Query 030521
Match_columns 176
No_of_seqs 113 out of 765
Neff 7.5
Searched_HMMs 29240
Date Tue Mar 26 00:29:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030521.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030521hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v7d_A Suppressor of kinetocho 100.0 2.5E-54 8.5E-59 333.7 16.9 155 12-167 4-168 (169)
2 2p1m_A SKP1-like protein 1A; F 100.0 3.5E-52 1.2E-56 319.1 4.5 152 12-167 1-160 (160)
3 2ast_A S-phase kinase-associat 100.0 2.4E-48 8.2E-53 297.3 16.1 149 16-165 2-159 (159)
4 1fs1_B SKP1, cyclin A/CDK2-ass 100.0 7.8E-45 2.7E-49 272.9 12.6 132 16-152 3-141 (141)
5 1hv2_A Elongin C, ELC1; protei 100.0 5.1E-29 1.8E-33 176.3 8.7 99 12-117 1-99 (99)
6 1vcb_B Protein (elongin C); tu 99.9 3.3E-28 1.1E-32 175.7 9.0 104 5-117 7-112 (112)
7 2fnj_C Transcription elongatio 99.9 5.2E-27 1.8E-31 165.1 8.1 94 15-117 1-96 (96)
8 4ajy_C Transcription elongatio 99.9 3.8E-24 1.3E-28 150.5 8.4 93 16-117 3-97 (97)
9 2vkp_A BTB/POZ domain-containi 99.1 1.3E-09 4.6E-14 76.3 10.3 97 14-131 8-108 (109)
10 2yy9_A Zinc finger and BTB dom 99.0 5.3E-10 1.8E-14 81.9 6.1 99 15-138 26-125 (135)
11 3htm_A Speckle-type POZ protei 98.9 9.7E-09 3.3E-13 77.2 11.5 107 15-142 35-142 (172)
12 2if5_A Zinc finger and BTB dom 98.9 9.7E-09 3.3E-13 73.2 10.9 94 14-128 25-119 (120)
13 1buo_A POZ domain, protein (pr 98.9 1.3E-08 4.6E-13 72.8 10.8 93 14-132 28-121 (121)
14 1r29_A B-cell lymphoma 6 prote 98.9 2.4E-08 8.2E-13 71.9 10.8 94 14-129 29-124 (127)
15 4eoz_A Speckle-type POZ protei 98.8 6.2E-09 2.1E-13 76.2 5.9 102 15-137 26-128 (145)
16 2vpk_A Myoneurin; transcriptio 98.8 5.7E-08 1.9E-12 68.8 10.8 90 15-129 23-115 (116)
17 2q81_A MIZ-1 protein; BTB/POZ 98.8 3.6E-08 1.2E-12 70.4 9.7 89 15-129 28-117 (119)
18 3b84_A Zinc finger and BTB dom 98.8 1.7E-08 5.9E-13 72.1 8.1 91 15-130 25-116 (119)
19 2ppi_A Gigaxonin; BTB domain, 98.8 2.3E-08 8E-13 74.0 8.0 93 15-128 48-143 (144)
20 3ga1_A Nucleus accumbens-assoc 98.7 1.8E-08 6.2E-13 72.9 6.3 91 15-130 34-126 (129)
21 3i3n_A Kelch-like protein 11; 98.7 3.4E-08 1.2E-12 80.1 8.0 106 15-140 33-147 (279)
22 3hve_A Gigaxonin; ubiquitin, c 98.7 7.1E-08 2.4E-12 77.3 9.2 102 14-136 31-135 (256)
23 2z8h_A Transcription regulator 98.7 7.4E-08 2.5E-12 70.5 8.0 96 15-133 37-134 (138)
24 3hqi_A Speckle-type POZ protei 98.6 2.5E-07 8.4E-12 76.1 11.2 108 14-142 174-282 (312)
25 3ohu_A Transcription regulator 98.6 2.2E-08 7.4E-13 71.9 2.6 90 15-127 33-124 (125)
26 3m5b_A Zinc finger and BTB dom 98.4 1.9E-07 6.6E-12 66.9 4.4 86 15-130 31-117 (119)
27 3fkc_A Transcriptional regulat 98.4 1E-06 3.5E-11 62.6 7.7 83 15-122 32-115 (116)
28 2ihc_A Transcription regulator 98.4 2.1E-07 7.2E-12 66.8 3.6 91 15-128 30-122 (124)
29 3drz_A BTB/POZ domain-containi 93.5 0.54 1.9E-05 32.3 8.5 97 13-130 4-106 (107)
30 3drx_A BTB/POZ domain-containi 82.4 3.2 0.00011 32.0 6.3 99 12-131 9-113 (202)
31 2xf7_A GP23.1; viral protein; 64.4 8 0.00027 22.5 3.2 36 128-165 11-47 (51)
32 3tnt_A SARS coronavirus main p 62.4 19 0.00064 29.2 6.2 98 55-156 190-297 (306)
33 2k9n_A MYB24; R2R3 domain, DNA 53.9 17 0.00059 24.4 4.2 36 126-161 25-67 (107)
34 1h8a_C AMV V-MYB, MYB transfor 50.6 25 0.00086 24.3 4.8 37 125-161 50-93 (128)
35 1pd7_B MAD1; PAH2, SIN3, eukar 48.4 4.4 0.00015 20.7 0.3 12 105-116 5-16 (26)
36 3tlo_A 3CL-Pro, 3CLP, 3C-like 48.2 17 0.00058 29.4 3.8 97 55-156 190-294 (303)
37 1gv2_A C-MYB, MYB proto-oncoge 48.0 15 0.00052 24.5 3.1 36 126-161 28-70 (105)
38 3d23_B 3C-like proteinase; mai 44.8 39 0.0013 27.3 5.4 98 54-156 191-296 (302)
39 3osg_A MYB21; transcription-DN 41.1 35 0.0012 23.6 4.2 37 125-161 33-76 (126)
40 3zqc_A MYB3; transcription-DNA 39.7 16 0.00054 25.6 2.2 35 127-161 27-68 (131)
41 1wgx_A KIAA1903 protein; MYB D 39.7 19 0.00067 23.0 2.4 20 126-145 35-54 (73)
42 2cqq_A RSGI RUH-037, DNAJ homo 39.3 22 0.00074 22.5 2.6 19 126-145 35-53 (72)
43 1s1g_A Potassium voltage-gated 39.0 16 0.00055 25.6 2.1 92 13-127 11-107 (124)
44 4eef_G F-HB80.4, designed hema 37.6 8.1 0.00028 25.0 0.3 44 101-148 26-69 (74)
45 2q6f_A Fragment, infectious br 37.5 69 0.0024 25.9 5.8 98 54-155 189-299 (309)
46 1ug2_A 2610100B20RIK gene prod 34.4 30 0.001 23.2 2.7 21 125-145 58-78 (95)
47 3g5o_A Uncharacterized protein 32.5 86 0.0029 21.1 5.0 48 101-148 48-97 (108)
48 1lvo_A Replicase, hydrolase do 31.5 38 0.0013 27.3 3.3 99 54-156 188-293 (302)
49 1x41_A Transcriptional adaptor 30.9 38 0.0013 20.2 2.6 20 126-145 32-51 (60)
50 2eqr_A N-COR1, N-COR, nuclear 29.2 34 0.0012 20.6 2.2 20 126-145 35-54 (61)
51 2cjj_A Radialis; plant develop 29.1 33 0.0011 22.8 2.3 20 126-145 35-54 (93)
52 1h89_C C-MYB, MYB proto-oncoge 28.7 51 0.0018 23.6 3.5 36 126-161 82-124 (159)
53 2ki0_A DS119; beta-alpha-beta, 28.1 35 0.0012 18.1 1.8 12 151-162 13-24 (36)
54 1ni7_A ER75, hypothetical prot 28.1 71 0.0024 23.2 4.2 30 124-153 91-128 (155)
55 3htm_A Speckle-type POZ protei 28.0 37 0.0013 23.9 2.6 64 62-133 101-165 (172)
56 3few_X Colicin S4; cell lysis, 27.7 47 0.0016 28.4 3.4 42 124-165 164-206 (505)
57 3b3d_A YTBE protein, putative 27.7 74 0.0025 25.3 4.7 41 134-174 271-312 (314)
58 3dbh_I NEDD8; cell cycle, acti 27.4 54 0.0018 20.4 3.1 26 7-32 5-30 (88)
59 2qq4_A Iron-sulfur cluster bio 27.1 61 0.0021 22.9 3.6 37 108-144 53-90 (138)
60 2guz_B Mitochondrial import in 26.9 21 0.00072 22.1 0.9 34 135-171 1-37 (65)
61 4eo3_A Bacterioferritin comigr 26.6 16 0.00055 29.6 0.4 35 106-150 246-280 (322)
62 2nz0_B Potassium voltage-gated 26.5 18 0.0006 26.0 0.6 93 14-127 34-129 (140)
63 2yus_A SWI/SNF-related matrix- 26.4 49 0.0017 21.1 2.7 39 101-145 22-60 (79)
64 3i3n_A Kelch-like protein 11; 26.3 1E+02 0.0035 23.7 5.1 78 90-168 128-216 (279)
65 2eqx_A Kelch repeat and BTB do 25.7 46 0.0016 22.0 2.6 47 99-145 7-62 (105)
66 3g0m_A Cysteine desulfuration 25.5 60 0.002 23.2 3.3 28 125-152 85-120 (141)
67 1xjs_A NIFU-like protein; SR17 25.2 68 0.0023 22.9 3.6 38 108-145 55-93 (147)
68 1jr5_A 10 kDa anti-sigma facto 25.2 44 0.0015 22.2 2.3 31 136-169 50-80 (90)
69 3lvl_A NIFU-like protein; prot 25.2 59 0.002 22.7 3.2 37 108-144 53-90 (129)
70 2yum_A ZZZ3 protein, zinc fing 24.8 54 0.0018 20.3 2.7 20 125-144 36-55 (75)
71 2jsp_A Transcriptional regulat 24.3 33 0.0011 22.7 1.6 25 126-151 36-60 (87)
72 2cqr_A RSGI RUH-043, DNAJ homo 24.1 26 0.0009 22.2 1.0 21 125-145 44-64 (73)
73 1nn7_A Potassium channel KV4.2 24.1 21 0.00071 24.1 0.6 84 23-127 7-94 (105)
74 3kvt_A Potassium channel prote 23.7 29 0.00099 23.9 1.2 91 15-126 5-99 (115)
75 2r37_A Glutathione peroxidase 23.5 34 0.0012 25.5 1.8 31 1-31 1-35 (207)
76 2elk_A SPCC24B10.08C protein; 23.5 65 0.0022 19.0 2.7 20 125-144 32-52 (58)
77 2kw0_A CCMH protein; oxidoredu 23.4 55 0.0019 21.7 2.5 12 133-144 55-66 (90)
78 2ra2_A Putative lipoprotein; X 23.4 55 0.0019 20.4 2.4 18 12-29 1-18 (64)
79 1su0_B NIFU like protein ISCU; 23.3 88 0.003 22.7 3.9 38 108-145 54-92 (159)
80 2hl7_A Cytochrome C-type bioge 23.1 57 0.0019 21.3 2.5 12 133-144 58-69 (84)
81 3hve_A Gigaxonin; ubiquitin, c 22.5 81 0.0028 23.9 3.8 76 94-170 124-210 (256)
82 1vfr_A NAD(P)H\:FMN oxidoreduc 21.9 18 0.0006 26.7 -0.2 19 132-150 164-183 (218)
83 4b0z_A RPN12, 26S proteasome r 21.8 1E+02 0.0035 23.5 4.2 65 101-168 149-221 (229)
84 3hm5_A DNA methyltransferase 1 21.5 1E+02 0.0035 20.5 3.6 19 126-144 53-76 (93)
85 3d55_A Antitoxin, uncharacteri 21.5 51 0.0017 21.3 2.1 47 101-147 39-90 (91)
86 2lr8_A CAsp8-associated protei 26.8 20 0.00069 22.8 0.0 22 123-145 37-58 (70)
87 1y14_A B32, RPB4, DNA-directed 21.1 1.7E+02 0.0058 22.0 5.1 43 118-161 136-179 (187)
88 3kf9_B MLCK2, myosin light cha 20.7 36 0.0012 16.6 0.9 11 105-115 7-17 (22)
89 2cu7_A KIAA1915 protein; nucle 20.6 74 0.0025 19.6 2.7 21 125-145 31-51 (72)
90 3hou_D DNA-directed RNA polyme 20.4 1.9E+02 0.0066 22.3 5.4 43 118-161 170-213 (221)
91 1ofc_X ISWI protein; nuclear p 20.3 58 0.002 26.5 2.6 42 99-145 112-153 (304)
92 2c35_A Human RPB4, DNA-directe 20.2 2.4E+02 0.0083 20.1 7.6 42 119-161 101-143 (152)
93 1tc3_C Protein (TC3 transposas 20.1 1.1E+02 0.0037 15.9 3.1 17 131-147 18-34 (51)
No 1
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=100.00 E-value=2.5e-54 Score=333.65 Aligned_cols=155 Identities=36% Similarity=0.589 Sum_probs=133.2
Q ss_pred CCCCcEEEEeCCCCEEEecHHHHHHhHHHHHHHhcCCCC----CCCcccccCCCChHHHHHHHHHHHHhhhccCCC----
Q 030521 12 QATKKISLKTADGHLFEVEEPVAMEFEIVKSFFDENDDA----SEDTVVPLPNVSAAPLSYIIEFCRAHVEFRKKR---- 83 (176)
Q Consensus 12 ~~~~~i~L~s~DG~~f~V~~~~a~~S~~l~~ll~~~~~~----~~~~~Ipl~~v~s~~L~~Iie~c~~h~~~~~~~---- 83 (176)
|++++|+|+|+||++|.|++.+|.+|++|++|+++.+.+ ++..+||||+|++.+|++|++||+||+.++++.
T Consensus 4 m~~~~i~L~SsDG~~F~V~~~vA~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~~~ 83 (169)
T 3v7d_A 4 MVTSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDD 83 (169)
T ss_dssp --CCEEEEECTTCCEEEEEHHHHTTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTTTCCCCC----
T ss_pred CCCCeEEEEeCCCCEEEecHHHHHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccCCCcccccc
Confidence 667899999999999999999999999999999976542 123699999999999999999999999987542
Q ss_pred --CCccccchhhhhhccCCChHHHHHHHHhhhccchhhHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHHHh
Q 030521 84 --SPKQEVKTFNEEFGKSKSNDELKEMILVANYLNIKDMLDYLTETVANRIKNKSVEYVRKFFGIENDFTPEEEEAARKE 161 (176)
Q Consensus 84 --~~~~~~~~wd~eFl~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~iA~~i~gks~eeir~~f~i~~d~t~EEe~~i~~e 161 (176)
.....+++||++|++. ++..||+||.|||||+|++|+++||++||++|+||||+|||++|||++||||||+++||+|
T Consensus 84 ~~~~~~~i~~wD~~Fl~v-d~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ikgktpeeiR~~f~I~nd~t~eEe~~ir~e 162 (169)
T 3v7d_A 84 DSRKSAPVDSWDREFLKV-DQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRE 162 (169)
T ss_dssp ----CCCCCHHHHHHTCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCCCCCHHHHHHHHTT
T ss_pred cccccccccHHHHHHHcC-CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHHHh
Confidence 1234799999999998 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccC
Q 030521 162 YEWAFE 167 (176)
Q Consensus 162 ~~w~~~ 167 (176)
|+|+|+
T Consensus 163 n~W~~~ 168 (169)
T 3v7d_A 163 NEWAED 168 (169)
T ss_dssp C-----
T ss_pred cccccc
Confidence 999997
No 2
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=100.00 E-value=3.5e-52 Score=319.05 Aligned_cols=152 Identities=45% Similarity=0.744 Sum_probs=89.2
Q ss_pred CCCCcEEEEeCCCCEEEecHHHHHHhHHHHHHHhcCCCCCCCcccccCCCChHHHHHHHHHHHHhhhccCCC--------
Q 030521 12 QATKKISLKTADGHLFEVEEPVAMEFEIVKSFFDENDDASEDTVVPLPNVSAAPLSYIIEFCRAHVEFRKKR-------- 83 (176)
Q Consensus 12 ~~~~~i~L~s~DG~~f~V~~~~a~~S~~l~~ll~~~~~~~~~~~Ipl~~v~s~~L~~Iie~c~~h~~~~~~~-------- 83 (176)
|++++|+|+|+||+.|.|++.+|.+|++|++|+++.+.+ .+||||+|++.+|++|++||+||+.++++.
T Consensus 1 ~~~~~v~L~SsDg~~f~v~~~vA~~S~~ik~ml~~~~~~---~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~ 77 (160)
T 2p1m_A 1 MSAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVD---NGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAA 77 (160)
T ss_dssp -------CCC---------CHHHHTCTTTC---------------CCTTSCHHHHHHHHHC-------------------
T ss_pred CCCCEEEEEcCCCCEEEECHHHHHHhHHHHHHHHccCCC---CceeCCcCcHHHHHHHHHHHHHcccCCCcccccccccc
Confidence 457889999999999999999999999999999876443 389999999999999999999999875431
Q ss_pred CCccccchhhhhhccCCChHHHHHHHHhhhccchhhHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHHHhcc
Q 030521 84 SPKQEVKTFNEEFGKSKSNDELKEMILVANYLNIKDMLDYLTETVANRIKNKSVEYVRKFFGIENDFTPEEEEAARKEYE 163 (176)
Q Consensus 84 ~~~~~~~~wd~eFl~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~iA~~i~gks~eeir~~f~i~~d~t~EEe~~i~~e~~ 163 (176)
.....+++||++|++. +...||+|+.|||||+|++|+++||++||++|+|||++|||++|||++||||||+++||+||+
T Consensus 78 ~~~~~i~~wD~~Fl~v-d~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeir~~f~I~nd~t~eEe~~ir~en~ 156 (160)
T 2p1m_A 78 TSDDDLKAWDADFMKI-DQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQ 156 (160)
T ss_dssp ------------------------CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHHHHHHTTCCCCCCHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHcC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHHHhCc
Confidence 1235799999999997 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 030521 164 WAFE 167 (176)
Q Consensus 164 w~~~ 167 (176)
|+|+
T Consensus 157 w~~~ 160 (160)
T 2p1m_A 157 WAFE 160 (160)
T ss_dssp HHHC
T ss_pred cccC
Confidence 9986
No 3
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=100.00 E-value=2.4e-48 Score=297.30 Aligned_cols=149 Identities=40% Similarity=0.646 Sum_probs=133.5
Q ss_pred cEEEEeCCCCEEEecHHHHHHhHHHHHHHhcCCCC--CCCcccccCCCChHHHHHHHHHHHHhhhccCCC-------CCc
Q 030521 16 KISLKTADGHLFEVEEPVAMEFEIVKSFFDENDDA--SEDTVVPLPNVSAAPLSYIIEFCRAHVEFRKKR-------SPK 86 (176)
Q Consensus 16 ~i~L~s~DG~~f~V~~~~a~~S~~l~~ll~~~~~~--~~~~~Ipl~~v~s~~L~~Iie~c~~h~~~~~~~-------~~~ 86 (176)
.|+|+|+||+.|.|++.+|.+|++|++|+++.+.. ....+||||+|++.+|++|++||++|+.++++. ...
T Consensus 2 ~v~L~ssDg~~f~v~~~vA~~S~~i~~m~~~~~~~~e~~~~~Ipl~~V~~~iL~kViey~~~h~~~~~~~~~~~~~~~~~ 81 (159)
T 2ast_A 2 SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT 81 (159)
T ss_dssp EEEEECTTSCEEEEEHHHHHTCHHHHHHTTSSCSS------CEECTTSCHHHHHHHHHHHHHTTTCCC-----------C
T ss_pred eEEEEcCCCCEEEeCHHHHHHhHHHHHHHHhcCCcccccCCCcCCCCccHHHHHHHHHHHHHcCcCCCCcccccccccch
Confidence 39999999999999999999999999999974422 234689999999999999999999999876541 124
Q ss_pred cccchhhhhhccCCChHHHHHHHHhhhccchhhHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHHHhcccc
Q 030521 87 QEVKTFNEEFGKSKSNDELKEMILVANYLNIKDMLDYLTETVANRIKNKSVEYVRKFFGIENDFTPEEEEAARKEYEWA 165 (176)
Q Consensus 87 ~~~~~wd~eFl~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~iA~~i~gks~eeir~~f~i~~d~t~EEe~~i~~e~~w~ 165 (176)
..+++||++|++. +.+.|++|+.|||||+|++|+++||++||++|+|||++|||++|||++||||||+++||+||+|+
T Consensus 82 ~~i~~wD~~F~~i-d~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i~gkt~eeir~~f~I~~d~t~eEe~~ir~en~w~ 159 (159)
T 2ast_A 82 DDIPVWDQEFLKV-DQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWC 159 (159)
T ss_dssp CCCCHHHHHHTCS-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSSCCHHHHHHHTTCCCCSCTTHHHHHHHHTTTC
T ss_pred hhhhHHHHHHHcC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHHHhCCCC
Confidence 5799999999997 99999999999999999999999999999999999999999999999999999999999999996
No 4
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=100.00 E-value=7.8e-45 Score=272.93 Aligned_cols=132 Identities=39% Similarity=0.622 Sum_probs=110.4
Q ss_pred cEEEEeCCCCEEEecHHHHHHhHHHHHHHhcCCCCCCCcccccCCCChHHHHHHHHHHHHhhhccCCC-------CCccc
Q 030521 16 KISLKTADGHLFEVEEPVAMEFEIVKSFFDENDDASEDTVVPLPNVSAAPLSYIIEFCRAHVEFRKKR-------SPKQE 88 (176)
Q Consensus 16 ~i~L~s~DG~~f~V~~~~a~~S~~l~~ll~~~~~~~~~~~Ipl~~v~s~~L~~Iie~c~~h~~~~~~~-------~~~~~ 88 (176)
.|+|+|+||+.|.|++.+|.+|++|++|+++.+ + .+||||+|++.+|++|++||+||+.++++. .....
T Consensus 3 ~v~L~SsDg~~f~v~~~vA~~S~~ik~ml~~~~-~---~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~ 78 (141)
T 1fs1_B 3 SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLG-M---DPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDD 78 (141)
T ss_dssp EEEEECTTSCEEEEEGGGGGTCHHHHHHHHHTC-C---SSEECTTCCHHHHHHHHHHHHHHTTCC---------------
T ss_pred eEEEEeCCCCEEEecHHHHHHhHHHHHHHHhcC-C---CceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhh
Confidence 599999999999999999999999999999864 2 389999999999999999999999876431 12457
Q ss_pred cchhhhhhccCCChHHHHHHHHhhhccchhhHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCH
Q 030521 89 VKTFNEEFGKSKSNDELKEMILVANYLNIKDMLDYLTETVANRIKNKSVEYVRKFFGIENDFTP 152 (176)
Q Consensus 89 ~~~wd~eFl~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~iA~~i~gks~eeir~~f~i~~d~t~ 152 (176)
+++||++|++. +.+.|++|+.|||||+|++|+++||++||++|+|||++|||++|||++||||
T Consensus 79 i~~wD~~F~~v-d~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeiR~~f~I~~d~tp 141 (141)
T 1fs1_B 79 IPVWDQEFLKV-DQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTE 141 (141)
T ss_dssp --HHHHHHTCS-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHHHHHTC-------
T ss_pred hhHHHHHHHhC-CHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCC
Confidence 99999999997 9999999999999999999999999999999999999999999999999997
No 5
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=99.96 E-value=5.1e-29 Score=176.34 Aligned_cols=99 Identities=17% Similarity=0.303 Sum_probs=85.8
Q ss_pred CCCCcEEEEeCCCCEEEecHHHHHHhHHHHHHHhcCCCCCCCcccccCCCChHHHHHHHHHHHHhhhccCCCCCccccch
Q 030521 12 QATKKISLKTADGHLFEVEEPVAMEFEIVKSFFDENDDASEDTVVPLPNVSAAPLSYIIEFCRAHVEFRKKRSPKQEVKT 91 (176)
Q Consensus 12 ~~~~~i~L~s~DG~~f~V~~~~a~~S~~l~~ll~~~~~~~~~~~Ipl~~v~s~~L~~Iie~c~~h~~~~~~~~~~~~~~~ 91 (176)
|++++|+|+|+||++|.|++.+|.+|++|++|+++ +.++...+||||+|++.+|+||++||+||+.++.+......+++
T Consensus 1 m~~~~v~L~SsDg~~f~V~~~vA~~S~~ik~ml~~-~~e~~~~~Iplp~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~ 79 (99)
T 1hv2_A 1 MSQDFVTLVSKDDKEYEISRSAAMISPTLKAMIEG-PFRESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPE 79 (99)
T ss_dssp CCCSEEEEEETTTEEEEEEHHHHTTCHHHHHHHHS-STTTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCC
T ss_pred CCCcEEEEEecCCCEEEECHHHHHHhHHHHHHHhc-ccccCCCceecCCcCHHHHHHHHHHHHHhcccCCCccccccCCC
Confidence 67899999999999999999999999999999998 33333469999999999999999999999987643233456888
Q ss_pred hhhhhccCCChHHHHHHHHhhhccch
Q 030521 92 FNEEFGKSKSNDELKEMILVANYLNI 117 (176)
Q Consensus 92 wd~eFl~~~~~~~l~~Ll~AA~~L~I 117 (176)
| +. ++..||+|+.|||||+|
T Consensus 80 w-----~v-d~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 80 F-----EI-PTEMSLELLLAADYLSI 99 (99)
T ss_dssp C-----CC-CHHHHHHHHHHHHHHCC
T ss_pred c-----cC-CHHHHHHHHHHHHHhCc
Confidence 8 45 99999999999999997
No 6
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=99.95 E-value=3.3e-28 Score=175.74 Aligned_cols=104 Identities=19% Similarity=0.361 Sum_probs=80.5
Q ss_pred cccccCcCCCCcEEEEeCCCCEEEecHHHHHHhHHHHHHHhcCCC--CCCCcccccCCCChHHHHHHHHHHHHhhhccCC
Q 030521 5 SSSSCSAQATKKISLKTADGHLFEVEEPVAMEFEIVKSFFDENDD--ASEDTVVPLPNVSAAPLSYIIEFCRAHVEFRKK 82 (176)
Q Consensus 5 ~~~~~~~~~~~~i~L~s~DG~~f~V~~~~a~~S~~l~~ll~~~~~--~~~~~~Ipl~~v~s~~L~~Iie~c~~h~~~~~~ 82 (176)
.-++|.+.++++|+|+|+||++|.|++.+|++|++|++|+++.+. +....+||||+|++.+|+||++||+||+.++.
T Consensus 7 ~~~~~~~~~~~~v~L~SsDG~~F~V~~~~A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~~~- 85 (112)
T 1vcb_B 7 TYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTN- 85 (112)
T ss_dssp ----------CEEEEECTTSCEEEEEHHHHHTSHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHHHHSS-
T ss_pred ccCCccCCCCCEEEEEcCCCCEEEECHHHHHHhHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhccC-
Confidence 456788899999999999999999999999999999999997654 22346999999999999999999999998753
Q ss_pred CCCccccchhhhhhccCCChHHHHHHHHhhhccch
Q 030521 83 RSPKQEVKTFNEEFGKSKSNDELKEMILVANYLNI 117 (176)
Q Consensus 83 ~~~~~~~~~wd~eFl~~~~~~~l~~Ll~AA~~L~I 117 (176)
+...+++| +. ++..||+|+.|||||+|
T Consensus 86 --~~~~i~~w-----~v-d~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 86 --SSTEIPEF-----PI-APEIALELLMAANFLDC 112 (112)
T ss_dssp --CSSCCCCC-----CC-CHHHHHHHHHHHHHHTC
T ss_pred --CcCCCCCc-----cc-CHHHHHHHHHHHHHhCc
Confidence 23467888 45 99999999999999997
No 7
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=99.94 E-value=5.2e-27 Score=165.11 Aligned_cols=94 Identities=20% Similarity=0.354 Sum_probs=79.6
Q ss_pred CcEEEEeCCCCEEEecHHHHHHhHHHHHHHhcCCC--CCCCcccccCCCChHHHHHHHHHHHHhhhccCCCCCccccchh
Q 030521 15 KKISLKTADGHLFEVEEPVAMEFEIVKSFFDENDD--ASEDTVVPLPNVSAAPLSYIIEFCRAHVEFRKKRSPKQEVKTF 92 (176)
Q Consensus 15 ~~i~L~s~DG~~f~V~~~~a~~S~~l~~ll~~~~~--~~~~~~Ipl~~v~s~~L~~Iie~c~~h~~~~~~~~~~~~~~~w 92 (176)
.+|+|+|+||++|.|++.+|++|++|++|+++.+. +....+||||+|++.+|++|++||+||+.++. +...+++|
T Consensus 1 ~~v~L~SsDg~~f~V~~~~A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~---~~~~i~~w 77 (96)
T 2fnj_C 1 MYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTN---SSTEIPEF 77 (96)
T ss_dssp CEEEEECTTSCEEEEEHHHHTTSHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHHHHHS---CCSCCCCC
T ss_pred CeEEEEecCCCEEEeCHHHHHHhHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHccccCC---CcccCCCc
Confidence 47999999999999999999999999999998654 22346999999999999999999999998753 23467888
Q ss_pred hhhhccCCChHHHHHHHHhhhccch
Q 030521 93 NEEFGKSKSNDELKEMILVANYLNI 117 (176)
Q Consensus 93 d~eFl~~~~~~~l~~Ll~AA~~L~I 117 (176)
+. ++..||+|+.|||||+|
T Consensus 78 -----~v-d~~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 78 -----PI-APEIALELLMAANFLDC 96 (96)
T ss_dssp -----CC-CTTTHHHHHHHHHHHTC
T ss_pred -----cc-CHHHHHHHHHHHHHhCc
Confidence 45 99999999999999997
No 8
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.90 E-value=3.8e-24 Score=150.53 Aligned_cols=93 Identities=20% Similarity=0.362 Sum_probs=78.6
Q ss_pred cEEEEeCCCCEEEecHHHHHHhHHHHHHHhcCCC--CCCCcccccCCCChHHHHHHHHHHHHhhhccCCCCCccccchhh
Q 030521 16 KISLKTADGHLFEVEEPVAMEFEIVKSFFDENDD--ASEDTVVPLPNVSAAPLSYIIEFCRAHVEFRKKRSPKQEVKTFN 93 (176)
Q Consensus 16 ~i~L~s~DG~~f~V~~~~a~~S~~l~~ll~~~~~--~~~~~~Ipl~~v~s~~L~~Iie~c~~h~~~~~~~~~~~~~~~wd 93 (176)
+|+|+|+||++|.|++.+|.+|++|++|+++.+. +....+||||+|++.+|++|++||+||+.++. ....+++|+
T Consensus 3 ~v~L~SsDg~~F~v~r~vA~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~---~~~~i~~~~ 79 (97)
T 4ajy_C 3 YVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTN---SSTEIPEFP 79 (97)
T ss_dssp EEEEECTTCCEEEEEHHHHTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTT---CCSCCCCCC
T ss_pred EEEEEecCCcEEEecHHHHHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCC---CcCCCCcCc
Confidence 7999999999999999999999999999997543 22356999999999999999999999998753 234688883
Q ss_pred hhhccCCChHHHHHHHHhhhccch
Q 030521 94 EEFGKSKSNDELKEMILVANYLNI 117 (176)
Q Consensus 94 ~eFl~~~~~~~l~~Ll~AA~~L~I 117 (176)
. +++.+++|+.|||||+.
T Consensus 80 -----i-~~~~l~eLl~AAnyL~~ 97 (97)
T 4ajy_C 80 -----I-APEIALELLMAANFLDC 97 (97)
T ss_dssp -----C-CGGGHHHHHHHHHHHTC
T ss_pred -----C-CHHHHHHHHHHHhhhCC
Confidence 5 89999999999999983
No 9
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.07 E-value=1.3e-09 Score=76.31 Aligned_cols=97 Identities=7% Similarity=0.122 Sum_probs=77.8
Q ss_pred CCcEEEEeCCC---CEEEecHHHH-HHhHHHHHHHhcCCCCCCCcccccCCCChHHHHHHHHHHHHhhhccCCCCCcccc
Q 030521 14 TKKISLKTADG---HLFEVEEPVA-MEFEIVKSFFDENDDASEDTVVPLPNVSAAPLSYIIEFCRAHVEFRKKRSPKQEV 89 (176)
Q Consensus 14 ~~~i~L~s~DG---~~f~V~~~~a-~~S~~l~~ll~~~~~~~~~~~Ipl~~v~s~~L~~Iie~c~~h~~~~~~~~~~~~~ 89 (176)
-+.++|+..+| +.|.+++.++ ..|++++.|+.+...+.. ..|.+++++..+++.+++|++...-
T Consensus 8 ~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l~~~~~~~f~~~l~~iYt~~~----------- 75 (109)
T 2vkp_A 8 MADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIPDVEPAAFLILLKYMYSDEI----------- 75 (109)
T ss_dssp TCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-CEEEETTSCHHHHHHHHHHHHHCCC-----------
T ss_pred cccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEeCCCCHHHHHHHHHHHcCCCc-----------
Confidence 35688888886 9999999996 579999999986533333 6899999999999999999996331
Q ss_pred chhhhhhccCCChHHHHHHHHhhhccchhhHHHHHHHHHHHH
Q 030521 90 KTFNEEFGKSKSNDELKEMILVANYLNIKDMLDYLTETVANR 131 (176)
Q Consensus 90 ~~wd~eFl~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~iA~~ 131 (176)
.. +.+.+.+|+.+|++|+++.|.+.|..++...
T Consensus 76 --------~~-~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~ 108 (109)
T 2vkp_A 76 --------DL-EADTVLATLYAAKKYIVPALAKACVNFLETS 108 (109)
T ss_dssp --------CC-CTTTHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------cC-CHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh
Confidence 12 5567899999999999999999999999764
No 10
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.00 E-value=5.3e-10 Score=81.92 Aligned_cols=99 Identities=12% Similarity=0.181 Sum_probs=73.8
Q ss_pred CcEEEEeCCCCEEEecHHHH-HHhHHHHHHHhcCCCCCCCcccccCCCChHHHHHHHHHHHHhhhccCCCCCccccchhh
Q 030521 15 KKISLKTADGHLFEVEEPVA-MEFEIVKSFFDENDDASEDTVVPLPNVSAAPLSYIIEFCRAHVEFRKKRSPKQEVKTFN 93 (176)
Q Consensus 15 ~~i~L~s~DG~~f~V~~~~a-~~S~~l~~ll~~~~~~~~~~~Ipl~~v~s~~L~~Iie~c~~h~~~~~~~~~~~~~~~wd 93 (176)
..|+|+. +|+.|.+++.++ ..|++++.|+.... ...|.|++++..+++.+++|++...-
T Consensus 26 ~Dv~l~v-~~~~f~aHk~vLaa~S~yF~~mf~~~~----~~~i~l~~~~~~~f~~lL~fiYtg~~--------------- 85 (135)
T 2yy9_A 26 CDATLDV-GGLVFKAHWSVLACCSHFFQRIYGDGT----GGSVVLPAGFAEIFGLLLDFFYTGHL--------------- 85 (135)
T ss_dssp CCEEEEE-TTEEEEECHHHHHHHCHHHHHTCC--------CCEEECGGGHHHHHHHHHHHHHSCC---------------
T ss_pred cceEEEE-CCEEEehHHHHHHHhCHHHHHHHcCCC----CCeEEeCCCCHHHHHHHHHHHhCCCC---------------
Confidence 4577775 689999999985 57999999998643 23789999999999999999997431
Q ss_pred hhhccCCChHHHHHHHHhhhccchhhHHHHHHHHHHHHHcCCCHH
Q 030521 94 EEFGKSKSNDELKEMILVANYLNIKDMLDYLTETVANRIKNKSVE 138 (176)
Q Consensus 94 ~eFl~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~iA~~i~gks~e 138 (176)
.. +.+.+.+|+.||++|+|+.|.+.|++++...+.++++.
T Consensus 86 ----~i-~~~~v~~ll~~A~~l~i~~L~~~C~~~l~~~l~~~~~~ 125 (135)
T 2yy9_A 86 ----AL-TSGNRDQVLLAAKELRVPEAVELCQSFQPQTSVGQAQS 125 (135)
T ss_dssp ----CC-CTTTHHHHHHHHHHTTCHHHHHHHHHCCC---------
T ss_pred ----CC-CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccCCCCC
Confidence 12 55668999999999999999999999999988887653
No 11
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=98.94 E-value=9.7e-09 Score=77.19 Aligned_cols=107 Identities=8% Similarity=0.185 Sum_probs=86.3
Q ss_pred CcEEEEeCCCCEEEecHHHH-HHhHHHHHHHhcCCCCCCCcccccCCCChHHHHHHHHHHHHhhhccCCCCCccccchhh
Q 030521 15 KKISLKTADGHLFEVEEPVA-MEFEIVKSFFDENDDASEDTVVPLPNVSAAPLSYIIEFCRAHVEFRKKRSPKQEVKTFN 93 (176)
Q Consensus 15 ~~i~L~s~DG~~f~V~~~~a-~~S~~l~~ll~~~~~~~~~~~Ipl~~v~s~~L~~Iie~c~~h~~~~~~~~~~~~~~~wd 93 (176)
..++|+. +|+.|.+++.++ ..|++++.++.....+.....|.+++++..+++.+++|++...-
T Consensus 35 ~Dv~l~v-~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~Yt~~~--------------- 98 (172)
T 3htm_A 35 TDCCLCV-AGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKA--------------- 98 (172)
T ss_dssp CCEEEEE-TTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHHHHSCC---------------
T ss_pred cceEEEE-CCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCCCHHHHHHHHHHHhCCCC---------------
Confidence 4577776 689999999996 56999999998654333345899999999999999999986432
Q ss_pred hhhccCCChHHHHHHHHhhhccchhhHHHHHHHHHHHHHcCCCHHHHHH
Q 030521 94 EEFGKSKSNDELKEMILVANYLNIKDMLDYLTETVANRIKNKSVEYVRK 142 (176)
Q Consensus 94 ~eFl~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~iA~~i~gks~eeir~ 142 (176)
.. +.+.+.+|+.+|++|+++.|.+.|..++...+...+.-++..
T Consensus 99 ----~~-~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~ 142 (172)
T 3htm_A 99 ----PN-LDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILI 142 (172)
T ss_dssp ----TT-GGGTHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTTHHHHHH
T ss_pred ----CC-cHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 12 456688999999999999999999999998777777665543
No 12
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=98.94 E-value=9.7e-09 Score=73.19 Aligned_cols=94 Identities=16% Similarity=0.244 Sum_probs=74.5
Q ss_pred CCcEEEEeCCCCEEEecHHHH-HHhHHHHHHHhcCCCCCCCcccccCCCChHHHHHHHHHHHHhhhccCCCCCccccchh
Q 030521 14 TKKISLKTADGHLFEVEEPVA-MEFEIVKSFFDENDDASEDTVVPLPNVSAAPLSYIIEFCRAHVEFRKKRSPKQEVKTF 92 (176)
Q Consensus 14 ~~~i~L~s~DG~~f~V~~~~a-~~S~~l~~ll~~~~~~~~~~~Ipl~~v~s~~L~~Iie~c~~h~~~~~~~~~~~~~~~w 92 (176)
-..++|+. +|+.|.+++.++ ..|++++.++.+...+.....|.+++++..+++.+++|++...-
T Consensus 25 ~~Dv~l~v-~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll~~~Yt~~~-------------- 89 (120)
T 2if5_A 25 LCDVVILV-EGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTATL-------------- 89 (120)
T ss_dssp SCCEEEEE-TTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSSCHHHHHHHHHHHHHSCC--------------
T ss_pred CCCeEEEE-CCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCCCHHHHHHHHHHHcCCCC--------------
Confidence 34577776 589999999996 46999999998654333346889999999999999999996331
Q ss_pred hhhhccCCChHHHHHHHHhhhccchhhHHHHHHHHH
Q 030521 93 NEEFGKSKSNDELKEMILVANYLNIKDMLDYLTETV 128 (176)
Q Consensus 93 d~eFl~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~i 128 (176)
.. +.+.+.+|+.||++|+|++|.+.|.+++
T Consensus 90 -----~~-~~~~~~~ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 90 -----TV-STANVGDILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp -----CC-CGGGHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----cc-CHHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 12 4567899999999999999999999875
No 13
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=98.91 E-value=1.3e-08 Score=72.78 Aligned_cols=93 Identities=14% Similarity=0.245 Sum_probs=77.0
Q ss_pred CCcEEEEeCCCCEEEecHHHH-HHhHHHHHHHhcCCCCCCCcccccCCCChHHHHHHHHHHHHhhhccCCCCCccccchh
Q 030521 14 TKKISLKTADGHLFEVEEPVA-MEFEIVKSFFDENDDASEDTVVPLPNVSAAPLSYIIEFCRAHVEFRKKRSPKQEVKTF 92 (176)
Q Consensus 14 ~~~i~L~s~DG~~f~V~~~~a-~~S~~l~~ll~~~~~~~~~~~Ipl~~v~s~~L~~Iie~c~~h~~~~~~~~~~~~~~~w 92 (176)
-..++|+. +|+.|.+++.++ ..|++++.++... ...|.+++++..+++.+++|++.-.-
T Consensus 28 ~~Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~~~~~~~f~~ll~~~Ytg~~-------------- 87 (121)
T 1buo_A 28 LCDVVIMV-DSQEFHAHRTVLACTSKMFEILFHRN-----SQHYTLDFLSPKTFQQILEYAYTATL-------------- 87 (121)
T ss_dssp TCCEEEEE-SSCEEEECHHHHHHHCHHHHHHTTSC-----CSEEEECSSCHHHHHHHHHHHHHSCC--------------
T ss_pred CCCEEEEE-CCEEEehhHHHHhhcCHHHHHHHcCC-----CcEEEeCCCCHHHHHHHHHhhcCCCc--------------
Confidence 34577776 589999999995 6799999999853 23789999999999999999996331
Q ss_pred hhhhccCCChHHHHHHHHhhhccchhhHHHHHHHHHHHHH
Q 030521 93 NEEFGKSKSNDELKEMILVANYLNIKDMLDYLTETVANRI 132 (176)
Q Consensus 93 d~eFl~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~iA~~i 132 (176)
.. +.+.+.+|+.||++|+++.|.+.|..++...|
T Consensus 88 -----~~-~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~I 121 (121)
T 1buo_A 88 -----QA-KAEDLDDLLYAAEILEIEYLEEQCLKMLETIQ 121 (121)
T ss_dssp -----CC-CGGGHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred -----CC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHhC
Confidence 12 45668999999999999999999999997654
No 14
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=98.87 E-value=2.4e-08 Score=71.90 Aligned_cols=94 Identities=13% Similarity=0.259 Sum_probs=77.1
Q ss_pred CCcEEEEeCCCCEEEecHHHH-HHhHHHHHHHhcCCCCCCCccccc-CCCChHHHHHHHHHHHHhhhccCCCCCccccch
Q 030521 14 TKKISLKTADGHLFEVEEPVA-MEFEIVKSFFDENDDASEDTVVPL-PNVSAAPLSYIIEFCRAHVEFRKKRSPKQEVKT 91 (176)
Q Consensus 14 ~~~i~L~s~DG~~f~V~~~~a-~~S~~l~~ll~~~~~~~~~~~Ipl-~~v~s~~L~~Iie~c~~h~~~~~~~~~~~~~~~ 91 (176)
-..++|+. +|+.|.+++.++ ..|++++.|+.....+ ....|.| ++++..+++.+++|++...-
T Consensus 29 ~~Dv~l~v-~~~~~~aHk~iLaa~S~~F~~~f~~~~~e-~~~~i~l~~~~~~~~f~~ll~~~Ytg~~------------- 93 (127)
T 1r29_A 29 LTDVVIVV-SREQFRAHKTVLMACSGLFYSIFTDQLKR-NLSVINLDPEINPEGFNILLDFMYTSRL------------- 93 (127)
T ss_dssp SCCEEEEE-TTEEEEECHHHHHHHCHHHHHHHTSTTTT-TCSEEECCTTSCHHHHHHHHHHHHHSCC-------------
T ss_pred CCCEEEEE-CCEEEehHHHHHHHhCHHHHHHhcCCccC-CCCEEEeCCCCCHHHHHHHHHHHcCCCc-------------
Confidence 34577776 589999999996 6799999999865443 3468889 89999999999999986331
Q ss_pred hhhhhccCCChHHHHHHHHhhhccchhhHHHHHHHHHH
Q 030521 92 FNEEFGKSKSNDELKEMILVANYLNIKDMLDYLTETVA 129 (176)
Q Consensus 92 wd~eFl~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~iA 129 (176)
.. +.+.+.+|+.||++|+|+.|.+.|..++.
T Consensus 94 ------~~-~~~~~~~ll~~A~~~~i~~L~~~c~~~l~ 124 (127)
T 1r29_A 94 ------NL-REGNIMAVMATAMYLQMEHVVDTCRKFIK 124 (127)
T ss_dssp ------CC-CTTTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------Cc-CHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 12 45678999999999999999999999885
No 15
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=98.80 E-value=6.2e-09 Score=76.17 Aligned_cols=102 Identities=9% Similarity=0.207 Sum_probs=74.6
Q ss_pred CcEEEEeCCCCEEEecHHHH-HHhHHHHHHHhcCCCCCCCcccccCCCChHHHHHHHHHHHHhhhccCCCCCccccchhh
Q 030521 15 KKISLKTADGHLFEVEEPVA-MEFEIVKSFFDENDDASEDTVVPLPNVSAAPLSYIIEFCRAHVEFRKKRSPKQEVKTFN 93 (176)
Q Consensus 15 ~~i~L~s~DG~~f~V~~~~a-~~S~~l~~ll~~~~~~~~~~~Ipl~~v~s~~L~~Iie~c~~h~~~~~~~~~~~~~~~wd 93 (176)
..++|+. +|+.|.+++.++ ..|++++.++.....+.....|.+++++..+++.+++|++...-
T Consensus 26 ~Dv~l~v-~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~--------------- 89 (145)
T 4eoz_A 26 TDCCLCV-AGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKA--------------- 89 (145)
T ss_dssp CCEEEEE-TTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHHHSCC---------------
T ss_pred cceEEEE-CCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhccCcc---------------
Confidence 4577776 689999999996 67999999998643221234789999999999999999996432
Q ss_pred hhhccCCChHHHHHHHHhhhccchhhHHHHHHHHHHHHHcCCCH
Q 030521 94 EEFGKSKSNDELKEMILVANYLNIKDMLDYLTETVANRIKNKSV 137 (176)
Q Consensus 94 ~eFl~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~iA~~i~gks~ 137 (176)
.. +.+.+.+|+.+|++|+++.|.+.|..++...+...+.
T Consensus 90 ----~~-~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~ 128 (145)
T 4eoz_A 90 ----PN-LDKMADDLLAAADKYALERLKVMCEDALCSNLSVENA 128 (145)
T ss_dssp ----TT-GGGTHHHHHHHHHHTTCHHHHHHHHCC----------
T ss_pred ----CC-cHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCHHHH
Confidence 12 4466789999999999999999999999876655444
No 16
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=98.80 E-value=5.7e-08 Score=68.82 Aligned_cols=90 Identities=16% Similarity=0.199 Sum_probs=72.6
Q ss_pred CcEEEEeCCCCEEEecHHHH-HHhHHHHHHHhcCCCCCCCcccccC--CCChHHHHHHHHHHHHhhhccCCCCCccccch
Q 030521 15 KKISLKTADGHLFEVEEPVA-MEFEIVKSFFDENDDASEDTVVPLP--NVSAAPLSYIIEFCRAHVEFRKKRSPKQEVKT 91 (176)
Q Consensus 15 ~~i~L~s~DG~~f~V~~~~a-~~S~~l~~ll~~~~~~~~~~~Ipl~--~v~s~~L~~Iie~c~~h~~~~~~~~~~~~~~~ 91 (176)
..++|+. +|+.|.+++.++ ..|++++.|+.... ...|.|+ +++..+++.+++|++.-.-
T Consensus 23 ~Dv~l~v-~~~~~~aHk~vLaa~S~yF~~~f~~~~----~~~i~l~~~~~~~~~f~~ll~~~Yt~~~------------- 84 (116)
T 2vpk_A 23 CDCTIVI-GEFQFKAHRNVLASFSEYFGAIYRSTS----ENNVFLDQSQVKADGFQKLLEFIYTGTL------------- 84 (116)
T ss_dssp CCEEEEE-TTEEEEECHHHHHHHCHHHHHHHTTCC----CSCEECCTTTCCHHHHHHHHHHHHHSCC-------------
T ss_pred CcEEEEE-CCEEEeccHHHHhhcCHHHHHHHcCCC----CCeEEeecCCCCHHHHHHHHHHHcCCCc-------------
Confidence 4577776 589999999996 67999999998652 1245555 9999999999999996331
Q ss_pred hhhhhccCCChHHHHHHHHhhhccchhhHHHHHHHHHH
Q 030521 92 FNEEFGKSKSNDELKEMILVANYLNIKDMLDYLTETVA 129 (176)
Q Consensus 92 wd~eFl~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~iA 129 (176)
.. +.+.+.+|+.||++|+|+.|.+.|+.++.
T Consensus 85 ------~~-~~~~v~~ll~~A~~~~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 85 ------NL-DSWNVKEIHQAADYLKVEEVVTKCKIKME 115 (116)
T ss_dssp ------CC-CTTTHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred ------cc-CHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 12 45678999999999999999999999873
No 17
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=98.80 E-value=3.6e-08 Score=70.42 Aligned_cols=89 Identities=22% Similarity=0.312 Sum_probs=73.7
Q ss_pred CcEEEEeCCCCEEEecHHHH-HHhHHHHHHHhcCCCCCCCcccccCCCChHHHHHHHHHHHHhhhccCCCCCccccchhh
Q 030521 15 KKISLKTADGHLFEVEEPVA-MEFEIVKSFFDENDDASEDTVVPLPNVSAAPLSYIIEFCRAHVEFRKKRSPKQEVKTFN 93 (176)
Q Consensus 15 ~~i~L~s~DG~~f~V~~~~a-~~S~~l~~ll~~~~~~~~~~~Ipl~~v~s~~L~~Iie~c~~h~~~~~~~~~~~~~~~wd 93 (176)
+.++|+. +|+.|.+++.++ ..|++++.|+.+. ...|.+++++..+++.+++|++.-.-
T Consensus 28 ~Dv~l~v-~~~~~~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~~~~~~~f~~ll~~~Ytg~~--------------- 86 (119)
T 2q81_A 28 CDCTFVV-DGVHFKAHKAVLAACSEYFKMLFVDQ-----KDVVHLDISNAAGLGQVLEFMYTAKL--------------- 86 (119)
T ss_dssp CCEEEEE-TTEEEEECHHHHHHHCHHHHHHHHHC-----CSGGGGGGCCHHHHHHHHHHHHHSCC---------------
T ss_pred cceEEEE-CCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeCCCCHHHHHHHHHHHcCCCC---------------
Confidence 4577775 689999999996 5699999999863 23788888999999999999996331
Q ss_pred hhhccCCChHHHHHHHHhhhccchhhHHHHHHHHHH
Q 030521 94 EEFGKSKSNDELKEMILVANYLNIKDMLDYLTETVA 129 (176)
Q Consensus 94 ~eFl~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~iA 129 (176)
.. +.+.+.+|+.||++|+|+.|.+.|+.+++
T Consensus 87 ----~i-~~~~~~~ll~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 87 ----SL-SPENVDDVLAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp ----CC-CTTTHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred ----cc-CHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 12 45568999999999999999999999874
No 18
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=98.80 E-value=1.7e-08 Score=72.07 Aligned_cols=91 Identities=14% Similarity=0.216 Sum_probs=73.7
Q ss_pred CcEEEEeCCCCEEEecHHHH-HHhHHHHHHHhcCCCCCCCcccccCCCChHHHHHHHHHHHHhhhccCCCCCccccchhh
Q 030521 15 KKISLKTADGHLFEVEEPVA-MEFEIVKSFFDENDDASEDTVVPLPNVSAAPLSYIIEFCRAHVEFRKKRSPKQEVKTFN 93 (176)
Q Consensus 15 ~~i~L~s~DG~~f~V~~~~a-~~S~~l~~ll~~~~~~~~~~~Ipl~~v~s~~L~~Iie~c~~h~~~~~~~~~~~~~~~wd 93 (176)
..++|+. +|+.|.+++.++ ..|++++.|+.... ...|.|++++..+++.+++|++...-
T Consensus 25 ~Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~~----~~~i~l~~~~~~~f~~ll~~iYtg~~--------------- 84 (119)
T 3b84_A 25 CDATLDV-GGLVFKAHWSVLACCSHFFQSLYGDGS----GGSVVLPAGFAEIFGLLLDFFYTGHL--------------- 84 (119)
T ss_dssp CCEEEEE-TTEEEEECHHHHHHHCHHHHHHHTTTT----CCCEEECGGGHHHHHHHHHHHHHSCC---------------
T ss_pred cceEEEE-CCEEEEeeHHHHhhcCHHHHHHHCCCC----CCeEEeCCCCHHHHHHHHHHHcCCCC---------------
Confidence 4577775 689999999996 56999999998643 23789999999999999999996331
Q ss_pred hhhccCCChHHHHHHHHhhhccchhhHHHHHHHHHHH
Q 030521 94 EEFGKSKSNDELKEMILVANYLNIKDMLDYLTETVAN 130 (176)
Q Consensus 94 ~eFl~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~iA~ 130 (176)
.. +.+.+.+|+.||++|+|+.|.+.|+.++..
T Consensus 85 ----~~-~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~ 116 (119)
T 3b84_A 85 ----AL-TSGNRDQVLLAARELRVPEAVELCQSFKPK 116 (119)
T ss_dssp ----CC-CTTTHHHHHHHHHHTTCHHHHHHHHHCC--
T ss_pred ----cc-CHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 12 445688999999999999999999988753
No 19
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=98.77 E-value=2.3e-08 Score=73.95 Aligned_cols=93 Identities=14% Similarity=0.223 Sum_probs=74.1
Q ss_pred CcEEEEeCCCCEEEecHHHH-HHhHHHHHHHhcCCCC--CCCcccccCCCChHHHHHHHHHHHHhhhccCCCCCccccch
Q 030521 15 KKISLKTADGHLFEVEEPVA-MEFEIVKSFFDENDDA--SEDTVVPLPNVSAAPLSYIIEFCRAHVEFRKKRSPKQEVKT 91 (176)
Q Consensus 15 ~~i~L~s~DG~~f~V~~~~a-~~S~~l~~ll~~~~~~--~~~~~Ipl~~v~s~~L~~Iie~c~~h~~~~~~~~~~~~~~~ 91 (176)
..++|+. +|+.|.+.+.++ ..|++++.|+...... .....|.|++++..+++.+++|++.-.-
T Consensus 48 ~Dv~l~v-~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiYtg~~------------- 113 (144)
T 2ppi_A 48 CDAHLVL-DGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQI------------- 113 (144)
T ss_dssp CCEEEEE-TTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSCHHHHHHHHHHHTTSCC-------------
T ss_pred cceEEEE-CCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCCHHHHHHHHHHHhCCCC-------------
Confidence 4577776 689999999996 4799999999865322 2345899999999999999999984221
Q ss_pred hhhhhccCCChHHHHHHHHhhhccchhhHHHHHHHHH
Q 030521 92 FNEEFGKSKSNDELKEMILVANYLNIKDMLDYLTETV 128 (176)
Q Consensus 92 wd~eFl~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~i 128 (176)
.. +.+.+.+|+.||++|+|+.|.+.|++++
T Consensus 114 ------~i-~~~~v~~ll~~A~~l~i~~L~~~C~~~L 143 (144)
T 2ppi_A 114 ------RL-NEDTIQDVVQAADLLLLTDLKTLCCEFL 143 (144)
T ss_dssp ------CC-CTTTHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred ------CC-CHHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 12 5567899999999999999999998764
No 20
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=98.73 E-value=1.8e-08 Score=72.87 Aligned_cols=91 Identities=21% Similarity=0.398 Sum_probs=70.0
Q ss_pred CcEEEEeCCCCEEEecHHHH-HHhHHHHHHHhcCCCCCCCcccccC-CCChHHHHHHHHHHHHhhhccCCCCCccccchh
Q 030521 15 KKISLKTADGHLFEVEEPVA-MEFEIVKSFFDENDDASEDTVVPLP-NVSAAPLSYIIEFCRAHVEFRKKRSPKQEVKTF 92 (176)
Q Consensus 15 ~~i~L~s~DG~~f~V~~~~a-~~S~~l~~ll~~~~~~~~~~~Ipl~-~v~s~~L~~Iie~c~~h~~~~~~~~~~~~~~~w 92 (176)
..++|+. +|+.|.+++.++ ..|++++.++... ....|.|| +++..+++.+++|++...-
T Consensus 34 ~Dv~l~v-~~~~~~~Hk~vLaa~S~~F~~~f~~~----~~~~i~l~~~~~~~~f~~ll~~iYtg~~-------------- 94 (129)
T 3ga1_A 34 CDVSVVV-KGHAFKAHRAVLAASSSYFRDLFNNS----RSAVVELPAAVQPQSFQQILSFCYTGRL-------------- 94 (129)
T ss_dssp CCEEEEE-TTEEEEECHHHHHHHBHHHHHHHHHC----CCSEEECCTTCCHHHHHHHHHHHHHSEE--------------
T ss_pred cceEEEE-CCEEEEehHHHHHHcCHHHHHHHcCC----CCCEEEECCCCCHHHHHHHHHHHhCCcc--------------
Confidence 4577776 799999999996 4799999999876 23478997 8999999999999996331
Q ss_pred hhhhccCCChHHHHHHHHhhhccchhhHHHHHHHHHHH
Q 030521 93 NEEFGKSKSNDELKEMILVANYLNIKDMLDYLTETVAN 130 (176)
Q Consensus 93 d~eFl~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~iA~ 130 (176)
.. +.+.+.+|+.||++|+|+.|.+.|+.++..
T Consensus 95 -----~i-~~~~~~~ll~~A~~~~i~~l~~~C~~~L~~ 126 (129)
T 3ga1_A 95 -----SM-NVGDQDLLMYTAGFLQIQEIMEKGTEFFLK 126 (129)
T ss_dssp -----EC-CTTTHHHHHHHHHHTTBTTSSCC-------
T ss_pred -----cc-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 12 455689999999999999999999998854
No 21
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=98.71 E-value=3.4e-08 Score=80.15 Aligned_cols=106 Identities=13% Similarity=0.188 Sum_probs=79.1
Q ss_pred CcEEEEeC--CCCEEEecHHHHH-HhHHHHHHHhcCCCCCCCcccccC------CCChHHHHHHHHHHHHhhhccCCCCC
Q 030521 15 KKISLKTA--DGHLFEVEEPVAM-EFEIVKSFFDENDDASEDTVVPLP------NVSAAPLSYIIEFCRAHVEFRKKRSP 85 (176)
Q Consensus 15 ~~i~L~s~--DG~~f~V~~~~a~-~S~~l~~ll~~~~~~~~~~~Ipl~------~v~s~~L~~Iie~c~~h~~~~~~~~~ 85 (176)
..++|+.. ||+.|.+++.++. .|++++.|+.+...+.....|.|+ +++..+++.+++|++...-
T Consensus 33 ~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~~------- 105 (279)
T 3i3n_A 33 CDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRI------- 105 (279)
T ss_dssp CCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHHSEE-------
T ss_pred CCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCcCCc-------
Confidence 45788876 7999999999965 699999999764333334578887 8999999999999996432
Q ss_pred ccccchhhhhhccCCChHHHHHHHHhhhccchhhHHHHHHHHHHHHHcCCCHHHH
Q 030521 86 KQEVKTFNEEFGKSKSNDELKEMILVANYLNIKDMLDYLTETVANRIKNKSVEYV 140 (176)
Q Consensus 86 ~~~~~~wd~eFl~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~iA~~i~gks~eei 140 (176)
.. +.+.+.+|+.||++|+++.|.+.|+.++...+...+.-.+
T Consensus 106 ------------~i-~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~~~n~~~i 147 (279)
T 3i3n_A 106 ------------RV-STGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAI 147 (279)
T ss_dssp ------------EE-ETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTTHHHH
T ss_pred ------------cc-CHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcCCcchHHHH
Confidence 12 4456889999999999999999999999887776665444
No 22
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=98.69 E-value=7.1e-08 Score=77.28 Aligned_cols=102 Identities=14% Similarity=0.208 Sum_probs=74.2
Q ss_pred CCcEEEEeCCCCEEEecHHHHH-HhHHHHHHHhcCCC--CCCCcccccCCCChHHHHHHHHHHHHhhhccCCCCCccccc
Q 030521 14 TKKISLKTADGHLFEVEEPVAM-EFEIVKSFFDENDD--ASEDTVVPLPNVSAAPLSYIIEFCRAHVEFRKKRSPKQEVK 90 (176)
Q Consensus 14 ~~~i~L~s~DG~~f~V~~~~a~-~S~~l~~ll~~~~~--~~~~~~Ipl~~v~s~~L~~Iie~c~~h~~~~~~~~~~~~~~ 90 (176)
-..++|+. +|+.|.+++.++. .|++++.|+..... +.....|++++++..+++.+++|++...-
T Consensus 31 ~~Dv~l~v-~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Yt~~~------------ 97 (256)
T 3hve_A 31 FCDAHLVL-DGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQI------------ 97 (256)
T ss_dssp CCCEEEEE-TTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCCHHHHHHHHHHHHHSCC------------
T ss_pred CcceEEEE-CCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHHHhhccCCCC------------
Confidence 34577776 6899999999965 69999999976433 22345899999999999999999996332
Q ss_pred hhhhhhccCCChHHHHHHHHhhhccchhhHHHHHHHHHHHHHcCCC
Q 030521 91 TFNEEFGKSKSNDELKEMILVANYLNIKDMLDYLTETVANRIKNKS 136 (176)
Q Consensus 91 ~wd~eFl~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~iA~~i~gks 136 (176)
.. +.+.+.+|+.||++|+++.|.+.|+.++...+.-.+
T Consensus 98 -------~i-~~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~~~n 135 (256)
T 3hve_A 98 -------RL-NEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAEN 135 (256)
T ss_dssp -------CC-C-CCHHHHHHHHHHHTCHHHHHHHHHHHHHTCCSST
T ss_pred -------cc-cHhHHHHHHHHHHHHChHHHHHHHHHHHHhhCCHhh
Confidence 12 445678888888888888888888888876655444
No 23
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=98.66 E-value=7.4e-08 Score=70.48 Aligned_cols=96 Identities=17% Similarity=0.244 Sum_probs=77.6
Q ss_pred CcEEEEeCCCCEEEecHHHH-HHhHHHHHHHhcCCCCCCCcccccC-CCChHHHHHHHHHHHHhhhccCCCCCccccchh
Q 030521 15 KKISLKTADGHLFEVEEPVA-MEFEIVKSFFDENDDASEDTVVPLP-NVSAAPLSYIIEFCRAHVEFRKKRSPKQEVKTF 92 (176)
Q Consensus 15 ~~i~L~s~DG~~f~V~~~~a-~~S~~l~~ll~~~~~~~~~~~Ipl~-~v~s~~L~~Iie~c~~h~~~~~~~~~~~~~~~w 92 (176)
..++|+. +|+.|.+++.++ ..|++++.|+.....+ ...|.++ +++...++.+++|++.-.-
T Consensus 37 ~Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~~~e--~~~i~l~~~v~~~~~~~lL~~~Ytg~~-------------- 99 (138)
T 2z8h_A 37 CDVTVLV-EGQRFRAHRSVLAACSSYFHSRIVGQTDA--ELTVTLPEEVTVKGFEPLIQFAYTAKL-------------- 99 (138)
T ss_dssp CCEEEEE-TTEEEEECHHHHHHHCHHHHHHHTTCCCT--TEEEECCTTSCHHHHHHHHHHHHHSCC--------------
T ss_pred cCeEEEE-CCEEEechHHHHHHcCHHHHHHHhcCCCC--CceEEeCCCCCHHHHHHHHHHhcCCCc--------------
Confidence 4577776 589999999996 5799999999865432 3478886 8999999999999996431
Q ss_pred hhhhccCCChHHHHHHHHhhhccchhhHHHHHHHHHHHHHc
Q 030521 93 NEEFGKSKSNDELKEMILVANYLNIKDMLDYLTETVANRIK 133 (176)
Q Consensus 93 d~eFl~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~iA~~i~ 133 (176)
.. +.+.+.+|+.||++|+|+.|.+.|++++...+.
T Consensus 100 -----~i-~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~l~ 134 (138)
T 2z8h_A 100 -----IL-SKDNVDEVCRCVEFLSVHNIEESCFQFLKFKFL 134 (138)
T ss_dssp -----CC-CTTTHHHHHHHHHHHTCGGGHHHHHHHTTCCCS
T ss_pred -----cc-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 12 456689999999999999999999999876554
No 24
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=98.63 E-value=2.5e-07 Score=76.08 Aligned_cols=108 Identities=8% Similarity=0.177 Sum_probs=84.0
Q ss_pred CCcEEEEeCCCCEEEecHHHH-HHhHHHHHHHhcCCCCCCCcccccCCCChHHHHHHHHHHHHhhhccCCCCCccccchh
Q 030521 14 TKKISLKTADGHLFEVEEPVA-MEFEIVKSFFDENDDASEDTVVPLPNVSAAPLSYIIEFCRAHVEFRKKRSPKQEVKTF 92 (176)
Q Consensus 14 ~~~i~L~s~DG~~f~V~~~~a-~~S~~l~~ll~~~~~~~~~~~Ipl~~v~s~~L~~Iie~c~~h~~~~~~~~~~~~~~~w 92 (176)
...++|+. +|+.|.+++.++ .+|++++.|+...-.+.....|.|++++..+++.+++|++...-
T Consensus 174 ~~Dv~l~v-~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~-------------- 238 (312)
T 3hqi_A 174 FTDCCLCV-AGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKA-------------- 238 (312)
T ss_dssp SCCEEEEE-TTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHSCC--------------
T ss_pred CCceEEEE-CCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCCCC--------------
Confidence 34577777 689999999996 67999999998643333446899999999999999999986331
Q ss_pred hhhhccCCChHHHHHHHHhhhccchhhHHHHHHHHHHHHHcCCCHHHHHH
Q 030521 93 NEEFGKSKSNDELKEMILVANYLNIKDMLDYLTETVANRIKNKSVEYVRK 142 (176)
Q Consensus 93 d~eFl~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~iA~~i~gks~eeir~ 142 (176)
.. ....+.+|+.||++|+++.|...|..++...+...+.-++..
T Consensus 239 -----~~-~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~l~ 282 (312)
T 3hqi_A 239 -----PN-LDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILI 282 (312)
T ss_dssp -----TT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTTHHHHHH
T ss_pred -----CC-hHHHHHHHHHHHHHhCHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 11 347789999999999999999999999987776666655543
No 25
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=98.57 E-value=2.2e-08 Score=71.94 Aligned_cols=90 Identities=20% Similarity=0.261 Sum_probs=72.5
Q ss_pred CcEEEEeCCCCEEEecHHHH-HHhHHHHHHHhcCCCCCCCcccccCC-CChHHHHHHHHHHHHhhhccCCCCCccccchh
Q 030521 15 KKISLKTADGHLFEVEEPVA-MEFEIVKSFFDENDDASEDTVVPLPN-VSAAPLSYIIEFCRAHVEFRKKRSPKQEVKTF 92 (176)
Q Consensus 15 ~~i~L~s~DG~~f~V~~~~a-~~S~~l~~ll~~~~~~~~~~~Ipl~~-v~s~~L~~Iie~c~~h~~~~~~~~~~~~~~~w 92 (176)
..++|+. +|+.|.+++.++ ..|++++.++.....+ ...|.+++ ++..+++.+++|++...-
T Consensus 33 ~Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~~~e--~~~i~l~~~~~~~~f~~~l~~iYtg~~-------------- 95 (125)
T 3ohu_A 33 CDVTLIV-ERKEFRAHRAVLAACSEYFWQALVGQTKN--DLVVSLPEEVTARGFGPLLQFAYTAKL-------------- 95 (125)
T ss_dssp CCEEEEE-TTEEEEECHHHHHHHBHHHHHHHTTCCCS--SCEEECCTTCCHHHHHHHHHHHTTSEE--------------
T ss_pred cceEEEE-CCEEEechHHHHHHcCHHHHHHhcCCCCC--CcEEEeCCCCCHHHHHHHHHhHcCCce--------------
Confidence 4577776 689999999996 5699999999865432 45788997 999999999999985321
Q ss_pred hhhhccCCChHHHHHHHHhhhccchhhHHHHHHHH
Q 030521 93 NEEFGKSKSNDELKEMILVANYLNIKDMLDYLTET 127 (176)
Q Consensus 93 d~eFl~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ 127 (176)
.. +.+.+.+|+.||++|+|+.|.+.|+++
T Consensus 96 -----~~-~~~~v~~ll~~A~~l~i~~L~~~C~~~ 124 (125)
T 3ohu_A 96 -----LL-SRENIREVIRCAEFLRMHNLEDSCFSF 124 (125)
T ss_dssp -----EE-CTTTHHHHHHHHHHHTBSSCTTSSCCC
T ss_pred -----EE-CHHHHHHHHHHHHHhCCHHHHHHHHHh
Confidence 12 556789999999999999999888654
No 26
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=98.42 E-value=1.9e-07 Score=66.95 Aligned_cols=86 Identities=9% Similarity=0.070 Sum_probs=68.8
Q ss_pred CcEEEEeCCCCEEEecHHHH-HHhHHHHHHHhcCCCCCCCcccccCCCChHHHHHHHHHHHHhhhccCCCCCccccchhh
Q 030521 15 KKISLKTADGHLFEVEEPVA-MEFEIVKSFFDENDDASEDTVVPLPNVSAAPLSYIIEFCRAHVEFRKKRSPKQEVKTFN 93 (176)
Q Consensus 15 ~~i~L~s~DG~~f~V~~~~a-~~S~~l~~ll~~~~~~~~~~~Ipl~~v~s~~L~~Iie~c~~h~~~~~~~~~~~~~~~wd 93 (176)
..++|+. +|+.|.+++.++ ..|.+++. ....|.+++|+..+|+.+++|++.-.
T Consensus 31 ~Dv~l~v-~~~~f~aHk~vLaa~S~yF~~---------~~~~i~l~~v~~~~f~~ll~fiYtg~---------------- 84 (119)
T 3m5b_A 31 CDTLITV-GSQEFPAHSLVLAGVSQQLGR---------RGQWALGEGISPSTFAQLLNFVYGES---------------- 84 (119)
T ss_dssp CCEEEEE-TTEEEEECHHHHHTTCGGGCC---------CEEEECCSSCCHHHHHHHHHHHTTCC----------------
T ss_pred cceEEEE-CCEEEeeEHHHHHHcCHHHhc---------CCCEEEeCCCCHHHHHHHHHHHcCCC----------------
Confidence 4577776 699999999996 45988873 12378899999999999999998522
Q ss_pred hhhccCCChHHHHHHHHhhhccchhhHHHHHHHHHHH
Q 030521 94 EEFGKSKSNDELKEMILVANYLNIKDMLDYLTETVAN 130 (176)
Q Consensus 94 ~eFl~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~iA~ 130 (176)
+.. +.+.+.+|+.||++|+|+.|.+.|++++.+
T Consensus 85 ---~~i-~~~~v~~ll~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 85 ---VEL-QPGELRPLQEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp ---EEE-CGGGHHHHHHHHHHTTCHHHHHHHHHHC--
T ss_pred ---cCc-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 123 567789999999999999999999998754
No 27
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=98.40 E-value=1e-06 Score=62.60 Aligned_cols=83 Identities=16% Similarity=0.233 Sum_probs=67.9
Q ss_pred CcEEEEeCCCCEEEecHHHH-HHhHHHHHHHhcCCCCCCCcccccCCCChHHHHHHHHHHHHhhhccCCCCCccccchhh
Q 030521 15 KKISLKTADGHLFEVEEPVA-MEFEIVKSFFDENDDASEDTVVPLPNVSAAPLSYIIEFCRAHVEFRKKRSPKQEVKTFN 93 (176)
Q Consensus 15 ~~i~L~s~DG~~f~V~~~~a-~~S~~l~~ll~~~~~~~~~~~Ipl~~v~s~~L~~Iie~c~~h~~~~~~~~~~~~~~~wd 93 (176)
+.++|+. +|+.|.+++.++ ..|++++.++... ...|.+++++..+++.+++|++.-.- +
T Consensus 32 ~Dv~l~v-~~~~f~aHk~vLaa~S~~F~~~f~~~-----~~~i~l~~~~~~~f~~~l~~~Ytg~~-----------~--- 91 (116)
T 3fkc_A 32 CDVTVIV-EDRKFRAHKNILSASSTYFHQLFSVA-----GQVVELSFIRAEIFAEILNYIYSSKI-----------V--- 91 (116)
T ss_dssp CCEEEEE-TTEEEEECHHHHHHHCHHHHHHTTSC-----CSEEEECSSCHHHHHHHHHHHTTSCC-----------C---
T ss_pred eeEEEEE-CCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeCCCCHHHHHHHHHhhcCCCc-----------C---
Confidence 4577776 689999999996 6799999999864 23789999999999999999985221 0
Q ss_pred hhhccCCChHHHHHHHHhhhccchhhHHH
Q 030521 94 EEFGKSKSNDELKEMILVANYLNIKDMLD 122 (176)
Q Consensus 94 ~eFl~~~~~~~l~~Ll~AA~~L~I~~L~~ 122 (176)
.. +.+.+.+|+.||++|+|++|.+
T Consensus 92 ----~~-~~~~~~~ll~~A~~l~i~~L~~ 115 (116)
T 3fkc_A 92 ----RV-RSDLLDELIKSGQLLGVKFIAA 115 (116)
T ss_dssp ----SC-CHHHHHHHHHHHHHHTCHHHHT
T ss_pred ----CC-CHHHHHHHHHHHHHhCccccCc
Confidence 12 6778999999999999999975
No 28
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=98.37 E-value=2.1e-07 Score=66.79 Aligned_cols=91 Identities=14% Similarity=0.239 Sum_probs=72.0
Q ss_pred CcEEEEeCCCCEEEecHHHH-HHhHHHHHHHhcCCCCCCCcccccC-CCChHHHHHHHHHHHHhhhccCCCCCccccchh
Q 030521 15 KKISLKTADGHLFEVEEPVA-MEFEIVKSFFDENDDASEDTVVPLP-NVSAAPLSYIIEFCRAHVEFRKKRSPKQEVKTF 92 (176)
Q Consensus 15 ~~i~L~s~DG~~f~V~~~~a-~~S~~l~~ll~~~~~~~~~~~Ipl~-~v~s~~L~~Iie~c~~h~~~~~~~~~~~~~~~w 92 (176)
..++|+. +|+.|.+++.++ ..|++++.|+.+...+ ...|.+| +++...++.+++|++...-
T Consensus 30 ~Dv~l~v-~~~~~~aHk~vLaa~S~yF~~mf~~~~~e--~~~i~l~~~v~~~~f~~lL~~iYtg~~-------------- 92 (124)
T 2ihc_A 30 CDVTIFV-EGQRFRAHRSVLAACSSYFHSRIVGQADG--ELNITLPEEVTVKGFEPLIQFAYTAKL-------------- 92 (124)
T ss_dssp CCEEEEE-TTEEEEECHHHHHHHBHHHHHHHTTC-----CEEEECCTTSCHHHHHHHHHHHHHSEE--------------
T ss_pred cCEEEEE-CCEEEecHHHHHHHcCHHHHHHHcCCCCC--CceEeecCCcCHHHHHHHHHHhcCCCc--------------
Confidence 4577776 589999999996 5799999999865332 2467885 8999999999999996432
Q ss_pred hhhhccCCChHHHHHHHHhhhccchhhHHHHHHHHH
Q 030521 93 NEEFGKSKSNDELKEMILVANYLNIKDMLDYLTETV 128 (176)
Q Consensus 93 d~eFl~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~i 128 (176)
.. +.+.+.+|+.||++|+++.|.+.|++++
T Consensus 93 -----~i-~~~~v~~ll~~A~~~~~~~L~~~C~~~l 122 (124)
T 2ihc_A 93 -----IL-SKENVDEVCKCVEFLSVHNIEESCFQFL 122 (124)
T ss_dssp -----EE-ETTTHHHHHHHHHHHTBSSCCGGGGGTC
T ss_pred -----cc-CHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 12 4556899999999999999999998765
No 29
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=93.55 E-value=0.54 Score=32.34 Aligned_cols=97 Identities=10% Similarity=0.200 Sum_probs=65.0
Q ss_pred CCCcEEEEeCCCCEEEecHHHHHHh--HHHHHHHhcCCC----CCCCcccccCCCChHHHHHHHHHHHHhhhccCCCCCc
Q 030521 13 ATKKISLKTADGHLFEVEEPVAMEF--EIVKSFFDENDD----ASEDTVVPLPNVSAAPLSYIIEFCRAHVEFRKKRSPK 86 (176)
Q Consensus 13 ~~~~i~L~s~DG~~f~V~~~~a~~S--~~l~~ll~~~~~----~~~~~~Ipl~~v~s~~L~~Iie~c~~h~~~~~~~~~~ 86 (176)
.+..|+|-=. |+.|.++...+..- ..|..|+..... .++...+=+ +-++..++.|+.|++..+-..
T Consensus 4 ~~~~v~LNVG-G~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi-DRdp~~F~~IL~~lr~g~l~~------ 75 (107)
T 3drz_A 4 VSKWVRLNVG-GTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVI------ 75 (107)
T ss_dssp -CCEEEEEET-TEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEE-CSCHHHHHHHHHHHHHSCCCC------
T ss_pred CCCEEEEEEC-CEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEe-cCChHHHHHHHHHhCCCeeCC------
Confidence 4556666554 99999999998653 467777764210 012234444 489999999999999743211
Q ss_pred cccchhhhhhccCCChHHHHHHHHhhhccchhhHHHHHHHHHHH
Q 030521 87 QEVKTFNEEFGKSKSNDELKEMILVANYLNIKDMLDYLTETVAN 130 (176)
Q Consensus 87 ~~~~~wd~eFl~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~iA~ 130 (176)
+. .+. ...++..|.|.+|.+|++++-..|..
T Consensus 76 ---p~-------~~~---~~~l~~Ea~fy~l~~L~~~l~~~i~~ 106 (107)
T 3drz_A 76 ---NK-------DLA---EEGVLEEAEFYNITSLIKLVKDKIRE 106 (107)
T ss_dssp ---CT-------TSC---HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ---CC-------CCC---HHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 10 102 24678899999999999999887753
No 30
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=82.45 E-value=3.2 Score=31.99 Aligned_cols=99 Identities=11% Similarity=0.242 Sum_probs=66.0
Q ss_pred CCCCcEEEEeCCCCEEEecHHHHHHh--HHHHHHHhcCCC----CCCCcccccCCCChHHHHHHHHHHHHhhhccCCCCC
Q 030521 12 QATKKISLKTADGHLFEVEEPVAMEF--EIVKSFFDENDD----ASEDTVVPLPNVSAAPLSYIIEFCRAHVEFRKKRSP 85 (176)
Q Consensus 12 ~~~~~i~L~s~DG~~f~V~~~~a~~S--~~l~~ll~~~~~----~~~~~~Ipl~~v~s~~L~~Iie~c~~h~~~~~~~~~ 85 (176)
..+..|+|-= .|+.|.+....+..- ..|..|+..... .++...+=+ +-++..++.|+.|++..+-.
T Consensus 9 ~~~~~V~LNV-GG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFI-DRDP~~F~~ILnyLRtG~L~------ 80 (202)
T 3drx_A 9 SVSKWVRLNV-GGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLV------ 80 (202)
T ss_dssp CCCCEEEEEE-TTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEE-CSCSTTHHHHHHHHHHSCCC------
T ss_pred CCCCEEEEEE-CCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEe-cCChHHHHHHHHHhcCCccC------
Confidence 4455566655 499999999987653 356777654211 012234544 47899999999999974321
Q ss_pred ccccchhhhhhccCCChHHHHHHHHhhhccchhhHHHHHHHHHHHH
Q 030521 86 KQEVKTFNEEFGKSKSNDELKEMILVANYLNIKDMLDYLTETVANR 131 (176)
Q Consensus 86 ~~~~~~wd~eFl~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~iA~~ 131 (176)
++. .+.. ..|+..|.|.+|.+|++.|-..+..+
T Consensus 81 ---lP~-------~~~~---~~l~eEA~FygL~~Lv~~l~~~i~er 113 (202)
T 3drx_A 81 ---INK-------DLAE---EGVLEEAEFYNITSLIKLVKDKIRER 113 (202)
T ss_dssp ---CCT-------TSCH---HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---CCC-------CCCH---HHHHHHHHHCCcHHHHHHHHHHHHHH
Confidence 110 1121 35889999999999999999988654
No 31
>2xf7_A GP23.1; viral protein; 1.61A {Bacillus phage SPP1} PDB: 2xf5_A 2xf6_A
Probab=64.39 E-value=8 Score=22.54 Aligned_cols=36 Identities=25% Similarity=0.453 Sum_probs=27.4
Q ss_pred HHHHHcC-CCHHHHHHHcCCCCCCCHHHHHHHHHhcccc
Q 030521 128 VANRIKN-KSVEYVRKFFGIENDFTPEEEEAARKEYEWA 165 (176)
Q Consensus 128 iA~~i~g-ks~eeir~~f~i~~d~t~EEe~~i~~e~~w~ 165 (176)
.-.+..| -+.++||+..+- .|+|++|..+|. +|+|-
T Consensus 11 ~D~W~~GT~~~~~mR~AV~~-G~iTQ~E~D~I~-~ypwg 47 (51)
T 2xf7_A 11 LDSWLDGTASEELLRVAVNA-GDLTQEEADKIM-SYPWG 47 (51)
T ss_dssp HHHHHHTCCCHHHHHHHHHH-TSSCHHHHHHHH-TSCTT
T ss_pred HHHHhcchhhHHHHHHHHhc-CcccHHHHHHHH-hCccc
Confidence 4456667 578999988764 479999999884 78884
No 32
>3tnt_A SARS coronavirus main protease; 3C-like protease, hydrolase-hydrolase inhibitor CO; HET: G85; 1.59A {Sars coronavirus} PDB: 1uk2_A 1uk3_A 1uk4_A 1z1i_A 2a5a_A 1uj1_A* 2bx3_A 2bx4_A 2c3s_A 2a5i_A 2gt7_A* 2gx4_A* 2gz7_A* 2gz8_A* 2gz9_A 2duc_A 2hob_A* 2v6n_A* 2z3c_A* 2z3d_A* ...
Probab=62.38 E-value=19 Score=29.19 Aligned_cols=98 Identities=12% Similarity=0.180 Sum_probs=65.4
Q ss_pred ccccCCCChHHHHHHHHHHHHhhhccCC------CCCccccchhhhh--hccCCChH--HHHHHHHhhhccchhhHHHHH
Q 030521 55 VVPLPNVSAAPLSYIIEFCRAHVEFRKK------RSPKQEVKTFNEE--FGKSKSND--ELKEMILVANYLNIKDMLDYL 124 (176)
Q Consensus 55 ~Ipl~~v~s~~L~~Iie~c~~h~~~~~~------~~~~~~~~~wd~e--Fl~~~~~~--~l~~Ll~AA~~L~I~~L~~l~ 124 (176)
...++.-+--.-.-|+.|++-+--.... .-..+...+|-.. | .....+ ..++.+.|..=-.+..|+...
T Consensus 190 ~~Q~~~~d~~~T~NVvAwLYAAilng~~Wfl~~~~~sv~dfN~WA~~ngf-t~~~~~~~~~~~~Laa~TGVsVe~lL~aI 268 (306)
T 3tnt_A 190 TAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNY-EPLTQDHVDILGPLSAQTGIAVLDMCAAL 268 (306)
T ss_dssp SCCCCCCCCBCHHHHHHHHHHHHHTTCCTTCCSCCCCHHHHHHHHHHTTB-CCCCHHHHHHTHHHHHHHTCCHHHHHHHH
T ss_pred hhhccCccceeehhHHHHHHHHHhcCCeEEeeccEecHHHHHHHHHhcCC-ccccccHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4445545555567899999876554321 1122345566332 3 222443 458999999999999999988
Q ss_pred HHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHH
Q 030521 125 TETVANRIKNKSVEYVRKFFGIENDFTPEEEE 156 (176)
Q Consensus 125 ~~~iA~~i~gks~eeir~~f~i~~d~t~EEe~ 156 (176)
-+.+.+=+.|++ |.-...++++|||+|--
T Consensus 269 ~~ll~~g~~G~~---IlG~~~leDE~Tp~~V~ 297 (306)
T 3tnt_A 269 KELLQNGMNGRT---ILGSTILEDEFTPFDVV 297 (306)
T ss_dssp HHHHHHCCTTCC---BTTBSSCCCSCCHHHHH
T ss_pred HHHHhcCcCCce---eeccccccccCCHHHHH
Confidence 877777677887 66667788899997743
No 33
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=53.94 E-value=17 Score=24.41 Aligned_cols=36 Identities=11% Similarity=0.309 Sum_probs=27.8
Q ss_pred HHHHHHHcCCCHHHHHHHcC------CC-CCCCHHHHHHHHHh
Q 030521 126 ETVANRIKNKSVEYVRKFFG------IE-NDFTPEEEEAARKE 161 (176)
Q Consensus 126 ~~iA~~i~gks~eeir~~f~------i~-~d~t~EEe~~i~~e 161 (176)
..||..+.|+|+.+.|+.+. |. ..+|+||.+.|.+.
T Consensus 25 ~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~ 67 (107)
T 2k9n_A 25 IRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQK 67 (107)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHH
T ss_pred HHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHH
Confidence 46788888999999998743 33 35999998888664
No 34
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=50.61 E-value=25 Score=24.31 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=28.4
Q ss_pred HHHHHHHHcCCCHHHHHHHcC------CC-CCCCHHHHHHHHHh
Q 030521 125 TETVANRIKNKSVEYVRKFFG------IE-NDFTPEEEEAARKE 161 (176)
Q Consensus 125 ~~~iA~~i~gks~eeir~~f~------i~-~d~t~EEe~~i~~e 161 (176)
=..||..+.|+|..++|..+. +. ..+|+||.+.+.+.
T Consensus 50 W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~ 93 (128)
T 1h8a_C 50 WSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQA 93 (128)
T ss_dssp HHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhcccccccccCCHHHHHHHHHH
Confidence 357788889999999998753 32 35999998888664
No 35
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=48.45 E-value=4.4 Score=20.71 Aligned_cols=12 Identities=25% Similarity=0.625 Sum_probs=9.7
Q ss_pred HHHHHHhhhccc
Q 030521 105 LKEMILVANYLN 116 (176)
Q Consensus 105 l~~Ll~AA~~L~ 116 (176)
+.-|+.||+||+
T Consensus 5 vq~LLeAAeyLE 16 (26)
T 1pd7_B 5 IQMLLEAADYLE 16 (26)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 456889999986
No 36
>3tlo_A 3CL-Pro, 3CLP, 3C-like proteinase; hydrolysis, hydrolase, protein binding; 1.60A {Human coronavirus} PDB: 2zu2_A 1p9s_A
Probab=48.19 E-value=17 Score=29.42 Aligned_cols=97 Identities=9% Similarity=0.134 Sum_probs=63.2
Q ss_pred ccccCCCChHHHHHHHHHHHHhhhccCC---C---CCccccchhhhh--hccCCChHHHHHHHHhhhccchhhHHHHHHH
Q 030521 55 VVPLPNVSAAPLSYIIEFCRAHVEFRKK---R---SPKQEVKTFNEE--FGKSKSNDELKEMILVANYLNIKDMLDYLTE 126 (176)
Q Consensus 55 ~Ipl~~v~s~~L~~Iie~c~~h~~~~~~---~---~~~~~~~~wd~e--Fl~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~ 126 (176)
...++.-+--+-.-|+.|++-+--+..+ . -..+...+|-.. |-.. .....++++.|-.=-.+..|+...-+
T Consensus 190 v~Q~~~~d~~~T~NVvAwLYAAilng~~wfl~~~~~sv~dfN~WA~~ngft~~-~~~~~~~~Laa~TGVsV~~lL~aI~~ 268 (303)
T 3tlo_A 190 SLQVESANLMLSDNVVAFLYAALLNGCRWWLCSTRVNVDGFNEWAMANGYTSV-SSVECYSILAAKTGVSVEQLLASIQH 268 (303)
T ss_dssp CCCCCCCCCBCHHHHHHHHHHHHHTTCCTTCCCCCCCHHHHHHHHHHHTBCCC-CCSGGGHHHHHHHTCCHHHHHHHHHH
T ss_pred hhcccCccceeehhHHHHHHHHHHcCCCeeeccceecHHHHHHHHHhcCcccc-ccchHHHHHHHHhCCcHHHHHHHHHH
Confidence 3445545555567899999987665433 1 122355666433 3333 55677999999999999999887664
Q ss_pred HHHHHHcCCCHHHHHHHcCCCCCCCHHHHH
Q 030521 127 TVANRIKNKSVEYVRKFFGIENDFTPEEEE 156 (176)
Q Consensus 127 ~iA~~i~gks~eeir~~f~i~~d~t~EEe~ 156 (176)
++.-..|++ |.-...++++|||+|--
T Consensus 269 -L~~g~~G~~---IlG~~~leDE~Tp~~V~ 294 (303)
T 3tlo_A 269 -LHEGFGGKN---ILGYSSLCDEFTLAEVV 294 (303)
T ss_dssp -HTTCCTTCC---BTTBSSCCCCCCHHHHH
T ss_pred -HhcCCCCce---ecccccccccCCHHHHH
Confidence 555555555 45556688899997743
No 37
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=48.04 E-value=15 Score=24.47 Aligned_cols=36 Identities=17% Similarity=0.324 Sum_probs=27.7
Q ss_pred HHHHHHHcCCCHHHHHHHcC------CC-CCCCHHHHHHHHHh
Q 030521 126 ETVANRIKNKSVEYVRKFFG------IE-NDFTPEEEEAARKE 161 (176)
Q Consensus 126 ~~iA~~i~gks~eeir~~f~------i~-~d~t~EEe~~i~~e 161 (176)
..||..+.|+|+.+.|..+. +. ..+|+||.+.+.+.
T Consensus 28 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~ 70 (105)
T 1gv2_A 28 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQA 70 (105)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHH
T ss_pred HHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHH
Confidence 46788888999999998753 22 35999998888764
No 38
>3d23_B 3C-like proteinase; main protease, ATP-binding, endonuclease, exonuclease, helic hydrolase, membrane, metal-binding, nuclease; HET: 3IH; 2.50A {Human coronavirus}
Probab=44.82 E-value=39 Score=27.26 Aligned_cols=98 Identities=12% Similarity=0.192 Sum_probs=63.5
Q ss_pred cccccCCCChHHHHHHHHHHHHhhhccCC------CCCccccchhhhh--hccCCChHHHHHHHHhhhccchhhHHHHHH
Q 030521 54 TVVPLPNVSAAPLSYIIEFCRAHVEFRKK------RSPKQEVKTFNEE--FGKSKSNDELKEMILVANYLNIKDMLDYLT 125 (176)
Q Consensus 54 ~~Ipl~~v~s~~L~~Iie~c~~h~~~~~~------~~~~~~~~~wd~e--Fl~~~~~~~l~~Ll~AA~~L~I~~L~~l~~ 125 (176)
+...++..+--.-.-|+.|++-+--.... .-..+...+|-.. |-.. .....++.+.|..=-.+..|+...-
T Consensus 191 ~~~Q~~~~d~~~T~NVvA~LYAAilng~~Wf~~~~~~s~~~fN~WA~~ngft~~-~~~~~~~~Laa~TgVsVe~lLaaI~ 269 (302)
T 3d23_B 191 QVVQLPVKDYVQTVNVIAWLYAAILNNCAWFVQNDVCSTEDFNVWAMANGFSQV-KADLVLDALASMTGVSIETLLAAIK 269 (302)
T ss_dssp SSCCCCCCCCBCHHHHHHHHHHHHHTTCCTTCCSCCCCHHHHHHHHHHHTBCCC-CCCHHHHHHHHHHSCCHHHHHHHHH
T ss_pred hhhhccCccceeehhHHHHHHHHHHcCCceeeccceecHHHHHHHHHhCCcccc-cchhHHHHHHHHhCCcHHHHHHHHH
Confidence 34456555566667899999977655432 1123356666433 3333 5667899999999999999987554
Q ss_pred HHHHHHHcCCCHHHHHHHcCCCCCCCHHHHH
Q 030521 126 ETVANRIKNKSVEYVRKFFGIENDFTPEEEE 156 (176)
Q Consensus 126 ~~iA~~i~gks~eeir~~f~i~~d~t~EEe~ 156 (176)
+ ++.-+.||+ |.-...++++|||++--
T Consensus 270 ~-L~~gf~G~~---IlG~~~leDE~Tp~~V~ 296 (302)
T 3d23_B 270 R-LYMGFQGRQ---ILGSCTFEDELAPSDVY 296 (302)
T ss_dssp H-HHTCCTTCC---BTTBSSCCCSSCHHHHH
T ss_pred H-HhcCCCCce---eeccccccccCCHHHHH
Confidence 3 354445555 45556688899998743
No 39
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=41.14 E-value=35 Score=23.61 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=28.4
Q ss_pred HHHHHHHHcCCCHHHHHHHcC------CCC-CCCHHHHHHHHHh
Q 030521 125 TETVANRIKNKSVEYVRKFFG------IEN-DFTPEEEEAARKE 161 (176)
Q Consensus 125 ~~~iA~~i~gks~eeir~~f~------i~~-d~t~EEe~~i~~e 161 (176)
=..||..+.|+|..+.|+.+. +.. .+|+||.+.+.+.
T Consensus 33 W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~ 76 (126)
T 3osg_A 33 WKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQK 76 (126)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHH
Confidence 467788888999999988743 333 5999998887663
No 40
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=39.74 E-value=16 Score=25.57 Aligned_cols=35 Identities=23% Similarity=0.436 Sum_probs=26.2
Q ss_pred HHHHHHcCCCHHHHHHHc------CCCC-CCCHHHHHHHHHh
Q 030521 127 TVANRIKNKSVEYVRKFF------GIEN-DFTPEEEEAARKE 161 (176)
Q Consensus 127 ~iA~~i~gks~eeir~~f------~i~~-d~t~EEe~~i~~e 161 (176)
.||..+.|+|+.+.|+.+ ++.. .+|+||.+.|.+.
T Consensus 27 ~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~ 68 (131)
T 3zqc_A 27 RITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRN 68 (131)
T ss_dssp GGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHH
Confidence 566667789999998876 3443 5999998887653
No 41
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=39.72 E-value=19 Score=22.99 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=15.9
Q ss_pred HHHHHHHcCCCHHHHHHHcC
Q 030521 126 ETVANRIKNKSVEYVRKFFG 145 (176)
Q Consensus 126 ~~iA~~i~gks~eeir~~f~ 145 (176)
..||..+-|||++|+++.|.
T Consensus 35 e~IA~~V~gKT~eE~~~hY~ 54 (73)
T 1wgx_A 35 SEVAAAVGSRSPEECQRKYM 54 (73)
T ss_dssp HHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHH
Confidence 56788888999999977653
No 42
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=39.31 E-value=22 Score=22.53 Aligned_cols=19 Identities=26% Similarity=0.282 Sum_probs=14.2
Q ss_pred HHHHHHHcCCCHHHHHHHcC
Q 030521 126 ETVANRIKNKSVEYVRKFFG 145 (176)
Q Consensus 126 ~~iA~~i~gks~eeir~~f~ 145 (176)
..||..+ |+|++|+++.+.
T Consensus 35 ~~IA~~l-gRt~~eV~~~y~ 53 (72)
T 2cqq_A 35 EKIAHEL-GRSVTDVTTKAK 53 (72)
T ss_dssp HHHHHHH-TSCHHHHHHHHH
T ss_pred HHHHHHh-CCCHHHHHHHHH
Confidence 4566665 899999998753
No 43
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=38.96 E-value=16 Score=25.61 Aligned_cols=92 Identities=8% Similarity=0.066 Sum_probs=56.1
Q ss_pred CCCcEEEEeCCCCEEEecHHHHHHhHHHHHHHhcCC----CCCCCcccccCCCChHHHHHHHHHHHHhhhccCCCCCccc
Q 030521 13 ATKKISLKTADGHLFEVEEPVAMEFEIVKSFFDEND----DASEDTVVPLPNVSAAPLSYIIEFCRAHVEFRKKRSPKQE 88 (176)
Q Consensus 13 ~~~~i~L~s~DG~~f~V~~~~a~~S~~l~~ll~~~~----~~~~~~~Ipl~~v~s~~L~~Iie~c~~h~~~~~~~~~~~~ 88 (176)
.+..|+|- -.|+.|.+....+..-+ ..+|...+ ..++...+-+. =++..++.|+.|++.-+-.
T Consensus 11 ~~~~V~LN-VGG~~F~t~~~TL~~~p--~S~L~~~~~~~~~~~~~g~~FiD-Rdp~~F~~ILnflR~G~l~--------- 77 (124)
T 1s1g_A 11 QDELIVLN-VSGRRFQTWRTTLERYP--DTLLGSTEKEFFFNEDTKEYFFD-RDPEVFRCVLNFYRTGKLH--------- 77 (124)
T ss_dssp -CCEEEEE-ETTEEEEEEHHHHTTST--TSSTTSSGGGGTBCSSSCSEEEC-SCHHHHHHHHHHHHHSCBC---------
T ss_pred CCCEEEEE-eCCEEEEEeHHHHhcCC--CceecccCCcccccCCCCcEEEc-CChHHHHHHHHHHhcCCCC---------
Confidence 34555544 44999999999875421 01121111 11122345453 6999999999999974321
Q ss_pred cchhhhhhccCCChHHHHHHHHhhhccchhhH-HHHHHHH
Q 030521 89 VKTFNEEFGKSKSNDELKEMILVANYLNIKDM-LDYLTET 127 (176)
Q Consensus 89 ~~~wd~eFl~~~~~~~l~~Ll~AA~~L~I~~L-~~l~~~~ 127 (176)
++ . +. .+-.|...|.|.+|.+| ++.||..
T Consensus 78 ~p--------~-~~-~~~~l~~Ea~fy~i~~l~l~~cC~~ 107 (124)
T 1s1g_A 78 YP--------R-YE-CISAYDDELAFYGILPEIIGDCCYE 107 (124)
T ss_dssp CC--------T-TS-CHHHHHHHHHHTTCCGGGBCHHHHH
T ss_pred CC--------C-Cc-CHHHHHHHHHHcCCChHHHHHHHHH
Confidence 11 0 11 25778999999999998 4777754
No 44
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=37.60 E-value=8.1 Score=24.95 Aligned_cols=44 Identities=25% Similarity=0.316 Sum_probs=29.7
Q ss_pred ChHHHHHHHHhhhccchhhHHHHHHHHHHHHHcCCCHHHHHHHcCCCC
Q 030521 101 SNDELKEMILVANYLNIKDMLDYLTETVANRIKNKSVEYVRKFFGIEN 148 (176)
Q Consensus 101 ~~~~l~~Ll~AA~~L~I~~L~~l~~~~iA~~i~gks~eeir~~f~i~~ 148 (176)
..+.+|+-..|..--+-+.-. ..||..+-|||++|++..+.++.
T Consensus 26 eE~K~FE~ALa~yp~~tpdRW----ekIA~~VpGKT~eEVk~hY~~~~ 69 (74)
T 4eef_G 26 SENIAFEIALSFTNKDTPDRW----KKVAQYVKGRTPEEVKKHYELEH 69 (74)
T ss_dssp THHHHHHHHTSSSCSSCCSSS----TTTGGGSCSSCHHHHHGGGC---
T ss_pred HHHHHHHHHHHHCCCCCCcHH----HHHHHHcCCCCHHHHHHHHHHhh
Confidence 567778777766544443333 46777788999999999988753
No 45
>2q6f_A Fragment, infectious bronchitis virus (IBV) main protease; coronavirus, 3C-like proteinase, michael acceptor inhibitor, hydrolase; HET: 3IH; 2.00A {Infectious bronchitis virus} PDB: 2q6d_A*
Probab=37.48 E-value=69 Score=25.89 Aligned_cols=98 Identities=10% Similarity=0.095 Sum_probs=62.9
Q ss_pred cccccCCCChHHHHHHHHHHHHhhhccC------C------CCCccccchhhhhh-ccCCChHHHHHHHHhhhccchhhH
Q 030521 54 TVVPLPNVSAAPLSYIIEFCRAHVEFRK------K------RSPKQEVKTFNEEF-GKSKSNDELKEMILVANYLNIKDM 120 (176)
Q Consensus 54 ~~Ipl~~v~s~~L~~Iie~c~~h~~~~~------~------~~~~~~~~~wd~eF-l~~~~~~~l~~Ll~AA~~L~I~~L 120 (176)
+...++..+--.-.-|+.|++-+--... + .-..+...+|-..- |..+.....++.+.|..=-.+..|
T Consensus 189 ~~~Q~~~~~~~~T~NVvA~LYAAllng~~~~~~~~~Wl~~~~~s~e~fN~WA~~ngft~~~~~~~~~~Laa~TGVsVe~l 268 (309)
T 2q6f_A 189 EVAQRVPPDNLVTNNIVAWLYAAIISVKESSFSQPKWLESTTVSIEDYNRWASDNGFTPFSTSTAITKLSAITGVDVCKL 268 (309)
T ss_dssp SSCCCCCCCCBCHHHHHHHHHHHHHHC-------CTTSCSSCCCHHHHHHHHHHHTBCCCCCCHHHHHHHHHHTCCHHHH
T ss_pred hhhhccCcceeeehhHHHHHHHHHHcCcccccccccccccceecHHHHHHHHHhCCCcccchhhHHHHHHHHhCCcHHHH
Confidence 3445555555566789999987655431 1 11223456664331 222366789999999999999999
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHH
Q 030521 121 LDYLTETVANRIKNKSVEYVRKFFGIENDFTPEEE 155 (176)
Q Consensus 121 ~~l~~~~iA~~i~gks~eeir~~f~i~~d~t~EEe 155 (176)
+...- .++.-..|++ |.-...++++|||++-
T Consensus 269 L~aI~-~L~~gf~G~~---IlG~~~leDE~Tp~~V 299 (309)
T 2q6f_A 269 LRTIM-VKSAQWGSDP---ILGQYNFEDELTPESV 299 (309)
T ss_dssp HHHHH-HHHHCCCSCC---BTTBSSCCCSCCHHHH
T ss_pred HHHHH-HHhcCCCCce---ecccccccccCCHHHH
Confidence 87665 5666556666 4444558888999874
No 46
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=34.44 E-value=30 Score=23.24 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=17.4
Q ss_pred HHHHHHHHcCCCHHHHHHHcC
Q 030521 125 TETVANRIKNKSVEYVRKFFG 145 (176)
Q Consensus 125 ~~~iA~~i~gks~eeir~~f~ 145 (176)
-.+||.++.+||++|++..|.
T Consensus 58 Fa~iA~~L~Nks~nqV~~RFq 78 (95)
T 1ug2_A 58 FSVISQQLGNKTPVEVSHRFR 78 (95)
T ss_dssp HHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHH
Confidence 345888889999999998874
No 47
>3g5o_A Uncharacterized protein RV2865; heterotetramer, 1:1 ratio, structural genomics, PSI-2, prote structure initiative; 2.00A {Mycobacterium tuberculosis}
Probab=32.53 E-value=86 Score=21.09 Aligned_cols=48 Identities=17% Similarity=0.272 Sum_probs=38.6
Q ss_pred ChHHHHHHHHhhhccchhhHHHHHHHHHHHHHcCC--CHHHHHHHcCCCC
Q 030521 101 SNDELKEMILVANYLNIKDMLDYLTETVANRIKNK--SVEYVRKFFGIEN 148 (176)
Q Consensus 101 ~~~~l~~Ll~AA~~L~I~~L~~l~~~~iA~~i~gk--s~eeir~~f~i~~ 148 (176)
+.+..-.|......|..+.+.....+.++..-.|+ |.+|+++.||+..
T Consensus 48 s~e~ye~l~etl~LL~~~~~~~~L~~a~~~~~~G~~~s~eev~~~lgl~~ 97 (108)
T 3g5o_A 48 GADEWESLQETLYWLAQPGIRESIAEADADIASGRTYGEDEIRAEFGVPR 97 (108)
T ss_dssp EHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHTCEECHHHHHHHHTCCC
T ss_pred cHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHcCCCcCHHHHHHHhCCCc
Confidence 55666667777778888888888888888877775 8899999999865
No 48
>1lvo_A Replicase, hydrolase domain; 3C like, corona, proteinase, chymotrypsin, cysteine histidine DYAD, beta barrel; 1.96A {Transmissible gastroenteritis virus} SCOP: b.47.1.4 PDB: 1p9u_A 2amp_A*
Probab=31.49 E-value=38 Score=27.33 Aligned_cols=99 Identities=12% Similarity=0.180 Sum_probs=61.8
Q ss_pred cccccCCCChHHHHHHHHHHHHhhhccCC------CCCccccchhhhhh-ccCCChHHHHHHHHhhhccchhhHHHHHHH
Q 030521 54 TVVPLPNVSAAPLSYIIEFCRAHVEFRKK------RSPKQEVKTFNEEF-GKSKSNDELKEMILVANYLNIKDMLDYLTE 126 (176)
Q Consensus 54 ~~Ipl~~v~s~~L~~Iie~c~~h~~~~~~------~~~~~~~~~wd~eF-l~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~ 126 (176)
+...++..+--.-.-|+.|++-+--...+ .-..+...+|-..- |..+.....++.+.|..=-.+..|+...-+
T Consensus 188 ~~~Q~~~~~~~~T~NVvA~LYAAilng~~wfl~~~~~s~~~fN~WA~~ngft~~~~~~~~~~Laa~TgVsVe~lLaaI~~ 267 (302)
T 1lvo_A 188 PSMQLEGTNVMSSDNVVAFLYAALINGERWFVTNTSMSLESYNTWAKTNSFTELSSTDAFSMLAAKTGQSVEKLLDSIVR 267 (302)
T ss_dssp SCCCCCCCCCBCHHHHHHHHHHHHHTTCCTTCCSCCCCHHHHHHHHTTTTBCCCCCSGGGHHHHHHHCCCHHHHHHHHHH
T ss_pred hhhhccCcceeeehhHHHHHHHHHHcCCceeeccceecHHHHHHHHHhCCcccccchhHhHHHHHHhCCcHHHHHHHHHH
Confidence 34455555556667899999977655432 11223455663321 222255668999999999999999875543
Q ss_pred HHHHHHcCCCHHHHHHHcCCCCCCCHHHHH
Q 030521 127 TVANRIKNKSVEYVRKFFGIENDFTPEEEE 156 (176)
Q Consensus 127 ~iA~~i~gks~eeir~~f~i~~d~t~EEe~ 156 (176)
- +.-+.|++ |.-...++++|||++--
T Consensus 268 L-~~g~~G~~---IlG~~~leDE~Tp~~V~ 293 (302)
T 1lvo_A 268 L-NKGFGGRT---ILSYGSLCDEFTPTEVI 293 (302)
T ss_dssp H-TTCCTTCC---BTTBSSCCCCSCHHHHH
T ss_pred H-hcCCCCce---ecccccccccCCHHHHH
Confidence 3 44445554 44556688889997743
No 49
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=30.85 E-value=38 Score=20.20 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=16.7
Q ss_pred HHHHHHHcCCCHHHHHHHcC
Q 030521 126 ETVANRIKNKSVEYVRKFFG 145 (176)
Q Consensus 126 ~~iA~~i~gks~eeir~~f~ 145 (176)
..||..+.|+|+.++|..|.
T Consensus 32 ~~Ia~~~~~Rt~~qcr~r~~ 51 (60)
T 1x41_A 32 QDVANQMCTKTKEECEKHYM 51 (60)
T ss_dssp HHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHH
Confidence 66788889999999998753
No 50
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.25 E-value=34 Score=20.57 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=16.4
Q ss_pred HHHHHHHcCCCHHHHHHHcC
Q 030521 126 ETVANRIKNKSVEYVRKFFG 145 (176)
Q Consensus 126 ~~iA~~i~gks~eeir~~f~ 145 (176)
..||..+.++|+.++++++-
T Consensus 35 ~~Ia~~l~~rt~~~~v~~Yy 54 (61)
T 2eqr_A 35 GLIASYLERKSVPDCVLYYY 54 (61)
T ss_dssp HHHHHHCTTSCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHH
Confidence 56788889999999988763
No 51
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=29.11 E-value=33 Score=22.82 Aligned_cols=20 Identities=25% Similarity=0.459 Sum_probs=17.5
Q ss_pred HHHHHHHcCCCHHHHHHHcC
Q 030521 126 ETVANRIKNKSVEYVRKFFG 145 (176)
Q Consensus 126 ~~iA~~i~gks~eeir~~f~ 145 (176)
..||..+-|+|.+++|..|.
T Consensus 35 ~~IA~~vpGRT~~q~k~ry~ 54 (93)
T 2cjj_A 35 ANVARAVEGRTPEEVKKHYE 54 (93)
T ss_dssp HHHHHHSTTCCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHH
Confidence 57888889999999998876
No 52
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=28.74 E-value=51 Score=23.56 Aligned_cols=36 Identities=17% Similarity=0.326 Sum_probs=27.8
Q ss_pred HHHHHHHcCCCHHHHHHHcC------CCC-CCCHHHHHHHHHh
Q 030521 126 ETVANRIKNKSVEYVRKFFG------IEN-DFTPEEEEAARKE 161 (176)
Q Consensus 126 ~~iA~~i~gks~eeir~~f~------i~~-d~t~EEe~~i~~e 161 (176)
..||..+.|.|..++|..+. +.. .+|+||...|.+.
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~ 124 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQA 124 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHH
Confidence 56788889999999998753 333 5999998887664
No 53
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=28.14 E-value=35 Score=18.13 Aligned_cols=12 Identities=42% Similarity=0.540 Sum_probs=8.0
Q ss_pred CHHHHHHHHHhc
Q 030521 151 TPEEEEAARKEY 162 (176)
Q Consensus 151 t~EEe~~i~~e~ 162 (176)
||||..++++|-
T Consensus 13 tpeelkklkeea 24 (36)
T 2ki0_A 13 TPEELKKLKEEA 24 (36)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 677777776653
No 54
>1ni7_A ER75, hypothetical protein YGDK; RD-structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: d.224.1.1
Probab=28.11 E-value=71 Score=23.24 Aligned_cols=30 Identities=10% Similarity=0.298 Sum_probs=21.5
Q ss_pred HHHHHHHHHcCCCHHHHHHH--------cCCCCCCCHH
Q 030521 124 LTETVANRIKNKSVEYVRKF--------FGIENDFTPE 153 (176)
Q Consensus 124 ~~~~iA~~i~gks~eeir~~--------f~i~~d~t~E 153 (176)
.++.+...+.|+|++||.++ +|+..-+||-
T Consensus 91 L~AlL~~~~~G~tp~eIl~~d~~~f~~~lGL~~~LSps 128 (155)
T 1ni7_A 91 LLAVLLTAVEGKTAAELQAQSPLALFDELGLRAQLSAS 128 (155)
T ss_dssp HHHHHHHHTTTCCHHHHHHSCTHHHHHHHTSSSSSCHH
T ss_pred HHHHHHHHHcCCCHHHHHhCCHHHHHHHcCchhhcCch
Confidence 34455556689999999754 6777778873
No 55
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=28.00 E-value=37 Score=23.95 Aligned_cols=64 Identities=8% Similarity=0.032 Sum_probs=43.6
Q ss_pred ChHHHHHHHHHHHHhhhccCCCCCccccchhhhhhcc-CCChHHHHHHHHhhhccchhhHHHHHHHHHHHHHc
Q 030521 62 SAAPLSYIIEFCRAHVEFRKKRSPKQEVKTFNEEFGK-SKSNDELKEMILVANYLNIKDMLDYLTETVANRIK 133 (176)
Q Consensus 62 ~s~~L~~Iie~c~~h~~~~~~~~~~~~~~~wd~eFl~-~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~iA~~i~ 133 (176)
+...+..++.-+.+..-. .+...-.+|+. .++.+..++++..|...+.+.|.+.|.++|+..+.
T Consensus 101 ~~~~~~~ll~~A~~~~~~--------~l~~~c~~~l~~~l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~ 165 (172)
T 3htm_A 101 LDKMADDLLAAADKYALE--------RLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHAT 165 (172)
T ss_dssp GGGTHHHHHHHHHHTTCH--------HHHHHHHHHHHHTCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-
T ss_pred cHHHHHHHHHHHHHhCcH--------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 334455555555554422 23444445554 35778899999999999999999999999987543
No 56
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A {Escherichia coli}
Probab=27.68 E-value=47 Score=28.37 Aligned_cols=42 Identities=19% Similarity=0.379 Sum_probs=29.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHcCCCCCCCHH-HHHHHHHhcccc
Q 030521 124 LTETVANRIKNKSVEYVRKFFGIENDFTPE-EEEAARKEYEWA 165 (176)
Q Consensus 124 ~~~~iA~~i~gks~eeir~~f~i~~d~t~E-Ee~~i~~e~~w~ 165 (176)
+-+-|..+|..||||||-+.+|+++|-.+. |+.+..-+..|-
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~k~~a~~~~~ 206 (505)
T 3few_X 164 AKAGIMEKINHKTPEEIYEALGFNKDESQRQEKAKQQAEDAWD 206 (505)
T ss_dssp HHHHHHHHTTCCCHHHHHHHTTTTTTHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHhcCCCHHHHHHHhCCCccchHHHHHHHHHHHHhhh
Confidence 445667788999999999999999986543 333333344453
No 57
>3b3d_A YTBE protein, putative morphine dehydrogenase; aldo-keto reductase, oxidoreductase; 2.30A {Bacillus subtilis}
Probab=27.67 E-value=74 Score=25.34 Aligned_cols=41 Identities=15% Similarity=0.160 Sum_probs=29.4
Q ss_pred CCCHHHHHHHcCCCC-CCCHHHHHHHHHhcccccCCCCCCCC
Q 030521 134 NKSVEYVRKFFGIEN-DFTPEEEEAARKEYEWAFEGVDPDDD 174 (176)
Q Consensus 134 gks~eeir~~f~i~~-d~t~EEe~~i~~e~~w~~~~~~~~~~ 174 (176)
..++++|++.++..+ .+|+||.++|.+-++-..-.++|+.-
T Consensus 271 ~~~~~~l~eNl~a~~~~Ls~ee~~~ld~l~~~~r~~~dP~~~ 312 (314)
T 3b3d_A 271 STKEHRIKENASVFDFELTQDDMNRIDALNENLRVGPDPDNF 312 (314)
T ss_dssp CCCHHHHHHHHCCSSCCCCHHHHHHHHTTCCCCCCSCBTTBC
T ss_pred CCCHHHHHHHHHhcCCCCCHHHHHHHhccCCCCCCCCCCCCC
Confidence 368999999988754 58999999997765544334555543
No 58
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=27.41 E-value=54 Score=20.36 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=19.1
Q ss_pred cccCcCCCCcEEEEeCCCCEEEecHH
Q 030521 7 SSCSAQATKKISLKTADGHLFEVEEP 32 (176)
Q Consensus 7 ~~~~~~~~~~i~L~s~DG~~f~V~~~ 32 (176)
++.+..++-.|.+++.+|+.|.+...
T Consensus 5 ~~~~~~~~m~i~vk~~~g~~~~~~v~ 30 (88)
T 3dbh_I 5 ASVGSGGSMLIKVKTLTGKEIEIDIE 30 (88)
T ss_dssp CCSSCCCCEEEEEECTTSCEEEEEEC
T ss_pred CCCCCCCcEEEEEEcCCCCEEEEEEC
Confidence 44445666779999999999887544
No 59
>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus}
Probab=27.10 E-value=61 Score=22.91 Aligned_cols=37 Identities=11% Similarity=0.073 Sum_probs=24.6
Q ss_pred HHHhhhccchhhHHHHHH-HHHHHHHcCCCHHHHHHHc
Q 030521 108 MILVANYLNIKDMLDYLT-ETVANRIKNKSVEYVRKFF 144 (176)
Q Consensus 108 Ll~AA~~L~I~~L~~l~~-~~iA~~i~gks~eeir~~f 144 (176)
.|.-+.|-.-=.-+..++ ..++.+++|||.+|.+++.
T Consensus 53 ~I~d~~f~~~GCais~ASaS~~te~i~Gkt~~ea~~i~ 90 (138)
T 2qq4_A 53 TIADIRFQGQGCAISTASASLMTEAVKGKKVAEALELS 90 (138)
T ss_dssp EEEEEEEEEECCHHHHHHHHHHHHHHTTSBHHHHHHHH
T ss_pred EEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 344455555444444444 5567799999999998875
No 60
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=26.92 E-value=21 Score=22.15 Aligned_cols=34 Identities=18% Similarity=0.349 Sum_probs=23.0
Q ss_pred CCHHHHHHHcCCCCC---CCHHHHHHHHHhcccccCCCCC
Q 030521 135 KSVEYVRKFFGIEND---FTPEEEEAARKEYEWAFEGVDP 171 (176)
Q Consensus 135 ks~eeir~~f~i~~d---~t~EEe~~i~~e~~w~~~~~~~ 171 (176)
+|.+|=+++|||+.+ .+. ++|++.|.-++..-.|
T Consensus 1 mt~~EA~~ILgv~~~~~~a~~---~~Ik~~yr~Lm~~nhP 37 (65)
T 2guz_B 1 MTLDESCKILNIEESKGDLNM---DKINNRFNYLFEVNDK 37 (65)
T ss_dssp CCHHHHHHHTTCCGGGTCCSH---HHHHHHHHHHHHHTCG
T ss_pred CCHHHHHHHhCCCCCcCcCCH---HHHHHHHHHHHHHhCC
Confidence 467888899999876 555 4566666666654433
No 61
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=26.57 E-value=16 Score=29.60 Aligned_cols=35 Identities=11% Similarity=0.241 Sum_probs=24.6
Q ss_pred HHHHHhhhccchhhHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCC
Q 030521 106 KEMILVANYLNIKDMLDYLTETVANRIKNKSVEYVRKFFGIENDF 150 (176)
Q Consensus 106 ~~Ll~AA~~L~I~~L~~l~~~~iA~~i~gks~eeir~~f~i~~d~ 150 (176)
..|+.||..+++-. .++.|-.++++|+.|||++++
T Consensus 246 ~nl~LaA~~~GLgs----------~~~~~~~~~~v~~~L~lP~~~ 280 (322)
T 4eo3_A 246 GNLLVQATQMGLVA----------HPVAGYDPVKVKEILKIPEDH 280 (322)
T ss_dssp HHHHHHHHHTTCEE----------EEECCSCHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHcCcCE----------EEcCccCHHHHHHHcCcCCCC
Confidence 45566666666543 235577899999999999875
No 62
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=26.46 E-value=18 Score=26.01 Aligned_cols=93 Identities=10% Similarity=0.018 Sum_probs=55.4
Q ss_pred CCcEEEEeCCCCEEEecHHHHHHhH--HHHHHHhcCCCCCCCcccccCCCChHHHHHHHHHHHHhhhccCCCCCccccch
Q 030521 14 TKKISLKTADGHLFEVEEPVAMEFE--IVKSFFDENDDASEDTVVPLPNVSAAPLSYIIEFCRAHVEFRKKRSPKQEVKT 91 (176)
Q Consensus 14 ~~~i~L~s~DG~~f~V~~~~a~~S~--~l~~ll~~~~~~~~~~~Ipl~~v~s~~L~~Iie~c~~h~~~~~~~~~~~~~~~ 91 (176)
+..|+| -=.|+.|.+....+..-+ .|...-......++...+-+. =++..++.|+.|++.-+-. ++
T Consensus 34 ~~~V~L-NVGG~~F~T~~~TL~~~P~S~L~~~~~~~~~~~~~g~yFiD-Rdp~~F~~ILnflR~G~l~---------~p- 101 (140)
T 2nz0_B 34 DELIVL-NVSGRRFQTWRTTLERYPDTLLGSTEKEFFFNEDTKEYFFD-RDPEVFRCVLNFYRTGKLH---------YP- 101 (140)
T ss_dssp CCEEEE-EETTEEEEEEHHHHHTCTTSTTTSGGGGGSEETTTTEEEEC-SCHHHHHHHHHHHHHSSBC---------CC-
T ss_pred CCEEEE-EECCEEEEeeHHHHhcCCCeeecccCCcccccCCCCeEEEe-CCcHHHHHHHHHHhcCCcC---------CC-
Confidence 344544 445999999999875421 121100000001123355454 6999999999999974321 11
Q ss_pred hhhhhccCCChHHHHHHHHhhhccchhhH-HHHHHHH
Q 030521 92 FNEEFGKSKSNDELKEMILVANYLNIKDM-LDYLTET 127 (176)
Q Consensus 92 wd~eFl~~~~~~~l~~Ll~AA~~L~I~~L-~~l~~~~ 127 (176)
. +. .+..|...|.|.+|..| ++.||..
T Consensus 102 -------~-~~-~~~~l~eEa~fy~i~~l~l~~CC~~ 129 (140)
T 2nz0_B 102 -------R-YE-CISAYDDELAFYGILPEIIGDCCYE 129 (140)
T ss_dssp -------T-TS-CHHHHHHHHHHHTCCGGGBCTTTHH
T ss_pred -------C-Cc-CHHHHHHHHHHcCCChHHHHHHHHH
Confidence 0 11 25778999999999998 5666643
No 63
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=26.42 E-value=49 Score=21.14 Aligned_cols=39 Identities=8% Similarity=0.066 Sum_probs=26.3
Q ss_pred ChHHHHHHHHhhhccchhhHHHHHHHHHHHHHcCCCHHHHHHHcC
Q 030521 101 SNDELKEMILVANYLNIKDMLDYLTETVANRIKNKSVEYVRKFFG 145 (176)
Q Consensus 101 ~~~~l~~Ll~AA~~L~I~~L~~l~~~~iA~~i~gks~eeir~~f~ 145 (176)
..++-.-|+.|-..++ . -=..||..+.++|+.|+|..|.
T Consensus 22 T~eEd~~Ll~~v~~~G-~-----~W~~IA~~v~~RT~~qcr~r~~ 60 (79)
T 2yus_A 22 TEQETLLLLEALEMYK-D-----DWNKVSEHVGSRTQDECILHFL 60 (79)
T ss_dssp CHHHHHHHHHHHHHSS-S-----CHHHHHHHHSSCCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhC-C-----CHHHHHHHcCCCCHHHHHHHHH
Confidence 4444455555544455 1 2367888889999999999875
No 64
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=26.29 E-value=1e+02 Score=23.74 Aligned_cols=78 Identities=14% Similarity=0.198 Sum_probs=53.6
Q ss_pred chhhhhhcc-CCChHHHHHHHHhhhccchhhHHHHHHHHHHHHHc---------CCCHHHHHHHcCCCCCCC-HHHHHHH
Q 030521 90 KTFNEEFGK-SKSNDELKEMILVANYLNIKDMLDYLTETVANRIK---------NKSVEYVRKFFGIENDFT-PEEEEAA 158 (176)
Q Consensus 90 ~~wd~eFl~-~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~iA~~i~---------gks~eeir~~f~i~~d~t-~EEe~~i 158 (176)
...-.+|+. .++.+..+.++..|...+.+.|.+.|..+|+..+. .-+.+.+..++.= +++. +.|++-.
T Consensus 128 ~~~c~~~L~~~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L~~~~l~~lL~~-d~L~v~sE~~vf 206 (279)
T 3i3n_A 128 KEFCGEFLKKKLHLSNCVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQDEEFYTLPFHLIRDWLSD-LEITVDSEEVLF 206 (279)
T ss_dssp HHHHHHHHHHHCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTHHHHTTSSGGGGSCHHHHHHHHTC-SSCCCSCHHHHH
T ss_pred HHHHHHHHHHcCCcchHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCcChhcCCHHHHHHHhcC-cCCCCCCHHHHH
Confidence 333344544 24777899999999999999999999999976542 3478888888874 3343 2233444
Q ss_pred HHhcccccCC
Q 030521 159 RKEYEWAFEG 168 (176)
Q Consensus 159 ~~e~~w~~~~ 168 (176)
+--..|+..+
T Consensus 207 ~av~~W~~~~ 216 (279)
T 3i3n_A 207 ETVLKWVQRN 216 (279)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 5556687654
No 65
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.66 E-value=46 Score=21.98 Aligned_cols=47 Identities=2% Similarity=0.046 Sum_probs=36.8
Q ss_pred CCChHHHHHHHHhhhccchhhHHHHHHHHHHHHHc---------CCCHHHHHHHcC
Q 030521 99 SKSNDELKEMILVANYLNIKDMLDYLTETVANRIK---------NKSVEYVRKFFG 145 (176)
Q Consensus 99 ~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~iA~~i~---------gks~eeir~~f~ 145 (176)
.++.+..+.++..|..++.+.|.+.|-+++...+. .-+.+++..++.
T Consensus 7 ~L~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~~v~~~~eFl~L~~~~L~~lL~ 62 (105)
T 2eqx_A 7 GVQVGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHLPHRLLTDIIS 62 (105)
T ss_dssp CCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTCHHHHTSHHHHHSCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcccHhhCCHHHHHHHHc
Confidence 35788899999999999999999999999865432 345666666665
No 66
>3g0m_A Cysteine desulfuration protein SUFE; YNHA, csgid, national I of allergy and infectious diseases, niaid, hydrolase, struc genomics; 1.76A {Salmonella typhimurium LT2} SCOP: d.224.1.1 PDB: 1mzg_A
Probab=25.52 E-value=60 Score=23.21 Aligned_cols=28 Identities=14% Similarity=0.263 Sum_probs=19.7
Q ss_pred HHHHHHHHcCCCHHHHHHH--------cCCCCCCCH
Q 030521 125 TETVANRIKNKSVEYVRKF--------FGIENDFTP 152 (176)
Q Consensus 125 ~~~iA~~i~gks~eeir~~--------f~i~~d~t~ 152 (176)
+..+...+.|+|++||.++ +|+..-+||
T Consensus 85 ~alL~~~~~G~tp~eIl~~d~~~f~~~lGL~~~LSp 120 (141)
T 3g0m_A 85 MAVVFILYHQMTAQDIVHFDVRPWFEKMALAQHLTP 120 (141)
T ss_dssp HHHHHHHHTTCBHHHHHHCCCHHHHHHHTCGGGSCH
T ss_pred HHHHHHHHcCCCHHHHHhCCHHHHHHHcCchhhcCc
Confidence 3444555689999999754 577766776
No 67
>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A
Probab=25.24 E-value=68 Score=22.93 Aligned_cols=38 Identities=13% Similarity=0.129 Sum_probs=26.1
Q ss_pred HHHhhhccchhhHHHHHH-HHHHHHHcCCCHHHHHHHcC
Q 030521 108 MILVANYLNIKDMLDYLT-ETVANRIKNKSVEYVRKFFG 145 (176)
Q Consensus 108 Ll~AA~~L~I~~L~~l~~-~~iA~~i~gks~eeir~~f~ 145 (176)
.|..+.|-.-=.-+..++ ..++.+++|||.+|.+++.+
T Consensus 55 ~I~d~~f~~~GCais~ASaS~mte~v~Gkt~~Ea~~i~~ 93 (147)
T 1xjs_A 55 IVEDAKFEGEGCSISMASASMMTQAIKGKDIETALSMSK 93 (147)
T ss_dssp BCCEEEEEEESSHHHHHHHHHHHHHHTTSBHHHHHHHHH
T ss_pred eEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 455555555555555554 45677999999999988753
No 68
>1jr5_A 10 kDa anti-sigma factor; all-alpha, helix-turn-helix, coiled-coil, transcription; NMR {Enterobacteria phage T4} SCOP: a.150.1.1 PDB: 1tkv_A 1tl6_A 1tlh_A
Probab=25.21 E-value=44 Score=22.20 Aligned_cols=31 Identities=29% Similarity=0.512 Sum_probs=25.8
Q ss_pred CHHHHHHHcCCCCCCCHHHHHHHHHhcccccCCC
Q 030521 136 SVEYVRKFFGIENDFTPEEEEAARKEYEWAFEGV 169 (176)
Q Consensus 136 s~eeir~~f~i~~d~t~EEe~~i~~e~~w~~~~~ 169 (176)
|..-.|++++ ++|++|.+++.+|..|-+++|
T Consensus 50 t~~sfr~m~~---~lt~~ek~elieeFn~G~e~i 80 (90)
T 1jr5_A 50 NQNSFRKIVS---ELTQEDKKTLIDEFNEGFEGV 80 (90)
T ss_dssp CSHHHHHHHH---TCCHHHHHHHHTTSSSSSTTT
T ss_pred HHHHHHHHHH---HCCHHHHHHHHHHHhccchHH
Confidence 4556677776 699999999999999999876
No 69
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A
Probab=25.19 E-value=59 Score=22.72 Aligned_cols=37 Identities=16% Similarity=0.099 Sum_probs=24.6
Q ss_pred HHHhhhccchhhHHHHH-HHHHHHHHcCCCHHHHHHHc
Q 030521 108 MILVANYLNIKDMLDYL-TETVANRIKNKSVEYVRKFF 144 (176)
Q Consensus 108 Ll~AA~~L~I~~L~~l~-~~~iA~~i~gks~eeir~~f 144 (176)
.|.-+.|-.-=.-+..+ +..++++++|||.+|.+++.
T Consensus 53 ~I~d~~f~~~GCais~ASaS~~te~i~Gkt~~ea~~i~ 90 (129)
T 3lvl_A 53 IIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIK 90 (129)
T ss_dssp CEEEEEEEEESCHHHHHHHHHHHHHHTTCCHHHHHTCC
T ss_pred eEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 34555555554444444 45667899999999998764
No 70
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.75 E-value=54 Score=20.31 Aligned_cols=20 Identities=15% Similarity=0.270 Sum_probs=17.0
Q ss_pred HHHHHHHHcCCCHHHHHHHc
Q 030521 125 TETVANRIKNKSVEYVRKFF 144 (176)
Q Consensus 125 ~~~iA~~i~gks~eeir~~f 144 (176)
-..||..+.|+|..++|..+
T Consensus 36 W~~IA~~~~~Rt~~qcr~r~ 55 (75)
T 2yum_A 36 WQKIADELGNRTAKQVASQV 55 (75)
T ss_dssp HHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHH
Confidence 46778888999999999877
No 71
>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}
Probab=24.31 E-value=33 Score=22.72 Aligned_cols=25 Identities=12% Similarity=0.262 Sum_probs=19.3
Q ss_pred HHHHHHHcCCCHHHHHHHcCCCCCCC
Q 030521 126 ETVANRIKNKSVEYVRKFFGIENDFT 151 (176)
Q Consensus 126 ~~iA~~i~gks~eeir~~f~i~~d~t 151 (176)
+.++.. -|.|++|=|+.||++.|+.
T Consensus 36 RHL~~~-hgltpeeYR~kwGlp~dyP 60 (87)
T 2jsp_A 36 RHLTTH-HSMTPEEYREKWDLPVDYP 60 (87)
T ss_dssp HHHHHT-TCSCHHHHHHHTTCGGGCC
T ss_pred HHHHHc-cCCCHHHHHHHhCCCCCCc
Confidence 455431 3999999999999999863
No 72
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=24.10 E-value=26 Score=22.22 Aligned_cols=21 Identities=19% Similarity=0.142 Sum_probs=17.4
Q ss_pred HHHHHHHHcCCCHHHHHHHcC
Q 030521 125 TETVANRIKNKSVEYVRKFFG 145 (176)
Q Consensus 125 ~~~iA~~i~gks~eeir~~f~ 145 (176)
=..||..+-|+|..++|..|.
T Consensus 44 W~~IA~~vpGRT~~qcr~Ry~ 64 (73)
T 2cqr_A 44 WDKIARCVPSKSKEDCIARYK 64 (73)
T ss_dssp HHHHGGGCSSSCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHH
Confidence 357888889999999998764
No 73
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=24.08 E-value=21 Score=24.12 Aligned_cols=84 Identities=8% Similarity=0.039 Sum_probs=50.3
Q ss_pred CCCEEEecHHHHHHhH--HHHHHHhcCC-CCCCCcccccCCCChHHHHHHHHHHHHhhhccCCCCCccccchhhhhhccC
Q 030521 23 DGHLFEVEEPVAMEFE--IVKSFFDEND-DASEDTVVPLPNVSAAPLSYIIEFCRAHVEFRKKRSPKQEVKTFNEEFGKS 99 (176)
Q Consensus 23 DG~~f~V~~~~a~~S~--~l~~ll~~~~-~~~~~~~Ipl~~v~s~~L~~Iie~c~~h~~~~~~~~~~~~~~~wd~eFl~~ 99 (176)
.|+.|.++...+..-+ .|... .... ..++...+-+. =++..++.|+.|++.-+-. ++.
T Consensus 7 GG~~f~t~~~TL~~~p~s~L~~~-~~~~~~~~~~~~~FiD-Rdp~~F~~ILnflR~g~l~---------~p~-------- 67 (105)
T 1nn7_A 7 SGTRFQTWQDTLERYPDTLLGSS-ERDFFYHPETQQYFFD-RDPDIFRHILNFYRTGKLH---------YPR-------- 67 (105)
T ss_dssp TTEEEEECHHHHHTSCSSSTTSG-GGGGGEEGGGTEEEEC-SCTTTHHHHHHHHHHSCBC---------CCT--------
T ss_pred CCEEEEEeHHHHhcCCCcccccc-CCcccccCCCCcEEEe-CCcHHHHHHHHHHhcCCCC---------CCC--------
Confidence 4899999998875421 12110 0000 00112344443 6889999999999974321 110
Q ss_pred CChHHHHHHHHhhhccchhhH-HHHHHHH
Q 030521 100 KSNDELKEMILVANYLNIKDM-LDYLTET 127 (176)
Q Consensus 100 ~~~~~l~~Ll~AA~~L~I~~L-~~l~~~~ 127 (176)
+. .+-.|...|.|.+|.+| ++.||..
T Consensus 68 -~~-~~~~l~~Ea~fy~i~~l~~~~cc~~ 94 (105)
T 1nn7_A 68 -HE-CISAYDEELAFFGLIPEIIGDCCYE 94 (105)
T ss_dssp -TS-CHHHHHHHHHHHTCCSCCBCHHHHH
T ss_pred -Cc-CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 11 25678999999999998 4677754
No 74
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=23.70 E-value=29 Score=23.89 Aligned_cols=91 Identities=7% Similarity=-0.061 Sum_probs=54.3
Q ss_pred CcEEEEeCCCCEEEecHHHHHHh--HHHHHHHhcCC-CCCCCcccccCCCChHHHHHHHHHHHHhhhccCCCCCccccch
Q 030521 15 KKISLKTADGHLFEVEEPVAMEF--EIVKSFFDEND-DASEDTVVPLPNVSAAPLSYIIEFCRAHVEFRKKRSPKQEVKT 91 (176)
Q Consensus 15 ~~i~L~s~DG~~f~V~~~~a~~S--~~l~~ll~~~~-~~~~~~~Ipl~~v~s~~L~~Iie~c~~h~~~~~~~~~~~~~~~ 91 (176)
..|+|-- .|+.|......+..- ..|..|+.... ...+...+=+ .-++..++.|+.|++.-+-.- +.
T Consensus 5 ~~V~LNV-GG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnylR~G~l~~---------p~ 73 (115)
T 3kvt_A 5 NRVIINV-GGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFF-DRHPGVFAQIINYYRSGKLHY---------PT 73 (115)
T ss_dssp CEEEEEE-TTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEE-CSCTTTHHHHHHHHHHSCBCC---------CS
T ss_pred CEEEEEE-CCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEE-ecChHHHHHHHHHhcCCCCCC---------CC
Confidence 3444444 499999999987652 23444443221 1112334544 378999999999998743211 10
Q ss_pred hhhhhccCCChHHHHHHHHhhhccchhhHHHH-HHH
Q 030521 92 FNEEFGKSKSNDELKEMILVANYLNIKDMLDY-LTE 126 (176)
Q Consensus 92 wd~eFl~~~~~~~l~~Ll~AA~~L~I~~L~~l-~~~ 126 (176)
+. .+..+...|.|.+|.++.-- ||.
T Consensus 74 ---------~~-~~~~~~~Ea~fy~i~~~~l~~CC~ 99 (115)
T 3kvt_A 74 ---------DV-CGPLFEEELEFWGLDSNQVEPCCW 99 (115)
T ss_dssp ---------SS-CHHHHHHHHHHHTCCGGGBCGGGS
T ss_pred ---------cc-cHHHHHHHHHHhCCChHHHHHHHH
Confidence 11 13467889999999887533 443
No 75
>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}
Probab=23.54 E-value=34 Score=25.54 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=14.0
Q ss_pred CccccccccCc---CCCCcEEEEeCC-CCEEEecH
Q 030521 1 MAEESSSSCSA---QATKKISLKTAD-GHLFEVEE 31 (176)
Q Consensus 1 ~~~~~~~~~~~---~~~~~i~L~s~D-G~~f~V~~ 31 (176)
|.|.+++.|.+ .+-..++|...| |+.+..+.
T Consensus 1 ~~~~~~~~~~~~~~~~~pdF~l~d~~~G~~v~Ls~ 35 (207)
T 2r37_A 1 MQEKSKMDCHGGISGTIYEYGALTIDGEEYIPFKQ 35 (207)
T ss_dssp --------------CCGGGCEEEBTTSSCEEEGGG
T ss_pred CccchhccccccccCccCCeEeeeCCCCCEEcHHH
Confidence 67889999966 334558899999 88876553
No 76
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=23.49 E-value=65 Score=19.01 Aligned_cols=20 Identities=15% Similarity=0.297 Sum_probs=16.3
Q ss_pred HHHHHHHHc-CCCHHHHHHHc
Q 030521 125 TETVANRIK-NKSVEYVRKFF 144 (176)
Q Consensus 125 ~~~iA~~i~-gks~eeir~~f 144 (176)
=..||..+. |+|+.+.|..+
T Consensus 32 W~~IA~~~~~~Rt~~qcr~r~ 52 (58)
T 2elk_A 32 WADIADYVGNARTKEECRDHY 52 (58)
T ss_dssp HHHHHHHHCSSCCHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHH
Confidence 356788888 89999999865
No 77
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=23.39 E-value=55 Score=21.73 Aligned_cols=12 Identities=17% Similarity=0.338 Sum_probs=10.5
Q ss_pred cCCCHHHHHHHc
Q 030521 133 KNKSVEYVRKFF 144 (176)
Q Consensus 133 ~gks~eeir~~f 144 (176)
.|+|.+||+.+|
T Consensus 55 ~G~Sd~eI~~~m 66 (90)
T 2kw0_A 55 EGKSKKEIVDYM 66 (90)
T ss_dssp HTCCHHHHHHHH
T ss_pred cCCCHHHHHHHH
Confidence 699999999884
No 78
>2ra2_A Putative lipoprotein; X-RAY, NESG, STR88A, Q7CPV8, structural genomics, PSI-2, protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.38.1.6
Probab=23.36 E-value=55 Score=20.36 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=11.1
Q ss_pred CCCCcEEEEeCCCCEEEe
Q 030521 12 QATKKISLKTADGHLFEV 29 (176)
Q Consensus 12 ~~~~~i~L~s~DG~~f~V 29 (176)
|+++.+.+.+.||+.+..
T Consensus 1 ~sSS~yVitt~DG~~IvT 18 (64)
T 2ra2_A 1 MSGPNYVMHTNDGRSIVT 18 (64)
T ss_dssp ---CCEEEEETTSCEEEC
T ss_pred CCCCCEEEEeCCCcEEEc
Confidence 455667788888887753
No 79
>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2
Probab=23.33 E-value=88 Score=22.70 Aligned_cols=38 Identities=11% Similarity=0.009 Sum_probs=25.7
Q ss_pred HHHhhhccchhhHHHHHH-HHHHHHHcCCCHHHHHHHcC
Q 030521 108 MILVANYLNIKDMLDYLT-ETVANRIKNKSVEYVRKFFG 145 (176)
Q Consensus 108 Ll~AA~~L~I~~L~~l~~-~~iA~~i~gks~eeir~~f~ 145 (176)
.|.-+.|-.-=.-+..++ ..++.+++|||.+|.+++.+
T Consensus 54 ~I~d~~F~~~GCais~ASaS~mte~v~Gkt~~Ea~~i~~ 92 (159)
T 1su0_B 54 KIEDIAFAGNGCTISTASSSMMTDAVIGKSKEEALALAD 92 (159)
T ss_dssp SEEEEEEEEECCHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred EEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 455555555555555554 45677999999999988754
No 80
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=23.12 E-value=57 Score=21.33 Aligned_cols=12 Identities=17% Similarity=0.257 Sum_probs=10.5
Q ss_pred cCCCHHHHHHHc
Q 030521 133 KNKSVEYVRKFF 144 (176)
Q Consensus 133 ~gks~eeir~~f 144 (176)
.|+|.+||+.+|
T Consensus 58 ~G~sd~eI~~~~ 69 (84)
T 2hl7_A 58 QGKSDGEIVDYM 69 (84)
T ss_dssp HTCCHHHHHHHH
T ss_pred cCCCHHHHHHHH
Confidence 699999999875
No 81
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=22.52 E-value=81 Score=23.93 Aligned_cols=76 Identities=11% Similarity=0.123 Sum_probs=49.0
Q ss_pred hhhcc-CCChHHHHHHHHhhhccchhhHHHHHHHHHHHHHc---------CCCHHHHHHHcCCCCCCC-HHHHHHHHHhc
Q 030521 94 EEFGK-SKSNDELKEMILVANYLNIKDMLDYLTETVANRIK---------NKSVEYVRKFFGIENDFT-PEEEEAARKEY 162 (176)
Q Consensus 94 ~eFl~-~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~iA~~i~---------gks~eeir~~f~i~~d~t-~EEe~~i~~e~ 162 (176)
.+|+. .++.+..+.++..|...+.+.|.+.|..+|+..+. ..+.+.+..++.= +++. +.|++-.+--.
T Consensus 124 ~~~L~~~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L~~~~l~~lL~~-d~L~v~~E~~v~~av~ 202 (256)
T 3hve_A 124 CEFLEGCIAAENCIGIRDFALHYCLHHVHYLATEYLETHFRDVSSTEEFLELSPQKLKEVISL-EKLNVGNERYVFEAVI 202 (256)
T ss_dssp HHHHHHTCCSSTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTCHHHHSSCHHHHHHHHHC-C-------CTTHHHHT
T ss_pred HHHHHhhCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhCCcchhcCCHHHHHHHHcc-CCCCCCCHHHHHHHHH
Confidence 34443 34667889999999999999999999999976543 4467777777663 2344 33434445567
Q ss_pred ccccCCCC
Q 030521 163 EWAFEGVD 170 (176)
Q Consensus 163 ~w~~~~~~ 170 (176)
.|+..++.
T Consensus 203 ~W~~~~~~ 210 (256)
T 3hve_A 203 RWIAHDTE 210 (256)
T ss_dssp TTCCC--C
T ss_pred HHHHcCHH
Confidence 89887654
No 82
>1vfr_A NAD(P)H\:FMN oxidoreductase; bioluminescence; HET: FMN; 1.80A {Aliivibrio fischeri} SCOP: d.90.1.1 PDB: 1v5y_A* 1v5z_A*
Probab=21.92 E-value=18 Score=26.73 Aligned_cols=19 Identities=16% Similarity=0.377 Sum_probs=15.0
Q ss_pred HcCCCHHHHHHHcCCC-CCC
Q 030521 132 IKNKSVEYVRKFFGIE-NDF 150 (176)
Q Consensus 132 i~gks~eeir~~f~i~-~d~ 150 (176)
+.|-..+++++.|||+ +++
T Consensus 164 ~~~~~~~~v~~~l~lp~~~~ 183 (218)
T 1vfr_A 164 MEGIDPELLSEIFADELKGY 183 (218)
T ss_dssp ECCSCHHHHHHHTTTTTTTE
T ss_pred ccccCHHHHHHHhCCCcccc
Confidence 3456789999999998 663
No 83
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=21.83 E-value=1e+02 Score=23.48 Aligned_cols=65 Identities=15% Similarity=0.295 Sum_probs=42.4
Q ss_pred ChHHHHHHHHhhhccchhhHHHHH----HHHHHHH----HcCCCHHHHHHHcCCCCCCCHHHHHHHHHhcccccCC
Q 030521 101 SNDELKEMILVANYLNIKDMLDYL----TETVANR----IKNKSVEYVRKFFGIENDFTPEEEEAARKEYEWAFEG 168 (176)
Q Consensus 101 ~~~~l~~Ll~AA~~L~I~~L~~l~----~~~iA~~----i~gks~eeir~~f~i~~d~t~EEe~~i~~e~~w~~~~ 168 (176)
+-..++.+...+.......|++.- -..++.. ...-+...+.+.+|.+ +++|-++.-++..|...+
T Consensus 149 nY~kff~l~~~~p~~~~~~~~~~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~---s~~e~~~f~~~~gw~i~d 221 (229)
T 4b0z_A 149 AFDKVASMIRSCNFPEFSYFMKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLE---NTKETEKLAEERGWDIRD 221 (229)
T ss_dssp CHHHHHHHHHTCCCGGGHHHHHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCS---SHHHHHHHHHHHTCEEET
T ss_pred CHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCC---CHHHHHHHHHHcCCEEeC
Confidence 556677777776544434444432 2222332 2345799999999986 477888888899998864
No 84
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=21.49 E-value=1e+02 Score=20.50 Aligned_cols=19 Identities=26% Similarity=0.480 Sum_probs=13.9
Q ss_pred HHHHHHH-----cCCCHHHHHHHc
Q 030521 126 ETVANRI-----KNKSVEYVRKFF 144 (176)
Q Consensus 126 ~~iA~~i-----~gks~eeir~~f 144 (176)
-.|+.+. .+.|.++|+..|
T Consensus 53 ~vI~DRy~~~~~~~Rt~EdLK~Ry 76 (93)
T 3hm5_A 53 VVIHDRYDHQQFKKRSVEDLKERY 76 (93)
T ss_dssp HHHHHHSCTTTSCCCCHHHHHHHH
T ss_pred eeehhhhccCCCCCCCHHHHHHHH
Confidence 3567777 468999998765
No 85
>3d55_A Antitoxin, uncharacterized protein RV3357/MT3465; tetramer, toxin neutraliSer, toxin inhibitor; 2.13A {Mycobacterium tuberculosis} PDB: 3cto_A 3oei_A* 3oei_E*
Probab=21.46 E-value=51 Score=21.32 Aligned_cols=47 Identities=26% Similarity=0.229 Sum_probs=19.9
Q ss_pred ChHHHHHHHHhhhccchhhHHHHHHHHHHHHHcCC-----CHHHHHHHcCCC
Q 030521 101 SNDELKEMILVANYLNIKDMLDYLTETVANRIKNK-----SVEYVRKFFGIE 147 (176)
Q Consensus 101 ~~~~l~~Ll~AA~~L~I~~L~~l~~~~iA~~i~gk-----s~eeir~~f~i~ 147 (176)
+.+..-.|......|..+.+.+...+.++..-.|+ +.+|+++.||+.
T Consensus 39 s~e~y~~l~et~~ll~~~~~~~~l~~a~~~~~~G~~~~~~~l~el~~~lg~~ 90 (91)
T 3d55_A 39 SADDYDAWQETVYLLRSPENARRLMEAVARDKAGHSAFTKSVDELREMAGGE 90 (91)
T ss_dssp EHHHHHHHHHHHHHTTSHHHHHHHHHHHTC----------------------
T ss_pred eHHHHhhHHHHHHHHhChHHHHHHHHHHHHHHcCCCccCCCHHHHHHHhCCC
Confidence 44555555666667777777777777776655554 458899999874
No 86
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=26.75 E-value=20 Score=22.76 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=17.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHcC
Q 030521 123 YLTETVANRIKNKSVEYVRKFFG 145 (176)
Q Consensus 123 l~~~~iA~~i~gks~eeir~~f~ 145 (176)
-+-.+||.++ ++|++|+...|.
T Consensus 37 ~tfa~iA~~L-nks~~QV~~RF~ 58 (70)
T 2lr8_A 37 KTFAYLAAKL-DKNPNQVSERFQ 58 (70)
Confidence 3456788888 899999987774
No 87
>1y14_A B32, RPB4, DNA-directed RNA polymerase II 32 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: a.60.8.2
Probab=21.09 E-value=1.7e+02 Score=22.03 Aligned_cols=43 Identities=12% Similarity=0.155 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHHHHcCCCHHHHHHHcCCCC-CCCHHHHHHHHHh
Q 030521 118 KDMLDYLTETVANRIKNKSVEYVRKFFGIEN-DFTPEEEEAARKE 161 (176)
Q Consensus 118 ~~L~~l~~~~iA~~i~gks~eeir~~f~i~~-d~t~EEe~~i~~e 161 (176)
.+|-..-...|+++ .-.|++|+|.++.-.. =+++|+.++|-..
T Consensus 136 ~kL~efE~aqLaNL-~PeTadEaraLIpSle~rlsdEeLeeILd~ 179 (187)
T 1y14_A 136 TGLHPFEVAQLGSL-ACDTADEAKTLIPSLNNKISDDELERILKE 179 (187)
T ss_dssp TTCCHHHHHHHHHS-CCSSHHHHHHHSGGGTTTSCHHHHHHHHHH
T ss_pred cCCCHHHHHHcCcC-CCCCHHHHHHHHHhhccCCCHHHHHHHHHH
Confidence 44666666667663 6689999998875444 3889999888654
No 88
>3kf9_B MLCK2, myosin light chain kinase 2, skeletal/cardiac MUS; centrin, cell cycle, cell divisio mitosis, calmodulin-binding; 2.60A {Scherffelia dubia}
Probab=20.70 E-value=36 Score=16.58 Aligned_cols=11 Identities=18% Similarity=-0.064 Sum_probs=8.1
Q ss_pred HHHHHHhhhcc
Q 030521 105 LKEMILVANYL 115 (176)
Q Consensus 105 l~~Ll~AA~~L 115 (176)
-|..+.|||+|
T Consensus 7 ~f~av~Aanrl 17 (22)
T 3kf9_B 7 NFIAVSAANRF 17 (26)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 46677888876
No 89
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=20.63 E-value=74 Score=19.57 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=17.4
Q ss_pred HHHHHHHHcCCCHHHHHHHcC
Q 030521 125 TETVANRIKNKSVEYVRKFFG 145 (176)
Q Consensus 125 ~~~iA~~i~gks~eeir~~f~ 145 (176)
=..||..+.|+|..++|..+.
T Consensus 31 W~~Ia~~~~~Rt~~q~k~r~~ 51 (72)
T 2cu7_A 31 WTKISKLIGSRTVLQVKSYAR 51 (72)
T ss_dssp HHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHH
Confidence 367888899999999998754
No 90
>3hou_D DNA-directed RNA polymerase II subunit RPB4; RNA polymerase II, metal-binding, transcription bubble; HET: BRU; 3.20A {Saccharomyces cerevisiae} PDB: 1nt9_D 1y1w_D 1y1y_D 1y77_D* 2b63_D* 2b8k_D 2ja5_D* 2ja6_D* 2ja7_D* 2ja8_D* 2r7z_D 2r92_D 2r93_D 1y1v_D* 3fki_D 3h3v_E 2vum_D* 3hov_D* 3how_D* 3hox_D* ...
Probab=20.45 E-value=1.9e+02 Score=22.31 Aligned_cols=43 Identities=12% Similarity=0.155 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHHHHcCCCHHHHHHHcCCCC-CCCHHHHHHHHHh
Q 030521 118 KDMLDYLTETVANRIKNKSVEYVRKFFGIEN-DFTPEEEEAARKE 161 (176)
Q Consensus 118 ~~L~~l~~~~iA~~i~gks~eeir~~f~i~~-d~t~EEe~~i~~e 161 (176)
.+|...-.+.||+. .-.+++|.|.++.--. -+++++.++|-.+
T Consensus 170 ~gLheFEiAqLANL-cPeTaDEARALIPSL~~k~sDEeLqeILde 213 (221)
T 3hou_D 170 TGLHPFEVAQLGSL-ACDTADEAKTLIPSLNNKISDDELERILKE 213 (221)
T ss_dssp SCCCHHHHHHHHHS-CCCSHHHHHHHCTTCTTSSCHHHHHHHHHH
T ss_pred cCCChHHhheeccc-CCCCHHHHHHHHHhhcccCCHHHHHHHHHH
Confidence 55666666667664 5688999999977554 4889998888654
No 91
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=20.35 E-value=58 Score=26.50 Aligned_cols=42 Identities=14% Similarity=0.271 Sum_probs=31.7
Q ss_pred CCChHHHHHHHHhhhccchhhHHHHHHHHHHHHHcCCCHHHHHHHcC
Q 030521 99 SKSNDELKEMILVANYLNIKDMLDYLTETVANRIKNKSVEYVRKFFG 145 (176)
Q Consensus 99 ~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~iA~~i~gks~eeir~~f~ 145 (176)
.|+.......+.|..-.+-.. ...||.-+.|||++|++.++.
T Consensus 112 ~W~rrdf~~Fi~a~~kyGr~~-----~~~IA~ev~~Kt~eEV~~Y~~ 153 (304)
T 1ofc_X 112 AWTKRDFNQFIKANEKYGRDD-----IDNIAKDVEGKTPEEVIEYNA 153 (304)
T ss_dssp TCCHHHHHHHHHHHHHHCTTC-----HHHHTTSSTTCCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCHHH-----HHHHHHHhcCCCHHHHHHHHH
Confidence 467888888888866666544 356777778999999999865
No 92
>2c35_A Human RPB4, DNA-directed RNA polymerase II 16 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: a.60.8.2
Probab=20.22 E-value=2.4e+02 Score=20.12 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHcCCCC-CCCHHHHHHHHHh
Q 030521 119 DMLDYLTETVANRIKNKSVEYVRKFFGIEN-DFTPEEEEAARKE 161 (176)
Q Consensus 119 ~L~~l~~~~iA~~i~gks~eeir~~f~i~~-d~t~EEe~~i~~e 161 (176)
+|...-...|+++ .-.|++|+|.++--.. -+|+|+.++|-..
T Consensus 101 ~L~~~E~a~L~NL-~P~t~dEar~lipsl~~r~sdEeLe~ILd~ 143 (152)
T 2c35_A 101 KLHKFELACLANL-CPETAEESKALIPSLEGRFEDEELQQILDD 143 (152)
T ss_dssp SCCHHHHHHHHHH-CCSSHHHHHHHCGGGTTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHhccC-CCCCHHHHHHHHHhhccCCCHHHHHHHHHH
Confidence 3666666677765 5679999998876444 4899998888654
No 93
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=20.10 E-value=1.1e+02 Score=15.94 Aligned_cols=17 Identities=12% Similarity=0.143 Sum_probs=13.9
Q ss_pred HHcCCCHHHHHHHcCCC
Q 030521 131 RIKNKSVEYVRKFFGIE 147 (176)
Q Consensus 131 ~i~gks~eeir~~f~i~ 147 (176)
...|.|..+|-+.|||.
T Consensus 18 ~~~g~s~~~IA~~lgis 34 (51)
T 1tc3_C 18 KLLNVSLHEMSRKISRS 34 (51)
T ss_dssp HHTTCCHHHHHHHHTCC
T ss_pred HHcCCCHHHHHHHHCcC
Confidence 34688999999999985
Done!