------MQVGANRWRFLQQTLEDLD 95 (543)
T ss_dssp EEEEEESSCCCSTTCHHHHHHHHHHHH---STTTEEEEEEEEECTTGGGC-----------TTSCHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCcCcchHHHHHHHHHhCcc---ccCCCeEEEEEEECchhhcc-----------cCCCHHHHHHHHHHHHHHH
Confidence 435544 6666677888888877653 00145798999987653310 0012233345566667777
Q ss_pred HHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEec
Q 030516 86 EICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGS 125 (176)
Q Consensus 86 ~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs 125 (176)
+.+.+.+. + ..+..|++.+.|.+.+++.+++.|+.-.
T Consensus 96 ~~L~~~G~-~--L~v~~g~~~~~l~~l~~~~~~~~v~~~~ 132 (543)
T 2wq7_A 96 NQLRKLNS-R--LFVVRGKPAEVFPRIFKSWRVEMLTFET 132 (543)
T ss_dssp HHHHHTTC-C--CEEEESCHHHHHHHHHHHTTEEEEEEEC
T ss_pred HHHHHCCC-e--EEEEeCCHHHHHHHHHHHcCCCEEEEec
Confidence 77777663 2 3456799999999999999999998863
No 31
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=84.82 E-value=14 Score=30.74 Aligned_cols=102 Identities=12% Similarity=0.073 Sum_probs=63.2
Q ss_pred CEEEEEe--cCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHH
Q 030516 7 QTMVVGI--DDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEA 84 (176)
Q Consensus 7 ~~ILVav--D~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (176)
+.+|+=+ |..-....||..|++ . +.+|..|.+.++........+ ..........-..+.+..+
T Consensus 6 ~~~l~WfrrDLRl~DN~aL~~A~~---~------~~~v~~vfi~dp~~~~~~~~~------~~~~~~~r~~Fl~~sL~~L 70 (489)
T 1np7_A 6 PTVLVWFRNDLRLHDHEPLHRALK---S------GLAITAVYCYDPRQFAQTHQG------FAKTGPWRSNFLQQSVQNL 70 (489)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHH---T------TSEEEEEEEECGGGGSBCTTS------CBSSCHHHHHHHHHHHHHH
T ss_pred CcEEEEeCCCCCcchHHHHHHHHh---c------CCCEEEEEEECchhhcccccc------cCCCCHHHHHHHHHHHHHH
Confidence 3445544 666666777777753 2 237778888775432100000 0112233344556667777
Q ss_pred HHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEecc
Q 030516 85 KEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSH 126 (176)
Q Consensus 85 ~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~ 126 (176)
.+.+.+.+. ...+..|++.+.|.+.+++.+++.|+.-..
T Consensus 71 ~~~L~~~G~---~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~ 109 (489)
T 1np7_A 71 AESLQKVGN---KLLVTTGLPEQVIPQIAKQINAKTIYYHRE 109 (489)
T ss_dssp HHHHHHTTC---CEEEEESCHHHHHHHHHHHTTEEEEEEECC
T ss_pred HHHHHHCCC---cEEEEECCHHHHHHHHHHHcCCCEEEEecc
Confidence 777777764 245567999999999999999998888743
No 32
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=83.93 E-value=1.6 Score=36.98 Aligned_cols=92 Identities=14% Similarity=0.050 Sum_probs=59.9
Q ss_pred cCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHHHhhhc--
Q 030516 14 DDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSK-- 91 (176)
Q Consensus 14 D~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-- 91 (176)
|+.-....||..|++.+.. +.+|..|++.++..... .........-..+-|..+.+.+.+.
T Consensus 13 DLRl~DN~AL~~A~~~~~~------g~~vl~vfi~dp~~~~~-----------~~~~~~r~~Fl~~sL~~L~~~L~~~~~ 75 (538)
T 3tvs_A 13 GLRLHDNPALLAALADKDQ------GIALIPVFIFDGESAGT-----------KNVGYNRMRFLLDSLQDIDDQLQAATD 75 (538)
T ss_dssp CCCSSSCHHHHTTTGGGTT------TCBCCEEEEECSSSSCS-----------TTCCHHHHHHHHHHHHHHHHHGGGSCS
T ss_pred CcchhhhHHHHHHHHhCCC------CCCEEEEEecChhhhcc-----------CCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4554555677666554432 45788899987653210 0011233345566677777777776
Q ss_pred -CCcceEEEEEcCChHHHHHHHHHhcCCcEEEEec
Q 030516 92 -SVHDFVVEVVEGDARNILCEAVEKHHASILVVGS 125 (176)
Q Consensus 92 -~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs 125 (176)
+. ...+..|++.+.|.+.+++.+++.|+.-.
T Consensus 76 ~G~---~L~v~~G~~~~vl~~L~~~~~a~~V~~n~ 107 (538)
T 3tvs_A 76 GRG---RLLVFEGEPAYIFRRLHEQVRLHRICIEQ 107 (538)
T ss_dssp SSS---CCEEEESCHHHHHHHHHHHHCEEEECEEC
T ss_pred CCC---eEEEEeCCHHHHHHHHHHHcCCCEEEEcc
Confidence 53 24556799999999999999999998644
No 33
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=79.47 E-value=7.3 Score=28.10 Aligned_cols=57 Identities=12% Similarity=0.249 Sum_probs=39.7
Q ss_pred HHHHHHHHhhhcCCcceEEEEEcCC-hHHHHHHHH---HhcCCcEEEEeccCCcccchhccc
Q 030516 80 VVEEAKEICSSKSVHDFVVEVVEGD-ARNILCEAV---EKHHASILVVGSHGYGAIKRYKST 137 (176)
Q Consensus 80 ~l~~~~~~~~~~~~~~v~~~v~~G~-~~~~I~~~a---~~~~~DlIV~Gs~g~~~l~~~l~g 137 (176)
.++++.+.+++++. +++..+..-. ..+.+.+++ ++.+++.||.|+-+...+.+++-+
T Consensus 37 v~~~a~~~L~~~gI-~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahLpGvvAa 97 (181)
T 4b4k_A 37 TMKYACDILDELNI-PYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAA 97 (181)
T ss_dssp HHHHHHHHHHHTTC-CEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHHHHT
T ss_pred HHHHHHHHHHHcCC-CeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccccchhhHHh
Confidence 44555666667775 6888887643 444455555 557899999999988888887643
No 34
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=79.21 E-value=7 Score=33.09 Aligned_cols=107 Identities=7% Similarity=0.003 Sum_probs=63.6
Q ss_pred CCEEEEEe--cCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHH
Q 030516 6 TQTMVVGI--DDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEE 83 (176)
Q Consensus 6 ~~~ILVav--D~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (176)
.+.+|+=+ |+.-....||..|++ . +.+|+.|++.++............. ..........-..+.|..
T Consensus 4 ~~~~lvWFRrDLRl~DN~AL~~A~~---~------~~~vlpvfi~dp~~~~~~~~~~~~g--~~~~g~~r~~Fl~~sL~~ 72 (537)
T 3fy4_A 4 GSGSLIWFRKGLRVHDNPALEYASK---G------SEFMYPVFVIDPHYMESDPSAFSPG--SSRAGVNRIRFLLESLKD 72 (537)
T ss_dssp CCEEEEEESSCCCSTTCHHHHHHHT---T------CSCEEEEEEECHHHHSCCTTSSSSB--CSSCBHHHHHHHHHHHHH
T ss_pred CCcEEEEeCCCcccchhHHHHHHHh---c------CCCEEEEEEeChhhhcccccccccc--cccCCHHHHHHHHHHHHH
Confidence 34455544 666666677777653 2 3478889988753211000000000 001122334455666677
Q ss_pred HHHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEecc
Q 030516 84 AKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSH 126 (176)
Q Consensus 84 ~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~ 126 (176)
+.+.+.+.+. ...+..|++.+.|.+.+++.+++.|+.-..
T Consensus 73 L~~~L~~~G~---~L~v~~G~~~~vl~~L~~~~~~~~V~~n~~ 112 (537)
T 3fy4_A 73 LDSSLKKLGS---RLLVFKGEPGEVLVRCLQEWKVKRLCFEYD 112 (537)
T ss_dssp HHHHHHHTTC---CCEEEESCHHHHHHHHHTTSCEEEEEECCC
T ss_pred HHHHHHHcCC---ceEEEECCHHHHHHHHHHHcCCCEEEEecc
Confidence 7777777663 244567999999999999999999988653
No 35
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=78.42 E-value=17 Score=28.52 Aligned_cols=37 Identities=16% Similarity=0.236 Sum_probs=29.8
Q ss_pred CCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEE
Q 030516 6 TQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHA 47 (176)
Q Consensus 6 ~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv 47 (176)
+.+++|++.+..+|...+..+.+++... +.++.++|+
T Consensus 46 ~~~ivVa~SGGkDS~vLL~Ll~~~~~~~-----~~~i~vv~v 82 (325)
T 1zun_A 46 FDNPVMLYSIGKDSAVMLHLARKAFFPG-----KLPFPVMHV 82 (325)
T ss_dssp CSSEEEECCSSHHHHHHHHHHHHHHTTS-----CCSSCEEEE
T ss_pred CCCEEEEEcChHHHHHHHHHHHHhcccc-----CCCEEEEEE
Confidence 5689999999999999999988876541 346778887
No 36
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=77.97 E-value=3.8 Score=30.28 Aligned_cols=37 Identities=5% Similarity=0.082 Sum_probs=31.3
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEE
Q 030516 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHA 47 (176)
Q Consensus 5 ~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv 47 (176)
..++|++++-++..+-++.+.+..|.+. |++|+++-.
T Consensus 3 ~~k~IllgvTGaiaa~k~~~ll~~L~~~------g~eV~vv~T 39 (209)
T 3zqu_A 3 GPERITLAMTGASGAQYGLRLLDCLVQE------EREVHFLIS 39 (209)
T ss_dssp SCSEEEEEECSSSCHHHHHHHHHHHHHT------TCEEEEEEC
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHC------CCEEEEEEC
Confidence 3489999999999999999999888776 778888754
No 37
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=76.37 E-value=25 Score=28.13 Aligned_cols=40 Identities=13% Similarity=0.252 Sum_probs=29.3
Q ss_pred CCCCCCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEec
Q 030516 1 MATAETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (176)
Q Consensus 1 m~~~~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~ 49 (176)
|.....++|+|++++.-+|..++..+.+ . +.+|+.+|+..
T Consensus 4 ~~~~~~~kVlVa~SGGvDSsv~a~lL~~---~------G~~V~~v~~~~ 43 (376)
T 2hma_A 4 MSDNSKTRVVVGMSGGVDSSVTALLLKE---Q------GYDVIGIFMKN 43 (376)
T ss_dssp -CCGGGSEEEEECCSSHHHHHHHHHHHH---T------TCEEEEEEEEC
T ss_pred hhhCCCCeEEEEEeCHHHHHHHHHHHHH---c------CCcEEEEEEEC
Confidence 4445667999999999999887766543 2 45888888854
No 38
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=74.68 E-value=19 Score=30.29 Aligned_cols=103 Identities=9% Similarity=0.003 Sum_probs=62.2
Q ss_pred CEEEEEe--cCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHH
Q 030516 7 QTMVVGI--DDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEA 84 (176)
Q Consensus 7 ~~ILVav--D~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (176)
+++|+=+ |..-....||..|++. +.+|..|.+.++......... . ..........-..+.|..+
T Consensus 40 ~~~l~WfrrDLRl~DN~AL~~A~~~---------~~~v~~vfi~dp~~~~~~~~~-~----~~~~~~~r~~Fl~~sL~~L 105 (525)
T 2j4d_A 40 GVTILWFRNDLRVLDNDALYKAWSS---------SDTILPVYCLDPRLFHTTHFF-N----FPKTGALRGGFLMECLVDL 105 (525)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHHT---------CSEEEEEEEECGGGGSBCTTT-C----CBSSCHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCcCcchhHHHHHHHhc---------CCcEEEEEEECchhhcccccc-c----CCCCCHHHHHHHHHHHHHH
Confidence 3445444 5555666777766542 237888888775432100000 0 0012233344556667777
Q ss_pred HHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEecc
Q 030516 85 KEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSH 126 (176)
Q Consensus 85 ~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~ 126 (176)
.+.+.+.+. . ..+..|++.+.|.+.+++.+++.|+.-..
T Consensus 106 ~~~L~~~G~-~--L~v~~g~~~~~l~~l~~~~~~~~V~~~~~ 144 (525)
T 2j4d_A 106 RKNLMKRGL-N--LLIRSGKPEEILPSLAKDFGARTVFAHKE 144 (525)
T ss_dssp HHHHHHTTC-C--CEEEESCHHHHHHHHHHHHTCSEEEEECC
T ss_pred HHHHHHcCC-e--EEEEeCCHHHHHHHHHHHcCCCEEEEecc
Confidence 777777663 2 44567999999999999999999988633
No 39
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=74.62 E-value=16 Score=30.37 Aligned_cols=88 Identities=8% Similarity=0.073 Sum_probs=56.0
Q ss_pred cCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHHHhhhcCC
Q 030516 14 DDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSV 93 (176)
Q Consensus 14 D~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 93 (176)
|..-....||..|.+. . + +|..|.+.++..... .........-..+.+..+.+.+.+.+.
T Consensus 12 DLRl~Dn~aL~~A~~~--~------~-~v~~vfi~dp~~~~~-----------~~~~~~r~~fl~~sL~~L~~~L~~~G~ 71 (484)
T 1owl_A 12 DLRLSDNIGLAAARAQ--S------A-QLIGLFCLDPQILQS-----------ADMAPARVAYLQGCLQELQQRYQQAGS 71 (484)
T ss_dssp CCCSSSCHHHHHHHHH--C------S-CEEEEEEECHHHHTC-----------TTCCHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCcchhHHHHHHHhc--C------C-CEEEEEEEcchhhcC-----------CCCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence 5555556677766552 2 1 677888876532210 001123334455666666667766664
Q ss_pred cceEEEEEcCChHHHHHHHHHhcCCcEEEEe
Q 030516 94 HDFVVEVVEGDARNILCEAVEKHHASILVVG 124 (176)
Q Consensus 94 ~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~G 124 (176)
...+..|++.+.|.+.+++.+++.|+.-
T Consensus 72 ---~L~v~~g~~~~~l~~l~~~~~~~~v~~~ 99 (484)
T 1owl_A 72 ---RLLLLQGDPQHLIPQLAQQLQAEAVYWN 99 (484)
T ss_dssp ---CEEEEESCHHHHHHHHHHHTTCSEEEEE
T ss_pred ---eEEEEeCCHHHHHHHHHHHcCCCEEEEe
Confidence 2445679999999999999999999884
No 40
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=74.17 E-value=33 Score=27.92 Aligned_cols=36 Identities=11% Similarity=0.285 Sum_probs=28.1
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEec
Q 030516 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (176)
Q Consensus 5 ~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~ 49 (176)
..+++++++++.-+|..++.++.+. +.+|+.+|+-.
T Consensus 4 ~~~kVvvalSGGlDSsvll~lL~e~---------G~eV~av~vd~ 39 (413)
T 2nz2_A 4 SKGSVVLAYSGGLDTSCILVWLKEQ---------GYDVIAYLANI 39 (413)
T ss_dssp -CEEEEEECCSSHHHHHHHHHHHHT---------TEEEEEEEEES
T ss_pred CCCeEEEEEcChHHHHHHHHHHHHc---------CCEEEEEEEEC
Confidence 3578999999999999888887542 44888888854
No 41
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=73.94 E-value=9 Score=27.45 Aligned_cols=57 Identities=14% Similarity=0.227 Sum_probs=39.4
Q ss_pred HHHHHHHHhhhcCCcceEEEEEcCC-hHHHHHHH---HHhcCCcEEEEeccCCcccchhccc
Q 030516 80 VVEEAKEICSSKSVHDFVVEVVEGD-ARNILCEA---VEKHHASILVVGSHGYGAIKRYKST 137 (176)
Q Consensus 80 ~l~~~~~~~~~~~~~~v~~~v~~G~-~~~~I~~~---a~~~~~DlIV~Gs~g~~~l~~~l~g 137 (176)
.++++...+++++. +++..+..-+ ..+.+.++ +++.+++.||.++-+...+.+++-|
T Consensus 27 v~~~a~~~l~~~gi-~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLpgvvA~ 87 (173)
T 4grd_A 27 VMKHAVAILQEFGV-PYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLPGMLAA 87 (173)
T ss_dssp HHHHHHHHHHHTTC-CEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHHHHHHH
T ss_pred HHHHHHHHHHHcCC-CEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccccccchhhhee
Confidence 44455556667774 5888887643 44445455 4557899999999999988887654
No 42
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=73.69 E-value=19 Score=26.58 Aligned_cols=91 Identities=10% Similarity=-0.005 Sum_probs=50.6
Q ss_pred CCCCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHH
Q 030516 3 TAETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVE 82 (176)
Q Consensus 3 ~~~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (176)
|...++|.|-+.++.....++-.+. .. ...+++|.+| +.+.+... .
T Consensus 5 ~~~~~ri~vl~SG~gsnl~all~~~---~~---~~~~~~I~~V--is~~~~a~---------------~----------- 50 (215)
T 3kcq_A 5 MKKELRVGVLISGRGSNLEALAKAF---ST---EESSVVISCV--ISNNAEAR---------------G----------- 50 (215)
T ss_dssp --CCEEEEEEESSCCHHHHHHHHHT---CC---C-CSEEEEEE--EESCTTCT---------------H-----------
T ss_pred CCCCCEEEEEEECCcHHHHHHHHHH---Hc---CCCCcEEEEE--EeCCcchH---------------H-----------
Confidence 3456789999999988766665553 22 0012455544 43322110 0
Q ss_pred HHHHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcc
Q 030516 83 EAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGA 130 (176)
Q Consensus 83 ~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~ 130 (176)
.+.+.+++.. +...-...-..+++.+..++.++|+||+..-++--
T Consensus 51 --l~~A~~~gIp-~~~~~~~~~~~~~~~~~L~~~~~Dlivlagy~~IL 95 (215)
T 3kcq_A 51 --LLIAQSYGIP-TFVVKRKPLDIEHISTVLREHDVDLVCLAGFMSIL 95 (215)
T ss_dssp --HHHHHHTTCC-EEECCBTTBCHHHHHHHHHHTTCSEEEESSCCSCC
T ss_pred --HHHHHHcCCC-EEEeCcccCChHHHHHHHHHhCCCEEEEeCCceEe
Confidence 1344455532 22211111134789999999999999999887643
No 43
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=73.08 E-value=7.2 Score=29.56 Aligned_cols=79 Identities=14% Similarity=0.173 Sum_probs=49.0
Q ss_pred CCHhHHHHHHHHHHHhcccCCCCCCc--EEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHHHhhhcC
Q 030516 15 DSEQSTYALQWTLDHFFANSTVNPPF--KLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKS 92 (176)
Q Consensus 15 ~s~~s~~al~~a~~la~~~~~~~~~a--~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 92 (176)
.++.+..|++.|.++..+ +. +|+++.+-++. .++.++++.+. |
T Consensus 35 lnp~d~~Ale~A~~Lke~------g~~~~V~av~~G~~~-------------------------a~~~lr~ala~----G 79 (252)
T 1efp_B 35 MNPFDEIAVEEAIRLKEK------GQAEEIIAVSIGVKQ-------------------------AAETLRTALAM----G 79 (252)
T ss_dssp ECHHHHHHHHHHHHHHTT------TSCSEEEEEEEESGG-------------------------GHHHHHHHHHH----T
T ss_pred CCHHHHHHHHHHHHHHhc------CCCceEEEEEeCChh-------------------------HHHHHHHHHhc----C
Confidence 456788999999999875 33 88888775311 11223322211 3
Q ss_pred CcceEEEEE------cC-C---hHHHHHHHHHhcCCcEEEEeccCCc
Q 030516 93 VHDFVVEVV------EG-D---ARNILCEAVEKHHASILVVGSHGYG 129 (176)
Q Consensus 93 ~~~v~~~v~------~G-~---~~~~I~~~a~~~~~DlIV~Gs~g~~ 129 (176)
. +--+++. .+ + .+..|...+++.++|+|++|....+
T Consensus 80 a-D~vi~v~~d~~~~~~~~~~~~a~~La~~i~~~~~dlVl~G~~s~d 125 (252)
T 1efp_B 80 A-DRAILVVAADDVQQDIEPLAVAKILAAVARAEGTELIIAGKQAID 125 (252)
T ss_dssp C-SEEEEEECCSSTTCCCCHHHHHHHHHHHHHHHTCSEEEEESCCTT
T ss_pred C-CEEEEEecChhhcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccC
Confidence 2 1222232 12 2 3567888888889999999998864
No 44
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=72.75 E-value=26 Score=25.77 Aligned_cols=88 Identities=14% Similarity=0.036 Sum_probs=56.1
Q ss_pred CCEEEEEecC-----CHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHH
Q 030516 6 TQTMVVGIDD-----SEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARV 80 (176)
Q Consensus 6 ~~~ILVavD~-----s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (176)
+++|||-.+- .+.+..++..|.+++... |.+|+++-+-+.... .
T Consensus 3 m~~ilV~~E~~~g~l~~~s~ell~~A~~La~~~-----g~~v~av~~G~~~~~--------------------------~ 51 (217)
T 3ih5_A 3 ANNLFVYCEIEEGIVADVSLELLTKGRSLANEL-----NCQLEAVVAGTGLKE--------------------------I 51 (217)
T ss_dssp CCCEEEECCEETTEECHHHHHHHHHHHHHHHHH-----TCCEEEEEEESCCTT--------------------------T
T ss_pred cccEEEEEECcCCEECHHHHHHHHHHHHHHHhc-----CCeEEEEEECCCHHH--------------------------H
Confidence 4678988873 467899999999999873 558888866442110 1
Q ss_pred HHHHHHHhhhcCCcceEEEEEc----C-C---hHHHHHHHHHhcCCcEEEEeccCCc
Q 030516 81 VEEAKEICSSKSVHDFVVEVVE----G-D---ARNILCEAVEKHHASILVVGSHGYG 129 (176)
Q Consensus 81 l~~~~~~~~~~~~~~v~~~v~~----G-~---~~~~I~~~a~~~~~DlIV~Gs~g~~ 129 (176)
++ .+..+|.. --+.+.. + + .++.|.+.++++++|+|++|....+
T Consensus 52 ~~----~~~~~Gad-~v~~v~~~~~~~~~~~~~a~~l~~~i~~~~p~~Vl~g~t~~G 103 (217)
T 3ih5_A 52 EK----QILPYGVD-KLHVFDAEGLYPYTSLPHTSILVNLFKEEQPQICLMGATVIG 103 (217)
T ss_dssp HH----HHGGGTCS-EEEEEECGGGSSCCHHHHHHHHHHHHHHHCCSEEEEECSHHH
T ss_pred HH----HHHhcCCC-EEEEecCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcch
Confidence 11 12233422 2222321 1 1 4678899999999999999976543
No 45
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=71.76 E-value=5 Score=33.28 Aligned_cols=92 Identities=8% Similarity=0.043 Sum_probs=55.6
Q ss_pred cCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHHHhhhcCC
Q 030516 14 DDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSV 93 (176)
Q Consensus 14 D~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 93 (176)
|+.-....||..|++. .. + +|..|++.++..... .........-..+.+..+.+.+.+.|.
T Consensus 10 DLRl~DN~aL~~A~~~-~~------~-~v~~vfi~dp~~~~~-----------~~~~~~r~~fl~~sL~~L~~~L~~~G~ 70 (471)
T 1dnp_A 10 DLRLHDNLALAAACRN-SS------A-RVLALYIATPRQWAT-----------HNMSPRQAELINAQLNGLQIALAEKGI 70 (471)
T ss_dssp CCCSTTCHHHHHHSSS-TT------S-EEEEEEEECHHHHHH-----------TTCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCcccchHHHHHHHhC-CC------C-CEEEEEEECchhhcc-----------CCCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence 3333444566666442 12 3 899999987532110 001123334455666677777777664
Q ss_pred cceEEEEE--cCChHHHHHHHHHhcCCcEEEEec
Q 030516 94 HDFVVEVV--EGDARNILCEAVEKHHASILVVGS 125 (176)
Q Consensus 94 ~~v~~~v~--~G~~~~~I~~~a~~~~~DlIV~Gs 125 (176)
++.+... .|++.+.|.+.+++.+++.|+.-.
T Consensus 71 -~L~v~~~~~~g~~~~~l~~l~~~~~~~~v~~~~ 103 (471)
T 1dnp_A 71 -PLLFREVDDFVASVEIVKQVCAENSVTHLFYNY 103 (471)
T ss_dssp -CEEEEECSSHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred -eEEEEEccCCCCHHHHHHHHHHHcCCCEEEEec
Confidence 3333222 799999999999999999998843
No 46
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=71.30 E-value=4.2 Score=29.32 Aligned_cols=37 Identities=5% Similarity=-0.059 Sum_probs=30.3
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEE
Q 030516 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHA 47 (176)
Q Consensus 5 ~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv 47 (176)
++++|++++-++..+.++.+.+..|.+. |++|+++-.
T Consensus 1 ~~k~IllgvTGs~aa~k~~~l~~~L~~~------g~~V~vv~T 37 (181)
T 1g63_A 1 MYGKLLICATASINVININHYIVELKQH------FDEVNILFS 37 (181)
T ss_dssp CCCCEEEEECSCGGGGGHHHHHHHHTTT------SSCEEEEEC
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHC------CCEEEEEEc
Confidence 3589999999999999999998888665 678877743
No 47
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=71.09 E-value=6.5 Score=29.91 Aligned_cols=77 Identities=14% Similarity=0.233 Sum_probs=47.5
Q ss_pred HhHHHHHHHHHHHhcccCCCCCCc--EEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHHHhhhcCCc
Q 030516 17 EQSTYALQWTLDHFFANSTVNPPF--KLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVH 94 (176)
Q Consensus 17 ~~s~~al~~a~~la~~~~~~~~~a--~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 94 (176)
+.+..|++.|.++..+ |. +|+++.+-++. .++.++++.+. |.
T Consensus 40 p~d~~Ale~A~~Lke~------g~~~~V~av~~G~~~-------------------------a~~~lr~ala~----Ga- 83 (255)
T 1efv_B 40 PFCEIAVEEAVRLKEK------KLVKEVIAVSCGPAQ-------------------------CQETIRTALAM----GA- 83 (255)
T ss_dssp HHHHHHHHHHHHHHHT------TSCSEEEEEEEESTT-------------------------HHHHHHHHHHH----TC-
T ss_pred HHHHHHHHHHHHHHhc------CCCceEEEEEeCChh-------------------------HHHHHHHHHhc----CC-
Confidence 4677999999999875 33 88888775421 12223322211 32
Q ss_pred ceEEEEE------cC-C---hHHHHHHHHHhcCCcEEEEeccCCc
Q 030516 95 DFVVEVV------EG-D---ARNILCEAVEKHHASILVVGSHGYG 129 (176)
Q Consensus 95 ~v~~~v~------~G-~---~~~~I~~~a~~~~~DlIV~Gs~g~~ 129 (176)
+--+++. .+ + .+..|...+++.++|+|++|....+
T Consensus 84 D~vi~v~~d~~~~~~~~~~~~A~~La~~i~~~~~dlVl~G~~s~d 128 (255)
T 1efv_B 84 DRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQAID 128 (255)
T ss_dssp SEEEEEECCHHHHTTCCHHHHHHHHHHHHHHHTCSEEEEESCCTT
T ss_pred CEEEEEecChhhcccCCHHHHHHHHHHHHHhcCCCEEEEeCcccC
Confidence 1222232 12 2 3567888888889999999998864
No 48
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=70.61 E-value=44 Score=27.62 Aligned_cols=37 Identities=14% Similarity=0.097 Sum_probs=29.5
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecC
Q 030516 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPS 50 (176)
Q Consensus 5 ~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~ 50 (176)
..++|+|++++.-+|..++.|+.+. |.+|+.+|+-..
T Consensus 9 ~~~KVvVA~SGGlDSSvll~~L~e~---------G~eViavtvd~G 45 (455)
T 1k92_A 9 VGQRIGIAFSGGLDTSAALLWMRQK---------GAVPYAYTANLG 45 (455)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHT---------TCEEEEEEEECC
T ss_pred CCCeEEEEEcChHHHHHHHHHHHHc---------CCEEEEEEEEcC
Confidence 4579999999999999999888542 458989988543
No 49
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=69.87 E-value=6.3 Score=28.23 Aligned_cols=113 Identities=7% Similarity=0.073 Sum_probs=66.2
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHH
Q 030516 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEA 84 (176)
Q Consensus 5 ~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (176)
+.++|++++-++..+.++.+.+..|.+. |.+|+++-. +... ++ +..+ .++
T Consensus 4 m~k~IllgvTGs~aa~k~~~ll~~L~~~------g~~V~vv~T---~~A~---------~f---i~~~-------~l~-- 53 (175)
T 3qjg_A 4 MGENVLICLCGSVNSINISHYIIELKSK------FDEVNVIAS---TNGR---------KF---INGE-------ILK-- 53 (175)
T ss_dssp -CCEEEEEECSSGGGGGHHHHHHHHTTT------CSEEEEEEC---TGGG---------GG---SCHH-------HHH--
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHHHHC------CCEEEEEEC---cCHH---------HH---hhHH-------HHH--
Confidence 3489999999999999999988777765 678877643 1110 01 1111 111
Q ss_pred HHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcccchhcccccchh--hhheeeccccccccc
Q 030516 85 KEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKSTISCFI--WYLIFSRVELGMVNC 157 (176)
Q Consensus 85 ~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~gvs~~~--~~~~~~~~~~~~~~~ 157 (176)
. +.. + +-... . ++.-..++.++ .+|++|+.--....+.++-.|.++-. ...+-.+.|+.++++
T Consensus 54 -~-l~~-~---v~~~~-~-~~~~~hi~l~~--~aD~~vVaPaTanTlakiA~GiaDnLlt~~~la~~~pvvl~Pa 118 (175)
T 3qjg_A 54 -Q-FCD-N---YYDEF-E-DPFLNHVDIAN--KHDKIIILPATSNTINKIANGICDNLLLTICHTAFEKLSIFPN 118 (175)
T ss_dssp -H-HCS-C---EECTT-T-CTTCCHHHHHH--TCSEEEEEEECHHHHHHHHTTCCCSHHHHHHHTCGGGEEEEEC
T ss_pred -H-hcC-C---EEecC-C-CCccccccccc--hhCEEEEeeCCHHHHHHHHccccCCHHHHHHHHcCCCEEEEec
Confidence 1 111 1 11111 1 12223556666 89999999988888888877766521 122334777776653
No 50
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=68.39 E-value=4.2 Score=26.22 Aligned_cols=52 Identities=17% Similarity=0.045 Sum_probs=30.8
Q ss_pred hHHHHHHHHHhcCCcEEEEeccCC--cccchhcccccchhhhheeecccccccc
Q 030516 105 ARNILCEAVEKHHASILVVGSHGY--GAIKRYKSTISCFIWYLIFSRVELGMVN 156 (176)
Q Consensus 105 ~~~~I~~~a~~~~~DlIV~Gs~g~--~~l~~~l~gvs~~~~~~~~~~~~~~~~~ 156 (176)
..+.|.+++++++++.||+|-.-. +.....-.-+.+|+..+....+||.+++
T Consensus 39 ~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~~lpV~~~D 92 (98)
T 1iv0_A 39 DVEALLDFVRREGLGKLVVGLPLRTDLKESAQAGKVLPLVEALRARGVEVELWD 92 (98)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSSTTHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEeeccCCCCCcCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence 578899999999999999993311 1111111124456666544345665443
No 51
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=67.66 E-value=47 Score=26.81 Aligned_cols=35 Identities=17% Similarity=0.128 Sum_probs=27.8
Q ss_pred CCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEec
Q 030516 6 TQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (176)
Q Consensus 6 ~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~ 49 (176)
..+++|++++.-+|..++..+.+ + |.+++.+|+-.
T Consensus 187 ~~kvlvalSGGvDS~vll~ll~~---~------G~~v~av~v~~ 221 (413)
T 2c5s_A 187 GGKVMVLLSGGIDSPVAAYLTMK---R------GVSVEAVHFHS 221 (413)
T ss_dssp TEEEEEECCSSSHHHHHHHHHHH---B------TEEEEEEEEEC
T ss_pred CCeEEEEeCCCChHHHHHHHHHH---c------CCcEEEEEEeC
Confidence 46899999999999888877654 3 56899998853
No 52
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=67.17 E-value=28 Score=27.11 Aligned_cols=39 Identities=8% Similarity=0.152 Sum_probs=30.9
Q ss_pred CEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCC
Q 030516 7 QTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSP 51 (176)
Q Consensus 7 ~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~ 51 (176)
-+|||++.........++.+..+... .+-++++++.+..
T Consensus 21 P~iLV~sg~p~~~~~li~la~~lt~~------~G~ltv~~i~p~~ 59 (294)
T 3g40_A 21 ANLLVPVEDPRELMGTFDFLRDITYP------KGSVKLLGLAGNT 59 (294)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHTT------TCEEEEEECC---
T ss_pred CcEEEecCCchhhhhHHHHHHHhccC------ceeEEEEEEccCC
Confidence 47999998777889999999999998 4589999986443
No 53
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=64.51 E-value=13 Score=26.71 Aligned_cols=57 Identities=12% Similarity=0.225 Sum_probs=39.3
Q ss_pred HHHHHHHHhhhcCCcceEEEEEcCC-hHHHH---HHHHHhcCCcEEEEeccCCcccchhccc
Q 030516 80 VVEEAKEICSSKSVHDFVVEVVEGD-ARNIL---CEAVEKHHASILVVGSHGYGAIKRYKST 137 (176)
Q Consensus 80 ~l~~~~~~~~~~~~~~v~~~v~~G~-~~~~I---~~~a~~~~~DlIV~Gs~g~~~l~~~l~g 137 (176)
.++++...++.++. +++..+..-. ..+.+ .+.+++.+++.||.++-+...+.+++-|
T Consensus 22 v~~~a~~~L~~~gi-~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~ 82 (174)
T 3lp6_A 22 VMADAAAALAEFDI-PAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLPGMVAA 82 (174)
T ss_dssp HHHHHHHHHHHTTC-CEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHHHHHHH
T ss_pred HHHHHHHHHHHcCC-CEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhHHHHHh
Confidence 44555666667775 5888877632 33444 4445667999999999998888887644
No 54
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=63.71 E-value=50 Score=27.42 Aligned_cols=93 Identities=11% Similarity=-0.002 Sum_probs=57.2
Q ss_pred EEEEe--cCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHH
Q 030516 9 MVVGI--DDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKE 86 (176)
Q Consensus 9 ILVav--D~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 86 (176)
+|+=+ |..-....||..|++. . ++..|.+.++..... . . .....+.-..+.|..+.+
T Consensus 14 ~l~WfrrDLRl~DN~aL~~A~~~--~--------~v~pvfi~dp~~~~~-~-~---------~~~~~~~fl~~sL~~L~~ 72 (509)
T 1u3d_A 14 SIVWFRRDLRVEDNPALAAAVRA--G--------PVIALFVWAPEEEGH-Y-H---------PGRVSRWWLKNSLAQLDS 72 (509)
T ss_dssp EEEEESSCCCSTTCHHHHHHHHH--S--------CEEEEEEECGGGGTT-C-C---------CCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCccchhHHHHHHHhC--C--------CEEEEEEECchhccc-C-C---------cchHHHHHHHHHHHHHHH
Confidence 44444 6666666777777653 2 456777776543210 0 0 011122245566777777
Q ss_pred HhhhcCCcceEEEEEc-CChHHHHHHHHHhcCCcEEEEec
Q 030516 87 ICSSKSVHDFVVEVVE-GDARNILCEAVEKHHASILVVGS 125 (176)
Q Consensus 87 ~~~~~~~~~v~~~v~~-G~~~~~I~~~a~~~~~DlIV~Gs 125 (176)
.+.+.+. + ..+.. |++.+.|.+.+++.+++.|+...
T Consensus 73 ~L~~~G~-~--L~v~~~g~~~~~l~~l~~~~~~~~V~~~~ 109 (509)
T 1u3d_A 73 SLRSLGT-C--LITKRSTDSVASLLDVVKSTGASQIFFNH 109 (509)
T ss_dssp HHHHTTC-C--EEEEECSCHHHHHHHHHHHHTCCEEEEEC
T ss_pred HHHHCCC-e--EEEEeCCCHHHHHHHHHHHcCCCEEEEec
Confidence 7777764 2 34444 78999999999999999998753
No 55
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=63.59 E-value=7.5 Score=28.29 Aligned_cols=36 Identities=17% Similarity=0.084 Sum_probs=29.9
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEE
Q 030516 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVH 46 (176)
Q Consensus 5 ~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvh 46 (176)
..++|++++-++..+.++.+.+..|.+. |.+|+++-
T Consensus 7 ~~k~IllgvTGs~aa~k~~~l~~~L~~~------g~~V~vv~ 42 (194)
T 1p3y_1 7 KDKKLLIGICGSISSVGISSYLLYFKSF------FKEIRVVM 42 (194)
T ss_dssp GGCEEEEEECSCGGGGGTHHHHHHHTTT------SSEEEEEE
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHC------CCEEEEEE
Confidence 4589999999999999999888877654 67888774
No 56
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=62.80 E-value=48 Score=25.13 Aligned_cols=83 Identities=20% Similarity=0.292 Sum_probs=50.2
Q ss_pred EecCCHhHHHHHHHHHHHhcccCCCCCCc--EEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHHHhh
Q 030516 12 GIDDSEQSTYALQWTLDHFFANSTVNPPF--KLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICS 89 (176)
Q Consensus 12 avD~s~~s~~al~~a~~la~~~~~~~~~a--~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 89 (176)
+.-.++.+..|++.|.++..+. +. +|+++.+-++. .++.++++.+
T Consensus 32 ~~~lnp~d~~ale~A~~Lke~~-----g~~~~V~av~~G~~~-------------------------~~~~lr~ala--- 78 (264)
T 1o97_C 32 MYDLNEWDDFSLEEAMKIKESS-----DTDVEVVVVSVGPDR-------------------------VDESLRKCLA--- 78 (264)
T ss_dssp EEEECHHHHHHHHHHHHHHHHC-----SSCCEEEEEEESCGG-------------------------GHHHHHHHHH---
T ss_pred CCccCHHHHHHHHHHHHHHHhc-----CCCceEEEEEeCchh-------------------------HHHHHHHHHh---
Confidence 3345678889999999998762 44 88888774311 1122332211
Q ss_pred hcCCcceEEEEEc----C-C---hHHHHHHHHHhcCCcEEEEeccCCc
Q 030516 90 SKSVHDFVVEVVE----G-D---ARNILCEAVEKHHASILVVGSHGYG 129 (176)
Q Consensus 90 ~~~~~~v~~~v~~----G-~---~~~~I~~~a~~~~~DlIV~Gs~g~~ 129 (176)
.|. +--+++.. + + .+..|...+++.++|+|++|....+
T Consensus 79 -~Ga-D~vi~v~d~~~~~~~~~~~a~~La~~i~~~~~dlVl~G~~s~d 124 (264)
T 1o97_C 79 -KGA-DRAVRVWDDAAEGSDAIVVGRILTEVIKKEAPDMVFAGVQSSD 124 (264)
T ss_dssp -TTC-SEEEEECCGGGTTCCHHHHHHHHHHHHHHHCCSEEEEESCCTT
T ss_pred -cCC-CEEEEEcCcccccCCHHHHHHHHHHHHHhcCCCEEEEcCCccC
Confidence 232 12222221 1 2 3567888888889999999988854
No 57
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=62.55 E-value=40 Score=24.20 Aligned_cols=33 Identities=9% Similarity=0.043 Sum_probs=25.7
Q ss_pred CEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEe
Q 030516 7 QTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHAR 48 (176)
Q Consensus 7 ~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~ 48 (176)
.+|+|++++..+|..++..+.++. . ++.++|+-
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~-~--------~v~~v~vd 77 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIR-P--------DIPVILTD 77 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS-T--------TCEEEEEE
T ss_pred CCEEEEecCCHHHHHHHHHHHHhC-C--------CCeEEEee
Confidence 489999999999999888776653 2 46677774
No 58
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=62.44 E-value=15 Score=29.92 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=32.7
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEe
Q 030516 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHAR 48 (176)
Q Consensus 5 ~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~ 48 (176)
...+|+|++++..+|..++..+..+.... .+.+++++|+-
T Consensus 12 ~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~----~g~~v~avhvd 51 (433)
T 1ni5_A 12 TSRQILVAFSGGLDSTVLLHQLVQWRTEN----PGVALRAIHVH 51 (433)
T ss_dssp TCSEEEEECCSBHHHHHHHHHHHHHHTTS----TTCEEEEEEEC
T ss_pred CCCEEEEEEcchHHHHHHHHHHHHHHHhc----CCCeEEEEEEE
Confidence 35789999999999999999888877641 15699999994
No 59
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=62.08 E-value=14 Score=26.68 Aligned_cols=34 Identities=15% Similarity=0.125 Sum_probs=29.1
Q ss_pred CEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEE
Q 030516 7 QTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVH 46 (176)
Q Consensus 7 ~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvh 46 (176)
++|++++-++..+.++.+.+..|.+. |++|+++-
T Consensus 2 k~IllgvTGs~aa~k~~~l~~~L~~~------g~~V~vv~ 35 (189)
T 2ejb_A 2 QKIALCITGASGVIYGIKLLQVLEEL------DFSVDLVI 35 (189)
T ss_dssp CEEEEEECSSTTHHHHHHHHHHHHHT------TCEEEEEE
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHC------CCEEEEEE
Confidence 79999999999999999988888765 67888774
No 60
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=61.25 E-value=63 Score=26.06 Aligned_cols=35 Identities=11% Similarity=0.310 Sum_probs=27.6
Q ss_pred CEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEec
Q 030516 7 QTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (176)
Q Consensus 7 ~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~ 49 (176)
+++++++++.-+|..++.++.+.. +.+|+.+|+-.
T Consensus 1 ~kVvva~SGG~DSsvll~ll~~~~--------g~~V~av~vd~ 35 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWLKETY--------RAEVIAFTADI 35 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHH--------TCEEEEEEEES
T ss_pred CcEEEEEeChHHHHHHHHHHHHhh--------CCcEEEEEEeC
Confidence 479999999999999998886542 23788888854
No 61
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=60.85 E-value=20 Score=29.39 Aligned_cols=88 Identities=13% Similarity=0.129 Sum_probs=54.7
Q ss_pred cCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHHHhhhcCC
Q 030516 14 DDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSV 93 (176)
Q Consensus 14 D~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 93 (176)
|..-....||..|++ . +.+|..|++.++...... .........-..+.+..+.+.+.+.|.
T Consensus 10 DLRl~DN~aL~~A~~---~------~~~v~~vfi~dp~~~~~~----------~~~~~~r~~Fl~~sL~~L~~~L~~~G~ 70 (440)
T 2e0i_A 10 DLRLEDNTGLNYALS---E------CDRVIPVFIADPRQLINN----------PYKSEFAVSFMINSLLELDDELRKKGS 70 (440)
T ss_dssp CCCSSSCHHHHHHHH---H------SSEEEEEEEECHHHHSSC----------TTCCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCccchhHHHHHHHh---c------CCCEEEEEEeChhhhccC----------CcCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 444445567777665 2 338899999875322100 001123334556667777777777663
Q ss_pred cceEEEEEcCChHHHHHHHHHhcCCcEEEEec
Q 030516 94 HDFVVEVVEGDARNILCEAVEKHHASILVVGS 125 (176)
Q Consensus 94 ~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs 125 (176)
+ ..+..|++.+.|.+.++ +++.|+.-.
T Consensus 71 -~--L~v~~g~~~~~l~~l~~--~~~~v~~~~ 97 (440)
T 2e0i_A 71 -R--LNVFFGEAEKVVSRFFN--KVDAIYVNE 97 (440)
T ss_dssp -C--CEEEESCHHHHHHHHCT--TCSEEEEEC
T ss_pred -e--EEEEECCHHHHHHHHHc--CCCEEEEec
Confidence 2 44567999999999999 999988743
No 62
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=59.18 E-value=38 Score=23.81 Aligned_cols=57 Identities=4% Similarity=0.114 Sum_probs=39.6
Q ss_pred HHHHHHHHhhhcCCcceEEEEEcCC-hHHHHHHHHH---hc-CCcEEEEeccCCcccchhccc
Q 030516 80 VVEEAKEICSSKSVHDFVVEVVEGD-ARNILCEAVE---KH-HASILVVGSHGYGAIKRYKST 137 (176)
Q Consensus 80 ~l~~~~~~~~~~~~~~v~~~v~~G~-~~~~I~~~a~---~~-~~DlIV~Gs~g~~~l~~~l~g 137 (176)
.++++...++.++. +++..+..-. ..+.+.++++ +. +++.||.+.-+...+..++-|
T Consensus 17 v~~~a~~~l~~~gi-~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~LpgvvA~ 78 (159)
T 3rg8_A 17 HAEKIASELKTFGI-EYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALSGFVDG 78 (159)
T ss_dssp HHHHHHHHHHHTTC-EEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHHHHHHH
T ss_pred HHHHHHHHHHHcCC-CEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhHHHHHh
Confidence 45556666677775 5888877633 5555656654 33 699999999999988887754
No 63
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=59.18 E-value=12 Score=27.43 Aligned_cols=37 Identities=11% Similarity=-0.087 Sum_probs=30.1
Q ss_pred CCCCEEEEEecCCHhHH-HHHHHHHHHhcccCCCCCCcEEEEEE
Q 030516 4 AETQTMVVGIDDSEQST-YALQWTLDHFFANSTVNPPFKLVIVH 46 (176)
Q Consensus 4 ~~~~~ILVavD~s~~s~-~al~~a~~la~~~~~~~~~a~v~lvh 46 (176)
...++|++++-++..+- ++++.+..|-+. |++|+++-
T Consensus 5 l~~k~I~lgiTGs~aa~~k~~~ll~~L~~~------g~eV~vv~ 42 (201)
T 3lqk_A 5 FAGKHVGFGLTGSHCTYHEVLPQMERLVEL------GAKVTPFV 42 (201)
T ss_dssp CTTCEEEEECCSCGGGGGGTHHHHHHHHHT------TCEEEEEC
T ss_pred cCCCEEEEEEEChHHHHHHHHHHHHHHhhC------CCEEEEEE
Confidence 34689999999998888 899998888776 67877764
No 64
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=57.51 E-value=13 Score=28.93 Aligned_cols=82 Identities=12% Similarity=0.054 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHHHhhhcCCcceEE
Q 030516 19 STYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDFVV 98 (176)
Q Consensus 19 s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~ 98 (176)
..-++-.|..|...+ ++++.++.|+++ ++..+.+++.++++.+.+.- +. ...
T Consensus 178 g~LmlllAylL~~nW-----~A~I~L~~vV~d--------------------e~a~~~a~~~l~~Lv~~~Ri-~a-~~~- 229 (294)
T 3g40_A 178 MDLALLIAYKLKSNW-----KASLSFMTFAPT--------------------AIQAQAAENFLQSLAELARI-PN-VKM- 229 (294)
T ss_dssp THHHHHHHHHHHHHH-----TCEEEEEEECSS--------------------HHHHHHHHHHHHHHHHHHTC-CS-CEE-
T ss_pred hhHHHHHHHHHhhCc-----CCeEEEEEecCC--------------------HHHHHHHHHHHHHHHHHhcC-Cc-eEE-
Confidence 344555555555554 679999998663 34557777888887776633 32 232
Q ss_pred EEEcCChHHHHHHHHHhcCCcEEEEeccCCcccc
Q 030516 99 EVVEGDARNILCEAVEKHHASILVVGSHGYGAIK 132 (176)
Q Consensus 99 ~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~ 132 (176)
.+. .+...|+..+. ++|++++|-.....+.
T Consensus 230 vv~--~~F~~il~~s~--~ADL~flGl~~~~df~ 259 (294)
T 3g40_A 230 QVL--RENPIKSSKLP--FASLHIFSLDPNPDLD 259 (294)
T ss_dssp EEE--SSCTTTSSSCC--CCSEEEEECCSSCCHH
T ss_pred Eec--CchHHHHhhCc--CCCEEEEcCCCCCcHH
Confidence 233 44555555554 8999999998876554
No 65
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=56.04 E-value=47 Score=27.28 Aligned_cols=25 Identities=12% Similarity=0.129 Sum_probs=19.2
Q ss_pred HHHHHHHhcCCcEEEEeccCCcccc
Q 030516 108 ILCEAVEKHHASILVVGSHGYGAIK 132 (176)
Q Consensus 108 ~I~~~a~~~~~DlIV~Gs~g~~~l~ 132 (176)
..++.++++++|+|++-+.|+....
T Consensus 173 ~al~~a~~~~~DvVIIDTaGrl~~d 197 (443)
T 3dm5_A 173 EGVDYFKSKGVDIIIVDTAGRHKED 197 (443)
T ss_dssp HHHHHHHHTTCSEEEEECCCCSSCC
T ss_pred HHHHHHHhCCCCEEEEECCCcccch
Confidence 4466777788999999999876544
No 66
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=55.90 E-value=36 Score=24.30 Aligned_cols=57 Identities=19% Similarity=0.307 Sum_probs=40.5
Q ss_pred HHHHHHHHhhhcCCcceEEEEEcCC-hHHHHHHHHH---hcCCcEEEEeccCCcccchhccc
Q 030516 80 VVEEAKEICSSKSVHDFVVEVVEGD-ARNILCEAVE---KHHASILVVGSHGYGAIKRYKST 137 (176)
Q Consensus 80 ~l~~~~~~~~~~~~~~v~~~v~~G~-~~~~I~~~a~---~~~~DlIV~Gs~g~~~l~~~l~g 137 (176)
.++++...+++++. +++..+..-. ..+.+.++++ +.++++||.+.-+...+..++-|
T Consensus 27 v~~~a~~~L~~~Gi-~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~ 87 (174)
T 3kuu_A 27 TMQFAADVLTTLNV-PFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPGMLAA 87 (174)
T ss_dssp HHHHHHHHHHHTTC-CEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHHHHHH
T ss_pred HHHHHHHHHHHcCC-CEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHHHh
Confidence 44555666667775 5888887643 5556666654 46899999999999988888754
No 67
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=55.82 E-value=42 Score=23.56 Aligned_cols=57 Identities=18% Similarity=0.234 Sum_probs=42.9
Q ss_pred HHHHHHHHhhhcCCcceEEEEEcC-ChHHHHHHHHHhcCCcEEEEeccCCcccchhccc
Q 030516 80 VVEEAKEICSSKSVHDFVVEVVEG-DARNILCEAVEKHHASILVVGSHGYGAIKRYKST 137 (176)
Q Consensus 80 ~l~~~~~~~~~~~~~~v~~~v~~G-~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~g 137 (176)
.++++...++.++. +++..+..- ...+.+.+++++...+.+|.+.-+...+.+++-|
T Consensus 14 v~~~a~~~l~~~gi-~~dv~V~saHR~p~~~~~~~~~a~~~ViIa~AG~aa~Lpgvva~ 71 (157)
T 2ywx_A 14 IAEKAVNILKEFGV-EFEVRVASAHRTPELVEEIVKNSKADVFIAIAGLAAHLPGVVAS 71 (157)
T ss_dssp HHHHHHHHHHHTTC-CEEEEECCTTTCHHHHHHHHHHCCCSEEEEEEESSCCHHHHHHT
T ss_pred HHHHHHHHHHHcCC-CeEEEEEcccCCHHHHHHHHHhcCCCEEEEEcCchhhhHHHHHh
Confidence 44555666667775 588888764 4677788888876669999999999988888754
No 68
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=55.10 E-value=49 Score=26.81 Aligned_cols=86 Identities=15% Similarity=0.025 Sum_probs=54.9
Q ss_pred cCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHHHhhhcCC
Q 030516 14 DDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSV 93 (176)
Q Consensus 14 D~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 93 (176)
|..-....||..|.+ . + +|..|.+.++.... . ......-..+.+..+.+.+.+.+.
T Consensus 11 DlRl~Dn~aL~~A~~---~------~-~v~~vfi~d~~~~~-------------~-~~~r~~fl~~sL~~l~~~L~~~g~ 66 (420)
T 2j07_A 11 DLRLHDHPALLEALA---R------G-PVVGLVVLDPNNLK-------------T-TPRRRAWFLENVRALREAYRARGG 66 (420)
T ss_dssp CCCSTTCHHHHHHHT---T------S-CEEEEEEECHHHHS-------------S-CHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCccccHHHHHHHh---C------C-CEEEEEEECCcccc-------------C-CHHHHHHHHHHHHHHHHHHHHCCC
Confidence 444455566665532 2 3 67788887643211 0 122334445666667777777663
Q ss_pred cceEEEEEcCChHHHHHHHHHhcCCcEEEEecc
Q 030516 94 HDFVVEVVEGDARNILCEAVEKHHASILVVGSH 126 (176)
Q Consensus 94 ~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~ 126 (176)
...+..|++.+.|.+.+++.+++.|+.-..
T Consensus 67 ---~l~~~~g~~~~~l~~l~~~~~~~~v~~~~~ 96 (420)
T 2j07_A 67 ---ALWVLEGLPWEKVPEAARRLKAKAVYALTS 96 (420)
T ss_dssp ---CEEEEESCHHHHHHHHHHHTTCSEEEEECC
T ss_pred ---eEEEEeCCHHHHHHHHHHHcCCCEEEEecc
Confidence 245567999999999999999999988443
No 69
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=55.07 E-value=33 Score=24.39 Aligned_cols=57 Identities=9% Similarity=0.104 Sum_probs=39.7
Q ss_pred HHHHHHHHhhhcCCcceEEEEEcCC-hHHHHHHH---HHhcCCcEEEEeccCCcccchhccc
Q 030516 80 VVEEAKEICSSKSVHDFVVEVVEGD-ARNILCEA---VEKHHASILVVGSHGYGAIKRYKST 137 (176)
Q Consensus 80 ~l~~~~~~~~~~~~~~v~~~v~~G~-~~~~I~~~---a~~~~~DlIV~Gs~g~~~l~~~l~g 137 (176)
.++++...++.++. +++..+..-. ..+.+.++ +++.+++.||.+.-+...+.+++-|
T Consensus 21 v~~~a~~~l~~~gi-~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~ 81 (169)
T 3trh_A 21 TMETAFTELKSLGI-PFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHLAGTIAA 81 (169)
T ss_dssp HHHHHHHHHHHTTC-CEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHHHHHHH
T ss_pred HHHHHHHHHHHcCC-CEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHHHh
Confidence 44555666667775 5888887633 44445555 5567899999999999988888754
No 70
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=52.68 E-value=49 Score=23.51 Aligned_cols=57 Identities=14% Similarity=0.264 Sum_probs=40.3
Q ss_pred HHHHHHHHhhhcCCcceEEEEEcC-ChHHHHHHHHH---hcCCcEEEEeccCCcccchhccc
Q 030516 80 VVEEAKEICSSKSVHDFVVEVVEG-DARNILCEAVE---KHHASILVVGSHGYGAIKRYKST 137 (176)
Q Consensus 80 ~l~~~~~~~~~~~~~~v~~~v~~G-~~~~~I~~~a~---~~~~DlIV~Gs~g~~~l~~~l~g 137 (176)
.++++...+++++. +++..+..- ...+.+.++++ +.+++.||.+.-+...+..++-|
T Consensus 26 v~~~a~~~L~~~Gi-~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~ 86 (170)
T 1xmp_A 26 TMKYACDILDELNI-PYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAA 86 (170)
T ss_dssp HHHHHHHHHHHTTC-CEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHT
T ss_pred HHHHHHHHHHHcCC-CEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHHHh
Confidence 44555566667775 588888763 35555666665 45689999999999999888754
No 71
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=51.62 E-value=62 Score=22.96 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=27.1
Q ss_pred CCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEec
Q 030516 6 TQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (176)
Q Consensus 6 ~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~ 49 (176)
.++++|++++.-+|..++..+.+. +.+++.+|+..
T Consensus 3 ~~~v~v~lSGG~DS~~ll~ll~~~---------~~~v~~~~~~~ 37 (219)
T 3bl5_A 3 KEKAIVVFSGGQDSTTCLLWALKE---------FEEVETVTFHY 37 (219)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHH---------CSEEEEEEEES
T ss_pred CCCEEEEccCcHHHHHHHHHHHHc---------CCceEEEEEeC
Confidence 468999999999999888776543 23788888854
No 72
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=51.37 E-value=17 Score=26.72 Aligned_cols=128 Identities=7% Similarity=-0.055 Sum_probs=65.7
Q ss_pred CCCCEEEEEecCCHhHHH-HHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHH
Q 030516 4 AETQTMVVGIDDSEQSTY-ALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVE 82 (176)
Q Consensus 4 ~~~~~ILVavD~s~~s~~-al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (176)
...++|++++-+|-.+-+ +++.+..|-+. |++|+++-.-.-... ...+ ...+++..
T Consensus 3 l~~k~IllgiTGsiaayk~~~~ll~~L~~~------g~eV~vv~T~~A~~v------------l~~f-----~~~~~~~~ 59 (207)
T 3mcu_A 3 LKGKRIGFGFTGSHCTYEEVMPHLEKLIAE------GAEVRPVVSYTVQST------------NTRF-----GEGAEWIK 59 (207)
T ss_dssp CTTCEEEEEECSCGGGGTTSHHHHHHHHHT------TCEEEEEECC-----------------------------CHHHH
T ss_pred CCCCEEEEEEEChHHHHHHHHHHHHHHHhC------CCEEEEEEehHHHHH------------HHHh-----cCchhHHH
Confidence 456899999999977665 88888777766 778887743111100 0000 00001111
Q ss_pred HHHHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcccchhcccccchh-h----hheeeccccccccc
Q 030516 83 EAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKSTISCFI-W----YLIFSRVELGMVNC 157 (176)
Q Consensus 83 ~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~gvs~~~-~----~~~~~~~~~~~~~~ 157 (176)
.+.. +...+.. .+..+ .....-...+|++|+.--....+.++-.|.++-. . ..+-.+.||.+++.
T Consensus 60 ~l~~-ltg~~v~--------~~~~~-~~hi~ls~~aD~mvIaPaTanTlAKiA~GiaDnLlt~aa~~~L~~~~plvlaPa 129 (207)
T 3mcu_A 60 KIEE-ITGFKAI--------NSIVG-AEPLGPKIPLDCMVIAPLTGNSMSKFANAMTDSPVLMAAKATLRNGKPVVLAVS 129 (207)
T ss_dssp HHHH-HSSSCCB--------CSHHH-HGGGTTTSCCSEEEEEEECHHHHHHHHTTCCCSHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHH-HhCCceE--------eecCc-ccccccchhcCEEEEecCCHHHHHHHHccccCcHHHHHHHHHHhcCCCEEEEEC
Confidence 1211 1111210 11111 0011113478888888888777777776655422 1 23345778877776
Q ss_pred cCcccce
Q 030516 158 FGYYSYL 164 (176)
Q Consensus 158 ~~~~~~~ 164 (176)
.-+..|.
T Consensus 130 mn~~m~~ 136 (207)
T 3mcu_A 130 TNDALGL 136 (207)
T ss_dssp ETTTTTT
T ss_pred CChhHHH
Confidence 6655553
No 73
>1xw8_A UPF0271 protein YBGL; NESG, northeast structural genomics consortium, structural genomics, protein structure initiative, PSI, X-RAY; 2.00A {Escherichia coli} SCOP: c.6.2.5
Probab=51.06 E-value=78 Score=23.98 Aligned_cols=104 Identities=13% Similarity=0.122 Sum_probs=65.1
Q ss_pred EEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEe-cCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHHHh
Q 030516 10 VVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHAR-PSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEIC 88 (176)
Q Consensus 10 LVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 88 (176)
-|+.-+.......++...++|++. |..| .-|+- ++.... +.. ..+--.++.......++-.+...+
T Consensus 27 NIACGfHAGDp~~M~~Tv~lA~~~-----gV~I-GAHPgypDl~GF------GRR-~m~~s~~el~~~v~YQiGAL~a~a 93 (252)
T 1xw8_A 27 NIACGFHAGDAQIMQACVREAIKN-----GVAI-GAHPSFPDRENF------GRS-AMQLPPETVYAQTLYQIGALATIA 93 (252)
T ss_dssp EEECSSSSCCHHHHHHHHHHHHHH-----TCEE-EEECCCC-------------C-CCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcccCCCHHHHHHHHHHHHHc-----CCee-ecCCCCCcccCC------CCC-CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 345555556667888899999984 3333 44543 222211 111 112224566677777788888888
Q ss_pred hhcCCcceEEEEEc-C----------ChHHHHHHHHHhcCCcEEEEeccCC
Q 030516 89 SSKSVHDFVVEVVE-G----------DARNILCEAVEKHHASILVVGSHGY 128 (176)
Q Consensus 89 ~~~~~~~v~~~v~~-G----------~~~~~I~~~a~~~~~DlIV~Gs~g~ 128 (176)
...+. ++.. |+. | ..+++|++.++..+++|+++|..+.
T Consensus 94 ~~~G~-~l~h-VKPHGALYN~~a~d~~~A~av~~av~~~d~~L~l~~l~gs 142 (252)
T 1xw8_A 94 RAQGG-VMRH-VKPHGMLYNQAAKEAQLADAIARAVYACDPALILVGLAGS 142 (252)
T ss_dssp HHTTC-CEEE-ECCCHHHHHHHTTCHHHHHHHHHHHHHHCTTCEEEEETTS
T ss_pred HHcCC-EeEE-eCcCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecCCh
Confidence 77764 3544 443 3 3689999999999999999997664
No 74
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=50.77 E-value=27 Score=25.10 Aligned_cols=37 Identities=5% Similarity=-0.012 Sum_probs=27.0
Q ss_pred CCCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEec
Q 030516 4 AETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (176)
Q Consensus 4 ~~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~ 49 (176)
|.+++++|++.+..+|..++..+.+ . +.++..+|+-.
T Consensus 4 m~~~kv~v~~SGG~DS~~ll~ll~~---~------g~~v~~~~v~~ 40 (203)
T 3k32_A 4 MKLMDVHVLFSGGKDSSLSAVILKK---L------GYNPHLITINF 40 (203)
T ss_dssp --CEEEEEECCCSHHHHHHHHHHHH---T------TEEEEEEEEEC
T ss_pred ccCCeEEEEEECcHHHHHHHHHHHH---c------CCCeEEEEEeC
Confidence 4567999999999999888765432 2 45888888854
No 75
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=50.16 E-value=18 Score=26.52 Aligned_cols=37 Identities=11% Similarity=0.094 Sum_probs=28.9
Q ss_pred CCCCEEEEEecCCHhHHHHHHHHHHHhc-ccCCCCCCcEEEEEE
Q 030516 4 AETQTMVVGIDDSEQSTYALQWTLDHFF-ANSTVNPPFKLVIVH 46 (176)
Q Consensus 4 ~~~~~ILVavD~s~~s~~al~~a~~la~-~~~~~~~~a~v~lvh 46 (176)
...++|++++-++-.+.++.+.+..|.+ . |++|+++-
T Consensus 17 l~~k~IllgvTGsiaa~k~~~lv~~L~~~~------g~~V~vv~ 54 (206)
T 1qzu_A 17 ERKFHVLVGVTGSVAALKLPLLVSKLLDIP------GLEVAVVT 54 (206)
T ss_dssp CSSEEEEEEECSSGGGGTHHHHHHHHC---------CEEEEEEE
T ss_pred cCCCEEEEEEeChHHHHHHHHHHHHHhccc------CCEEEEEE
Confidence 3457999999999999999888888866 4 67777774
No 76
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=49.90 E-value=50 Score=23.31 Aligned_cols=57 Identities=11% Similarity=0.275 Sum_probs=40.1
Q ss_pred HHHHHHHHhhhcCCcceEEEEEcC-ChHHHHHHHHH---hcCCcEEEEeccCCcccchhccc
Q 030516 80 VVEEAKEICSSKSVHDFVVEVVEG-DARNILCEAVE---KHHASILVVGSHGYGAIKRYKST 137 (176)
Q Consensus 80 ~l~~~~~~~~~~~~~~v~~~v~~G-~~~~~I~~~a~---~~~~DlIV~Gs~g~~~l~~~l~g 137 (176)
.++++...++.++. +++..+..- ...+.+.++++ +.+++.||.+.-+...+..++-|
T Consensus 18 v~~~a~~~l~~~gi-~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~ 78 (163)
T 3ors_A 18 IMQESCNMLDYFEI-PYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPGMVAS 78 (163)
T ss_dssp HHHHHHHHHHHTTC-CEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHH
T ss_pred HHHHHHHHHHHcCC-CEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHHHh
Confidence 45555666677775 588888763 35555555554 46799999999999988888754
No 77
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=49.77 E-value=74 Score=23.32 Aligned_cols=87 Identities=10% Similarity=0.065 Sum_probs=50.7
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHH
Q 030516 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEA 84 (176)
Q Consensus 5 ~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (176)
...+|.|-+.++.....++-.+.+.- . +++|.+| +.+.... ..
T Consensus 4 ~~~riavl~SG~Gsnl~all~~~~~~-~------~~eI~~V--is~~~~a---------------~~------------- 46 (215)
T 3tqr_A 4 EPLPIVVLISGNGTNLQAIIGAIQKG-L------AIEIRAV--ISNRADA---------------YG------------- 46 (215)
T ss_dssp CCEEEEEEESSCCHHHHHHHHHHHTT-C------SEEEEEE--EESCTTC---------------HH-------------
T ss_pred CCcEEEEEEeCCcHHHHHHHHHHHcC-C------CCEEEEE--EeCCcch---------------HH-------------
Confidence 34689999999988877776664432 2 3465555 3322211 00
Q ss_pred HHHhhhcCCcceEEEEEc--CC---hHHHHHHHHHhcCCcEEEEeccCCc
Q 030516 85 KEICSSKSVHDFVVEVVE--GD---ARNILCEAVEKHHASILVVGSHGYG 129 (176)
Q Consensus 85 ~~~~~~~~~~~v~~~v~~--G~---~~~~I~~~a~~~~~DlIV~Gs~g~~ 129 (176)
.+.+.+++.. +...-.. .+ ..+++.+..++.++|+||+..-++-
T Consensus 47 ~~~A~~~gIp-~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~~i 95 (215)
T 3tqr_A 47 LKRAQQADIP-THIIPHEEFPSRTDFESTLQKTIDHYDPKLIVLAGFMRK 95 (215)
T ss_dssp HHHHHHTTCC-EEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEESSCCSC
T ss_pred HHHHHHcCCC-EEEeCccccCchhHhHHHHHHHHHhcCCCEEEEccchhh
Confidence 1344455532 2211011 11 2467999999999999999887763
No 78
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=48.23 E-value=43 Score=23.72 Aligned_cols=57 Identities=14% Similarity=0.310 Sum_probs=40.4
Q ss_pred HHHHHHHHhhhcCCcceEEEEEcCC-hHHHHHHHHH---hcCCcEEEEeccCCcccchhccc
Q 030516 80 VVEEAKEICSSKSVHDFVVEVVEGD-ARNILCEAVE---KHHASILVVGSHGYGAIKRYKST 137 (176)
Q Consensus 80 ~l~~~~~~~~~~~~~~v~~~v~~G~-~~~~I~~~a~---~~~~DlIV~Gs~g~~~l~~~l~g 137 (176)
.++++...++.++. .++..+..-. ..+.+.++++ +.+++.||.+.-+...+.+++-|
T Consensus 20 v~~~a~~~l~~~gi-~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~ 80 (166)
T 3oow_A 20 TMKECCDILDNLGI-GYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGMVAA 80 (166)
T ss_dssp HHHHHHHHHHHTTC-EEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHHHHH
T ss_pred HHHHHHHHHHHcCC-CEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhhHHHHHh
Confidence 45555666667775 5888887643 5556666665 35789999999999988887744
No 79
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=47.45 E-value=55 Score=23.55 Aligned_cols=57 Identities=9% Similarity=0.209 Sum_probs=40.3
Q ss_pred HHHHHHHHhhhcCCcceEEEEEcC-ChHHHHHHHHH---hcCCcEEEEeccCCcccchhccc
Q 030516 80 VVEEAKEICSSKSVHDFVVEVVEG-DARNILCEAVE---KHHASILVVGSHGYGAIKRYKST 137 (176)
Q Consensus 80 ~l~~~~~~~~~~~~~~v~~~v~~G-~~~~~I~~~a~---~~~~DlIV~Gs~g~~~l~~~l~g 137 (176)
.++++...++.++. +++..+..- ...+.+.++++ +.++++||.+.-+...+.+++-|
T Consensus 36 v~~~a~~~L~~~Gi-~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~ 96 (182)
T 1u11_A 36 TMRHADALLTELEI-PHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHLPGMCAA 96 (182)
T ss_dssp HHHHHHHHHHHTTC-CEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHH
T ss_pred HHHHHHHHHHHcCC-CeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchhhhHHHHHh
Confidence 44555566667775 588888763 35556666665 45689999999999988888754
No 80
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=47.42 E-value=80 Score=23.08 Aligned_cols=87 Identities=8% Similarity=0.035 Sum_probs=51.4
Q ss_pred CCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHH
Q 030516 6 TQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAK 85 (176)
Q Consensus 6 ~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 85 (176)
+++|.|-++++..+..++-.+.+.-.- +++|.+|-. +.+.. ...
T Consensus 2 m~riavl~Sg~Gsnl~ali~~~~~~~l------~~eI~~Vis-n~~~a-----------------------------~v~ 45 (211)
T 3p9x_A 2 MKRVAIFASGSGTNAEAIIQSQKAGQL------PCEVALLIT-DKPGA-----------------------------KVV 45 (211)
T ss_dssp -CEEEEECCTTCHHHHHHHHHHHTTCC------SSEEEEEEE-SCSSS-----------------------------HHH
T ss_pred CCEEEEEEeCCchHHHHHHHHHHcCCC------CcEEEEEEE-CCCCc-----------------------------HHH
Confidence 368999999988777777666543222 457666533 21110 233
Q ss_pred HHhhhcCCcceEEEEEc--CC---hHHHHHHHHHhcCCcEEEEeccCCc
Q 030516 86 EICSSKSVHDFVVEVVE--GD---ARNILCEAVEKHHASILVVGSHGYG 129 (176)
Q Consensus 86 ~~~~~~~~~~v~~~v~~--G~---~~~~I~~~a~~~~~DlIV~Gs~g~~ 129 (176)
+.+.+++.. +...-.. .+ -.+++++..++.++|+||+..-++-
T Consensus 46 ~~A~~~gIp-~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~~I 93 (211)
T 3p9x_A 46 ERVKVHEIP-VCALDPKTYPSKEAYEIEVVQQLKEKQIDFVVLAGYMRL 93 (211)
T ss_dssp HHHHTTTCC-EEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESSCCSC
T ss_pred HHHHHcCCC-EEEeChhhcCchhhhHHHHHHHHHhcCCCEEEEeCchhh
Confidence 455555542 3221111 11 1468899999999999999887764
No 81
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=45.95 E-value=31 Score=23.14 Aligned_cols=30 Identities=13% Similarity=0.032 Sum_probs=24.7
Q ss_pred cCChHHHHHHHHHhcCCcEEEEeccCCccc
Q 030516 102 EGDARNILCEAVEKHHASILVVGSHGYGAI 131 (176)
Q Consensus 102 ~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l 131 (176)
...|.+.+++.++++++|+|.+.+......
T Consensus 39 ~~~p~e~~v~~a~~~~~d~v~lS~~~~~~~ 68 (137)
T 1ccw_A 39 VLSPQELFIKAAIETKADAILVSSLYGQGE 68 (137)
T ss_dssp EEECHHHHHHHHHHHTCSEEEEEECSSTHH
T ss_pred CCCCHHHHHHHHHhcCCCEEEEEecCcCcH
Confidence 345899999999999999999998765433
No 82
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=45.63 E-value=58 Score=22.24 Aligned_cols=46 Identities=17% Similarity=0.070 Sum_probs=25.7
Q ss_pred HHHHHHHhhhcCCcceEEEEEcCC-hHHHHHHHHHhcCCcEEEEeccCCc
Q 030516 81 VEEAKEICSSKSVHDFVVEVVEGD-ARNILCEAVEKHHASILVVGSHGYG 129 (176)
Q Consensus 81 l~~~~~~~~~~~~~~v~~~v~~G~-~~~~I~~~a~~~~~DlIV~Gs~g~~ 129 (176)
.+.+.+.+.+.+. +++..-.... ....+..... ++|.||+|+.-..
T Consensus 22 A~~ia~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~--~~d~ii~Gspty~ 68 (159)
T 3fni_A 22 AQAIINGITKTGV-GVDVVDLGAAVDLQELRELVG--RCTGLVIGMSPAA 68 (159)
T ss_dssp HHHHHHHHHHTTC-EEEEEESSSCCCHHHHHHHHH--TEEEEEEECCBTT
T ss_pred HHHHHHHHHHCCC-eEEEEECcCcCCHHHHHHHHH--hCCEEEEEcCcCC
Confidence 3333344444443 3444333333 3455555556 7999999988764
No 83
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=45.26 E-value=31 Score=24.86 Aligned_cols=28 Identities=18% Similarity=0.076 Sum_probs=23.1
Q ss_pred CChHHHHHHHHHhcCCcEEEEeccCCcc
Q 030516 103 GDARNILCEAVEKHHASILVVGSHGYGA 130 (176)
Q Consensus 103 G~~~~~I~~~a~~~~~DlIV~Gs~g~~~ 130 (176)
..|.+.+++.++++++|+|.+.......
T Consensus 125 ~vp~~~l~~~~~~~~~d~v~lS~~~~~~ 152 (210)
T 1y80_A 125 DIEPGKFVEAVKKYQPDIVGMSALLTTT 152 (210)
T ss_dssp SBCHHHHHHHHHHHCCSEEEEECCSGGG
T ss_pred CCCHHHHHHHHHHcCCCEEEEecccccc
Confidence 4489999999999999999998765433
No 84
>2x5e_A UPF0271 protein PA4511; unknown function; HET: CIT; 2.30A {Pseudomonas aeruginosa} PDB: 2xu2_A*
Probab=43.41 E-value=1e+02 Score=23.27 Aligned_cols=105 Identities=9% Similarity=0.102 Sum_probs=66.6
Q ss_pred EEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEe-cCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHHH
Q 030516 8 TMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHAR-PSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKE 86 (176)
Q Consensus 8 ~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 86 (176)
..-|+.-+.......++...++|++. |..| .-|.- ++.... +.. ..+--.++.......++-.+..
T Consensus 36 SANIACGfHAGDp~~M~~Tv~lA~~~-----gV~I-GAHPgypDl~GF------GRR-~m~~s~~el~~~v~YQiGAL~a 102 (252)
T 2x5e_A 36 QANLACGFHAGDPLTMRRAVELAVRH-----GVSI-GAHPAYPDLSGF------GRR-SLACSAEEVHAMVLYQIGALDA 102 (252)
T ss_dssp EEEEECSSSSCCHHHHHHHHHHHHHT-----TCEE-EEECCCSCTTTT------TCS-CCCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCCCHHHHHHHHHHHHHc-----CCee-ecCCCCCcccCC------CCC-CCCCCHHHHHHHHHHHHHHHHH
Confidence 34455556666678899999999983 3333 44543 322211 111 1122245666777777777888
Q ss_pred HhhhcCCcceEEEEEcC----------ChHHHHHHHHHhcCCcEEEEecc
Q 030516 87 ICSSKSVHDFVVEVVEG----------DARNILCEAVEKHHASILVVGSH 126 (176)
Q Consensus 87 ~~~~~~~~~v~~~v~~G----------~~~~~I~~~a~~~~~DlIV~Gs~ 126 (176)
.+...+. ++...--.| ..+++|++.++..+.+|+++|..
T Consensus 103 ~a~~~G~-~l~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~ 151 (252)
T 2x5e_A 103 FCRSLGT-QVAYVKPHGALYNDLVGDDELLRAVLDACAAYRKGLPLMVLA 151 (252)
T ss_dssp HHHHTTC-CCCEECCCHHHHHHHTTCHHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred HHHHcCC-EeEEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 8877763 344422233 36899999999999999999966
No 85
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=42.88 E-value=1.3e+02 Score=25.13 Aligned_cols=34 Identities=18% Similarity=0.176 Sum_probs=26.8
Q ss_pred CEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEe
Q 030516 7 QTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHAR 48 (176)
Q Consensus 7 ~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~ 48 (176)
++++|++++.-+|.-++..+.+... .+++.+|+-
T Consensus 231 ~kvlvalSGGvDSsvla~ll~~~~G--------~~v~av~vd 264 (527)
T 3tqi_A 231 EQVIVGLSGGVDSAVTATLVHKAIG--------DQLVCVLVD 264 (527)
T ss_dssp SCEEEECTTTHHHHHHHHHHHHHHG--------GGEEEEEEC
T ss_pred CeEEEEEecCcCHHHHHHHHHHHhC--------CeEEEEEec
Confidence 7899999999999888877765422 378899883
No 86
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=41.88 E-value=67 Score=23.10 Aligned_cols=57 Identities=16% Similarity=0.351 Sum_probs=39.4
Q ss_pred HHHHHHHHhhhcCCcceEEEEEcC-ChHHHHHHHHH---hcCCcEEEEeccCCcccchhccc
Q 030516 80 VVEEAKEICSSKSVHDFVVEVVEG-DARNILCEAVE---KHHASILVVGSHGYGAIKRYKST 137 (176)
Q Consensus 80 ~l~~~~~~~~~~~~~~v~~~v~~G-~~~~~I~~~a~---~~~~DlIV~Gs~g~~~l~~~l~g 137 (176)
.++++...++.++. +++..+..- ...+.+.++++ +.++++||.++-+...+.+++-|
T Consensus 28 v~~~a~~~L~~~Gi-~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~ 88 (183)
T 1o4v_A 28 VMKQAAEILEEFGI-DYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLPGMVAS 88 (183)
T ss_dssp HHHHHHHHHHHTTC-EEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHH
T ss_pred HHHHHHHHHHHcCC-CeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCcccccHHHHHh
Confidence 44555566667775 588888763 34455555554 56789999999999988887744
No 87
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=41.77 E-value=41 Score=23.30 Aligned_cols=26 Identities=8% Similarity=0.041 Sum_probs=22.7
Q ss_pred ChHHHHHHHHHhcCCcEEEEeccCCc
Q 030516 104 DARNILCEAVEKHHASILVVGSHGYG 129 (176)
Q Consensus 104 ~~~~~I~~~a~~~~~DlIV~Gs~g~~ 129 (176)
.|.+.+++.++++++|+|.+.+....
T Consensus 56 ~p~e~lv~aa~~~~~diV~lS~~~~~ 81 (161)
T 2yxb_A 56 QTPEQVAMAAVQEDVDVIGVSILNGA 81 (161)
T ss_dssp CCHHHHHHHHHHTTCSEEEEEESSSC
T ss_pred CCHHHHHHHHHhcCCCEEEEEeechh
Confidence 48999999999999999999887554
No 88
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=41.59 E-value=61 Score=21.78 Aligned_cols=40 Identities=10% Similarity=-0.048 Sum_probs=25.2
Q ss_pred CCCCCCCEEEEEecCCH----hHHHHHHHHHHHhcccCCCCCCcEEEEEEE
Q 030516 1 MATAETQTMVVGIDDSE----QSTYALQWTLDHFFANSTVNPPFKLVIVHA 47 (176)
Q Consensus 1 m~~~~~~~ILVavD~s~----~s~~al~~a~~la~~~~~~~~~a~v~lvhv 47 (176)
|++ .++++++-+..++ .+..+++.|..++.. +..+.++-.
T Consensus 1 ~~~-~Mkk~~ivv~~~P~g~~~~~~al~~a~a~~a~------~~~v~Vff~ 44 (136)
T 2hy5_B 1 MSE-VVKKFMYLNRKAPYGTIYAWEALEVVLIGAAF------DQDVCVLFL 44 (136)
T ss_dssp -----CCEEEEEECSCTTTSSHHHHHHHHHHHHGGG------CCEEEEEEC
T ss_pred Ccc-chhEEEEEEeCCCCCcHHHHHHHHHHHHHHhC------CCCEEEEEE
Confidence 543 4567888887655 557888888877766 446666543
No 89
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=41.49 E-value=1e+02 Score=22.56 Aligned_cols=87 Identities=16% Similarity=0.080 Sum_probs=51.0
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHH
Q 030516 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEA 84 (176)
Q Consensus 5 ~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (176)
...+|.|-+.++.....++-.+..- . .+++|.+| +.++... .
T Consensus 11 ~~~ri~vl~SG~gsnl~all~~~~~--~-----~~~eI~~V--is~~~a~-----------------------------~ 52 (215)
T 3da8_A 11 APARLVVLASGTGSLLRSLLDAAVG--D-----YPARVVAV--GVDRECR-----------------------------A 52 (215)
T ss_dssp SSEEEEEEESSCCHHHHHHHHHSST--T-----CSEEEEEE--EESSCCH-----------------------------H
T ss_pred CCcEEEEEEeCChHHHHHHHHHHhc--c-----CCCeEEEE--EeCCchH-----------------------------H
Confidence 4568999999998877666555421 2 24566555 3332210 1
Q ss_pred HHHhhhcCCcceEEE-EEc-CC---hHHHHHHHHHhcCCcEEEEeccCCcc
Q 030516 85 KEICSSKSVHDFVVE-VVE-GD---ARNILCEAVEKHHASILVVGSHGYGA 130 (176)
Q Consensus 85 ~~~~~~~~~~~v~~~-v~~-G~---~~~~I~~~a~~~~~DlIV~Gs~g~~~ 130 (176)
.+.+.+++.. +... ... .+ -.+++.+..++.++|++|+..-++--
T Consensus 53 ~~~A~~~gIp-~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dlivlagy~~iL 102 (215)
T 3da8_A 53 AEIAAEASVP-VFTVRLADHPSRDAWDVAITAATAAHEPDLVVSAGFMRIL 102 (215)
T ss_dssp HHHHHHTTCC-EEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEEEECCSCC
T ss_pred HHHHHHcCCC-EEEeCcccccchhhhhHHHHHHHHhhCCCEEEEcCchhhC
Confidence 3445555542 3221 111 11 14678899999999999998877643
No 90
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=41.45 E-value=1.4e+02 Score=24.28 Aligned_cols=37 Identities=14% Similarity=0.307 Sum_probs=27.4
Q ss_pred CCCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEec
Q 030516 4 AETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (176)
Q Consensus 4 ~~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~ 49 (176)
.+.++++|++++.-+|.-++.|+.+. |.+|+.+++-.
T Consensus 12 ~~~~KVVVA~SGGlDSSv~a~~Lke~---------G~eViavt~d~ 48 (421)
T 1vl2_A 12 HMKEKVVLAYSGGLDTSVILKWLCEK---------GFDVIAYVANV 48 (421)
T ss_dssp --CCEEEEECCSSHHHHHHHHHHHHT---------TCEEEEEEEES
T ss_pred cccCCEEEEeCCcHHHHHHHHHHHHC---------CCeEEEEEEEc
Confidence 35688999999999998888777432 45888888753
No 91
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=40.69 E-value=11 Score=34.62 Aligned_cols=57 Identities=5% Similarity=0.011 Sum_probs=38.4
Q ss_pred HHHHHHHHhcCCcEEEEeccCCcccchhcccccchhhhhe-----eeccccccccccCcccce
Q 030516 107 NILCEAVEKHHASILVVGSHGYGAIKRYKSTISCFIWYLI-----FSRVELGMVNCFGYYSYL 164 (176)
Q Consensus 107 ~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~gvs~~~~~~~-----~~~~~~~~~~~~~~~~~~ 164 (176)
+.+.+.++++++++|++|..++ -..+++..+.+.+...- ...+++.||+-.|-+-|+
T Consensus 568 ~~l~~li~~~~~~~IaIGn~s~-et~~l~~~l~~~i~~~~~~~~~~~~i~~~iV~e~gAsvYs 629 (1030)
T 3psf_A 568 DTLDNIIQSCQPNAIGINGPNP-KTQKFYKRLQEVLHKKQIVDSRGHTIPIIYVEDEVAIRYQ 629 (1030)
T ss_dssp HHHHHHHHHHCCSEEEECCSST-HHHHHHHHHHHHHHHTTCBCTTSCBCCEEECCCTTHHHHH
T ss_pred HHHHHHHHHcCCcEEEECCCCH-HHHHHHHHHHHHHHhhccccccCCCccEEEecchHHHHHH
Confidence 7889999999999999997433 23344322333222211 135889999999988776
No 92
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=40.65 E-value=1e+02 Score=22.40 Aligned_cols=94 Identities=12% Similarity=0.041 Sum_probs=52.3
Q ss_pred CCCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHH
Q 030516 4 AETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEE 83 (176)
Q Consensus 4 ~~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (176)
|..++|.|-+.++.....++-.+...-. .+++|.+| +.+.+... .
T Consensus 5 m~~~ri~vl~SG~gsnl~all~~~~~~~------l~~~I~~V--isn~~~a~---------------~------------ 49 (209)
T 4ds3_A 5 MKRNRVVIFISGGGSNMEALIRAAQAPG------FPAEIVAV--FSDKAEAG---------------G------------ 49 (209)
T ss_dssp -CCEEEEEEESSCCHHHHHHHHHHTSTT------CSEEEEEE--EESCTTCT---------------H------------
T ss_pred CCCccEEEEEECCcHHHHHHHHHHHcCC------CCcEEEEE--EECCcccH---------------H------------
Confidence 3456899999999887766666542211 13455554 33322110 0
Q ss_pred HHHHhhhcCCcceEEEEE-c-CC---hHHHHHHHHHhcCCcEEEEeccCCcccchh
Q 030516 84 AKEICSSKSVHDFVVEVV-E-GD---ARNILCEAVEKHHASILVVGSHGYGAIKRY 134 (176)
Q Consensus 84 ~~~~~~~~~~~~v~~~v~-~-G~---~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~ 134 (176)
.+.+.+++.. +...-. . .+ -.+++.+..++.++|++|+..-++---..+
T Consensus 50 -l~~A~~~gIp-~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~~il~~~~ 103 (209)
T 4ds3_A 50 -LAKAEAAGIA-TQVFKRKDFASKEAHEDAILAALDVLKPDIICLAGYMRLLSGRF 103 (209)
T ss_dssp -HHHHHHTTCC-EEECCGGGSSSHHHHHHHHHHHHHHHCCSEEEESSCCSCCCHHH
T ss_pred -HHHHHHcCCC-EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEeccccCcCHHH
Confidence 1344555542 222111 1 12 137899999999999999998776433333
No 93
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=40.01 E-value=38 Score=24.83 Aligned_cols=35 Identities=6% Similarity=-0.150 Sum_probs=27.9
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEE
Q 030516 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVH 46 (176)
Q Consensus 5 ~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvh 46 (176)
..++|++++-++..+.++.+.+..|.+. + +|+++-
T Consensus 18 ~~k~IllgvTGsiaa~k~~~ll~~L~~~------g-~V~vv~ 52 (209)
T 1mvl_A 18 RKPRVLLAASGSVAAIKFGNLCHCFTEW------A-EVRAVV 52 (209)
T ss_dssp -CCEEEEEECSSGGGGGHHHHHHHHHTT------S-EEEEEE
T ss_pred CCCEEEEEEeCcHHHHHHHHHHHHHhcC------C-CEEEEE
Confidence 3579999999999999998888888665 5 777664
No 94
>2dfa_A Hypothetical UPF0271 protein TTHB195; lactam utilization protein, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} SCOP: c.6.2.5
Probab=39.45 E-value=1.2e+02 Score=22.88 Aligned_cols=108 Identities=9% Similarity=0.018 Sum_probs=68.1
Q ss_pred CEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEe-cCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHH
Q 030516 7 QTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHAR-PSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAK 85 (176)
Q Consensus 7 ~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 85 (176)
...-|+.-+.......++...++|++. |..| .-|.- ++.... +.. ..+--.++.......++-.+.
T Consensus 29 tSANIACGfHAGDp~~M~~tv~lA~~~-----gV~I-GAHPgypDl~GF------GRR-~m~~s~~el~~~v~YQiGAL~ 95 (250)
T 2dfa_A 29 SSANLACGFHGGSPGRILEAVRLAKAH-----GVAV-GAHPGFPDLVGF------GRR-EMALSPEEVYADVLYQIGALS 95 (250)
T ss_dssp SEEEEECSSSSCCHHHHHHHHHHHHHT-----TCEE-EEECCCSCTTTT------TCS-CCCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccCCCHHHHHHHHHHHHHc-----CCeE-ecCCCCCcccCC------CCC-CCCCCHHHHHHHHHHHHHHHH
Confidence 344456666666778899999999993 3333 44543 322211 111 112224566677777777788
Q ss_pred HHhhhcCCcceEEEEEcC----------ChHHHHHHHHHhcCCcEEEEeccCC
Q 030516 86 EICSSKSVHDFVVEVVEG----------DARNILCEAVEKHHASILVVGSHGY 128 (176)
Q Consensus 86 ~~~~~~~~~~v~~~v~~G----------~~~~~I~~~a~~~~~DlIV~Gs~g~ 128 (176)
..+...+. +++..--.| ..+++|++.+++.+++|+++|..+.
T Consensus 96 a~a~~~G~-~l~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~gs 147 (250)
T 2dfa_A 96 AFLKAEGL-PLHHVKPHGALYLKACRDRETARAIALAVKAFDPGLPLVVLPGT 147 (250)
T ss_dssp HHHHHTTC-CCCCBCCCHHHHHHHHHCHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred HHHHHcCC-EeEEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecCCh
Confidence 88877763 343322223 3689999999999999999996664
No 95
>1v6t_A Hypothetical UPF0271 protein PH0986; TIM-barrel, lactam utilization protein, structural genomics; 1.70A {Pyrococcus horikoshii} SCOP: c.6.2.5
Probab=39.35 E-value=1.2e+02 Score=22.92 Aligned_cols=108 Identities=10% Similarity=0.091 Sum_probs=69.4
Q ss_pred CEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEe-cCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHH
Q 030516 7 QTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHAR-PSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAK 85 (176)
Q Consensus 7 ~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 85 (176)
...-|+.-+.......++...++|++. |..| .-|.- ++.... +.. ..+--.++.......++-.+.
T Consensus 29 tSANIACGfHAGDp~~M~~tv~lA~~~-----gV~I-GAHPgypDl~GF------GRR-~m~~s~~el~~~v~YQiGAL~ 95 (255)
T 1v6t_A 29 TSANVACGWHAGDPLVMRKTVRLAKEN-----DVQV-GAHPGYPDLMGF------GRR-YMKLTPEEARNYILYQVGALY 95 (255)
T ss_dssp SEEEEECSSSSCCHHHHHHHHHHHHHT-----TCEE-EEECCCSCTTTT------TCS-CCCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccCCCHHHHHHHHHHHHHc-----CCeE-ecCCCCCcccCC------CCC-CCCCCHHHHHHHHHHHHHHHH
Confidence 344456666666778899999999993 3333 44543 322211 111 112224666677777788888
Q ss_pred HHhhhcCCcceEEEEEcC----------ChHHHHHHHHHhcCCcEEEEeccCC
Q 030516 86 EICSSKSVHDFVVEVVEG----------DARNILCEAVEKHHASILVVGSHGY 128 (176)
Q Consensus 86 ~~~~~~~~~~v~~~v~~G----------~~~~~I~~~a~~~~~DlIV~Gs~g~ 128 (176)
..+...+. +++..--.| ..+++|++.+++.+++|+++|..+.
T Consensus 96 a~a~~~G~-~l~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~gs 147 (255)
T 1v6t_A 96 AFAKAEGL-ELQHVKPHGALYNAMVKEEDLARAVIEGILDFDKDLILVTLSNS 147 (255)
T ss_dssp HHHHHTTC-CEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHCTTCEEEEETTC
T ss_pred HHHHHcCC-EeEEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecCCh
Confidence 88887764 354433333 3689999999999999999997664
No 96
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=38.99 E-value=76 Score=21.59 Aligned_cols=47 Identities=17% Similarity=0.072 Sum_probs=25.5
Q ss_pred HHHHHHHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCc
Q 030516 80 VVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYG 129 (176)
Q Consensus 80 ~l~~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~ 129 (176)
..+.+.+.+.+.+. +++..-........+..... ++|.||+|+.-.+
T Consensus 17 ~A~~ia~~l~~~g~-~v~~~~~~~~~~~~~~~~~~--~~d~ii~Gspty~ 63 (161)
T 3hly_A 17 LSQAIGRGLVKTGV-AVEMVDLRAVDPQELIEAVS--SARGIVLGTPPSQ 63 (161)
T ss_dssp HHHHHHHHHHHTTC-CEEEEETTTCCHHHHHHHHH--HCSEEEEECCBSS
T ss_pred HHHHHHHHHHhCCC-eEEEEECCCCCHHHHHHHHH--hCCEEEEEcCCcC
Confidence 33333444444443 34443333333445555555 7999999988764
No 97
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=37.86 E-value=54 Score=23.76 Aligned_cols=35 Identities=11% Similarity=0.163 Sum_probs=28.3
Q ss_pred CEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEE
Q 030516 7 QTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVH 46 (176)
Q Consensus 7 ~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvh 46 (176)
++|++++-++..+.++.+.+..|.+. .|++|+++-
T Consensus 1 ~~IllgvTGsiaa~k~~~ll~~L~~~-----~g~~V~vv~ 35 (197)
T 1sbz_A 1 MKLIVGMTGATGAPLGVALLQALREM-----PNVETHLVM 35 (197)
T ss_dssp CEEEEEECSSSCHHHHHHHHHHHHTC-----TTCEEEEEE
T ss_pred CEEEEEEeChHHHHHHHHHHHHHHhc-----cCCEEEEEE
Confidence 37999999999999999988888654 257888774
No 98
>1xrs_A D-lysine 5,6-aminomutase alpha subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.1.19.4
Probab=37.58 E-value=1.3e+02 Score=24.84 Aligned_cols=42 Identities=17% Similarity=0.247 Sum_probs=30.3
Q ss_pred eEEEEEcCChHHHHHH--HHHhcCCcEEE-EeccCCcccchhccc
Q 030516 96 FVVEVVEGDARNILCE--AVEKHHASILV-VGSHGYGAIKRYKST 137 (176)
Q Consensus 96 v~~~v~~G~~~~~I~~--~a~~~~~DlIV-~Gs~g~~~l~~~l~g 137 (176)
+.+.|..|+.-+.|.+ .|.++++|.|. +.+.|.|.+..+.-|
T Consensus 153 iy~ivAtG~i~eDi~qa~aAA~~GAD~IaVIRttgQSllDyvp~G 197 (516)
T 1xrs_A 153 LYVIVATGNIYEDITQAVAAAKQGADVIAVIRTTGQSLLDYVPYG 197 (516)
T ss_dssp EEEEECCSCHHHHHHHHHHHHHTTCSEEEECCCTTGGGCSSCCCS
T ss_pred EEEEEecCchHHHHHHHHHHHHcCCCEEEEecccchhhhcccCCC
Confidence 5566778998887764 68899999885 556676666655544
No 99
>3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans}
Probab=36.79 E-value=1.1e+02 Score=21.61 Aligned_cols=61 Identities=18% Similarity=0.274 Sum_probs=37.1
Q ss_pred CChHHHHHHHHHhcCCcEEEEeccCCc----ccchhcccc---------------cchhhhheeeccccccccccCcccc
Q 030516 103 GDARNILCEAVEKHHASILVVGSHGYG----AIKRYKSTI---------------SCFIWYLIFSRVELGMVNCFGYYSY 163 (176)
Q Consensus 103 G~~~~~I~~~a~~~~~DlIV~Gs~g~~----~l~~~l~gv---------------s~~~~~~~~~~~~~~~~~~~~~~~~ 163 (176)
|...+.|-+. ...++|-||+-.-+-+ ++...+.++ ..|--...+|.+-+.+|--||..+|
T Consensus 70 GeLId~Ih~A-~~~~~dgIIINpgAyTHtSvAlrDAL~~v~~P~VEVHiSNihaRE~FRh~S~~s~~a~GvI~G~G~~gY 148 (167)
T 3kip_A 70 GFIIDRIHEA-KRQGVGFVVINAGAYTHTSVGIRDALLGTAIPFIEVHITNVHQREPFRHQSYLSDKAVAVICGLGVYGY 148 (167)
T ss_dssp HHHHHHHHHH-HHTTCCEEEEECGGGGGTCHHHHHHHHHTTCCEEEEESSCGGGSCGGGGCCSSGGGSSEEEESSTTHHH
T ss_pred HHHHHHHHHh-hhcCccEEEEccccceeccHHHHHHHHhcCCCEEEEEcCCccccccchhcccccccceEEEEeCChhhH
Confidence 3344444443 2246999999865543 334333222 1355556778888888888888888
Q ss_pred e
Q 030516 164 L 164 (176)
Q Consensus 164 ~ 164 (176)
.
T Consensus 149 ~ 149 (167)
T 3kip_A 149 T 149 (167)
T ss_dssp H
T ss_pred H
Confidence 5
No 100
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=36.49 E-value=14 Score=34.59 Aligned_cols=57 Identities=5% Similarity=0.011 Sum_probs=38.1
Q ss_pred HHHHHHHHhcCCcEEEEeccCCcccchhcccccchhhhhe-----eeccccccccccCcccce
Q 030516 107 NILCEAVEKHHASILVVGSHGYGAIKRYKSTISCFIWYLI-----FSRVELGMVNCFGYYSYL 164 (176)
Q Consensus 107 ~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~gvs~~~~~~~-----~~~~~~~~~~~~~~~~~~ 164 (176)
+.+.+.++++++++|++|..++ ...+++..+.+.+...- ...+++.||+-.|-+-|+
T Consensus 565 ~~l~~li~~~~~~vIaIGn~sr-et~~l~~~l~~~i~~~~~~~~~~~~i~vviV~e~gAsvYs 626 (1219)
T 3psi_A 565 DTLDNIIQSCQPNAIGINGPNP-KTQKFYKRLQEVLHKKQIVDSRGHTIPIIYVEDEVAIRYQ 626 (1219)
T ss_dssp HHHHHHHHHHCCSEEEECCSST-HHHHHHHHHHHHHHHTTCBCSSSCBCCEEECCCTTHHHHH
T ss_pred HHHHHHHHHcCCcEEEECCCCH-HHHHHHHHHHHHHHhhccccccCCCccEEEECchHHHHHh
Confidence 7889999999999999998433 23333322222222211 245889999999988776
No 101
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=36.40 E-value=49 Score=23.62 Aligned_cols=39 Identities=8% Similarity=0.015 Sum_probs=26.9
Q ss_pred CCEEEEEec-CCH--hHHHHHHHHHHHhcccCCCCCCcEEEEEEEecC
Q 030516 6 TQTMVVGID-DSE--QSTYALQWTLDHFFANSTVNPPFKLVIVHARPS 50 (176)
Q Consensus 6 ~~~ILVavD-~s~--~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~ 50 (176)
.++|+|-+. .++ .++.+++++.+++.. ++++.++...+.
T Consensus 2 ~k~I~vi~GS~R~~S~~~~la~~~~~~~~~------~~~~~~idl~dL 43 (190)
T 3u7r_A 2 VKTVAVMVGSLRKDSLNHKLMKVLQKLAEG------RLEFHLLHIGDL 43 (190)
T ss_dssp CEEEEEEESCCSTTCHHHHHHHHHHHHHTT------TEEEEECCGGGS
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHhccC------CCEEEEEecccC
Confidence 378887663 222 457888888888876 678888876543
No 102
>3iwv_A 5-hydroxyisourate hydrolase; transthyretin, molecular evolution, URIC acid degradation, T hormones, peroxisome, purine metabolism; 1.68A {Danio rerio} PDB: 3iwu_A 3q1e_A 2h6u_A 2h1x_A
Probab=35.60 E-value=7.5 Score=26.81 Aligned_cols=14 Identities=29% Similarity=0.394 Sum_probs=11.8
Q ss_pred ccccccccccCcccc
Q 030516 149 RVELGMVNCFGYYSY 163 (176)
Q Consensus 149 ~~~~~~~~~~~~~~~ 163 (176)
-+|++ +.|||||.|
T Consensus 122 HVPLL-lSP~gYSTY 135 (138)
T 3iwv_A 122 HVPLL-LSRFSYSTT 135 (138)
T ss_dssp ECCEE-EETTEEEEE
T ss_pred EEeEE-ecCCcceee
Confidence 37888 889999988
No 103
>2g2n_A Transthyretin-like protein; transthyretin-related protein, unknown functi; 1.65A {Escherichia coli} PDB: 2g2p_A 2igl_A 2gpz_A
Probab=34.81 E-value=7.1 Score=26.01 Aligned_cols=13 Identities=38% Similarity=0.761 Sum_probs=11.3
Q ss_pred cccccccccCcccc
Q 030516 150 VELGMVNCFGYYSY 163 (176)
Q Consensus 150 ~~~~~~~~~~~~~~ 163 (176)
+|++ +.+||||.|
T Consensus 99 VPLL-lSP~~YSTY 111 (114)
T 2g2n_A 99 VPLL-LSQYGYSTY 111 (114)
T ss_dssp EEEE-EETTEEEEE
T ss_pred EeEE-ecCCccccc
Confidence 7887 889999988
No 104
>2h0e_A Transthyretin-like protein PUCM; beta sandwitch, hydrolase, HIU; 2.20A {Bacillus subtilis} PDB: 2h0f_A* 2h0j_A*
Probab=34.57 E-value=8.1 Score=26.02 Aligned_cols=14 Identities=36% Similarity=0.688 Sum_probs=11.9
Q ss_pred ccccccccccCcccc
Q 030516 149 RVELGMVNCFGYYSY 163 (176)
Q Consensus 149 ~~~~~~~~~~~~~~~ 163 (176)
-+|++ +.+||||.|
T Consensus 105 HVPLL-lSP~gYSTY 118 (121)
T 2h0e_A 105 HIPLL-LSPFGYQVY 118 (121)
T ss_dssp ECCEE-EETTEEEEC
T ss_pred EEeEE-ecCCccccc
Confidence 37888 889999988
No 105
>3qva_A Transthyretin-like protein; transthyretin-related protein, 5-hydroxyisourate hydrolase,; HET: PO4; 1.75A {Klebsiella pneumoniae subsp}
Probab=34.43 E-value=8.1 Score=25.83 Aligned_cols=14 Identities=14% Similarity=0.289 Sum_probs=11.5
Q ss_pred ccccccccccCcccc
Q 030516 149 RVELGMVNCFGYYSY 163 (176)
Q Consensus 149 ~~~~~~~~~~~~~~~ 163 (176)
-+|++ +.|||||.|
T Consensus 100 HVPLL-lSP~gYSTY 113 (116)
T 3qva_A 100 HLPFL-IAPGGWSTY 113 (116)
T ss_dssp ECCEE-EETTEEEEE
T ss_pred EEeEE-ecCCccccc
Confidence 37887 889999988
No 106
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=34.17 E-value=1.6e+02 Score=22.63 Aligned_cols=87 Identities=13% Similarity=0.043 Sum_probs=48.7
Q ss_pred CCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHHH
Q 030516 6 TQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAK 85 (176)
Q Consensus 6 ~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 85 (176)
..+++|++.+ -+|.-++-.+. ++ |.+++.+|... . +...+.+++..+.+.
T Consensus 179 ~~kvlvllSG-vDS~vaa~ll~---~~------G~~v~~v~~~~--~------------------~~~~~~a~~~a~~l~ 228 (307)
T 1vbk_A 179 EGRMIGILHD-ELSALAIFLMM---KR------GVEVIPVYIGK--D------------------DKNLEKVRSLWNLLK 228 (307)
T ss_dssp TCEEEEECSS-HHHHHHHHHHH---HB------TCEEEEEEESC--S------------------SHHHHHHHHHHHHHH
T ss_pred CCcEEEEEeC-CcHHHHHHHHH---hC------CCeEEEEEEEE--C------------------HHHHHHHHHHHHHHh
Confidence 3689999999 88865544332 23 77999999851 0 011122222222221
Q ss_pred HHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccC
Q 030516 86 EICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHG 127 (176)
Q Consensus 86 ~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g 127 (176)
.+ ... ..+...++.. ...+.++|++.++|.|+.|.+.
T Consensus 229 ~~--~~~-~~i~~~vv~~--~~~~~~~A~~~ga~~I~tG~~~ 265 (307)
T 1vbk_A 229 RY--SYG-SKGFLVVAES--FDRVLKLIRDFGVKGVIKGLRP 265 (307)
T ss_dssp TT--CTT-SCCCCEEESS--HHHHHHHHHHHTCCEEECCCCG
T ss_pred hh--ccC-CCCcEEEeCC--CHHHHHHHHHcCCCEEEECccc
Confidence 10 011 1233444431 3334499999999999999763
No 107
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB: 1h0r_A* 1h0s_A* 2dhq_A 2xb8_A* 2y71_A* 2y76_A* 2y77_A* 3n76_A* 3n7a_A* 3n86_A* 3n87_A* 3n8n_A*
Probab=33.90 E-value=68 Score=22.20 Aligned_cols=82 Identities=17% Similarity=0.248 Sum_probs=47.3
Q ss_pred HHHHHHHHhhhcCCcceEEEEEc--CChHHHHHHHHHhcCCcEEEEeccCCc----ccchhccccc--------------
Q 030516 80 VVEEAKEICSSKSVHDFVVEVVE--GDARNILCEAVEKHHASILVVGSHGYG----AIKRYKSTIS-------------- 139 (176)
Q Consensus 80 ~l~~~~~~~~~~~~~~v~~~v~~--G~~~~~I~~~a~~~~~DlIV~Gs~g~~----~l~~~l~gvs-------------- 139 (176)
..+.+++.+.+.+. ++++.... |...+.|-+... +.|-||+-.-+-+ ++...+.+++
T Consensus 32 i~~~l~~~a~~~g~-~~~~~QSN~EgeLId~Ih~a~~--~~dgiiINpgA~THtSvAlrDAl~~v~~P~VEVHiSNi~aR 108 (146)
T 1h05_A 32 LVALIEREAAELGL-KAVVRQSDSEAQLLDWIHQAAD--AAEPVILNAGGLTHTSVALRDACAELSAPLIEVHISNVHAR 108 (146)
T ss_dssp HHHHHHHHHHHTTC-EEEEEECSCHHHHHHHHHHHHH--HTCCEEEECGGGGGTCHHHHHHHHTCCSCEEEEESSCGGGS
T ss_pred HHHHHHHHHHHcCC-EEEEEeeCCHHHHHHHHHHhhh--cCcEEEECchhhccccHHHHHHHHhCCCCEEEEEecCcccc
Confidence 33444455555553 45554433 445555555544 4899999754432 3333332222
Q ss_pred -chhhhheeeccccccccccCcccce
Q 030516 140 -CFIWYLIFSRVELGMVNCFGYYSYL 164 (176)
Q Consensus 140 -~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (176)
+|--.-.+|.+-+.+|--||..+|.
T Consensus 109 E~FRh~S~~s~~a~GvI~G~G~~gY~ 134 (146)
T 1h05_A 109 EEFRRHSYLSPIATGVIVGLGIQGYL 134 (146)
T ss_dssp CGGGGCCSSGGGSSEEEESSTTHHHH
T ss_pred cccccccccccceeEEEEecCHHHHH
Confidence 3445556788888888888888884
No 108
>1gqo_A Dehydroquinase; dehydratase, lyase; 2.10A {Bacillus subtilis} SCOP: c.23.13.1
Probab=33.14 E-value=70 Score=22.03 Aligned_cols=82 Identities=20% Similarity=0.221 Sum_probs=44.1
Q ss_pred HHHHHHHHhhhcCCcceEEEEEc--CChHHHHHHHHHhcCCcEEEEeccCCc----ccchhccccc--------------
Q 030516 80 VVEEAKEICSSKSVHDFVVEVVE--GDARNILCEAVEKHHASILVVGSHGYG----AIKRYKSTIS-------------- 139 (176)
Q Consensus 80 ~l~~~~~~~~~~~~~~v~~~v~~--G~~~~~I~~~a~~~~~DlIV~Gs~g~~----~l~~~l~gvs-------------- 139 (176)
..+.+++.+.+.+. ++++.... |...+.|-+.. .+.|-||+-.-+-+ ++...+.+++
T Consensus 30 i~~~l~~~a~~~g~-~~~~~QSN~EgeLid~Ih~a~--~~~dgiiiNpgA~THtSvAlrDAl~~v~~P~VEVHiSNi~aR 106 (143)
T 1gqo_A 30 IETDLFQFAEALHI-QLTFFQSNHEGDLIDAIHEAE--EQYSGIVLNPGALSHYSYAIRDAVSSISLPVVEVHLSNLYAR 106 (143)
T ss_dssp HHHHHHHHHHHHTC-EEEEEECSCHHHHHHHHHHHT--TTCSEEEEECGGGGGTCHHHHHHHHTSCSCEEEEESSCGGGS
T ss_pred HHHHHHHHHHHcCC-EEEEEeeCCHHHHHHHHHHhh--hcCcEEEEccchhccccHHHHHHHHhCCCCEEEEEecCcccc
Confidence 33444455555553 35544432 33444444442 26899999754432 3333332221
Q ss_pred -chhhhheeeccccccccccCcccce
Q 030516 140 -CFIWYLIFSRVELGMVNCFGYYSYL 164 (176)
Q Consensus 140 -~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (176)
+|-....+|.+-+.+|--||..+|.
T Consensus 107 E~FRh~S~~s~~a~GvI~G~G~~gY~ 132 (143)
T 1gqo_A 107 EEFRHQSVIAPVAKGQIVGLGAEGYK 132 (143)
T ss_dssp CGGGGCCSSGGGSSEEEESSTTHHHH
T ss_pred cccccccccccceeEEEEecCHHHHH
Confidence 2444566777777777778877774
No 109
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=32.29 E-value=80 Score=22.43 Aligned_cols=81 Identities=17% Similarity=0.243 Sum_probs=46.2
Q ss_pred HHHHHHHhhhcCCcceEEEEEc--CChHHHHHHHHHhcCCcEEEEeccCCc----ccchhccccc---------------
Q 030516 81 VEEAKEICSSKSVHDFVVEVVE--GDARNILCEAVEKHHASILVVGSHGYG----AIKRYKSTIS--------------- 139 (176)
Q Consensus 81 l~~~~~~~~~~~~~~v~~~v~~--G~~~~~I~~~a~~~~~DlIV~Gs~g~~----~l~~~l~gvs--------------- 139 (176)
.+..++.+.+.+. ++++.... |...+.|-+... ++|-||+-.-+-+ ++...+.++.
T Consensus 59 ~~~l~~~a~~~G~-~l~~~QSN~EGeLId~Ih~A~~--~~dgIIINPgAyTHtSvAlrDAL~~v~~P~VEVHiSNihaRE 135 (172)
T 3n8k_A 59 VALIEREAAELGL-KAVVRQSDSEAQLLDWIHQAAD--AAEPVILNAGGLTHTSVALRDACAELSAPLIEVHISNVHARE 135 (172)
T ss_dssp HHHHHHHHHHTTC-EEEEEECSCHHHHHHHHHHHHH--HTCCEEEECGGGGGTCHHHHHHHTTCCSCEEEEESSCTTSSC
T ss_pred HHHHHHHHHHcCC-EEEEEecCCHHHHHHHHHHhhh--cCcEEEECcchhhhhhHHHHHHHHhCCCCEEEEEcCCchhcc
Confidence 3334445555553 45554433 445555555433 5899999865543 4444443222
Q ss_pred chhhhheeeccccccccccCcccce
Q 030516 140 CFIWYLIFSRVELGMVNCFGYYSYL 164 (176)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (176)
+|--.-.+|.+-+.+|--||..+|.
T Consensus 136 ~FRhhS~is~~a~GvI~G~G~~gY~ 160 (172)
T 3n8k_A 136 EFRRHSYLSPIATGVIVGLGIQGYL 160 (172)
T ss_dssp GGGGCCSSGGGSSEEEESSTTHHHH
T ss_pred cccccccccccceEEEEeCChHHHH
Confidence 3445556777777888888887774
No 110
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=32.07 E-value=14 Score=25.66 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=17.5
Q ss_pred hHHHHHHHHHhcCCcEEEEec
Q 030516 105 ARNILCEAVEKHHASILVVGS 125 (176)
Q Consensus 105 ~~~~I~~~a~~~~~DlIV~Gs 125 (176)
..+.|.+.+++++++.||+|-
T Consensus 43 ~~~~l~~li~~~~~~~ivVGl 63 (150)
T 1vhx_A 43 GLSRLSELIKDYTIDKIVLGF 63 (150)
T ss_dssp CHHHHHHHHTTSEEEEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEee
Confidence 577888888888888888883
No 111
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=31.30 E-value=41 Score=24.54 Aligned_cols=22 Identities=14% Similarity=0.181 Sum_probs=19.9
Q ss_pred cCChHHHHHHHHHhcCCcEEEE
Q 030516 102 EGDARNILCEAVEKHHASILVV 123 (176)
Q Consensus 102 ~G~~~~~I~~~a~~~~~DlIV~ 123 (176)
..-|.+.+++.++++++|+|.+
T Consensus 128 ~~vp~e~iv~~~~~~~~d~v~l 149 (215)
T 3ezx_A 128 VDVLNENVVEEAAKHKGEKVLL 149 (215)
T ss_dssp SSCCHHHHHHHHHHTTTSCEEE
T ss_pred CCCCHHHHHHHHHHcCCCEEEE
Confidence 3449999999999999999999
No 112
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=31.10 E-value=56 Score=25.70 Aligned_cols=69 Identities=10% Similarity=-0.007 Sum_probs=42.2
Q ss_pred eEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcccchhcccccchhhhheeeccccccccccCcccceeeeeeeeee
Q 030516 96 FVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKSTISCFIWYLIFSRVELGMVNCFGYYSYLSIIKRTQIC 173 (176)
Q Consensus 96 v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~gvs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (176)
+++....+...+...++.+ ++|+||.++-.... +.+ ++++|... ++|+......|.+.|.-...+...|
T Consensus 106 v~v~~~~~~~~~~~~~~~~--~~dvVv~~~d~~~~-r~~---ln~~~~~~---~ip~i~~~~~G~~G~v~~d~~~~~~ 174 (346)
T 1y8q_A 106 VDVKVDTEDIEKKPESFFT--QFDAVCLTCCSRDV-IVK---VDQICHKN---SIKFFTGDVFGYHGYTFANLGEHEF 174 (346)
T ss_dssp SEEEEECSCGGGCCHHHHT--TCSEEEEESCCHHH-HHH---HHHHHHHT---TCEEEEEEEEBTEEEEEEECSEEEE
T ss_pred eEEEEEecccCcchHHHhc--CCCEEEEcCCCHHH-HHH---HHHHHHHc---CCCEEEEeecccEEEEEEecCCCCE
Confidence 5555555554333344555 89999988655432 222 35666653 5777777789999888766555444
No 113
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=30.59 E-value=2e+02 Score=22.81 Aligned_cols=36 Identities=8% Similarity=0.182 Sum_probs=26.3
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEec
Q 030516 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (176)
Q Consensus 5 ~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~ 49 (176)
..++|+|++++.-+|..++..+.+ . +.+|+.+|+..
T Consensus 16 ~~~kVvVa~SGGvDSsv~a~lL~~---~------G~~V~~v~~~~ 51 (380)
T 2der_A 16 TAKKVIVGMSGGVDSSVSAWLLQQ---Q------GYQVEGLFMKN 51 (380)
T ss_dssp -CCEEEEECCSCSTTHHHHHHHHT---T------CCEEEEEEEEC
T ss_pred CCCEEEEEEEChHHHHHHHHHHHH---c------CCeEEEEEEEc
Confidence 457899999999888877665432 2 55899998853
No 114
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=30.35 E-value=1.8e+02 Score=22.18 Aligned_cols=25 Identities=8% Similarity=0.119 Sum_probs=19.4
Q ss_pred HHHHHHHHHhcCCcEEEEeccCCcc
Q 030516 106 RNILCEAVEKHHASILVVGSHGYGA 130 (176)
Q Consensus 106 ~~~I~~~a~~~~~DlIV~Gs~g~~~ 130 (176)
.+.+++..++.++|+||+..-++--
T Consensus 155 ~~~~~~~l~~~~~Dlivlagy~~il 179 (288)
T 3obi_A 155 EAAITALIAQTHTDLVVLARYMQIL 179 (288)
T ss_dssp HHHHHHHHHHHTCCEEEESSCCSCC
T ss_pred HHHHHHHHHhcCCCEEEhhhhhhhC
Confidence 3568888888899999998776643
No 115
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=30.27 E-value=1.1e+02 Score=19.54 Aligned_cols=35 Identities=11% Similarity=0.115 Sum_probs=18.3
Q ss_pred HHHHHHHHhhhcCCcceEEEEEcCChHHHHHHHHHh
Q 030516 80 VVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEK 115 (176)
Q Consensus 80 ~l~~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~ 115 (176)
.++++.......|. ++.+.....+....+-+..++
T Consensus 89 rleefsrevrrrgf-evrtvtspddfkkslerlire 123 (134)
T 2l69_A 89 RLEEFSREVRRRGF-EVRTVTSPDDFKKSLERLIRE 123 (134)
T ss_dssp HHHHHHHHHHHTTC-CEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCc-eEEEecChHHHHHHHHHHHHH
Confidence 45555555555553 354444445555566666554
No 116
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=29.11 E-value=46 Score=23.29 Aligned_cols=43 Identities=9% Similarity=0.017 Sum_probs=23.4
Q ss_pred CCCCCCCEEEEEecCC---HhHHHHHHHHHHHhcccCCCCCCcEEEEEEEec
Q 030516 1 MATAETQTMVVGIDDS---EQSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (176)
Q Consensus 1 m~~~~~~~ILVavD~s---~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~ 49 (176)
|+|+...+||+.+... ..+..+++++.+.+.. +.++.++.+.+
T Consensus 1 m~m~~~Mkilii~gS~r~~g~t~~la~~i~~~l~~------g~~v~~~dl~~ 46 (193)
T 1rtt_A 1 MSLSDDIKVLGISGSLRSGSYNSAALQEAIGLVPP------GMSIELADISG 46 (193)
T ss_dssp ------CEEEEEESCCSTTCHHHHHHHHHHTTCCT------TCEEEECCCTT
T ss_pred CCCCCCceEEEEECCCCCCChHHHHHHHHHHhccC------CCeEEEEeHHH
Confidence 6655555787776432 3566667766665553 66888777644
No 117
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=27.78 E-value=1.1e+02 Score=21.19 Aligned_cols=84 Identities=14% Similarity=0.205 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhhhcCCcceEEEEEc--CChHHHHHHHHHhcCCcEEEEeccCCc----ccchh---cccc----------
Q 030516 78 ARVVEEAKEICSSKSVHDFVVEVVE--GDARNILCEAVEKHHASILVVGSHGYG----AIKRY---KSTI---------- 138 (176)
Q Consensus 78 ~~~l~~~~~~~~~~~~~~v~~~v~~--G~~~~~I~~~a~~~~~DlIV~Gs~g~~----~l~~~---l~gv---------- 138 (176)
++..+..++.+.+.+ .++++.... |...+.|-+... ++|-||+-.-+-+ +++.. +.++
T Consensus 32 ~di~~~l~~~a~~~g-~~v~~~QSN~EgeLId~Ih~a~~--~~dgiiINpgA~THtSvAlrDAl~~l~~~~~P~VEVHiS 108 (151)
T 3u80_A 32 DTLRKLCAEWGKDLG-LEVEVRQTDDEAEMVRWMHQAAD--EKTPVVMNPAAFTHYSYALADAAHMVIDENLPLMEVHIS 108 (151)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEECSCHHHHHHHHHHHHH--HTCCEEEECTTCCSCCHHHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHHHHHHHHHcC-CEEEEEecCCHHHHHHHHHHhhh--cCcEEEECcchhhhhhHHHHHHHHHHhhcCCCEEEEEcC
Confidence 333444445555555 245544432 445555555433 5899999866554 33443 2111
Q ss_pred -----cchhhhheeeccccccccccCcccce
Q 030516 139 -----SCFIWYLIFSRVELGMVNCFGYYSYL 164 (176)
Q Consensus 139 -----s~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (176)
.+|--.-.+|.+-+.+|--||..+|.
T Consensus 109 Ni~aRE~FRh~S~~s~~a~G~I~G~G~~gY~ 139 (151)
T 3u80_A 109 NPSARDEFRKRSVISPVATGTITGMGFYGYK 139 (151)
T ss_dssp CCC---------CSCCCCSEEEESSTTHHHH
T ss_pred CcccccchhhcccccccceEEEEecChHHHH
Confidence 12444556777777888888887774
No 118
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=27.73 E-value=99 Score=21.42 Aligned_cols=39 Identities=8% Similarity=-0.141 Sum_probs=26.0
Q ss_pred CEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecC
Q 030516 7 QTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPS 50 (176)
Q Consensus 7 ~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~ 50 (176)
.+||+.+.....+..+++.+.+.+... +.++.++++.+.
T Consensus 5 mkilii~~S~g~T~~la~~i~~~l~~~-----g~~v~~~~l~~~ 43 (199)
T 2zki_A 5 PNILVLFYGYGSIVELAKEIGKGAEEA-----GAEVKIRRVRET 43 (199)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHHHHH-----SCEEEEEECCCC
T ss_pred cEEEEEEeCccHHHHHHHHHHHHHHhC-----CCEEEEEehhHh
Confidence 367766644455677778777766652 678888877543
No 119
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=26.10 E-value=1.8e+02 Score=20.80 Aligned_cols=35 Identities=17% Similarity=0.132 Sum_probs=26.9
Q ss_pred CCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEec
Q 030516 6 TQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (176)
Q Consensus 6 ~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~ 49 (176)
+++++|++.+.-+|..++.++.+.. .+|+.+|+-.
T Consensus 2 ~~kvvv~lSGG~DS~~~l~ll~~~~---------~~v~av~~~~ 36 (232)
T 2pg3_A 2 MKRAVVVFSGGQDSTTCLIQALQDY---------DDVHCITFDY 36 (232)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHC---------SEEEEEEEES
T ss_pred CCCEEEEecCcHHHHHHHHHHHHcC---------CCEEEEEEEC
Confidence 3689999999999998888775532 3788888743
No 120
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus}
Probab=25.90 E-value=1.1e+02 Score=21.13 Aligned_cols=81 Identities=15% Similarity=0.105 Sum_probs=42.5
Q ss_pred HHHHHHhhhcCCcceEEEEEc--CChHHHHHHHHHhcCCcEEEEeccCC----cccchhccccc---------------c
Q 030516 82 EEAKEICSSKSVHDFVVEVVE--GDARNILCEAVEKHHASILVVGSHGY----GAIKRYKSTIS---------------C 140 (176)
Q Consensus 82 ~~~~~~~~~~~~~~v~~~v~~--G~~~~~I~~~a~~~~~DlIV~Gs~g~----~~l~~~l~gvs---------------~ 140 (176)
+.+++.+.+.+. ++++.... |...+.|-+. ...+.|-||+-.-+- -++...+.+++ +
T Consensus 31 ~~l~~~a~~~g~-~v~~~QSN~EgeLId~Ih~a-~~~~~dgiIINpgA~THtSvAlrDAl~~v~~P~VEVHiSNi~aRE~ 108 (149)
T 2uyg_A 31 ALCEAWGAELGL-GVVFRQTNYEGQLIEWVQQA-HQEGFLAIVLNPGALTHYSYALLDAIRAQPLPVVEVHLTNLHAREE 108 (149)
T ss_dssp HHHHHHHHHTTC-CEEEEECSCHHHHHHHHHHT-TTTTCSEEEEECGGGGGTCHHHHHHHHTSCSCEEEEESSCGGGSCG
T ss_pred HHHHHHHHHcCC-EEEEEeeCCHHHHHHHHHHh-ccCCeeEEEEccchhccccHHHHHHHHhCCCCEEEEEecCcccccc
Confidence 334455555553 45554432 3333333332 223388999975443 23333332221 3
Q ss_pred hhhhheeeccccccccccCcccce
Q 030516 141 FIWYLIFSRVELGMVNCFGYYSYL 164 (176)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~ 164 (176)
|-....+|.+-+.+|--||..+|.
T Consensus 109 FRh~S~~s~~a~GvI~G~G~~gY~ 132 (149)
T 2uyg_A 109 FRRHSVTAPACRGIVSGFGPLSYK 132 (149)
T ss_dssp GGGCCSSGGGSSEEEESSTTHHHH
T ss_pred cccccccccceeEEEEecCHHHHH
Confidence 444566777777788888887774
No 121
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=25.70 E-value=1.9e+02 Score=20.87 Aligned_cols=24 Identities=8% Similarity=0.020 Sum_probs=20.0
Q ss_pred HHHHHHHHHhcCCcEEEEeccCCc
Q 030516 106 RNILCEAVEKHHASILVVGSHGYG 129 (176)
Q Consensus 106 ~~~I~~~a~~~~~DlIV~Gs~g~~ 129 (176)
.+.+.+..++.++|+||+..-++-
T Consensus 68 ~~~~~~~l~~~~~Dliv~a~y~~i 91 (209)
T 1meo_A 68 DSAIDLVLEEFSIDIVCLAGFMRI 91 (209)
T ss_dssp HHHHHHHHHHTTCCEEEEESCCSC
T ss_pred hHHHHHHHHhcCCCEEEEcchhhh
Confidence 367889999999999999987653
No 122
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=25.06 E-value=1.8e+02 Score=20.25 Aligned_cols=80 Identities=9% Similarity=0.114 Sum_probs=44.2
Q ss_pred HHHHHHhhhcCCcceEEEEEc--CChHHHHHHHHHhcCCcEEEEeccCCc----ccchhcccc---------------cc
Q 030516 82 EEAKEICSSKSVHDFVVEVVE--GDARNILCEAVEKHHASILVVGSHGYG----AIKRYKSTI---------------SC 140 (176)
Q Consensus 82 ~~~~~~~~~~~~~~v~~~v~~--G~~~~~I~~~a~~~~~DlIV~Gs~g~~----~l~~~l~gv---------------s~ 140 (176)
+..++.+.+.+ .++++.... |...+.|-+.. .++|-||+-.-+-+ ++...+.++ .+
T Consensus 39 ~~l~~~a~~~g-~~~~~~QSN~EgeLId~Ih~a~--~~~dgiiINpgA~THtSvAlrDAl~~~~~P~VEVHiSNi~aRE~ 115 (153)
T 3lwz_A 39 SQLEIQAQGMD-VALSHLQSNAEHALIDSIHQAR--GNTDFILINPAAFTHTSVALRDALLGVQIPFIEIHLSNVHAREP 115 (153)
T ss_dssp HHHHHHHHHTT-EEEEEEECSCHHHHHHHHHHHT--TTCSEEEEECGGGGGTCHHHHHHHHHHTCCEEEEESSCGGGSCG
T ss_pred HHHHHHHHHcC-CEEEEEecCCHHHHHHHHHHhh--hcCceEEEccccceechHHHHHHHHhcCCCEEEEEcCCccccch
Confidence 33344555555 234443332 33444444432 46999999865543 333333221 13
Q ss_pred hhhhheeeccccccccccCcccce
Q 030516 141 FIWYLIFSRVELGMVNCFGYYSYL 164 (176)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~ 164 (176)
|--...+|.+-+.+|--||..+|.
T Consensus 116 FRh~S~~s~~a~GvI~G~G~~gY~ 139 (153)
T 3lwz_A 116 FRHHSYLSDIAVGVICGLGADGYN 139 (153)
T ss_dssp GGGCCSSGGGSSEEEESSTTHHHH
T ss_pred hhhcccccccceEEEEecChhHHH
Confidence 445566777778888888888874
No 123
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1
Probab=24.83 E-value=1.5e+02 Score=20.62 Aligned_cols=81 Identities=11% Similarity=0.236 Sum_probs=44.8
Q ss_pred HHHHHHHhhhcCCcceEEEEEcCChHHHHHHHHHh--cCCcEEEEeccCCc----ccchhcccc---------------c
Q 030516 81 VEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEK--HHASILVVGSHGYG----AIKRYKSTI---------------S 139 (176)
Q Consensus 81 l~~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~--~~~DlIV~Gs~g~~----~l~~~l~gv---------------s 139 (176)
.+.+++.+.+.+. ++++ .+.+-.-+|++...+ .++|-||+-.-+-+ ++...+.++ .
T Consensus 32 ~~~l~~~a~~~g~-~l~~--~QSN~EGeLId~Ih~a~~~~dgiIINpgA~THtSvAlrDAl~~v~~P~VEVHiSNi~aRE 108 (154)
T 1uqr_A 32 EQHLQQSAQAQGY-ELDY--FQANGEESLINRIHQAFQNTDFIIINPGAFTHTSVAIRDALLAVSIPFIEVHLSNVHARE 108 (154)
T ss_dssp HHHHHHHHHHTTC-EEEE--EECSSHHHHHHHHHHTTTTCCEEEEECTTHHHHCHHHHHHHHHHTCCEEEEESSCGGGSC
T ss_pred HHHHHHHHHHCCC-EEEE--EeeCCHHHHHHHHHHhhhcCcEEEECcchhccchHHHHHHHHhCCCCEEEEEecCccccc
Confidence 3334455555553 3444 443333444444333 26899999865543 223332221 1
Q ss_pred chhhhheeeccccccccccCcccce
Q 030516 140 CFIWYLIFSRVELGMVNCFGYYSYL 164 (176)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (176)
+|--...+|.+-+.+|--||..+|.
T Consensus 109 ~FRh~S~~s~~a~GvI~G~G~~gY~ 133 (154)
T 1uqr_A 109 PFRHHSYLSDVAKGVICGLGAKGYD 133 (154)
T ss_dssp GGGSCCSSGGGSSEEEESSTTHHHH
T ss_pred ccccccccCcceeEEEEecCHHHHH
Confidence 3445566788888888888888884
No 124
>2qs7_A Uncharacterized protein; putative oxidoreductase of the DSRE/DSRF-like family, struct genomics, joint center for structural genomics; HET: MSE EPE; 2.09A {Sulfolobus solfataricus P2}
Probab=24.59 E-value=1.6e+02 Score=19.68 Aligned_cols=42 Identities=7% Similarity=0.024 Sum_probs=24.7
Q ss_pred CCCCCCCEEEEEecC-C-HhHHHHHHHHHHHhcccCCCCCCcEEEEEEEe
Q 030516 1 MATAETQTMVVGIDD-S-EQSTYALQWTLDHFFANSTVNPPFKLVIVHAR 48 (176)
Q Consensus 1 m~~~~~~~ILVavD~-s-~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~ 48 (176)
|+.++.+++++-+.. + +....++..|...+.. |.+|+++...
T Consensus 2 ~~~~m~~kl~II~~sg~~d~~~~a~~lA~~Aaa~------g~eV~iF~t~ 45 (144)
T 2qs7_A 2 MAEEKKKKLSIIVFSGTIDKLMPVGILTSGAAAS------GYEVNLFFTF 45 (144)
T ss_dssp -----CCEEEEEECCCSHHHHHHHHHHHHHHHHT------TCEEEEEECH
T ss_pred ccccccCCEEEEEEcCCHHHHHHHHHHHHHHHHc------CCcEEEEEeh
Confidence 444445666665543 3 4456788888776665 6799988764
No 125
>1f86_A Transthyretin Thr119Met variant; protein stability, X-RAY amyloidogenesis, transport protein; HET: T44; 1.10A {Homo sapiens} SCOP: b.3.4.1 PDB: 1fhn_A 1bze_A 1fh2_A 1bzd_A 3fcb_A* 3fc8_A* 3cfm_A 3cfn_A* 3cfq_A* 3cft_A* 3m1o_A* 1bmz_A 1bm7_A 1e3f_A* 1e5a_A* 1e4h_A 1ict_A* 1tt6_A* 1tta_A 1tyr_A* ...
Probab=24.48 E-value=15 Score=24.49 Aligned_cols=15 Identities=7% Similarity=0.188 Sum_probs=11.7
Q ss_pred ccccccccccCcccce
Q 030516 149 RVELGMVNCFGYYSYL 164 (176)
Q Consensus 149 ~~~~~~~~~~~~~~~~ 164 (176)
-+|++ +.+||||.|.
T Consensus 97 HVPLL-lSP~~YST~~ 111 (115)
T 1f86_A 97 TIAAL-LSPYSYSTMA 111 (115)
T ss_dssp EEEEE-EETTEEEEEE
T ss_pred EEeEE-ecCCcceEEE
Confidence 37887 7789998875
No 126
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=24.24 E-value=2.5e+02 Score=21.66 Aligned_cols=25 Identities=16% Similarity=0.075 Sum_probs=21.0
Q ss_pred HHHHHHHHHhcCCcEEEEeccCCcc
Q 030516 106 RNILCEAVEKHHASILVVGSHGYGA 130 (176)
Q Consensus 106 ~~~I~~~a~~~~~DlIV~Gs~g~~~ 130 (176)
.+.+++..++.++|+||+..-++-.
T Consensus 170 ~~~~~~~l~~~~~DliVlagym~IL 194 (302)
T 3o1l_A 170 FAEVSRLVGHHQADVVVLARYMQIL 194 (302)
T ss_dssp HHHHHHHHHHTTCSEEEESSCCSCC
T ss_pred HHHHHHHHHHhCCCEEEHhHhhhhc
Confidence 4679999999999999999877643
No 127
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=24.14 E-value=26 Score=25.63 Aligned_cols=94 Identities=17% Similarity=0.057 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCC-cccc---------hhc--ccccchh
Q 030516 75 KIAARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGY-GAIK---------RYK--STISCFI 142 (176)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~-~~l~---------~~l--~gvs~~~ 142 (176)
+..++.++-+.+.+.+.+...+.+--..|..+....+.. .+..+|++..+.- ..-. +.| .|+.=+.
T Consensus 26 eNT~~tl~la~era~e~~Ik~iVVAS~sG~TA~k~~e~~--~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G~~V~t 103 (201)
T 1vp8_A 26 ENTEETLRLAVERAKELGIKHLVVASSYGDTAMKALEMA--EGLEVVVVTYHTGFVREGENTMPPEVEEELRKRGAKIVR 103 (201)
T ss_dssp GGHHHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHHHC--TTCEEEEEECCTTSSSTTCCSSCHHHHHHHHHTTCEEEE
T ss_pred ccHHHHHHHHHHHHHHcCCCEEEEEeCCChHHHHHHHHh--cCCeEEEEeCcCCCCCCCCCcCCHHHHHHHHhCCCEEEE
Confidence 334455666666666666444445455687777777766 3688998885432 1111 111 2444455
Q ss_pred hhheeeccccccccccCcccceeeeeee
Q 030516 143 WYLIFSRVELGMVNCFGYYSYLSIIKRT 170 (176)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (176)
.-.+||.++-.+.+-||-+....||..|
T Consensus 104 ~tH~lsgveR~is~kfGG~~p~eiiA~t 131 (201)
T 1vp8_A 104 QSHILSGLERSISRKLGGVSRTEAIAEA 131 (201)
T ss_dssp CCCTTTTTHHHHHHHTCCCCHHHHHHHH
T ss_pred EeccccchhHHHHHhcCCCCHHHHHHHH
Confidence 5667777777777788776666665443
No 128
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=24.13 E-value=95 Score=23.15 Aligned_cols=36 Identities=0% Similarity=-0.189 Sum_probs=28.0
Q ss_pred CCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEE
Q 030516 6 TQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHA 47 (176)
Q Consensus 6 ~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv 47 (176)
+.+++|++++..+|...+..+.++... +.++.++|+
T Consensus 41 ~~~v~va~SGGkDS~vLL~ll~~~~~~------~~~i~vv~i 76 (261)
T 2oq2_A 41 FPHLFQTTAFGLTGLVTIDMLSKLSEK------YYMPELLFI 76 (261)
T ss_dssp CSSEEEECCCCHHHHHHHHHHHHHTTT------SCCCEEEEE
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhCcc------CCCeeEEEe
Confidence 568999999999999999888776652 225677777
No 129
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=23.87 E-value=61 Score=21.99 Aligned_cols=20 Identities=20% Similarity=0.393 Sum_probs=18.9
Q ss_pred hHHHHHHHHHhcCCcEEEEe
Q 030516 105 ARNILCEAVEKHHASILVVG 124 (176)
Q Consensus 105 ~~~~I~~~a~~~~~DlIV~G 124 (176)
..+.|.+++++++++.||+|
T Consensus 41 ~~~~l~~li~e~~v~~iVvG 60 (138)
T 1nu0_A 41 DWNIIERLLKEWQPDEIIVG 60 (138)
T ss_dssp CHHHHHHHHHHHCCSEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEe
Confidence 57899999999999999999
No 130
>4f2d_A L-arabinose isomerase; structural genomics, PSI-1, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: MSE RB0; 2.30A {Escherichia coli} PDB: 2ajt_A 2hxg_A
Probab=23.57 E-value=88 Score=26.11 Aligned_cols=79 Identities=15% Similarity=0.167 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcCCcceEEE--EEcCChHHHHHHHH-HhcCCcEEEEeccCCcccchhcccccchhhhh
Q 030516 69 VDSDFKKIAARVVEEAKEICSSKSVHDFVVE--VVEGDARNILCEAV-EKHHASILVVGSHGYGAIKRYKSTISCFIWYL 145 (176)
Q Consensus 69 ~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--v~~G~~~~~I~~~a-~~~~~DlIV~Gs~g~~~l~~~l~gvs~~~~~~ 145 (176)
..++..+++++.++.+.+. ...+. ++... +..-+....+++.+ ++.++|.||+=.+..+.-+-++.+..
T Consensus 23 ~~~~v~~~~~~~~~~l~~~-~~l~~-~vv~~g~v~t~~~~~~~~~~~n~~~~vdgvi~~~~TFs~a~~~i~~l~------ 94 (500)
T 4f2d_A 23 TLRQVTQHAEHVVNALNTE-AKLPC-KLVLKPLGTTPDEITAICRDANYDDRCAGLVVWLHTFSPAKMWINGLT------ 94 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TCCSS-EEEECCCBCSHHHHHHHHHHHHHCTTEEEEEEECCSCCCTHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHhccc-cCCCe-EEEecCcCCCHHHHHHHHHHhccccCCcEEEEeCCcCccHHHHHHHHH------
Confidence 3455555666666655433 11221 22221 11122455666677 67799999999888887776654433
Q ss_pred eeecccccccc
Q 030516 146 IFSRVELGMVN 156 (176)
Q Consensus 146 ~~~~~~~~~~~ 156 (176)
..++||+..+
T Consensus 95 -~l~~PvL~~~ 104 (500)
T 4f2d_A 95 -MLNKPLLQFH 104 (500)
T ss_dssp -HCCSCEEEEE
T ss_pred -hcCCCEEEEe
Confidence 2578888765
No 131
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=22.99 E-value=1.6e+02 Score=20.61 Aligned_cols=45 Identities=9% Similarity=0.017 Sum_probs=27.8
Q ss_pred CCCCCCCEEEEEec-CCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecC
Q 030516 1 MATAETQTMVVGID-DSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPS 50 (176)
Q Consensus 1 m~~~~~~~ILVavD-~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~ 50 (176)
|+.....+||+.+. ....+..+.+.+++.+.. .+.++.++.+.+.
T Consensus 1 ~~~~~mmkilii~~S~~g~T~~la~~i~~~l~~-----~g~~v~~~~l~~~ 46 (211)
T 1ydg_A 1 MSLTAPVKLAIVFYSSTGTGYAMAQEAAEAGRA-----AGAEVRLLKVRET 46 (211)
T ss_dssp ----CCCEEEEEECCSSSHHHHHHHHHHHHHHH-----TTCEEEEEECCCC
T ss_pred CCcCCCCeEEEEEECCCChHHHHHHHHHHHHhc-----CCCEEEEEecccc
Confidence 45444567777764 334567778887777766 2678888887553
No 132
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=22.92 E-value=1.3e+02 Score=21.43 Aligned_cols=48 Identities=13% Similarity=0.110 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhhcCCcceEEEEE-cCChHHHHHHHHHhcCCcEEEEeccCC
Q 030516 78 ARVVEEAKEICSSKSVHDFVVEVV-EGDARNILCEAVEKHHASILVVGSHGY 128 (176)
Q Consensus 78 ~~~l~~~~~~~~~~~~~~v~~~v~-~G~~~~~I~~~a~~~~~DlIV~Gs~g~ 128 (176)
+..++.+.+.+.+.+ .+++..-. .++..+.+.+..+ .+|.||+++.--
T Consensus 33 ~~l~~~~~~~~~~~g-~~v~~~dL~~~~d~~~~~~~l~--~AD~iV~~~P~y 81 (204)
T 2amj_A 33 DTLTEVADGTLRDLG-HDVRIVRADSDYDVKAEVQNFL--WADVVIWQMPGW 81 (204)
T ss_dssp HHHHHHHHHHHHHTT-CEEEEEESSSCCCHHHHHHHHH--HCSEEEEEEECB
T ss_pred HHHHHHHHHHHHHcC-CEEEEEeCCccccHHHHHHHHH--hCCEEEEECCcc
Confidence 334444455554444 24554433 3445667777777 899999998653
No 133
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=22.78 E-value=1.2e+02 Score=22.57 Aligned_cols=31 Identities=13% Similarity=0.001 Sum_probs=24.5
Q ss_pred EEcCChHHHHHHHHHhcCCcEEEEeccCCcc
Q 030516 100 VVEGDARNILCEAVEKHHASILVVGSHGYGA 130 (176)
Q Consensus 100 v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~ 130 (176)
+...-|.+.+++.++++++|+|.+.......
T Consensus 157 LG~~vp~e~l~~~~~~~~~d~V~lS~l~~~~ 187 (258)
T 2i2x_B 157 LGRDVPAEEVLAAVQKEKPIMLTGTALMTTT 187 (258)
T ss_dssp EEEECCSHHHHHHHHHHCCSEEEEECCCTTT
T ss_pred CCCCCCHHHHHHHHHHcCCCEEEEEeeccCC
Confidence 3334589999999999999999998754433
No 134
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=22.63 E-value=58 Score=24.28 Aligned_cols=48 Identities=6% Similarity=0.016 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCCcEEEEeccCCcccchhcccccchhhhheeeccccccccccCcc
Q 030516 107 NILCEAVEKHHASILVVGSHGYGAIKRYKSTISCFIWYLIFSRVELGMVNCFGYY 161 (176)
Q Consensus 107 ~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~gvs~~~~~~~~~~~~~~~~~~~~~~ 161 (176)
..+++...+.++|+|.+|-..--.+...+--+.+ +.. .++|+.. |+||
T Consensus 23 ~~~~~~l~~~GaD~IelG~S~g~t~~~~~~~v~~-ir~---~~~Pivl---~~y~ 70 (234)
T 2f6u_A 23 DEIIKAVADSGTDAVMISGTQNVTYEKARTLIEK-VSQ---YGLPIVV---EPSD 70 (234)
T ss_dssp HHHHHHHHTTTCSEEEECCCTTCCHHHHHHHHHH-HTT---SCCCEEE---CCSS
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHHH-hcC---CCCCEEE---ecCC
Confidence 4567888889999999996322223333322222 222 3566553 6666
No 135
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=22.42 E-value=3.3e+02 Score=22.41 Aligned_cols=33 Identities=6% Similarity=0.017 Sum_probs=26.3
Q ss_pred CEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEe
Q 030516 7 QTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHAR 48 (176)
Q Consensus 7 ~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~ 48 (176)
.+++|++++.-+|.-++..+.+. . .+++.+|+-
T Consensus 210 ~kvvvalSGGvDSsvla~ll~~~-g--------~~v~av~vd 242 (503)
T 2ywb_A 210 DRVLLAVSGGVDSSTLALLLAKA-G--------VDHLAVFVD 242 (503)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHH-T--------CEEEEEEEE
T ss_pred ccEEEEecCCcchHHHHHHHHHc-C--------CeEEEEEEe
Confidence 68999999999998888776554 2 288899874
No 136
>2h4e_A Transthyretin; amyloid, sulfite, familial amyloidotic polyne transport protein; HET: CSU; 1.45A {Homo sapiens} SCOP: b.3.4.1 PDB: 2wqa_A* 1zcr_A 1zd6_A 2trh_A 1bz8_A 2qpf_A 1tfp_A
Probab=22.14 E-value=17 Score=24.59 Aligned_cols=16 Identities=6% Similarity=0.189 Sum_probs=12.7
Q ss_pred cccccccccCcccceee
Q 030516 150 VELGMVNCFGYYSYLSI 166 (176)
Q Consensus 150 ~~~~~~~~~~~~~~~~~ 166 (176)
+|++ +.+||||.|.-.
T Consensus 107 VPLL-lSP~gYST~~~v 122 (127)
T 2h4e_A 107 IAAL-LSPYSYSTTAVV 122 (127)
T ss_dssp EEEE-EETTEEEEEEEE
T ss_pred EeEE-ecCCcceeeEEe
Confidence 7888 788999988644
No 137
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=21.98 E-value=2.1e+02 Score=22.30 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=23.2
Q ss_pred HHHHHHHhhhcCCcceEEEEEcCCh----HHHHHHHHHhcCCcEEE-Eec
Q 030516 81 VEEAKEICSSKSVHDFVVEVVEGDA----RNILCEAVEKHHASILV-VGS 125 (176)
Q Consensus 81 l~~~~~~~~~~~~~~v~~~v~~G~~----~~~I~~~a~~~~~DlIV-~Gs 125 (176)
.+++.+.+.+.+. ++...+..|++ .+.+.+.++++++|+|| +|-
T Consensus 47 ~~~v~~~L~~~g~-~~~~~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGG 95 (370)
T 1jq5_A 47 GHTIVNELKKGNI-AAEEVVFSGEASRNEVERIANIARKAEAAIVIGVGG 95 (370)
T ss_dssp HHHHHHHHHTTTC-EEEEEECCSSCBHHHHHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHHHcCC-eEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4444445544442 34333444542 34566667777788777 543
No 138
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=21.62 E-value=2.7e+02 Score=21.18 Aligned_cols=28 Identities=7% Similarity=0.067 Sum_probs=22.0
Q ss_pred HHHHHHHHHhcCCcEEEEeccCCcccch
Q 030516 106 RNILCEAVEKHHASILVVGSHGYGAIKR 133 (176)
Q Consensus 106 ~~~I~~~a~~~~~DlIV~Gs~g~~~l~~ 133 (176)
.+.+++..++.++|+||+..-++-.-..
T Consensus 155 ~~~~~~~l~~~~~Dlivla~y~~il~~~ 182 (286)
T 3n0v_A 155 ERKVLQVIEETGAELVILARYMQVLSPE 182 (286)
T ss_dssp HHHHHHHHHHHTCSEEEESSCCSCCCHH
T ss_pred HHHHHHHHHhcCCCEEEecccccccCHH
Confidence 4578999999999999999887643333
No 139
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=21.57 E-value=2.7e+02 Score=21.23 Aligned_cols=91 Identities=7% Similarity=0.049 Sum_probs=52.9
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHHH
Q 030516 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEA 84 (176)
Q Consensus 5 ~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (176)
..++|.|-+.++..+..++-++.+.-.- ++++.+| +.+....
T Consensus 94 ~~~ri~vl~Sg~g~~l~~ll~~~~~g~l------~~~i~~V--isn~~~~------------------------------ 135 (292)
T 3lou_A 94 ARPKVLIMVSKLEHCLADLLFRWKMGEL------KMDIVGI--VSNHPDF------------------------------ 135 (292)
T ss_dssp SCCEEEEEECSCCHHHHHHHHHHHHTSS------CCEEEEE--EESSSTT------------------------------
T ss_pred CCCEEEEEEcCCCcCHHHHHHHHHcCCC------CcEEEEE--EeCcHHH------------------------------
Confidence 3568999999888877777666443222 4566555 3322210
Q ss_pred HHHhhhcCCcceEE-EEEcCC---hHHHHHHHHHhcCCcEEEEeccCCcccchh
Q 030516 85 KEICSSKSVHDFVV-EVVEGD---ARNILCEAVEKHHASILVVGSHGYGAIKRY 134 (176)
Q Consensus 85 ~~~~~~~~~~~v~~-~v~~G~---~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~ 134 (176)
...+.+++.. +.. .....+ -.+.+++..++.++|+||+..-++---..+
T Consensus 136 ~~~A~~~gIp-~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y~~il~~~~ 188 (292)
T 3lou_A 136 APLAAQHGLP-FRHFPITADTKAQQEAQWLDVFETSGAELVILARYMQVLSPEA 188 (292)
T ss_dssp HHHHHHTTCC-EEECCCCSSCHHHHHHHHHHHHHHHTCSEEEESSCCSCCCHHH
T ss_pred HHHHHHcCCC-EEEeCCCcCCHHHHHHHHHHHHHHhCCCEEEecCchhhCCHHH
Confidence 0124445532 322 111122 245799999999999999998876433333
No 140
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=21.34 E-value=2.8e+02 Score=21.17 Aligned_cols=35 Identities=11% Similarity=0.072 Sum_probs=27.0
Q ss_pred CEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEec
Q 030516 7 QTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (176)
Q Consensus 7 ~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~ 49 (176)
.+++|++++.-+|.-++..+.+... .+++.+|+-.
T Consensus 21 ~kvlvalSGGvDSsvla~ll~~~~g--------~~v~av~vd~ 55 (308)
T 2dpl_A 21 SKAIIALSGGVDSSTAAVLAHKAIG--------DRLHAVFVNT 55 (308)
T ss_dssp SCEEEECCSSHHHHHHHHHHHHHHG--------GGEEEEEEEC
T ss_pred CCEEEEEeChHHHHHHHHHHHHhhC--------CCEEEEEEcC
Confidence 6899999999999888877766533 2788888743
No 141
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=21.24 E-value=2.8e+02 Score=21.17 Aligned_cols=100 Identities=9% Similarity=0.077 Sum_probs=55.3
Q ss_pred CEEEEEecCCHhHHHHHHHHHHHhcccC-------------CCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHH
Q 030516 7 QTMVVGIDDSEQSTYALQWTLDHFFANS-------------TVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDF 73 (176)
Q Consensus 7 ~~ILVavD~s~~s~~al~~a~~la~~~~-------------~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (176)
.+|+|++++..+|.-++..+.+.....+ ....+.++.++|+-.....
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~~f-------------------- 113 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEETF-------------------- 113 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTTCC--------------------
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCCCC--------------------
Confidence 4799999999999998888776532100 0001235777777322111
Q ss_pred HHHHHHHHHHHHHHhhhcCCcceEEEEEc------CChHHHHHHHHHhc-CCcEEEEeccCCcccch
Q 030516 74 KKIAARVVEEAKEICSSKSVHDFVVEVVE------GDARNILCEAVEKH-HASILVVGSHGYGAIKR 133 (176)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~~~v~~~v~~------G~~~~~I~~~a~~~-~~DlIV~Gs~g~~~l~~ 133 (176)
....+..+++. ..++ +...+.. ....+++.++.+.. ..+.|++|.|.-....+
T Consensus 114 -pet~~fv~~~~---~~yg---l~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rrdds~~r 173 (306)
T 2wsi_A 114 -PTLENFVLETS---ERYC---LSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRHTDPFGE 173 (306)
T ss_dssp -HHHHHHHHHHH---HHTT---EEEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCCCSSSCC
T ss_pred -HHHHHHHHHHH---HHcC---CCEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEeccccccc
Confidence 11122222222 2333 2222222 23456777777764 68899999888755443
No 142
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=20.80 E-value=80 Score=24.40 Aligned_cols=53 Identities=11% Similarity=0.189 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCC------cccchhc
Q 030516 78 ARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGY------GAIKRYK 135 (176)
Q Consensus 78 ~~~l~~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~------~~l~~~l 135 (176)
++.++++++.+.+...+ +-..-|. ---.+++++-++|+||+-+.|+ +.+..++
T Consensus 14 ~~il~~l~~~i~~~~~i---ig~gaGt--GlsAk~~e~gGaDlii~ynsGrfR~~G~~slag~l 72 (286)
T 2p10_A 14 SELVDRFQKKIRAGEPI---IGGGAGT--GLSAKSEEAGDIDLIVIYNSGRYRMAGRGSLAGLL 72 (286)
T ss_dssp HHHHHHHHHHHHTTCCE---EEEEESS--HHHHHHHHHTTCSEEEECHHHHHHHTTCCGGGGGB
T ss_pred HHHHHHHHHHHhcCCce---EEEeccc--chhhHHHHhCCCCEEEEeccchhhhcCccchhhhc
Confidence 45677777777665322 2233344 2345788888999999987664 4455555
No 143
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=20.36 E-value=1.3e+02 Score=22.53 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=26.2
Q ss_pred HHHHHHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEecc
Q 030516 81 VEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSH 126 (176)
Q Consensus 81 l~~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~ 126 (176)
++++++.+.+.+ ..+...+-.|--.+ -+..+.+.++|.+|+|+.
T Consensus 182 I~~lr~~~~~~~-~~~~I~VDGGI~~~-ti~~~~~aGAD~~V~GSa 225 (246)
T 3inp_A 182 AKEISKWISSTD-RDILLEIDGGVNPY-NIAEIAVCGVNAFVAGSA 225 (246)
T ss_dssp HHHHHHHHHHHT-SCCEEEEESSCCTT-THHHHHTTTCCEEEESHH
T ss_pred HHHHHHHHHhcC-CCeeEEEECCcCHH-HHHHHHHcCCCEEEEehH
Confidence 444455554444 23556555554333 355566789999999963
No 144
>1oo2_A Transthyretin; retinol-binding protein, tetramer, transport protein; 1.56A {Sparus aurata} SCOP: b.3.4.1 PDB: 1sn2_A 1sn0_A 1sn5_A*
Probab=20.35 E-value=20 Score=23.99 Aligned_cols=16 Identities=19% Similarity=0.310 Sum_probs=12.3
Q ss_pred cccccccccCcccceee
Q 030516 150 VELGMVNCFGYYSYLSI 166 (176)
Q Consensus 150 ~~~~~~~~~~~~~~~~~ 166 (176)
+|++ +.+||||.|.-.
T Consensus 99 VPLL-lSP~~YST~~~v 114 (119)
T 1oo2_A 99 LALL-LSPFSYTTTAVV 114 (119)
T ss_dssp EEEE-EETTEEEEEEEE
T ss_pred EeEE-ecCCcceeeEEe
Confidence 7888 778999887643
No 145
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=20.29 E-value=94 Score=25.96 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=20.7
Q ss_pred CChHHHHHHHHHhcCCcEEEEeccCCcc
Q 030516 103 GDARNILCEAVEKHHASILVVGSHGYGA 130 (176)
Q Consensus 103 G~~~~~I~~~a~~~~~DlIV~Gs~g~~~ 130 (176)
|+..+.+++.++. ++.+|.+-+.|...
T Consensus 101 GdDi~~v~~~~~~-~~pVi~v~tpgf~g 127 (525)
T 3aek_B 101 QDDPNGISRALNL-PVPVVPLELPSYSR 127 (525)
T ss_dssp CCCHHHHHHHHTC-SSCEEECCCCTTTC
T ss_pred cccHHHHHHHhcC-CCCEEEEECCCcCC
Confidence 7777888888876 78888887777654
Done!