BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>030517
MLLRSSSTPILNSWIPHAKDSSPVPFTLTASSSPCDSLKSMTRTLSETDLRSLPLPKKKA
TSNVFNGLALEEKEDESETASFDGGWLGKEACEIGVLVGGGIYGGGGNMCGGGGGSDGGD
GDGRWGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCSKSFSFY

High Scoring Gene Products

Symbol, full name Information P value
AT5G20190 protein from Arabidopsis thaliana 3.5e-13
AT1G80130 protein from Arabidopsis thaliana 1.2e-09
AT4G32340 protein from Arabidopsis thaliana 4.9e-05

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030517
        (176 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2149314 - symbol:AT5G20190 "AT5G20190" species...   117  3.5e-13   2
TAIR|locus:2016229 - symbol:AT1G80130 species:3702 "Arabi...    99  1.2e-09   2
TAIR|locus:2127781 - symbol:AT4G32340 "AT4G32340" species...   106  4.9e-05   1


>TAIR|locus:2149314 [details] [associations]
            symbol:AT5G20190 "AT5G20190" species:3702 "Arabidopsis
            thaliana" [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] InterPro:IPR011990 InterPro:IPR013026
            PROSITE:PS50293 EMBL:CP002688 Gene3D:1.25.40.10 IPI:IPI00528919
            RefSeq:NP_197519.1 UniGene:At.31218 ProteinModelPortal:F4K464
            SMR:F4K464 PRIDE:F4K464 EnsemblPlants:AT5G20190.1 GeneID:832142
            KEGG:ath:AT5G20190 OMA:HEEELEH PhylomeDB:F4K464 Uniprot:F4K464
        Length = 290

 Score = 117 (46.2 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
 Identities = 21/38 (55%), Positives = 32/38 (84%)

Query:   129 DPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEV 166
             D  + G+++TD++Y+KMI+A+P N + LSNYA+FLKEV
Sbjct:   147 DGGDGGDDNTDVHYRKMIEANPGNGIFLSNYAKFLKEV 184

 Score = 80 (33.2 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
 Identities = 32/86 (37%), Positives = 40/86 (46%)

Query:    27 TLTASSSPC-----------DSLKSMTRTLSETDLRSLPLPKKKATSNVFNGLALEEKED 75
             TL+ASSS C           DS + M RT S++DLR L    K   S   +G AL E  D
Sbjct:    41 TLSASSSSCCYSPMSVHSSDDSSRRMKRTASDSDLRHLT-STKPPVSKFLSGGALMEDVD 99

Query:    76 ES------ETASFDG-GWLGKEACEI 94
             E        T+S+DG  W   E  E+
Sbjct:   100 EGIGFGLIRTSSYDGISWALDEDTEV 125

 Score = 65 (27.9 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
 Identities = 18/55 (32%), Positives = 26/55 (47%)

Query:     1 MLLRSSSTPILNSWIPHAKDSSPVPFTLTASSSPCDSLKSMTRTLSETDLRSLPL 55
             MLLRS+STP+LNS + H       P     S       +S+T + S +     P+
Sbjct:     1 MLLRSASTPLLNSLV-HVSSPRDSPIETVESVHQIQRHRSITLSASSSSCCYSPM 54


>TAIR|locus:2016229 [details] [associations]
            symbol:AT1G80130 species:3702 "Arabidopsis thaliana"
            [GO:0016020 "membrane" evidence=IDA] [GO:0006979 "response to
            oxidative stress" evidence=IMP] InterPro:IPR011990 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0006979 GO:GO:0016020
            Gene3D:1.25.40.10 EMBL:AC009322 EMBL:AY034991 EMBL:AY063018
            EMBL:AY087456 IPI:IPI00544333 PIR:H96832 RefSeq:NP_565230.1
            UniGene:At.23459 ProteinModelPortal:Q9SSC6 SMR:Q9SSC6 PRIDE:Q9SSC6
            EnsemblPlants:AT1G80130.1 GeneID:844353 KEGG:ath:AT1G80130
            TAIR:At1g80130 eggNOG:NOG245836 HOGENOM:HOG000029161
            InParanoid:Q9SSC6 OMA:CERAILG PhylomeDB:Q9SSC6
            ProtClustDB:CLSN2917505 ArrayExpress:Q9SSC6 Genevestigator:Q9SSC6
            Uniprot:Q9SSC6
        Length = 305

 Score = 99 (39.9 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
 Identities = 18/31 (58%), Positives = 25/31 (80%)

Query:   136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEV 166
             ++TD YY++MI ++P N LL  NYA+FLKEV
Sbjct:   163 DATDTYYREMIDSNPGNSLLTGNYAKFLKEV 193

 Score = 87 (35.7 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
 Identities = 18/27 (66%), Positives = 23/27 (85%)

Query:     1 MLLRSSSTPILNSWIP-H-AKDSSPVP 25
             MLLRS+S PILNSW+P H +++SSP P
Sbjct:     1 MLLRSTSAPILNSWLPQHCSRESSPEP 27

 Score = 55 (24.4 bits), Expect = 0.00023, Sum P(2) = 0.00023
 Identities = 10/37 (27%), Positives = 21/37 (56%)

Query:   131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEVN 167
             N+        YY++ ++  P +  + ++YARFL +V+
Sbjct:   228 NHQDRQRAHSYYKQAVKMSPEDCYVQASYARFLWDVD 264


>TAIR|locus:2127781 [details] [associations]
            symbol:AT4G32340 "AT4G32340" species:3702 "Arabidopsis
            thaliana" [GO:0009965 "leaf morphogenesis" evidence=RCA]
            [GO:0030154 "cell differentiation" evidence=RCA] [GO:0045893
            "positive regulation of transcription, DNA-dependent" evidence=RCA]
            InterPro:IPR011990 EMBL:CP002687 GenomeReviews:CT486007_GR
            Gene3D:1.25.40.10 EMBL:AL161581 EMBL:AL034567 EMBL:AL021811
            EMBL:AY087384 EMBL:AY150386 IPI:IPI00532347 PIR:T05344
            RefSeq:NP_194960.1 UniGene:At.2033 ProteinModelPortal:O49358
            SMR:O49358 STRING:O49358 PRIDE:O49358 EnsemblPlants:AT4G32340.1
            GeneID:829368 KEGG:ath:AT4G32340 TAIR:At4g32340 eggNOG:NOG269023
            HOGENOM:HOG000114717 InParanoid:O49358 OMA:YHEETAS PhylomeDB:O49358
            ProtClustDB:CLSN2916166 Genevestigator:O49358 Uniprot:O49358
        Length = 238

 Score = 106 (42.4 bits), Expect = 4.9e-05, P = 4.9e-05
 Identities = 22/33 (66%), Positives = 25/33 (75%)

Query:   134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEV 166
             G  S D YY++MIQ  P + LLLSNYARFLKEV
Sbjct:   106 GGGSVDGYYEEMIQRYPGDTLLLSNYARFLKEV 138


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.128   0.383    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      176       148   0.00068  104 3  11 23  0.39    32
                                                     30  0.39    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  580 (62 KB)
  Total size of DFA:  147 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.63u 0.09s 14.72t   Elapsed:  00:00:00
  Total cpu time:  14.63u 0.09s 14.72t   Elapsed:  00:00:00
  Start:  Sat May 11 04:07:11 2013   End:  Sat May 11 04:07:11 2013

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