Query 030517
Match_columns 176
No_of_seqs 95 out of 97
Neff 3.2
Searched_HMMs 29240
Date Tue Mar 26 00:23:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030517.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030517hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ga2_A E3 SUMO-protein ligase 90.0 0.14 4.6E-06 36.5 2.0 37 135-171 81-117 (150)
2 4gcn_A Protein STI-1; structur 89.5 0.22 7.5E-06 34.5 2.7 35 135-170 24-58 (127)
3 3u64_A Protein TP_0956; tetrat 88.9 0.092 3.1E-06 45.8 0.4 38 135-172 220-258 (301)
4 1na3_A Designed protein CTPR2; 88.3 0.25 8.7E-06 30.3 2.1 31 135-165 25-55 (91)
5 2l6j_A TPR repeat-containing p 88.0 0.35 1.2E-05 30.6 2.7 31 135-165 20-50 (111)
6 2kat_A Uncharacterized protein 87.6 0.42 1.4E-05 31.5 2.9 30 136-165 36-65 (115)
7 3k9i_A BH0479 protein; putativ 87.3 0.49 1.7E-05 31.6 3.2 32 135-166 43-74 (117)
8 2e2e_A Formate-dependent nitri 86.1 0.34 1.2E-05 33.9 2.0 36 135-170 60-95 (177)
9 2v5f_A Prolyl 4-hydroxylase su 85.8 0.89 3E-05 30.9 3.9 35 135-169 62-96 (104)
10 4ga2_A E3 SUMO-protein ligase 85.7 0.38 1.3E-05 34.1 2.1 36 135-171 47-82 (150)
11 4gco_A Protein STI-1; structur 85.3 0.54 1.9E-05 32.6 2.7 31 135-165 29-59 (126)
12 2xcb_A PCRH, regulatory protei 84.6 0.5 1.7E-05 32.6 2.2 31 135-165 68-98 (142)
13 2ond_A Cleavage stimulation fa 84.5 0.26 8.8E-06 38.5 0.8 36 135-171 185-220 (308)
14 2kc7_A BFR218_protein; tetratr 84.4 0.84 2.9E-05 28.9 3.1 31 135-165 16-47 (99)
15 3upv_A Heat shock protein STI1 84.2 0.68 2.3E-05 30.7 2.7 31 135-165 20-50 (126)
16 1na3_A Designed protein CTPR2; 84.2 0.97 3.3E-05 27.6 3.2 31 135-165 59-89 (91)
17 3vtx_A MAMA; tetratricopeptide 83.2 0.89 3E-05 31.8 3.0 31 135-165 21-51 (184)
18 3ma5_A Tetratricopeptide repea 83.0 0.84 2.9E-05 30.1 2.7 36 135-171 23-58 (100)
19 2kat_A Uncharacterized protein 82.6 0.7 2.4E-05 30.3 2.2 34 137-171 3-36 (115)
20 3sz7_A HSC70 cochaperone (SGT) 81.9 0.69 2.4E-05 32.3 2.1 30 136-165 62-91 (164)
21 1elw_A TPR1-domain of HOP; HOP 81.9 1.3 4.4E-05 27.5 3.2 31 135-165 20-50 (118)
22 3sz7_A HSC70 cochaperone (SGT) 81.7 0.89 3.1E-05 31.7 2.6 36 135-171 27-62 (164)
23 2kck_A TPR repeat; tetratricop 81.7 1.1 3.7E-05 27.7 2.7 31 135-165 22-52 (112)
24 2kc7_A BFR218_protein; tetratr 81.7 1.2 4.2E-05 28.1 3.1 32 135-166 51-84 (99)
25 2xcb_A PCRH, regulatory protei 81.4 0.75 2.6E-05 31.7 2.1 36 135-171 34-69 (142)
26 3vtx_A MAMA; tetratricopeptide 81.4 0.75 2.6E-05 32.1 2.1 37 135-172 123-159 (184)
27 4gco_A Protein STI-1; structur 80.9 0.57 1.9E-05 32.5 1.3 29 135-163 97-125 (126)
28 2ond_A Cleavage stimulation fa 80.8 1.1 3.6E-05 35.0 3.0 31 136-166 33-63 (308)
29 3q49_B STIP1 homology and U bo 80.7 1.1 3.8E-05 29.5 2.7 31 135-165 25-55 (137)
30 3gyz_A Chaperone protein IPGC; 80.6 0.79 2.7E-05 33.7 2.1 31 135-165 52-82 (151)
31 2vgx_A Chaperone SYCD; alterna 80.4 0.85 2.9E-05 32.4 2.1 31 135-165 71-101 (148)
32 2r5s_A Uncharacterized protein 80.2 1.3 4.5E-05 31.4 3.1 29 137-165 92-120 (176)
33 2vyi_A SGTA protein; chaperone 79.8 1.7 5.8E-05 27.4 3.2 31 135-165 96-126 (131)
34 2pl2_A Hypothetical conserved 78.9 0.81 2.8E-05 34.0 1.7 36 135-171 167-202 (217)
35 1elr_A TPR2A-domain of HOP; HO 78.9 1.8 6.3E-05 27.3 3.2 36 135-171 20-55 (131)
36 3mkr_A Coatomer subunit epsilo 78.8 1.2 4.1E-05 35.2 2.8 34 135-168 216-249 (291)
37 3gyz_A Chaperone protein IPGC; 78.7 1.2 4.3E-05 32.6 2.6 31 135-165 86-116 (151)
38 2vyi_A SGTA protein; chaperone 77.6 1.7 5.7E-05 27.4 2.7 30 136-165 29-58 (131)
39 2lni_A Stress-induced-phosphop 77.0 1.7 5.9E-05 27.8 2.7 31 135-165 66-96 (133)
40 3urz_A Uncharacterized protein 77.0 1.8 6E-05 31.9 3.0 31 135-165 104-134 (208)
41 1elw_A TPR1-domain of HOP; HOP 76.7 2.7 9.2E-05 26.0 3.4 31 135-165 54-84 (118)
42 2e2e_A Formate-dependent nitri 75.5 1.6 5.6E-05 30.4 2.4 35 136-171 98-132 (177)
43 3urz_A Uncharacterized protein 75.3 2.2 7.6E-05 31.4 3.2 35 135-170 70-104 (208)
44 3upv_A Heat shock protein STI1 75.0 2 7E-05 28.3 2.7 31 135-165 54-84 (126)
45 2br9_A 14-3-3E, 14-3-3 protein 74.9 1.3 4.6E-05 36.9 2.1 38 136-173 147-192 (234)
46 1hxi_A PEX5, peroxisome target 74.9 3.8 0.00013 27.9 4.1 31 135-165 67-97 (121)
47 1na0_A Designed protein CTPR3; 74.6 2.7 9.2E-05 26.2 3.0 31 135-165 93-123 (125)
48 3q49_B STIP1 homology and U bo 74.5 2.1 7.3E-05 28.0 2.7 31 135-165 59-89 (137)
49 2ooe_A Cleavage stimulation fa 74.4 2.1 7.1E-05 36.0 3.1 30 137-166 256-285 (530)
50 2vgx_A Chaperone SYCD; alterna 74.2 2 7E-05 30.4 2.7 31 135-165 37-67 (148)
51 2ooe_A Cleavage stimulation fa 74.0 0.75 2.6E-05 38.6 0.4 31 135-165 407-437 (530)
52 2dba_A Smooth muscle cell asso 73.9 3.1 0.00011 27.2 3.3 32 135-166 81-112 (148)
53 3qou_A Protein YBBN; thioredox 72.5 1.7 5.8E-05 34.0 2.0 35 135-170 133-167 (287)
54 2lni_A Stress-induced-phosphop 72.4 2.3 7.8E-05 27.2 2.3 31 135-165 100-130 (133)
55 2kck_A TPR repeat; tetratricop 72.4 1.4 4.9E-05 27.2 1.3 31 135-165 56-88 (112)
56 1na0_A Designed protein CTPR3; 71.4 3 0.0001 26.0 2.7 31 135-165 59-89 (125)
57 2fo7_A Synthetic consensus TPR 70.1 1.9 6.6E-05 26.9 1.6 31 135-165 85-115 (136)
58 2fbn_A 70 kDa peptidylprolyl i 70.1 3.7 0.00013 29.4 3.3 33 135-167 138-170 (198)
59 3iqu_A 14-3-3 protein sigma; s 69.5 2.1 7.3E-05 35.9 2.1 38 136-173 150-195 (236)
60 3as5_A MAMA; tetratricopeptide 68.8 2.6 9E-05 28.1 2.1 30 136-165 127-156 (186)
61 1hxi_A PEX5, peroxisome target 68.8 3.2 0.00011 28.3 2.6 31 135-165 33-63 (121)
62 1a17_A Serine/threonine protei 68.7 4.9 0.00017 26.7 3.4 31 135-165 63-93 (166)
63 1o9d_A 14-3-3-like protein C; 68.0 2.4 8.1E-05 36.1 2.1 38 136-173 152-197 (260)
64 2r5s_A Uncharacterized protein 67.9 0.59 2E-05 33.3 -1.4 31 135-165 22-52 (176)
65 1a17_A Serine/threonine protei 67.9 3.6 0.00012 27.4 2.6 31 135-165 29-59 (166)
66 4g1t_A Interferon-induced prot 67.8 4.3 0.00015 32.4 3.5 32 135-166 154-185 (472)
67 1xnf_A Lipoprotein NLPI; TPR, 67.7 2.8 9.6E-05 30.3 2.2 35 135-170 93-127 (275)
68 2pl2_A Hypothetical conserved 67.7 3.6 0.00012 30.4 2.9 31 135-165 100-130 (217)
69 2fo7_A Synthetic consensus TPR 67.6 7.1 0.00024 24.2 3.8 31 135-165 17-47 (136)
70 2npm_A 14-3-3 domain containin 67.3 2.5 8.5E-05 36.0 2.1 38 136-173 173-217 (260)
71 2xev_A YBGF; tetratricopeptide 67.2 3 0.0001 27.0 2.0 31 135-165 55-88 (129)
72 3uzd_A 14-3-3 protein gamma; s 67.1 2.5 8.7E-05 35.8 2.1 38 136-173 148-193 (248)
73 1zu2_A Mitochondrial import re 67.0 3.4 0.00012 32.2 2.7 24 135-158 107-130 (158)
74 2q7f_A YRRB protein; TPR, prot 66.8 5.4 0.00018 28.2 3.5 31 135-165 141-171 (243)
75 2uy1_A Cleavage stimulation fa 66.7 3.2 0.00011 36.2 2.7 36 136-172 196-231 (493)
76 3fp2_A TPR repeat-containing p 66.7 3.8 0.00013 33.0 3.0 35 135-170 41-75 (537)
77 3k9i_A BH0479 protein; putativ 66.3 3.9 0.00013 27.0 2.6 38 135-173 77-114 (117)
78 2c2l_A CHIP, carboxy terminus 66.1 3.6 0.00012 32.1 2.7 31 135-165 20-50 (281)
79 4eqf_A PEX5-related protein; a 65.9 3.7 0.00013 31.6 2.7 31 135-165 229-259 (365)
80 1wao_1 Serine/threonine protei 65.4 3.8 0.00013 35.2 2.9 32 134-165 21-52 (477)
81 3as5_A MAMA; tetratricopeptide 64.9 5.8 0.0002 26.4 3.2 31 135-165 58-88 (186)
82 3bee_A Putative YFRE protein; 64.7 3.7 0.00013 28.1 2.3 38 135-173 25-62 (93)
83 1hh8_A P67PHOX, NCF-2, neutrop 64.0 4.5 0.00016 28.5 2.7 35 135-170 53-87 (213)
84 3ieg_A DNAJ homolog subfamily 64.0 3.4 0.00012 30.7 2.1 35 135-170 288-322 (359)
85 1elr_A TPR2A-domain of HOP; HO 64.0 7.1 0.00024 24.5 3.3 34 135-169 95-128 (131)
86 2dba_A Smooth muscle cell asso 63.9 4.9 0.00017 26.2 2.6 29 135-163 115-143 (148)
87 1xnf_A Lipoprotein NLPI; TPR, 63.8 3.6 0.00012 29.7 2.1 36 135-171 59-94 (275)
88 2g0u_A Type III secretion syst 63.6 5.1 0.00017 29.8 2.9 31 135-165 29-62 (92)
89 2xev_A YBGF; tetratricopeptide 63.6 3.9 0.00013 26.4 2.1 31 135-165 18-51 (129)
90 3u4t_A TPR repeat-containing p 63.5 3.7 0.00013 29.9 2.1 36 135-171 90-125 (272)
91 3hym_B Cell division cycle pro 63.4 1.9 6.5E-05 31.9 0.6 31 135-165 252-282 (330)
92 3rkv_A Putative peptidylprolyl 63.1 4.8 0.00016 27.8 2.6 31 135-165 79-109 (162)
93 3ubw_A 14-3-3E, 14-3-3 protein 63.0 3.3 0.00011 35.4 2.1 38 136-173 173-218 (261)
94 2l6j_A TPR repeat-containing p 62.7 8.9 0.0003 23.9 3.6 33 135-167 54-92 (111)
95 4gyw_A UDP-N-acetylglucosamine 62.1 3.3 0.00011 38.4 2.1 31 135-165 25-55 (723)
96 2ho1_A Type 4 fimbrial biogene 61.8 4.1 0.00014 29.4 2.1 35 135-170 87-121 (252)
97 2q7f_A YRRB protein; TPR, prot 61.6 5.8 0.0002 28.1 2.9 31 135-165 107-137 (243)
98 1p5q_A FKBP52, FK506-binding p 61.4 3.8 0.00013 33.0 2.1 31 135-165 212-242 (336)
99 4i17_A Hypothetical protein; T 61.4 3 0.0001 30.2 1.3 30 136-165 59-88 (228)
100 3uq3_A Heat shock protein STI1 61.4 5.9 0.0002 28.1 2.9 31 135-165 155-185 (258)
101 2ho1_A Type 4 fimbrial biogene 61.1 6.7 0.00023 28.2 3.2 35 135-170 53-87 (252)
102 3rkv_A Putative peptidylprolyl 60.7 5.1 0.00017 27.7 2.4 32 135-166 113-145 (162)
103 4gyw_A UDP-N-acetylglucosamine 60.6 5.6 0.00019 36.9 3.3 31 135-165 127-157 (723)
104 4i17_A Hypothetical protein; T 60.1 7.1 0.00024 28.1 3.2 29 135-163 92-120 (228)
105 3uq3_A Heat shock protein STI1 60.0 4.3 0.00015 28.8 1.9 36 135-171 189-224 (258)
106 2ca5_A MXIH; transport protein 60.0 6.7 0.00023 28.9 3.0 22 144-165 35-56 (85)
107 4eqf_A PEX5-related protein; a 59.2 4.6 0.00016 31.1 2.1 37 134-171 192-230 (365)
108 3qou_A Protein YBBN; thioredox 59.1 8.6 0.0003 29.9 3.7 30 136-165 202-231 (287)
109 1w3b_A UDP-N-acetylglucosamine 57.9 7.9 0.00027 30.2 3.3 31 135-165 219-249 (388)
110 2h6f_A Protein farnesyltransfe 57.1 9.4 0.00032 32.1 3.8 30 136-165 183-212 (382)
111 2vq2_A PILW, putative fimbrial 57.0 8 0.00027 26.7 2.9 31 135-165 58-88 (225)
112 1p5q_A FKBP52, FK506-binding p 56.7 8.2 0.00028 31.1 3.3 34 135-168 246-279 (336)
113 3u4t_A TPR repeat-containing p 56.3 5.7 0.0002 28.8 2.1 36 135-171 19-54 (272)
114 2fbn_A 70 kDa peptidylprolyl i 56.2 9 0.00031 27.3 3.1 32 135-166 104-135 (198)
115 2vsy_A XCC0866; transferase, g 56.1 4.7 0.00016 34.2 1.8 31 135-165 39-69 (568)
116 4abn_A Tetratricopeptide repea 56.0 6.6 0.00022 33.2 2.7 37 135-172 118-155 (474)
117 2vq2_A PILW, putative fimbrial 55.7 9.7 0.00033 26.3 3.1 31 135-165 129-159 (225)
118 1ihg_A Cyclophilin 40; ppiase 55.4 8.7 0.0003 31.9 3.3 30 136-165 290-319 (370)
119 2if4_A ATFKBP42; FKBP-like, al 55.0 5.8 0.0002 32.0 2.2 31 135-165 246-276 (338)
120 2pzi_A Probable serine/threoni 54.9 7.1 0.00024 34.9 2.9 31 135-165 449-479 (681)
121 3hym_B Cell division cycle pro 54.9 9.9 0.00034 28.0 3.2 41 133-173 284-324 (330)
122 3efz_A 14-3-3 protein; 14-3-3, 54.6 3.4 0.00012 35.5 0.7 38 136-173 169-216 (268)
123 3ieg_A DNAJ homolog subfamily 54.1 8.3 0.00028 28.6 2.7 34 135-168 322-355 (359)
124 2h6f_A Protein farnesyltransfe 53.2 16 0.00054 30.8 4.6 37 135-172 148-184 (382)
125 2vsy_A XCC0866; transferase, g 52.2 6.5 0.00022 33.3 2.1 31 135-165 73-103 (568)
126 3cv0_A Peroxisome targeting si 51.9 7.4 0.00025 28.7 2.1 29 136-164 155-183 (327)
127 3mkr_A Coatomer subunit epsilo 51.9 12 0.00041 29.5 3.4 31 135-165 182-212 (291)
128 1ihg_A Cyclophilin 40; ppiase 51.0 6.5 0.00022 32.6 1.9 36 133-168 321-356 (370)
129 2c2l_A CHIP, carboxy terminus 51.0 5.3 0.00018 31.1 1.3 31 135-165 54-84 (281)
130 1fch_A Peroxisomal targeting s 50.9 7.7 0.00026 29.5 2.1 29 136-164 234-262 (368)
131 4e6h_A MRNA 3'-END-processing 49.0 14 0.00049 34.2 4.0 31 136-166 326-356 (679)
132 2o8p_A 14-3-3 domain containin 48.7 5 0.00017 33.6 0.8 39 135-173 141-187 (227)
133 3cv0_A Peroxisome targeting si 48.4 9 0.00031 28.2 2.1 31 135-165 188-218 (327)
134 1zu2_A Mitochondrial import re 48.0 20 0.00068 27.8 4.1 32 136-167 19-50 (158)
135 1kt0_A FKBP51, 51 kDa FK506-bi 47.8 8.3 0.00028 32.6 2.0 31 135-165 333-363 (457)
136 2y4t_A DNAJ homolog subfamily 47.3 13 0.00043 29.3 2.9 31 135-165 311-341 (450)
137 3fp2_A TPR repeat-containing p 47.2 9.5 0.00033 30.7 2.2 29 136-164 327-355 (537)
138 1fch_A Peroxisomal targeting s 46.1 16 0.00054 27.7 3.2 35 135-170 267-301 (368)
139 1wao_1 Serine/threonine protei 44.6 10 0.00035 32.5 2.1 31 135-165 56-86 (477)
140 2pzi_A Probable serine/threoni 44.4 9.5 0.00032 34.1 2.0 34 134-167 482-515 (681)
141 4abn_A Tetratricopeptide repea 44.2 16 0.00056 30.8 3.3 31 135-165 237-270 (474)
142 4g1t_A Interferon-induced prot 44.1 17 0.00059 28.9 3.3 31 136-166 192-222 (472)
143 2y4t_A DNAJ homolog subfamily 43.5 21 0.00071 28.0 3.6 34 135-168 345-378 (450)
144 1kt0_A FKBP51, 51 kDa FK506-bi 43.3 13 0.00044 31.4 2.6 33 135-167 367-399 (457)
145 1w3b_A UDP-N-acetylglucosamine 42.7 16 0.00056 28.3 2.9 28 136-163 356-383 (388)
146 1hh8_A P67PHOX, NCF-2, neutrop 39.6 16 0.00054 25.7 2.1 31 135-165 87-133 (213)
147 2if4_A ATFKBP42; FKBP-like, al 39.1 5.2 0.00018 32.4 -0.5 34 135-168 280-313 (338)
148 3qky_A Outer membrane assembly 38.2 18 0.0006 26.8 2.3 22 135-156 113-134 (261)
149 4ah2_B HLA class II histocompa 36.8 7.2 0.00025 31.5 -0.0 16 93-108 11-26 (229)
150 2gw1_A Mitochondrial precursor 36.5 23 0.00079 28.0 2.9 36 135-171 431-466 (514)
151 4a1s_A PINS, partner of inscut 36.2 18 0.00063 28.0 2.2 36 135-171 64-103 (411)
152 2xpi_A Anaphase-promoting comp 36.0 17 0.00057 29.9 2.0 35 135-170 532-566 (597)
153 2gw1_A Mitochondrial precursor 35.7 27 0.00091 27.6 3.1 36 135-171 286-321 (514)
154 2xpi_A Anaphase-promoting comp 35.3 20 0.00067 29.5 2.3 29 136-164 458-486 (597)
155 2i7u_A Four-alpha-helix bundle 33.8 6.7 0.00023 27.0 -0.6 15 91-105 20-34 (62)
156 2p58_B Putative type III secre 32.0 10 0.00035 27.4 0.1 25 136-160 27-54 (86)
157 2izy_A CAMP-dependent protein 28.6 82 0.0028 20.5 4.1 32 136-167 12-44 (54)
158 4e6h_A MRNA 3'-END-processing 28.5 24 0.0008 32.8 1.9 32 135-166 486-517 (679)
159 3edt_B KLC 2, kinesin light ch 27.9 13 0.00044 26.5 0.1 36 135-171 143-186 (283)
160 3qky_A Outer membrane assembly 27.1 26 0.0009 25.8 1.6 31 135-165 31-64 (261)
161 3rjv_A Putative SEL1 repeat pr 26.1 20 0.00069 26.4 0.8 38 135-173 145-187 (212)
162 3ro2_A PINS homolog, G-protein 23.7 64 0.0022 23.2 3.2 31 135-165 21-55 (338)
163 1qqe_A Vesicular transport pro 23.4 17 0.00057 28.1 -0.0 31 135-165 134-170 (292)
164 2izx_A CAMP-dependent protein 22.6 1.2E+02 0.0041 18.0 3.8 30 136-165 9-39 (41)
165 4aen_A HLA class II histocompa 22.5 18 0.00062 28.8 0.0 13 100-112 1-13 (207)
166 3sf4_A G-protein-signaling mod 22.4 43 0.0015 25.4 2.1 36 135-171 25-64 (406)
167 2kyg_A CAMP-dependent protein 21.3 1.2E+02 0.0042 19.1 3.8 30 136-165 17-47 (50)
168 2yhc_A BAMD, UPF0169 lipoprote 21.2 49 0.0017 24.2 2.1 18 136-153 21-38 (225)
169 1klx_A Cysteine rich protein B 21.0 27 0.00091 24.4 0.6 36 136-173 42-80 (138)
170 2uy1_A Cleavage stimulation fa 20.3 43 0.0015 29.0 1.9 32 135-166 336-367 (493)
171 3mv2_B Coatomer subunit epsilo 20.2 62 0.0021 27.4 2.9 23 137-159 271-293 (310)
No 1
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=90.04 E-value=0.14 Score=36.47 Aligned_cols=37 Identities=14% Similarity=0.246 Sum_probs=28.9
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcCc
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCSK 171 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~~ 171 (176)
.+.+..+|+++|+.+|+|+-.+-|.|..+....+..+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 117 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDG 117 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSS
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Confidence 4677888888888888888888888888877554433
No 2
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=89.47 E-value=0.22 Score=34.49 Aligned_cols=35 Identities=26% Similarity=0.240 Sum_probs=29.9
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcC
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCS 170 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~ 170 (176)
.+.+..+|+++|+.+|+|+.++.|-|..+.. .++.
T Consensus 24 ~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~-~~~~ 58 (127)
T 4gcn_A 24 FEKAHVHYDKAIELDPSNITFYNNKAAVYFE-EKKF 58 (127)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHhHHHHHHH-hhhH
Confidence 5778899999999999999999999988776 3443
No 3
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=88.87 E-value=0.092 Score=45.77 Aligned_cols=38 Identities=11% Similarity=-0.018 Sum_probs=32.4
Q ss_pred CCcHHHHHHHHHHhCCCC-chhhhhHHHHHHHHhhcCcc
Q 030517 135 NNSTDLYYQKMIQADPRN-PLLLSNYARFLKEVNFCSKS 172 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N-~LlL~NYAqFL~~V~~D~~r 172 (176)
.++++.+|+|+|+.||++ ....--||+||..-.+|.+.
T Consensus 220 ~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 220 MEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 689999999999999975 99999999999875565443
No 4
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=88.28 E-value=0.25 Score=30.29 Aligned_cols=31 Identities=26% Similarity=0.330 Sum_probs=24.8
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
.+.+..+|+++|+.+|.++..+.|.|..+..
T Consensus 25 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 55 (91)
T 1na3_A 25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYK 55 (91)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 4667788888888888888888888887765
No 5
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=87.97 E-value=0.35 Score=30.65 Aligned_cols=31 Identities=32% Similarity=0.410 Sum_probs=26.7
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
...+..+|+++|+.+|+|+.++.|.|.-+..
T Consensus 20 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 50 (111)
T 2l6j_A 20 YREAVHCYDQLITAQPQNPVGYSNKAMALIK 50 (111)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 4677889999999999999999999987765
No 6
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=87.59 E-value=0.42 Score=31.45 Aligned_cols=30 Identities=10% Similarity=0.118 Sum_probs=17.4
Q ss_pred CcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 136 NSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 136 ~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
+.+..+|+++|+.+|.++..+.|+|..+..
T Consensus 36 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 65 (115)
T 2kat_A 36 DAALPHLRAALDFDPTYSVAWKWLGKTLQG 65 (115)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 445555666666666666666566555544
No 7
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=87.29 E-value=0.49 Score=31.57 Aligned_cols=32 Identities=16% Similarity=0.164 Sum_probs=27.5
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEV 166 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V 166 (176)
.+.+..+|+++|+.+|+|+-++-|+|..+...
T Consensus 43 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 74 (117)
T 3k9i_A 43 YRKAEAVLANGVKQFPNHQALRVFYAMVLYNL 74 (117)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc
Confidence 46788899999999999999999999887763
No 8
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=86.10 E-value=0.34 Score=33.95 Aligned_cols=36 Identities=19% Similarity=0.122 Sum_probs=29.1
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcC
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCS 170 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~ 170 (176)
.+.+..+|+++++.+|+|+.++.++|..|+.-.++.
T Consensus 60 ~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 60 YSNSLLAYRQALQLRGENAELYAALATVLYYQASQH 95 (177)
T ss_dssp HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCc
Confidence 577888899999999999999999998866555554
No 9
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=85.80 E-value=0.89 Score=30.88 Aligned_cols=35 Identities=17% Similarity=0.121 Sum_probs=28.8
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhc
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFC 169 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D 169 (176)
...+-.+|+++++.+|+|+-.+.|.+.|-+..+.+
T Consensus 62 ~~~A~~~~~~al~l~P~~~~~~~n~~~~~~~~~~~ 96 (104)
T 2v5f_A 62 LDKALLLTKKLLELDPEHQRANGNLKYFEYIMAKE 96 (104)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHhhHHHHHHHHHhc
Confidence 46778899999999999999999998666655443
No 10
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=85.75 E-value=0.38 Score=34.09 Aligned_cols=36 Identities=11% Similarity=0.089 Sum_probs=30.6
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcCc
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCSK 171 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~~ 171 (176)
.+.+..+|+++|+.+|+|+-.+.|.|..+.. .++.+
T Consensus 47 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~~~~ 82 (150)
T 4ga2_A 47 YDLAKKYICTYINVQERDPKAHRFLGLLYEL-EENTD 82 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCchH
Confidence 5788999999999999999999999988776 44443
No 11
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=85.26 E-value=0.54 Score=32.63 Aligned_cols=31 Identities=29% Similarity=0.426 Sum_probs=26.0
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
...+..+|+++|+.+|.|+.++.|.|..+..
T Consensus 29 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 59 (126)
T 4gco_A 29 YPTAMRHYNEAVKRDPENAILYSNRAACLTK 59 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHhhHHHh
Confidence 4677888899999999999999888887776
No 12
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=84.60 E-value=0.5 Score=32.60 Aligned_cols=31 Identities=13% Similarity=-0.036 Sum_probs=22.0
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
.+.+..+|+++|+.+|+|+..+-|.|..+..
T Consensus 68 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 68 YEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 4566777777777777777777777766655
No 13
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=84.51 E-value=0.26 Score=38.52 Aligned_cols=36 Identities=8% Similarity=0.042 Sum_probs=30.1
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcCc
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCSK 171 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~~ 171 (176)
.+.+...|+++|+.+|+++-++.||++|+.. .++.+
T Consensus 185 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~g~~~ 220 (308)
T 2ond_A 185 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSH-LNEDN 220 (308)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TCCHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-CCCHH
Confidence 4678899999999999999999999999866 34433
No 14
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=84.44 E-value=0.84 Score=28.90 Aligned_cols=31 Identities=6% Similarity=0.030 Sum_probs=21.9
Q ss_pred CCcHHHHHHHHHHhCCCCch-hhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPL-LLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~L-lL~NYAqFL~~ 165 (176)
.+.+..+|+++|+.+|+++. .+-|.|+.+..
T Consensus 16 ~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~ 47 (99)
T 2kc7_A 16 IENALQALEEFLQTEPVGKDEAYYLMGNAYRK 47 (99)
T ss_dssp HHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 35566777777777777777 77777776655
No 15
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=84.18 E-value=0.68 Score=30.67 Aligned_cols=31 Identities=26% Similarity=0.218 Sum_probs=22.9
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
...+..+|+++|+.+|+|+.++.|.|..+..
T Consensus 20 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~ 50 (126)
T 3upv_A 20 WPNAVKAYTEMIKRAPEDARGYSNRAAALAK 50 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 4566777788888888888777777776655
No 16
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=84.18 E-value=0.97 Score=27.56 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=27.6
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
.+.+..+|+++++.+|+++..+.|.++.+..
T Consensus 59 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 59 YDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 4778899999999999999999999987754
No 17
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=83.16 E-value=0.89 Score=31.76 Aligned_cols=31 Identities=23% Similarity=0.305 Sum_probs=27.7
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
.+.+..+|+++|+.||+|+-.+.+.|..+..
T Consensus 21 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 51 (184)
T 3vtx_A 21 FDGAIRAYKKVLKADPNNVETLLKLGKTYMD 51 (184)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4778899999999999999999999987766
No 18
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=82.96 E-value=0.84 Score=30.06 Aligned_cols=36 Identities=6% Similarity=0.127 Sum_probs=30.1
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcCc
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCSK 171 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~~ 171 (176)
.+.+..+|+++|+.+|+++..+-|.|+.+.. .++.+
T Consensus 23 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~ 58 (100)
T 3ma5_A 23 ASRALALFEELVETDPDYVGTYYHLGKLYER-LDRTD 58 (100)
T ss_dssp HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH-TTCHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHH
Confidence 5778899999999999999999999987766 44433
No 19
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=82.56 E-value=0.7 Score=30.32 Aligned_cols=34 Identities=15% Similarity=0.056 Sum_probs=27.7
Q ss_pred cHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcCc
Q 030517 137 STDLYYQKMIQADPRNPLLLSNYARFLKEVNFCSK 171 (176)
Q Consensus 137 ~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~~ 171 (176)
.+..+|+++|+.+|+|+.++-|.|..+.. .++.+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~ 36 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAE-HEQFD 36 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHH-TTCHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHH-ccCHH
Confidence 46789999999999999999999988766 44443
No 20
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=81.93 E-value=0.69 Score=32.29 Aligned_cols=30 Identities=10% Similarity=-0.041 Sum_probs=15.7
Q ss_pred CcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 136 NSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 136 ~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
+.+..+|+++|+.+|+|+..+-|.|..++.
T Consensus 62 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 62 EKAAEDAELATVVDPKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 444555555555555555555555554443
No 21
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=81.92 E-value=1.3 Score=27.52 Aligned_cols=31 Identities=26% Similarity=0.343 Sum_probs=20.2
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
.+.+..+|+++++.+|+++.++.+.|+.+..
T Consensus 20 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 50 (118)
T 1elw_A 20 IDDALQCYSEAIKLDPHNHVLYSNRSAAYAK 50 (118)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh
Confidence 3555666777777777777776666665554
No 22
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=81.75 E-value=0.89 Score=31.71 Aligned_cols=36 Identities=22% Similarity=0.244 Sum_probs=30.4
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcCc
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCSK 171 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~~ 171 (176)
.+.+..+|+++|+.+|+|+.++.|.|..+.. .++.+
T Consensus 27 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~ 62 (164)
T 3sz7_A 27 YSKAIDLYTQALSIAPANPIYLSNRAAAYSA-SGQHE 62 (164)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHH
T ss_pred HHHHHHHHHHHHHhCCcCHHHHHHHHHHHHH-ccCHH
Confidence 5778899999999999999999999998776 34433
No 23
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=81.68 E-value=1.1 Score=27.73 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=24.9
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
.+.+..+|+++++.+|.++-.+.|+|..+..
T Consensus 22 ~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 52 (112)
T 2kck_A 22 YTESIDLFEKAIQLDPEESKYWLMKGKALYN 52 (112)
T ss_dssp HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 4667778888888888888888888887765
No 24
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=81.65 E-value=1.2 Score=28.08 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=25.6
Q ss_pred CCcHHHHHHHHHHhCCCCchhh--hhHHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLL--SNYARFLKEV 166 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL--~NYAqFL~~V 166 (176)
.+.+..+|+++|+.+|+|+-.+ .++++.+...
T Consensus 51 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~ 84 (99)
T 2kc7_A 51 WQKALNNYQSAIELNPDSPALQARKMVMDILNFY 84 (99)
T ss_dssp HHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 4678899999999999999888 6666655543
No 25
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=81.44 E-value=0.75 Score=31.68 Aligned_cols=36 Identities=6% Similarity=-0.041 Sum_probs=30.1
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcCc
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCSK 171 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~~ 171 (176)
.+.+..+|+++|..+|+|+.++.|.|..+.. .++.+
T Consensus 34 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~ 69 (142)
T 2xcb_A 34 WDDAQKIFQALCMLDHYDARYFLGLGACRQS-LGLYE 69 (142)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-HhhHH
Confidence 5778899999999999999999999998776 44433
No 26
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=81.36 E-value=0.75 Score=32.14 Aligned_cols=37 Identities=11% Similarity=0.004 Sum_probs=30.3
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcCcc
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCSKS 172 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~~r 172 (176)
.+.+..+|+++|+.+|.|+..+-|.|..+.. .++.+.
T Consensus 123 ~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~-~g~~~~ 159 (184)
T 3vtx_A 123 HDKAIEAYEKTISIKPGFIRAYQSIGLAYEG-KGLRDE 159 (184)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHH
T ss_pred chhHHHHHHHHHHhcchhhhHHHHHHHHHHH-CCCHHH
Confidence 5788899999999999999999999988776 444443
No 27
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=80.93 E-value=0.57 Score=32.54 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=21.4
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFL 163 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL 163 (176)
.+.+..+|+++|+.||+|+-.+.|+++.|
T Consensus 97 ~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 97 WSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 46677778888888888887777776654
No 28
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=80.78 E-value=1.1 Score=35.01 Aligned_cols=31 Identities=13% Similarity=0.243 Sum_probs=27.6
Q ss_pred CcHHHHHHHHHHhCCCCchhhhhHHHHHHHH
Q 030517 136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEV 166 (176)
Q Consensus 136 ~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V 166 (176)
.++...|+++|..+|+++-+.-|||+|+.+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~ 63 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQS 63 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 4566799999999999999999999999754
No 29
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=80.69 E-value=1.1 Score=29.46 Aligned_cols=31 Identities=16% Similarity=0.197 Sum_probs=21.7
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
...+..+|+++|+.+|.++.++.|.|..+..
T Consensus 25 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 55 (137)
T 3q49_B 25 YPEAAACYGRAITRNPLVAVYYTNRALCYLK 55 (137)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH
Confidence 3556677777777777777777777766654
No 30
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=80.65 E-value=0.79 Score=33.69 Aligned_cols=31 Identities=10% Similarity=0.109 Sum_probs=20.1
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
.+.+..+|+++|+.+|+|+-.+.|.+..++.
T Consensus 52 ~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~ 82 (151)
T 3gyz_A 52 IEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI 82 (151)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3556666677777777777666666665554
No 31
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=80.40 E-value=0.85 Score=32.38 Aligned_cols=31 Identities=16% Similarity=0.010 Sum_probs=21.8
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
.+.+..+|+++|+.+|+|+..+-|.|..+..
T Consensus 71 ~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 71 YDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 3566677777777777777777777766654
No 32
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=80.16 E-value=1.3 Score=31.43 Aligned_cols=29 Identities=17% Similarity=0.110 Sum_probs=25.4
Q ss_pred cHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 137 STDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 137 ~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
....+|+++|+.+|+|+-.+-|+|..+..
T Consensus 92 ~a~~~~~~al~~~P~~~~~~~~la~~~~~ 120 (176)
T 2r5s_A 92 PELKRLEQELAANPDNFELACELAVQYNQ 120 (176)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35788999999999999999999998876
No 33
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=79.78 E-value=1.7 Score=27.38 Aligned_cols=31 Identities=26% Similarity=0.299 Sum_probs=20.6
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
.+.+..+|+++++.+|+++..+.++++.+..
T Consensus 96 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 126 (131)
T 2vyi_A 96 HVEAVAYYKKALELDPDNETYKSNLKIAELK 126 (131)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 3556667777777777777766666666555
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=78.94 E-value=0.81 Score=34.02 Aligned_cols=36 Identities=19% Similarity=0.154 Sum_probs=25.8
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcCc
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCSK 171 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~~ 171 (176)
.+.+..+|+++|+.+|+|+-++.|++..+.. .++.+
T Consensus 167 ~~~A~~~~~~al~~~P~~~~~~~~la~~~~~-~g~~~ 202 (217)
T 2pl2_A 167 LDEALAQYAKALEQAPKDLDLRVRYASALLL-KGKAE 202 (217)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-ccCHH
Confidence 4677888999999999999888888887765 34443
No 35
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=78.89 E-value=1.8 Score=27.33 Aligned_cols=36 Identities=22% Similarity=0.137 Sum_probs=30.1
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcCc
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCSK 171 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~~ 171 (176)
...+..+|+++++.+|.++.++-|.|..+.. .++.+
T Consensus 20 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~~~~~ 55 (131)
T 1elr_A 20 FDTALKHYDKAKELDPTNMTYITNQAAVYFE-KGDYN 55 (131)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHH
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-hccHH
Confidence 4778899999999999999999999998776 44443
No 36
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=78.80 E-value=1.2 Score=35.24 Aligned_cols=34 Identities=15% Similarity=0.162 Sum_probs=26.6
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhh
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNF 168 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~ 168 (176)
.+.++.+|+++|+.+|+|+-.|.|++.++....+
T Consensus 216 ~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~ 249 (291)
T 3mkr_A 216 WEAAEGVLQEALDKDSGHPETLINLVVLSQHLGK 249 (291)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 4777888888888888888888888877766433
No 37
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=78.70 E-value=1.2 Score=32.59 Aligned_cols=31 Identities=3% Similarity=-0.100 Sum_probs=28.7
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
.+.+..+|+++|+.+|+||..+-|.|..+..
T Consensus 86 ~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 86 FQQAADLYAVAFALGKNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 5788999999999999999999999998876
No 38
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=77.56 E-value=1.7 Score=27.42 Aligned_cols=30 Identities=23% Similarity=0.409 Sum_probs=19.6
Q ss_pred CcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 136 NSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 136 ~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
+.+..+|+++++.+|+++..+.+.|..+..
T Consensus 29 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 58 (131)
T 2vyi_A 29 EAAVHFYGKAIELNPANAVYFCNRAAAYSK 58 (131)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 455666777777777777666666666544
No 39
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=77.00 E-value=1.7 Score=27.77 Aligned_cols=31 Identities=16% Similarity=-0.035 Sum_probs=26.2
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
.+.+..+|+++++.+|+++..+-|.|+.+..
T Consensus 66 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 96 (133)
T 2lni_A 66 FQLALKDCEECIQLEPTFIKGYTRKAAALEA 96 (133)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 4777889999999999999998888887665
No 40
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=76.98 E-value=1.8 Score=31.94 Aligned_cols=31 Identities=13% Similarity=0.118 Sum_probs=26.4
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
.+.+..+|+++|+.+|+|+-.+-|.+.+++.
T Consensus 104 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 104 EKDALRMYEKILQLEADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4778889999999999999998888887754
No 41
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=76.72 E-value=2.7 Score=26.02 Aligned_cols=31 Identities=16% Similarity=-0.127 Sum_probs=27.4
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
.+.+..+|+++++.+|+++.++.|+|..+..
T Consensus 54 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 54 YQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 4677889999999999999999999988766
No 42
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=75.52 E-value=1.6 Score=30.40 Aligned_cols=35 Identities=14% Similarity=-0.082 Sum_probs=29.6
Q ss_pred CcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcCc
Q 030517 136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCSK 171 (176)
Q Consensus 136 ~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~~ 171 (176)
+.+..+|+++|+.+|+|+..+.|.|..+.. .++.+
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~ 132 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFM-QANYA 132 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cccHH
Confidence 778999999999999999999999987766 44443
No 43
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=75.30 E-value=2.2 Score=31.40 Aligned_cols=35 Identities=20% Similarity=0.237 Sum_probs=30.3
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcC
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCS 170 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~ 170 (176)
.+.+..+|+++|+.+|+|+-.+.|.|..+.. .++.
T Consensus 70 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~ 104 (208)
T 3urz_A 70 YDKAYLFYKELLQKAPNNVDCLEACAEMQVC-RGQE 104 (208)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCH
Confidence 5788899999999999999999999998876 3443
No 44
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=74.98 E-value=2 Score=28.27 Aligned_cols=31 Identities=16% Similarity=-0.063 Sum_probs=27.6
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
.+.+..+|+++|+.+|+|+..+-|.|..+..
T Consensus 54 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 54 FPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 4778899999999999999999999988776
No 45
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=74.92 E-value=1.3 Score=36.92 Aligned_cols=38 Identities=18% Similarity=0.330 Sum_probs=31.6
Q ss_pred CcHHHHHHHHHH-----hCCCCchhhh---hHHHHHHHHhhcCccc
Q 030517 136 NSTDLYYQKMIQ-----ADPRNPLLLS---NYARFLKEVNFCSKSF 173 (176)
Q Consensus 136 ~~te~yY~~mi~-----~~P~N~LlL~---NYAqFL~~V~~D~~r~ 173 (176)
..+...||++++ .-|.||+-|+ ||+=|+|++.+|.+++
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A 192 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRA 192 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 567788998874 6899999876 9999999998887764
No 46
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=74.88 E-value=3.8 Score=27.94 Aligned_cols=31 Identities=10% Similarity=0.053 Sum_probs=25.2
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
.+.+..+|+++|+.+|+|+-.+-|.|..+..
T Consensus 67 ~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 67 DGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4677888889999999888888888877665
No 47
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=74.60 E-value=2.7 Score=26.18 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=23.9
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
...+..+|+++++.+|.++..+.+.++.+.+
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 93 YDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 4667788888888888888888887776543
No 48
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=74.49 E-value=2.1 Score=28.03 Aligned_cols=31 Identities=6% Similarity=-0.075 Sum_probs=27.9
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
.+.+..+|+++|+.+|+++..+-|.|..+..
T Consensus 59 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 89 (137)
T 3q49_B 59 PEQALADCRRALELDGQSVKAHFFLGQCQLE 89 (137)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 4778899999999999999999999988776
No 49
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=74.42 E-value=2.1 Score=35.96 Aligned_cols=30 Identities=13% Similarity=0.242 Sum_probs=27.2
Q ss_pred cHHHHHHHHHHhCCCCchhhhhHHHHHHHH
Q 030517 137 STDLYYQKMIQADPRNPLLLSNYARFLKEV 166 (176)
Q Consensus 137 ~te~yY~~mi~~~P~N~LlL~NYAqFL~~V 166 (176)
++-..|+++|..+|+++-+.-+||+|+...
T Consensus 256 ~a~~~y~~al~~~p~~~~~w~~~~~~~~~~ 285 (530)
T 2ooe_A 256 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQS 285 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 556799999999999999999999999864
No 50
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=74.23 E-value=2 Score=30.37 Aligned_cols=31 Identities=6% Similarity=0.097 Sum_probs=27.8
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
.+.+..+|+++|..+|+|+..+.|.|..+..
T Consensus 37 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 67 (148)
T 2vgx_A 37 YEDAHXVFQALCVLDHYDSRFFLGLGACRQA 67 (148)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCcccHHHHHHHHHHHHH
Confidence 5778899999999999999999999987766
No 51
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=73.95 E-value=0.75 Score=38.63 Aligned_cols=31 Identities=10% Similarity=0.132 Sum_probs=27.8
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
.+.+-.+|+++|+.+|+|+-++.+|++|+..
T Consensus 407 ~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~ 437 (530)
T 2ooe_A 407 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSH 437 (530)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHCCCCHHHHHHHHHHHHh
Confidence 4678889999999999999999999999865
No 52
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.93 E-value=3.1 Score=27.16 Aligned_cols=32 Identities=16% Similarity=0.151 Sum_probs=27.9
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEV 166 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V 166 (176)
.+.+..+|+++++.+|.++..+-|+|..++..
T Consensus 81 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 112 (148)
T 2dba_A 81 YDKAETEASKAIEKDGGDVKALYRRSQALEKL 112 (148)
T ss_dssp HHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCccCHHHHHHHHHHHHHc
Confidence 57888999999999999999999999887763
No 53
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=72.50 E-value=1.7 Score=34.01 Aligned_cols=35 Identities=14% Similarity=-0.153 Sum_probs=29.8
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcC
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCS 170 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~ 170 (176)
.+.+..+|+++++.+|+|+-.+-|.|+.+.. .++.
T Consensus 133 ~~~A~~~~~~al~~~P~~~~a~~~la~~~~~-~g~~ 167 (287)
T 3qou_A 133 YTDALPLLXDAWQLSNQNGEIGLLLAETLIA-LNRS 167 (287)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH-TTCH
T ss_pred HHHHHHHHHHHHHhCCcchhHHHHHHHHHHH-CCCH
Confidence 5778899999999999999999999998766 4443
No 54
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=72.40 E-value=2.3 Score=27.19 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=28.0
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
.+.+..+|+++++.+|+|+..+.++++.+..
T Consensus 100 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 100 YTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 5778899999999999999999999998765
No 55
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=72.37 E-value=1.4 Score=27.16 Aligned_cols=31 Identities=16% Similarity=0.044 Sum_probs=27.6
Q ss_pred CCcHHHHHHHHHHhCCC--CchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPR--NPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~--N~LlL~NYAqFL~~ 165 (176)
.+.+..+|+++++.+|. ++-.+.|.|+.+..
T Consensus 56 ~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~ 88 (112)
T 2kck_A 56 YEEAVDCYNYVINVIEDEYNKDVWAAKADALRY 88 (112)
T ss_dssp HHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcccchHHHHHHHHHHHHH
Confidence 57788999999999999 99999999988765
No 56
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=71.41 E-value=3 Score=25.98 Aligned_cols=31 Identities=26% Similarity=0.330 Sum_probs=20.0
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
.+.+..+|+++++.+|.++..+.+.|+.+..
T Consensus 59 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 59 YDEAIEYYQKALELDPNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 3555666777777777777666666665554
No 57
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=70.15 E-value=1.9 Score=26.92 Aligned_cols=31 Identities=26% Similarity=0.347 Sum_probs=25.4
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
...+..+|+++++.+|.++..+.+.|+.+..
T Consensus 85 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 115 (136)
T 2fo7_A 85 YDEAIEYYQKALELDPRSAEAWYNLGNAYYK 115 (136)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 4677888999999999988888888887765
No 58
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=70.07 E-value=3.7 Score=29.38 Aligned_cols=33 Identities=12% Similarity=0.155 Sum_probs=24.5
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHh
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVN 167 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~ 167 (176)
.+.+..+|+++++.+|+|+.++.+.++.+....
T Consensus 138 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 138 LEEAKENLYKAASLNPNNLDIRNSYELCVNKLK 170 (198)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 466777888888888888888877777776653
No 59
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=69.50 E-value=2.1 Score=35.93 Aligned_cols=38 Identities=26% Similarity=0.449 Sum_probs=31.7
Q ss_pred CcHHHHHHHHHH-----hCCCCchhhh---hHHHHHHHHhhcCccc
Q 030517 136 NSTDLYYQKMIQ-----ADPRNPLLLS---NYARFLKEVNFCSKSF 173 (176)
Q Consensus 136 ~~te~yY~~mi~-----~~P~N~LlL~---NYAqFL~~V~~D~~r~ 173 (176)
..+...||++++ ..|.||+-|. ||+=|+|++.++.+++
T Consensus 150 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~A 195 (236)
T 3iqu_A 150 DSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEA 195 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 567788998864 6899999876 9999999999887764
No 60
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=68.83 E-value=2.6 Score=28.09 Aligned_cols=30 Identities=7% Similarity=0.008 Sum_probs=17.7
Q ss_pred CcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 136 NSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 136 ~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
+.+..+|+++++.+|.++..+.+.|..+..
T Consensus 127 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 156 (186)
T 3as5_A 127 DEAIDSFKIALGLRPNEGKVHRAIAFSYEQ 156 (186)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 455556666666666666666666555544
No 61
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=68.81 E-value=3.2 Score=28.29 Aligned_cols=31 Identities=13% Similarity=0.135 Sum_probs=27.4
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
...+..+|+++|+.+|+|+..+-+.|..+..
T Consensus 33 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~ 63 (121)
T 1hxi_A 33 LAEAALAFEAVCQKEPEREEAWRSLGLTQAE 63 (121)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 4677889999999999999999999987765
No 62
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=68.66 E-value=4.9 Score=26.74 Aligned_cols=31 Identities=10% Similarity=-0.230 Sum_probs=24.4
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
...+..+|+++++.+|+++..+-|.|..+..
T Consensus 63 ~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 63 YGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 4667788888888888888888888877665
No 63
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=67.99 E-value=2.4 Score=36.10 Aligned_cols=38 Identities=24% Similarity=0.326 Sum_probs=31.3
Q ss_pred CcHHHHHHHHHH-----hCCCCchhhh---hHHHHHHHHhhcCccc
Q 030517 136 NSTDLYYQKMIQ-----ADPRNPLLLS---NYARFLKEVNFCSKSF 173 (176)
Q Consensus 136 ~~te~yY~~mi~-----~~P~N~LlL~---NYAqFL~~V~~D~~r~ 173 (176)
..+...||++++ .-|.||+-|. ||+=|+|++.++.+++
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~A 197 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRA 197 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHH
Confidence 466778998874 6899999776 9999999998887664
No 64
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=67.92 E-value=0.59 Score=33.27 Aligned_cols=31 Identities=13% Similarity=-0.106 Sum_probs=27.4
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
.+.+..+|+++|+.+|+|+-.+.++|+.+..
T Consensus 22 ~~~A~~~~~~al~~~P~~~~a~~~la~~~~~ 52 (176)
T 2r5s_A 22 HAQALNVIQTLSDELQSRGDVKLAKADCLLE 52 (176)
T ss_dssp HHHHHHHHHTSCHHHHTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 4678889999999999999999999998776
No 65
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=67.89 E-value=3.6 Score=27.43 Aligned_cols=31 Identities=16% Similarity=0.295 Sum_probs=27.9
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
...+..+|+++++.+|.++.++.|.|..+..
T Consensus 29 ~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 59 (166)
T 1a17_A 29 YENAIKFYSQAIELNPSNAIYYGNRSLAYLR 59 (166)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 4778899999999999999999999988766
No 66
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=67.84 E-value=4.3 Score=32.40 Aligned_cols=32 Identities=22% Similarity=0.404 Sum_probs=28.0
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEV 166 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V 166 (176)
++.+.++|+++|+.+|+||-++.+++..++..
T Consensus 154 y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l 185 (472)
T 4g1t_A 154 NERAKVCFEKALEKKPKNPEFTSGLAIASYRL 185 (472)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 57889999999999999999999998876543
No 67
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=67.69 E-value=2.8 Score=30.34 Aligned_cols=35 Identities=11% Similarity=-0.006 Sum_probs=27.1
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcC
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCS 170 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~ 170 (176)
.+.+..+|+++|+.+|.++..+.+.|+.+.. .+|.
T Consensus 93 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g~~ 127 (275)
T 1xnf_A 93 FDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRD 127 (275)
T ss_dssp HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH-TTCH
T ss_pred HHHHHHHHHHHHhcCccccHHHHHHHHHHHH-hccH
Confidence 4677888888888888888888888887766 4443
No 68
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=67.66 E-value=3.6 Score=30.43 Aligned_cols=31 Identities=10% Similarity=-0.031 Sum_probs=27.9
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
.+.+..+|+++|+.+|+++..+.|.+..+..
T Consensus 100 ~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~ 130 (217)
T 2pl2_A 100 LEQALSVLKDAERVNPRYAPLHLQRGLVYAL 130 (217)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 4778899999999999999999999998776
No 69
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=67.55 E-value=7.1 Score=24.25 Aligned_cols=31 Identities=26% Similarity=0.347 Sum_probs=24.0
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
.+.+..+|+++++.+|.++..+.+.|+.+..
T Consensus 17 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 47 (136)
T 2fo7_A 17 YDEAIEYYQKALELDPRSAEAWYNLGNAYYK 47 (136)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcchhHHHHHHHHHHH
Confidence 3566778888888888888888888876665
No 70
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=67.32 E-value=2.5 Score=36.01 Aligned_cols=38 Identities=18% Similarity=0.299 Sum_probs=31.5
Q ss_pred CcHHHHHHHHHH----hCCCCchhhh---hHHHHHHHHhhcCccc
Q 030517 136 NSTDLYYQKMIQ----ADPRNPLLLS---NYARFLKEVNFCSKSF 173 (176)
Q Consensus 136 ~~te~yY~~mi~----~~P~N~LlL~---NYAqFL~~V~~D~~r~ 173 (176)
..+...||++++ .-|.||+-|. ||+=|+|++.++.+++
T Consensus 173 e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~A 217 (260)
T 2npm_A 173 EDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAA 217 (260)
T ss_dssp HHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 466778998885 6899999775 9999999998887664
No 71
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=67.18 E-value=3 Score=27.04 Aligned_cols=31 Identities=6% Similarity=-0.003 Sum_probs=19.8
Q ss_pred CCcHHHHHHHHHHhCCCC---chhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRN---PLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N---~LlL~NYAqFL~~ 165 (176)
.+.+..+|+++|+.+|++ +..+-+.|..+..
T Consensus 55 ~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~ 88 (129)
T 2xev_A 55 FQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG 88 (129)
T ss_dssp HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH
Confidence 355666777777777777 4446666665554
No 72
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=67.07 E-value=2.5 Score=35.77 Aligned_cols=38 Identities=24% Similarity=0.460 Sum_probs=31.1
Q ss_pred CcHHHHHHHHHH-----hCCCCchhhh---hHHHHHHHHhhcCccc
Q 030517 136 NSTDLYYQKMIQ-----ADPRNPLLLS---NYARFLKEVNFCSKSF 173 (176)
Q Consensus 136 ~~te~yY~~mi~-----~~P~N~LlL~---NYAqFL~~V~~D~~r~ 173 (176)
..+...||++++ ..|.||+-|. ||+=|+|++.++.+++
T Consensus 148 ~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~A 193 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQA 193 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 556778998764 6899999876 9999999999887664
No 73
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=67.04 E-value=3.4 Score=32.18 Aligned_cols=24 Identities=17% Similarity=0.403 Sum_probs=20.3
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhh
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSN 158 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~N 158 (176)
.+.+..+|+++|+.||+|++...+
T Consensus 107 ~~eA~~~~~kAl~l~P~~~~y~~a 130 (158)
T 1zu2_A 107 FDLATQFFQQAVDEQPDNTHYLKS 130 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHH
Confidence 588899999999999999865544
No 74
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=66.79 E-value=5.4 Score=28.24 Aligned_cols=31 Identities=10% Similarity=0.129 Sum_probs=20.7
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
.+.+..+|+++++.+|.++.++.+.|..+..
T Consensus 141 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 171 (243)
T 2q7f_A 141 PKLALPYLQRAVELNENDTEARFQFGMCLAN 171 (243)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 4566667777777777777776666666555
No 75
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=66.72 E-value=3.2 Score=36.17 Aligned_cols=36 Identities=6% Similarity=-0.045 Sum_probs=30.4
Q ss_pred CcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcCcc
Q 030517 136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCSKS 172 (176)
Q Consensus 136 ~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~~r 172 (176)
.++...|+++|...|.++-+.-+||+|+.. .+|.++
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~-~~~~~~ 231 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIG-IGQKEK 231 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-cCCHHH
Confidence 567889999999999999999999999965 555443
No 76
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=66.67 E-value=3.8 Score=32.99 Aligned_cols=35 Identities=29% Similarity=0.321 Sum_probs=27.8
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcC
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCS 170 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~ 170 (176)
.+.+..+|+++|+.+|+|+..+.|.|..+.. .++.
T Consensus 41 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~ 75 (537)
T 3fp2_A 41 FNEAIKYYQYAIELDPNEPVFYSNISACYIS-TGDL 75 (537)
T ss_dssp CC-CHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCH
T ss_pred HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCH
Confidence 5777889999999999999999999988766 3443
No 77
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=66.32 E-value=3.9 Score=27.01 Aligned_cols=38 Identities=8% Similarity=-0.030 Sum_probs=30.9
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcCccc
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCSKSF 173 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~~r~ 173 (176)
.+.+..+|+++|+.+|+|+-+ .+|.+-+....++.+++
T Consensus 77 ~~~A~~~~~~al~~~p~~~~~-~~~~~ai~~~~~~l~~~ 114 (117)
T 3k9i_A 77 YEQGVELLLKIIAETSDDETI-QSYKQAILFYADKLDET 114 (117)
T ss_dssp HHHHHHHHHHHHHHHCCCHHH-HHTHHHHHHHTTCTTCC
T ss_pred HHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHHHHHH
Confidence 477889999999999999975 46778787777777764
No 78
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=66.14 E-value=3.6 Score=32.14 Aligned_cols=31 Identities=16% Similarity=0.197 Sum_probs=24.7
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
.+.+..+|+++|+.+|+|+.++.|.|..+..
T Consensus 20 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 50 (281)
T 2c2l_A 20 YPEAAACYGRAITRNPLVAVYYTNRALCYLK 50 (281)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 4667788888888888888888888876665
No 79
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=65.90 E-value=3.7 Score=31.64 Aligned_cols=31 Identities=13% Similarity=0.111 Sum_probs=19.3
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
.+.+..+|+++++.+|+++.++.|.+..+..
T Consensus 229 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 259 (365)
T 4eqf_A 229 FNRAIDAFNAALTVRPEDYSLWNRLGATLAN 259 (365)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4556666666666666666666666665544
No 80
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=65.43 E-value=3.8 Score=35.17 Aligned_cols=32 Identities=16% Similarity=0.287 Sum_probs=27.1
Q ss_pred CCCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 134 ~~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
..+.+..+|+++|+.+|+++..+.|.|..+.+
T Consensus 21 ~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~ 52 (477)
T 1wao_1 21 DYENAIKFYSQAIELNPSNAIYYGNRSLAYLR 52 (477)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 45778889999999999999999998887766
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=64.85 E-value=5.8 Score=26.36 Aligned_cols=31 Identities=6% Similarity=0.046 Sum_probs=23.2
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
.+.+..+|+++++.+|.++.++.+.|..+..
T Consensus 58 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 58 VDRGTELLERSLADAPDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 4566777888888888888887777776655
No 82
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=64.72 E-value=3.7 Score=28.09 Aligned_cols=38 Identities=21% Similarity=0.166 Sum_probs=29.2
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcCccc
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCSKSF 173 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~~r~ 173 (176)
...+..+++++|+.||+|+=-+-..+...++ .+|++++
T Consensus 25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~-~g~y~~A 62 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPYNEAALSLIANDHFI-SFRFQEA 62 (93)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH-cCCHHHH
Confidence 4788999999999999999777666666555 5555543
No 83
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=64.03 E-value=4.5 Score=28.54 Aligned_cols=35 Identities=6% Similarity=-0.007 Sum_probs=29.6
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcC
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCS 170 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~ 170 (176)
.+.+..+|+++|+.+|+++..+.|.|..+.. .++.
T Consensus 53 ~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~-~~~~ 87 (213)
T 1hh8_A 53 MTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ-TEKY 87 (213)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHH-cccH
Confidence 5778899999999999999999999988776 3443
No 84
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=63.99 E-value=3.4 Score=30.70 Aligned_cols=35 Identities=14% Similarity=0.007 Sum_probs=26.1
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcC
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCS 170 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~ 170 (176)
...+..+|+++++.+|+++.++.+.|..+.. .+|.
T Consensus 288 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~ 322 (359)
T 3ieg_A 288 PVEAIRICSEVLQMEPDNVNALKDRAEAYLI-EEMY 322 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-cCCH
Confidence 4677788888888888888888888887665 3443
No 85
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=63.97 E-value=7.1 Score=24.51 Aligned_cols=34 Identities=15% Similarity=0.155 Sum_probs=28.6
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhc
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFC 169 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D 169 (176)
.+.+..+|+++++.+| |+-+..+.++.+..++..
T Consensus 95 ~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 128 (131)
T 1elr_A 95 YKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ 128 (131)
T ss_dssp HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence 5788999999999999 788888888887776654
No 86
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.92 E-value=4.9 Score=26.19 Aligned_cols=29 Identities=14% Similarity=0.252 Sum_probs=25.6
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFL 163 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL 163 (176)
.+.+..+|+++++.+|+|+-+..++++..
T Consensus 115 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 115 LDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 57788999999999999999998888764
No 87
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=63.82 E-value=3.6 Score=29.75 Aligned_cols=36 Identities=8% Similarity=0.119 Sum_probs=30.1
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcCc
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCSK 171 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~~ 171 (176)
.+.+..+|+++|+.+|+++..+.+.|..+.. .++.+
T Consensus 59 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~~~~ 94 (275)
T 1xnf_A 59 RALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGNFD 94 (275)
T ss_dssp HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHH
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-ccCHH
Confidence 5788999999999999999999999988766 44443
No 88
>2g0u_A Type III secretion system needle protein; helix-turn-helix, unknown function; NMR {Burkholderia pseudomallei} SCOP: a.2.20.1
Probab=63.65 E-value=5.1 Score=29.79 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=22.0
Q ss_pred CCcHHHHHHHHH---HhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMI---QADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi---~~~P~N~LlL~NYAqFL~~ 165 (176)
......-++.+| +.+|.||.+|++|=.-|-+
T Consensus 29 a~~~~~~l~~Al~~L~~~psNPa~LAe~Qa~lse 62 (92)
T 2g0u_A 29 VKDLNKQLQDAQANLTKNPSDPTALANYQMIMSE 62 (92)
T ss_dssp THHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 344455566554 6799999999999776643
No 89
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=63.60 E-value=3.9 Score=26.45 Aligned_cols=31 Identities=6% Similarity=0.038 Sum_probs=24.8
Q ss_pred CCcHHHHHHHHHHhCCCCc---hhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNP---LLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~---LlL~NYAqFL~~ 165 (176)
...+..+|+++++.+|+++ -.+-+.|..++.
T Consensus 18 ~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~ 51 (129)
T 2xev_A 18 YDDASQLFLSFLELYPNGVYTPNALYWLGESYYA 51 (129)
T ss_dssp HHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH
Confidence 4678899999999999999 466677766554
No 90
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=63.53 E-value=3.7 Score=29.88 Aligned_cols=36 Identities=8% Similarity=0.055 Sum_probs=30.6
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcCc
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCSK 171 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~~ 171 (176)
.+.+..+|+++++.+|+++..+.+.|..+.. .+|.+
T Consensus 90 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~ 125 (272)
T 3u4t_A 90 DSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN-KGNFP 125 (272)
T ss_dssp HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH-TTCHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-ccCHH
Confidence 5788999999999999999999999998876 44444
No 91
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=63.36 E-value=1.9 Score=31.95 Aligned_cols=31 Identities=13% Similarity=0.018 Sum_probs=24.1
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
.+.+..+|+++++.+|+++..+.|.|+.+..
T Consensus 252 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 282 (330)
T 3hym_B 252 YAEALDYHRQALVLIPQNASTYSAIGYIHSL 282 (330)
T ss_dssp HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHHHH
Confidence 4677778888888888888888888877665
No 92
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=63.06 E-value=4.8 Score=27.83 Aligned_cols=31 Identities=10% Similarity=0.024 Sum_probs=20.4
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
...+..+|+++|+.+|+|+-.+-+.|+.++.
T Consensus 79 ~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~ 109 (162)
T 3rkv_A 79 LHEAEETSSEVLKREETNEKALFRRAKARIA 109 (162)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 3555666777777777777766666666555
No 93
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=63.00 E-value=3.3 Score=35.40 Aligned_cols=38 Identities=18% Similarity=0.330 Sum_probs=31.1
Q ss_pred CcHHHHHHHHHH-----hCCCCchhhh---hHHHHHHHHhhcCccc
Q 030517 136 NSTDLYYQKMIQ-----ADPRNPLLLS---NYARFLKEVNFCSKSF 173 (176)
Q Consensus 136 ~~te~yY~~mi~-----~~P~N~LlL~---NYAqFL~~V~~D~~r~ 173 (176)
..+...||++++ ..|.||+-|. ||+=|+|++.++.+++
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~A 218 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRA 218 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 556788998764 6899999876 9999999998887664
No 94
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=62.66 E-value=8.9 Score=23.89 Aligned_cols=33 Identities=9% Similarity=-0.076 Sum_probs=27.3
Q ss_pred CCcHHHHHHHHHHhCCCC------chhhhhHHHHHHHHh
Q 030517 135 NNSTDLYYQKMIQADPRN------PLLLSNYARFLKEVN 167 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N------~LlL~NYAqFL~~V~ 167 (176)
.+.+..+|+++|+.+|+| +..+-+.++.+....
T Consensus 54 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 92 (111)
T 2l6j_A 54 YTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVG 92 (111)
T ss_dssp HHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 477889999999999999 777888888776644
No 95
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=62.14 E-value=3.3 Score=38.41 Aligned_cols=31 Identities=23% Similarity=0.239 Sum_probs=21.1
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
.+.+..+|+++|+.+|+++..+.|.|..|++
T Consensus 25 ~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~ 55 (723)
T 4gyw_A 25 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQ 55 (723)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3556667777777777777777777766655
No 96
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=61.83 E-value=4.1 Score=29.40 Aligned_cols=35 Identities=34% Similarity=0.462 Sum_probs=28.8
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcC
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCS 170 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~ 170 (176)
.+.+..+|+++++.+|.++.++.++|..+.. .++.
T Consensus 87 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~g~~ 121 (252)
T 2ho1_A 87 PKLADEEYRKALASDSRNARVLNNYGGFLYE-QKRY 121 (252)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCH
T ss_pred HHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH-HhHH
Confidence 5788899999999999999999999987765 3443
No 97
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=61.64 E-value=5.8 Score=28.06 Aligned_cols=31 Identities=16% Similarity=0.159 Sum_probs=27.0
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
.+.+..+|+++++.+|.++.++.++|..+..
T Consensus 107 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 137 (243)
T 2q7f_A 107 YKEAKDMFEKALRAGMENGDLFYMLGTVLVK 137 (243)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 5788899999999999999999999887765
No 98
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=61.43 E-value=3.8 Score=33.02 Aligned_cols=31 Identities=16% Similarity=-0.014 Sum_probs=27.1
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
.+.+..+|+++|+.+|+|+-.+-|.|+.+..
T Consensus 212 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 242 (336)
T 1p5q_A 212 FSAAIESCNKALELDSNNEKGLSRRGEAHLA 242 (336)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 5778889999999999999999999988766
No 99
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=61.43 E-value=3 Score=30.17 Aligned_cols=30 Identities=7% Similarity=0.069 Sum_probs=18.5
Q ss_pred CcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 136 NSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 136 ~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
+.+..+|+++|+.+|+++-.+.+.|..+..
T Consensus 59 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 88 (228)
T 4i17_A 59 KEAADYFDIAIKKNYNLANAYIGKSAAYRD 88 (228)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 455566666666666666666666655544
No 100
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=61.40 E-value=5.9 Score=28.08 Aligned_cols=31 Identities=26% Similarity=0.218 Sum_probs=24.9
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
.+.+..+|+++++.+|.++.++.|.|..+..
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 185 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAK 185 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 4677888888888888888888888877665
No 101
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=61.09 E-value=6.7 Score=28.23 Aligned_cols=35 Identities=11% Similarity=0.191 Sum_probs=29.3
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcC
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCS 170 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~ 170 (176)
...+..+|+++++.+|.++..+.+.|..+.. .+|.
T Consensus 53 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~~~ 87 (252)
T 2ho1_A 53 TEQAKVPLRKALEIDPSSADAHAALAVVFQT-EMEP 87 (252)
T ss_dssp TGGGHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCH
T ss_pred hHHHHHHHHHHHhcCCChHHHHHHHHHHHHH-cCCH
Confidence 5778999999999999999999999987766 4443
No 102
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=60.74 E-value=5.1 Score=27.69 Aligned_cols=32 Identities=3% Similarity=0.098 Sum_probs=24.2
Q ss_pred CCcHHHHHHHHHHhCCCCc-hhhhhHHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNP-LLLSNYARFLKEV 166 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~-LlL~NYAqFL~~V 166 (176)
.+.+..+|+++|+.+|+|+ .+....++....+
T Consensus 113 ~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 113 LDEAEEDLKLLLRNHPAAASVVAREMKIVTERR 145 (162)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 5788899999999999999 5555555544443
No 103
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=60.63 E-value=5.6 Score=36.92 Aligned_cols=31 Identities=19% Similarity=0.195 Sum_probs=24.4
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
.+.+..+|+++|+.+|+++-.+.|.|..+..
T Consensus 127 ~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 127 IPEAIASYRTALKLKPDFPDAYCNLAHCLQI 157 (723)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHhhhhhHHHh
Confidence 4677788888888888888888888877665
No 104
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=60.10 E-value=7.1 Score=28.14 Aligned_cols=29 Identities=24% Similarity=0.209 Sum_probs=22.9
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFL 163 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL 163 (176)
.+.+..+|+++|+.+|+|+.++.+++..+
T Consensus 92 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 120 (228)
T 4i17_A 92 NQEYIATLTEGIKAVPGNATIEKLYAIYY 120 (228)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 57889999999999999996655554443
No 105
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=60.03 E-value=4.3 Score=28.80 Aligned_cols=36 Identities=14% Similarity=-0.153 Sum_probs=30.5
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcCc
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCSK 171 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~~ 171 (176)
.+.+..+|+++|+.+|+++..+.+.|+.+.. .++.+
T Consensus 189 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~g~~~ 224 (258)
T 3uq3_A 189 FPEAIADCNKAIEKDPNFVRAYIRKATAQIA-VKEYA 224 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH-HhhHH
Confidence 5788999999999999999999999998776 44443
No 106
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=60.02 E-value=6.7 Score=28.89 Aligned_cols=22 Identities=36% Similarity=0.644 Sum_probs=18.6
Q ss_pred HHHHhCCCCchhhhhHHHHHHH
Q 030517 144 KMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 144 ~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
+.|+.||.||-+|++|=+-|.+
T Consensus 35 ~~L~~~PsnPa~LAeyQ~kl~e 56 (85)
T 2ca5_A 35 DKLAKNPSNPQLLAEYQSKLSE 56 (85)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHH
Confidence 6778899999999999776654
No 107
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=59.25 E-value=4.6 Score=31.12 Aligned_cols=37 Identities=8% Similarity=0.011 Sum_probs=30.4
Q ss_pred CCCcHHHHHHHHHHhCCC--CchhhhhHHHHHHHHhhcCc
Q 030517 134 GNNSTDLYYQKMIQADPR--NPLLLSNYARFLKEVNFCSK 171 (176)
Q Consensus 134 ~~~~te~yY~~mi~~~P~--N~LlL~NYAqFL~~V~~D~~ 171 (176)
..+.+..+|+++++.+|. ++-++.|.+..+.. .++.+
T Consensus 192 ~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~-~g~~~ 230 (365)
T 4eqf_A 192 VLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL-SGEFN 230 (365)
T ss_dssp HHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH-HTCHH
T ss_pred hHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH-CCCHH
Confidence 358889999999999999 99999999988776 44443
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=59.12 E-value=8.6 Score=29.92 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=25.8
Q ss_pred CcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 136 NSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 136 ~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
......|+++++.+|+|+-.+-|+|..|.+
T Consensus 202 ~~a~~~l~~al~~~P~~~~~~~~la~~l~~ 231 (287)
T 3qou_A 202 TPEIQQLQQQVAENPEDAALATQLALQLHQ 231 (287)
T ss_dssp CHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 445778899999999999999999998876
No 109
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=57.89 E-value=7.9 Score=30.16 Aligned_cols=31 Identities=16% Similarity=0.225 Sum_probs=19.1
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
.+.+..+|++++..+|+|+.++.|.+..+..
T Consensus 219 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 249 (388)
T 1w3b_A 219 FDRAVAAYLRALSLSPNHAVVHGNLACVYYE 249 (388)
T ss_dssp TTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcCCHHHHHHHHHHHHH
Confidence 3556666666666666666666666655443
No 110
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=57.06 E-value=9.4 Score=32.14 Aligned_cols=30 Identities=10% Similarity=0.170 Sum_probs=17.3
Q ss_pred CcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 136 NSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 136 ~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
..+..+|+++|+.||+|+-.+.|-+..+..
T Consensus 183 ~eAl~~~~kal~ldP~~~~a~~~lg~~~~~ 212 (382)
T 2h6f_A 183 SQELEFIADILNQDAKNYHAWQHRQWVIQE 212 (382)
T ss_dssp TTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccCHHHHHHHHHHHHH
Confidence 455566666666666666665555554444
No 111
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=56.97 E-value=8 Score=26.75 Aligned_cols=31 Identities=19% Similarity=0.402 Sum_probs=26.2
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
.+.+..+|+++++.+|.++..+.+.|..+..
T Consensus 58 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 58 NDKAQESFRQALSIKPDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 4677889999999999999988888888765
No 112
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=56.67 E-value=8.2 Score=31.05 Aligned_cols=34 Identities=18% Similarity=0.149 Sum_probs=29.4
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhh
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNF 168 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~ 168 (176)
.+.+..+|+++|+.+|+|+-.+.|.++.+....+
T Consensus 246 ~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~ 279 (336)
T 1p5q_A 246 FELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR 279 (336)
T ss_dssp HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 5788899999999999999999999988776443
No 113
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=56.29 E-value=5.7 Score=28.84 Aligned_cols=36 Identities=11% Similarity=0.002 Sum_probs=28.3
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcCc
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCSK 171 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~~ 171 (176)
.+.+..+|+++|+.+|+++-.+.+.|..++. .++.+
T Consensus 19 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-~~~~~ 54 (272)
T 3u4t_A 19 YAEAIEVFNKLEAKKYNSPYIYNRRAVCYYE-LAKYD 54 (272)
T ss_dssp HHHHHHHHHHHHHTTCCCSTTHHHHHHHHHH-TTCHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HhhHH
Confidence 4778899999999999999888888885544 44443
No 114
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=56.21 E-value=9 Score=27.33 Aligned_cols=32 Identities=13% Similarity=-0.102 Sum_probs=28.6
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEV 166 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V 166 (176)
...+..+|+++|+.+|.++-.+-|.|+.+...
T Consensus 104 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 135 (198)
T 2fbn_A 104 YPKAIDHASKVLKIDKNNVKALYKLGVANMYF 135 (198)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence 57888999999999999999999999988763
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=56.12 E-value=4.7 Score=34.22 Aligned_cols=31 Identities=13% Similarity=0.228 Sum_probs=19.6
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
.+.+..+|+++++.+|+|+-.+.|+|+.+..
T Consensus 39 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 69 (568)
T 2vsy_A 39 TTAGEMAVQRGLALHPGHPEAVARLGRVRWT 69 (568)
T ss_dssp HHHHHHHHHHHHTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3555666666666666666666666665554
No 116
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=55.97 E-value=6.6 Score=33.23 Aligned_cols=37 Identities=8% Similarity=0.041 Sum_probs=31.3
Q ss_pred C-CcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcCcc
Q 030517 135 N-NSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCSKS 172 (176)
Q Consensus 135 ~-~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~~r 172 (176)
. +.+..+|+++|+.+|+|+-.+.|.|..++. .+|.+.
T Consensus 118 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~ 155 (474)
T 4abn_A 118 YSPEAEVLLSKAVKLEPELVEAWNQLGEVYWK-KGDVTS 155 (474)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHH
T ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHH
Confidence 5 789999999999999999999999988776 455443
No 117
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=55.74 E-value=9.7 Score=26.32 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=25.4
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
.+.+..+|+++++.+|.++..+.+.|..+..
T Consensus 129 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 159 (225)
T 2vq2_A 129 FGLAEAYLKRSLAAQPQFPPAFKELARTKML 159 (225)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 4677888888999999888888888887765
No 118
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=55.44 E-value=8.7 Score=31.86 Aligned_cols=30 Identities=17% Similarity=0.080 Sum_probs=16.3
Q ss_pred CcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 136 NSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 136 ~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
+.+..+|+++|+.+|+|+-.+-|.|+.+..
T Consensus 290 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 319 (370)
T 1ihg_A 290 QGAVDSCLEALEIDPSNTKALYRRAQGWQG 319 (370)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 445555555555555555555555554443
No 119
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=55.03 E-value=5.8 Score=32.05 Aligned_cols=31 Identities=13% Similarity=0.093 Sum_probs=27.3
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
.+.+..+|+++|+.+|+|+-.+-|.|+-+..
T Consensus 246 ~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~ 276 (338)
T 2if4_A 246 YDEAIGHCNIVLTEEEKNPKALFRRGKAKAE 276 (338)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4677889999999999999999999988766
No 120
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=54.91 E-value=7.1 Score=34.95 Aligned_cols=31 Identities=6% Similarity=-0.264 Sum_probs=15.9
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
.+.+..+|+++|+.+|+|+..+-|.|..+..
T Consensus 449 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 449 VAKATRKLDDLAERVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 3445555555555555555555555544443
No 121
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=54.90 E-value=9.9 Score=28.03 Aligned_cols=41 Identities=5% Similarity=0.058 Sum_probs=31.9
Q ss_pred CCCCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcCccc
Q 030517 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCSKSF 173 (176)
Q Consensus 133 ~~~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~~r~ 173 (176)
+....+..+|+++++.+|+|+..+.+.++.|....+|.+.|
T Consensus 284 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~a~ 324 (330)
T 3hym_B 284 GNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAY 324 (330)
T ss_dssp TCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC----
T ss_pred ccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchhcc
Confidence 34567788999999999999999999999887777776654
No 122
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=54.58 E-value=3.4 Score=35.53 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=31.0
Q ss_pred CcHHHHHHHHHH-----h--CCCCchhhh---hHHHHHHHHhhcCccc
Q 030517 136 NSTDLYYQKMIQ-----A--DPRNPLLLS---NYARFLKEVNFCSKSF 173 (176)
Q Consensus 136 ~~te~yY~~mi~-----~--~P~N~LlL~---NYAqFL~~V~~D~~r~ 173 (176)
..+...||++++ . .|.||+-|. ||+=|+|++.++.+++
T Consensus 169 e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~A 216 (268)
T 3efz_A 169 KQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGA 216 (268)
T ss_dssp HHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 566788998864 3 799999776 9999999999887764
No 123
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=54.10 E-value=8.3 Score=28.61 Aligned_cols=34 Identities=3% Similarity=0.033 Sum_probs=29.2
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhh
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNF 168 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~ 168 (176)
.+.+..+|+++++.+|+|+-+..+.++.....+.
T Consensus 322 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 322 YDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 5788999999999999999998888887666554
No 124
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=53.15 E-value=16 Score=30.77 Aligned_cols=37 Identities=11% Similarity=0.110 Sum_probs=29.6
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcCcc
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCSKS 172 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~~r 172 (176)
.+.+..+|+++|+.||+|+..+.|.+..+... ++.+.
T Consensus 148 ~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~-g~~~e 184 (382)
T 2h6f_A 148 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWL-RDPSQ 184 (382)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCCTT
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc-cCHHH
Confidence 57788899999999999999999988877764 44443
No 125
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=52.22 E-value=6.5 Score=33.32 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=24.8
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
.+.+..+|+++++.+|+|+..+.|+|+.+..
T Consensus 73 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 103 (568)
T 2vsy_A 73 HAEAAVLLQQASDAAPEHPGIALWLGHALED 103 (568)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 4677888888888888888888888877665
No 126
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=51.89 E-value=7.4 Score=28.67 Aligned_cols=29 Identities=7% Similarity=0.217 Sum_probs=15.1
Q ss_pred CcHHHHHHHHHHhCCCCchhhhhHHHHHH
Q 030517 136 NSTDLYYQKMIQADPRNPLLLSNYARFLK 164 (176)
Q Consensus 136 ~~te~yY~~mi~~~P~N~LlL~NYAqFL~ 164 (176)
+.+..+|+++++.+|.++.++.+.|..+.
T Consensus 155 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 183 (327)
T 3cv0_A 155 RECRTLLHAALEMNPNDAQLHASLGVLYN 183 (327)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 44455555555555555555555554443
No 127
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=51.86 E-value=12 Score=29.45 Aligned_cols=31 Identities=19% Similarity=0.132 Sum_probs=26.5
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
...+..+|+++++.+|.|+.++-|.|..+..
T Consensus 182 ~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~ 212 (291)
T 3mkr_A 182 LQDAYYIFQEMADKCSPTLLLLNGQAACHMA 212 (291)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 5778889999999999999999998887765
No 128
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=50.97 E-value=6.5 Score=32.62 Aligned_cols=36 Identities=6% Similarity=0.109 Sum_probs=29.8
Q ss_pred CCCCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhh
Q 030517 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNF 168 (176)
Q Consensus 133 ~~~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~ 168 (176)
...+.+..+|+++++.+|+|+.++.++++.+...+.
T Consensus 321 g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~ 356 (370)
T 1ihg_A 321 KEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA 356 (370)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 345777888999999999999999999988877543
No 129
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=50.95 E-value=5.3 Score=31.12 Aligned_cols=31 Identities=6% Similarity=-0.075 Sum_probs=27.4
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
.+.+..+|+++|+.+|+|+-.+-|.|..+..
T Consensus 54 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (281)
T 2c2l_A 54 PEQALADCRRALELDGQSVKAHFFLGQCQLE 84 (281)
T ss_dssp HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4778899999999999999999999987765
No 130
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=50.87 E-value=7.7 Score=29.46 Aligned_cols=29 Identities=14% Similarity=0.227 Sum_probs=13.9
Q ss_pred CcHHHHHHHHHHhCCCCchhhhhHHHHHH
Q 030517 136 NSTDLYYQKMIQADPRNPLLLSNYARFLK 164 (176)
Q Consensus 136 ~~te~yY~~mi~~~P~N~LlL~NYAqFL~ 164 (176)
+.+..+|+++++.+|.++..+.|.|..+.
T Consensus 234 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 262 (368)
T 1fch_A 234 DKAVDCFTAALSVRPNDYLLWNKLGATLA 262 (368)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 34444455555555555544444444443
No 131
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=48.98 E-value=14 Score=34.21 Aligned_cols=31 Identities=19% Similarity=0.128 Sum_probs=27.8
Q ss_pred CcHHHHHHHHHHhCCCCchhhhhHHHHHHHH
Q 030517 136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEV 166 (176)
Q Consensus 136 ~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V 166 (176)
.++...|+++|...|.+|-+.-.||+|+...
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~ 356 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEK 356 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 4567889999999999999999999999874
No 132
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=48.73 E-value=5 Score=33.61 Aligned_cols=39 Identities=23% Similarity=0.114 Sum_probs=31.8
Q ss_pred CCcHHHHHHHHHH-----hCCCCchhhh---hHHHHHHHHhhcCccc
Q 030517 135 NNSTDLYYQKMIQ-----ADPRNPLLLS---NYARFLKEVNFCSKSF 173 (176)
Q Consensus 135 ~~~te~yY~~mi~-----~~P~N~LlL~---NYAqFL~~V~~D~~r~ 173 (176)
...+...||.+++ ..|.||+-|+ ||+=|+|++.++.+++
T Consensus 141 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~A 187 (227)
T 2o8p_A 141 LEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQV 187 (227)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHH
Confidence 3677889998875 5799998665 9999999999887765
No 133
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=48.43 E-value=9 Score=28.20 Aligned_cols=31 Identities=13% Similarity=0.248 Sum_probs=19.4
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
.+.+..+|+++++.+|+++..+.+.|..+..
T Consensus 188 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 218 (327)
T 3cv0_A 188 YDSAAANLRRAVELRPDDAQLWNKLGATLAN 218 (327)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 3555666666666666666666666665554
No 134
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=47.99 E-value=20 Score=27.79 Aligned_cols=32 Identities=13% Similarity=0.191 Sum_probs=27.2
Q ss_pred CcHHHHHHHHHHhCCCCchhhhhHHHHHHHHh
Q 030517 136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEVN 167 (176)
Q Consensus 136 ~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~ 167 (176)
..+-..|+++|+.||+|+-.+-|++.-|.+..
T Consensus 19 eeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~ 50 (158)
T 1zu2_A 19 EQIRQDAENTYKSNPLDADNLTRWGGVLLELS 50 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhc
Confidence 44567899999999999999999999777654
No 135
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=47.83 E-value=8.3 Score=32.62 Aligned_cols=31 Identities=13% Similarity=-0.093 Sum_probs=26.7
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
.+.+..+|+++|+.+|+|+-.+-|.|+.+..
T Consensus 333 ~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~ 363 (457)
T 1kt0_A 333 YTKAVECCDKALGLDSANEKGLYRRGEAQLL 363 (457)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 4567788999999999999999999988776
No 136
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=47.27 E-value=13 Score=29.26 Aligned_cols=31 Identities=16% Similarity=0.066 Sum_probs=23.3
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
.+.+..+|+++++.+|+++.++.+.|..+..
T Consensus 311 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 341 (450)
T 2y4t_A 311 PVEAIRVCSEVLQMEPDNVNALKDRAEAYLI 341 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 4667778888888888888887777776654
No 137
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=47.15 E-value=9.5 Score=30.65 Aligned_cols=29 Identities=21% Similarity=0.203 Sum_probs=14.9
Q ss_pred CcHHHHHHHHHHhCCCCchhhhhHHHHHH
Q 030517 136 NSTDLYYQKMIQADPRNPLLLSNYARFLK 164 (176)
Q Consensus 136 ~~te~yY~~mi~~~P~N~LlL~NYAqFL~ 164 (176)
+.+..+|+++++.+|+++..+.+.|..+.
T Consensus 327 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 355 (537)
T 3fp2_A 327 KNAKEDFQKAQSLNPENVYPYIQLACLLY 355 (537)
T ss_dssp HHHHHHHHHHHHHCTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44455555555555555555555554443
No 138
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=46.06 E-value=16 Score=27.70 Aligned_cols=35 Identities=9% Similarity=-0.050 Sum_probs=29.9
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcC
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCS 170 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~ 170 (176)
.+.+..+|+++++.+|+++..+.|.|..+.. .++.
T Consensus 267 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~g~~ 301 (368)
T 1fch_A 267 SEEAVAAYRRALELQPGYIRSRYNLGISCIN-LGAH 301 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-CCCH
Confidence 5788999999999999999999999988776 3443
No 139
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=44.57 E-value=10 Score=32.52 Aligned_cols=31 Identities=10% Similarity=-0.230 Sum_probs=21.6
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~ 165 (176)
.+.+..+|+++|+.+|+++..+.|.|..+..
T Consensus 56 ~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 56 YGYALGDATRAIELDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4566677777777777777777777766554
No 140
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=44.38 E-value=9.5 Score=34.13 Aligned_cols=34 Identities=9% Similarity=0.018 Sum_probs=28.0
Q ss_pred CCCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHh
Q 030517 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEVN 167 (176)
Q Consensus 134 ~~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~ 167 (176)
..+.+..+|+++|+.+|+|+..+-|.|..+.+..
T Consensus 482 ~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g 515 (681)
T 2pzi_A 482 DYDSATKHFTEVLDTFPGELAPKLALAATAELAG 515 (681)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Confidence 3578888999999999999999989888877743
No 141
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=44.25 E-value=16 Score=30.77 Aligned_cols=31 Identities=26% Similarity=0.187 Sum_probs=21.1
Q ss_pred CCcHHHHHHHHHHhCC---CCchhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADP---RNPLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P---~N~LlL~NYAqFL~~ 165 (176)
.+.+..+|+++++.+| +++.++.|.|..++.
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~ 270 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKY 270 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHH
Confidence 4666677777777777 777777777766655
No 142
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=44.08 E-value=17 Score=28.87 Aligned_cols=31 Identities=19% Similarity=0.144 Sum_probs=24.2
Q ss_pred CcHHHHHHHHHHhCCCCchhhhhHHHHHHHH
Q 030517 136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEV 166 (176)
Q Consensus 136 ~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V 166 (176)
..+-++|+++|+.+|+|+.++.|++.-+..+
T Consensus 192 ~~al~~~~~al~l~p~~~~~~~~l~~~~~~~ 222 (472)
T 4g1t_A 192 QNAIDPLRQAIRLNPDNQYLKVLLALKLHKM 222 (472)
T ss_dssp CCTHHHHHHHHHHCSSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhcCCcchHHHHHHHHHHHHH
Confidence 4566789999999999998888887655443
No 143
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=43.46 E-value=21 Score=28.01 Aligned_cols=34 Identities=3% Similarity=0.038 Sum_probs=28.4
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhh
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNF 168 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~ 168 (176)
...+..+|+++++.+|+|+..+.+.++.....+.
T Consensus 345 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 378 (450)
T 2y4t_A 345 YDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ 378 (450)
T ss_dssp HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhc
Confidence 5788999999999999999999988876555443
No 144
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=43.31 E-value=13 Score=31.40 Aligned_cols=33 Identities=15% Similarity=0.206 Sum_probs=24.7
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHh
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVN 167 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~ 167 (176)
.+.+..+|+++|+.+|+|+-.+.|.++.+....
T Consensus 367 ~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~ 399 (457)
T 1kt0_A 367 FESAKGDFEKVLEVNPQNKAARLQISMCQKKAK 399 (457)
T ss_dssp HHHHHHHHHHHHTTC----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 577889999999999999999999988776654
No 145
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=42.68 E-value=16 Score=28.34 Aligned_cols=28 Identities=21% Similarity=0.250 Sum_probs=13.7
Q ss_pred CcHHHHHHHHHHhCCCCchhhhhHHHHH
Q 030517 136 NSTDLYYQKMIQADPRNPLLLSNYARFL 163 (176)
Q Consensus 136 ~~te~yY~~mi~~~P~N~LlL~NYAqFL 163 (176)
+.+..+|+++++.+|+++-.+.|.++.+
T Consensus 356 ~~A~~~~~~a~~~~p~~~~a~~~lg~~~ 383 (388)
T 1w3b_A 356 QEALMHYKEAIRISPTFADAYSNMGNTL 383 (388)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCHHHHHhHHHHH
Confidence 4444455555555555555554444443
No 146
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=39.62 E-value=16 Score=25.69 Aligned_cols=31 Identities=13% Similarity=-0.032 Sum_probs=25.9
Q ss_pred CCcHHHHHHHHHHhCCCCc----------------hhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNP----------------LLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~----------------LlL~NYAqFL~~ 165 (176)
.+.+..+|+++++.+|.|+ ..+-|.|..+..
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 133 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK 133 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH
Confidence 5778899999999999988 777788776665
No 147
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=39.10 E-value=5.2 Score=32.37 Aligned_cols=34 Identities=9% Similarity=0.100 Sum_probs=11.3
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhh
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNF 168 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~ 168 (176)
.+.+..+|+++|+.+|+|+..+.|.++.....+.
T Consensus 280 ~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~ 313 (338)
T 2if4_A 280 MDSARDDFRKAQKYAPDDKAIRRELRALAEQEKA 313 (338)
T ss_dssp HHHHHHHHHHTTC---------------------
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 5778889999999999999999888877555444
No 148
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=38.20 E-value=18 Score=26.80 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=19.8
Q ss_pred CCcHHHHHHHHHHhCCCCchhh
Q 030517 135 NNSTDLYYQKMIQADPRNPLLL 156 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL 156 (176)
.+.+..+|+++|+.+|+++...
T Consensus 113 ~~~A~~~~~~~l~~~p~~~~~~ 134 (261)
T 3qky_A 113 TRKAIEAFQLFIDRYPNHELVD 134 (261)
T ss_dssp HHHHHHHHHHHHHHCTTCTTHH
T ss_pred HHHHHHHHHHHHHHCcCchhHH
Confidence 5788899999999999998776
No 149
>4ah2_B HLA class II histocompatibility antigen gamma CHA class II histocompatibility antigen\,DRB1-1...; MHC II, immune system, SELF antigen; 2.36A {Homo sapiens}
Probab=36.77 E-value=7.2 Score=31.48 Aligned_cols=16 Identities=44% Similarity=0.800 Sum_probs=2.9
Q ss_pred cceEEeeccccCCCCC
Q 030517 93 EIGVLVGGGIYGGGGN 108 (176)
Q Consensus 93 ~~~lv~GGG~~gGGG~ 108 (176)
.|+|-||||+.||||-
T Consensus 11 ~~~~~~~~~~~~~~~~ 26 (229)
T 4ah2_B 11 MQALPMGGGGSGGGGS 26 (229)
T ss_dssp CCCC------------
T ss_pred HhhcccCCCcCCCCCC
Confidence 6777799988776663
No 150
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=36.51 E-value=23 Score=28.01 Aligned_cols=36 Identities=14% Similarity=0.012 Sum_probs=29.9
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcCc
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCSK 171 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~~ 171 (176)
.+.+..+|+++++.+|+++..+.+.|+.+.. .+|.+
T Consensus 431 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~g~~~ 466 (514)
T 2gw1_A 431 FIEATNLLEKASKLDPRSEQAKIGLAQMKLQ-QEDID 466 (514)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-hcCHH
Confidence 4788899999999999999999999988766 44443
No 151
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=36.16 E-value=18 Score=28.02 Aligned_cols=36 Identities=14% Similarity=-0.004 Sum_probs=27.1
Q ss_pred CCcHHHHHHHHHHhCCCCch----hhhhHHHHHHHHhhcCc
Q 030517 135 NNSTDLYYQKMIQADPRNPL----LLSNYARFLKEVNFCSK 171 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~L----lL~NYAqFL~~V~~D~~ 171 (176)
.+.+..+|+++|+.+|+|+. ++.+.|..++. .+|.+
T Consensus 64 ~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~-~g~~~ 103 (411)
T 4a1s_A 64 CRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFY-LGDYN 103 (411)
T ss_dssp HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-HTCHH
T ss_pred HHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHH-CCCHH
Confidence 57888999999999999984 56677766654 44443
No 152
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=36.04 E-value=17 Score=29.89 Aligned_cols=35 Identities=3% Similarity=-0.117 Sum_probs=26.6
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcC
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCS 170 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~ 170 (176)
.+.+..+|++|++.+|.|+..+.+.+..+.. .++.
T Consensus 532 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-~g~~ 566 (597)
T 2xpi_A 532 YDAAIDALNQGLLLSTNDANVHTAIALVYLH-KKIP 566 (597)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH-TTCH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-hCCH
Confidence 4777888888888888888888888876655 4443
No 153
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=35.71 E-value=27 Score=27.65 Aligned_cols=36 Identities=11% Similarity=0.057 Sum_probs=25.2
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcCc
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCSK 171 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~~ 171 (176)
...+..+|+++++.+|.++.++.+.|..+.. .++.+
T Consensus 286 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 321 (514)
T 2gw1_A 286 STEYYNYFDKALKLDSNNSSVYYHRGQMNFI-LQNYD 321 (514)
T ss_dssp CTTGGGHHHHHHTTCTTCTHHHHHHHHHHHH-TTCTT
T ss_pred HHHHHHHHHHHhhcCcCCHHHHHHHHHHHHH-hCCHH
Confidence 4566777888888888888877777776665 34443
No 154
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=35.28 E-value=20 Score=29.48 Aligned_cols=29 Identities=21% Similarity=0.154 Sum_probs=15.2
Q ss_pred CcHHHHHHHHHHhCCCCchhhhhHHHHHH
Q 030517 136 NSTDLYYQKMIQADPRNPLLLSNYARFLK 164 (176)
Q Consensus 136 ~~te~yY~~mi~~~P~N~LlL~NYAqFL~ 164 (176)
+.+..+|++|++.+|.|+..+.+.+..+.
T Consensus 458 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (597)
T 2xpi_A 458 LLANEYLQSSYALFQYDPLLLNELGVVAF 486 (597)
T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 44455555555555555555555554443
No 155
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=33.81 E-value=6.7 Score=27.01 Aligned_cols=15 Identities=40% Similarity=0.523 Sum_probs=7.3
Q ss_pred cccceEEeeccccCC
Q 030517 91 ACEIGVLVGGGIYGG 105 (176)
Q Consensus 91 ~~~~~lv~GGG~~gG 105 (176)
....-++.|||++||
T Consensus 20 eeaaklleggggggg 34 (62)
T 2i7u_A 20 EEAAKLLEGGGGGGG 34 (62)
T ss_dssp HHHHHHHHCSSCSSS
T ss_pred HHHHHHHhcCCCCch
Confidence 334445566654433
No 156
>2p58_B Putative type III secretion protein YSCF; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} PDB: 2uwj_F
Probab=32.01 E-value=10 Score=27.45 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=5.0
Q ss_pred CcHHHHHHHHHHh---CCCCchhhhhHH
Q 030517 136 NSTDLYYQKMIQA---DPRNPLLLSNYA 160 (176)
Q Consensus 136 ~~te~yY~~mi~~---~P~N~LlL~NYA 160 (176)
.....-++.++++ ||+||..|++|=
T Consensus 27 ~~~~~~l~~a~~~l~~~p~nP~~La~~Q 54 (86)
T 2p58_B 27 DDANKAVNDSIAALKDKPDNPALLADLQ 54 (86)
T ss_dssp ----------------------CCHHHH
T ss_pred HHHHHHHHHHHHhhhcCCCCHHHHHHHH
Confidence 4445556666655 999999999984
No 157
>2izy_A CAMP-dependent protein kinase regulatory subunit II; D/D, RII, PKA, acetylation, transferase, CAMP- binding, phosphorylation, nucleotide-binding; 2.2A {Mus musculus} SCOP: a.31.1.1 PDB: 1l6e_A 1r2a_A 2drn_A 2h9r_A
Probab=28.56 E-value=82 Score=20.49 Aligned_cols=32 Identities=16% Similarity=0.294 Sum_probs=24.6
Q ss_pred CcHHHHHHHHHHhCCCCch-hhhhHHHHHHHHh
Q 030517 136 NSTDLYYQKMIQADPRNPL-LLSNYARFLKEVN 167 (176)
Q Consensus 136 ~~te~yY~~mi~~~P~N~L-lL~NYAqFL~~V~ 167 (176)
.-..+|-+..+..+|.|++ |.+||.+=|...+
T Consensus 12 ~lL~~f~~evlr~qP~Di~~Faa~YF~~L~~~~ 44 (54)
T 2izy_A 12 ELLQGYTVEVLRQQPPDLVDFAVEYFTRLREAR 44 (54)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhH
Confidence 4456788899999999997 6778877666543
No 158
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=28.53 E-value=24 Score=32.76 Aligned_cols=32 Identities=13% Similarity=0.096 Sum_probs=29.2
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEV 166 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V 166 (176)
.+++-..|+++|+..|+++.++-.|++|+...
T Consensus 486 ~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~ 517 (679)
T 4e6h_A 486 TKTACKVLELGLKYFATDGEYINKYLDFLIYV 517 (679)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhC
Confidence 47888999999999999999999999998774
No 159
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=27.88 E-value=13 Score=26.48 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=29.2
Q ss_pred CCcHHHHHHHHHHh--------CCCCchhhhhHHHHHHHHhhcCc
Q 030517 135 NNSTDLYYQKMIQA--------DPRNPLLLSNYARFLKEVNFCSK 171 (176)
Q Consensus 135 ~~~te~yY~~mi~~--------~P~N~LlL~NYAqFL~~V~~D~~ 171 (176)
.+.+..+|+++++. +|.+...+.|.|+.+.. .++.+
T Consensus 143 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~ 186 (283)
T 3edt_B 143 AEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLK-QGKYQ 186 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH-HTCHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-cCCHH
Confidence 57889999999999 88888889999988776 44443
No 160
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=27.12 E-value=26 Score=25.84 Aligned_cols=31 Identities=10% Similarity=0.034 Sum_probs=20.3
Q ss_pred CCcHHHHHHHHHHhCCCC---chhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRN---PLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N---~LlL~NYAqFL~~ 165 (176)
.+.+..+|+++|+.+|++ +..+-+.|.-++.
T Consensus 31 ~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~ 64 (261)
T 3qky_A 31 YDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQ 64 (261)
T ss_dssp HHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH
Confidence 466777888888888888 4445555544443
No 161
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=26.09 E-value=20 Score=26.39 Aligned_cols=38 Identities=5% Similarity=0.031 Sum_probs=28.6
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH-----HhhcCccc
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE-----VNFCSKSF 173 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~-----V~~D~~r~ 173 (176)
...+..+|+++++. |+++.-+-|.+.++.. |..|.+.+
T Consensus 145 ~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A 187 (212)
T 3rjv_A 145 DVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKA 187 (212)
T ss_dssp HHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHH
Confidence 57888999999988 7888888888887765 44455543
No 162
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=23.69 E-value=64 Score=23.21 Aligned_cols=31 Identities=6% Similarity=0.075 Sum_probs=23.6
Q ss_pred CCcHHHHHHHHHHhCCCCch----hhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPL----LLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~L----lL~NYAqFL~~ 165 (176)
.+.+..+|+++++.+|+|+. ++.+.|..++.
T Consensus 21 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~ 55 (338)
T 3ro2_A 21 CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFY 55 (338)
T ss_dssp HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHH
Confidence 47788999999999999964 45566665544
No 163
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=23.43 E-value=17 Score=28.07 Aligned_cols=31 Identities=6% Similarity=-0.137 Sum_probs=24.7
Q ss_pred CCcHHHHHHHHHHhCCCC------chhhhhHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRN------PLLLSNYARFLKE 165 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N------~LlL~NYAqFL~~ 165 (176)
.+.+..+|+++|+.+|.+ .-.+.|.+.++..
T Consensus 134 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~ 170 (292)
T 1qqe_A 134 YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL 170 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 578889999999998865 4567788887766
No 164
>2izx_A CAMP-dependent protein kinase type II-alpha regulatory subunit; CAMP-binding, phosphorylation, nucleotide-binding, PKA, CAMP, anchor, kinase, acetylation; 1.3A {Homo sapiens} PDB: 2hwn_A
Probab=22.61 E-value=1.2e+02 Score=18.03 Aligned_cols=30 Identities=17% Similarity=0.309 Sum_probs=22.2
Q ss_pred CcHHHHHHHHHHhCCCCch-hhhhHHHHHHH
Q 030517 136 NSTDLYYQKMIQADPRNPL-LLSNYARFLKE 165 (176)
Q Consensus 136 ~~te~yY~~mi~~~P~N~L-lL~NYAqFL~~ 165 (176)
.-..++-+.++...|.|++ +.+||.+=|.+
T Consensus 9 ~lL~~~~~~vl~~qP~di~~f~a~yF~~l~~ 39 (41)
T 2izx_A 9 ELLQGYTVEVLRQQPPDLVEFAVEYFTRLRE 39 (41)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHhh
Confidence 3456788899999999987 56777765543
No 165
>4aen_A HLA class II histocompatibility antigen, DR alpha; immune system, SELF antigen, invariant chain, CLIP; 2.20A {Homo sapiens}
Probab=22.49 E-value=18 Score=28.82 Aligned_cols=13 Identities=54% Similarity=0.900 Sum_probs=0.0
Q ss_pred ccccCCCCCccCC
Q 030517 100 GGIYGGGGNMCGG 112 (176)
Q Consensus 100 GG~~gGGG~~CGg 112 (176)
||+++|||..||+
T Consensus 1 ~~~~~~~~~~~~~ 13 (207)
T 4aen_A 1 GGGGSGGGGSGGG 13 (207)
T ss_dssp -------------
T ss_pred CCCCCCCCCCCCc
Confidence 3455666677775
No 166
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=22.41 E-value=43 Score=25.36 Aligned_cols=36 Identities=6% Similarity=-0.014 Sum_probs=26.0
Q ss_pred CCcHHHHHHHHHHhCCCCch----hhhhHHHHHHHHhhcCc
Q 030517 135 NNSTDLYYQKMIQADPRNPL----LLSNYARFLKEVNFCSK 171 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~L----lL~NYAqFL~~V~~D~~ 171 (176)
.+.+..+|+++|+.+|+|+. ++.+.|..++. .+|.+
T Consensus 25 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 64 (406)
T 3sf4_A 25 CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFY-LHDYA 64 (406)
T ss_dssp HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-TTCHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHH-hcCHH
Confidence 57788999999999999964 45566665544 44443
No 167
>2kyg_A CAMP-dependent protein kinase type II-alpha regul subunit; protein/protein, homodimer bound to monomer, protein binding; NMR {Homo sapiens}
Probab=21.35 E-value=1.2e+02 Score=19.09 Aligned_cols=30 Identities=17% Similarity=0.309 Sum_probs=23.4
Q ss_pred CcHHHHHHHHHHhCCCCch-hhhhHHHHHHH
Q 030517 136 NSTDLYYQKMIQADPRNPL-LLSNYARFLKE 165 (176)
Q Consensus 136 ~~te~yY~~mi~~~P~N~L-lL~NYAqFL~~ 165 (176)
.-..++-+..+..+|.|++ +.+||.+=|.+
T Consensus 17 ~lL~~~~~evlr~qP~Di~~Faa~yF~~l~~ 47 (50)
T 2kyg_A 17 ELLQGYTVEVLRQQPPDLVEFAVEYFTRLRE 47 (50)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 4567788899999999997 66788775554
No 168
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=21.22 E-value=49 Score=24.15 Aligned_cols=18 Identities=11% Similarity=0.082 Sum_probs=11.0
Q ss_pred CcHHHHHHHHHHhCCCCc
Q 030517 136 NSTDLYYQKMIQADPRNP 153 (176)
Q Consensus 136 ~~te~yY~~mi~~~P~N~ 153 (176)
+.+..+|+++|+.+|+++
T Consensus 21 ~~A~~~~~~~~~~~p~~~ 38 (225)
T 2yhc_A 21 RQAITQLEALDNRYPFGP 38 (225)
T ss_dssp HHHHHHHHHHHHHCTTST
T ss_pred HHHHHHHHHHHHhCCCCh
Confidence 455566666666666655
No 169
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=20.99 E-value=27 Score=24.39 Aligned_cols=36 Identities=11% Similarity=-0.034 Sum_probs=21.5
Q ss_pred CcHHHHHHHHHHhCCCCchhhhhHHHHHHH---HhhcCccc
Q 030517 136 NSTDLYYQKMIQADPRNPLLLSNYARFLKE---VNFCSKSF 173 (176)
Q Consensus 136 ~~te~yY~~mi~~~P~N~LlL~NYAqFL~~---V~~D~~r~ 173 (176)
..+-.+|+++.+. +|+.-.-|.+.++.. |.+|.+++
T Consensus 42 ~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 42 QKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred HHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 3466677777665 566666666666555 34554443
No 170
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=20.34 E-value=43 Score=29.00 Aligned_cols=32 Identities=16% Similarity=0.277 Sum_probs=27.7
Q ss_pred CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHH
Q 030517 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEV 166 (176)
Q Consensus 135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V 166 (176)
.+++-..|+++|+..|++|-++-.|++|+-..
T Consensus 336 ~~~ar~ife~al~~~~~~~~~~~~yid~e~~~ 367 (493)
T 2uy1_A 336 RATPYNIFSSGLLKHPDSTLLKEEFFLFLLRI 367 (493)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Confidence 57788899999999999998888899998663
No 171
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=20.24 E-value=62 Score=27.42 Aligned_cols=23 Identities=9% Similarity=0.229 Sum_probs=19.8
Q ss_pred cHHHHHHHHHHhCCCCchhhhhH
Q 030517 137 STDLYYQKMIQADPRNPLLLSNY 159 (176)
Q Consensus 137 ~te~yY~~mi~~~P~N~LlL~NY 159 (176)
.++.|++++.+.+|+||+++..-
T Consensus 271 ~a~~l~~qL~~~~P~hp~i~d~~ 293 (310)
T 3mv2_B 271 DTEDLTNQLVKLDHEHAFIKHHQ 293 (310)
T ss_dssp TTHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHH
Confidence 56899999999999999988643
Done!