BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030521
(176 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P1M|A Chain A, Tir1-ask1 Complex Structure
pdb|2P1N|A Chain A, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|D Chain D, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|A Chain A, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|A Chain A, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|A Chain A, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|A Chain A, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|A Chain A, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|A Chain A, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3OGK|A Chain A, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|C Chain C, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|E Chain E, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|G Chain G, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|I Chain I, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|K Chain K, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|M Chain M, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|O Chain O, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|A Chain A, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|C Chain C, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|E Chain E, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|G Chain G, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|I Chain I, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|K Chain K, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|M Chain M, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|O Chain O, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|A Chain A, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|C Chain C, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|E Chain E, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|G Chain G, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|I Chain I, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|K Chain K, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|M Chain M, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|O Chain O, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 160
Score = 107 bits (268), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 89/155 (57%), Gaps = 26/155 (16%)
Query: 13 ATKKISLKTADGHLFEVEEPVAMEFEIVKSFFDENDDASEDTVVPLPNVSAAPLSYIIEF 72
+ KKI LK++DG FEVEE VA+E + + + D D VPLPNV++ L+ +IE+
Sbjct: 2 SAKKIVLKSSDGESFEVEEAVALESQTIAHMVE---DDCVDNGVPLPNVTSKILAKVIEY 58
Query: 73 CRAHVEFRKKRSPKQEVKTFNEEFGKSKSNDELK---------------EMILVANYLNI 117
C+ HVE ++ E G + S+D+LK E+IL ANYLNI
Sbjct: 59 CKRHVEAAASKAEAVE--------GAATSDDDLKAWDADFMKIDQATLFELILAANYLNI 110
Query: 118 KDMLDYLTETVANRIKNKSVEYVRKFFGIENDFTP 152
K++LD +TVA+ IK K+ E +R F I+NDFTP
Sbjct: 111 KNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTP 145
>pdb|2ASS|A Chain A, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|A Chain A, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 159
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 85/144 (59%), Gaps = 10/144 (6%)
Query: 17 ISLKTADGHLFEVEEPVAMEFEIVKSFFDE--NDDASEDTVVPLPNVSAAPLSYIIEFCR 74
I L+++DG +FEV+ +A + +K+ ++ DD +D VPLPNV+AA L +I++C
Sbjct: 3 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 62
Query: 75 AH-------VEFRKKRSPKQEVKTFNEEFGKSKSNDELKEMILVANYLNIKDMLDYLTET 127
H + K ++ +++EF K L E+IL ANYL+IK +LD +T
Sbjct: 63 HHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQG-TLFELILAANYLDIKGLLDVTCKT 121
Query: 128 VANRIKNKSVEYVRKFFGIENDFT 151
VAN IK K+ E +RK F I+NDFT
Sbjct: 122 VANMIKGKTPEEIRKTFNIKNDFT 145
>pdb|2E31|B Chain B, Structural Basis For Selection Of Glycosylated Substrate
By Scffbs1 Ubiquitin Ligase
pdb|2E32|B Chain B, Structural Basis For Selection Of Glycosylated Substrate
By Scffbs1 Ubiquitin Ligase
pdb|2E32|D Chain D, Structural Basis For Selection Of Glycosylated Substrate
By Scffbs1 Ubiquitin Ligase
Length = 166
Score = 95.5 bits (236), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 85/144 (59%), Gaps = 10/144 (6%)
Query: 17 ISLKTADGHLFEVEEPVAMEFEIVKSFFDE--NDDASEDTVVPLPNVSAAPLSYIIEFCR 74
I L+++DG +FEV+ +A + +K+ ++ DD +D VPLPNV+AA L +I++C
Sbjct: 7 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 66
Query: 75 AH-------VEFRKKRSPKQEVKTFNEEFGKSKSNDELKEMILVANYLNIKDMLDYLTET 127
H + K ++ +++EF K L E+IL ANYL+IK +LD +T
Sbjct: 67 HHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQG-TLFELILAANYLDIKGLLDVTCKT 125
Query: 128 VANRIKNKSVEYVRKFFGIENDFT 151
VAN IK K+ E +RK F I+NDFT
Sbjct: 126 VANMIKGKTPEEIRKTFNIKNDFT 149
>pdb|1P22|B Chain B, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 145
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 82/135 (60%), Gaps = 10/135 (7%)
Query: 17 ISLKTADGHLFEVEEPVAMEFEIVKSFFDENDDASEDTVVPLPNVSAAPLSYIIEFCRAH 76
I L+++DG +FEV+ +A + +K+ + D D V PLPNV+AA L +I++C H
Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLE---DLGMDPV-PLPNVNAAILKKVIQWCTHH 59
Query: 77 VEFRKKRSPKQEVKTFNEEFGKSKSNDELKEMILVANYLNIKDMLDYLTETVANRIKNKS 136
K P ++ +++EF K L E+IL ANYL+IK +LD +TVAN IK K+
Sbjct: 60 -----KDDPPDDIPVWDQEFLKVDQG-TLFELILAANYLDIKGLLDVTCKTVANMIKGKT 113
Query: 137 VEYVRKFFGIENDFT 151
E +RK F I+NDFT
Sbjct: 114 PEEIRKTFNIKNDFT 128
>pdb|3L2O|A Chain A, Structure-Based Mechanism Of Dimerization-Dependent
Ubiquitination By The Scffbx4 Ubiquitin Ligase
Length = 149
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 82/135 (60%), Gaps = 6/135 (4%)
Query: 17 ISLKTADGHLFEVEEPVAMEFEIVKSFFDENDDASEDTVVPLPNVSAAPLSYIIEFCRAH 76
I L+++DG +FEV+ +A + +K+ + D D V PLPNV+AA L +I++C H
Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLE---DLGMDPV-PLPNVNAAILKKVIQWCTHH 59
Query: 77 VEFRKKRSPKQEVKTFNEEFGKSKSNDELKEMILVANYLNIKDMLDYLTETVANRIKNKS 136
+ S ++ +++EF K L E+IL ANYL+IK +LD +TVAN IK K+
Sbjct: 60 KD-DPGGSGTDDIPVWDQEFLKVDQG-TLFELILAANYLDIKGLLDVTCKTVANMIKGKT 117
Query: 137 VEYVRKFFGIENDFT 151
E +RK F I+NDFT
Sbjct: 118 PEEIRKTFNIKNDFT 132
>pdb|1FQV|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|D Chain D, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|F Chain F, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|H Chain H, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|J Chain J, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|L Chain L, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|N Chain N, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|P Chain P, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2OVP|A Chain A, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|A Chain A, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|A Chain A, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 149
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 82/135 (60%), Gaps = 6/135 (4%)
Query: 17 ISLKTADGHLFEVEEPVAMEFEIVKSFFDENDDASEDTVVPLPNVSAAPLSYIIEFCRAH 76
I L+++DG +FEV+ +A + +K+ + D D V PLPNV+AA L +I++C H
Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLE---DLGMDPV-PLPNVNAAILKKVIQWCTHH 59
Query: 77 VEFRKKRSPKQEVKTFNEEFGKSKSNDELKEMILVANYLNIKDMLDYLTETVANRIKNKS 136
+ S ++ +++EF K L E+IL ANYL+IK +LD +TVAN IK K+
Sbjct: 60 KD-DPGGSGTDDIPVWDQEFLKVDQG-TLFELILAANYLDIKGLLDVTCKTVANMIKGKT 117
Query: 137 VEYVRKFFGIENDFT 151
E +RK F I+NDFT
Sbjct: 118 PEEIRKTFNIKNDFT 132
>pdb|1FS1|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS1|D Chain D, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|D Chain D, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 141
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 82/142 (57%), Gaps = 12/142 (8%)
Query: 17 ISLKTADGHLFEVEEPVAMEFEIVKSFFDENDDASEDTVVPLPNVSAAPLSYIIEFCRAH 76
I L+++DG +FEV+ +A + +K+ + D D V PLPNV+AA L +I++C H
Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLE---DLGMDPV-PLPNVNAAILKKVIQWCTHH 59
Query: 77 -------VEFRKKRSPKQEVKTFNEEFGKSKSNDELKEMILVANYLNIKDMLDYLTETVA 129
+ K ++ +++EF K L E+IL ANYL+IK +LD +TVA
Sbjct: 60 KDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQG-TLFELILAANYLDIKGLLDVTCKTVA 118
Query: 130 NRIKNKSVEYVRKFFGIENDFT 151
N IK K+ E +RK F I+NDFT
Sbjct: 119 NMIKGKTPEEIRKTFNIKNDFT 140
>pdb|1LDK|D Chain D, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 133
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 76/135 (56%), Gaps = 12/135 (8%)
Query: 17 ISLKTADGHLFEVEEPVAMEFEIVKSFFDENDDASEDTVVPLPNVSAAPLSYIIEFCRAH 76
I L+++DG +FEV+ +A + +K+ + D D V PLPNV+AA L +I++C H
Sbjct: 3 IKLQSSDGEIFEVDVEIAKQSVTIKTMLE---DLGMDPV-PLPNVNAAILKKVIQWCTHH 58
Query: 77 -------VEFRKKRSPKQEVKTFNEEFGKSKSNDELKEMILVANYLNIKDMLDYLTETVA 129
+ K ++ +++EF K L E+IL ANYL+IK +LD +TVA
Sbjct: 59 KDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQG-TLFELILAANYLDIKGLLDVTCKTVA 117
Query: 130 NRIKNKSVEYVRKFF 144
N IK K+ E +RK F
Sbjct: 118 NMIKGKTPEEIRKTF 132
>pdb|3MKS|A Chain A, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|C Chain C, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|A Chain A, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|C Chain C, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 169
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 85/152 (55%), Gaps = 17/152 (11%)
Query: 14 TKKISLKTADGHLFEVEEPVAMEFEIVKSFFDE----NDDASEDTVVPLPNVSAAPLSYI 69
T + L + +G F V++ +A ++K++ ++ +D+ ++ V+P+PNV ++ L +
Sbjct: 6 TSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKV 65
Query: 70 IEFCRAHVEFR---------KKRSPKQEVKTFNEEFGKSKSNDELKEMILVANYLNIKDM 120
IE+ H + +K +P V +++ EF K + L E+IL ANYLNIK +
Sbjct: 66 IEWAEHHRDSNFPDEDDDDSRKSAP---VDSWDREFLKV-DQEMLYEIILAANYLNIKPL 121
Query: 121 LDYLTETVANRIKNKSVEYVRKFFGIENDFTP 152
LD + VA I+ +S E +R+ F I NDFTP
Sbjct: 122 LDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTP 153
>pdb|1NEX|A Chain A, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|C Chain C, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 169
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 82/152 (53%), Gaps = 17/152 (11%)
Query: 14 TKKISLKTADGHLFEVEEPVAMEFEIVKSFFDENDDASEDT----VVPLPNVSAAPLSYI 69
T + L + +G F V++ +A ++K++ ++ D ++ V P+PNV ++ L +
Sbjct: 6 TSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDXGDDDDEDDDEIVXPVPNVRSSVLQKV 65
Query: 70 IEFCRAHVEFR---------KKRSPKQEVKTFNEEFGKSKSNDELKEMILVANYLNIKDM 120
IE+ H + +K +P V +++ EF K + L E+IL ANYLNIK +
Sbjct: 66 IEWAEHHRDSNFPDEDDDDSRKSAP---VDSWDREFLKV-DQEXLYEIILAANYLNIKPL 121
Query: 121 LDYLTETVANRIKNKSVEYVRKFFGIENDFTP 152
LD + VA I+ +S E +R+ F I NDFTP
Sbjct: 122 LDAGCKVVAEXIRGRSPEEIRRTFNIVNDFTP 153
>pdb|3E1B|Z Chain Z, Structure Of The 50s Subunit Of E. Coli Ribosome In
Pre-Accommodation State
pdb|3E1D|Z Chain Z, Structure Of The 50s Subunit Of E. Coli Ribosome In
Post-Accommodation State
Length = 213
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 18 SLKTADGHLFEVEEPVAMEFEIVKSF--FDENDDASEDTVVPLPNVSAAPLSYIIEFCRA 75
+LK A + V+ EI+ +F D+ D +VPLP + ++
Sbjct: 11 ALKLALSTEYNVKRNFTQSVEIILTFKGIDKKGDLKLREIVPLPKQPSKAKRVLVVPSSE 70
Query: 76 HVEFRKKRSPK 86
+E+ KK SPK
Sbjct: 71 QLEYAKKASPK 81
>pdb|3GR5|A Chain A, Periplasmic Domain Of The Outer Membrane Secretin Escc
From Enteropathogenic E.Coli (Epec)
Length = 156
Score = 26.6 bits (57), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 103 DELKEMILVANYLNIKDMLDYLTETVANRIKNKSVEYVRKFFGIENDFTP 152
+E+ I+ YL+I +L YL++T++ + +V + F IE P
Sbjct: 87 NEISRSIITPTYLDIDSLLKYLSDTISVNKNSCNVRKITTFNSIEVRGVP 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,578,255
Number of Sequences: 62578
Number of extensions: 172319
Number of successful extensions: 376
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 345
Number of HSP's gapped (non-prelim): 16
length of query: 176
length of database: 14,973,337
effective HSP length: 92
effective length of query: 84
effective length of database: 9,216,161
effective search space: 774157524
effective search space used: 774157524
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.1 bits)