Query 030523
Match_columns 175
No_of_seqs 284 out of 1867
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 15:01:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030523.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030523hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02954 DIM1 Dim1 family; Dim1 99.9 9.3E-22 2E-26 140.6 10.5 86 83-171 2-87 (114)
2 KOG0910 Thioredoxin-like prote 99.9 1.1E-21 2.4E-26 145.0 8.4 87 77-167 44-130 (150)
3 PHA02278 thioredoxin-like prot 99.8 6.7E-21 1.4E-25 134.4 10.0 86 81-170 2-90 (103)
4 KOG0907 Thioredoxin [Posttrans 99.8 6.6E-21 1.4E-25 134.9 9.2 87 83-171 7-93 (106)
5 cd02989 Phd_like_TxnDC9 Phosdu 99.8 6.3E-20 1.4E-24 131.3 10.5 88 76-169 5-92 (113)
6 cd02986 DLP Dim1 family, Dim1- 99.8 8.3E-20 1.8E-24 130.0 9.7 79 83-164 2-80 (114)
7 cd02985 TRX_CDSP32 TRX family, 99.8 1.3E-19 2.8E-24 127.4 10.6 85 82-169 2-88 (103)
8 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 1.4E-19 3E-24 126.3 10.4 84 77-166 3-86 (101)
9 cd03006 PDI_a_EFP1_N PDIa fami 99.8 2.2E-19 4.9E-24 128.6 10.6 85 77-164 11-96 (113)
10 cd02948 TRX_NDPK TRX domain, T 99.8 2.9E-19 6.2E-24 125.4 10.6 86 79-170 3-89 (102)
11 PLN00410 U5 snRNP protein, DIM 99.8 2.3E-19 4.9E-24 132.9 9.5 85 76-163 4-89 (142)
12 cd02957 Phd_like Phosducin (Ph 99.8 2.7E-19 6E-24 127.7 9.4 90 76-170 5-94 (113)
13 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 6.8E-19 1.5E-23 123.2 10.0 77 82-162 7-83 (104)
14 cd02956 ybbN ybbN protein fami 99.8 2E-18 4.2E-23 119.1 9.9 81 85-168 2-82 (96)
15 PTZ00051 thioredoxin; Provisio 99.8 2.4E-18 5.3E-23 119.0 10.4 88 77-170 2-89 (98)
16 COG3118 Thioredoxin domain-con 99.8 1.1E-18 2.5E-23 141.4 9.8 89 77-168 25-113 (304)
17 cd02987 Phd_like_Phd Phosducin 99.8 1.7E-18 3.7E-23 132.9 10.2 94 74-171 61-154 (175)
18 cd02996 PDI_a_ERp44 PDIa famil 99.8 3.4E-18 7.3E-23 120.7 9.9 81 77-163 3-89 (108)
19 cd02965 HyaE HyaE family; HyaE 99.8 2.7E-18 5.8E-23 122.1 9.3 83 82-169 16-100 (111)
20 cd02962 TMX2 TMX2 family; comp 99.8 5.7E-18 1.2E-22 127.2 11.4 92 75-170 28-126 (152)
21 PF00085 Thioredoxin: Thioredo 99.8 3.7E-18 8E-23 118.2 9.7 84 82-169 5-88 (103)
22 cd03065 PDI_b_Calsequestrin_N 99.8 5.2E-18 1.1E-22 122.6 10.2 85 76-165 10-100 (120)
23 cd02963 TRX_DnaJ TRX domain, D 99.8 4.2E-18 9.1E-23 121.3 8.8 85 82-168 10-95 (111)
24 cd02999 PDI_a_ERp44_like PDIa 99.7 9.1E-18 2E-22 117.6 9.5 79 85-168 8-87 (100)
25 PRK09381 trxA thioredoxin; Pro 99.7 1.7E-17 3.8E-22 117.1 10.3 88 76-168 4-91 (109)
26 cd02984 TRX_PICOT TRX domain, 99.7 1.8E-17 3.9E-22 114.2 9.6 83 82-167 1-83 (97)
27 cd03002 PDI_a_MPD1_like PDI fa 99.7 2.1E-17 4.6E-22 116.2 9.7 80 79-163 4-85 (109)
28 PRK10996 thioredoxin 2; Provis 99.7 3.4E-17 7.4E-22 121.2 10.3 82 82-168 41-122 (139)
29 cd02994 PDI_a_TMX PDIa family, 99.7 4.3E-17 9.4E-22 113.4 10.1 80 77-164 3-83 (101)
30 cd03005 PDI_a_ERp46 PDIa famil 99.7 4.4E-17 9.5E-22 113.1 10.0 85 78-169 3-90 (102)
31 cd03001 PDI_a_P5 PDIa family, 99.7 5E-17 1.1E-21 113.0 9.9 81 77-162 2-82 (103)
32 KOG0908 Thioredoxin-like prote 99.7 1E-17 2.2E-22 132.5 7.0 89 75-167 1-89 (288)
33 cd02997 PDI_a_PDIR PDIa family 99.7 1.5E-16 3.2E-21 110.6 10.6 86 77-168 2-91 (104)
34 cd02993 PDI_a_APS_reductase PD 99.7 1.3E-16 2.8E-21 113.0 9.9 85 77-163 3-89 (109)
35 PTZ00443 Thioredoxin domain-co 99.7 1.5E-16 3.2E-21 126.4 11.1 90 76-167 31-121 (224)
36 TIGR01068 thioredoxin thioredo 99.7 4.2E-16 9E-21 107.3 10.6 82 83-168 3-84 (101)
37 cd03000 PDI_a_TMX3 PDIa family 99.7 1.9E-16 4.1E-21 111.1 8.9 75 84-164 7-84 (104)
38 cd02953 DsbDgamma DsbD gamma f 99.7 1.7E-16 3.8E-21 111.1 8.4 80 84-167 2-89 (104)
39 cd02950 TxlA TRX-like protein 99.7 2.6E-16 5.6E-21 116.9 9.4 81 84-168 11-93 (142)
40 TIGR01126 pdi_dom protein disu 99.7 4.7E-16 1E-20 107.5 10.0 77 83-164 3-81 (102)
41 cd02952 TRP14_like Human TRX-r 99.7 2.7E-16 5.9E-21 113.4 8.8 81 79-161 5-99 (119)
42 cd02988 Phd_like_VIAF Phosduci 99.7 3.9E-16 8.4E-21 121.5 9.4 92 74-172 81-172 (192)
43 cd02949 TRX_NTR TRX domain, no 99.7 9E-16 1.9E-20 106.4 10.2 81 85-169 4-84 (97)
44 cd02992 PDI_a_QSOX PDIa family 99.7 5.4E-16 1.2E-20 111.0 9.3 84 78-166 4-92 (114)
45 cd02998 PDI_a_ERp38 PDIa famil 99.7 7.6E-16 1.6E-20 107.0 9.7 80 78-162 3-85 (105)
46 cd02975 PfPDO_like_N Pyrococcu 99.7 6.9E-16 1.5E-20 110.3 8.8 70 95-166 20-89 (113)
47 cd02995 PDI_a_PDI_a'_C PDIa fa 99.6 1.3E-15 2.8E-20 105.8 9.6 80 78-163 3-84 (104)
48 cd02961 PDI_a_family Protein D 99.6 2E-15 4.4E-20 103.1 9.8 75 83-162 5-81 (101)
49 cd02959 ERp19 Endoplasmic reti 99.6 3.2E-15 6.9E-20 107.6 7.8 84 85-168 7-93 (117)
50 TIGR01295 PedC_BrcD bacterioci 99.6 7.8E-15 1.7E-19 106.3 9.5 82 82-169 12-107 (122)
51 TIGR00424 APS_reduc 5'-adenyly 99.6 5.9E-15 1.3E-19 127.9 10.2 86 76-163 352-439 (463)
52 cd02951 SoxW SoxW family; SoxW 99.6 1E-14 2.3E-19 105.4 8.6 75 84-162 4-94 (125)
53 cd02947 TRX_family TRX family; 99.6 2.2E-14 4.8E-19 96.1 9.4 78 85-168 2-79 (93)
54 KOG0190 Protein disulfide isom 99.6 7.5E-15 1.6E-19 127.1 8.1 83 76-164 26-111 (493)
55 PTZ00062 glutaredoxin; Provisi 99.6 1.3E-14 2.8E-19 113.8 8.5 79 81-172 4-82 (204)
56 PLN02309 5'-adenylylsulfate re 99.6 2.2E-14 4.7E-19 124.3 10.0 85 76-163 346-433 (457)
57 TIGR01130 ER_PDI_fam protein d 99.5 8.2E-14 1.8E-18 119.9 9.9 78 82-164 7-87 (462)
58 cd02982 PDI_b'_family Protein 99.5 1.3E-13 2.8E-18 95.9 8.4 70 96-166 11-84 (103)
59 PRK00293 dipZ thiol:disulfide 99.5 1.8E-13 3.8E-18 122.1 11.2 86 74-160 451-542 (571)
60 cd03007 PDI_a_ERp29_N PDIa fam 99.5 8.2E-14 1.8E-18 100.0 7.2 73 82-163 7-91 (116)
61 PTZ00102 disulphide isomerase; 99.5 1.9E-13 4E-18 118.8 9.8 82 77-164 34-118 (477)
62 TIGR00411 redox_disulf_1 small 99.5 3.7E-13 7.9E-18 89.8 7.7 58 100-158 2-59 (82)
63 PTZ00102 disulphide isomerase; 99.5 3.3E-13 7.1E-18 117.2 9.5 82 77-163 359-442 (477)
64 cd02955 SSP411 TRX domain, SSP 99.4 5.1E-13 1.1E-17 97.1 8.7 82 84-173 6-98 (124)
65 KOG0190 Protein disulfide isom 99.4 2.3E-13 5E-18 118.0 7.5 80 77-163 368-449 (493)
66 cd02973 TRX_GRX_like Thioredox 99.4 6.6E-13 1.4E-17 85.7 7.1 56 101-158 3-58 (67)
67 KOG4277 Uncharacterized conser 99.4 2.7E-13 5.9E-18 110.4 5.0 79 84-164 31-112 (468)
68 PF13905 Thioredoxin_8: Thiore 99.4 2.3E-12 5.1E-17 88.4 8.8 64 97-160 1-90 (95)
69 PHA02125 thioredoxin-like prot 99.4 1.4E-12 3E-17 86.5 6.3 50 101-157 2-51 (75)
70 cd03008 TryX_like_RdCVF Trypar 99.4 2.9E-12 6.4E-17 95.6 8.4 74 95-171 23-128 (146)
71 PF13899 Thioredoxin_7: Thiore 99.3 2.6E-12 5.7E-17 86.4 5.9 74 84-159 4-80 (82)
72 TIGR00412 redox_disulf_2 small 99.3 4.8E-12 1E-16 84.2 6.7 54 101-158 2-55 (76)
73 TIGR02187 GlrX_arch Glutaredox 99.3 7.6E-12 1.6E-16 98.8 8.9 65 97-163 133-197 (215)
74 TIGR01130 ER_PDI_fam protein d 99.3 3.3E-12 7.1E-17 110.0 7.4 81 77-164 348-431 (462)
75 cd03009 TryX_like_TryX_NRX Try 99.3 1.1E-11 2.3E-16 90.1 8.5 65 96-160 17-107 (131)
76 cd02964 TryX_like_family Trypa 99.3 1E-11 2.3E-16 90.5 8.4 66 95-160 15-107 (132)
77 KOG0912 Thiol-disulfide isomer 99.3 6.2E-12 1.4E-16 102.4 6.9 78 83-165 3-85 (375)
78 TIGR02187 GlrX_arch Glutaredox 99.3 1.2E-11 2.7E-16 97.6 8.4 68 96-165 18-90 (215)
79 KOG0191 Thioredoxin/protein di 99.3 1.3E-11 2.8E-16 105.2 7.4 67 95-162 45-111 (383)
80 TIGR02740 TraF-like TraF-like 99.2 4.4E-11 9.5E-16 97.8 8.2 65 95-161 164-238 (271)
81 PF13098 Thioredoxin_2: Thiore 99.2 1.3E-11 2.8E-16 87.0 3.8 66 95-160 3-90 (112)
82 cd03026 AhpF_NTD_C TRX-GRX-lik 99.2 1.2E-10 2.5E-15 79.9 8.3 61 96-158 11-71 (89)
83 KOG1731 FAD-dependent sulfhydr 99.2 1.1E-11 2.3E-16 108.2 3.5 86 81-169 44-136 (606)
84 TIGR02738 TrbB type-F conjugat 99.2 5.2E-11 1.1E-15 89.6 6.8 64 95-160 48-126 (153)
85 cd02960 AGR Anterior Gradient 99.2 8.7E-11 1.9E-15 85.8 7.5 75 83-159 9-86 (130)
86 cd02967 mauD Methylamine utili 99.2 5.4E-11 1.2E-15 84.0 5.8 60 96-156 20-82 (114)
87 cd02958 UAS UAS family; UAS is 99.2 2.5E-10 5.4E-15 81.3 8.6 77 85-161 5-85 (114)
88 cd03010 TlpA_like_DsbE TlpA-li 99.1 1.8E-10 3.8E-15 83.1 7.8 66 95-163 23-112 (127)
89 PRK14018 trifunctional thiored 99.1 1.9E-10 4.1E-15 101.3 8.5 69 95-164 54-152 (521)
90 cd02966 TlpA_like_family TlpA- 99.1 3.9E-10 8.6E-15 78.0 8.0 71 96-170 18-112 (116)
91 COG4232 Thiol:disulfide interc 99.1 4.1E-10 8.8E-15 99.0 8.5 80 78-160 457-542 (569)
92 PRK15412 thiol:disulfide inter 99.1 5.3E-10 1.2E-14 86.3 7.8 62 95-159 66-149 (185)
93 smart00594 UAS UAS domain. 99.1 1.4E-09 3.1E-14 78.6 9.1 77 84-160 14-94 (122)
94 cd03011 TlpA_like_ScsD_MtbDsbE 99.0 1.4E-09 3.1E-14 77.6 7.9 66 95-163 18-104 (123)
95 PF02114 Phosducin: Phosducin; 99.0 4.2E-10 9.1E-15 91.6 5.6 93 74-170 124-216 (265)
96 KOG0191 Thioredoxin/protein di 99.0 1.1E-09 2.4E-14 93.4 7.4 78 83-164 151-230 (383)
97 PRK03147 thiol-disulfide oxido 99.0 2.4E-09 5.1E-14 80.9 8.3 64 96-159 60-145 (173)
98 cd03012 TlpA_like_DipZ_like Tl 99.0 2.5E-09 5.5E-14 77.2 7.9 64 96-159 22-112 (126)
99 COG0526 TrxA Thiol-disulfide i 99.0 3E-09 6.5E-14 72.8 7.5 68 96-164 31-101 (127)
100 PLN02919 haloacid dehalogenase 99.0 2.3E-09 4.9E-14 101.8 8.6 71 96-167 419-518 (1057)
101 TIGR00385 dsbE periplasmic pro 98.9 2.6E-09 5.6E-14 81.5 7.4 66 95-163 61-149 (173)
102 KOG2501 Thioredoxin, nucleored 98.9 3E-09 6.5E-14 79.6 6.7 65 96-160 32-123 (157)
103 PF08534 Redoxin: Redoxin; In 98.9 7.1E-09 1.5E-13 76.3 8.3 64 96-159 27-121 (146)
104 PF06110 DUF953: Eukaryotic pr 98.9 1.1E-08 2.4E-13 73.7 7.9 80 81-161 3-98 (119)
105 KOG1672 ATP binding protein [P 98.9 5.7E-09 1.2E-13 80.3 6.6 88 73-166 64-151 (211)
106 PRK11509 hydrogenase-1 operon 98.8 3E-08 6.4E-13 72.7 9.0 81 84-169 25-108 (132)
107 TIGR02661 MauD methylamine deh 98.8 1.7E-08 3.6E-13 78.3 7.6 71 95-170 72-161 (189)
108 KOG3414 Component of the U4/U6 98.8 3.5E-08 7.6E-13 71.0 8.0 84 77-163 5-88 (142)
109 KOG0914 Thioredoxin-like prote 98.8 1.3E-08 2.9E-13 79.6 6.2 87 75-164 124-217 (265)
110 PRK13728 conjugal transfer pro 98.8 2.6E-08 5.6E-13 76.7 7.2 57 101-159 73-143 (181)
111 cd01659 TRX_superfamily Thiore 98.8 4.1E-08 8.8E-13 59.9 6.9 61 101-162 1-63 (69)
112 KOG3425 Uncharacterized conser 98.7 6.2E-08 1.3E-12 69.1 7.6 81 79-161 8-104 (128)
113 TIGR02196 GlrX_YruB Glutaredox 98.7 5.9E-08 1.3E-12 62.5 6.3 53 101-159 2-57 (74)
114 PF02966 DIM1: Mitosis protein 98.6 3.7E-07 8.1E-12 66.3 9.8 80 78-161 3-82 (133)
115 cd02969 PRX_like1 Peroxiredoxi 98.6 1.7E-07 3.8E-12 71.0 8.0 71 96-169 24-123 (171)
116 TIGR02180 GRX_euk Glutaredoxin 98.6 1.3E-07 2.8E-12 62.9 5.7 62 101-166 1-66 (84)
117 PTZ00056 glutathione peroxidas 98.6 1.4E-07 3.1E-12 73.7 6.0 43 96-138 38-81 (199)
118 TIGR02200 GlrX_actino Glutared 98.5 2.4E-07 5.2E-12 60.5 5.7 50 101-157 2-56 (77)
119 KOG0911 Glutaredoxin-related p 98.5 4.8E-08 1E-12 76.8 2.6 90 77-174 3-92 (227)
120 PF03190 Thioredox_DsbH: Prote 98.5 2.2E-07 4.8E-12 70.3 6.1 71 88-159 28-109 (163)
121 TIGR01626 ytfJ_HI0045 conserve 98.5 3.6E-07 7.9E-12 70.6 6.6 42 95-139 57-104 (184)
122 PF00578 AhpC-TSA: AhpC/TSA fa 98.5 6.9E-07 1.5E-11 63.5 7.4 64 96-159 24-115 (124)
123 PLN02412 probable glutathione 98.4 9.2E-07 2E-11 67.2 6.8 43 96-138 28-71 (167)
124 PF13728 TraF: F plasmid trans 98.4 2.5E-06 5.3E-11 67.6 9.5 65 96-163 119-194 (215)
125 cd00340 GSH_Peroxidase Glutath 98.4 7.2E-07 1.6E-11 66.5 5.4 42 96-138 21-63 (152)
126 PF14595 Thioredoxin_9: Thiore 98.4 8.5E-07 1.8E-11 64.8 5.4 74 96-171 40-117 (129)
127 TIGR02540 gpx7 putative glutat 98.3 8E-07 1.7E-11 66.3 5.3 43 95-137 20-63 (153)
128 PLN02399 phospholipid hydroper 98.3 1.1E-06 2.4E-11 70.5 5.3 43 96-138 98-141 (236)
129 PRK11200 grxA glutaredoxin 1; 98.3 2.8E-06 6E-11 57.2 6.3 66 100-168 2-72 (85)
130 cd02991 UAS_ETEA UAS family, E 98.3 9.1E-06 2E-10 58.3 8.9 74 85-161 5-85 (116)
131 cd03014 PRX_Atyp2cys Peroxired 98.3 3.2E-06 6.9E-11 62.0 6.6 43 96-139 25-68 (143)
132 cd03017 PRX_BCP Peroxiredoxin 98.2 5.4E-06 1.2E-10 60.2 7.3 44 96-139 22-67 (140)
133 cd02970 PRX_like2 Peroxiredoxi 98.2 7.9E-06 1.7E-10 59.8 8.3 45 97-141 24-69 (149)
134 KOG0913 Thiol-disulfide isomer 98.2 2E-07 4.4E-12 73.7 -0.6 80 77-164 26-106 (248)
135 COG2143 Thioredoxin-related pr 98.2 5.7E-06 1.2E-10 61.9 7.0 66 95-160 40-123 (182)
136 PRK00522 tpx lipid hydroperoxi 98.2 4.7E-06 1E-10 63.3 6.7 43 96-139 43-86 (167)
137 PF13192 Thioredoxin_3: Thiore 98.2 1.1E-05 2.3E-10 53.4 6.9 53 102-158 3-55 (76)
138 PF11009 DUF2847: Protein of u 98.1 2.3E-05 5E-10 55.2 8.6 86 77-164 1-90 (105)
139 KOG3171 Conserved phosducin-li 98.1 8.4E-06 1.8E-10 64.0 6.8 95 71-169 134-228 (273)
140 cd03419 GRX_GRXh_1_2_like Glut 98.1 7.1E-06 1.5E-10 54.3 5.1 61 101-167 2-66 (82)
141 TIGR02739 TraF type-F conjugat 98.1 2.5E-05 5.5E-10 63.4 9.1 64 96-162 149-223 (256)
142 cd02976 NrdH NrdH-redoxin (Nrd 98.1 1.4E-05 3E-10 51.1 6.0 52 101-158 2-56 (73)
143 cd02968 SCO SCO (an acronym fo 98.1 1.7E-05 3.6E-10 57.8 7.1 44 96-139 21-69 (142)
144 PTZ00256 glutathione peroxidas 98.0 1.2E-05 2.5E-10 61.9 6.2 43 96-138 39-83 (183)
145 cd02971 PRX_family Peroxiredox 98.0 2.8E-05 6.1E-10 56.3 7.9 44 96-139 21-66 (140)
146 TIGR03137 AhpC peroxiredoxin. 98.0 2E-05 4.2E-10 60.9 7.2 44 96-139 30-75 (187)
147 cd03015 PRX_Typ2cys Peroxiredo 98.0 2.1E-05 4.5E-10 59.8 7.1 44 96-139 28-73 (173)
148 TIGR02183 GRXA Glutaredoxin, G 98.0 2.2E-05 4.8E-10 53.1 5.6 56 101-157 2-62 (86)
149 PF00462 Glutaredoxin: Glutare 97.9 6.4E-05 1.4E-09 47.1 6.7 52 101-158 1-55 (60)
150 PRK13703 conjugal pilus assemb 97.9 9.1E-05 2E-09 59.8 8.8 64 96-162 142-216 (248)
151 PRK09437 bcp thioredoxin-depen 97.9 6.4E-05 1.4E-09 55.8 7.2 44 96-139 29-74 (154)
152 cd02066 GRX_family Glutaredoxi 97.9 5.3E-05 1.1E-09 48.0 5.7 59 101-167 2-63 (72)
153 TIGR03143 AhpF_homolog putativ 97.8 0.0001 2.2E-09 65.9 8.6 61 96-158 474-535 (555)
154 TIGR02190 GlrX-dom Glutaredoxi 97.8 7.9E-05 1.7E-09 49.5 5.9 56 96-157 5-62 (79)
155 PRK10606 btuE putative glutath 97.8 4.3E-05 9.4E-10 59.1 5.1 42 96-138 24-66 (183)
156 cd03018 PRX_AhpE_like Peroxire 97.8 7.2E-05 1.6E-09 54.9 5.8 42 98-139 29-72 (149)
157 PRK15317 alkyl hydroperoxide r 97.7 0.00015 3.3E-09 64.2 8.5 59 98-158 117-175 (517)
158 PRK10382 alkyl hydroperoxide r 97.7 0.00018 3.9E-09 55.8 7.5 44 96-139 30-75 (187)
159 PHA03050 glutaredoxin; Provisi 97.7 0.00015 3.2E-09 51.4 6.3 63 101-168 15-83 (108)
160 cd02972 DsbA_family DsbA famil 97.7 0.00019 4E-09 47.9 6.5 60 101-160 1-91 (98)
161 TIGR02194 GlrX_NrdH Glutaredox 97.6 0.00021 4.5E-09 46.5 5.7 50 102-158 2-54 (72)
162 PRK15000 peroxidase; Provision 97.6 0.00027 5.8E-09 55.3 7.2 44 96-139 33-78 (200)
163 PF13848 Thioredoxin_6: Thiore 97.6 0.00059 1.3E-08 51.5 8.8 78 78-161 80-160 (184)
164 TIGR00365 monothiol glutaredox 97.6 0.00057 1.2E-08 47.3 7.6 71 84-167 3-80 (97)
165 TIGR02181 GRX_bact Glutaredoxi 97.5 0.00023 5E-09 46.9 5.2 60 101-168 1-63 (79)
166 TIGR02189 GlrX-like_plant Glut 97.5 0.00022 4.8E-09 49.6 5.2 60 101-168 10-75 (99)
167 cd03028 GRX_PICOT_like Glutare 97.5 0.00038 8.2E-09 47.4 6.3 65 96-168 6-77 (90)
168 PRK13190 putative peroxiredoxi 97.5 0.00039 8.5E-09 54.4 7.1 44 96-139 26-71 (202)
169 cd03418 GRX_GRXb_1_3_like Glut 97.4 0.0006 1.3E-08 44.2 6.2 59 101-167 2-64 (75)
170 cd03020 DsbA_DsbC_DsbG DsbA fa 97.4 0.00023 5E-09 55.2 4.6 27 95-121 75-101 (197)
171 PRK10329 glutaredoxin-like pro 97.4 0.00082 1.8E-08 45.0 6.7 52 101-158 3-56 (81)
172 TIGR03140 AhpF alkyl hydropero 97.4 0.00077 1.7E-08 59.7 8.4 60 97-158 117-176 (515)
173 cd03027 GRX_DEP Glutaredoxin ( 97.4 0.00082 1.8E-08 43.6 6.5 58 101-166 3-63 (73)
174 KOG1752 Glutaredoxin and relat 97.4 0.001 2.2E-08 46.9 7.2 71 84-166 5-79 (104)
175 PRK13599 putative peroxiredoxi 97.4 0.00098 2.1E-08 52.8 8.0 45 96-140 27-73 (215)
176 PRK10954 periplasmic protein d 97.3 0.00077 1.7E-08 52.8 6.7 41 97-137 37-80 (207)
177 cd02983 P5_C P5 family, C-term 97.3 0.0046 9.9E-08 45.1 10.0 83 76-163 3-92 (130)
178 PRK10877 protein disulfide iso 97.2 0.00059 1.3E-08 54.6 5.0 30 95-124 105-134 (232)
179 cd03029 GRX_hybridPRX5 Glutare 97.2 0.0014 2.9E-08 42.4 5.8 58 101-166 3-62 (72)
180 cd03023 DsbA_Com1_like DsbA fa 97.2 0.00085 1.8E-08 48.9 5.4 42 95-137 3-44 (154)
181 cd02981 PDI_b_family Protein D 97.2 0.0038 8.2E-08 42.4 8.3 73 78-162 2-74 (97)
182 PF07449 HyaE: Hydrogenase-1 e 97.2 0.00099 2.1E-08 47.1 5.2 80 83-168 16-98 (107)
183 COG0695 GrxC Glutaredoxin and 97.2 0.0015 3.2E-08 43.7 5.8 52 101-158 3-59 (80)
184 PRK13189 peroxiredoxin; Provis 97.1 0.0026 5.7E-08 50.5 8.1 45 96-140 34-80 (222)
185 KOG3170 Conserved phosducin-li 97.1 0.0019 4.1E-08 50.4 6.8 89 75-170 91-179 (240)
186 PF05768 DUF836: Glutaredoxin- 97.1 0.0016 3.4E-08 43.5 5.3 55 101-159 2-56 (81)
187 PRK10638 glutaredoxin 3; Provi 96.9 0.0039 8.5E-08 41.5 6.2 51 101-157 4-57 (83)
188 PRK10824 glutaredoxin-4; Provi 96.9 0.0051 1.1E-07 44.1 6.8 70 84-166 6-82 (115)
189 PTZ00137 2-Cys peroxiredoxin; 96.8 0.0023 4.9E-08 52.2 5.4 44 96-139 97-142 (261)
190 PRK13191 putative peroxiredoxi 96.8 0.0024 5.3E-08 50.5 5.0 45 96-140 32-78 (215)
191 cd03016 PRX_1cys Peroxiredoxin 96.7 0.0026 5.6E-08 49.7 4.6 41 99-139 28-69 (203)
192 cd03072 PDI_b'_ERp44 PDIb' fam 96.6 0.018 3.9E-07 40.8 7.9 73 84-163 7-84 (111)
193 KOG2603 Oligosaccharyltransfer 96.5 0.0068 1.5E-07 50.2 6.1 79 78-159 43-133 (331)
194 PRK11657 dsbG disulfide isomer 96.5 0.013 2.8E-07 47.5 7.3 39 95-135 115-153 (251)
195 PF13462 Thioredoxin_4: Thiore 96.4 0.0091 2E-07 44.0 5.9 44 95-138 10-55 (162)
196 PTZ00253 tryparedoxin peroxida 96.4 0.0065 1.4E-07 47.3 5.2 44 96-139 35-80 (199)
197 TIGR03143 AhpF_homolog putativ 96.4 0.021 4.5E-07 51.2 8.9 72 85-160 356-427 (555)
198 cd03019 DsbA_DsbA DsbA family, 96.4 0.0066 1.4E-07 45.5 4.8 41 96-136 14-54 (178)
199 PTZ00062 glutaredoxin; Provisi 96.2 0.024 5.3E-07 44.6 7.4 64 96-167 111-181 (204)
200 PRK12759 bifunctional gluaredo 96.1 0.016 3.4E-07 50.2 6.3 60 101-168 4-74 (410)
201 cd03073 PDI_b'_ERp72_ERp57 PDI 96.0 0.041 8.8E-07 39.0 6.9 51 110-161 31-86 (111)
202 PF01216 Calsequestrin: Calseq 95.9 0.05 1.1E-06 45.9 7.9 80 77-163 36-123 (383)
203 cd03067 PDI_b_PDIR_N PDIb fami 95.6 0.08 1.7E-06 37.1 6.8 81 78-163 4-90 (112)
204 COG1331 Highly conserved prote 95.1 0.056 1.2E-06 49.2 6.3 71 83-158 33-114 (667)
205 PF13743 Thioredoxin_5: Thiore 95.0 0.12 2.5E-06 39.5 7.0 33 103-135 2-34 (176)
206 cd02978 KaiB_like KaiB-like fa 94.7 0.15 3.2E-06 33.5 5.7 57 100-157 3-60 (72)
207 cd03066 PDI_b_Calsequestrin_mi 94.5 0.44 9.6E-06 32.8 8.4 74 77-162 2-76 (102)
208 cd03069 PDI_b_ERp57 PDIb famil 94.5 0.3 6.6E-06 33.8 7.6 70 77-159 2-71 (104)
209 PF07912 ERp29_N: ERp29, N-ter 94.4 0.7 1.5E-05 33.5 9.3 70 85-160 13-91 (126)
210 cd03031 GRX_GRX_like Glutaredo 94.0 0.21 4.5E-06 37.3 6.1 52 101-158 2-66 (147)
211 cd03060 GST_N_Omega_like GST_N 93.5 0.19 4E-06 32.0 4.5 53 102-158 2-54 (71)
212 TIGR02654 circ_KaiB circadian 93.4 0.29 6.4E-06 33.2 5.5 59 98-157 3-62 (87)
213 COG1225 Bcp Peroxiredoxin [Pos 93.4 0.26 5.5E-06 37.2 5.7 45 95-139 28-74 (157)
214 cd03013 PRX5_like Peroxiredoxi 93.2 0.34 7.4E-06 36.1 6.2 43 97-139 29-75 (155)
215 PHA03075 glutaredoxin-like pro 93.2 0.12 2.6E-06 36.9 3.5 36 98-137 2-37 (123)
216 PRK09301 circadian clock prote 93.1 0.33 7.2E-06 34.0 5.5 61 96-157 4-65 (103)
217 PF09673 TrbC_Ftype: Type-F co 91.6 0.73 1.6E-05 32.7 5.9 71 83-161 10-80 (113)
218 cd03068 PDI_b_ERp72 PDIb famil 90.4 3.5 7.7E-05 28.7 8.4 71 77-159 2-73 (107)
219 cd02977 ArsC_family Arsenate R 90.2 0.35 7.7E-06 33.4 3.2 32 102-139 2-33 (105)
220 KOG2640 Thioredoxin [Function 89.8 0.076 1.7E-06 44.1 -0.6 65 95-161 74-139 (319)
221 cd03059 GST_N_SspA GST_N famil 89.6 0.65 1.4E-05 29.3 3.8 52 102-157 2-53 (73)
222 PF00837 T4_deiodinase: Iodoth 89.4 0.67 1.5E-05 37.3 4.5 43 95-137 100-142 (237)
223 PF06053 DUF929: Domain of unk 89.1 1.4 3.1E-05 35.7 6.3 60 95-162 56-115 (249)
224 cd03035 ArsC_Yffb Arsenate Red 88.2 0.66 1.4E-05 32.4 3.4 33 102-140 2-34 (105)
225 PF07689 KaiB: KaiB domain; I 88.2 0.23 5E-06 33.4 1.0 53 104-157 3-56 (82)
226 TIGR02742 TrbC_Ftype type-F co 88.1 1.7 3.7E-05 31.7 5.6 72 83-163 11-82 (130)
227 cd03036 ArsC_like Arsenate Red 87.3 0.78 1.7E-05 32.2 3.3 34 102-141 2-35 (111)
228 cd00570 GST_N_family Glutathio 87.2 1.1 2.3E-05 27.1 3.6 52 103-158 3-55 (71)
229 PF13848 Thioredoxin_6: Thiore 86.5 2.8 6E-05 31.2 6.2 43 115-162 8-50 (184)
230 PRK01655 spxA transcriptional 86.5 1.1 2.3E-05 32.6 3.8 35 101-141 2-36 (131)
231 cd03051 GST_N_GTT2_like GST_N 86.1 1.2 2.6E-05 27.9 3.5 53 102-158 2-57 (74)
232 cd02990 UAS_FAF1 UAS family, F 85.3 12 0.00026 27.5 8.8 78 85-162 5-106 (136)
233 TIGR01617 arsC_related transcr 84.6 1.4 3.1E-05 31.1 3.6 34 102-141 2-35 (117)
234 PRK12559 transcriptional regul 83.8 1.9 4.1E-05 31.4 4.0 34 101-140 2-35 (131)
235 cd03040 GST_N_mPGES2 GST_N fam 83.5 6.6 0.00014 24.9 6.2 51 101-158 2-53 (77)
236 COG4545 Glutaredoxin-related p 82.0 3.1 6.7E-05 27.6 4.0 51 102-158 5-70 (85)
237 cd03032 ArsC_Spx Arsenate Redu 81.7 2.8 6E-05 29.5 4.1 34 101-140 2-35 (115)
238 cd03055 GST_N_Omega GST_N fami 81.2 4.1 8.9E-05 27.1 4.7 54 101-158 19-72 (89)
239 cd03045 GST_N_Delta_Epsilon GS 80.8 3.3 7.1E-05 26.0 3.9 52 102-157 2-56 (74)
240 cd03041 GST_N_2GST_N GST_N fam 80.7 8 0.00017 24.8 5.8 52 101-158 2-56 (77)
241 cd03037 GST_N_GRX2 GST_N famil 79.8 2.6 5.6E-05 26.5 3.1 50 103-157 3-52 (71)
242 PRK13344 spxA transcriptional 79.0 3.4 7.4E-05 30.1 3.9 34 101-140 2-35 (132)
243 COG3019 Predicted metal-bindin 75.8 7.6 0.00016 28.8 4.9 46 99-151 26-71 (149)
244 PF02630 SCO1-SenC: SCO1/SenC; 74.8 10 0.00022 28.7 5.6 44 96-139 51-98 (174)
245 COG1651 DsbG Protein-disulfide 74.8 5.1 0.00011 31.6 4.2 39 97-136 84-122 (244)
246 PF13417 GST_N_3: Glutathione 74.4 7.7 0.00017 24.7 4.3 50 104-157 2-51 (75)
247 cd03025 DsbA_FrnE_like DsbA fa 71.6 6.8 0.00015 29.4 4.1 29 101-129 3-31 (193)
248 COG1999 Uncharacterized protei 71.1 18 0.00039 28.3 6.4 56 95-150 65-127 (207)
249 PRK15317 alkyl hydroperoxide r 70.9 22 0.00048 31.6 7.7 62 84-161 8-69 (517)
250 PRK13730 conjugal transfer pil 70.9 18 0.0004 28.5 6.2 70 83-161 102-171 (212)
251 cd02974 AhpF_NTD_N Alkyl hydro 67.8 36 0.00078 23.2 7.7 62 84-162 8-70 (94)
252 PF01323 DSBA: DSBA-like thior 67.7 9.8 0.00021 28.4 4.2 34 100-134 1-34 (193)
253 TIGR03140 AhpF alkyl hydropero 67.6 30 0.00065 30.7 7.8 64 84-162 8-71 (515)
254 PF04592 SelP_N: Selenoprotein 61.6 13 0.00028 29.9 3.9 46 95-140 24-73 (238)
255 cd03033 ArsC_15kD Arsenate Red 60.9 13 0.00029 26.2 3.5 34 101-140 2-35 (113)
256 PF11287 DUF3088: Protein of u 60.9 14 0.00031 26.2 3.6 51 108-159 23-75 (112)
257 cd03056 GST_N_4 GST_N family, 56.3 12 0.00027 23.0 2.5 53 102-158 2-57 (73)
258 cd03025 DsbA_FrnE_like DsbA fa 51.6 16 0.00034 27.4 2.8 25 144-169 161-185 (193)
259 PF09822 ABC_transp_aux: ABC-t 49.7 1E+02 0.0022 24.7 7.5 61 95-155 22-91 (271)
260 TIGR00014 arsC arsenate reduct 49.7 24 0.00051 24.8 3.3 33 102-140 2-34 (114)
261 cd03034 ArsC_ArsC Arsenate Red 49.5 24 0.00052 24.6 3.3 33 102-140 2-34 (112)
262 cd03052 GST_N_GDAP1 GST_N fami 49.3 35 0.00077 21.6 3.9 52 102-157 2-56 (73)
263 PF00255 GSHPx: Glutathione pe 46.5 79 0.0017 22.1 5.5 44 95-139 19-63 (108)
264 PRK09481 sspA stringent starva 45.3 40 0.00087 25.8 4.3 58 96-157 6-63 (211)
265 cd03049 GST_N_3 GST_N family, 45.3 46 0.001 20.6 3.9 54 103-158 3-56 (73)
266 cd03061 GST_N_CLIC GST_N famil 44.4 38 0.00081 23.0 3.5 48 106-157 19-66 (91)
267 cd03053 GST_N_Phi GST_N family 43.3 31 0.00066 21.5 2.8 53 101-157 2-57 (76)
268 COG3531 Predicted protein-disu 41.9 19 0.00042 28.3 1.9 23 143-165 165-187 (212)
269 cd03058 GST_N_Tau GST_N family 41.3 60 0.0013 20.1 4.0 51 103-157 3-54 (74)
270 PF04134 DUF393: Protein of un 41.3 38 0.00081 23.2 3.3 45 104-151 2-46 (114)
271 COG0278 Glutaredoxin-related p 38.6 1.4E+02 0.003 21.0 6.0 70 84-164 6-81 (105)
272 PF06491 Disulph_isomer: Disul 37.8 1.6E+02 0.0035 21.6 7.8 83 76-164 17-107 (136)
273 KOG2507 Ubiquitin regulatory p 37.4 1.6E+02 0.0034 26.1 6.9 74 85-160 7-85 (506)
274 COG3634 AhpF Alkyl hydroperoxi 36.7 56 0.0012 28.4 4.1 67 96-166 115-181 (520)
275 PF03960 ArsC: ArsC family; I 36.3 58 0.0013 22.4 3.6 32 104-141 1-32 (110)
276 KOG0911 Glutaredoxin-related p 33.4 2.4E+02 0.0053 22.6 6.9 73 86-166 128-206 (227)
277 PRK10853 putative reductase; P 33.2 57 0.0012 23.1 3.2 34 101-140 2-35 (118)
278 cd03376 TPP_PFOR_porB_like Thi 32.8 2.5E+02 0.0054 22.2 7.2 57 79-137 172-232 (235)
279 COG3439 Uncharacterized conser 32.4 92 0.002 22.9 4.2 54 116-173 22-78 (137)
280 PF13926 DUF4211: Domain of un 31.8 80 0.0017 23.3 3.9 47 116-165 93-140 (153)
281 TIGR01616 nitro_assoc nitrogen 31.8 78 0.0017 22.7 3.7 33 101-139 3-35 (126)
282 PF05679 CHGN: Chondroitin N-a 31.3 2.3E+02 0.005 25.3 7.3 83 85-167 269-355 (499)
283 PF07700 HNOB: Heme NO binding 30.6 1.1E+02 0.0023 22.9 4.5 43 96-138 126-169 (171)
284 KOG2244 Highly conserved prote 30.4 35 0.00076 31.1 2.0 56 83-142 102-160 (786)
285 COG1393 ArsC Arsenate reductas 29.9 88 0.0019 22.2 3.7 22 101-122 3-24 (117)
286 KOG0324 Uncharacterized conser 28.2 50 0.0011 26.2 2.3 55 102-157 78-133 (214)
287 PRK10026 arsenate reductase; P 27.9 97 0.0021 22.8 3.7 33 101-139 4-36 (141)
288 COG2077 Tpx Peroxiredoxin [Pos 27.0 1.6E+02 0.0036 22.2 4.7 74 95-170 43-122 (158)
289 PF14421 LmjF365940-deam: A di 24.7 78 0.0017 24.6 2.7 29 108-140 156-184 (193)
290 PRK11865 pyruvate ferredoxin o 23.1 4.4E+02 0.0096 21.9 7.9 62 75-138 179-244 (299)
291 cd03070 PDI_b_ERp44 PDIb famil 23.1 2.5E+02 0.0054 19.0 5.1 50 78-135 2-51 (91)
292 cd06403 PB1_Par6 The PB1 domai 22.3 77 0.0017 21.1 2.0 24 74-101 50-73 (80)
293 cd03074 PDI_b'_Calsequestrin_C 21.7 3.1E+02 0.0067 19.6 7.0 73 96-169 19-98 (120)
294 COG5429 Uncharacterized secret 21.2 2.9E+02 0.0062 22.5 5.4 63 98-162 42-121 (261)
295 PF06764 DUF1223: Protein of u 20.1 2.6E+02 0.0057 21.8 5.0 37 101-139 2-38 (202)
No 1
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.87 E-value=9.3e-22 Score=140.64 Aligned_cols=86 Identities=22% Similarity=0.310 Sum_probs=77.2
Q ss_pred hhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEEEEeec
Q 030523 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQVIFFF 162 (175)
Q Consensus 83 ~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~f~~~ 162 (175)
.++|++.+.. +.++++||+|||+||++|+.|.|.++++++++.+.+.|++||+|++++ ++++|+|.++||+++|+.+
T Consensus 2 ~~~~~~~i~~--~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~-la~~~~V~~iPTf~~fk~G 78 (114)
T cd02954 2 GWAVDQAILS--EEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPD-FNKMYELYDPPTVMFFFRN 78 (114)
T ss_pred HHHHHHHHhc--cCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHH-HHHHcCCCCCCEEEEEECC
Confidence 4678888853 368899999999999999999999999999996678999999999997 9999999999999999999
Q ss_pred ccceecccc
Q 030523 163 PFYFTFLFA 171 (175)
Q Consensus 163 ~~~~~~~~~ 171 (175)
..-++...+
T Consensus 79 ~~v~~~~G~ 87 (114)
T cd02954 79 KHMKIDLGT 87 (114)
T ss_pred EEEEEEcCC
Confidence 888877653
No 2
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.1e-21 Score=145.00 Aligned_cols=87 Identities=30% Similarity=0.516 Sum_probs=79.0
Q ss_pred eEEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeE
Q 030523 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156 (175)
Q Consensus 77 ~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~ 156 (175)
...+.+.++|++.+. +++.||+|+|||+||+||+.+.|.++++..++.+.+++++||.|++++ ++.+|+|.++||+
T Consensus 44 ~~~~~s~~~~~~~Vi---~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~e-la~~Y~I~avPtv 119 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVI---NSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPE-LAEDYEISAVPTV 119 (150)
T ss_pred cccccCHHHHHHHHH---ccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccc-hHhhcceeeeeEE
Confidence 445567789999887 789999999999999999999999999999999999999999999997 9999999999999
Q ss_pred EEEeeccccee
Q 030523 157 QVIFFFPFYFT 167 (175)
Q Consensus 157 ~~f~~~~~~~~ 167 (175)
++|++|.---+
T Consensus 120 lvfknGe~~d~ 130 (150)
T KOG0910|consen 120 LVFKNGEKVDR 130 (150)
T ss_pred EEEECCEEeee
Confidence 99999864433
No 3
>PHA02278 thioredoxin-like protein
Probab=99.85 E-value=6.7e-21 Score=134.35 Aligned_cols=86 Identities=15% Similarity=0.134 Sum_probs=75.6
Q ss_pred CChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCCh---HHHHHHcCCCccCeEE
Q 030523 81 NDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS---KDLVKRGNISKMPTIQ 157 (175)
Q Consensus 81 ~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~---~~l~~~~~I~~~Pt~~ 157 (175)
++.++|++.+ .++++++|+|||+||++|+.|.|.++++++++..++.|+++|+|.++ ..++++|+|.++||++
T Consensus 2 ~~~~~~~~~i----~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i 77 (103)
T PHA02278 2 NSLVDLNTAI----RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLI 77 (103)
T ss_pred CCHHHHHHHH----hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEE
Confidence 4678999999 68999999999999999999999999999886566889999999862 3499999999999999
Q ss_pred EEeecccceeccc
Q 030523 158 VIFFFPFYFTFLF 170 (175)
Q Consensus 158 ~f~~~~~~~~~~~ 170 (175)
+|+.+..-++...
T Consensus 78 ~fk~G~~v~~~~G 90 (103)
T PHA02278 78 GYKDGQLVKKYED 90 (103)
T ss_pred EEECCEEEEEEeC
Confidence 9999988777643
No 4
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=6.6e-21 Score=134.91 Aligned_cols=87 Identities=29% Similarity=0.445 Sum_probs=74.1
Q ss_pred hhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEEEEeec
Q 030523 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQVIFFF 162 (175)
Q Consensus 83 ~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~f~~~ 162 (175)
.++++.........+++++|+|||+|||||+.+.|.+++++.+| +++.|++||+|++.+ ++++++|.++|||++|+.+
T Consensus 7 ~~~~~~~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y-~~v~Flkvdvde~~~-~~~~~~V~~~PTf~f~k~g 84 (106)
T KOG0907|consen 7 VSDLDLVLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKY-PDVVFLKVDVDELEE-VAKEFNVKAMPTFVFYKGG 84 (106)
T ss_pred hhhHHHHHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHC-CCCEEEEEecccCHh-HHHhcCceEeeEEEEEECC
Confidence 34455555444456799999999999999999999999999999 559999999999665 9999999999999999999
Q ss_pred ccceecccc
Q 030523 163 PFYFTFLFA 171 (175)
Q Consensus 163 ~~~~~~~~~ 171 (175)
.--+.+.-+
T Consensus 85 ~~~~~~vGa 93 (106)
T KOG0907|consen 85 EEVDEVVGA 93 (106)
T ss_pred EEEEEEecC
Confidence 877776544
No 5
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.83 E-value=6.3e-20 Score=131.34 Aligned_cols=88 Identities=20% Similarity=0.266 Sum_probs=81.2
Q ss_pred eeEEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCe
Q 030523 76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPT 155 (175)
Q Consensus 76 ~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt 155 (175)
.+.+|++.++|++.+ .++++++|+||++||++|+.+.|.++++++++ ++++|++||++++++ ++++|+|.++||
T Consensus 5 ~v~~i~~~~~~~~~i----~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~-~~i~f~~Vd~~~~~~-l~~~~~v~~vPt 78 (113)
T cd02989 5 KYREVSDEKEFFEIV----KSSERVVCHFYHPEFFRCKIMDKHLEILAKKH-LETKFIKVNAEKAPF-LVEKLNIKVLPT 78 (113)
T ss_pred CeEEeCCHHHHHHHH----hCCCcEEEEEECCCCccHHHHHHHHHHHHHHc-CCCEEEEEEcccCHH-HHHHCCCccCCE
Confidence 467889989999999 67899999999999999999999999999998 679999999999997 999999999999
Q ss_pred EEEEeecccceecc
Q 030523 156 IQVIFFFPFYFTFL 169 (175)
Q Consensus 156 ~~~f~~~~~~~~~~ 169 (175)
+++|+.+..-+++.
T Consensus 79 ~l~fk~G~~v~~~~ 92 (113)
T cd02989 79 VILFKNGKTVDRIV 92 (113)
T ss_pred EEEEECCEEEEEEE
Confidence 99999998877654
No 6
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.82 E-value=8.3e-20 Score=130.03 Aligned_cols=79 Identities=20% Similarity=0.285 Sum_probs=71.4
Q ss_pred hhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEEEEeec
Q 030523 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQVIFFF 162 (175)
Q Consensus 83 ~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~f~~~ 162 (175)
.+++++.+..+ ++++|||+|+|+||++|+.|.|.++++++++++.+.|++||+|+.++ ++++|+|.+.||+++|+.+
T Consensus 2 ~~~~d~~i~~~--~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~d-va~~y~I~amPtfvffkng 78 (114)
T cd02986 2 KKEVDQAIKST--AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPV-YTQYFDISYIPSTIFFFNG 78 (114)
T ss_pred HHHHHHHHHhc--CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHH-HHHhcCceeCcEEEEEECC
Confidence 46788888653 79999999999999999999999999999994349999999999997 9999999999999999987
Q ss_pred cc
Q 030523 163 PF 164 (175)
Q Consensus 163 ~~ 164 (175)
.-
T Consensus 79 kh 80 (114)
T cd02986 79 QH 80 (114)
T ss_pred cE
Confidence 64
No 7
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.82 E-value=1.3e-19 Score=127.43 Aligned_cols=85 Identities=14% Similarity=0.209 Sum_probs=74.5
Q ss_pred ChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCCh--HHHHHHcCCCccCeEEEE
Q 030523 82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS--KDLVKRGNISKMPTIQVI 159 (175)
Q Consensus 82 s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~--~~l~~~~~I~~~Pt~~~f 159 (175)
+.++|++.+.+ ..++++||+|||+||++|+.+.|.++++++++ +++.|++||+|++. ..++++|+|.++||+++|
T Consensus 2 ~~~~~~~~i~~--~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~ 78 (103)
T cd02985 2 SVEELDEALKK--AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFY 78 (103)
T ss_pred CHHHHHHHHHH--cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEE
Confidence 56789999964 35899999999999999999999999999999 78999999999874 248999999999999999
Q ss_pred eecccceecc
Q 030523 160 FFFPFYFTFL 169 (175)
Q Consensus 160 ~~~~~~~~~~ 169 (175)
..+..-+++.
T Consensus 79 ~~G~~v~~~~ 88 (103)
T cd02985 79 KDGEKIHEEE 88 (103)
T ss_pred eCCeEEEEEe
Confidence 9887665554
No 8
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.82 E-value=1.4e-19 Score=126.31 Aligned_cols=84 Identities=14% Similarity=0.260 Sum_probs=74.5
Q ss_pred eEEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeE
Q 030523 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156 (175)
Q Consensus 77 ~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~ 156 (175)
+.+++ .++|++.+ ..+++++|+||++||++|+.+.|.++++++++++.+.|++||+++++. ++++++|.++||+
T Consensus 3 ~~~l~-~~~f~~~v----~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~Pt~ 76 (101)
T cd03003 3 IVTLD-RGDFDAAV----NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRM-LCRSQGVNSYPSL 76 (101)
T ss_pred eEEcC-HhhHHHHh----cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHH-HHHHcCCCccCEE
Confidence 34453 56999998 567999999999999999999999999999998789999999999987 9999999999999
Q ss_pred EEEeecccce
Q 030523 157 QVIFFFPFYF 166 (175)
Q Consensus 157 ~~f~~~~~~~ 166 (175)
++|..+..-.
T Consensus 77 ~~~~~g~~~~ 86 (101)
T cd03003 77 YVFPSGMNPE 86 (101)
T ss_pred EEEcCCCCcc
Confidence 9998776433
No 9
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.81 E-value=2.2e-19 Score=128.55 Aligned_cols=85 Identities=13% Similarity=0.144 Sum_probs=72.0
Q ss_pred eEEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHH-HHcCCCccCe
Q 030523 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLV-KRGNISKMPT 155 (175)
Q Consensus 77 ~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~-~~~~I~~~Pt 155 (175)
+.++++ ++|++++.-. +++++++|+|||+||++|+.+.|.++++++++++.+.|++||++++.+ ++ ++|+|.++||
T Consensus 11 v~~l~~-~~f~~~~~v~-~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~-l~~~~~~I~~~PT 87 (113)
T cd03006 11 VLDFYK-GQLDYAEELR-TDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQG-KCRKQKHFFYFPV 87 (113)
T ss_pred eEEech-hhhHHHHhcc-cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChH-HHHHhcCCcccCE
Confidence 445443 4788763211 689999999999999999999999999999997789999999999987 78 5899999999
Q ss_pred EEEEeeccc
Q 030523 156 IQVIFFFPF 164 (175)
Q Consensus 156 ~~~f~~~~~ 164 (175)
+++|+.+..
T Consensus 88 l~lf~~g~~ 96 (113)
T cd03006 88 IHLYYRSRG 96 (113)
T ss_pred EEEEECCcc
Confidence 999987653
No 10
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.81 E-value=2.9e-19 Score=125.39 Aligned_cols=86 Identities=17% Similarity=0.239 Sum_probs=75.7
Q ss_pred EcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCC-CeEEEEEEccCChHHHHHHcCCCccCeEE
Q 030523 79 PINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLVKRGNISKMPTIQ 157 (175)
Q Consensus 79 ~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~ 157 (175)
.|++.++|++++ +++++++|+|||+||++|+.+.|.++++++++++ .+.|+.+|+| +++ ++++|+|+++||++
T Consensus 3 ~i~~~~~~~~~i----~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~-~~~~~~v~~~Pt~~ 76 (102)
T cd02948 3 EINNQEEWEELL----SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TID-TLKRYRGKCEPTFL 76 (102)
T ss_pred EccCHHHHHHHH----ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHH-HHHHcCCCcCcEEE
Confidence 568899999998 6889999999999999999999999999999864 4899999999 665 89999999999999
Q ss_pred EEeecccceeccc
Q 030523 158 VIFFFPFYFTFLF 170 (175)
Q Consensus 158 ~f~~~~~~~~~~~ 170 (175)
+|..+..-++...
T Consensus 77 ~~~~g~~~~~~~G 89 (102)
T cd02948 77 FYKNGELVAVIRG 89 (102)
T ss_pred EEECCEEEEEEec
Confidence 9998876655443
No 11
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.80 E-value=2.3e-19 Score=132.90 Aligned_cols=85 Identities=18% Similarity=0.247 Sum_probs=75.5
Q ss_pred eeEEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCe
Q 030523 76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPT 155 (175)
Q Consensus 76 ~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt 155 (175)
.+.++.+.++|++.+.. +.++++||+|||+||+||+.|.|.++++++++++.+.|++||+|++++ ++++|+|.+.||
T Consensus 4 ~l~~l~s~~e~d~~I~~--~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~d-la~~y~I~~~~t 80 (142)
T PLN00410 4 LLPHLHSGWAVDQAILA--EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPD-FNTMYELYDPCT 80 (142)
T ss_pred hHhhhCCHHHHHHHHHh--cCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHH-HHHHcCccCCCc
Confidence 35677899999999974 368899999999999999999999999999996679999999999997 999999998877
Q ss_pred EE-EEeecc
Q 030523 156 IQ-VIFFFP 163 (175)
Q Consensus 156 ~~-~f~~~~ 163 (175)
++ +|+.+.
T Consensus 81 ~~~ffk~g~ 89 (142)
T PLN00410 81 VMFFFRNKH 89 (142)
T ss_pred EEEEEECCe
Confidence 77 777765
No 12
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.80 E-value=2.7e-19 Score=127.68 Aligned_cols=90 Identities=21% Similarity=0.293 Sum_probs=78.1
Q ss_pred eeEEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCe
Q 030523 76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPT 155 (175)
Q Consensus 76 ~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt 155 (175)
.+.+|++ ++|.+.+... ..+++++|+||++||++|+.+.|.++++++++ +++.|++||++++ . ++++|+|.++||
T Consensus 5 ~v~~i~~-~~f~~~i~~~-~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~-~~v~f~~vd~~~~-~-l~~~~~i~~~Pt 79 (113)
T cd02957 5 EVREISS-KEFLEEVTKA-SKGTRVVVHFYEPGFPRCKILDSHLEELAAKY-PETKFVKINAEKA-F-LVNYLDIKVLPT 79 (113)
T ss_pred eEEEEcH-HHHHHHHHcc-CCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCcEEEEEEchhh-H-HHHhcCCCcCCE
Confidence 3567777 7999988532 22489999999999999999999999999999 6799999999988 5 999999999999
Q ss_pred EEEEeecccceeccc
Q 030523 156 IQVIFFFPFYFTFLF 170 (175)
Q Consensus 156 ~~~f~~~~~~~~~~~ 170 (175)
+++|..+..-+++..
T Consensus 80 ~~~f~~G~~v~~~~G 94 (113)
T cd02957 80 LLVYKNGELIDNIVG 94 (113)
T ss_pred EEEEECCEEEEEEec
Confidence 999999988877643
No 13
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.79 E-value=6.8e-19 Score=123.21 Aligned_cols=77 Identities=31% Similarity=0.537 Sum_probs=70.8
Q ss_pred ChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEEEEee
Q 030523 82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQVIFF 161 (175)
Q Consensus 82 s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~f~~ 161 (175)
+.++|++.+. +++++++|+|||+||++|+.+.|.++++++++++.+.+++||++++++ ++++++|.++||+++|..
T Consensus 7 ~~~~f~~~i~---~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~i~~~Pt~~~~~~ 82 (104)
T cd03004 7 TPEDFPELVL---NRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYES-LCQQANIRAYPTIRLYPG 82 (104)
T ss_pred CHHHHHHHHh---cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHH-HHHHcCCCcccEEEEEcC
Confidence 4568999885 567799999999999999999999999999997789999999999987 999999999999999988
Q ss_pred c
Q 030523 162 F 162 (175)
Q Consensus 162 ~ 162 (175)
+
T Consensus 83 g 83 (104)
T cd03004 83 N 83 (104)
T ss_pred C
Confidence 7
No 14
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.78 E-value=2e-18 Score=119.11 Aligned_cols=81 Identities=20% Similarity=0.313 Sum_probs=71.0
Q ss_pred hHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEEEEeeccc
Q 030523 85 HLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQVIFFFPF 164 (175)
Q Consensus 85 ~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~f~~~~~ 164 (175)
+|++.+.+ ..+++++|+||++||++|+.+.|.++++++.+++.+.+++||++++++ ++++|+|.++||+++|..+..
T Consensus 2 ~f~~~i~~--~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~-l~~~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 2 NFQQVLQE--STQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQ-IAQQFGVQALPTVYLFAAGQP 78 (96)
T ss_pred ChHHHHHh--cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHH-HHHHcCCCCCCEEEEEeCCEE
Confidence 56777753 347899999999999999999999999999997789999999999997 999999999999999987765
Q ss_pred ceec
Q 030523 165 YFTF 168 (175)
Q Consensus 165 ~~~~ 168 (175)
-.++
T Consensus 79 ~~~~ 82 (96)
T cd02956 79 VDGF 82 (96)
T ss_pred eeee
Confidence 5443
No 15
>PTZ00051 thioredoxin; Provisional
Probab=99.78 E-value=2.4e-18 Score=118.95 Aligned_cols=88 Identities=27% Similarity=0.512 Sum_probs=79.7
Q ss_pred eEEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeE
Q 030523 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156 (175)
Q Consensus 77 ~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~ 156 (175)
+.++++.+++++++ +.+++++|+||++||++|+.+.|.++++++++ +++.++.+|++++.+ ++++|+|.++||+
T Consensus 2 v~~i~~~~~~~~~~----~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~-~~~~~~~vd~~~~~~-~~~~~~v~~~Pt~ 75 (98)
T PTZ00051 2 VHIVTSQAEFESTL----SQNELVIVDFYAEWCGPCKRIAPFYEECSKEY-TKMVFVKVDVDELSE-VAEKENITSMPTF 75 (98)
T ss_pred eEEecCHHHHHHHH----hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHc-CCcEEEEEECcchHH-HHHHCCCceeeEE
Confidence 46788899999998 68899999999999999999999999999988 679999999999886 9999999999999
Q ss_pred EEEeecccceeccc
Q 030523 157 QVIFFFPFYFTFLF 170 (175)
Q Consensus 157 ~~f~~~~~~~~~~~ 170 (175)
++|..+..-+++..
T Consensus 76 ~~~~~g~~~~~~~G 89 (98)
T PTZ00051 76 KVFKNGSVVDTLLG 89 (98)
T ss_pred EEEeCCeEEEEEeC
Confidence 99998887776653
No 16
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.1e-18 Score=141.40 Aligned_cols=89 Identities=26% Similarity=0.489 Sum_probs=80.0
Q ss_pred eEEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeE
Q 030523 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156 (175)
Q Consensus 77 ~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~ 156 (175)
++.||+. +|++.+..+ ...+||||+||+|||++|+.+.|.+++++.++++++.+++||||.++. ++..|||+++||+
T Consensus 25 I~dvT~a-nfe~~V~~~-S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~-vAaqfgiqsIPtV 101 (304)
T COG3118 25 IKDVTEA-NFEQEVIQS-SREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPM-VAAQFGVQSIPTV 101 (304)
T ss_pred ceechHh-HHHHHHHHH-ccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchh-HHHHhCcCcCCeE
Confidence 5666654 888888776 567799999999999999999999999999999999999999999997 9999999999999
Q ss_pred EEEeecccceec
Q 030523 157 QVIFFFPFYFTF 168 (175)
Q Consensus 157 ~~f~~~~~~~~~ 168 (175)
+.|+.|++---|
T Consensus 102 ~af~dGqpVdgF 113 (304)
T COG3118 102 YAFKDGQPVDGF 113 (304)
T ss_pred EEeeCCcCcccc
Confidence 999999875444
No 17
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.78 E-value=1.7e-18 Score=132.87 Aligned_cols=94 Identities=13% Similarity=0.143 Sum_probs=82.3
Q ss_pred ceeeEEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCcc
Q 030523 74 SVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKM 153 (175)
Q Consensus 74 ~~~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~ 153 (175)
.-.+.+|++.++|.+.+..+ ..+.+|||+||++||++|+.|.|.++++++++ +.++|++||+++. . ++.+|+|.++
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~-~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~-~~vkF~kVd~d~~-~-l~~~f~v~~v 136 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKE-GKDTTVVVHIYEPGIPGCAALNSSLLCLAAEY-PAVKFCKIRASAT-G-ASDEFDTDAL 136 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhc-CCCcEEEEEEECCCCchHHHHHHHHHHHHHHC-CCeEEEEEeccch-h-hHHhCCCCCC
Confidence 45678888878999998543 23469999999999999999999999999999 7899999999987 4 8999999999
Q ss_pred CeEEEEeecccceecccc
Q 030523 154 PTIQVIFFFPFYFTFLFA 171 (175)
Q Consensus 154 Pt~~~f~~~~~~~~~~~~ 171 (175)
||+++|+.+...+++...
T Consensus 137 PTlllyk~G~~v~~~vG~ 154 (175)
T cd02987 137 PALLVYKGGELIGNFVRV 154 (175)
T ss_pred CEEEEEECCEEEEEEech
Confidence 999999999998887643
No 18
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.77 E-value=3.4e-18 Score=120.73 Aligned_cols=81 Identities=30% Similarity=0.500 Sum_probs=71.1
Q ss_pred eEEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhC------CCeEEEEEEccCChHHHHHHcCC
Q 030523 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD------TKLKFYYVDVNKVSKDLVKRGNI 150 (175)
Q Consensus 77 ~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~------~~v~~~~vd~d~~~~~l~~~~~I 150 (175)
+.+++ .++|++.+ +.+++++|+|||+||++|+.+.|.++++++.++ +.+.+++||++++++ ++++|+|
T Consensus 3 v~~l~-~~~f~~~i----~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~-l~~~~~v 76 (108)
T cd02996 3 IVSLT-SGNIDDIL----QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESD-IADRYRI 76 (108)
T ss_pred eEEcC-HhhHHHHH----hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHH-HHHhCCC
Confidence 45554 56999988 578899999999999999999999999988752 258999999999986 9999999
Q ss_pred CccCeEEEEeecc
Q 030523 151 SKMPTIQVIFFFP 163 (175)
Q Consensus 151 ~~~Pt~~~f~~~~ 163 (175)
+++||+++|..+.
T Consensus 77 ~~~Ptl~~~~~g~ 89 (108)
T cd02996 77 NKYPTLKLFRNGM 89 (108)
T ss_pred CcCCEEEEEeCCc
Confidence 9999999999876
No 19
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.77 E-value=2.7e-18 Score=122.14 Aligned_cols=83 Identities=13% Similarity=0.109 Sum_probs=76.2
Q ss_pred ChhhHHHHHHHhhcCCCcEEEEEEcCC--ChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEEEE
Q 030523 82 DSDHLDQILLRAQELSQPILIDWMASW--CRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQVI 159 (175)
Q Consensus 82 s~~~f~~~l~~~~~~~k~vlV~F~a~w--C~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~f 159 (175)
+.++|++.+ +.+.+++|.||++| ||+|+.+.|.++++++++++.+.|++||++++++ ++.+|+|+++||+++|
T Consensus 16 ~~~~~~~~~----~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~-la~~f~V~sIPTli~f 90 (111)
T cd02965 16 DAATLDDWL----AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQA-LAARFGVLRTPALLFF 90 (111)
T ss_pred ccccHHHHH----hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHH-HHHHcCCCcCCEEEEE
Confidence 356899888 68899999999997 9999999999999999997779999999999996 9999999999999999
Q ss_pred eecccceecc
Q 030523 160 FFFPFYFTFL 169 (175)
Q Consensus 160 ~~~~~~~~~~ 169 (175)
+.|..-+++-
T Consensus 91 kdGk~v~~~~ 100 (111)
T cd02965 91 RDGRYVGVLA 100 (111)
T ss_pred ECCEEEEEEe
Confidence 9998887764
No 20
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.77 E-value=5.7e-18 Score=127.16 Aligned_cols=92 Identities=17% Similarity=0.384 Sum_probs=79.1
Q ss_pred eeeEEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCC-CeEEEEEEccCChHHHHHHcCCCc-
Q 030523 75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLVKRGNISK- 152 (175)
Q Consensus 75 ~~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~l~~~~~I~~- 152 (175)
..+.+++ .++|++.+.. ..+++++|+|||+||++|+.+.|.++++++++++ ++.|++||++++++ ++++|+|.+
T Consensus 28 ~~v~~l~-~~~f~~~l~~--~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~-la~~~~V~~~ 103 (152)
T cd02962 28 EHIKYFT-PKTLEEELER--DKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPN-VAEKFRVSTS 103 (152)
T ss_pred CccEEcC-HHHHHHHHHh--cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHH-HHHHcCceec
Confidence 3455555 4689988853 3567999999999999999999999999999853 59999999999997 999999998
Q ss_pred -----cCeEEEEeecccceeccc
Q 030523 153 -----MPTIQVIFFFPFYFTFLF 170 (175)
Q Consensus 153 -----~Pt~~~f~~~~~~~~~~~ 170 (175)
+||+++|..+...+++-.
T Consensus 104 ~~v~~~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 104 PLSKQLPTIILFQGGKEVARRPY 126 (152)
T ss_pred CCcCCCCEEEEEECCEEEEEEec
Confidence 999999999998887764
No 21
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.77 E-value=3.7e-18 Score=118.19 Aligned_cols=84 Identities=27% Similarity=0.505 Sum_probs=75.4
Q ss_pred ChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEEEEee
Q 030523 82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQVIFF 161 (175)
Q Consensus 82 s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~f~~ 161 (175)
+.++|++.+. +++++++|+||++||++|+.+.|.++++++.+.+++.|+.||+++++. ++++|+|.++||+++|..
T Consensus 5 t~~~f~~~i~---~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~-l~~~~~v~~~Pt~~~~~~ 80 (103)
T PF00085_consen 5 TDENFEKFIN---ESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKE-LCKKYGVKSVPTIIFFKN 80 (103)
T ss_dssp STTTHHHHHT---TTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHH-HHHHTTCSSSSEEEEEET
T ss_pred CHHHHHHHHH---ccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccch-hhhccCCCCCCEEEEEEC
Confidence 4568999993 348999999999999999999999999999996699999999999986 999999999999999999
Q ss_pred cccceecc
Q 030523 162 FPFYFTFL 169 (175)
Q Consensus 162 ~~~~~~~~ 169 (175)
+....++-
T Consensus 81 g~~~~~~~ 88 (103)
T PF00085_consen 81 GKEVKRYN 88 (103)
T ss_dssp TEEEEEEE
T ss_pred CcEEEEEE
Confidence 87766543
No 22
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.76 E-value=5.2e-18 Score=122.61 Aligned_cols=85 Identities=20% Similarity=0.154 Sum_probs=74.8
Q ss_pred eeEEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChh--hh--hchHHHHHHHHHh--CCCeEEEEEEccCChHHHHHHcC
Q 030523 76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRK--CI--YLKPKLEKLAAEF--DTKLKFYYVDVNKVSKDLVKRGN 149 (175)
Q Consensus 76 ~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~--C~--~~~p~l~~l~~~~--~~~v~~~~vd~d~~~~~l~~~~~ 149 (175)
.+..++ .++|++.+. +++.++|++||++||++ |+ .+.|.+.+++.++ .+++.|++||+|++++ ++++|+
T Consensus 10 ~v~~lt-~~nF~~~v~---~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~-La~~~~ 84 (120)
T cd03065 10 RVIDLN-EKNYKQVLK---KYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAK-VAKKLG 84 (120)
T ss_pred ceeeCC-hhhHHHHHH---hCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHH-HHHHcC
Confidence 345554 479999986 57789999999999987 99 8999999999998 7889999999999997 999999
Q ss_pred CCccCeEEEEeecccc
Q 030523 150 ISKMPTIQVIFFFPFY 165 (175)
Q Consensus 150 I~~~Pt~~~f~~~~~~ 165 (175)
|+++||+++|+.|..-
T Consensus 85 I~~iPTl~lfk~G~~v 100 (120)
T cd03065 85 LDEEDSIYVFKDDEVI 100 (120)
T ss_pred CccccEEEEEECCEEE
Confidence 9999999999988754
No 23
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.76 E-value=4.2e-18 Score=121.28 Aligned_cols=85 Identities=18% Similarity=0.374 Sum_probs=72.3
Q ss_pred ChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCC-CeEEEEEEccCChHHHHHHcCCCccCeEEEEe
Q 030523 82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLVKRGNISKMPTIQVIF 160 (175)
Q Consensus 82 s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~f~ 160 (175)
+.++|++.+... ..+++++|+|||+||++|+.+.|.++++++++++ ++.+++||+++++. ++++++|.++||+++|.
T Consensus 10 ~~~~~~~~~~~~-~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~-l~~~~~V~~~Pt~~i~~ 87 (111)
T cd02963 10 TFSQYENEIVPK-SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERR-LARKLGAHSVPAIVGII 87 (111)
T ss_pred eHHHHHHhhccc-cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHH-HHHHcCCccCCEEEEEE
Confidence 456777655322 3789999999999999999999999999999954 59999999999987 99999999999999998
Q ss_pred ecccceec
Q 030523 161 FFPFYFTF 168 (175)
Q Consensus 161 ~~~~~~~~ 168 (175)
.+..-+++
T Consensus 88 ~g~~~~~~ 95 (111)
T cd02963 88 NGQVTFYH 95 (111)
T ss_pred CCEEEEEe
Confidence 88765554
No 24
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.75 E-value=9.1e-18 Score=117.57 Aligned_cols=79 Identities=15% Similarity=0.275 Sum_probs=67.1
Q ss_pred hHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEcc-CChHHHHHHcCCCccCeEEEEeecc
Q 030523 85 HLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN-KVSKDLVKRGNISKMPTIQVIFFFP 163 (175)
Q Consensus 85 ~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d-~~~~~l~~~~~I~~~Pt~~~f~~~~ 163 (175)
.+.+++.+ .++++++|+|||+||++|+.+.|.++++++++ +++.++.||.+ ++++ ++++|+|.++||+++|..+
T Consensus 8 ~~~~~~~~--~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~-~~~~~~~vd~~~~~~~-l~~~~~V~~~PT~~lf~~g- 82 (100)
T cd02999 8 IALDLMAF--NREDYTAVLFYASWCPFSASFRPHFNALSSMF-PQIRHLAIEESSIKPS-LLSRYGVVGFPTILLFNST- 82 (100)
T ss_pred HHHHHHHh--cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHh-ccCceEEEECCCCCHH-HHHhcCCeecCEEEEEcCC-
Confidence 44455543 58999999999999999999999999999999 56899999998 6776 9999999999999999876
Q ss_pred cceec
Q 030523 164 FYFTF 168 (175)
Q Consensus 164 ~~~~~ 168 (175)
.-.++
T Consensus 83 ~~~~~ 87 (100)
T cd02999 83 PRVRY 87 (100)
T ss_pred ceeEe
Confidence 33343
No 25
>PRK09381 trxA thioredoxin; Provisional
Probab=99.74 E-value=1.7e-17 Score=117.06 Aligned_cols=88 Identities=24% Similarity=0.437 Sum_probs=76.7
Q ss_pred eeEEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCe
Q 030523 76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPT 155 (175)
Q Consensus 76 ~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt 155 (175)
.++++++ ++|++.+. +.+++++|+||++||++|+.+.|.++++++++.+++.++.+|++.++. ++++|+|.++||
T Consensus 4 ~v~~~~~-~~~~~~v~---~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~Pt 78 (109)
T PRK09381 4 KIIHLTD-DSFDTDVL---KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG-TAPKYGIRGIPT 78 (109)
T ss_pred cceeeCh-hhHHHHHh---cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChh-HHHhCCCCcCCE
Confidence 4566655 57887654 568899999999999999999999999999998889999999999987 899999999999
Q ss_pred EEEEeecccceec
Q 030523 156 IQVIFFFPFYFTF 168 (175)
Q Consensus 156 ~~~f~~~~~~~~~ 168 (175)
+++|..+..-+++
T Consensus 79 ~~~~~~G~~~~~~ 91 (109)
T PRK09381 79 LLLFKNGEVAATK 91 (109)
T ss_pred EEEEeCCeEEEEe
Confidence 9999987766554
No 26
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.74 E-value=1.8e-17 Score=114.24 Aligned_cols=83 Identities=16% Similarity=0.324 Sum_probs=72.9
Q ss_pred ChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEEEEee
Q 030523 82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQVIFF 161 (175)
Q Consensus 82 s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~f~~ 161 (175)
|.++|++++..+ .+++++|+||++||++|+.+.|.++++++++.+++.++++|+++.++ ++++|+|.++||+++|..
T Consensus 1 s~~~~~~~~~~~--~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~-~~~~~~i~~~Pt~~~~~~ 77 (97)
T cd02984 1 SEEEFEELLKSD--ASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPE-ISEKFEITAVPTFVFFRN 77 (97)
T ss_pred CHHHHHHHHhhC--CCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHH-HHHhcCCccccEEEEEEC
Confidence 357899998643 26999999999999999999999999999965789999999999987 999999999999999987
Q ss_pred ccccee
Q 030523 162 FPFYFT 167 (175)
Q Consensus 162 ~~~~~~ 167 (175)
+..-++
T Consensus 78 g~~~~~ 83 (97)
T cd02984 78 GTIVDR 83 (97)
T ss_pred CEEEEE
Confidence 765544
No 27
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.73 E-value=2.1e-17 Score=116.23 Aligned_cols=80 Identities=24% Similarity=0.467 Sum_probs=71.2
Q ss_pred EcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccC--ChHHHHHHcCCCccCeE
Q 030523 79 PINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK--VSKDLVKRGNISKMPTI 156 (175)
Q Consensus 79 ~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~--~~~~l~~~~~I~~~Pt~ 156 (175)
+++ .++|++.+. +.+++++|+|||+||++|+.+.|.++++++.+++.+.++.+|++. +++ ++++|+|.++||+
T Consensus 4 ~l~-~~~~~~~i~---~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~-~~~~~~i~~~Pt~ 78 (109)
T cd03002 4 ELT-PKNFDKVVH---NTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKP-LCGKYGVQGFPTL 78 (109)
T ss_pred Ecc-hhhHHHHHh---cCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHH-HHHHcCCCcCCEE
Confidence 444 458888885 567889999999999999999999999999997789999999998 665 9999999999999
Q ss_pred EEEeecc
Q 030523 157 QVIFFFP 163 (175)
Q Consensus 157 ~~f~~~~ 163 (175)
++|..+.
T Consensus 79 ~~~~~~~ 85 (109)
T cd03002 79 KVFRPPK 85 (109)
T ss_pred EEEeCCC
Confidence 9999885
No 28
>PRK10996 thioredoxin 2; Provisional
Probab=99.73 E-value=3.4e-17 Score=121.17 Aligned_cols=82 Identities=29% Similarity=0.493 Sum_probs=74.6
Q ss_pred ChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEEEEee
Q 030523 82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQVIFF 161 (175)
Q Consensus 82 s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~f~~ 161 (175)
+.++|++++ +++++++|+||++||++|+.+.|.++++++++.+++.++++|++++++ ++++|+|.++||+++|..
T Consensus 41 ~~~~~~~~i----~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~-l~~~~~V~~~Ptlii~~~ 115 (139)
T PRK10996 41 TGETLDKLL----QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERE-LSARFRIRSIPTIMIFKN 115 (139)
T ss_pred CHHHHHHHH----hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHH-HHHhcCCCccCEEEEEEC
Confidence 567899988 678999999999999999999999999999987789999999999997 999999999999999988
Q ss_pred cccceec
Q 030523 162 FPFYFTF 168 (175)
Q Consensus 162 ~~~~~~~ 168 (175)
+....++
T Consensus 116 G~~v~~~ 122 (139)
T PRK10996 116 GQVVDML 122 (139)
T ss_pred CEEEEEE
Confidence 7766554
No 29
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.73 E-value=4.3e-17 Score=113.44 Aligned_cols=80 Identities=26% Similarity=0.409 Sum_probs=68.5
Q ss_pred eEEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCC-CeEEEEEEccCChHHHHHHcCCCccCe
Q 030523 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLVKRGNISKMPT 155 (175)
Q Consensus 77 ~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~l~~~~~I~~~Pt 155 (175)
+.+++ .++|++++ + ++ ++|+|||+||++|+.+.|.++++++.++. ++.++++|+++++. ++++|+|.++||
T Consensus 3 v~~l~-~~~f~~~~----~-~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~-~~~~~~i~~~Pt 74 (101)
T cd02994 3 VVELT-DSNWTLVL----E-GE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPG-LSGRFFVTALPT 74 (101)
T ss_pred eEEcC-hhhHHHHh----C-CC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHh-HHHHcCCcccCE
Confidence 45554 56899877 3 33 78999999999999999999999988753 69999999999986 999999999999
Q ss_pred EEEEeeccc
Q 030523 156 IQVIFFFPF 164 (175)
Q Consensus 156 ~~~f~~~~~ 164 (175)
+++|..+..
T Consensus 75 ~~~~~~g~~ 83 (101)
T cd02994 75 IYHAKDGVF 83 (101)
T ss_pred EEEeCCCCE
Confidence 999887753
No 30
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.72 E-value=4.4e-17 Score=113.07 Aligned_cols=85 Identities=21% Similarity=0.376 Sum_probs=72.5
Q ss_pred EEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCC---CeEEEEEEccCChHHHHHHcCCCccC
Q 030523 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT---KLKFYYVDVNKVSKDLVKRGNISKMP 154 (175)
Q Consensus 78 ~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~~~~~l~~~~~I~~~P 154 (175)
.+++ .++|++.+ .++ +++|+|||+||++|+.+.|.++++++++++ ++.++++|+++++. ++++|+|.++|
T Consensus 3 ~~l~-~~~f~~~~----~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~P 75 (102)
T cd03005 3 LELT-EDNFDHHI----AEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRE-LCSEFQVRGYP 75 (102)
T ss_pred eECC-HHHHHHHh----hcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChh-hHhhcCCCcCC
Confidence 3444 46899998 343 599999999999999999999999999865 79999999999986 99999999999
Q ss_pred eEEEEeecccceecc
Q 030523 155 TIQVIFFFPFYFTFL 169 (175)
Q Consensus 155 t~~~f~~~~~~~~~~ 169 (175)
|+++|..+..-.++.
T Consensus 76 t~~~~~~g~~~~~~~ 90 (102)
T cd03005 76 TLLLFKDGEKVDKYK 90 (102)
T ss_pred EEEEEeCCCeeeEee
Confidence 999998887555543
No 31
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.72 E-value=5e-17 Score=112.96 Aligned_cols=81 Identities=23% Similarity=0.409 Sum_probs=71.2
Q ss_pred eEEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeE
Q 030523 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156 (175)
Q Consensus 77 ~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~ 156 (175)
+.+++ .++|++.+. +.+++++|+||++||++|+.+.|.+.++++++.+.+.++.+|++++++ ++++|+|+++||+
T Consensus 2 v~~l~-~~~~~~~i~---~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~~~~~~i~~~P~~ 76 (103)
T cd03001 2 VVELT-DSNFDKKVL---NSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQS-LAQQYGVRGFPTI 76 (103)
T ss_pred eEEcC-HHhHHHHHh---cCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHH-HHHHCCCCccCEE
Confidence 34454 458888875 456779999999999999999999999999987789999999999987 9999999999999
Q ss_pred EEEeec
Q 030523 157 QVIFFF 162 (175)
Q Consensus 157 ~~f~~~ 162 (175)
++|..+
T Consensus 77 ~~~~~~ 82 (103)
T cd03001 77 KVFGAG 82 (103)
T ss_pred EEECCC
Confidence 999876
No 32
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1e-17 Score=132.54 Aligned_cols=89 Identities=20% Similarity=0.340 Sum_probs=80.3
Q ss_pred eeeEEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccC
Q 030523 75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMP 154 (175)
Q Consensus 75 ~~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~P 154 (175)
|.+..|.++.+|+..+.. ...+.++|+|+|+||+||+.++|.++.++.+| ++..|++||+|++.. .+..+||.++|
T Consensus 1 m~Vi~v~~d~df~~~ls~--ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankY-p~aVFlkVdVd~c~~-taa~~gV~amP 76 (288)
T KOG0908|consen 1 MPVIVVNSDSDFQRELSA--AGGKLVVVDFTASWCGPCKRIAPIFSDLANKY-PGAVFLKVDVDECRG-TAATNGVNAMP 76 (288)
T ss_pred CCeEEecCcHHHHHhhhc--cCceEEEEEEEecccchHHhhhhHHHHhhhhC-cccEEEEEeHHHhhc-hhhhcCcccCc
Confidence 457889999999999965 47789999999999999999999999999999 889999999999987 89999999999
Q ss_pred eEEEEeeccccee
Q 030523 155 TIQVIFFFPFYFT 167 (175)
Q Consensus 155 t~~~f~~~~~~~~ 167 (175)
||++|-++.---+
T Consensus 77 TFiff~ng~kid~ 89 (288)
T KOG0908|consen 77 TFIFFRNGVKIDQ 89 (288)
T ss_pred eEEEEecCeEeee
Confidence 9999988764433
No 33
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.71 E-value=1.5e-16 Score=110.62 Aligned_cols=86 Identities=23% Similarity=0.409 Sum_probs=72.6
Q ss_pred eEEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhC--CCeEEEEEEccC--ChHHHHHHcCCCc
Q 030523 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD--TKLKFYYVDVNK--VSKDLVKRGNISK 152 (175)
Q Consensus 77 ~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~d~--~~~~l~~~~~I~~ 152 (175)
+.+++ .++|++.+ +++++++|+||++||++|+.+.|.++++++.++ +.+.++.+|++. ++. ++++++|++
T Consensus 2 ~~~l~-~~~~~~~~----~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~-~~~~~~i~~ 75 (104)
T cd02997 2 VVHLT-DEDFRKFL----KKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDA-LKEEYNVKG 75 (104)
T ss_pred eEEec-hHhHHHHH----hhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHH-HHHhCCCcc
Confidence 34554 45899888 567799999999999999999999999999885 568999999998 775 899999999
Q ss_pred cCeEEEEeecccceec
Q 030523 153 MPTIQVIFFFPFYFTF 168 (175)
Q Consensus 153 ~Pt~~~f~~~~~~~~~ 168 (175)
+||+++|..+..-.++
T Consensus 76 ~Pt~~~~~~g~~~~~~ 91 (104)
T cd02997 76 FPTFKYFENGKFVEKY 91 (104)
T ss_pred ccEEEEEeCCCeeEEe
Confidence 9999999877654433
No 34
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.70 E-value=1.3e-16 Score=113.04 Aligned_cols=85 Identities=16% Similarity=0.318 Sum_probs=69.8
Q ss_pred eEEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCC-CeEEEEEEccCChHHHHH-HcCCCccC
Q 030523 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLVK-RGNISKMP 154 (175)
Q Consensus 77 ~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~l~~-~~~I~~~P 154 (175)
+.+++ .++|+.++... +++++++|.||++||++|+.+.|.++++++.+++ ++.++.||++.+...++. .++|.++|
T Consensus 3 v~~~~-~~~~~~~~~~~-~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~P 80 (109)
T cd02993 3 VVTLS-RAEIEALAKGE-RRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFP 80 (109)
T ss_pred ceecc-HHHHHHHHhhh-hcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCC
Confidence 34444 45888888543 5789999999999999999999999999999965 599999999984223776 59999999
Q ss_pred eEEEEeecc
Q 030523 155 TIQVIFFFP 163 (175)
Q Consensus 155 t~~~f~~~~ 163 (175)
|+++|..+.
T Consensus 81 ti~~f~~~~ 89 (109)
T cd02993 81 TILFFPKNS 89 (109)
T ss_pred EEEEEcCCC
Confidence 999997654
No 35
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.70 E-value=1.5e-16 Score=126.42 Aligned_cols=90 Identities=21% Similarity=0.409 Sum_probs=77.0
Q ss_pred eeEEcCChhhHHHHHHHhh-cCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccC
Q 030523 76 ELEPINDSDHLDQILLRAQ-ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMP 154 (175)
Q Consensus 76 ~~~~i~s~~~f~~~l~~~~-~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~P 154 (175)
.+.+++ .++|++.+..+. ..+++++|+|||+||++|+.+.|.++++++++++.+.++++|++++++ ++++|+|.++|
T Consensus 31 ~Vv~Lt-~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~-l~~~~~I~~~P 108 (224)
T PTZ00443 31 ALVLLN-DKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALN-LAKRFAIKGYP 108 (224)
T ss_pred CcEECC-HHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHH-HHHHcCCCcCC
Confidence 355554 569999885431 246899999999999999999999999999998789999999999986 99999999999
Q ss_pred eEEEEeeccccee
Q 030523 155 TIQVIFFFPFYFT 167 (175)
Q Consensus 155 t~~~f~~~~~~~~ 167 (175)
|+++|..+.+...
T Consensus 109 Tl~~f~~G~~v~~ 121 (224)
T PTZ00443 109 TLLLFDKGKMYQY 121 (224)
T ss_pred EEEEEECCEEEEe
Confidence 9999998776543
No 36
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.68 E-value=4.2e-16 Score=107.30 Aligned_cols=82 Identities=26% Similarity=0.505 Sum_probs=72.2
Q ss_pred hhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEEEEeec
Q 030523 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQVIFFF 162 (175)
Q Consensus 83 ~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~f~~~ 162 (175)
.++|.+.+. +.+++++|+||++||++|+.+.|.++++++++++++.++.+|+++++. ++++|+|.++||+++|..+
T Consensus 3 ~~~~~~~~~---~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~P~~~~~~~g 78 (101)
T TIGR01068 3 DANFDETIA---SSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPD-IAAKYGIRSIPTLLLFKNG 78 (101)
T ss_pred HHHHHHHHh---hcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHH-HHHHcCCCcCCEEEEEeCC
Confidence 467888874 456799999999999999999999999999987789999999999986 8999999999999999887
Q ss_pred ccceec
Q 030523 163 PFYFTF 168 (175)
Q Consensus 163 ~~~~~~ 168 (175)
....++
T Consensus 79 ~~~~~~ 84 (101)
T TIGR01068 79 KEVDRS 84 (101)
T ss_pred cEeeee
Confidence 655444
No 37
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.68 E-value=1.9e-16 Score=111.09 Aligned_cols=75 Identities=21% Similarity=0.390 Sum_probs=65.2
Q ss_pred hhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhC---CCeEEEEEEccCChHHHHHHcCCCccCeEEEEe
Q 030523 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD---TKLKFYYVDVNKVSKDLVKRGNISKMPTIQVIF 160 (175)
Q Consensus 84 ~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~---~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~f~ 160 (175)
++|+++. ++++++|.||++||++|+.+.|.+++++++++ .++.++.+|++..+. ++++|+|.++||+++|.
T Consensus 7 ~~~~~~~-----~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~I~~~Pt~~l~~ 80 (104)
T cd03000 7 DSFKDVR-----KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSS-IASEFGVRGYPTIKLLK 80 (104)
T ss_pred hhhhhhc-----cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHh-HHhhcCCccccEEEEEc
Confidence 5677643 57899999999999999999999999999883 359999999999886 99999999999999997
Q ss_pred eccc
Q 030523 161 FFPF 164 (175)
Q Consensus 161 ~~~~ 164 (175)
.+..
T Consensus 81 ~~~~ 84 (104)
T cd03000 81 GDLA 84 (104)
T ss_pred CCCc
Confidence 6543
No 38
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.68 E-value=1.7e-16 Score=111.12 Aligned_cols=80 Identities=23% Similarity=0.317 Sum_probs=66.8
Q ss_pred hhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHH---HHHHHHhCCCeEEEEEEccCC---hHHHHHHcCCCccCeEE
Q 030523 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNKV---SKDLVKRGNISKMPTIQ 157 (175)
Q Consensus 84 ~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~---~~~l~~~~~I~~~Pt~~ 157 (175)
++|++++ +++++++|+||++||++|+.+.|.+ .++++.+++++.++.+|++++ ..+++++|+|.++||++
T Consensus 2 ~~~~~~~----~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~ 77 (104)
T cd02953 2 AALAQAL----AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYL 77 (104)
T ss_pred HHHHHHH----HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEE
Confidence 4677777 6889999999999999999999988 678888866899999999873 22489999999999999
Q ss_pred EEe--eccccee
Q 030523 158 VIF--FFPFYFT 167 (175)
Q Consensus 158 ~f~--~~~~~~~ 167 (175)
+|. .+....+
T Consensus 78 ~~~~~~g~~~~~ 89 (104)
T cd02953 78 FYGPGGEPEPLR 89 (104)
T ss_pred EECCCCCCCCcc
Confidence 997 4554433
No 39
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.68 E-value=2.6e-16 Score=116.93 Aligned_cols=81 Identities=17% Similarity=0.340 Sum_probs=68.8
Q ss_pred hhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCCh-HHHHHHcCCCccCeEEEEe-e
Q 030523 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS-KDLVKRGNISKMPTIQVIF-F 161 (175)
Q Consensus 84 ~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-~~l~~~~~I~~~Pt~~~f~-~ 161 (175)
.+++.++ ..++++||+|||+||++|+.+.|.++++++++.+++.|+.||+|... ..++++|+|.++||+++|. .
T Consensus 11 ~~~~~a~----~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~ 86 (142)
T cd02950 11 TPPEVAL----SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDRE 86 (142)
T ss_pred CCHHHHH----hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCC
Confidence 4677777 68999999999999999999999999999999777899999998753 2389999999999999994 6
Q ss_pred cccceec
Q 030523 162 FPFYFTF 168 (175)
Q Consensus 162 ~~~~~~~ 168 (175)
+..-+++
T Consensus 87 G~~v~~~ 93 (142)
T cd02950 87 GNEEGQS 93 (142)
T ss_pred CCEEEEE
Confidence 6655544
No 40
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.68 E-value=4.7e-16 Score=107.49 Aligned_cols=77 Identities=29% Similarity=0.487 Sum_probs=70.7
Q ss_pred hhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCC--CeEEEEEEccCChHHHHHHcCCCccCeEEEEe
Q 030523 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT--KLKFYYVDVNKVSKDLVKRGNISKMPTIQVIF 160 (175)
Q Consensus 83 ~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~f~ 160 (175)
.++|++.+ .++++++|+||++||++|+.+.|.++++++.+++ ++.++.+|+++++. ++++|+|.++|++++|.
T Consensus 3 ~~~~~~~~----~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~i~~~P~~~~~~ 77 (102)
T TIGR01126 3 ASNFDDIV----LSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKD-LASRFGVSGFPTIKFFP 77 (102)
T ss_pred hhhHHHHh----ccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHH-HHHhCCCCcCCEEEEec
Confidence 46888888 6899999999999999999999999999999865 69999999999987 99999999999999999
Q ss_pred eccc
Q 030523 161 FFPF 164 (175)
Q Consensus 161 ~~~~ 164 (175)
.+..
T Consensus 78 ~~~~ 81 (102)
T TIGR01126 78 KGKK 81 (102)
T ss_pred CCCc
Confidence 8874
No 41
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.67 E-value=2.7e-16 Score=113.44 Aligned_cols=81 Identities=19% Similarity=0.388 Sum_probs=69.6
Q ss_pred EcCChhhHHHHHHHhhcCCCcEEEEEEc-------CCChhhhhchHHHHHHHHHhCCCeEEEEEEccCCh------HHHH
Q 030523 79 PINDSDHLDQILLRAQELSQPILIDWMA-------SWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS------KDLV 145 (175)
Q Consensus 79 ~i~s~~~f~~~l~~~~~~~k~vlV~F~a-------~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~------~~l~ 145 (175)
.+.+.++|.+.+.. .++++++|+||| +||++|+.+.|.++++++++++++.|++||+++.+ ..++
T Consensus 5 ~~~~~~~f~~~i~~--~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~ 82 (119)
T cd02952 5 AVRGYEEFLKLLKS--HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFR 82 (119)
T ss_pred cccCHHHHHHHHHh--cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhH
Confidence 45678899999953 247899999999 99999999999999999999668999999998642 2389
Q ss_pred HHcCCC-ccCeEEEEee
Q 030523 146 KRGNIS-KMPTIQVIFF 161 (175)
Q Consensus 146 ~~~~I~-~~Pt~~~f~~ 161 (175)
.+++|. ++||+++|.-
T Consensus 83 ~~~~I~~~iPT~~~~~~ 99 (119)
T cd02952 83 TDPKLTTGVPTLLRWKT 99 (119)
T ss_pred hccCcccCCCEEEEEcC
Confidence 999999 9999999954
No 42
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.66 E-value=3.9e-16 Score=121.47 Aligned_cols=92 Identities=17% Similarity=0.120 Sum_probs=76.1
Q ss_pred ceeeEEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCcc
Q 030523 74 SVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKM 153 (175)
Q Consensus 74 ~~~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~ 153 (175)
.-.+.+|+. ++|...+..+ ..+.+|||+||++||++|+.|.|.+++++++| +.++|++||++.. ..+|+|.++
T Consensus 81 ~G~v~eis~-~~f~~eV~~a-s~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~-~~vkFvkI~ad~~----~~~~~i~~l 153 (192)
T cd02988 81 FGEVYEISK-PDYVREVTEA-SKDTWVVVHLYKDGIPLCRLLNQHLSELARKF-PDTKFVKIISTQC----IPNYPDKNL 153 (192)
T ss_pred CCeEEEeCH-HHHHHHHHhc-CCCCEEEEEEECCCCchHHHHHHHHHHHHHHC-CCCEEEEEEhHHh----HhhCCCCCC
Confidence 345677754 5677666433 23469999999999999999999999999999 6899999999853 578999999
Q ss_pred CeEEEEeecccceeccccc
Q 030523 154 PTIQVIFFFPFYFTFLFAK 172 (175)
Q Consensus 154 Pt~~~f~~~~~~~~~~~~~ 172 (175)
||+++|+.|..-+++....
T Consensus 154 PTlliyk~G~~v~~ivG~~ 172 (192)
T cd02988 154 PTILVYRNGDIVKQFIGLL 172 (192)
T ss_pred CEEEEEECCEEEEEEeCch
Confidence 9999999999998887543
No 43
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.66 E-value=9e-16 Score=106.42 Aligned_cols=81 Identities=25% Similarity=0.384 Sum_probs=71.3
Q ss_pred hHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEEEEeeccc
Q 030523 85 HLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQVIFFFPF 164 (175)
Q Consensus 85 ~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~f~~~~~ 164 (175)
.++..+. +.+++++|+||++||+.|+.+.|.++++++++.+++.++++|++++++ ++++++|.++||+++|..+..
T Consensus 4 ~~~~~~~---~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~-l~~~~~v~~vPt~~i~~~g~~ 79 (97)
T cd02949 4 ALRKLYH---ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQE-IAEAAGIMGTPTVQFFKDKEL 79 (97)
T ss_pred hHHHHHH---hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHH-HHHHCCCeeccEEEEEECCeE
Confidence 3555565 688999999999999999999999999999997789999999999987 999999999999999988776
Q ss_pred ceecc
Q 030523 165 YFTFL 169 (175)
Q Consensus 165 ~~~~~ 169 (175)
-+++.
T Consensus 80 v~~~~ 84 (97)
T cd02949 80 VKEIS 84 (97)
T ss_pred EEEEe
Confidence 65553
No 44
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.66 E-value=5.4e-16 Score=111.00 Aligned_cols=84 Identities=23% Similarity=0.392 Sum_probs=69.9
Q ss_pred EEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhC---CCeEEEEEEccC--ChHHHHHHcCCCc
Q 030523 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD---TKLKFYYVDVNK--VSKDLVKRGNISK 152 (175)
Q Consensus 78 ~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~---~~v~~~~vd~d~--~~~~l~~~~~I~~ 152 (175)
.++ +.++|++.+. +.+++++|+||++||++|+.+.|.++++++.++ +.+.++.+|++. +++ ++++|+|++
T Consensus 4 ~~l-~~~~f~~~i~---~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~-~~~~~~i~~ 78 (114)
T cd02992 4 IVL-DAASFNSALL---GSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVA-LCRDFGVTG 78 (114)
T ss_pred EEC-CHHhHHHHHh---cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHH-HHHhCCCCC
Confidence 344 4568999985 455899999999999999999999999999874 358999999864 444 899999999
Q ss_pred cCeEEEEeecccce
Q 030523 153 MPTIQVIFFFPFYF 166 (175)
Q Consensus 153 ~Pt~~~f~~~~~~~ 166 (175)
+||+++|..+..-|
T Consensus 79 ~Pt~~lf~~~~~~~ 92 (114)
T cd02992 79 YPTLRYFPPFSKEA 92 (114)
T ss_pred CCEEEEECCCCccC
Confidence 99999998876544
No 45
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.66 E-value=7.6e-16 Score=106.97 Aligned_cols=80 Identities=26% Similarity=0.498 Sum_probs=69.5
Q ss_pred EEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhC--CCeEEEEEEccC-ChHHHHHHcCCCccC
Q 030523 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD--TKLKFYYVDVNK-VSKDLVKRGNISKMP 154 (175)
Q Consensus 78 ~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~d~-~~~~l~~~~~I~~~P 154 (175)
.+++ .+++++.+. +.+++++|+||++||++|+.+.|.++++++.++ +++.++.+|++. +++ ++++|+|.++|
T Consensus 3 ~~l~-~~~~~~~~~---~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~~~i~~~P 77 (105)
T cd02998 3 VELT-DSNFDKVVG---DDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKD-LAKKYGVSGFP 77 (105)
T ss_pred EEcc-hhcHHHHhc---CCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchh-hHHhCCCCCcC
Confidence 3444 358888774 456699999999999999999999999999985 469999999999 886 99999999999
Q ss_pred eEEEEeec
Q 030523 155 TIQVIFFF 162 (175)
Q Consensus 155 t~~~f~~~ 162 (175)
++++|..+
T Consensus 78 ~~~~~~~~ 85 (105)
T cd02998 78 TLKFFPKG 85 (105)
T ss_pred EEEEEeCC
Confidence 99999876
No 46
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.65 E-value=6.9e-16 Score=110.34 Aligned_cols=70 Identities=17% Similarity=0.111 Sum_probs=63.8
Q ss_pred cCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEEEEeecccce
Q 030523 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQVIFFFPFYF 166 (175)
Q Consensus 95 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~f~~~~~~~ 166 (175)
..+..++|+||++||++|+.+.|.++++++.+ +++.++.+|++++++ ++++|+|.++||+++|..+.-.|
T Consensus 20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~-l~~~~~v~~vPt~~i~~~g~~~~ 89 (113)
T cd02975 20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKE-KAEKYGVERVPTTIFLQDGGKDG 89 (113)
T ss_pred CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHH-HHHHcCCCcCCEEEEEeCCeecc
Confidence 57888999999999999999999999999887 789999999999986 99999999999999998765444
No 47
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.65 E-value=1.3e-15 Score=105.78 Aligned_cols=80 Identities=20% Similarity=0.407 Sum_probs=68.9
Q ss_pred EEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCC--CeEEEEEEccCChHHHHHHcCCCccCe
Q 030523 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT--KLKFYYVDVNKVSKDLVKRGNISKMPT 155 (175)
Q Consensus 78 ~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~~~l~~~~~I~~~Pt 155 (175)
.+++ .++|++.+. +.+++++|+||++||++|+.+.|.++++++.++. ++.++++|++++. ++..+++.++||
T Consensus 3 ~~l~-~~~f~~~i~---~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~~~~~~Pt 76 (104)
T cd02995 3 KVVV-GKNFDEVVL---DSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAND--VPSEFVVDGFPT 76 (104)
T ss_pred EEEc-hhhhHHHHh---CCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchh--hhhhccCCCCCE
Confidence 3444 458988885 4568999999999999999999999999999854 5999999999873 788899999999
Q ss_pred EEEEeecc
Q 030523 156 IQVIFFFP 163 (175)
Q Consensus 156 ~~~f~~~~ 163 (175)
+++|..+.
T Consensus 77 ~~~~~~~~ 84 (104)
T cd02995 77 ILFFPAGD 84 (104)
T ss_pred EEEEcCCC
Confidence 99998876
No 48
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.64 E-value=2e-15 Score=103.12 Aligned_cols=75 Identities=31% Similarity=0.538 Sum_probs=68.7
Q ss_pred hhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHh--CCCeEEEEEEccCChHHHHHHcCCCccCeEEEEe
Q 030523 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEF--DTKLKFYYVDVNKVSKDLVKRGNISKMPTIQVIF 160 (175)
Q Consensus 83 ~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~--~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~f~ 160 (175)
.++|.+.+ .++++++|+||++||++|+.+.|.++++++.+ .+.+.++.+|+++++. ++++|+|.++||+++|.
T Consensus 5 ~~~~~~~i----~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~i~~~Pt~~~~~ 79 (101)
T cd02961 5 DDNFDELV----KDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANND-LCSEYGVRGYPTIKLFP 79 (101)
T ss_pred HHHHHHHH----hCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHH-HHHhCCCCCCCEEEEEc
Confidence 45888888 56679999999999999999999999999998 5789999999999886 99999999999999998
Q ss_pred ec
Q 030523 161 FF 162 (175)
Q Consensus 161 ~~ 162 (175)
.+
T Consensus 80 ~~ 81 (101)
T cd02961 80 NG 81 (101)
T ss_pred CC
Confidence 76
No 49
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.60 E-value=3.2e-15 Score=107.61 Aligned_cols=84 Identities=17% Similarity=0.255 Sum_probs=66.3
Q ss_pred hHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCc--cCeEEEEe-e
Q 030523 85 HLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISK--MPTIQVIF-F 161 (175)
Q Consensus 85 ~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~--~Pt~~~f~-~ 161 (175)
++++.+..++.++++++|+|||+||++|+.|.|.+.+..........|+.||++.+.+...++|++.+ +||+++|- .
T Consensus 7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~ 86 (117)
T cd02959 7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPS 86 (117)
T ss_pred eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCC
Confidence 46777776668999999999999999999999999987665434457788888876543568899987 99999995 6
Q ss_pred cccceec
Q 030523 162 FPFYFTF 168 (175)
Q Consensus 162 ~~~~~~~ 168 (175)
+..-+++
T Consensus 87 Gk~~~~~ 93 (117)
T cd02959 87 GDVHPEI 93 (117)
T ss_pred CCCchhh
Confidence 6655543
No 50
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.59 E-value=7.8e-15 Score=106.35 Aligned_cols=82 Identities=17% Similarity=0.092 Sum_probs=67.1
Q ss_pred ChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCCh----------HHHHHHcC--
Q 030523 82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS----------KDLVKRGN-- 149 (175)
Q Consensus 82 s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~----------~~l~~~~~-- 149 (175)
+.+++.+.+ ++++.++|+|+++|||+|+.+.|.+++++++ .++.++.||+|.++ .++.++|+
T Consensus 12 t~~~~~~~i----~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~--~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~ 85 (122)
T TIGR01295 12 TVVRALEAL----DKKETATFFIGRKTCPYCRKFSGTLSGVVAQ--TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIP 85 (122)
T ss_pred CHHHHHHHH----HcCCcEEEEEECCCChhHHHHhHHHHHHHHh--cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCc
Confidence 456899988 6889999999999999999999999999988 45789999998543 13556665
Q ss_pred --CCccCeEEEEeecccceecc
Q 030523 150 --ISKMPTIQVIFFFPFYFTFL 169 (175)
Q Consensus 150 --I~~~Pt~~~f~~~~~~~~~~ 169 (175)
|.++||+++|+.|..=+++.
T Consensus 86 ~~i~~~PT~v~~k~Gk~v~~~~ 107 (122)
T TIGR01295 86 TSFMGTPTFVHITDGKQVSVRC 107 (122)
T ss_pred ccCCCCCEEEEEeCCeEEEEEe
Confidence 55699999999997766653
No 51
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.59 E-value=5.9e-15 Score=127.89 Aligned_cols=86 Identities=16% Similarity=0.292 Sum_probs=71.6
Q ss_pred eeEEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCC-CeEEEEEEccCChHHHH-HHcCCCcc
Q 030523 76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLV-KRGNISKM 153 (175)
Q Consensus 76 ~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~l~-~~~~I~~~ 153 (175)
.+.+++ .++|++.+... +.++++||+|||+||++|+.|.|.|+++++++++ ++.|++||+|.+...++ ++|+|.++
T Consensus 352 ~Vv~L~-~~nf~~~v~~~-~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~ 429 (463)
T TIGR00424 352 NVVSLS-RPGIENLLKLE-ERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSF 429 (463)
T ss_pred CeEECC-HHHHHHHHhhh-cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCcc
Confidence 455554 45899998422 5899999999999999999999999999999865 48999999998643244 78999999
Q ss_pred CeEEEEeecc
Q 030523 154 PTIQVIFFFP 163 (175)
Q Consensus 154 Pt~~~f~~~~ 163 (175)
||+++|+.+.
T Consensus 430 PTii~Fk~g~ 439 (463)
T TIGR00424 430 PTILFFPKHS 439 (463)
T ss_pred ceEEEEECCC
Confidence 9999999874
No 52
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.57 E-value=1e-14 Score=105.36 Aligned_cols=75 Identities=17% Similarity=0.284 Sum_probs=61.9
Q ss_pred hhHHHHHHHhhcCC-CcEEEEEEcCCChhhhhchHHHH---HHHHHhCCCeEEEEEEccCC------------hHHHHHH
Q 030523 84 DHLDQILLRAQELS-QPILIDWMASWCRKCIYLKPKLE---KLAAEFDTKLKFYYVDVNKV------------SKDLVKR 147 (175)
Q Consensus 84 ~~f~~~l~~~~~~~-k~vlV~F~a~wC~~C~~~~p~l~---~l~~~~~~~v~~~~vd~d~~------------~~~l~~~ 147 (175)
++++++. +++ ++++|+||++||++|+.+.|.+. ++.+.+++++.++.+|++.. ..+++.+
T Consensus 4 ~~~~~a~----~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~ 79 (125)
T cd02951 4 EDLAEAA----ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARK 79 (125)
T ss_pred HHHHHHH----HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHH
Confidence 4555555 678 99999999999999999999884 56666656789999999875 2348999
Q ss_pred cCCCccCeEEEEeec
Q 030523 148 GNISKMPTIQVIFFF 162 (175)
Q Consensus 148 ~~I~~~Pt~~~f~~~ 162 (175)
|+|.++||+++|.-.
T Consensus 80 ~~v~~~Pt~~~~~~~ 94 (125)
T cd02951 80 YRVRFTPTVIFLDPE 94 (125)
T ss_pred cCCccccEEEEEcCC
Confidence 999999999999764
No 53
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.57 E-value=2.2e-14 Score=96.09 Aligned_cols=78 Identities=27% Similarity=0.506 Sum_probs=68.6
Q ss_pred hHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEEEEeeccc
Q 030523 85 HLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQVIFFFPF 164 (175)
Q Consensus 85 ~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~f~~~~~ 164 (175)
+|++.+ ..+++++|+||++||++|+.+.|.++++++. .+++.++.+|++.+++ ++++|++.++||+++|..+..
T Consensus 2 ~~~~~~----~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~-~~~~~~v~~~P~~~~~~~g~~ 75 (93)
T cd02947 2 EFEELI----KSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPE-LAEEYGVRSIPTFLFFKNGKE 75 (93)
T ss_pred chHHHH----hcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChh-HHHhcCcccccEEEEEECCEE
Confidence 567777 4569999999999999999999999999988 4889999999999886 999999999999999988774
Q ss_pred ceec
Q 030523 165 YFTF 168 (175)
Q Consensus 165 ~~~~ 168 (175)
-+.+
T Consensus 76 ~~~~ 79 (93)
T cd02947 76 VDRV 79 (93)
T ss_pred EEEE
Confidence 4443
No 54
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=7.5e-15 Score=127.12 Aligned_cols=83 Identities=23% Similarity=0.449 Sum_probs=74.4
Q ss_pred eeEEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhC---CCeEEEEEEccCChHHHHHHcCCCc
Q 030523 76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD---TKLKFYYVDVNKVSKDLVKRGNISK 152 (175)
Q Consensus 76 ~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~---~~v~~~~vd~d~~~~~l~~~~~I~~ 152 (175)
.+.+++ .++|+..| ..+..++|.||||||++|+.+.|.+++.+..+. +.+.+++||++++.+ +|.+|+|++
T Consensus 26 ~Vl~Lt-~dnf~~~i----~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~-~~~~y~v~g 99 (493)
T KOG0190|consen 26 DVLVLT-KDNFKETI----NGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESD-LASKYEVRG 99 (493)
T ss_pred ceEEEe-cccHHHHh----ccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhh-hHhhhcCCC
Confidence 344444 56999999 789999999999999999999999999999874 379999999999975 999999999
Q ss_pred cCeEEEEeeccc
Q 030523 153 MPTIQVIFFFPF 164 (175)
Q Consensus 153 ~Pt~~~f~~~~~ 164 (175)
+||+.+|.+|.+
T Consensus 100 yPTlkiFrnG~~ 111 (493)
T KOG0190|consen 100 YPTLKIFRNGRS 111 (493)
T ss_pred CCeEEEEecCCc
Confidence 999999999987
No 55
>PTZ00062 glutaredoxin; Provisional
Probab=99.56 E-value=1.3e-14 Score=113.77 Aligned_cols=79 Identities=11% Similarity=0.098 Sum_probs=70.7
Q ss_pred CChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEEEEe
Q 030523 81 NDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQVIF 160 (175)
Q Consensus 81 ~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~f~ 160 (175)
.+.+++++.+. .+.+.++++|+|+||++|+.|.|.+.++++++ +++.|++||.+ |+|.++|||++|.
T Consensus 4 ~~~ee~~~~i~---~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~-~~~~F~~V~~d---------~~V~~vPtfv~~~ 70 (204)
T PTZ00062 4 IKKEEKDKLIE---SNTGKLVLYVKSSKEPEYEQLMDVCNALVEDF-PSLEFYVVNLA---------DANNEYGVFEFYQ 70 (204)
T ss_pred CCHHHHHHHHh---cCCCcEEEEEeCCCCcchHHHHHHHHHHHHHC-CCcEEEEEccc---------cCcccceEEEEEE
Confidence 45778999983 22488999999999999999999999999999 88999999987 8999999999999
Q ss_pred ecccceeccccc
Q 030523 161 FFPFYFTFLFAK 172 (175)
Q Consensus 161 ~~~~~~~~~~~~ 172 (175)
.++.-+|+-.++
T Consensus 71 ~g~~i~r~~G~~ 82 (204)
T PTZ00062 71 NSQLINSLEGCN 82 (204)
T ss_pred CCEEEeeeeCCC
Confidence 999999987765
No 56
>PLN02309 5'-adenylylsulfate reductase
Probab=99.55 E-value=2.2e-14 Score=124.27 Aligned_cols=85 Identities=18% Similarity=0.334 Sum_probs=71.4
Q ss_pred eeEEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCC-CeEEEEEEcc-CChHHHHH-HcCCCc
Q 030523 76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN-KVSKDLVK-RGNISK 152 (175)
Q Consensus 76 ~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d-~~~~~l~~-~~~I~~ 152 (175)
.+.+++ .++|++++... +.++++||+||||||++|+.|.|.++++++++.+ ++.|+++|++ .+.+ +++ +|+|.+
T Consensus 346 ~Vv~Lt-~~nfe~ll~~~-~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~-la~~~~~I~~ 422 (457)
T PLN02309 346 NVVALS-RAGIENLLKLE-NRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKE-FAKQELQLGS 422 (457)
T ss_pred CcEECC-HHHHHHHHHhh-cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchH-HHHhhCCCce
Confidence 345544 46899888543 5899999999999999999999999999999854 5999999999 5554 775 699999
Q ss_pred cCeEEEEeecc
Q 030523 153 MPTIQVIFFFP 163 (175)
Q Consensus 153 ~Pt~~~f~~~~ 163 (175)
+||+++|..+.
T Consensus 423 ~PTil~f~~g~ 433 (457)
T PLN02309 423 FPTILLFPKNS 433 (457)
T ss_pred eeEEEEEeCCC
Confidence 99999998765
No 57
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.51 E-value=8.2e-14 Score=119.88 Aligned_cols=78 Identities=26% Similarity=0.491 Sum_probs=70.2
Q ss_pred ChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhC---CCeEEEEEEccCChHHHHHHcCCCccCeEEE
Q 030523 82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD---TKLKFYYVDVNKVSKDLVKRGNISKMPTIQV 158 (175)
Q Consensus 82 s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~---~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~ 158 (175)
+.++|+.++ +++++++|+|||+||++|+.+.|.+.++++.+. +++.++.||++.+++ ++++|+|.++||+++
T Consensus 7 ~~~~~~~~i----~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~-l~~~~~i~~~Pt~~~ 81 (462)
T TIGR01130 7 TKDNFDDFI----KSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKD-LAQKYGVSGYPTLKI 81 (462)
T ss_pred CHHHHHHHH----hcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHH-HHHhCCCccccEEEE
Confidence 456899999 678899999999999999999999999988774 349999999999986 999999999999999
Q ss_pred Eeeccc
Q 030523 159 IFFFPF 164 (175)
Q Consensus 159 f~~~~~ 164 (175)
|..+..
T Consensus 82 ~~~g~~ 87 (462)
T TIGR01130 82 FRNGED 87 (462)
T ss_pred EeCCcc
Confidence 997765
No 58
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.50 E-value=1.3e-13 Score=95.86 Aligned_cols=70 Identities=20% Similarity=0.341 Sum_probs=65.3
Q ss_pred CCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCC--ccCeEEEEee--cccce
Q 030523 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS--KMPTIQVIFF--FPFYF 166 (175)
Q Consensus 96 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~--~~Pt~~~f~~--~~~~~ 166 (175)
.++++++.|+++||++|+.+.|.++++++++++++.|+.||++++++ +++.|+|. ++|+++++.. +..|.
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~-~~~~~~i~~~~~P~~~~~~~~~~~k~~ 84 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGR-HLEYFGLKEEDLPVIAIINLSDGKKYL 84 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHH-HHHHcCCChhhCCEEEEEecccccccC
Confidence 47899999999999999999999999999998899999999999987 99999999 9999999999 66664
No 59
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.49 E-value=1.8e-13 Score=122.10 Aligned_cols=86 Identities=23% Similarity=0.416 Sum_probs=73.9
Q ss_pred ceeeEEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHH---HHHHHHhCCCeEEEEEEccCCh---HHHHHH
Q 030523 74 SVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNKVS---KDLVKR 147 (175)
Q Consensus 74 ~~~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~---~~l~~~ 147 (175)
....+++.+.+++++.+.+++.++|+|+|+|||+||++|+.+++.+ .++.+++ +++.++++|++++. .+++++
T Consensus 451 ~~~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l-~~~~~v~vDvt~~~~~~~~l~~~ 529 (571)
T PRK00293 451 HLNFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQAL-ADTVLLQADVTANNAEDVALLKH 529 (571)
T ss_pred CCCceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHh-cCCEEEEEECCCCChhhHHHHHH
Confidence 3457888899999999988767889999999999999999999875 6777777 57999999998642 348999
Q ss_pred cCCCccCeEEEEe
Q 030523 148 GNISKMPTIQVIF 160 (175)
Q Consensus 148 ~~I~~~Pt~~~f~ 160 (175)
|+|.++||+++|.
T Consensus 530 ~~v~g~Pt~~~~~ 542 (571)
T PRK00293 530 YNVLGLPTILFFD 542 (571)
T ss_pred cCCCCCCEEEEEC
Confidence 9999999999985
No 60
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.49 E-value=8.2e-14 Score=99.95 Aligned_cols=73 Identities=12% Similarity=0.083 Sum_probs=61.2
Q ss_pred ChhhHHHHHHHhhcCCCcEEEEEEc--CCCh---hhhhchHHHHHHHHHhCCCeEEEEEEcc-----CChHHHHHHcCCC
Q 030523 82 DSDHLDQILLRAQELSQPILIDWMA--SWCR---KCIYLKPKLEKLAAEFDTKLKFYYVDVN-----KVSKDLVKRGNIS 151 (175)
Q Consensus 82 s~~~f~~~l~~~~~~~k~vlV~F~a--~wC~---~C~~~~p~l~~l~~~~~~~v~~~~vd~d-----~~~~~l~~~~~I~ 151 (175)
+.++|++.| .+++.+||.||| |||+ +|+.++|.+.+.+. .+.+++||++ ++.+ |+++|+|+
T Consensus 7 ~~~nF~~~v----~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~----~v~lakVd~~d~~~~~~~~-L~~~y~I~ 77 (116)
T cd03007 7 DTVTFYKVI----PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD----DLLVAEVGIKDYGEKLNME-LGERYKLD 77 (116)
T ss_pred ChhhHHHHH----hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC----ceEEEEEecccccchhhHH-HHHHhCCC
Confidence 456999999 788999999999 9999 77777777766543 4899999995 4454 99999999
Q ss_pred --ccCeEEEEeecc
Q 030523 152 --KMPTIQVIFFFP 163 (175)
Q Consensus 152 --~~Pt~~~f~~~~ 163 (175)
++||+++|..+.
T Consensus 78 ~~gyPTl~lF~~g~ 91 (116)
T cd03007 78 KESYPVIYLFHGGD 91 (116)
T ss_pred cCCCCEEEEEeCCC
Confidence 999999999873
No 61
>PTZ00102 disulphide isomerase; Provisional
Probab=99.48 E-value=1.9e-13 Score=118.75 Aligned_cols=82 Identities=20% Similarity=0.380 Sum_probs=71.5
Q ss_pred eEEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhC---CCeEEEEEEccCChHHHHHHcCCCcc
Q 030523 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD---TKLKFYYVDVNKVSKDLVKRGNISKM 153 (175)
Q Consensus 77 ~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~---~~v~~~~vd~d~~~~~l~~~~~I~~~ 153 (175)
+..+ +.++|+..+ +++++++|+|||+||++|+.+.|.++++++.+. +++.+++||++.+.+ ++++|+|.++
T Consensus 34 v~~l-~~~~f~~~i----~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~-l~~~~~i~~~ 107 (477)
T PTZ00102 34 VTVL-TDSTFDKFI----TENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEME-LAQEFGVRGY 107 (477)
T ss_pred cEEc-chhhHHHHH----hcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHH-HHHhcCCCcc
Confidence 4444 456899998 677899999999999999999999999987763 469999999999997 9999999999
Q ss_pred CeEEEEeeccc
Q 030523 154 PTIQVIFFFPF 164 (175)
Q Consensus 154 Pt~~~f~~~~~ 164 (175)
||+++|..+..
T Consensus 108 Pt~~~~~~g~~ 118 (477)
T PTZ00102 108 PTIKFFNKGNP 118 (477)
T ss_pred cEEEEEECCce
Confidence 99999987754
No 62
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.45 E-value=3.7e-13 Score=89.79 Aligned_cols=58 Identities=19% Similarity=0.298 Sum_probs=53.5
Q ss_pred EEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEEE
Q 030523 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQV 158 (175)
Q Consensus 100 vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~ 158 (175)
.+..||++||++|+.+.|.+++++++++.++.+++||++++++ ++++|+|.++||+++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~-~~~~~~v~~vPt~~~ 59 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQ-KAMEYGIMAVPAIVI 59 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHH-HHHHcCCccCCEEEE
Confidence 3678999999999999999999999987779999999999987 899999999999985
No 63
>PTZ00102 disulphide isomerase; Provisional
Probab=99.45 E-value=3.3e-13 Score=117.20 Aligned_cols=82 Identities=16% Similarity=0.360 Sum_probs=70.9
Q ss_pred eEEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCC--CeEEEEEEccCChHHHHHHcCCCccC
Q 030523 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT--KLKFYYVDVNKVSKDLVKRGNISKMP 154 (175)
Q Consensus 77 ~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~~~l~~~~~I~~~P 154 (175)
+..+. .++|++.+. +++++++|+|||+||++|+.+.|.++++++.++. .+.++++|++.+.. .+++++|+++|
T Consensus 359 v~~l~-~~~f~~~v~---~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~-~~~~~~v~~~P 433 (477)
T PTZ00102 359 VKVVV-GNTFEEIVF---KSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANET-PLEEFSWSAFP 433 (477)
T ss_pred eEEec-ccchHHHHh---cCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCcc-chhcCCCcccC
Confidence 44444 468888864 6789999999999999999999999999988753 58999999999886 78999999999
Q ss_pred eEEEEeecc
Q 030523 155 TIQVIFFFP 163 (175)
Q Consensus 155 t~~~f~~~~ 163 (175)
|+++|..+.
T Consensus 434 t~~~~~~~~ 442 (477)
T PTZ00102 434 TILFVKAGE 442 (477)
T ss_pred eEEEEECCC
Confidence 999998664
No 64
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.45 E-value=5.1e-13 Score=97.13 Aligned_cols=82 Identities=16% Similarity=0.186 Sum_probs=62.0
Q ss_pred hhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHH---HHHHHHhCCCeEEEEEEccCChHHHHH--------HcCCCc
Q 030523 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNKVSKDLVK--------RGNISK 152 (175)
Q Consensus 84 ~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~~~l~~--------~~~I~~ 152 (175)
+.++.+. +++|+|+|+|+|+||++|+.|.+.. .++++.+..++.++++|+++.++ +++ .|++.+
T Consensus 6 eal~~Ak----~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~-~~~~~~~~~~~~~~~~G 80 (124)
T cd02955 6 EAFEKAR----REDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPD-VDKIYMNAAQAMTGQGG 80 (124)
T ss_pred HHHHHHH----HcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcH-HHHHHHHHHHHhcCCCC
Confidence 3444444 7999999999999999999998743 35666655679999999998775 544 368999
Q ss_pred cCeEEEEeecccceecccccc
Q 030523 153 MPTIQVIFFFPFYFTFLFAKN 173 (175)
Q Consensus 153 ~Pt~~~f~~~~~~~~~~~~~~ 173 (175)
+||++++- +.|+.+++.+
T Consensus 81 ~Pt~vfl~---~~G~~~~~~~ 98 (124)
T cd02955 81 WPLNVFLT---PDLKPFFGGT 98 (124)
T ss_pred CCEEEEEC---CCCCEEeeee
Confidence 99999873 3466555543
No 65
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=2.3e-13 Score=117.95 Aligned_cols=80 Identities=21% Similarity=0.430 Sum_probs=67.8
Q ss_pred eEEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCC--CeEEEEEEccCChHHHHHHcCCCccC
Q 030523 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT--KLKFYYVDVNKVSKDLVKRGNISKMP 154 (175)
Q Consensus 77 ~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~~~l~~~~~I~~~P 154 (175)
++.+. .++|++++. +.++.|||.||||||+||+++.|.+++|++.+++ ++.++++|++.|.- ....+.++|
T Consensus 368 VkvvV-gknfd~iv~---de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~---~~~~~~~fP 440 (493)
T KOG0190|consen 368 VKVVV-GKNFDDIVL---DEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDV---PSLKVDGFP 440 (493)
T ss_pred eEEEe-ecCHHHHhh---ccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccC---ccccccccc
Confidence 44444 458999987 7899999999999999999999999999999964 79999999998752 345788899
Q ss_pred eEEEEeecc
Q 030523 155 TIQVIFFFP 163 (175)
Q Consensus 155 t~~~f~~~~ 163 (175)
||.+|.-+.
T Consensus 441 TI~~~pag~ 449 (493)
T KOG0190|consen 441 TILFFPAGH 449 (493)
T ss_pred eEEEecCCC
Confidence 999998665
No 66
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.42 E-value=6.6e-13 Score=85.69 Aligned_cols=56 Identities=14% Similarity=0.255 Sum_probs=51.5
Q ss_pred EEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEEE
Q 030523 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQV 158 (175)
Q Consensus 101 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~ 158 (175)
++.|+++||++|+.+.+.++++++.. +++.+..+|++++++ ++++++|.++||+++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~-~~i~~~~id~~~~~~-l~~~~~i~~vPti~i 58 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALN-PNISAEMIDAAEFPD-LADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhC-CceEEEEEEcccCHh-HHHHcCCcccCEEEE
Confidence 67899999999999999999998776 789999999999986 999999999999865
No 67
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.40 E-value=2.7e-13 Score=110.45 Aligned_cols=79 Identities=20% Similarity=0.360 Sum_probs=67.4
Q ss_pred hhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhC---CCeEEEEEEccCChHHHHHHcCCCccCeEEEEe
Q 030523 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD---TKLKFYYVDVNKVSKDLVKRGNISKMPTIQVIF 160 (175)
Q Consensus 84 ~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~---~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~f~ 160 (175)
+++++...+. ..+..|+|+||||||++|+.+.|+|.++.-+++ --+++.++|++..+. ++.+++|+++||+.+|+
T Consensus 31 eDLddkFkdn-kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~a-iAnefgiqGYPTIk~~k 108 (468)
T KOG4277|consen 31 EDLDDKFKDN-KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPA-IANEFGIQGYPTIKFFK 108 (468)
T ss_pred hhhhHHhhhc-ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchh-hHhhhccCCCceEEEec
Confidence 4555555554 678899999999999999999999999987764 258999999999997 99999999999999998
Q ss_pred eccc
Q 030523 161 FFPF 164 (175)
Q Consensus 161 ~~~~ 164 (175)
..--
T Consensus 109 gd~a 112 (468)
T KOG4277|consen 109 GDHA 112 (468)
T ss_pred CCee
Confidence 6543
No 68
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.39 E-value=2.3e-12 Score=88.37 Aligned_cols=64 Identities=28% Similarity=0.659 Sum_probs=53.9
Q ss_pred CCcEEEEEEcCCChhhhhchHHHHHHHHHhC--CCeEEEEEEccCChH------------------------HHHHHcCC
Q 030523 97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFD--TKLKFYYVDVNKVSK------------------------DLVKRGNI 150 (175)
Q Consensus 97 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~d~~~~------------------------~l~~~~~I 150 (175)
+|+++|+|||+||++|+...|.+.++.++++ +++.++.|+.|+..+ .+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 5899999999999999999999999999997 689999999976431 47889999
Q ss_pred CccCeEEEEe
Q 030523 151 SKMPTIQVIF 160 (175)
Q Consensus 151 ~~~Pt~~~f~ 160 (175)
.++|+++++-
T Consensus 81 ~~iP~~~lld 90 (95)
T PF13905_consen 81 NGIPTLVLLD 90 (95)
T ss_dssp TSSSEEEEEE
T ss_pred CcCCEEEEEC
Confidence 9999998864
No 69
>PHA02125 thioredoxin-like protein
Probab=99.37 E-value=1.4e-12 Score=86.51 Aligned_cols=50 Identities=26% Similarity=0.584 Sum_probs=45.0
Q ss_pred EEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEE
Q 030523 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQ 157 (175)
Q Consensus 101 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~ 157 (175)
+++||++||++|+.+.|.++++. +.+++||.+++.+ ++++|+|.++||++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~~-l~~~~~v~~~PT~~ 51 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGVE-LTAKHHIRSLPTLV 51 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCHH-HHHHcCCceeCeEE
Confidence 78999999999999999997652 4688999999886 99999999999998
No 70
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.37 E-value=2.9e-12 Score=95.57 Aligned_cols=74 Identities=20% Similarity=0.313 Sum_probs=58.4
Q ss_pred cCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCC--------CeEEEEEEccCChH------------------------
Q 030523 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT--------KLKFYYVDVNKVSK------------------------ 142 (175)
Q Consensus 95 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~--------~v~~~~vd~d~~~~------------------------ 142 (175)
-++++++|+|||+||++|+.+.|.+.++.+++++ ++.++.|+.|...+
T Consensus 23 ~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~ 102 (146)
T cd03008 23 LENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRR 102 (146)
T ss_pred hCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHH
Confidence 3689999999999999999999999998876532 58999998875321
Q ss_pred HHHHHcCCCccCeEEEEeecccceecccc
Q 030523 143 DLVKRGNISKMPTIQVIFFFPFYFTFLFA 171 (175)
Q Consensus 143 ~l~~~~~I~~~Pt~~~f~~~~~~~~~~~~ 171 (175)
.++++|+|.++||.+++- ..|+.+.+
T Consensus 103 ~l~~~y~v~~iPt~vlId---~~G~Vv~~ 128 (146)
T cd03008 103 ELEAQFSVEELPTVVVLK---PDGDVLAA 128 (146)
T ss_pred HHHHHcCCCCCCEEEEEC---CCCcEEee
Confidence 367889999999998764 24665543
No 71
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.33 E-value=2.6e-12 Score=86.45 Aligned_cols=74 Identities=20% Similarity=0.462 Sum_probs=58.1
Q ss_pred hhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHH---HHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEEEE
Q 030523 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQVI 159 (175)
Q Consensus 84 ~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~f 159 (175)
.++++.+..+++++++++|+|+++||++|+.|...+ .++.+.+..++.++++|.+...... + +...++|+++++
T Consensus 4 ~d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~-~-~~~~~~P~~~~l 80 (82)
T PF13899_consen 4 SDYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNA-Q-FDRQGYPTFFFL 80 (82)
T ss_dssp SSHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHH-H-HHHCSSSEEEEE
T ss_pred hhHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhH-H-hCCccCCEEEEe
Confidence 367888888889999999999999999999999877 4555545567999999998765422 2 222669999986
No 72
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.33 E-value=4.8e-12 Score=84.22 Aligned_cols=54 Identities=17% Similarity=0.302 Sum_probs=47.0
Q ss_pred EEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEEE
Q 030523 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQV 158 (175)
Q Consensus 101 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~ 158 (175)
.|.||++||++|+.+.|.+++++++++.++.+++|| +.+ .+.+|+|.++||+++
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~-~a~~~~v~~vPti~i 55 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMN-EILEAGVTATPGVAV 55 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHH-HHHHcCCCcCCEEEE
Confidence 378999999999999999999999997678887777 343 477899999999998
No 73
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.32 E-value=7.6e-12 Score=98.76 Aligned_cols=65 Identities=15% Similarity=0.164 Sum_probs=56.9
Q ss_pred CCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEEEEeecc
Q 030523 97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQVIFFFP 163 (175)
Q Consensus 97 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~f~~~~ 163 (175)
+..+++.||++||++|+.+.|.+++++.+. +++.+.++|.+.+++ ++++|+|.++||++++..+.
T Consensus 133 ~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~-~~i~~~~vD~~~~~~-~~~~~~V~~vPtl~i~~~~~ 197 (215)
T TIGR02187 133 EPVRIEVFVTPTCPYCPYAVLMAHKFALAN-DKILGEMIEANENPD-LAEKYGVMSVPKIVINKGVE 197 (215)
T ss_pred CCcEEEEEECCCCCCcHHHHHHHHHHHHhc-CceEEEEEeCCCCHH-HHHHhCCccCCEEEEecCCE
Confidence 344455599999999999999999999886 789999999999997 99999999999999987654
No 74
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.32 E-value=3.3e-12 Score=109.97 Aligned_cols=81 Identities=21% Similarity=0.447 Sum_probs=68.7
Q ss_pred eEEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCC---CeEEEEEEccCChHHHHHHcCCCcc
Q 030523 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT---KLKFYYVDVNKVSKDLVKRGNISKM 153 (175)
Q Consensus 77 ~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~~~~~l~~~~~I~~~ 153 (175)
+..+. .++|++.+. +.+++++|+||++||++|+.+.|.++++++.++. ++.|+++|++.+. +.. ++|.++
T Consensus 348 v~~l~-~~~f~~~v~---~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~--~~~-~~i~~~ 420 (462)
T TIGR01130 348 VKVLV-GKNFDEIVL---DETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND--VPP-FEVEGF 420 (462)
T ss_pred cEEee-CcCHHHHhc---cCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc--cCC-CCcccc
Confidence 34443 568888875 5789999999999999999999999999999966 7999999999875 344 999999
Q ss_pred CeEEEEeeccc
Q 030523 154 PTIQVIFFFPF 164 (175)
Q Consensus 154 Pt~~~f~~~~~ 164 (175)
||+++|.-+..
T Consensus 421 Pt~~~~~~~~~ 431 (462)
T TIGR01130 421 PTIKFVPAGKK 431 (462)
T ss_pred CEEEEEeCCCC
Confidence 99999987753
No 75
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.31 E-value=1.1e-11 Score=90.12 Aligned_cols=65 Identities=18% Similarity=0.439 Sum_probs=54.5
Q ss_pred CCCcEEEEEEcCCChhhhhchHHHHHHHHHhC---CCeEEEEEEccCCh-----------------------HHHHHHcC
Q 030523 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFD---TKLKFYYVDVNKVS-----------------------KDLVKRGN 149 (175)
Q Consensus 96 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~---~~v~~~~vd~d~~~-----------------------~~l~~~~~ 149 (175)
.++++||+||++||++|+.+.|.+.++.+++. +++.++.|++|... ..+++.|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 67899999999999999999999999988874 25788888877542 24778999
Q ss_pred CCccCeEEEEe
Q 030523 150 ISKMPTIQVIF 160 (175)
Q Consensus 150 I~~~Pt~~~f~ 160 (175)
|.++|+++++-
T Consensus 97 v~~~P~~~lid 107 (131)
T cd03009 97 IEGIPTLIILD 107 (131)
T ss_pred CCCCCEEEEEC
Confidence 99999988874
No 76
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.31 E-value=1e-11 Score=90.53 Aligned_cols=66 Identities=21% Similarity=0.436 Sum_probs=55.3
Q ss_pred cCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCC---CeEEEEEEccCCh------------------------HHHHHH
Q 030523 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT---KLKFYYVDVNKVS------------------------KDLVKR 147 (175)
Q Consensus 95 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~~~------------------------~~l~~~ 147 (175)
-.+++++|+||++||++|+.+.|.++++.+++++ ++.++.|++|... ..+++.
T Consensus 15 ~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 94 (132)
T cd02964 15 LEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQ 94 (132)
T ss_pred hCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHH
Confidence 3689999999999999999999999999888754 5888888887642 235677
Q ss_pred cCCCccCeEEEEe
Q 030523 148 GNISKMPTIQVIF 160 (175)
Q Consensus 148 ~~I~~~Pt~~~f~ 160 (175)
|+|.++|+++++.
T Consensus 95 ~~v~~iPt~~lid 107 (132)
T cd02964 95 FKVEGIPTLVVLK 107 (132)
T ss_pred cCCCCCCEEEEEC
Confidence 9999999998884
No 77
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.29 E-value=6.2e-12 Score=102.45 Aligned_cols=78 Identities=31% Similarity=0.548 Sum_probs=70.4
Q ss_pred hhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhC-----CCeEEEEEEccCChHHHHHHcCCCccCeEE
Q 030523 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD-----TKLKFYYVDVNKVSKDLVKRGNISKMPTIQ 157 (175)
Q Consensus 83 ~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~-----~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~ 157 (175)
.++++.++ .+...|+|.|||+||+..+.++|.+++.+++++ +++.+.+|||+++.. ++.+|.|..+||+.
T Consensus 3 ~~N~~~il----~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~-ia~ky~I~KyPTlK 77 (375)
T KOG0912|consen 3 SENIDSIL----DSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDD-IADKYHINKYPTLK 77 (375)
T ss_pred cccHHHhh----ccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhH-HhhhhccccCceee
Confidence 35788888 789999999999999999999999999988763 579999999999987 99999999999999
Q ss_pred EEeecccc
Q 030523 158 VIFFFPFY 165 (175)
Q Consensus 158 ~f~~~~~~ 165 (175)
+|.+|-|-
T Consensus 78 vfrnG~~~ 85 (375)
T KOG0912|consen 78 VFRNGEMM 85 (375)
T ss_pred eeeccchh
Confidence 99988763
No 78
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.29 E-value=1.2e-11 Score=97.56 Aligned_cols=68 Identities=16% Similarity=0.173 Sum_probs=55.6
Q ss_pred CCCcEEEEEEc---CCChhhhhchHHHHHHHHHhCCCe--EEEEEEccCChHHHHHHcCCCccCeEEEEeecccc
Q 030523 96 LSQPILIDWMA---SWCRKCIYLKPKLEKLAAEFDTKL--KFYYVDVNKVSKDLVKRGNISKMPTIQVIFFFPFY 165 (175)
Q Consensus 96 ~~k~vlV~F~a---~wC~~C~~~~p~l~~l~~~~~~~v--~~~~vd~d~~~~~l~~~~~I~~~Pt~~~f~~~~~~ 165 (175)
.+...++.|++ +||++|+.+.|.++++++++ +++ .++.+|.+++++ ++++|+|.++||+++|..+..-
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~-~~~~i~~v~vd~~~~~~-l~~~~~V~~~Pt~~~f~~g~~~ 90 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVS-PKLKLEIYDFDTPEDKE-EAEKYGVERVPTTIILEEGKDG 90 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhC-CCceEEEEecCCcccHH-HHHHcCCCccCEEEEEeCCeee
Confidence 34444666877 99999999999999999998 554 456666668886 9999999999999999987654
No 79
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.3e-11 Score=105.25 Aligned_cols=67 Identities=30% Similarity=0.519 Sum_probs=64.2
Q ss_pred cCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEEEEeec
Q 030523 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQVIFFF 162 (175)
Q Consensus 95 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~f~~~ 162 (175)
..+++++|+||+|||++|+.+.|.+.+++..+++.+.+..||++.+.+ ++++|+|.++||+.+|.-+
T Consensus 45 ~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~-~~~~y~i~gfPtl~~f~~~ 111 (383)
T KOG0191|consen 45 KDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKD-LCEKYGIQGFPTLKVFRPG 111 (383)
T ss_pred ccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHH-HHHhcCCccCcEEEEEcCC
Confidence 689999999999999999999999999999998889999999999997 9999999999999999877
No 80
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.21 E-value=4.4e-11 Score=97.75 Aligned_cols=65 Identities=15% Similarity=0.202 Sum_probs=56.0
Q ss_pred cCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCCh----------HHHHHHcCCCccCeEEEEee
Q 030523 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS----------KDLVKRGNISKMPTIQVIFF 161 (175)
Q Consensus 95 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~----------~~l~~~~~I~~~Pt~~~f~~ 161 (175)
-.++++||+||++||++|+.+.|.+++++++++ +.++.|++|..+ ..++++|+|.++||++++.-
T Consensus 164 l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~ 238 (271)
T TIGR02740 164 LAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADP 238 (271)
T ss_pred hcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEEC
Confidence 368999999999999999999999999999983 677777776521 23789999999999999986
No 81
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.20 E-value=1.3e-11 Score=87.04 Aligned_cols=66 Identities=23% Similarity=0.467 Sum_probs=50.8
Q ss_pred cCCCcEEEEEEcCCChhhhhchHHHHHH---HHHhCCCeEEEEEEccCCh-------------------HHHHHHcCCCc
Q 030523 95 ELSQPILIDWMASWCRKCIYLKPKLEKL---AAEFDTKLKFYYVDVNKVS-------------------KDLVKRGNISK 152 (175)
Q Consensus 95 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l---~~~~~~~v~~~~vd~d~~~-------------------~~l~~~~~I~~ 152 (175)
.++++++|+|+++||++|+.+.+.+.+. ...++.++.++.++++... .+++++|+|.+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 5789999999999999999999999854 4444457899999987532 24889999999
Q ss_pred cCeEEEEe
Q 030523 153 MPTIQVIF 160 (175)
Q Consensus 153 ~Pt~~~f~ 160 (175)
+||++++-
T Consensus 83 tPt~~~~d 90 (112)
T PF13098_consen 83 TPTIVFLD 90 (112)
T ss_dssp SSEEEECT
T ss_pred cCEEEEEc
Confidence 99999974
No 82
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.19 E-value=1.2e-10 Score=79.93 Aligned_cols=61 Identities=15% Similarity=0.195 Sum_probs=55.3
Q ss_pred CCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEEE
Q 030523 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQV 158 (175)
Q Consensus 96 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~ 158 (175)
.+..-+..|+++||++|....+.++++++.+ +++.+..+|+++.++ ++++|+|.++||+++
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~-~~i~~~~vd~~~~~e-~a~~~~V~~vPt~vi 71 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLN-PNIEHEMIDGALFQD-EVEERGIMSVPAIFL 71 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHC-CCceEEEEEhHhCHH-HHHHcCCccCCEEEE
Confidence 4556788899999999999999999999888 789999999999986 899999999999964
No 83
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.19 E-value=1.1e-11 Score=108.18 Aligned_cols=86 Identities=19% Similarity=0.329 Sum_probs=69.6
Q ss_pred CChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhC---CCeEEEEEEccC-ChHHHHHHcCCCccCeE
Q 030523 81 NDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD---TKLKFYYVDVNK-VSKDLVKRGNISKMPTI 156 (175)
Q Consensus 81 ~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~---~~v~~~~vd~d~-~~~~l~~~~~I~~~Pt~ 156 (175)
.+.++|+.++.. +.+-.+|.||++|||+|++++|.++++++... +-+.++.|||.. .+..+|++++|+.+|++
T Consensus 44 Ld~~tf~~~v~~---~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptl 120 (606)
T KOG1731|consen 44 LDVDTFNAAVFG---SRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTL 120 (606)
T ss_pred eehhhhHHHhcc---cchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCcee
Confidence 456799999963 44688999999999999999999999999863 458999999944 23359999999999999
Q ss_pred EEEeec---ccceecc
Q 030523 157 QVIFFF---PFYFTFL 169 (175)
Q Consensus 157 ~~f~~~---~~~~~~~ 169 (175)
.+|.-. .++|+++
T Consensus 121 ryf~~~~~~~~~G~~~ 136 (606)
T KOG1731|consen 121 RYFPPDSQNKTDGSDV 136 (606)
T ss_pred eecCCccccCcCCCcc
Confidence 988766 2345544
No 84
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.19 E-value=5.2e-11 Score=89.57 Aligned_cols=64 Identities=16% Similarity=0.248 Sum_probs=49.9
Q ss_pred cCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCC------------hHHHHHHc---CCCccCeEEEE
Q 030523 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV------------SKDLVKRG---NISKMPTIQVI 159 (175)
Q Consensus 95 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~------------~~~l~~~~---~I~~~Pt~~~f 159 (175)
..++..+|+|||+||++|+.+.|.++++++++ ++.++.|++|.. .+.+.+.| ++.++||.+++
T Consensus 48 ~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~--~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LI 125 (153)
T TIGR02738 48 NQDDYALVFFYQSTCPYCHQFAPVLKRFSQQF--GLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLV 125 (153)
T ss_pred hcCCCEEEEEECCCChhHHHHHHHHHHHHHHc--CCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEE
Confidence 35667799999999999999999999999998 366777777643 22123445 88999999988
Q ss_pred e
Q 030523 160 F 160 (175)
Q Consensus 160 ~ 160 (175)
-
T Consensus 126 D 126 (153)
T TIGR02738 126 N 126 (153)
T ss_pred e
Confidence 3
No 85
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.18 E-value=8.7e-11 Score=85.84 Aligned_cols=75 Identities=13% Similarity=0.232 Sum_probs=53.8
Q ss_pred hhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHH---HHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEEEE
Q 030523 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQVI 159 (175)
Q Consensus 83 ~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~f 159 (175)
..++++.+..+++++|+++|+|+++||++|+.|...+ .++.+..+.++..+.++.+.....+. ..+ .++||++|+
T Consensus 9 ~~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~-~~g-~~vPtivFl 86 (130)
T cd02960 9 VQTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS-PDG-QYVPRIMFV 86 (130)
T ss_pred hhhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC-ccC-cccCeEEEE
Confidence 3478888888889999999999999999999999765 34444443456666777653311111 233 689999988
No 86
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.17 E-value=5.4e-11 Score=84.03 Aligned_cols=60 Identities=17% Similarity=0.356 Sum_probs=43.8
Q ss_pred CCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCCh---HHHHHHcCCCccCeE
Q 030523 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS---KDLVKRGNISKMPTI 156 (175)
Q Consensus 96 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~---~~l~~~~~I~~~Pt~ 156 (175)
.+++++|+||++||++|+.+.|.++++.+++.+++.++.+. +... ..+++++++..+|++
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~-~~~~~~~~~~~~~~~~~~~p~~ 82 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLAS-DGEKAEHQRFLKKHGLEAFPYV 82 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEe-CCCHHHHHHHHHHhCCCCCcEE
Confidence 37899999999999999999999999988886677777663 2211 124455555555544
No 87
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.15 E-value=2.5e-10 Score=81.31 Aligned_cols=77 Identities=14% Similarity=0.178 Sum_probs=63.2
Q ss_pred hHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHH---HHHHHHhCCCeEEEEEEccC-ChHHHHHHcCCCccCeEEEEe
Q 030523 85 HLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNK-VSKDLVKRGNISKMPTIQVIF 160 (175)
Q Consensus 85 ~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~-~~~~l~~~~~I~~~Pt~~~f~ 160 (175)
+|++++..+++++|+++|+|+++||++|+.|...+ +++.+.++.++.++.+|++. ....++..|++.++|+++++-
T Consensus 5 s~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~ 84 (114)
T cd02958 5 SFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIID 84 (114)
T ss_pred CHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEe
Confidence 67888888888999999999999999999998643 45555565678899999975 333589999999999999985
Q ss_pred e
Q 030523 161 F 161 (175)
Q Consensus 161 ~ 161 (175)
-
T Consensus 85 ~ 85 (114)
T cd02958 85 P 85 (114)
T ss_pred C
Confidence 3
No 88
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.15 E-value=1.8e-10 Score=83.13 Aligned_cols=66 Identities=21% Similarity=0.272 Sum_probs=51.6
Q ss_pred cCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEc-----------------------cCChHHHHHHcCCC
Q 030523 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV-----------------------NKVSKDLVKRGNIS 151 (175)
Q Consensus 95 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~-----------------------d~~~~~l~~~~~I~ 151 (175)
..+++++|+||++||++|+.+.|.++++.+++ ++.++.|+. |.... +++.|++.
T Consensus 23 ~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~--~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~v~ 99 (127)
T cd03010 23 LKGKPYLLNVWASWCAPCREEHPVLMALARQG--RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGR-VGIDLGVY 99 (127)
T ss_pred cCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc--CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcch-HHHhcCCC
Confidence 46789999999999999999999999998876 377777774 23333 78889999
Q ss_pred ccCeEEEE-eecc
Q 030523 152 KMPTIQVI-FFFP 163 (175)
Q Consensus 152 ~~Pt~~~f-~~~~ 163 (175)
++|+.+++ ..+.
T Consensus 100 ~~P~~~~ld~~G~ 112 (127)
T cd03010 100 GVPETFLIDGDGI 112 (127)
T ss_pred CCCeEEEECCCce
Confidence 99965444 3443
No 89
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.13 E-value=1.9e-10 Score=101.26 Aligned_cols=69 Identities=26% Similarity=0.359 Sum_probs=55.3
Q ss_pred cCCCcEEEEEEcCCChhhhhchHHHHHHHHHhC-CCeEEEEEEc----------------------------cCChHHHH
Q 030523 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDV----------------------------NKVSKDLV 145 (175)
Q Consensus 95 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~----------------------------d~~~~~l~ 145 (175)
.+++++||+|||+||++|+.+.|.++++.++++ +++.++.|.. |.+.. ++
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~-la 132 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGT-LA 132 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHH-HH
Confidence 478999999999999999999999999999885 3577766643 33343 88
Q ss_pred HHcCCCccCeEEEE-eeccc
Q 030523 146 KRGNISKMPTIQVI-FFFPF 164 (175)
Q Consensus 146 ~~~~I~~~Pt~~~f-~~~~~ 164 (175)
+.|+|.++||++++ ..+..
T Consensus 133 k~fgV~giPTt~IIDkdGkI 152 (521)
T PRK14018 133 QSLNISVYPSWAIIGKDGDV 152 (521)
T ss_pred HHcCCCCcCeEEEEcCCCeE
Confidence 99999999999666 44443
No 90
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.11 E-value=3.9e-10 Score=78.02 Aligned_cols=71 Identities=27% Similarity=0.413 Sum_probs=59.9
Q ss_pred CCCcEEEEEEcCCChhhhhchHHHHHHHHHhC-CCeEEEEEEccCC-----------------------hHHHHHHcCCC
Q 030523 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKV-----------------------SKDLVKRGNIS 151 (175)
Q Consensus 96 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~-----------------------~~~l~~~~~I~ 151 (175)
.+++++|+||++||++|+...+.+.++.++++ +++.++.|+++.. .. +.+.|++.
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 96 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGE-LAKAYGVR 96 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcch-HHHhcCcC
Confidence 47899999999999999999999999999985 5799999999885 43 88999999
Q ss_pred ccCeEEEEeecccceeccc
Q 030523 152 KMPTIQVIFFFPFYFTFLF 170 (175)
Q Consensus 152 ~~Pt~~~f~~~~~~~~~~~ 170 (175)
++|+++++ +.-|+.+.
T Consensus 97 ~~P~~~l~---d~~g~v~~ 112 (116)
T cd02966 97 GLPTTFLI---DRDGRIRA 112 (116)
T ss_pred ccceEEEE---CCCCcEEE
Confidence 99998765 44455543
No 91
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.08 E-value=4.1e-10 Score=99.01 Aligned_cols=80 Identities=25% Similarity=0.426 Sum_probs=65.1
Q ss_pred EEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHH---HHHHHhCCCeEEEEEEccCChH---HHHHHcCCC
Q 030523 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLE---KLAAEFDTKLKFYYVDVNKVSK---DLVKRGNIS 151 (175)
Q Consensus 78 ~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~---~l~~~~~~~v~~~~vd~d~~~~---~l~~~~~I~ 151 (175)
..+.+.+++++.+.++ .+|||+|+|||+||-.||.+++..- +...+. .++...++|++++.. ++.++|++.
T Consensus 457 q~~s~~~~L~~~la~~--~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~-~~~vlLqaDvT~~~p~~~~lLk~~~~~ 533 (569)
T COG4232 457 QPISPLAELDQALAEA--KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQAL-QDVVLLQADVTANDPAITALLKRLGVF 533 (569)
T ss_pred hccCCHHHHHHHHHhC--CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhc-CCeEEEEeeecCCCHHHHHHHHHcCCC
Confidence 6777777999999653 4469999999999999999998663 233334 789999999988642 477999999
Q ss_pred ccCeEEEEe
Q 030523 152 KMPTIQVIF 160 (175)
Q Consensus 152 ~~Pt~~~f~ 160 (175)
++|++++|-
T Consensus 534 G~P~~~ff~ 542 (569)
T COG4232 534 GVPTYLFFG 542 (569)
T ss_pred CCCEEEEEC
Confidence 999999986
No 92
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.07 E-value=5.3e-10 Score=86.28 Aligned_cols=62 Identities=19% Similarity=0.355 Sum_probs=48.6
Q ss_pred cCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChH----------------------HHHHHcCCCc
Q 030523 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK----------------------DLVKRGNISK 152 (175)
Q Consensus 95 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~----------------------~l~~~~~I~~ 152 (175)
..+++++|+||++||++|+.+.|.+.++.++ ++.++.|+.++..+ .+.+.|+|.+
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~ 142 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG 142 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCc
Confidence 3689999999999999999999999998653 58889998755432 1345788899
Q ss_pred cCeEEEE
Q 030523 153 MPTIQVI 159 (175)
Q Consensus 153 ~Pt~~~f 159 (175)
+|+.+++
T Consensus 143 ~P~t~vi 149 (185)
T PRK15412 143 APETFLI 149 (185)
T ss_pred CCeEEEE
Confidence 9965544
No 93
>smart00594 UAS UAS domain.
Probab=99.06 E-value=1.4e-09 Score=78.58 Aligned_cols=77 Identities=10% Similarity=0.171 Sum_probs=63.0
Q ss_pred hhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHH---HHHHHHhCCCeEEEEEEccCC-hHHHHHHcCCCccCeEEEE
Q 030523 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNKV-SKDLVKRGNISKMPTIQVI 159 (175)
Q Consensus 84 ~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~-~~~l~~~~~I~~~Pt~~~f 159 (175)
..+++++..+++++|+++|+|+++||++|+.+...+ .++.+.++.++.+..+|++.. ...++++|++.++|+++++
T Consensus 14 gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l 93 (122)
T smart00594 14 GSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIV 93 (122)
T ss_pred CCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEE
Confidence 368888888878999999999999999999998654 445555555788888998753 3458999999999999998
Q ss_pred e
Q 030523 160 F 160 (175)
Q Consensus 160 ~ 160 (175)
.
T Consensus 94 ~ 94 (122)
T smart00594 94 D 94 (122)
T ss_pred e
Confidence 5
No 94
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.02 E-value=1.4e-09 Score=77.65 Aligned_cols=66 Identities=21% Similarity=0.408 Sum_probs=50.3
Q ss_pred cCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEc---------------------cCChHHHHHHcCCCcc
Q 030523 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV---------------------NKVSKDLVKRGNISKM 153 (175)
Q Consensus 95 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~---------------------d~~~~~l~~~~~I~~~ 153 (175)
..+++++|+||++||++|+.+.|.+.++.+++ .+..+.+|- |.+. +++++|+|.++
T Consensus 18 ~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~--~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~i~~~ 94 (123)
T cd03011 18 LSGKPVLVYFWATWCPVCRFTSPTVNQLAADY--PVVSVALRSGDDGAVARFMQKKGYGFPVINDPDG-VISARWGVSVT 94 (123)
T ss_pred hCCCEEEEEEECCcChhhhhhChHHHHHHhhC--CEEEEEccCCCHHHHHHHHHHcCCCccEEECCCc-HHHHhCCCCcc
Confidence 35689999999999999999999999998774 222222221 2333 48999999999
Q ss_pred CeEEEEeecc
Q 030523 154 PTIQVIFFFP 163 (175)
Q Consensus 154 Pt~~~f~~~~ 163 (175)
|+++++.-+.
T Consensus 95 P~~~vid~~g 104 (123)
T cd03011 95 PAIVIVDPGG 104 (123)
T ss_pred cEEEEEcCCC
Confidence 9999997544
No 95
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=99.02 E-value=4.2e-10 Score=91.60 Aligned_cols=93 Identities=16% Similarity=0.163 Sum_probs=74.4
Q ss_pred ceeeEEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCcc
Q 030523 74 SVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKM 153 (175)
Q Consensus 74 ~~~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~ 153 (175)
--.+.+|.+.++|.+++... ..+..|||+||-+.++.|..|...|..|+.+| +.++|++|.++..+ +..+|.+.++
T Consensus 124 fG~v~ei~~~e~~l~~ie~~-~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~ky-p~vKFvkI~a~~~~--~~~~f~~~~L 199 (265)
T PF02114_consen 124 FGEVYEIDSGEEFLDAIEKE-SKSTWVVVHIYEPGFPRCEIMNSCLECLARKY-PEVKFVKIRASKCP--ASENFPDKNL 199 (265)
T ss_dssp --SEEE--SHHHHHHHCCTS-STT-EEEEEEE-TTSCCHHHHHHHHHHHHHH--TTSEEEEEEECGCC--TTTTS-TTC-
T ss_pred CceEEEccChhhHHHHHhcc-CCCcEEEEEEEeCCCchHHHHHHHHHHHHHhC-CceEEEEEehhccC--cccCCcccCC
Confidence 44678898888898888533 34567999999999999999999999999999 89999999998876 5788999999
Q ss_pred CeEEEEeecccceeccc
Q 030523 154 PTIQVIFFFPFYFTFLF 170 (175)
Q Consensus 154 Pt~~~f~~~~~~~~~~~ 170 (175)
||+++|+.|.+.++|+-
T Consensus 200 PtllvYk~G~l~~~~V~ 216 (265)
T PF02114_consen 200 PTLLVYKNGDLIGNFVG 216 (265)
T ss_dssp SEEEEEETTEEEEEECT
T ss_pred CEEEEEECCEEEEeEEe
Confidence 99999999999999864
No 96
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=1.1e-09 Score=93.41 Aligned_cols=78 Identities=23% Similarity=0.412 Sum_probs=68.4
Q ss_pred hhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhC--CCeEEEEEEccCChHHHHHHcCCCccCeEEEEe
Q 030523 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD--TKLKFYYVDVNKVSKDLVKRGNISKMPTIQVIF 160 (175)
Q Consensus 83 ~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~f~ 160 (175)
.++++..+. +.+..++|.||+|||++|+.+.|.+++++..++ ..+.+..+|++.... ++.+++|.++||+++|.
T Consensus 151 ~~~~~~~~~---~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~-~~~~~~v~~~Pt~~~f~ 226 (383)
T KOG0191|consen 151 KDNFDETVK---DSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKS-LASRLEVRGYPTLKLFP 226 (383)
T ss_pred ccchhhhhh---ccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHH-HhhhhcccCCceEEEec
Confidence 346776665 678999999999999999999999999999884 679999999997775 89999999999999998
Q ss_pred eccc
Q 030523 161 FFPF 164 (175)
Q Consensus 161 ~~~~ 164 (175)
-+..
T Consensus 227 ~~~~ 230 (383)
T KOG0191|consen 227 PGEE 230 (383)
T ss_pred CCCc
Confidence 7766
No 97
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.98 E-value=2.4e-09 Score=80.92 Aligned_cols=64 Identities=16% Similarity=0.512 Sum_probs=54.4
Q ss_pred CCCcEEEEEEcCCChhhhhchHHHHHHHHHhCC-CeEEEEEEccCCh---------------------HHHHHHcCCCcc
Q 030523 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVS---------------------KDLVKRGNISKM 153 (175)
Q Consensus 96 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~---------------------~~l~~~~~I~~~ 153 (175)
.+++++|+||++||++|+...|.+.++.+++++ ++.++.|++|... ..+.+.|+|.++
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 578999999999999999999999999999854 4899999876432 237899999999
Q ss_pred CeEEEE
Q 030523 154 PTIQVI 159 (175)
Q Consensus 154 Pt~~~f 159 (175)
|+++++
T Consensus 140 P~~~li 145 (173)
T PRK03147 140 PTTFLI 145 (173)
T ss_pred CeEEEE
Confidence 987666
No 98
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.98 E-value=2.5e-09 Score=77.19 Aligned_cols=64 Identities=17% Similarity=0.260 Sum_probs=51.7
Q ss_pred CCCcEEEEEEcCCChhhhhchHHHHHHHHHhCC-CeEEEEEEcc-----CCh---------------------HHHHHHc
Q 030523 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN-----KVS---------------------KDLVKRG 148 (175)
Q Consensus 96 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d-----~~~---------------------~~l~~~~ 148 (175)
.+++++|+||++||++|+...|.++++.+++++ ++.++.|+.+ ..+ ..+.+.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 578999999999999999999999999999963 5888888642 111 1367778
Q ss_pred CCCccCeEEEE
Q 030523 149 NISKMPTIQVI 159 (175)
Q Consensus 149 ~I~~~Pt~~~f 159 (175)
++.++|+.+++
T Consensus 102 ~v~~~P~~~vi 112 (126)
T cd03012 102 GNQYWPALYLI 112 (126)
T ss_pred CCCcCCeEEEE
Confidence 99999988765
No 99
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.96 E-value=3e-09 Score=72.79 Aligned_cols=68 Identities=26% Similarity=0.475 Sum_probs=60.0
Q ss_pred CCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEcc-CChHHHHHHcC--CCccCeEEEEeeccc
Q 030523 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN-KVSKDLVKRGN--ISKMPTIQVIFFFPF 164 (175)
Q Consensus 96 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d-~~~~~l~~~~~--I~~~Pt~~~f~~~~~ 164 (175)
.++++++.||++||++|+.+.|.+.++++++...+.++.+|+. .... +...|+ +..+|+++++..+..
T Consensus 31 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~ 101 (127)
T COG0526 31 KGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPD-LAAEFGVAVRSIPTLLLFKDGKE 101 (127)
T ss_pred CCceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChH-HHHHHhhhhccCCeEEEEeCcch
Confidence 3789999999999999999999999999999557999999997 6665 889999 999999997777654
No 100
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.95 E-value=2.3e-09 Score=101.77 Aligned_cols=71 Identities=18% Similarity=0.273 Sum_probs=56.9
Q ss_pred CCCcEEEEEEcCCChhhhhchHHHHHHHHHhCC-CeEEEEEEc---c------------------------CChHHHHHH
Q 030523 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDV---N------------------------KVSKDLVKR 147 (175)
Q Consensus 96 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~---d------------------------~~~~~l~~~ 147 (175)
.++++||+|||+||++|+.+.|.++++.+++++ ++.++.|.. | .+. .+.++
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~-~~~~~ 497 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDM-YLWRE 497 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCch-HHHHh
Confidence 689999999999999999999999999999964 377777742 1 122 36789
Q ss_pred cCCCccCeEEEE-eeccccee
Q 030523 148 GNISKMPTIQVI-FFFPFYFT 167 (175)
Q Consensus 148 ~~I~~~Pt~~~f-~~~~~~~~ 167 (175)
|+|.++|+++++ ..+..-++
T Consensus 498 ~~V~~iPt~ilid~~G~iv~~ 518 (1057)
T PLN02919 498 LGVSSWPTFAVVSPNGKLIAQ 518 (1057)
T ss_pred cCCCccceEEEECCCCeEEEE
Confidence 999999999998 45555444
No 101
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.95 E-value=2.6e-09 Score=81.52 Aligned_cols=66 Identities=26% Similarity=0.313 Sum_probs=49.4
Q ss_pred cCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCCh----------------------HHHHHHcCCCc
Q 030523 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS----------------------KDLVKRGNISK 152 (175)
Q Consensus 95 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~----------------------~~l~~~~~I~~ 152 (175)
..+++++|+||++||++|+.+.|.++++.++ ++.++.|+.+... ..+.+.|++.+
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~ 137 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYG 137 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCee
Confidence 4689999999999999999999999988753 4777777753221 12567889999
Q ss_pred cCeEEEE-eecc
Q 030523 153 MPTIQVI-FFFP 163 (175)
Q Consensus 153 ~Pt~~~f-~~~~ 163 (175)
+|+.+++ ..+.
T Consensus 138 ~P~~~~id~~G~ 149 (173)
T TIGR00385 138 APETFLVDGNGV 149 (173)
T ss_pred CCeEEEEcCCce
Confidence 9965554 3444
No 102
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.92 E-value=3e-09 Score=79.62 Aligned_cols=65 Identities=15% Similarity=0.447 Sum_probs=55.4
Q ss_pred CCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCC---eEEEEEEccCCh------------------------HHHHHHc
Q 030523 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK---LKFYYVDVNKVS------------------------KDLVKRG 148 (175)
Q Consensus 96 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~---v~~~~vd~d~~~------------------------~~l~~~~ 148 (175)
.+|.|.++|.|.||++|+.+.|++.++.+..+.+ +.++.|+-|.+. +++.++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 6799999999999999999999999998887655 888888876543 2478899
Q ss_pred CCCccCeEEEEe
Q 030523 149 NISKMPTIQVIF 160 (175)
Q Consensus 149 ~I~~~Pt~~~f~ 160 (175)
+|.++|++++.+
T Consensus 112 ~v~~iP~l~i~~ 123 (157)
T KOG2501|consen 112 EVKGIPALVILK 123 (157)
T ss_pred ccCcCceeEEec
Confidence 999999998764
No 103
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.91 E-value=7.1e-09 Score=76.34 Aligned_cols=64 Identities=23% Similarity=0.486 Sum_probs=53.3
Q ss_pred CCCcEEEEEEcC-CChhhhhchHHHHHHHHHhC-CCeEEEEEEccCChH--------------------HHHHHcCCC--
Q 030523 96 LSQPILIDWMAS-WCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVSK--------------------DLVKRGNIS-- 151 (175)
Q Consensus 96 ~~k~vlV~F~a~-wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~~--------------------~l~~~~~I~-- 151 (175)
.+++++|.||++ ||++|+...|.+.++.++++ .++.++.|..+.++. .+.++|++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 106 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM 106 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence 789999999999 99999999999999988864 458898888765431 478889988
Q ss_pred -------ccCeEEEE
Q 030523 152 -------KMPTIQVI 159 (175)
Q Consensus 152 -------~~Pt~~~f 159 (175)
++|+++++
T Consensus 107 ~~~~~~~~~P~~~lI 121 (146)
T PF08534_consen 107 EDPGNGFGIPTTFLI 121 (146)
T ss_dssp CCTTTTSSSSEEEEE
T ss_pred cccccCCeecEEEEE
Confidence 89987654
No 104
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.88 E-value=1.1e-08 Score=73.70 Aligned_cols=80 Identities=18% Similarity=0.404 Sum_probs=57.1
Q ss_pred CChhhHHHHHHHhhcCCCcEEEEEEc-------CCChhhhhchHHHHHHHHHhCCCeEEEEEEccC-------ChHHHHH
Q 030523 81 NDSDHLDQILLRAQELSQPILIDWMA-------SWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK-------VSKDLVK 146 (175)
Q Consensus 81 ~s~~~f~~~l~~~~~~~k~vlV~F~a-------~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~-------~~~~l~~ 146 (175)
.+.++|.+.+....+++++++|.|++ +|||.|....|.+++.......+..++.|.+.. +.. +..
T Consensus 3 ~gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~-fR~ 81 (119)
T PF06110_consen 3 RGYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNP-FRT 81 (119)
T ss_dssp ECHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSH-HHH
T ss_pred cCHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCC-ceE
Confidence 45788888887654677999999996 599999999999999888876689999998843 222 444
Q ss_pred --HcCCCccCeEEEEee
Q 030523 147 --RGNISKMPTIQVIFF 161 (175)
Q Consensus 147 --~~~I~~~Pt~~~f~~ 161 (175)
+++|.++||++-|--
T Consensus 82 ~p~~~l~~IPTLi~~~~ 98 (119)
T PF06110_consen 82 DPDLKLKGIPTLIRWET 98 (119)
T ss_dssp --CC---SSSEEEECTS
T ss_pred cceeeeeecceEEEECC
Confidence 699999999998753
No 105
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.87 E-value=5.7e-09 Score=80.28 Aligned_cols=88 Identities=19% Similarity=0.218 Sum_probs=80.3
Q ss_pred CceeeEEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCc
Q 030523 73 TSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISK 152 (175)
Q Consensus 73 ~~~~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~ 152 (175)
....+.+|.++.+|-..+ ..+..||+.||-+.-..|+.|...++.+++.+ -..+|++||+...|- |+.+++|..
T Consensus 64 GhG~y~ev~~Ekdf~~~~----~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h-~eTrFikvnae~~PF-lv~kL~IkV 137 (211)
T KOG1672|consen 64 GHGEYEEVASEKDFFEEV----KKSEKVVCHFYRPEFFRCKIMDKHLEILAKRH-VETRFIKVNAEKAPF-LVTKLNIKV 137 (211)
T ss_pred CCceEEEeccHHHHHHHh----hcCceEEEEEEcCCCcceehHHHHHHHHHHhc-ccceEEEEecccCce-eeeeeeeeE
Confidence 356788999999998888 67889999999999999999999999999999 789999999999995 999999999
Q ss_pred cCeEEEEeecccce
Q 030523 153 MPTIQVIFFFPFYF 166 (175)
Q Consensus 153 ~Pt~~~f~~~~~~~ 166 (175)
+|++++|+.+.+--
T Consensus 138 LP~v~l~k~g~~~D 151 (211)
T KOG1672|consen 138 LPTVALFKNGKTVD 151 (211)
T ss_pred eeeEEEEEcCEEEE
Confidence 99999999987643
No 106
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.83 E-value=3e-08 Score=72.66 Aligned_cols=81 Identities=12% Similarity=0.059 Sum_probs=67.8
Q ss_pred hhHHHHHHHhhcCCCcEEEEEEcC--CChhhhhchHHHHHHHHHhCC-CeEEEEEEccCChHHHHHHcCCCccCeEEEEe
Q 030523 84 DHLDQILLRAQELSQPILIDWMAS--WCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLVKRGNISKMPTIQVIF 160 (175)
Q Consensus 84 ~~f~~~l~~~~~~~k~vlV~F~a~--wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~f~ 160 (175)
.+++..+ ......++.|-.+ -++.+-...=++++++++|.+ ++++++||+|++++ ++.+|+|.++||+++|+
T Consensus 25 ~~~~~~~----~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~-LA~~fgV~siPTLl~Fk 99 (132)
T PRK11509 25 SRLDDWL----TQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEA-IGDRFGVFRFPATLVFT 99 (132)
T ss_pred ccHHHHH----hCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHH-HHHHcCCccCCEEEEEE
Confidence 5677777 4556666666543 568888888999999999963 59999999999997 99999999999999999
Q ss_pred ecccceecc
Q 030523 161 FFPFYFTFL 169 (175)
Q Consensus 161 ~~~~~~~~~ 169 (175)
.|..-|+..
T Consensus 100 dGk~v~~i~ 108 (132)
T PRK11509 100 GGNYRGVLN 108 (132)
T ss_pred CCEEEEEEe
Confidence 999888764
No 107
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.81 E-value=1.7e-08 Score=78.26 Aligned_cols=71 Identities=17% Similarity=0.190 Sum_probs=50.0
Q ss_pred cCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccC-------------------ChHHHHHHcCCCccCe
Q 030523 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK-------------------VSKDLVKRGNISKMPT 155 (175)
Q Consensus 95 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~-------------------~~~~l~~~~~I~~~Pt 155 (175)
..+++++|+||++||++|+.+.|.+.++.++.+ +.++.|+.+. ...++.+.|++.++|+
T Consensus 72 ~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~--~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~ 149 (189)
T TIGR02661 72 APGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE--TDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPY 149 (189)
T ss_pred cCCCEEEEEEECCCChhHHHHHHHHHHHHHhcC--CcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccce
Confidence 467899999999999999999999999987753 3444444211 0123678899999998
Q ss_pred EEEEeecccceeccc
Q 030523 156 IQVIFFFPFYFTFLF 170 (175)
Q Consensus 156 ~~~f~~~~~~~~~~~ 170 (175)
.+++ +..|+.+.
T Consensus 150 ~~lI---D~~G~I~~ 161 (189)
T TIGR02661 150 GVLL---DQDGKIRA 161 (189)
T ss_pred EEEE---CCCCeEEE
Confidence 7443 33455443
No 108
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=98.79 E-value=3.5e-08 Score=70.95 Aligned_cols=84 Identities=21% Similarity=0.389 Sum_probs=76.1
Q ss_pred eEEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeE
Q 030523 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156 (175)
Q Consensus 77 ~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~ 156 (175)
+.++++.++.++++.. ...+.++|-|.-+|-+.|..|...+.++++...+-+.++-+|+++.++ +.+.|++...||+
T Consensus 5 Lp~L~s~~~VdqaI~~--t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~-~~~~~~l~~p~tv 81 (142)
T KOG3414|consen 5 LPTLHSGWEVDQAILS--TEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPD-FVKMYELYDPPTV 81 (142)
T ss_pred ccccccHHHHHHHHhc--ccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhh-hhhhhcccCCceE
Confidence 3467788899999975 688999999999999999999999999999987778999999999987 9999999999999
Q ss_pred EEEeecc
Q 030523 157 QVIFFFP 163 (175)
Q Consensus 157 ~~f~~~~ 163 (175)
++|+.+.
T Consensus 82 mfFfn~k 88 (142)
T KOG3414|consen 82 MFFFNNK 88 (142)
T ss_pred EEEEcCc
Confidence 9999875
No 109
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.3e-08 Score=79.64 Aligned_cols=87 Identities=23% Similarity=0.375 Sum_probs=72.7
Q ss_pred eeeEEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhC-CCeEEEEEEccCChHHHHHHcCCC--
Q 030523 75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVSKDLVKRGNIS-- 151 (175)
Q Consensus 75 ~~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~~~l~~~~~I~-- 151 (175)
-.++-.++.+.+++.+.. +..+.|+|.|+|.|.+.|....|.+.++..+|. +..+|.+||+...++ .+++|+|.
T Consensus 124 e~ikyf~~~q~~deel~r--nk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd-~a~kfris~s 200 (265)
T KOG0914|consen 124 ETIKYFTNMQLEDEELDR--NKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPD-VAAKFRISLS 200 (265)
T ss_pred hheeeecchhhHHHHhcc--CCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcC-hHHheeeccC
Confidence 334555666667776643 688899999999999999999999999999985 469999999999997 89999885
Q ss_pred ----ccCeEEEEeeccc
Q 030523 152 ----KMPTIQVIFFFPF 164 (175)
Q Consensus 152 ----~~Pt~~~f~~~~~ 164 (175)
.+||+++|.-+.-
T Consensus 201 ~~srQLPT~ilFq~gkE 217 (265)
T KOG0914|consen 201 PGSRQLPTYILFQKGKE 217 (265)
T ss_pred cccccCCeEEEEccchh
Confidence 5899999987653
No 110
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.76 E-value=2.6e-08 Score=76.73 Aligned_cols=57 Identities=16% Similarity=0.311 Sum_probs=47.0
Q ss_pred EEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCC------------hHHHHHHcCC--CccCeEEEE
Q 030523 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV------------SKDLVKRGNI--SKMPTIQVI 159 (175)
Q Consensus 101 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~------------~~~l~~~~~I--~~~Pt~~~f 159 (175)
+|+||++||++|+...|.++++++++ ++.++.|++|.. +..+.+.|++ .++||.+++
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~--g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLI 143 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQY--GFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLV 143 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHc--CCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEE
Confidence 77899999999999999999999998 377777777643 2236678885 699999888
No 111
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.76 E-value=4.1e-08 Score=59.93 Aligned_cols=61 Identities=33% Similarity=0.456 Sum_probs=50.9
Q ss_pred EEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHH--HHcCCCccCeEEEEeec
Q 030523 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLV--KRGNISKMPTIQVIFFF 162 (175)
Q Consensus 101 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~--~~~~I~~~Pt~~~f~~~ 162 (175)
++.||++||++|+.+.+.+.++ +...+++.+..+|++....... ..+++..+|+++++..+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 5789999999999999999998 4445789999999999875222 47899999999888754
No 112
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=6.2e-08 Score=69.11 Aligned_cols=81 Identities=19% Similarity=0.371 Sum_probs=65.0
Q ss_pred EcCChhhHHHHHHHhhcCCCcEEEEEEc--------CCChhhhhchHHHHHHHHHhCCCeEEEEEEccC-------ChHH
Q 030523 79 PINDSDHLDQILLRAQELSQPILIDWMA--------SWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK-------VSKD 143 (175)
Q Consensus 79 ~i~s~~~f~~~l~~~~~~~k~vlV~F~a--------~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~-------~~~~ 143 (175)
.....++|++.+..- .+++.++|+|++ +|||.|.+..|.+.+..+....++.|+.|++.. +..
T Consensus 8 ~~~g~e~~~~~~~~~-~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~- 85 (128)
T KOG3425|consen 8 LLPGYESFEETLKNV-ENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANP- 85 (128)
T ss_pred ccchHHHHHHHHHHH-hCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCc-
Confidence 345567888888765 466669999996 699999999999999988777799999999954 222
Q ss_pred HHHHcCC-CccCeEEEEee
Q 030523 144 LVKRGNI-SKMPTIQVIFF 161 (175)
Q Consensus 144 l~~~~~I-~~~Pt~~~f~~ 161 (175)
+.+..++ .++||++=|..
T Consensus 86 FR~d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 86 FRKDPGILTAVPTLLRWKR 104 (128)
T ss_pred cccCCCceeecceeeEEcC
Confidence 5666777 99999998874
No 113
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.70 E-value=5.9e-08 Score=62.48 Aligned_cols=53 Identities=25% Similarity=0.404 Sum_probs=43.7
Q ss_pred EEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChH---HHHHHcCCCccCeEEEE
Q 030523 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNISKMPTIQVI 159 (175)
Q Consensus 101 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~l~~~~~I~~~Pt~~~f 159 (175)
+..|+++||++|+.+.+.+++ .++.+..+|++.+++ ++.+.+++.++|++++.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~------~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~ 57 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS------KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG 57 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH------CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC
Confidence 567999999999999988865 358889999988754 25677999999999975
No 114
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.64 E-value=3.7e-07 Score=66.27 Aligned_cols=80 Identities=23% Similarity=0.416 Sum_probs=68.3
Q ss_pred EEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEE
Q 030523 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQ 157 (175)
Q Consensus 78 ~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~ 157 (175)
.++.+..+.++++.. +.++.++|.|..+|-+.|..|...+.+++++.++-..++.||+++.++ +.+.|.+. -|..+
T Consensus 3 ~~L~s~~~VDqAI~~--e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpd-fn~~yel~-dP~tv 78 (133)
T PF02966_consen 3 PHLHSGWHVDQAILS--EEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPD-FNQMYELY-DPCTV 78 (133)
T ss_dssp EEE-SHHHHHHHHHH---SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHC-CHHHTTS--SSEEE
T ss_pred cccCccchHHHHHhc--cCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchh-hhcccccC-CCeEE
Confidence 467788899999976 689999999999999999999999999999997889999999999997 89999999 77766
Q ss_pred EEee
Q 030523 158 VIFF 161 (175)
Q Consensus 158 ~f~~ 161 (175)
+|++
T Consensus 79 mFF~ 82 (133)
T PF02966_consen 79 MFFF 82 (133)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6663
No 115
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.62 E-value=1.7e-07 Score=71.01 Aligned_cols=71 Identities=11% Similarity=0.254 Sum_probs=55.4
Q ss_pred CCCcEEEEEEcCCChhhhhchHHHHHHHHHhC-CCeEEEEEEccCC-------h---------------------HHHHH
Q 030523 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKV-------S---------------------KDLVK 146 (175)
Q Consensus 96 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~-------~---------------------~~l~~ 146 (175)
.++++||+||++||+.|....+.+.++.++++ .++.++.|+.|.. + ..+++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 67899999999999999999999999999985 4799999987641 1 13567
Q ss_pred HcCCCccCeEEEEeecccceecc
Q 030523 147 RGNISKMPTIQVIFFFPFYFTFL 169 (175)
Q Consensus 147 ~~~I~~~Pt~~~f~~~~~~~~~~ 169 (175)
.|+|..+|+++++ +..|+.+
T Consensus 104 ~~~v~~~P~~~li---d~~G~v~ 123 (171)
T cd02969 104 AYGAACTPDFFLF---DPDGKLV 123 (171)
T ss_pred HcCCCcCCcEEEE---CCCCeEE
Confidence 8889999986544 3344444
No 116
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.59 E-value=1.3e-07 Score=62.93 Aligned_cols=62 Identities=19% Similarity=0.204 Sum_probs=46.4
Q ss_pred EEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChH----HHHHHcCCCccCeEEEEeecccce
Q 030523 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK----DLVKRGNISKMPTIQVIFFFPFYF 166 (175)
Q Consensus 101 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~----~l~~~~~I~~~Pt~~~f~~~~~~~ 166 (175)
++.|+++||++|+.+.+.++++. ..+.+.++.+|.+.+.. .+.+.+++..+|++ |..+...|
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v--~i~g~~ig 66 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNI--FINGKFIG 66 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEEc
Confidence 46799999999999999999876 33447888888876542 25667899999997 44444443
No 117
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.55 E-value=1.4e-07 Score=73.73 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=39.0
Q ss_pred CCCcEEEEEEcCCChhhhhchHHHHHHHHHhCC-CeEEEEEEcc
Q 030523 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN 138 (175)
Q Consensus 96 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d 138 (175)
.++++||.|||+||++|+...|.+.++.+++++ ++.++.|+++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~ 81 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTS 81 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecch
Confidence 578999999999999999999999999999854 5999999874
No 118
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.53 E-value=2.4e-07 Score=60.52 Aligned_cols=50 Identities=24% Similarity=0.543 Sum_probs=38.8
Q ss_pred EEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHH-----cCCCccCeEE
Q 030523 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKR-----GNISKMPTIQ 157 (175)
Q Consensus 101 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~-----~~I~~~Pt~~ 157 (175)
++.|+++||++|+.+.+.++++. +.+-.+|+++++. ..+. +++.++|+++
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~------~~~~~idi~~~~~-~~~~~~~~~~~~~~vP~i~ 56 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG------AAYEWVDIEEDEG-AADRVVSVNNGNMTVPTVK 56 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC------CceEEEeCcCCHh-HHHHHHHHhCCCceeCEEE
Confidence 57899999999999999887652 4556788887764 4444 4899999974
No 119
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=4.8e-08 Score=76.79 Aligned_cols=90 Identities=11% Similarity=0.164 Sum_probs=79.0
Q ss_pred eEEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeE
Q 030523 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156 (175)
Q Consensus 77 ~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~ 156 (175)
+..|...++| .. ..++.+++.||++||.+|+.|...++.+++.. .++.+++++.++.++ ++..+.+.++|.+
T Consensus 3 v~~i~~~~~f--~~----~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~e-is~~~~v~~vp~~ 74 (227)
T KOG0911|consen 3 VQFIVFQEQF--LD----QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFPE-ISNLIAVEAVPYF 74 (227)
T ss_pred ceeehhHHHH--HH----hccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhhH-HHHHHHHhcCcee
Confidence 4556667777 33 47899999999999999999999999999988 889999999999997 9999999999999
Q ss_pred EEEeecccceeccccccC
Q 030523 157 QVIFFFPFYFTFLFAKNL 174 (175)
Q Consensus 157 ~~f~~~~~~~~~~~~~~~ 174 (175)
+++..++.-.++..+++.
T Consensus 75 ~~~~~~~~v~~l~~~~~~ 92 (227)
T KOG0911|consen 75 VFFFLGEKVDRLSGADPP 92 (227)
T ss_pred eeeecchhhhhhhccCcH
Confidence 999998888887777653
No 120
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.52 E-value=2.2e-07 Score=70.31 Aligned_cols=71 Identities=18% Similarity=0.312 Sum_probs=46.4
Q ss_pred HHHHHhhcCCCcEEEEEEcCCChhhhhchHH-H--HHHHHHhCCCeEEEEEEccCChHHHHHHc--------CCCccCeE
Q 030523 88 QILLRAQELSQPILIDWMASWCRKCIYLKPK-L--EKLAAEFDTKLKFYYVDVNKVSKDLVKRG--------NISKMPTI 156 (175)
Q Consensus 88 ~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~-l--~~l~~~~~~~v~~~~vd~d~~~~~l~~~~--------~I~~~Pt~ 156 (175)
+++..+++++|+++|.++.+||..|+.|... + .++++.++.++.-++||.++.|+ +...| +.-+.|+.
T Consensus 28 ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pd-id~~y~~~~~~~~~~gGwPl~ 106 (163)
T PF03190_consen 28 EALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPD-IDKIYMNAVQAMSGSGGWPLT 106 (163)
T ss_dssp HHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HH-HHHHHHHHHHHHHS---SSEE
T ss_pred HHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCcc-HHHHHHHHHHHhcCCCCCCce
Confidence 3344444899999999999999999999842 2 34444444458889999999997 77777 78899998
Q ss_pred EEE
Q 030523 157 QVI 159 (175)
Q Consensus 157 ~~f 159 (175)
++.
T Consensus 107 vfl 109 (163)
T PF03190_consen 107 VFL 109 (163)
T ss_dssp EEE
T ss_pred EEE
Confidence 865
No 121
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.49 E-value=3.6e-07 Score=70.64 Aligned_cols=42 Identities=7% Similarity=0.054 Sum_probs=34.2
Q ss_pred cCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEE------EEEEccC
Q 030523 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKF------YYVDVNK 139 (175)
Q Consensus 95 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~------~~vd~d~ 139 (175)
-.+|+.+|.|||+||++|+...|.++++.++ ++.+ +-||.|+
T Consensus 57 l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~---~~~~~~y~~t~~IN~dd 104 (184)
T TIGR01626 57 LAGKVRVVHHIAGRTSAKEXNASLIDAIKAA---KFPPVKYQTTTIINADD 104 (184)
T ss_pred cCCCEEEEEEEecCCChhhccchHHHHHHHc---CCCcccccceEEEECcc
Confidence 4699999999999999999999999999654 2444 6666654
No 122
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.48 E-value=6.9e-07 Score=63.51 Aligned_cols=64 Identities=19% Similarity=0.464 Sum_probs=51.2
Q ss_pred CCCcEEEEEEcC-CChhhhhchHHHHHHHHHhCC-CeEEEEEEccCCh--------------------HHHHHHcCCC--
Q 030523 96 LSQPILIDWMAS-WCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVS--------------------KDLVKRGNIS-- 151 (175)
Q Consensus 96 ~~k~vlV~F~a~-wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~--------------------~~l~~~~~I~-- 151 (175)
.++++||.||+. ||++|+...+.+.++.++++. ++.++.|..|... ..+++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 569999999999 999999999999999998853 7999999886532 1367777777
Q ss_pred ----ccCeEEEE
Q 030523 152 ----KMPTIQVI 159 (175)
Q Consensus 152 ----~~Pt~~~f 159 (175)
.+|+++++
T Consensus 104 ~~~~~~p~~~li 115 (124)
T PF00578_consen 104 KDTLALPAVFLI 115 (124)
T ss_dssp TTSEESEEEEEE
T ss_pred cCCceEeEEEEE
Confidence 66666554
No 123
>PLN02412 probable glutathione peroxidase
Probab=98.40 E-value=9.2e-07 Score=67.17 Aligned_cols=43 Identities=19% Similarity=0.146 Sum_probs=39.0
Q ss_pred CCCcEEEEEEcCCChhhhhchHHHHHHHHHhCC-CeEEEEEEcc
Q 030523 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN 138 (175)
Q Consensus 96 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d 138 (175)
.++++||+||++||++|+...|.+.++.+++++ ++.++.|+++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~ 71 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCN 71 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEeccc
Confidence 579999999999999999999999999999964 5999999875
No 124
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.40 E-value=2.5e-06 Score=67.62 Aligned_cols=65 Identities=17% Similarity=0.196 Sum_probs=55.8
Q ss_pred CCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccC-----------ChHHHHHHcCCCccCeEEEEeecc
Q 030523 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK-----------VSKDLVKRGNISKMPTIQVIFFFP 163 (175)
Q Consensus 96 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~-----------~~~~l~~~~~I~~~Pt~~~f~~~~ 163 (175)
.++.-|++||.+.|+.|+.+.|++..+++++ ++.++.|++|. +.. ++++++|..+|++++..-..
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~y--g~~v~~vs~DG~~~~~fp~~~~~~g-~~~~l~v~~~Pal~Lv~~~~ 194 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKY--GFSVIPVSLDGRPIPSFPNPRPDPG-QAKRLGVKVTPALFLVNPNT 194 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHh--CCEEEEEecCCCCCcCCCCCCCCHH-HHHHcCCCcCCEEEEEECCC
Confidence 5778899999999999999999999999999 47777777763 344 89999999999999887655
No 125
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.36 E-value=7.2e-07 Score=66.50 Aligned_cols=42 Identities=24% Similarity=0.175 Sum_probs=37.9
Q ss_pred CCCcEEEEEEcCCChhhhhchHHHHHHHHHhC-CCeEEEEEEcc
Q 030523 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVN 138 (175)
Q Consensus 96 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d 138 (175)
.+++++|+|||+||+ |+...|.++++.++++ .++.++.|+++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~ 63 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN 63 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 579999999999999 9999999999999995 46999999865
No 126
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.36 E-value=8.5e-07 Score=64.85 Aligned_cols=74 Identities=14% Similarity=0.122 Sum_probs=50.5
Q ss_pred CCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHc---CCCccCeEEEE-eecccceecccc
Q 030523 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRG---NISKMPTIQVI-FFFPFYFTFLFA 171 (175)
Q Consensus 96 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~---~I~~~Pt~~~f-~~~~~~~~~~~~ 171 (175)
..+.-++.|..+|||.|+..-|.+.++++.. +++.+-.+..|++++ +.++| +...+|+++++ ..+.--|++.-|
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~-p~i~~~~i~rd~~~e-l~~~~lt~g~~~IP~~I~~d~~~~~lg~wger 117 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEAN-PNIEVRIILRDENKE-LMDQYLTNGGRSIPTFIFLDKDGKELGRWGER 117 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH--TTEEEEEE-HHHHHH-HTTTTTT-SS--SSEEEEE-TT--EEEEEESS
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhC-CCCeEEEEEecCChh-HHHHHHhCCCeecCEEEEEcCCCCEeEEEcCC
Confidence 4556777899999999999999999999987 678888888888776 55554 78899999999 446666666433
No 127
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.35 E-value=8e-07 Score=66.26 Aligned_cols=43 Identities=16% Similarity=0.054 Sum_probs=38.7
Q ss_pred cCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCC-CeEEEEEEc
Q 030523 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDV 137 (175)
Q Consensus 95 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~ 137 (175)
-.++++||.|||+||++|+...|.+.++.+++++ ++.++.|++
T Consensus 20 ~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~ 63 (153)
T TIGR02540 20 YRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC 63 (153)
T ss_pred hCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence 3678899999999999999999999999999954 699999986
No 128
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.29 E-value=1.1e-06 Score=70.45 Aligned_cols=43 Identities=21% Similarity=0.201 Sum_probs=39.2
Q ss_pred CCCcEEEEEEcCCChhhhhchHHHHHHHHHhCC-CeEEEEEEcc
Q 030523 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN 138 (175)
Q Consensus 96 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d 138 (175)
.++++||+||++||++|+...|.+.++.+++++ ++.++.|+++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d 141 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCN 141 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecc
Confidence 579999999999999999999999999999964 5999999975
No 129
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.28 E-value=2.8e-06 Score=57.24 Aligned_cols=66 Identities=23% Similarity=0.301 Sum_probs=50.4
Q ss_pred EEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCCh---HHHHHHcC--CCccCeEEEEeecccceec
Q 030523 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS---KDLVKRGN--ISKMPTIQVIFFFPFYFTF 168 (175)
Q Consensus 100 vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~---~~l~~~~~--I~~~Pt~~~f~~~~~~~~~ 168 (175)
-++.|+.+||+.|+.....++++..++ .++.+..+|++.++ +++.+..+ +..+|+++ ..+...|.|
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~-~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~igg~ 72 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEER-DDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKHIGGC 72 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccc-cCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEEEcCH
Confidence 367899999999999999999998876 67899999998763 23555555 48899975 455554443
No 130
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.26 E-value=9.1e-06 Score=58.32 Aligned_cols=74 Identities=16% Similarity=0.191 Sum_probs=58.5
Q ss_pred hHHHHHHHhhcCCCcEEEEEEcC----CChhhhhch--HHHHHHHHHhCCCeEEEEEEccCC-hHHHHHHcCCCccCeEE
Q 030523 85 HLDQILLRAQELSQPILIDWMAS----WCRKCIYLK--PKLEKLAAEFDTKLKFYYVDVNKV-SKDLVKRGNISKMPTIQ 157 (175)
Q Consensus 85 ~f~~~l~~~~~~~k~vlV~F~a~----wC~~C~~~~--p~l~~l~~~~~~~v~~~~vd~d~~-~~~l~~~~~I~~~Pt~~ 157 (175)
.+++++..++++.|.++|++|++ ||..|+... |.+.++. +.++.+...|++.. ...++..+++.++|++.
T Consensus 5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~l---n~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~ 81 (116)
T cd02991 5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYI---NTRMLFWACSVAKPEGYRVSQALRERTYPFLA 81 (116)
T ss_pred cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHH---HcCEEEEEEecCChHHHHHHHHhCCCCCCEEE
Confidence 56777777779999999999999 899997654 4454444 34689999999764 33588999999999999
Q ss_pred EEee
Q 030523 158 VIFF 161 (175)
Q Consensus 158 ~f~~ 161 (175)
++.-
T Consensus 82 ~l~~ 85 (116)
T cd02991 82 MIML 85 (116)
T ss_pred EEEe
Confidence 9863
No 131
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.26 E-value=3.2e-06 Score=61.96 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=38.8
Q ss_pred CCCcEEEEEEcCC-ChhhhhchHHHHHHHHHhCCCeEEEEEEccC
Q 030523 96 LSQPILIDWMASW-CRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139 (175)
Q Consensus 96 ~~k~vlV~F~a~w-C~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~ 139 (175)
.++++||+||+.| |++|+...|.+.++.+++ .++.++.|++|.
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-~~~~vi~Is~d~ 68 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKL-DNTVVLTISADL 68 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhc-CCCEEEEEECCC
Confidence 5789999999999 699999999999999998 589999999875
No 132
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.23 E-value=5.4e-06 Score=60.23 Aligned_cols=44 Identities=14% Similarity=0.163 Sum_probs=37.4
Q ss_pred CCCcEEEEEE-cCCChhhhhchHHHHHHHHHhC-CCeEEEEEEccC
Q 030523 96 LSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNK 139 (175)
Q Consensus 96 ~~k~vlV~F~-a~wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~ 139 (175)
.+++++|.|| +.||+.|....|.+.++.+++. .++.++.|..|.
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~ 67 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDS 67 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4789999999 5899999999999999988874 368888887754
No 133
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.23 E-value=7.9e-06 Score=59.75 Aligned_cols=45 Identities=18% Similarity=0.220 Sum_probs=35.5
Q ss_pred CCcEEEEEEcCCChhhhhchHHHHHHHHHhC-CCeEEEEEEccCCh
Q 030523 97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVS 141 (175)
Q Consensus 97 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~ 141 (175)
++.+|+.|+++||++|+...|.+.++.+++. .++.++.|+.+...
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~ 69 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPE 69 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHH
Confidence 3444444569999999999999999999884 46999999886543
No 134
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.21 E-value=2e-07 Score=73.71 Aligned_cols=80 Identities=31% Similarity=0.459 Sum_probs=66.1
Q ss_pred eEEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHh-CCCeEEEEEEccCChHHHHHHcCCCccCe
Q 030523 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEF-DTKLKFYYVDVNKVSKDLVKRGNISKMPT 155 (175)
Q Consensus 77 ~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~-~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt 155 (175)
++.| +++++..++ ..-+++.|+||||+.|+...|.++.++.-- +-.+++.+||++.++. |.-+|-+..+||
T Consensus 26 ~~~~-~eenw~~~l------~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npg-LsGRF~vtaLpt 97 (248)
T KOG0913|consen 26 LTRI-DEENWKELL------TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPG-LSGRFLVTALPT 97 (248)
T ss_pred eEEe-cccchhhhh------chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccc-cceeeEEEecce
Confidence 3444 456888888 345899999999999999999999887653 2369999999999997 999999999999
Q ss_pred EEEEeeccc
Q 030523 156 IQVIFFFPF 164 (175)
Q Consensus 156 ~~~f~~~~~ 164 (175)
|.=-++|.+
T Consensus 98 IYHvkDGeF 106 (248)
T KOG0913|consen 98 IYHVKDGEF 106 (248)
T ss_pred EEEeecccc
Confidence 987776654
No 135
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=5.7e-06 Score=61.93 Aligned_cols=66 Identities=17% Similarity=0.363 Sum_probs=54.8
Q ss_pred cCCCcEEEEEEcCCChhhhhchHHH---HHHHHHhCCCeEEEEEEccCC---------------hHHHHHHcCCCccCeE
Q 030523 95 ELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNKV---------------SKDLVKRGNISKMPTI 156 (175)
Q Consensus 95 ~~~k~vlV~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~---------------~~~l~~~~~I~~~Pt~ 156 (175)
.+++..++.|-++.|+.|..+...+ +++.+.+.+++.++.+++... .++|++.|+++++||+
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtf 119 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTF 119 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceE
Confidence 6889999999999999999999766 456666667799999988431 1359999999999999
Q ss_pred EEEe
Q 030523 157 QVIF 160 (175)
Q Consensus 157 ~~f~ 160 (175)
++|.
T Consensus 120 vFfd 123 (182)
T COG2143 120 VFFD 123 (182)
T ss_pred EEEc
Confidence 9885
No 136
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.20 E-value=4.7e-06 Score=63.26 Aligned_cols=43 Identities=14% Similarity=0.175 Sum_probs=39.0
Q ss_pred CCCcEEEEEEcCC-ChhhhhchHHHHHHHHHhCCCeEEEEEEccC
Q 030523 96 LSQPILIDWMASW-CRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139 (175)
Q Consensus 96 ~~k~vlV~F~a~w-C~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~ 139 (175)
.+++++|+||++| |++|....|.+.++.+++ .++.++.|+.|.
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~-~~~~vv~vs~D~ 86 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAEL-DNTVVLCISADL 86 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHc-CCcEEEEEeCCC
Confidence 5789999999999 999999999999999998 589999998875
No 137
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.15 E-value=1.1e-05 Score=53.40 Aligned_cols=53 Identities=17% Similarity=0.387 Sum_probs=41.9
Q ss_pred EEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEEE
Q 030523 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQV 158 (175)
Q Consensus 102 V~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~ 158 (175)
|.+++++|+.|..+...+++++..+ + +.+-.+|+...++ + .+|+|.++|++++
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~-~-i~~ei~~~~~~~~-~-~~ygv~~vPalvI 55 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEEL-G-IEVEIIDIEDFEE-I-EKYGVMSVPALVI 55 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHT-T-EEEEEEETTTHHH-H-HHTT-SSSSEEEE
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhc-C-CeEEEEEccCHHH-H-HHcCCCCCCEEEE
Confidence 3447888999999999999999998 3 7777777744443 5 9999999999965
No 138
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=98.14 E-value=2.3e-05 Score=55.20 Aligned_cols=86 Identities=20% Similarity=0.325 Sum_probs=61.6
Q ss_pred eEEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCCh---HHHHHHcCCC-c
Q 030523 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS---KDLVKRGNIS-K 152 (175)
Q Consensus 77 ~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~---~~l~~~~~I~-~ 152 (175)
+++|++.+++++++..+ ..+|++|+=.++.||-.......|++......+++.++.+|+-+.. ..++++|||. .
T Consensus 1 w~~L~t~eql~~i~~~S--~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~He 78 (105)
T PF11009_consen 1 WKPLTTEEQLEEILEES--KEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHE 78 (105)
T ss_dssp --E--SHHHHHHHHHH-----SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----
T ss_pred CCccCCHHHHHHHHHhc--ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcC
Confidence 35788999999999764 5889999889999999999999999999988556999999997753 2489999998 6
Q ss_pred cCeEEEEeeccc
Q 030523 153 MPTIQVIFFFPF 164 (175)
Q Consensus 153 ~Pt~~~f~~~~~ 164 (175)
-|-++++..+..
T Consensus 79 SPQ~ili~~g~~ 90 (105)
T PF11009_consen 79 SPQVILIKNGKV 90 (105)
T ss_dssp SSEEEEEETTEE
T ss_pred CCcEEEEECCEE
Confidence 899999998764
No 139
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=98.13 E-value=8.4e-06 Score=63.97 Aligned_cols=95 Identities=17% Similarity=0.192 Sum_probs=83.3
Q ss_pred CCCceeeEEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCC
Q 030523 71 RPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNI 150 (175)
Q Consensus 71 ~~~~~~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I 150 (175)
.|..-.+.++++..+|.+.|... .+...++|..|-+.-+.|.++...+.-|+.+| +.++|+++-..... ...+|..
T Consensus 134 gp~~~~V~El~~gkqfld~idke-~ks~~i~VhIYEdgi~gcealn~~~~cLAAey-P~vKFckikss~~g--as~~F~~ 209 (273)
T KOG3171|consen 134 GPRYGFVYELETGKQFLDTIDKE-LKSTTIVVHIYEDGIKGCEALNSSLTCLAAEY-PIVKFCKIKSSNTG--ASDRFSL 209 (273)
T ss_pred CCccceEEEeccchhHHHHHhcc-cceEEEEEEEecCCCchHHHHhhhHHHhhccC-CceeEEEeeecccc--chhhhcc
Confidence 34455688999999999999765 46678899999999999999999999999999 89999999877665 4788999
Q ss_pred CccCeEEEEeecccceecc
Q 030523 151 SKMPTIQVIFFFPFYFTFL 169 (175)
Q Consensus 151 ~~~Pt~~~f~~~~~~~~~~ 169 (175)
.++||+++|+.+-+-|.|.
T Consensus 210 n~lP~LliYkgGeLIgNFv 228 (273)
T KOG3171|consen 210 NVLPTLLIYKGGELIGNFV 228 (273)
T ss_pred cCCceEEEeeCCchhHHHH
Confidence 9999999999999988875
No 140
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.10 E-value=7.1e-06 Score=54.29 Aligned_cols=61 Identities=18% Similarity=0.218 Sum_probs=45.1
Q ss_pred EEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCCh----HHHHHHcCCCccCeEEEEeeccccee
Q 030523 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS----KDLVKRGNISKMPTIQVIFFFPFYFT 167 (175)
Q Consensus 101 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~----~~l~~~~~I~~~Pt~~~f~~~~~~~~ 167 (175)
++.|+++|||.|+.+.+.++++.. .+.++.+|.+.+. ..+.+..++.++|++ |..+...|.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~igg 66 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV----KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKFIGG 66 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC----CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEEcC
Confidence 577999999999999999988754 4578888877653 225566788999996 455555443
No 141
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.09 E-value=2.5e-05 Score=63.36 Aligned_cols=64 Identities=11% Similarity=0.105 Sum_probs=54.3
Q ss_pred CCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCC-----------hHHHHHHcCCCccCeEEEEeec
Q 030523 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV-----------SKDLVKRGNISKMPTIQVIFFF 162 (175)
Q Consensus 96 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~-----------~~~l~~~~~I~~~Pt~~~f~~~ 162 (175)
.++.-|++||.+.|+.|+.+.|++..++++| ++.++.|++|.. .. ++++++|..+|++++..-.
T Consensus 149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~y--gi~v~~VS~DG~~~p~fp~~~~d~g-qa~~l~v~~~Pal~Lv~~~ 223 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEY--GISVIPISVDGTLIPGLPNSRSDSG-QAQHLGVKYFPALYLVNPK 223 (256)
T ss_pred HhceeEEEEECCCCchhHHHHHHHHHHHHHh--CCeEEEEecCCCCCCCCCCccCChH-HHHhcCCccCceEEEEECC
Confidence 4568899999999999999999999999999 377777777754 33 7899999999999987655
No 142
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.07 E-value=1.4e-05 Score=51.09 Aligned_cols=52 Identities=21% Similarity=0.334 Sum_probs=38.6
Q ss_pred EEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChH---HHHHHcCCCccCeEEE
Q 030523 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNISKMPTIQV 158 (175)
Q Consensus 101 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~l~~~~~I~~~Pt~~~ 158 (175)
++.|+++||++|+.+.+.+.+. ++.+..+|++.+++ .+.+..++..+|++++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~ 56 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI 56 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE
Confidence 5779999999999988877652 46777788877653 1223337889999976
No 143
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.06 E-value=1.7e-05 Score=57.75 Aligned_cols=44 Identities=14% Similarity=0.401 Sum_probs=38.8
Q ss_pred CCCcEEEEEEcCCChh-hhhchHHHHHHHHHhCC----CeEEEEEEccC
Q 030523 96 LSQPILIDWMASWCRK-CIYLKPKLEKLAAEFDT----KLKFYYVDVNK 139 (175)
Q Consensus 96 ~~k~vlV~F~a~wC~~-C~~~~p~l~~l~~~~~~----~v~~~~vd~d~ 139 (175)
.+++++|.||++||++ |....+.+.++.++++. ++.++.|..|.
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 5789999999999998 99999999999998854 49999998864
No 144
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.05 E-value=1.2e-05 Score=61.93 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=35.9
Q ss_pred CCCcE-EEEEEcCCChhhhhchHHHHHHHHHhCC-CeEEEEEEcc
Q 030523 96 LSQPI-LIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN 138 (175)
Q Consensus 96 ~~k~v-lV~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d 138 (175)
.++++ |+.+||+||++|+...|.++++.+++++ ++.++.|+++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~ 83 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN 83 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence 56654 4556999999999999999999999854 5999999874
No 145
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.04 E-value=2.8e-05 Score=56.35 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=38.1
Q ss_pred CCCcEEEEEE-cCCChhhhhchHHHHHHHHHhC-CCeEEEEEEccC
Q 030523 96 LSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNK 139 (175)
Q Consensus 96 ~~k~vlV~F~-a~wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~ 139 (175)
.+++++|.|| +.||+.|....|.+.++.++++ .++.++.|..+.
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~ 66 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDS 66 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 5789999999 7899999999999999999873 468899888754
No 146
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.03 E-value=2e-05 Score=60.94 Aligned_cols=44 Identities=16% Similarity=0.149 Sum_probs=37.8
Q ss_pred CCCcEEEEEE-cCCChhhhhchHHHHHHHHHhC-CCeEEEEEEccC
Q 030523 96 LSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNK 139 (175)
Q Consensus 96 ~~k~vlV~F~-a~wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~ 139 (175)
.++++||+|| ++||++|....|.+.++.++++ .++.++.|.+|.
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~ 75 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDT 75 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 5789999999 9999999999999999988874 467888887664
No 147
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.02 E-value=2.1e-05 Score=59.83 Aligned_cols=44 Identities=9% Similarity=0.072 Sum_probs=38.2
Q ss_pred CCCcEEEEEE-cCCChhhhhchHHHHHHHHHhC-CCeEEEEEEccC
Q 030523 96 LSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNK 139 (175)
Q Consensus 96 ~~k~vlV~F~-a~wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~ 139 (175)
.++++||+|| +.||++|....|.+.++.+++. .++.++.|.+|.
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~ 73 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDS 73 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 4689999999 8999999999999999999984 468888888764
No 148
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.96 E-value=2.2e-05 Score=53.12 Aligned_cols=56 Identities=29% Similarity=0.432 Sum_probs=43.4
Q ss_pred EEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCCh---HHHHHHcCC--CccCeEE
Q 030523 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS---KDLVKRGNI--SKMPTIQ 157 (175)
Q Consensus 101 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~---~~l~~~~~I--~~~Pt~~ 157 (175)
++.|..+|||+|+.+...++++..++ +.+.+..+|++.+. .++.+.++- ..+|+++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~-~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if 62 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIER-ADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF 62 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCccc-CCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE
Confidence 67799999999999999999887655 45778888887543 236666664 7899984
No 149
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.91 E-value=6.4e-05 Score=47.09 Aligned_cols=52 Identities=17% Similarity=0.375 Sum_probs=41.0
Q ss_pred EEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChH---HHHHHcCCCccCeEEE
Q 030523 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNISKMPTIQV 158 (175)
Q Consensus 101 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~l~~~~~I~~~Pt~~~ 158 (175)
++.|+.+||++|+.....|++ .++.+-.+|++.+++ ++.+..+..++|++++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~------~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE------KGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH------TTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHH------cCCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 567999999999999988854 358888999988743 3445559999999875
No 150
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.88 E-value=9.1e-05 Score=59.85 Aligned_cols=64 Identities=11% Similarity=0.020 Sum_probs=51.3
Q ss_pred CCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccC-----------ChHHHHHHcCCCccCeEEEEeec
Q 030523 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK-----------VSKDLVKRGNISKMPTIQVIFFF 162 (175)
Q Consensus 96 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~-----------~~~~l~~~~~I~~~Pt~~~f~~~ 162 (175)
.++.-|++||.+.|+.|+.+.|++..++++++ +.++-|++|. +.. .+++++|..+|++++..-.
T Consensus 142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg--~~v~~VS~DG~~~p~fp~~~~d~g-qa~~l~v~~~PAl~Lv~~~ 216 (248)
T PRK13703 142 AEHYGLMFFYRGQDPIDGQLAQVINDFRDTYG--LSVIPVSVDGVINPLLPDSRTDQG-QAQRLGVKYFPALMLVDPK 216 (248)
T ss_pred HhcceEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCCccChh-HHHhcCCcccceEEEEECC
Confidence 45578999999999999999999999999994 5666666654 122 5789999999998877544
No 151
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=97.87 E-value=6.4e-05 Score=55.77 Aligned_cols=44 Identities=14% Similarity=0.181 Sum_probs=36.9
Q ss_pred CCCcEEEEEEcC-CChhhhhchHHHHHHHHHhC-CCeEEEEEEccC
Q 030523 96 LSQPILIDWMAS-WCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNK 139 (175)
Q Consensus 96 ~~k~vlV~F~a~-wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~ 139 (175)
.++++||+||+. ||+.|....+.+.++.++++ .++.++.|+.|.
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~ 74 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDK 74 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 578999999976 68889999999999988884 468899988764
No 152
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.85 E-value=5.3e-05 Score=48.03 Aligned_cols=59 Identities=22% Similarity=0.281 Sum_probs=42.8
Q ss_pred EEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChH---HHHHHcCCCccCeEEEEeeccccee
Q 030523 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNISKMPTIQVIFFFPFYFT 167 (175)
Q Consensus 101 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~l~~~~~I~~~Pt~~~f~~~~~~~~ 167 (175)
++.|+++||+.|+.+.+.+++.. +.+..+|++.+++ .+.+..+...+|+++ ..+...|.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~--~~~~~igg 63 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTVPQIF--INGEFIGG 63 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEEec
Confidence 56789999999999999988653 6778889987653 244455777888773 45554444
No 153
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.80 E-value=0.0001 Score=65.92 Aligned_cols=61 Identities=20% Similarity=0.318 Sum_probs=53.7
Q ss_pred CCCcEEEE-EEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEEE
Q 030523 96 LSQPILID-WMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQV 158 (175)
Q Consensus 96 ~~k~vlV~-F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~ 158 (175)
-++++-|. |.+++|++|......+++++.+. +++..-.+|++..++ ++++|+|.++|++++
T Consensus 474 ~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~-~~i~~~~i~~~~~~~-~~~~~~v~~vP~~~i 535 (555)
T TIGR03143 474 ITKPVNIKIGVSLSCTLCPDVVLAAQRIASLN-PNVEAEMIDVSHFPD-LKDEYGIMSVPAIVV 535 (555)
T ss_pred cCCCeEEEEEECCCCCCcHHHHHHHHHHHHhC-CCceEEEEECcccHH-HHHhCCceecCEEEE
Confidence 45666554 57999999999999999999887 689999999999997 999999999999985
No 154
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.78 E-value=7.9e-05 Score=49.48 Aligned_cols=56 Identities=13% Similarity=0.217 Sum_probs=41.7
Q ss_pred CCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCCh--HHHHHHcCCCccCeEE
Q 030523 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS--KDLVKRGNISKMPTIQ 157 (175)
Q Consensus 96 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~--~~l~~~~~I~~~Pt~~ 157 (175)
.++.-++.|+.+||+.|+..+..|++. ++.+-.+|++++. .++.+..+...+|.+.
T Consensus 5 ~~~~~V~ly~~~~Cp~C~~ak~~L~~~------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~ 62 (79)
T TIGR02190 5 RKPESVVVFTKPGCPFCAKAKATLKEK------GYDFEEIPLGNDARGRSLRAVTGATTVPQVF 62 (79)
T ss_pred CCCCCEEEEECCCCHhHHHHHHHHHHc------CCCcEEEECCCChHHHHHHHHHCCCCcCeEE
Confidence 344557789999999999999988743 4666677887653 2355667889999985
No 155
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=97.77 E-value=4.3e-05 Score=59.08 Aligned_cols=42 Identities=19% Similarity=0.161 Sum_probs=37.1
Q ss_pred CCCcEEEEEEcCCChhhhhchHHHHHHHHHhCC-CeEEEEEEcc
Q 030523 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN 138 (175)
Q Consensus 96 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d 138 (175)
.++++||.|||+||+.|+. .|.++++.++|++ ++.++.+.++
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence 6799999999999999974 8899999999954 6999999885
No 156
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=97.75 E-value=7.2e-05 Score=54.88 Aligned_cols=42 Identities=12% Similarity=0.266 Sum_probs=36.0
Q ss_pred CcEEEEEE-cCCChhhhhchHHHHHHHHHhC-CCeEEEEEEccC
Q 030523 98 QPILIDWM-ASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNK 139 (175)
Q Consensus 98 k~vlV~F~-a~wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~ 139 (175)
++++|.|| ++||+.|....|.+.++.++++ .++.++.|+.+.
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~ 72 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDS 72 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCC
Confidence 78888887 9999999999999999999884 368888887754
No 157
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.73 E-value=0.00015 Score=64.24 Aligned_cols=59 Identities=17% Similarity=0.233 Sum_probs=53.1
Q ss_pred CcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEEE
Q 030523 98 QPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQV 158 (175)
Q Consensus 98 k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~ 158 (175)
+.-+-.|+++.||+|......+++++... +++.+-.+|....++ ++++|+|.++|++++
T Consensus 117 ~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~-~~i~~~~id~~~~~~-~~~~~~v~~VP~~~i 175 (517)
T PRK15317 117 DFHFETYVSLSCHNCPDVVQALNLMAVLN-PNITHTMIDGALFQD-EVEARNIMAVPTVFL 175 (517)
T ss_pred CeEEEEEEcCCCCCcHHHHHHHHHHHHhC-CCceEEEEEchhCHh-HHHhcCCcccCEEEE
Confidence 34478899999999999999999999876 789999999999997 999999999999964
No 158
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=97.70 E-value=0.00018 Score=55.81 Aligned_cols=44 Identities=11% Similarity=0.100 Sum_probs=38.0
Q ss_pred CCCcEEEEEE-cCCChhhhhchHHHHHHHHHhC-CCeEEEEEEccC
Q 030523 96 LSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNK 139 (175)
Q Consensus 96 ~~k~vlV~F~-a~wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~ 139 (175)
.++++|+.|| +.||+.|....+.+.++.+++. .++.++.|+.|.
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~ 75 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDT 75 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 5679999999 9999999999999999999884 468888888754
No 159
>PHA03050 glutaredoxin; Provisional
Probab=97.69 E-value=0.00015 Score=51.39 Aligned_cols=63 Identities=14% Similarity=0.121 Sum_probs=42.5
Q ss_pred EEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccC---C---hHHHHHHcCCCccCeEEEEeecccceec
Q 030523 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK---V---SKDLVKRGNISKMPTIQVIFFFPFYFTF 168 (175)
Q Consensus 101 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~---~---~~~l~~~~~I~~~Pt~~~f~~~~~~~~~ 168 (175)
++.|..+|||+|+.....|++..-+. + .+-.+|+++ . .+++.+..|...+|++ |..+...|.+
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~-~--~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I--fI~g~~iGG~ 83 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKR-G--AYEIVDIKEFKPENELRDYFEQITGGRTVPRI--FFGKTSIGGY 83 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCc-C--CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEE--EECCEEEeCh
Confidence 66699999999999999988764332 2 344455554 2 2235666788999998 4455555554
No 160
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.68 E-value=0.00019 Score=47.95 Aligned_cols=60 Identities=22% Similarity=0.399 Sum_probs=46.0
Q ss_pred EEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCCh-------------------------------HHHHHHcC
Q 030523 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS-------------------------------KDLVKRGN 149 (175)
Q Consensus 101 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-------------------------------~~l~~~~~ 149 (175)
++.|+.+.|++|..+.+.++++.....+++.+....+.-.. ..++.++|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 46799999999999999999998666667777766542211 12567889
Q ss_pred CCccCeEEEEe
Q 030523 150 ISKMPTIQVIF 160 (175)
Q Consensus 150 I~~~Pt~~~f~ 160 (175)
+.++||+++.-
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 99999999865
No 161
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.60 E-value=0.00021 Score=46.47 Aligned_cols=50 Identities=16% Similarity=0.373 Sum_probs=38.8
Q ss_pred EEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHH---HcCCCccCeEEE
Q 030523 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVK---RGNISKMPTIQV 158 (175)
Q Consensus 102 V~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~---~~~I~~~Pt~~~ 158 (175)
..|..++|+.|+.....|++ .++.+-.+|+++++. ..+ +.+...+|++++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~------~~i~~~~~di~~~~~-~~~~~~~~g~~~vP~v~~ 54 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE------HGIAFEEINIDEQPE-AIDYVKAQGFRQVPVIVA 54 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH------CCCceEEEECCCCHH-HHHHHHHcCCcccCEEEE
Confidence 56888999999999998875 357788889988764 333 348889999865
No 162
>PRK15000 peroxidase; Provisional
Probab=97.59 E-value=0.00027 Score=55.32 Aligned_cols=44 Identities=11% Similarity=0.132 Sum_probs=38.8
Q ss_pred CCCcEEEEEEc-CCChhhhhchHHHHHHHHHhC-CCeEEEEEEccC
Q 030523 96 LSQPILIDWMA-SWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNK 139 (175)
Q Consensus 96 ~~k~vlV~F~a-~wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~ 139 (175)
.+++++|+||+ +||+.|....+.+.++.++++ .++.++.|++|.
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~ 78 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDS 78 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 57899999999 599999999999999999985 468899998875
No 163
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.58 E-value=0.00059 Score=51.47 Aligned_cols=78 Identities=21% Similarity=0.413 Sum_probs=65.6
Q ss_pred EEcCChhhHHHHHHHhhcCCCc-EEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCC--ccC
Q 030523 78 EPINDSDHLDQILLRAQELSQP-ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS--KMP 154 (175)
Q Consensus 78 ~~i~s~~~f~~~l~~~~~~~k~-vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~--~~P 154 (175)
.+++ .+++..+. ..+.+ +++.|..........+...+.++++++++++.|+.+|++..++ +++.+++. .+|
T Consensus 80 ~~~t-~~n~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~-~~~~~~i~~~~~P 153 (184)
T PF13848_consen 80 PELT-PENFEKLF----SSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPR-LLKYFGIDEDDLP 153 (184)
T ss_dssp EEES-TTHHHHHH----STSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHH-HHHHTTTTTSSSS
T ss_pred cccc-hhhHHHHh----cCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHH-HHHHcCCCCccCC
Confidence 3444 45888888 66666 7888877778888999999999999998899999999998887 89999998 899
Q ss_pred eEEEEee
Q 030523 155 TIQVIFF 161 (175)
Q Consensus 155 t~~~f~~ 161 (175)
+++++..
T Consensus 154 ~~vi~~~ 160 (184)
T PF13848_consen 154 ALVIFDS 160 (184)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 9999883
No 164
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.55 E-value=0.00057 Score=47.35 Aligned_cols=71 Identities=14% Similarity=0.196 Sum_probs=47.0
Q ss_pred hhHHHHHHHhhcCCCcEEEEEE----cCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChH---HHHHHcCCCccCeE
Q 030523 84 DHLDQILLRAQELSQPILIDWM----ASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNISKMPTI 156 (175)
Q Consensus 84 ~~f~~~l~~~~~~~k~vlV~F~----a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~l~~~~~I~~~Pt~ 156 (175)
+..++++ ++.+|+|+-. ++|||.|+.....|.+. ++.+..+|++++++ ++.+..+...+|.+
T Consensus 3 ~~v~~~i-----~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~v 71 (97)
T TIGR00365 3 ERIKEQI-----KENPVVLYMKGTPQFPQCGFSARAVQILKAC------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQL 71 (97)
T ss_pred HHHHHHh-----ccCCEEEEEccCCCCCCCchHHHHHHHHHHc------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEE
Confidence 3455555 4456666544 38999999999888764 35677888877653 24455677788987
Q ss_pred EEEeeccccee
Q 030523 157 QVIFFFPFYFT 167 (175)
Q Consensus 157 ~~f~~~~~~~~ 167 (175)
|..+...|-
T Consensus 72 --fi~g~~iGG 80 (97)
T TIGR00365 72 --YVKGEFVGG 80 (97)
T ss_pred --EECCEEEeC
Confidence 444554443
No 165
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.52 E-value=0.00023 Score=46.88 Aligned_cols=60 Identities=15% Similarity=0.222 Sum_probs=42.8
Q ss_pred EEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChH---HHHHHcCCCccCeEEEEeecccceec
Q 030523 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNISKMPTIQVIFFFPFYFTF 168 (175)
Q Consensus 101 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~l~~~~~I~~~Pt~~~f~~~~~~~~~ 168 (175)
++.|+.+||+.|+.....+++. ++.+-.+|++.+++ ++.+..+...+|++ |..+...|.|
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i--~i~g~~igg~ 63 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQI--FIGDVHVGGC 63 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEE--EECCEEEcCh
Confidence 3568899999999999999753 36677778877653 24455578899997 4455555543
No 166
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.52 E-value=0.00022 Score=49.61 Aligned_cols=60 Identities=17% Similarity=0.182 Sum_probs=40.4
Q ss_pred EEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChH------HHHHHcCCCccCeEEEEeecccceec
Q 030523 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK------DLVKRGNISKMPTIQVIFFFPFYFTF 168 (175)
Q Consensus 101 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~------~l~~~~~I~~~Pt~~~f~~~~~~~~~ 168 (175)
++.|..+|||.|+.++..|.+. ++.+-.+|+|..++ ++.+..+...+|.+ |..+...|.+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g~~iGG~ 75 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGGKLVGGL 75 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECCEEEcCH
Confidence 5569999999999999877764 24445666665432 23344467899997 5666666554
No 167
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.51 E-value=0.00038 Score=47.43 Aligned_cols=65 Identities=14% Similarity=0.133 Sum_probs=44.8
Q ss_pred CCCcEEEEEEc----CCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChH---HHHHHcCCCccCeEEEEeecccceec
Q 030523 96 LSQPILIDWMA----SWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNISKMPTIQVIFFFPFYFTF 168 (175)
Q Consensus 96 ~~k~vlV~F~a----~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~l~~~~~I~~~Pt~~~f~~~~~~~~~ 168 (175)
++.+|+|+-.+ +||+.|+.....|++. ++.+-.+|++.+++ ++.+..+-..+|.+ |..+...|-+
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~v--fi~g~~iGG~ 77 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQL------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQL--YVNGELVGGC 77 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEE--EECCEEEeCH
Confidence 44566665433 7999999999888765 36677778877653 24455688899997 5566666543
No 168
>PRK13190 putative peroxiredoxin; Provisional
Probab=97.51 E-value=0.00039 Score=54.40 Aligned_cols=44 Identities=11% Similarity=0.165 Sum_probs=35.4
Q ss_pred CCCcEEE-EEEcCCChhhhhchHHHHHHHHHhC-CCeEEEEEEccC
Q 030523 96 LSQPILI-DWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNK 139 (175)
Q Consensus 96 ~~k~vlV-~F~a~wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~ 139 (175)
.++.++| .|+++||+.|....+.+.++.++++ .++.++.|++|.
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~ 71 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDS 71 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4565555 6899999999999999999998885 368888887764
No 169
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.44 E-value=0.0006 Score=44.20 Aligned_cols=59 Identities=17% Similarity=0.217 Sum_probs=41.3
Q ss_pred EEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChH---HHHHHcCCC-ccCeEEEEeeccccee
Q 030523 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNIS-KMPTIQVIFFFPFYFT 167 (175)
Q Consensus 101 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~l~~~~~I~-~~Pt~~~f~~~~~~~~ 167 (175)
++.|..+||+.|+.....+++. ++.+-.+|++.+++ ++.+..+.. .+|+++ ..+..-|-
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~--i~g~~igg 64 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIF--IGDVHIGG 64 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE--ECCEEEeC
Confidence 5678999999999999888753 46777888887654 233445766 899774 44444443
No 170
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.41 E-value=0.00023 Score=55.19 Aligned_cols=27 Identities=15% Similarity=0.277 Sum_probs=24.0
Q ss_pred cCCCcEEEEEEcCCChhhhhchHHHHH
Q 030523 95 ELSQPILIDWMASWCRKCIYLKPKLEK 121 (175)
Q Consensus 95 ~~~k~vlV~F~a~wC~~C~~~~p~l~~ 121 (175)
.+.+..++.|+.+.|++|+.+.+.+.+
T Consensus 75 ~~~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 75 GNGKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCCCEEEEEEECCCCccHHHHHHHHhh
Confidence 356889999999999999999998876
No 171
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.40 E-value=0.00082 Score=45.01 Aligned_cols=52 Identities=15% Similarity=0.398 Sum_probs=39.9
Q ss_pred EEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHH--HHHcCCCccCeEEE
Q 030523 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDL--VKRGNISKMPTIQV 158 (175)
Q Consensus 101 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l--~~~~~I~~~Pt~~~ 158 (175)
++.|..+||++|+..+..|++ .++.|-.+|++.+++.. .+..+...+|++++
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i 56 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES------RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA 56 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE
Confidence 567889999999999888854 35888899998876521 23457789999864
No 172
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.40 E-value=0.00077 Score=59.75 Aligned_cols=60 Identities=13% Similarity=0.207 Sum_probs=53.2
Q ss_pred CCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEEE
Q 030523 97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQV 158 (175)
Q Consensus 97 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~ 158 (175)
++.-+-.|.++.||+|......+++++... +++..-.+|....++ ++++|+|.++|++++
T Consensus 117 ~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~-p~i~~~~id~~~~~~-~~~~~~v~~VP~~~i 176 (515)
T TIGR03140 117 GPLHFETYVSLTCQNCPDVVQALNQMALLN-PNISHTMIDGALFQD-EVEALGIQGVPAVFL 176 (515)
T ss_pred CCeEEEEEEeCCCCCCHHHHHHHHHHHHhC-CCceEEEEEchhCHH-HHHhcCCcccCEEEE
Confidence 344477899999999999999999998887 789999999999997 899999999999974
No 173
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.39 E-value=0.00082 Score=43.65 Aligned_cols=58 Identities=17% Similarity=0.281 Sum_probs=42.5
Q ss_pred EEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChH---HHHHHcCCCccCeEEEEeecccce
Q 030523 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNISKMPTIQVIFFFPFYF 166 (175)
Q Consensus 101 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~l~~~~~I~~~Pt~~~f~~~~~~~ 166 (175)
++.|+.+||+.|+.....+++. ++.+-.+|++++++ ++.+..+-..+|++ |..+...|
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v--~i~~~~iG 63 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK------GLPYVEINIDIFPERKAELEERTGSSVVPQI--FFNEKLVG 63 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEe
Confidence 5678999999999999888863 46777888887653 35566677888987 44444444
No 174
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.001 Score=46.88 Aligned_cols=71 Identities=15% Similarity=0.228 Sum_probs=47.5
Q ss_pred hhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHc----CCCccCeEEEE
Q 030523 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRG----NISKMPTIQVI 159 (175)
Q Consensus 84 ~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~----~I~~~Pt~~~f 159 (175)
+..++++ ...+|+ .|..+||+.|+.++..|.+ ++....++.+|-+.+..++.+.+ +-+.+|.+ |
T Consensus 5 ~~v~~~i-----~~~~VV-ifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~v--F 72 (104)
T KOG1752|consen 5 AKVRKMI-----SENPVV-IFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNV--F 72 (104)
T ss_pred HHHHHHh-----hcCCEE-EEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEE--E
Confidence 3456666 344544 4999999999998877776 54567888888887664454333 45678875 4
Q ss_pred eecccce
Q 030523 160 FFFPFYF 166 (175)
Q Consensus 160 ~~~~~~~ 166 (175)
..+++.|
T Consensus 73 I~Gk~iG 79 (104)
T KOG1752|consen 73 IGGKFIG 79 (104)
T ss_pred ECCEEEc
Confidence 4555444
No 175
>PRK13599 putative peroxiredoxin; Provisional
Probab=97.38 E-value=0.00098 Score=52.77 Aligned_cols=45 Identities=16% Similarity=0.233 Sum_probs=37.5
Q ss_pred CCCc-EEEEEEcCCChhhhhchHHHHHHHHHhC-CCeEEEEEEccCC
Q 030523 96 LSQP-ILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKV 140 (175)
Q Consensus 96 ~~k~-vlV~F~a~wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~ 140 (175)
.++. +|+.|+++||+.|....+.+.++.++++ .++.++.|++|..
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~ 73 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQV 73 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCH
Confidence 3455 4678999999999999999999999984 4689999988763
No 176
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=97.32 E-value=0.00077 Score=52.82 Aligned_cols=41 Identities=12% Similarity=0.424 Sum_probs=33.5
Q ss_pred CCcEEEEEEcCCChhhhhchHHH---HHHHHHhCCCeEEEEEEc
Q 030523 97 SQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDV 137 (175)
Q Consensus 97 ~k~vlV~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~ 137 (175)
+++.||+|+.-.||+|..+.|.+ +.+.+.+.+++.++++.+
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 80 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHV 80 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEecc
Confidence 46779999999999999999876 788888876777766544
No 177
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.29 E-value=0.0046 Score=45.12 Aligned_cols=83 Identities=20% Similarity=0.334 Sum_probs=66.1
Q ss_pred eeEEcCChhhHHHHHHHhhcCCCcEEEEEEcC--CCh-hh-hhchHHHHHHHHHhCCC-eEEEEEEccCChHHHHHHcCC
Q 030523 76 ELEPINDSDHLDQILLRAQELSQPILIDWMAS--WCR-KC-IYLKPKLEKLAAEFDTK-LKFYYVDVNKVSKDLVKRGNI 150 (175)
Q Consensus 76 ~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~--wC~-~C-~~~~p~l~~l~~~~~~~-v~~~~vd~d~~~~~l~~~~~I 150 (175)
++.++++.+.+++.. ..++..+|-|.-. .|. .+ ......+.+++++++++ +.|+.+|.+.... +.+.|||
T Consensus 3 ~~~~l~~~~~~~~~C----~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~-~~~~fgl 77 (130)
T cd02983 3 EIIELTSEDVFEETC----EEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLD-LEEALNI 77 (130)
T ss_pred ceEEecCHHHHHhhc----cCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHH-HHHHcCC
Confidence 577888888888877 4567888888542 232 23 35678899999999988 9999999999987 8999999
Q ss_pred C--ccCeEEEEeecc
Q 030523 151 S--KMPTIQVIFFFP 163 (175)
Q Consensus 151 ~--~~Pt~~~f~~~~ 163 (175)
. ++|+++++..-.
T Consensus 78 ~~~~~P~v~i~~~~~ 92 (130)
T cd02983 78 GGFGYPAMVAINFRK 92 (130)
T ss_pred CccCCCEEEEEeccc
Confidence 5 499999887765
No 178
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.21 E-value=0.00059 Score=54.64 Aligned_cols=30 Identities=13% Similarity=0.292 Sum_probs=25.9
Q ss_pred cCCCcEEEEEEcCCChhhhhchHHHHHHHH
Q 030523 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAA 124 (175)
Q Consensus 95 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~ 124 (175)
.+++.+++.|.-+.||+|+.+.+.+.++.+
T Consensus 105 ~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~ 134 (232)
T PRK10877 105 PQEKHVITVFTDITCGYCHKLHEQMKDYNA 134 (232)
T ss_pred CCCCEEEEEEECCCChHHHHHHHHHHHHhc
Confidence 457788999999999999999999887754
No 179
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.20 E-value=0.0014 Score=42.45 Aligned_cols=58 Identities=12% Similarity=0.127 Sum_probs=41.0
Q ss_pred EEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCCh--HHHHHHcCCCccCeEEEEeecccce
Q 030523 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS--KDLVKRGNISKMPTIQVIFFFPFYF 166 (175)
Q Consensus 101 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~--~~l~~~~~I~~~Pt~~~f~~~~~~~ 166 (175)
++.|..+||+.|...+..|++. ++.+..+|++.+. ..+.+..+...+|.+ |..+...|
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~~ig 62 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN------GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGELIG 62 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCEEEe
Confidence 6779999999999998888753 4667777877654 224455688999997 34444333
No 180
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.19 E-value=0.00085 Score=48.90 Aligned_cols=42 Identities=21% Similarity=0.430 Sum_probs=34.3
Q ss_pred cCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEc
Q 030523 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137 (175)
Q Consensus 95 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~ 137 (175)
...+++|+.|+.++||+|+.+.|.+.++..++ +++.+...+.
T Consensus 3 ~~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~-~~~~~~~~~~ 44 (154)
T cd03023 3 PNGDVTIVEFFDYNCGYCKKLAPELEKLLKED-PDVRVVFKEF 44 (154)
T ss_pred CCCCEEEEEEECCCChhHHHhhHHHHHHHHHC-CCceEEEEeC
Confidence 35678899999999999999999999988777 5666665543
No 181
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.19 E-value=0.0038 Score=42.37 Aligned_cols=73 Identities=11% Similarity=0.194 Sum_probs=57.1
Q ss_pred EEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEE
Q 030523 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQ 157 (175)
Q Consensus 78 ~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~ 157 (175)
..|++.+++++.+ ..+++++|-|+.++|+ .....+.+++..+++++.|+.++ +++ +++++++. .|+++
T Consensus 2 ~~i~s~~~l~~~~----~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~-~~~~~~~~-~~~i~ 69 (97)
T cd02981 2 KELTSKEELEKFL----DKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKE-VAKKLKVK-PGSVV 69 (97)
T ss_pred eecCCHHHHHHHh----ccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHH-HHHHcCCC-CCceE
Confidence 4677888899887 6889999999999887 56778888998887778887655 344 77778775 48898
Q ss_pred EEeec
Q 030523 158 VIFFF 162 (175)
Q Consensus 158 ~f~~~ 162 (175)
+|.-+
T Consensus 70 l~~~~ 74 (97)
T cd02981 70 LFKPF 74 (97)
T ss_pred EeCCc
Confidence 88654
No 182
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.17 E-value=0.00099 Score=47.11 Aligned_cols=80 Identities=15% Similarity=0.137 Sum_probs=57.4
Q ss_pred hhhHHHHHHHhhcCCCcEEEEEEcCCChh---hhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEEEE
Q 030523 83 SDHLDQILLRAQELSQPILIDWMASWCRK---CIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQVI 159 (175)
Q Consensus 83 ~~~f~~~l~~~~~~~k~vlV~F~a~wC~~---C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~f 159 (175)
.+++++.+ ......++ |.+..|.. +....=++-++.+.+.+.+...-++-+.+. ++..+|++...|++++|
T Consensus 16 ~~~ld~~l----~~~~~~vl-f~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~-~L~~r~gv~~~PaLvf~ 89 (107)
T PF07449_consen 16 ADTLDAFL----AAPGDAVL-FFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAER-ALAARFGVRRWPALVFF 89 (107)
T ss_dssp CCCHHHHH----HCCSCEEE-EESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHH-HHHHHHT-TSSSEEEEE
T ss_pred hhhHHHHH----hCCCcEEE-EECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHH-HHHHHhCCccCCeEEEE
Confidence 56788888 45556555 55545544 444444778888888777888777755555 49999999999999999
Q ss_pred eecccceec
Q 030523 160 FFFPFYFTF 168 (175)
Q Consensus 160 ~~~~~~~~~ 168 (175)
..+.+-|..
T Consensus 90 R~g~~lG~i 98 (107)
T PF07449_consen 90 RDGRYLGAI 98 (107)
T ss_dssp ETTEEEEEE
T ss_pred ECCEEEEEe
Confidence 998887764
No 183
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0015 Score=43.69 Aligned_cols=52 Identities=23% Similarity=0.461 Sum_probs=38.3
Q ss_pred EEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCCh----HHHHHHc-CCCccCeEEE
Q 030523 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS----KDLVKRG-NISKMPTIQV 158 (175)
Q Consensus 101 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~----~~l~~~~-~I~~~Pt~~~ 158 (175)
++.|..++||+|+..+..|.+ .++.+..+|++... ++..++. |.+.+|.+++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~------~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDR------KGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHH------cCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 567889999999999988873 35677777776655 2234444 7899998764
No 184
>PRK13189 peroxiredoxin; Provisional
Probab=97.14 E-value=0.0026 Score=50.51 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=36.3
Q ss_pred CCC-cEEEEEEcCCChhhhhchHHHHHHHHHhC-CCeEEEEEEccCC
Q 030523 96 LSQ-PILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKV 140 (175)
Q Consensus 96 ~~k-~vlV~F~a~wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~ 140 (175)
.++ .+|+.|+++||+.|....+.+.++.++++ .++.++.|++|..
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~ 80 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQV 80 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCH
Confidence 455 44557789999999999999999999884 4688888888753
No 185
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.13 E-value=0.0019 Score=50.45 Aligned_cols=89 Identities=19% Similarity=0.233 Sum_probs=70.6
Q ss_pred eeeEEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccC
Q 030523 75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMP 154 (175)
Q Consensus 75 ~~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~P 154 (175)
-++.+|+..+-..++.. + ..+-.|+|..|...-+.|+-+.-.++.++.+| +.++|+++-.+.+- ..|-=..+|
T Consensus 91 G~V~~ISg~dyv~EVT~-A-s~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kf-p~iKFVki~at~cI----pNYPe~nlP 163 (240)
T KOG3170|consen 91 GEVFPISGPDYVKEVTK-A-SEGVWVVVHLYKQGVPLCALLSHHLQSLACKF-PQIKFVKIPATTCI----PNYPESNLP 163 (240)
T ss_pred cceeeccchHHHHHHHh-c-cCccEEEEEeeccccHHHHHHHHHHHHHhhcC-CcceEEeccccccc----CCCcccCCC
Confidence 45788877755555544 4 47888999999999999999999999999999 89999998776642 235567899
Q ss_pred eEEEEeecccceeccc
Q 030523 155 TIQVIFFFPFYFTFLF 170 (175)
Q Consensus 155 t~~~f~~~~~~~~~~~ 170 (175)
|+++|.-|..-++++-
T Consensus 164 Tl~VY~~G~lk~q~ig 179 (240)
T KOG3170|consen 164 TLLVYHHGALKKQMIG 179 (240)
T ss_pred eEEEeecchHHhheeh
Confidence 9999999887666653
No 186
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.07 E-value=0.0016 Score=43.46 Aligned_cols=55 Identities=25% Similarity=0.435 Sum_probs=46.2
Q ss_pred EEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEEEE
Q 030523 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQVI 159 (175)
Q Consensus 101 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~f 159 (175)
|+.|..+.|+-|..+...++++.... .+.+-.||++++++ +.++|+. .+|.+.+=
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~--~~~l~~vDI~~d~~-l~~~Y~~-~IPVl~~~ 56 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF--PFELEEVDIDEDPE-LFEKYGY-RIPVLHID 56 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS--TCEEEEEETTTTHH-HHHHSCT-STSEEEET
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc--CceEEEEECCCCHH-HHHHhcC-CCCEEEEc
Confidence 68899999999999999999876554 49999999999886 9999996 69986653
No 187
>PRK10638 glutaredoxin 3; Provisional
Probab=96.92 E-value=0.0039 Score=41.51 Aligned_cols=51 Identities=18% Similarity=0.320 Sum_probs=38.1
Q ss_pred EEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChH---HHHHHcCCCccCeEE
Q 030523 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNISKMPTIQ 157 (175)
Q Consensus 101 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~l~~~~~I~~~Pt~~ 157 (175)
++.|..+||+.|+.....+++. ++.+..+|++.+++ ++.+..+...+|+++
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~ 57 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIF 57 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence 5678889999999999888763 45667788877653 345556788899873
No 188
>PRK10824 glutaredoxin-4; Provisional
Probab=96.88 E-value=0.0051 Score=44.06 Aligned_cols=70 Identities=19% Similarity=0.240 Sum_probs=42.4
Q ss_pred hhHHHHHHHhhcCCCcEEEEEEc----CCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChH---HHHHHcCCCccCeE
Q 030523 84 DHLDQILLRAQELSQPILIDWMA----SWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNISKMPTI 156 (175)
Q Consensus 84 ~~f~~~l~~~~~~~k~vlV~F~a----~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~l~~~~~I~~~Pt~ 156 (175)
+..++++ +..+|+|+--. ||||.|+.....|.++. +.+..+|++.+++ .+.+.-+...+|.+
T Consensus 6 ~~v~~~I-----~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~------i~~~~idi~~d~~~~~~l~~~sg~~TVPQI 74 (115)
T PRK10824 6 EKIQRQI-----AENPILLYMKGSPKLPSCGFSAQAVQALSACG------ERFAYVDILQNPDIRAELPKYANWPTFPQL 74 (115)
T ss_pred HHHHHHH-----hcCCEEEEECCCCCCCCCchHHHHHHHHHHcC------CCceEEEecCCHHHHHHHHHHhCCCCCCeE
Confidence 4456666 44566664433 69999999999887752 4444567766653 23344466667764
Q ss_pred EEEeecccce
Q 030523 157 QVIFFFPFYF 166 (175)
Q Consensus 157 ~~f~~~~~~~ 166 (175)
|..+..-|
T Consensus 75 --FI~G~~IG 82 (115)
T PRK10824 75 --WVDGELVG 82 (115)
T ss_pred --EECCEEEc
Confidence 44444444
No 189
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=96.85 E-value=0.0023 Score=52.22 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=37.0
Q ss_pred CCCcEEEEEE-cCCChhhhhchHHHHHHHHHhC-CCeEEEEEEccC
Q 030523 96 LSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNK 139 (175)
Q Consensus 96 ~~k~vlV~F~-a~wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~ 139 (175)
.++++|+.|| ++||+.|....+.+.++.++++ .++.++.|.+|.
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds 142 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDS 142 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 5667888887 8999999999999999999885 468888888765
No 190
>PRK13191 putative peroxiredoxin; Provisional
Probab=96.78 E-value=0.0024 Score=50.50 Aligned_cols=45 Identities=11% Similarity=0.103 Sum_probs=37.0
Q ss_pred CCCcEEE-EEEcCCChhhhhchHHHHHHHHHhC-CCeEEEEEEccCC
Q 030523 96 LSQPILI-DWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKV 140 (175)
Q Consensus 96 ~~k~vlV-~F~a~wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~ 140 (175)
.+++++| .|+++||+.|....+.+.++.++++ .++.++.|++|..
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~ 78 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSN 78 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCH
Confidence 4555554 7899999999999999999999984 4688999988754
No 191
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=96.71 E-value=0.0026 Score=49.75 Aligned_cols=41 Identities=27% Similarity=0.360 Sum_probs=34.7
Q ss_pred cEEEEEEcCCChhhhhchHHHHHHHHHhC-CCeEEEEEEccC
Q 030523 99 PILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNK 139 (175)
Q Consensus 99 ~vlV~F~a~wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~ 139 (175)
.+|+.|+++||+.|....+.+.++.++++ .++.++.|++|.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~ 69 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDS 69 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 45568899999999999999999999884 368888888764
No 192
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=96.60 E-value=0.018 Score=40.79 Aligned_cols=73 Identities=18% Similarity=0.195 Sum_probs=58.5
Q ss_pred hhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHH---hCCCeEEEEEEccCChHHHHHHcCCCc--cCeEEE
Q 030523 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAE---FDTKLKFYYVDVNKVSKDLVKRGNISK--MPTIQV 158 (175)
Q Consensus 84 ~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~---~~~~v~~~~vd~d~~~~~l~~~~~I~~--~Pt~~~ 158 (175)
++.+.+. .++.+..+.|+.+ ..-..+.+.+.+++++ +++++.|+.+|.+.... ..+.+|++. +|.+.+
T Consensus 7 e~~~~~~----~~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~-~~~~fgl~~~~~P~i~i 79 (111)
T cd03072 7 ENAEELT----EEGLPFLILFHDK--DDLESLKEFKQAVARQLISEKGAINFLTADGDKFRH-PLLHLGKTPADLPVIAI 79 (111)
T ss_pred ccHHHHh----cCCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhh-HHHHcCCCHhHCCEEEE
Confidence 4566666 6777777777722 2346788999999999 98999999999999876 789999997 999998
Q ss_pred Eeecc
Q 030523 159 IFFFP 163 (175)
Q Consensus 159 f~~~~ 163 (175)
.....
T Consensus 80 ~~~~~ 84 (111)
T cd03072 80 DSFRH 84 (111)
T ss_pred Ecchh
Confidence 87754
No 193
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.0068 Score=50.25 Aligned_cols=79 Identities=19% Similarity=0.419 Sum_probs=64.3
Q ss_pred EEcCChhhHHHHHHHhhcCCCcEEEEEEc----CCChhhhhchHHHHHHHHHhC--------CCeEEEEEEccCChHHHH
Q 030523 78 EPINDSDHLDQILLRAQELSQPILIDWMA----SWCRKCIYLKPKLEKLAAEFD--------TKLKFYYVDVNKVSKDLV 145 (175)
Q Consensus 78 ~~i~s~~~f~~~l~~~~~~~k~vlV~F~a----~wC~~C~~~~p~l~~l~~~~~--------~~v~~~~vd~d~~~~~l~ 145 (175)
..++ .+.|...+... ..+-.++|.|.| ..|.-|+....++.-++..+. .++=|..||.|+.++ +.
T Consensus 43 I~~n-~d~~~~~v~~~-prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~-~F 119 (331)
T KOG2603|consen 43 IRMN-DDKFSKFVRPP-PRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQ-VF 119 (331)
T ss_pred EEec-CcchhhhccCC-CCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHH-HH
Confidence 3443 45888888632 566678888887 489999999999999988752 157899999999997 89
Q ss_pred HHcCCCccCeEEEE
Q 030523 146 KRGNISKMPTIQVI 159 (175)
Q Consensus 146 ~~~~I~~~Pt~~~f 159 (175)
+.+++..+|++++|
T Consensus 120 q~l~ln~~P~l~~f 133 (331)
T KOG2603|consen 120 QQLNLNNVPHLVLF 133 (331)
T ss_pred HHhcccCCCeEEEe
Confidence 99999999999998
No 194
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.47 E-value=0.013 Score=47.46 Aligned_cols=39 Identities=10% Similarity=0.156 Sum_probs=29.7
Q ss_pred cCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEE
Q 030523 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYV 135 (175)
Q Consensus 95 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v 135 (175)
.+.+.+|+.|.-+.||+|+.+.+.+.++.+. +++.+..+
T Consensus 115 ~~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g~V~v~~i 153 (251)
T PRK11657 115 ADAPRIVYVFADPNCPYCKQFWQQARPWVDS--GKVQLRHI 153 (251)
T ss_pred CCCCeEEEEEECCCChhHHHHHHHHHHHhhc--CceEEEEE
Confidence 4567789999999999999999988876654 34555444
No 195
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=96.45 E-value=0.0091 Score=43.99 Aligned_cols=44 Identities=23% Similarity=0.428 Sum_probs=37.9
Q ss_pred cCCCcEEEEEEcCCChhhhhchHHHHHHHHHh--CCCeEEEEEEcc
Q 030523 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEF--DTKLKFYYVDVN 138 (175)
Q Consensus 95 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~--~~~v~~~~vd~d 138 (175)
...+++|+.|+...||+|+.+.+.+.++.+++ .+++.+...++.
T Consensus 10 ~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~ 55 (162)
T PF13462_consen 10 PDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVP 55 (162)
T ss_dssp TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESS
T ss_pred CCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcc
Confidence 35678899999999999999999999999998 778999999873
No 196
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=96.43 E-value=0.0065 Score=47.26 Aligned_cols=44 Identities=5% Similarity=0.099 Sum_probs=37.2
Q ss_pred CCCcEEEEEEc-CCChhhhhchHHHHHHHHHhC-CCeEEEEEEccC
Q 030523 96 LSQPILIDWMA-SWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNK 139 (175)
Q Consensus 96 ~~k~vlV~F~a-~wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~ 139 (175)
.+++++|+||+ +||+.|....+.+.++.+++. .++.++.|++|.
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~ 80 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDS 80 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCC
Confidence 46789999995 889999999999999999884 368899988874
No 197
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.40 E-value=0.021 Score=51.22 Aligned_cols=72 Identities=21% Similarity=0.161 Sum_probs=58.0
Q ss_pred hHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEEEEe
Q 030523 85 HLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQVIF 160 (175)
Q Consensus 85 ~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~f~ 160 (175)
++++.+.. -.+...++.|+.+.|..|..+...++++++.- +++.+...|..++.+ ++++|+|...|++.++-
T Consensus 356 ~l~~~~~~--l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s-~~i~~~~~~~~~~~~-~~~~~~v~~~P~~~i~~ 427 (555)
T TIGR03143 356 QLVGIFGR--LENPVTLLLFLDGSNEKSAELQSFLGEFASLS-EKLNSEAVNRGEEPE-SETLPKITKLPTVALLD 427 (555)
T ss_pred HHHHHHHh--cCCCEEEEEEECCCchhhHHHHHHHHHHHhcC-CcEEEEEeccccchh-hHhhcCCCcCCEEEEEe
Confidence 46666642 24444677888889999999999999998654 789998889888776 89999999999999984
No 198
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=96.36 E-value=0.0066 Score=45.53 Aligned_cols=41 Identities=24% Similarity=0.506 Sum_probs=34.8
Q ss_pred CCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEE
Q 030523 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVD 136 (175)
Q Consensus 96 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd 136 (175)
..++.|+.|+...||+|+.+.+.+.++.+++.+++.+..+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~ 54 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVP 54 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcC
Confidence 56889999999999999999999999999886666665444
No 199
>PTZ00062 glutaredoxin; Provisional
Probab=96.22 E-value=0.024 Score=44.57 Aligned_cols=64 Identities=14% Similarity=0.093 Sum_probs=41.1
Q ss_pred CCCcEEEEEE----cCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChH---HHHHHcCCCccCeEEEEeeccccee
Q 030523 96 LSQPILIDWM----ASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNISKMPTIQVIFFFPFYFT 167 (175)
Q Consensus 96 ~~k~vlV~F~----a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~l~~~~~I~~~Pt~~~f~~~~~~~~ 167 (175)
+..+|+|+-- .|||+.|+.+...|.+. ++.+..+|++++++ .+.+..+...+|.+. ..+...|.
T Consensus 111 ~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVf--I~G~~IGG 181 (204)
T PTZ00062 111 RNHKILLFMKGSKTFPFCRFSNAVVNMLNSS------GVKYETYNIFEDPDLREELKVYSNWPTYPQLY--VNGELIGG 181 (204)
T ss_pred hcCCEEEEEccCCCCCCChhHHHHHHHHHHc------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEE--ECCEEEcC
Confidence 4566666443 27999999998888753 46677888887653 233444666777654 44555443
No 200
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=96.10 E-value=0.016 Score=50.20 Aligned_cols=60 Identities=15% Similarity=0.153 Sum_probs=42.7
Q ss_pred EEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHH--HHHH---------cCCCccCeEEEEeecccceec
Q 030523 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD--LVKR---------GNISKMPTIQVIFFFPFYFTF 168 (175)
Q Consensus 101 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~--l~~~---------~~I~~~Pt~~~f~~~~~~~~~ 168 (175)
|+.|..+|||+|+..+..+.+. ++.+-.+|+++.+.. +.++ .|...+|++++ .++..|.|
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~igGf 74 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHIGGY 74 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCEEEeCc
Confidence 6779999999999999888763 477888899876631 2222 36788999854 45555544
No 201
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=95.97 E-value=0.041 Score=39.00 Aligned_cols=51 Identities=20% Similarity=0.295 Sum_probs=43.3
Q ss_pred hhhhhchHHHHHHHHHhC-CCeEEEEEEccCChHHHHHHcCCCc----cCeEEEEee
Q 030523 110 RKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVSKDLVKRGNISK----MPTIQVIFF 161 (175)
Q Consensus 110 ~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~~~l~~~~~I~~----~Pt~~~f~~ 161 (175)
..-..+...+.+++++++ +++.|+.+|.++... ..+.+|+.. +|++.++-.
T Consensus 31 ~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~-~l~~fgl~~~~~~~P~~~i~~~ 86 (111)
T cd03073 31 KGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSH-ELEEFGLDFSGGEKPVVAIRTA 86 (111)
T ss_pred hHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHH-HHHHcCCCcccCCCCEEEEEeC
Confidence 444678899999999998 699999999998876 788999985 999998764
No 202
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=95.86 E-value=0.05 Score=45.94 Aligned_cols=80 Identities=19% Similarity=0.167 Sum_probs=53.8
Q ss_pred eEEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhch------HHHHHHHHHh--CCCeEEEEEEccCChHHHHHHc
Q 030523 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLK------PKLEKLAAEF--DTKLKFYYVDVNKVSKDLVKRG 148 (175)
Q Consensus 77 ~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~------p~l~~l~~~~--~~~v~~~~vd~d~~~~~l~~~~ 148 (175)
+..++ ..+|++++ ++.+.++|+|+.|- +.-+... ..+-+++.+. ..++.|+.||..++.. +++++
T Consensus 36 Vi~Ln-eKNfk~~l----Kkyd~l~l~yh~p~-~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~k-lAKKL 108 (383)
T PF01216_consen 36 VIDLN-EKNFKRAL----KKYDVLVLYYHEPV-ESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAK-LAKKL 108 (383)
T ss_dssp CEEE--TTTHHHHH----HH-SEEEEEEE--S-TSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHH-HHHHH
T ss_pred eEEcc-hhHHHHHH----HhhcEEEEEEecCC-ccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHH-HHHhc
Confidence 34443 56999999 57788888898876 3333332 2223344333 3579999999999996 99999
Q ss_pred CCCccCeEEEEeecc
Q 030523 149 NISKMPTIQVIFFFP 163 (175)
Q Consensus 149 ~I~~~Pt~~~f~~~~ 163 (175)
|+...+++.+|+.+-
T Consensus 109 gv~E~~SiyVfkd~~ 123 (383)
T PF01216_consen 109 GVEEEGSIYVFKDGE 123 (383)
T ss_dssp T--STTEEEEEETTE
T ss_pred CccccCcEEEEECCc
Confidence 999999999998653
No 203
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=95.58 E-value=0.08 Score=37.07 Aligned_cols=81 Identities=17% Similarity=0.155 Sum_probs=58.9
Q ss_pred EEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccC-ChHHHHHHcCCC----c
Q 030523 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK-VSKDLVKRGNIS----K 152 (175)
Q Consensus 78 ~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~-~~~~l~~~~~I~----~ 152 (175)
..|++..+|.+++ .....|+|.|..+-- .-......+.++++..++.-.++.|||.. +...||+++.|. -
T Consensus 4 e~i~d~KdfKKLL----RTr~NVLvLy~ks~k-~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp 78 (112)
T cd03067 4 EDISDHKDFKKLL----RTRNNVLVLYSKSAK-SAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKP 78 (112)
T ss_pred ccccchHHHHHHH----hhcCcEEEEEecchh-hHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCC
Confidence 4577888999999 677888888877643 33344457788888888888999999976 334599999998 5
Q ss_pred cCeEE-EEeecc
Q 030523 153 MPTIQ-VIFFFP 163 (175)
Q Consensus 153 ~Pt~~-~f~~~~ 163 (175)
-|..+ =|+.|+
T Consensus 79 ~~~~LkHYKdG~ 90 (112)
T cd03067 79 KPVELKHYKDGD 90 (112)
T ss_pred CcchhhcccCCC
Confidence 55444 344443
No 204
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=0.056 Score=49.23 Aligned_cols=71 Identities=17% Similarity=0.184 Sum_probs=50.9
Q ss_pred hhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHH-H--HHHHHHhCCCeEEEEEEccCChHHHHHHcC--------CC
Q 030523 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPK-L--EKLAAEFDTKLKFYYVDVNKVSKDLVKRGN--------IS 151 (175)
Q Consensus 83 ~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~-l--~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~--------I~ 151 (175)
.+.|.++- ..+|||++....+||--|+.|... + .++++-++.++.-++||-++-|+ +-+.|. --
T Consensus 33 ~eAf~~A~----~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPD-vD~~Ym~~~q~~tG~G 107 (667)
T COG1331 33 EEAFAKAK----EEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPD-VDSLYMNASQAITGQG 107 (667)
T ss_pred HHHHHHHH----HhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccC-HHHHHHHHHHHhccCC
Confidence 45777776 799999999999999999999832 2 34444454568899999988775 444442 34
Q ss_pred ccCeEEE
Q 030523 152 KMPTIQV 158 (175)
Q Consensus 152 ~~Pt~~~ 158 (175)
+.|-.+|
T Consensus 108 GWPLtVf 114 (667)
T COG1331 108 GWPLTVF 114 (667)
T ss_pred CCceeEE
Confidence 6776554
No 205
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=95.01 E-value=0.12 Score=39.55 Aligned_cols=33 Identities=27% Similarity=0.679 Sum_probs=26.1
Q ss_pred EEEcCCChhhhhchHHHHHHHHHhCCCeEEEEE
Q 030523 103 DWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYV 135 (175)
Q Consensus 103 ~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v 135 (175)
+|..|.|+.|-...|.+.++..+++.++.+-.|
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i 34 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFI 34 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEE
Confidence 589999999999999999999999777666555
No 206
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=94.68 E-value=0.15 Score=33.49 Aligned_cols=57 Identities=21% Similarity=0.276 Sum_probs=46.1
Q ss_pred EEEEEEcCCChhhhhchHHHHHHHHHh-CCCeEEEEEEccCChHHHHHHcCCCccCeEE
Q 030523 100 ILIDWMASWCRKCIYLKPKLEKLAAEF-DTKLKFYYVDVNKVSKDLVKRGNISKMPTIQ 157 (175)
Q Consensus 100 vlV~F~a~wC~~C~~~~p~l~~l~~~~-~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~ 157 (175)
.+..|-+..-+..+.....+.++-+++ ++.+.+=-||+.++|+ +++.++|.++||++
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~-lAe~~~ivAtPtLv 60 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQ-LAEEDKIVATPTLV 60 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHh-HHhhCCEEEechhh
Confidence 344555655577888888888877765 5679999999999997 99999999999975
No 207
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=94.55 E-value=0.44 Score=32.79 Aligned_cols=74 Identities=24% Similarity=0.258 Sum_probs=53.6
Q ss_pred eEEcCChhhHHHHHHHhhc-CCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCe
Q 030523 77 LEPINDSDHLDQILLRAQE-LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPT 155 (175)
Q Consensus 77 ~~~i~s~~~f~~~l~~~~~-~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt 155 (175)
+++|++.+++++++ . .+..++|-|+..--. .....+.+++..+++++.|+ +..... +.+.+++. .|+
T Consensus 2 v~~i~~~~~~e~~~----~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~---~~~~~~-~~~~~~~~-~~~ 69 (102)
T cd03066 2 VEIINSERELQAFE----NIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFF---ATFDSK-VAKKLGLK-MNE 69 (102)
T ss_pred ceEcCCHHHHHHHh----cccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEE---EECcHH-HHHHcCCC-CCc
Confidence 46788899999999 6 677777777766433 35567888888887788885 333444 67777765 799
Q ss_pred EEEEeec
Q 030523 156 IQVIFFF 162 (175)
Q Consensus 156 ~~~f~~~ 162 (175)
+++|.-+
T Consensus 70 i~l~~~~ 76 (102)
T cd03066 70 VDFYEPF 76 (102)
T ss_pred EEEeCCC
Confidence 9998653
No 208
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=94.54 E-value=0.3 Score=33.81 Aligned_cols=70 Identities=9% Similarity=0.127 Sum_probs=51.3
Q ss_pred eEEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeE
Q 030523 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156 (175)
Q Consensus 77 ~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~ 156 (175)
+.+|++.+++++.+ ..++.++|-|+..--. .....+.+++..+++++.|+.. .... +.+.+++ .|++
T Consensus 2 ~~~i~s~~~l~~f~----~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~---~~~~-~~~~~~~--~~~i 68 (104)
T cd03069 2 SVELRTEAEFEKFL----SDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHT---SDKQ-LLEKYGY--GEGV 68 (104)
T ss_pred ccccCCHHHHHHHh----ccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEE---ChHH-HHHhcCC--CCce
Confidence 35678888999988 5677778877766433 4567788888888778888643 3333 7788888 7888
Q ss_pred EEE
Q 030523 157 QVI 159 (175)
Q Consensus 157 ~~f 159 (175)
++|
T Consensus 69 vl~ 71 (104)
T cd03069 69 VLF 71 (104)
T ss_pred EEE
Confidence 888
No 209
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=94.45 E-value=0.7 Score=33.47 Aligned_cols=70 Identities=17% Similarity=0.262 Sum_probs=49.8
Q ss_pred hHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHH-HHh--CCCeEEEEEEccC----ChHHHHHHcCC--CccCe
Q 030523 85 HLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLA-AEF--DTKLKFYYVDVNK----VSKDLVKRGNI--SKMPT 155 (175)
Q Consensus 85 ~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~-~~~--~~~v~~~~vd~d~----~~~~l~~~~~I--~~~Pt 155 (175)
+|++++ ...+.+||.|=... |-=.-...+.+++ +.. .+++-++.|-+.. .+.+|+++|+| ..+|.
T Consensus 13 tFdKvi----~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~fPv 86 (126)
T PF07912_consen 13 TFDKVI----PKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDFPV 86 (126)
T ss_dssp HHHHHG----GGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-SE
T ss_pred ehhhee----ccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccCCE
Confidence 899999 78899999996544 3334455677777 433 3679999998843 23359999999 56899
Q ss_pred EEEEe
Q 030523 156 IQVIF 160 (175)
Q Consensus 156 ~~~f~ 160 (175)
+.+|.
T Consensus 87 ~~LF~ 91 (126)
T PF07912_consen 87 IYLFV 91 (126)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 99998
No 210
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=94.01 E-value=0.21 Score=37.31 Aligned_cols=52 Identities=23% Similarity=0.313 Sum_probs=36.1
Q ss_pred EEEEEcC------CChhhhhchHHHHHHHHHhCCCeEEEEEEccCChH---HHHHHcCC----CccCeEEE
Q 030523 101 LIDWMAS------WCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNI----SKMPTIQV 158 (175)
Q Consensus 101 lV~F~a~------wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~l~~~~~I----~~~Pt~~~ 158 (175)
+|.|+++ +|+.|+.++..|+.+ ++.+-.+|++.+++ +|.+..+- ..+|.+.+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI 66 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV 66 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence 3456666 999999999888764 47788899987653 34454454 56777653
No 211
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=93.51 E-value=0.19 Score=32.04 Aligned_cols=53 Identities=9% Similarity=0.189 Sum_probs=36.2
Q ss_pred EEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEEE
Q 030523 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQV 158 (175)
Q Consensus 102 V~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~ 158 (175)
+.|+.+||+.|+...-.+++.. -.+.+..+|....+.++.+......+|++..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~g----l~~e~~~v~~~~~~~~~~~~np~~~vP~L~~ 54 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAG----ITVELREVELKNKPAEMLAASPKGTVPVLVL 54 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcC----CCcEEEEeCCCCCCHHHHHHCCCCCCCEEEE
Confidence 3578899999998877666542 2456667776544334666666778999863
No 212
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=93.42 E-value=0.29 Score=33.24 Aligned_cols=59 Identities=17% Similarity=0.180 Sum_probs=48.2
Q ss_pred CcEEEEEEcCCChhhhhchHHHHHHHHHh-CCCeEEEEEEccCChHHHHHHcCCCccCeEE
Q 030523 98 QPILIDWMASWCRKCIYLKPKLEKLAAEF-DTKLKFYYVDVNKVSKDLVKRGNISKMPTIQ 157 (175)
Q Consensus 98 k~vlV~F~a~wC~~C~~~~p~l~~l~~~~-~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~ 157 (175)
..++=.|.|..-+..+..-..+.++-+++ .+.+.+=-||+.++|+ +++.++|.++||++
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~-lAE~~~IvATPtLI 62 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQ-LAEEDKILATPTLS 62 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHh-HHhHCCEEEecHHh
Confidence 34555677777888888888888887654 5668888999999997 99999999999965
No 213
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=93.38 E-value=0.26 Score=37.24 Aligned_cols=45 Identities=11% Similarity=0.242 Sum_probs=37.1
Q ss_pred cCCCcEEEEEE-cCCChhhhhchHHHHHHHHHhCC-CeEEEEEEccC
Q 030523 95 ELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNK 139 (175)
Q Consensus 95 ~~~k~vlV~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~ 139 (175)
-.+++||++|| ..++|.|-...-.|.+...+++. ++.++-|..|.
T Consensus 28 ~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds 74 (157)
T COG1225 28 LRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDS 74 (157)
T ss_pred hcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 46779999998 67999999999999888888743 68888888765
No 214
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=93.23 E-value=0.34 Score=36.09 Aligned_cols=43 Identities=19% Similarity=0.238 Sum_probs=31.7
Q ss_pred CCcEEEEE-EcCCChhhhhc-hHHHHHHHHHhC-CCe-EEEEEEccC
Q 030523 97 SQPILIDW-MASWCRKCIYL-KPKLEKLAAEFD-TKL-KFYYVDVNK 139 (175)
Q Consensus 97 ~k~vlV~F-~a~wC~~C~~~-~p~l~~l~~~~~-~~v-~~~~vd~d~ 139 (175)
+++++|.| .+.||+.|... .+.+.+..+++. .++ .++.|..|.
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~ 75 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVND 75 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCC
Confidence 44455545 58999999998 999998888874 355 577777765
No 215
>PHA03075 glutaredoxin-like protein; Provisional
Probab=93.22 E-value=0.12 Score=36.91 Aligned_cols=36 Identities=22% Similarity=0.458 Sum_probs=29.9
Q ss_pred CcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEc
Q 030523 98 QPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137 (175)
Q Consensus 98 k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~ 137 (175)
|.++|.|.-|.|+-|+.....+.++..+| .+.+||+
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY----~ilrVNI 37 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEY----DILRVNI 37 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccc----cEEEEEe
Confidence 56899999999999999999997776655 5777776
No 216
>PRK09301 circadian clock protein KaiB; Provisional
Probab=93.12 E-value=0.33 Score=33.99 Aligned_cols=61 Identities=18% Similarity=0.164 Sum_probs=50.5
Q ss_pred CCCcEEEEEEcCCChhhhhchHHHHHHHHHh-CCCeEEEEEEccCChHHHHHHcCCCccCeEE
Q 030523 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEF-DTKLKFYYVDVNKVSKDLVKRGNISKMPTIQ 157 (175)
Q Consensus 96 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~-~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~ 157 (175)
.+..++=.|.+..-+..+.....+.++-+.+ .+.+.+=-||+.++|+ +++.++|.++||++
T Consensus 4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPe-lAE~~~IvATPTLI 65 (103)
T PRK09301 4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQ-LAEEDKILATPTLA 65 (103)
T ss_pred CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHh-HHhHCCeEEecHHh
Confidence 3456677778888888888888888887654 5668889999999997 99999999999965
No 217
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=91.64 E-value=0.73 Score=32.71 Aligned_cols=71 Identities=15% Similarity=0.190 Sum_probs=43.5
Q ss_pred hhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEEEEee
Q 030523 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQVIFF 161 (175)
Q Consensus 83 ~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~f~~ 161 (175)
.+.+..++.++...+-++++.=..+. .+.+....+.+-...+-.- .++.-+|. +.++|+|+.+||+++-..
T Consensus 10 ~~~L~~l~~~a~~~~~~~V~RG~~~g-----~~~~t~~~~~~l~~~~~~~--~~v~IdP~-~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 10 DASLRNLLKQAERAGVVVVFRGFPDG-----SFKPTAKAIQELLRKDDPC--PGVQIDPR-LFRQYNITAVPAFVVVKD 80 (113)
T ss_pred HHHHHHHHHHHHhCCcEEEEECCCCC-----CHHHHHHHHHHHhhccCCC--cceeEChh-HHhhCCceEcCEEEEEcC
Confidence 45788888777455444443333333 5666655554444221111 44455676 899999999999998776
No 218
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=90.35 E-value=3.5 Score=28.71 Aligned_cols=71 Identities=14% Similarity=0.097 Sum_probs=49.4
Q ss_pred eEEcCChhhHHHHHHHhhcCC-CcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCe
Q 030523 77 LEPINDSDHLDQILLRAQELS-QPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPT 155 (175)
Q Consensus 77 ~~~i~s~~~f~~~l~~~~~~~-k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt 155 (175)
+++|++.++++..+ ... +.++|-|+..--+ .....+.+++..+.+++.|+.. .... +.+++++. .|.
T Consensus 2 v~~i~s~~ele~f~----~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t---~~~~-~~~~~~~~-~~~ 69 (107)
T cd03068 2 SKQLQTLKQVQEFL----RDGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHT---FDSE-IFKSLKVS-PGQ 69 (107)
T ss_pred ceEcCCHHHHHHHH----hcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEE---ChHH-HHHhcCCC-CCc
Confidence 46788899999988 444 6677766665433 4566788888888788888643 3333 77788876 566
Q ss_pred EEEE
Q 030523 156 IQVI 159 (175)
Q Consensus 156 ~~~f 159 (175)
+++|
T Consensus 70 vvl~ 73 (107)
T cd03068 70 LVVF 73 (107)
T ss_pred eEEE
Confidence 7776
No 219
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=90.19 E-value=0.35 Score=33.42 Aligned_cols=32 Identities=16% Similarity=0.183 Sum_probs=24.6
Q ss_pred EEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccC
Q 030523 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139 (175)
Q Consensus 102 V~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~ 139 (175)
..|+.++|+.|+.....+++. ++.+-.+|+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~ 33 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH------GIEYEFIDYLK 33 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCCcEEEeecc
Confidence 468899999999998777653 46666777755
No 220
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=89.77 E-value=0.076 Score=44.09 Aligned_cols=65 Identities=14% Similarity=0.318 Sum_probs=47.9
Q ss_pred cCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEc-cCChHHHHHHcCCCccCeEEEEee
Q 030523 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV-NKVSKDLVKRGNISKMPTIQVIFF 161 (175)
Q Consensus 95 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~-d~~~~~l~~~~~I~~~Pt~~~f~~ 161 (175)
++..++-+.||++||+..+..+|.+.-....+ ..+....++= -..++ +..+|++.+.|++++..-
T Consensus 74 n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~-~~i~h~~vee~~~lps-v~s~~~~~~~ps~~~~n~ 139 (319)
T KOG2640|consen 74 NKNDYVSLLFYASWCPFSRAVRPEFDVRSSLF-SSIQHFAVEESQALPS-VFSSYGIHSEPSNLMLNQ 139 (319)
T ss_pred ccCCcccccchhcccCcccccCcccchhhhhc-cccccccHHHHhhccc-chhccccccCCcceeecc
Confidence 34778999999999999999999998877776 3333333221 12344 789999999999987643
No 221
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=89.56 E-value=0.65 Score=29.29 Aligned_cols=52 Identities=13% Similarity=0.107 Sum_probs=33.9
Q ss_pred EEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEE
Q 030523 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQ 157 (175)
Q Consensus 102 V~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~ 157 (175)
..|+.++|+.|+...-.+++..- ++....+|......++.+......+|++.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi----~~~~~~v~~~~~~~~~~~~~p~~~vP~l~ 53 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGV----SVEIIDVDPDNPPEDLAELNPYGTVPTLV 53 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCC----ccEEEEcCCCCCCHHHHhhCCCCCCCEEE
Confidence 45788999999998877655422 34555566554433355555566889774
No 222
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=89.42 E-value=0.67 Score=37.25 Aligned_cols=43 Identities=14% Similarity=0.359 Sum_probs=37.7
Q ss_pred cCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEc
Q 030523 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137 (175)
Q Consensus 95 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~ 137 (175)
+.++|+|+.|.+-.||+=+.-.+.++++++++.+.+.|+.|-+
T Consensus 100 ~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI 142 (237)
T PF00837_consen 100 KGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYI 142 (237)
T ss_pred cCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhH
Confidence 7899999999999999999999999999999966566766654
No 223
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=89.14 E-value=1.4 Score=35.70 Aligned_cols=60 Identities=17% Similarity=0.120 Sum_probs=41.1
Q ss_pred cCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEEEEeec
Q 030523 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQVIFFF 162 (175)
Q Consensus 95 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~f~~~ 162 (175)
..+|+.+++..+.|||.|...+=.+-....++ +++.+...-.+. .+ .-..+||++|..+.
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrf-Gn~~l~~~~S~~-~d------~~pn~Ptl~F~~~~ 115 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRF-GNFSLEYHYSDP-YD------NYPNTPTLIFNNYT 115 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhc-CCeeeEEeecCc-cc------CCCCCCeEEEecCc
Confidence 68999999999999999998885555555667 555333222222 11 23578999887764
No 224
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=88.19 E-value=0.66 Score=32.41 Aligned_cols=33 Identities=15% Similarity=0.123 Sum_probs=25.0
Q ss_pred EEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCC
Q 030523 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV 140 (175)
Q Consensus 102 V~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~ 140 (175)
..|+.++|+.|+.....+++- ++.+-.+|+.++
T Consensus 2 ~iy~~~~C~~crka~~~L~~~------~i~~~~~di~~~ 34 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR------GVAYTFHDYRKD 34 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc------CCCeEEEecccC
Confidence 568999999999988877653 466667777554
No 225
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=88.18 E-value=0.23 Score=33.38 Aligned_cols=53 Identities=19% Similarity=0.305 Sum_probs=42.3
Q ss_pred EEcCCChhhhhchHHHHHHHHHh-CCCeEEEEEEccCChHHHHHHcCCCccCeEE
Q 030523 104 WMASWCRKCIYLKPKLEKLAAEF-DTKLKFYYVDVNKVSKDLVKRGNISKMPTIQ 157 (175)
Q Consensus 104 F~a~wC~~C~~~~p~l~~l~~~~-~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~ 157 (175)
|-+..-+..+.....+..+.+.+ +..+.+--||+.++|+ +++.++|.++||++
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~-lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPE-LAEEDRIVATPTLI 56 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHS-HHTTTEEECHHHHH
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHh-HHhHCCeeecceEe
Confidence 33444456677777888887764 5679999999999997 99999999999975
No 226
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=88.09 E-value=1.7 Score=31.72 Aligned_cols=72 Identities=19% Similarity=0.176 Sum_probs=44.4
Q ss_pred hhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEEEEeec
Q 030523 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQVIFFF 162 (175)
Q Consensus 83 ~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~f~~~ 162 (175)
.+.+.+++.++.+.+.++++.=.-+. .+.+....+.+-...+-. .++.-+|. +.++|+|+.+|++++-...
T Consensus 11 ~~~Lk~l~~~a~~~g~~~VlRG~~~~-----~~~~T~~~i~~L~~~~~~---~~v~IdP~-lF~~f~I~~VPa~V~~~~~ 81 (130)
T TIGR02742 11 EPLLKQLLDQAEALGAPLVIRGLLDN-----GFKATATRIQSLIKDGGK---SGVQIDPQ-WFKQFDITAVPAFVVVKDG 81 (130)
T ss_pred HHHHHHHHHHHHHhCCeEEEeCCCCC-----CHHHHHHHHHHHHhcCCC---CcEEEChH-HHhhcCceEcCEEEEECCC
Confidence 35778888777566666555544443 234444444333221111 34445676 8999999999999998866
Q ss_pred c
Q 030523 163 P 163 (175)
Q Consensus 163 ~ 163 (175)
.
T Consensus 82 ~ 82 (130)
T TIGR02742 82 L 82 (130)
T ss_pred C
Confidence 3
No 227
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=87.33 E-value=0.78 Score=32.24 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=25.9
Q ss_pred EEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCCh
Q 030523 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS 141 (175)
Q Consensus 102 V~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~ 141 (175)
..|+.++|+.|+.....|++- ++.+-.+|+.+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~ 35 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH------GVDYTAIDIVEEP 35 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCceEEecccCCc
Confidence 458899999999998877652 4677777776543
No 228
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=87.21 E-value=1.1 Score=27.13 Aligned_cols=52 Identities=12% Similarity=0.217 Sum_probs=33.3
Q ss_pred EEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChH-HHHHHcCCCccCeEEE
Q 030523 103 DWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK-DLVKRGNISKMPTIQV 158 (175)
Q Consensus 103 ~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~-~l~~~~~I~~~Pt~~~ 158 (175)
.|+.++|+.|+...-.++... -.+....++.+.... .+.+...-..+|++..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~----i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKG----LPYELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcC----CCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 577889999998877776552 234555555443322 2455567778898764
No 229
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=86.48 E-value=2.8 Score=31.16 Aligned_cols=43 Identities=28% Similarity=0.270 Sum_probs=35.3
Q ss_pred chHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEEEEeec
Q 030523 115 LKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQVIFFF 162 (175)
Q Consensus 115 ~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~f~~~ 162 (175)
....+.++++.+.+++.|+.++ +.+ +++++++.. |++++|.-+
T Consensus 8 ~~~~f~~~A~~~~~~~~F~~~~---~~~-~~~~~~~~~-p~i~~~k~~ 50 (184)
T PF13848_consen 8 LFEIFEEAAEKLKGDYQFGVTF---NEE-LAKKYGIKE-PTIVVYKKF 50 (184)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEE----HH-HHHHCTCSS-SEEEEEECT
T ss_pred HHHHHHHHHHhCcCCcEEEEEc---HHH-HHHHhCCCC-CcEEEeccC
Confidence 4567889999997789999876 444 899999999 999999873
No 230
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=86.47 E-value=1.1 Score=32.61 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=26.1
Q ss_pred EEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCCh
Q 030523 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS 141 (175)
Q Consensus 101 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~ 141 (175)
+..|+.++|+.|+.....+++- ++.+-.+|+.+++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~------gi~~~~idi~~~~ 36 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH------DIPFTERNIFSSP 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc------CCCcEEeeccCCh
Confidence 4568899999999988776542 5677777876654
No 231
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=86.12 E-value=1.2 Score=27.85 Aligned_cols=53 Identities=9% Similarity=0.131 Sum_probs=34.6
Q ss_pred EEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccC---ChHHHHHHcCCCccCeEEE
Q 030523 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK---VSKDLVKRGNISKMPTIQV 158 (175)
Q Consensus 102 V~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~---~~~~l~~~~~I~~~Pt~~~ 158 (175)
..|+.++|+.|+...-.+++..- .+....+|... ....+.+...-..+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l----~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGI----DVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCC----CceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 35778899999999888766522 34555666532 1223555556668999975
No 232
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=85.27 E-value=12 Score=27.49 Aligned_cols=78 Identities=14% Similarity=0.115 Sum_probs=51.4
Q ss_pred hHHHHHHHh----hcCCCcEEEEEEcCCChhhhhchHHH---HHHHHHhCCCeEEEEEEccCCh----------------
Q 030523 85 HLDQILLRA----QELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNKVS---------------- 141 (175)
Q Consensus 85 ~f~~~l~~~----~~~~k~vlV~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~---------------- 141 (175)
.+++++.++ +++.|+.+|+.+++.-..+..+-..+ +++.+-.+.++.+..-|++...
T Consensus 5 s~~~Al~~A~~~~~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~ 84 (136)
T cd02990 5 SLEAAFQEACYRKARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQNFITWGWDMTKESNKARFLSSCTRHFGSV 84 (136)
T ss_pred cHHHHHHHHhhhhhhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHcCEEEEeeeccchhhhhHHHHhhhhhhhHH
Confidence 355555555 68899999999998775444443322 3333334456888888887642
Q ss_pred -HHHHHHcCCCccCeEEEEeec
Q 030523 142 -KDLVKRGNISKMPTIQVIFFF 162 (175)
Q Consensus 142 -~~l~~~~~I~~~Pt~~~f~~~ 162 (175)
...++.++...+|.+.+..-.
T Consensus 85 a~~~~~~~~~~~fP~~avI~~~ 106 (136)
T cd02990 85 AAQTIRNIKTDQLPAILIIMGK 106 (136)
T ss_pred HHHHHHhcCcCCCCeEEEEEec
Confidence 113566789999999988643
No 233
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=84.57 E-value=1.4 Score=31.07 Aligned_cols=34 Identities=15% Similarity=0.378 Sum_probs=26.3
Q ss_pred EEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCCh
Q 030523 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS 141 (175)
Q Consensus 102 V~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~ 141 (175)
..|+.++|+.|+.....+++ .++.+-.+|+.+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~------~~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA------NGIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH------cCCceEEEecCCCh
Confidence 35789999999999887776 25677788887654
No 234
>PRK12559 transcriptional regulator Spx; Provisional
Probab=83.84 E-value=1.9 Score=31.40 Aligned_cols=34 Identities=15% Similarity=0.296 Sum_probs=24.9
Q ss_pred EEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCC
Q 030523 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV 140 (175)
Q Consensus 101 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~ 140 (175)
+..|+.++|+.|+.....|++- ++.+-.+|+.++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~------gi~~~~~di~~~ 35 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN------QIDYTEKNIVSN 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc------CCCeEEEEeeCC
Confidence 5578899999999987766542 466666776554
No 235
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=83.46 E-value=6.6 Score=24.93 Aligned_cols=51 Identities=24% Similarity=0.421 Sum_probs=30.4
Q ss_pred EEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCC-hHHHHHHcCCCccCeEEE
Q 030523 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV-SKDLVKRGNISKMPTIQV 158 (175)
Q Consensus 101 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~-~~~l~~~~~I~~~Pt~~~ 158 (175)
+..|+.+.|+.|+..+-.+.+. ++.+-.++++.. ...+ +.-+-..+|+++.
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~------gi~y~~~~~~~~~~~~~-~~~~~~~vP~l~~ 53 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYH------GIPYEVVEVNPVSRKEI-KWSSYKKVPILRV 53 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHC------CCceEEEECCchhHHHH-HHhCCCccCEEEE
Confidence 4567889999999998766554 233333344332 1123 3345567898864
No 236
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=82.00 E-value=3.1 Score=27.58 Aligned_cols=51 Identities=20% Similarity=0.386 Sum_probs=33.3
Q ss_pred EEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChH---------------HHHHHcCCCccCeEEE
Q 030523 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---------------DLVKRGNISKMPTIQV 158 (175)
Q Consensus 102 V~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---------------~l~~~~~I~~~Pt~~~ 158 (175)
+.|++.-||.|......++++ ++.+-.|++..... +=.+..|--++|+++.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl------~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~ 70 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERL------NVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT 70 (85)
T ss_pred eeeccccCcchHHHHHHHHHc------CCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe
Confidence 679999999998776666654 24555566644211 0145567778898864
No 237
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=81.70 E-value=2.8 Score=29.53 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=25.3
Q ss_pred EEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCC
Q 030523 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV 140 (175)
Q Consensus 101 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~ 140 (175)
+..|+.++|+.|+.....+++. ++.+-.+|+.++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~------gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH------QIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCceEEEecCCC
Confidence 3467889999999988777653 466777777654
No 238
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=81.23 E-value=4.1 Score=27.07 Aligned_cols=54 Identities=7% Similarity=0.191 Sum_probs=35.2
Q ss_pred EEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEEE
Q 030523 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQV 158 (175)
Q Consensus 101 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~ 158 (175)
+..++.+.|+.|+...-.++... -.+.+..+|.....+.+.+......+|++..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~g----l~~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKN----IPHEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcC----CCCeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 45567888999998766665532 2456666666544333555556678999874
No 239
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=80.82 E-value=3.3 Score=26.03 Aligned_cols=52 Identities=15% Similarity=0.149 Sum_probs=33.7
Q ss_pred EEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCC---hHHHHHHcCCCccCeEE
Q 030523 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV---SKDLVKRGNISKMPTIQ 157 (175)
Q Consensus 102 V~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~---~~~l~~~~~I~~~Pt~~ 157 (175)
..|+.++|+.|+...-.+++.. -++....+|..+. ..++.+......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~g----i~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALG----LELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcC----CCCEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 4578899999997776666542 2456666665331 12356555566899996
No 240
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=80.67 E-value=8 Score=24.78 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=31.2
Q ss_pred EEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCC---hHHHHHHcCCCccCeEEE
Q 030523 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV---SKDLVKRGNISKMPTIQV 158 (175)
Q Consensus 101 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~---~~~l~~~~~I~~~Pt~~~ 158 (175)
+..++.++|+.|++..-.+++. ++.+-.++++.. ..++.+.-.-..+|+++.
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~------gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~ 56 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTEL------ELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVD 56 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHc------CCcEEEEECCCChHHHHHHHHhCCCCcccEEEe
Confidence 3456778999999877766654 233333455432 222444445567898853
No 241
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=79.84 E-value=2.6 Score=26.48 Aligned_cols=50 Identities=6% Similarity=0.147 Sum_probs=28.8
Q ss_pred EEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEE
Q 030523 103 DWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQ 157 (175)
Q Consensus 103 ~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~ 157 (175)
.++.++|+.|+...-.+....- .+..+.+|.+.... ..+..+-..+|++.
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl----~~~~~~~~~~~~~~-~~~~~~~~~vP~L~ 52 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNI----PVEQIILQNDDEAT-PIRMIGAKQVPILE 52 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCC----CeEEEECCCCchHH-HHHhcCCCccCEEE
Confidence 4678899999988776665421 23444444333222 23334445688875
No 242
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=79.04 E-value=3.4 Score=30.06 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=24.8
Q ss_pred EEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCC
Q 030523 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV 140 (175)
Q Consensus 101 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~ 140 (175)
+..|+.++|+.|+.....+++ .++.+-.+|+.++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~------~~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNA------HQLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHH------cCCCeEEEECCCC
Confidence 446788999999998766654 2567777777654
No 243
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=75.75 E-value=7.6 Score=28.81 Aligned_cols=46 Identities=13% Similarity=0.239 Sum_probs=33.1
Q ss_pred cEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCC
Q 030523 99 PILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS 151 (175)
Q Consensus 99 ~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~ 151 (175)
.-++.+++|.|+=|......++. ..+.+-.+..+.-. ++.++++|.
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~------~Gf~Vk~~~~~d~~-alK~~~gIp 71 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKA------NGFEVKVVETDDFL-ALKRRLGIP 71 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHh------CCcEEEEeecCcHH-HHHHhcCCC
Confidence 34778999999999987776662 34666666666655 378888875
No 244
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=74.79 E-value=10 Score=28.70 Aligned_cols=44 Identities=16% Similarity=0.372 Sum_probs=33.5
Q ss_pred CCCcEEEEEEcCCC-hhhhhchHHHHHHHHHh---CCCeEEEEEEccC
Q 030523 96 LSQPILIDWMASWC-RKCIYLKPKLEKLAAEF---DTKLKFYYVDVNK 139 (175)
Q Consensus 96 ~~k~vlV~F~a~wC-~~C~~~~p~l~~l~~~~---~~~v~~~~vd~d~ 139 (175)
.+++++|.|.=+.| ..|-.+...+.++.+.+ +.++.++.|.+|.
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP 98 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDP 98 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESST
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCC
Confidence 68999999988889 56887777777776655 2478888888875
No 245
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=74.78 E-value=5.1 Score=31.62 Aligned_cols=39 Identities=15% Similarity=0.299 Sum_probs=28.4
Q ss_pred CCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEE
Q 030523 97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVD 136 (175)
Q Consensus 97 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd 136 (175)
.+..++.|...-||+|+...|.+++..... +++++...+
T Consensus 84 ~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~-~~~~~~~~~ 122 (244)
T COG1651 84 APVTVVEFFDYTCPYCKEAFPELKKKYIDD-GKVRLVLRE 122 (244)
T ss_pred CCceEEEEecCcCccHHHHHHHHHHHhhhc-CCCceEEEE
Confidence 377899999999999988888888755554 444444444
No 246
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=74.38 E-value=7.7 Score=24.68 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=34.9
Q ss_pred EEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEE
Q 030523 104 WMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQ 157 (175)
Q Consensus 104 F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~ 157 (175)
++.++|+.|+...=.++... -.+.+..++..+....+.+...-..+|++.
T Consensus 2 y~~~~Sp~~~kv~~~l~~~~----i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~ 51 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEEKG----IPYELVPVDPEEKRPEFLKLNPKGKVPVLV 51 (75)
T ss_dssp EEETTSHHHHHHHHHHHHHT----EEEEEEEEBTTSTSHHHHHHSTTSBSSEEE
T ss_pred CCcCCChHHHHHHHHHHHcC----CeEEEeccCcccchhHHHhhcccccceEEE
Confidence 67899999999876665432 135666666555444477777778899985
No 247
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=71.61 E-value=6.8 Score=29.45 Aligned_cols=29 Identities=31% Similarity=0.570 Sum_probs=25.3
Q ss_pred EEEEEcCCChhhhhchHHHHHHHHHhCCC
Q 030523 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTK 129 (175)
Q Consensus 101 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~ 129 (175)
|.+|+-+.||.|-...+.++++.++++++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~~~ 31 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYGGG 31 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhCCC
Confidence 66889999999999999999999988433
No 248
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=71.10 E-value=18 Score=28.30 Aligned_cols=56 Identities=14% Similarity=0.285 Sum_probs=37.8
Q ss_pred cCCCcEEEEEEcCCCh-hhhhchHHHHHHHHHhC----CCeEEEEEEccC--ChHHHHHHcCC
Q 030523 95 ELSQPILIDWMASWCR-KCIYLKPKLEKLAAEFD----TKLKFYYVDVNK--VSKDLVKRGNI 150 (175)
Q Consensus 95 ~~~k~vlV~F~a~wC~-~C~~~~p~l~~l~~~~~----~~v~~~~vd~d~--~~~~l~~~~~I 150 (175)
-.+++++|+|.=+.|+ .|-.+...+..+.++.. .++.++.|.+|. +..++.++|..
T Consensus 65 l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~ 127 (207)
T COG1999 65 LKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAE 127 (207)
T ss_pred cCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhc
Confidence 4789999999877885 58888888877777664 356555555543 22235555655
No 249
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=70.89 E-value=22 Score=31.55 Aligned_cols=62 Identities=23% Similarity=0.177 Sum_probs=42.5
Q ss_pred hhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEEEEee
Q 030523 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQVIFF 161 (175)
Q Consensus 84 ~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~f~~ 161 (175)
+++..++. +-.++|-+.++.+.|..|..+...++++++.- +++.+-..+.+ ...|++.+...
T Consensus 8 ~~l~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~~i~~~~~~~~------------~~~p~~~~~~~ 69 (517)
T PRK15317 8 TQLKQYLE---LLERPIELVASLDDSEKSAELKELLEEIASLS-DKITVEEDSLD------------VRKPSFSITRP 69 (517)
T ss_pred HHHHHHHH---hCCCCEEEEEEeCCCchHHHHHHHHHHHHHhC-CceEEEEccCC------------CCCCEEEEEcC
Confidence 45666664 45667766677778999999999999998776 66666432211 23788888653
No 250
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=70.86 E-value=18 Score=28.52 Aligned_cols=70 Identities=14% Similarity=0.122 Sum_probs=41.1
Q ss_pred hhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEEEEee
Q 030523 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQVIFF 161 (175)
Q Consensus 83 ~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~f~~ 161 (175)
.+.+..++.++...+.++++.=.-+. .-+.....+.++.++ +. ...+.-+|. +.++|+|+.+|+|++-..
T Consensus 102 ~~sLk~Ll~qa~~~G~p~VlRG~~~n--sfk~Ta~~v~~L~~~---~~---~~gv~IDP~-lF~~F~I~~VPafVv~C~ 171 (212)
T PRK13730 102 EEGLKRMLGETRHYGIPATLRGMVNN--DLKTTAEAVLSLVKD---GA---TDGVQIDPT-LFSQYGIRSVPALVVFCS 171 (212)
T ss_pred HHHHHHHHHHHHHhCCcEEEeCCCCC--CHHHHHHHHHHHhcc---CC---CCceeECHH-HHHhcCCccccEEEEEcC
Confidence 34677777777666666666544442 223333333333321 11 112334576 899999999999999754
No 251
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=67.76 E-value=36 Score=23.19 Aligned_cols=62 Identities=19% Similarity=0.202 Sum_probs=38.6
Q ss_pred hhHHHHHHHhhcCCCcE-EEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEEEEeec
Q 030523 84 DHLDQILLRAQELSQPI-LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQVIFFF 162 (175)
Q Consensus 84 ~~f~~~l~~~~~~~k~v-lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~f~~~ 162 (175)
+++..++. +-.++| ++.|..+. ..|..+...++++++-- +++.+-..+.+. ..|++.+...+
T Consensus 8 ~qL~~~f~---~l~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lS-dkI~~~~~~~~~------------~~P~~~i~~~~ 70 (94)
T cd02974 8 QQLKAYLE---RLENPVELVASLDDS-EKSAELLELLEEIASLS-DKITLEEDNDDE------------RKPSFSINRPG 70 (94)
T ss_pred HHHHHHHH---hCCCCEEEEEEeCCC-cchHHHHHHHHHHHHhC-CceEEEEecCCC------------CCCEEEEecCC
Confidence 45555554 234455 44555544 99999999999998766 666664333211 36888886544
No 252
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=67.65 E-value=9.8 Score=28.44 Aligned_cols=34 Identities=24% Similarity=0.496 Sum_probs=27.8
Q ss_pred EEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEE
Q 030523 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYY 134 (175)
Q Consensus 100 vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~ 134 (175)
.|.+|+..-||.|-...+.+.++.+.+ +++.+-.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~-~~~~i~~ 34 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEY-PDVEIEW 34 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHH-TTCEEEE
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHh-cCCcEEE
Confidence 377899999999999999999999998 3344433
No 253
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=67.60 E-value=30 Score=30.71 Aligned_cols=64 Identities=17% Similarity=0.169 Sum_probs=42.9
Q ss_pred hhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEEEEeec
Q 030523 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQVIFFF 162 (175)
Q Consensus 84 ~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~f~~~ 162 (175)
+++.+++. +-.++|-+.++.+.|..|..+...++++++.- +++.+...+.+. ...|++.+...+
T Consensus 8 ~~l~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~ki~~~~~~~~~-----------~~~p~~~~~~~~ 71 (515)
T TIGR03140 8 AQLKSYLA---SLENPVTLVLSAGSHEKSKELLELLDEIASLS-DKISLTQNTADT-----------LRKPSFTILRDG 71 (515)
T ss_pred HHHHHHHH---hcCCCEEEEEEeCCCchhHHHHHHHHHHHHhC-CCeEEEEecCCc-----------CCCCeEEEecCC
Confidence 45666664 34566666666557999999999999998776 677765433221 245988886544
No 254
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=61.58 E-value=13 Score=29.91 Aligned_cols=46 Identities=17% Similarity=0.429 Sum_probs=37.7
Q ss_pred cCCCcEEEEEEcCCChhhhhchHHHHHHHHHhC----CCeEEEEEEccCC
Q 030523 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD----TKLKFYYVDVNKV 140 (175)
Q Consensus 95 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~----~~v~~~~vd~d~~ 140 (175)
..+.++||-+...+|..|..-...++.|..++. .+|.|+-||--..
T Consensus 24 ~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~ 73 (238)
T PF04592_consen 24 SLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGE 73 (238)
T ss_pred cCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCc
Confidence 468899999999999999999988988876652 5799999886443
No 255
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=60.93 E-value=13 Score=26.18 Aligned_cols=34 Identities=18% Similarity=0.078 Sum_probs=24.4
Q ss_pred EEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCC
Q 030523 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV 140 (175)
Q Consensus 101 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~ 140 (175)
+..|+.|.|+.|+.....+++- ++.+-.+|+-++
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~------gi~~~~~d~~~~ 35 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA------GHEVEVRDLLTE 35 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEeehhcC
Confidence 4568899999999887666542 466667776543
No 256
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=60.88 E-value=14 Score=26.22 Aligned_cols=51 Identities=14% Similarity=0.349 Sum_probs=36.1
Q ss_pred CChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcC--CCccCeEEEE
Q 030523 108 WCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGN--ISKMPTIQVI 159 (175)
Q Consensus 108 wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~--I~~~Pt~~~f 159 (175)
.|++|..++-.+...-. ....+.+.+|+...-..++.+..| =++.|++++=
T Consensus 23 ~Cp~c~~iEGlLa~~P~-l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~ 75 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPD-LRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLA 75 (112)
T ss_pred ECCchHHHHhHHhhChh-hhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeC
Confidence 59999999887765432 235688999998876554555554 4688988763
No 257
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=56.26 E-value=12 Score=23.01 Aligned_cols=53 Identities=13% Similarity=0.221 Sum_probs=32.5
Q ss_pred EEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccC---ChHHHHHHcCCCccCeEEE
Q 030523 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK---VSKDLVKRGNISKMPTIQV 158 (175)
Q Consensus 102 V~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~---~~~~l~~~~~I~~~Pt~~~ 158 (175)
..|+.+.|+.|+...-.+++.. -.+....+|... ....+.+...-..+|++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~----~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLG----IPYEWVEVDILKGETRTPEFLALNPNGEVPVLEL 57 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcC----CCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEE
Confidence 3577889999998776666542 235556666432 1222444444567899864
No 258
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=51.59 E-value=16 Score=27.42 Aligned_cols=25 Identities=20% Similarity=0.041 Sum_probs=19.8
Q ss_pred HHHHcCCCccCeEEEEeecccceecc
Q 030523 144 LVKRGNISKMPTIQVIFFFPFYFTFL 169 (175)
Q Consensus 144 l~~~~~I~~~Pt~~~f~~~~~~~~~~ 169 (175)
.+.++||.++||+++..... .|.++
T Consensus 161 ~a~~~gv~g~Ptfvv~~~~~-~~~~~ 185 (193)
T cd03025 161 LARELGINGFPTLVLEDDNG-EGILL 185 (193)
T ss_pred HHHHcCCCccCEEEEEeCCe-EEEec
Confidence 57789999999999997766 55444
No 259
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=49.74 E-value=1e+02 Score=24.69 Aligned_cols=61 Identities=20% Similarity=0.267 Sum_probs=36.0
Q ss_pred cCCCcEEEEEEcCCC-hh-hhhchHHHHHHHHHh----CCCeEEEEEEccCChH---HHHHHcCCCccCe
Q 030523 95 ELSQPILIDWMASWC-RK-CIYLKPKLEKLAAEF----DTKLKFYYVDVNKVSK---DLVKRGNISKMPT 155 (175)
Q Consensus 95 ~~~k~vlV~F~a~wC-~~-C~~~~p~l~~l~~~~----~~~v~~~~vd~d~~~~---~l~~~~~I~~~Pt 155 (175)
+-++||-|.+|.+-- +. =....+.+.++.++| ++++.+-.+|.+.+++ +.++++||...+.
T Consensus 22 ~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~~~~ 91 (271)
T PF09822_consen 22 SLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQPVQI 91 (271)
T ss_pred hCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCCccce
Confidence 345677777776641 11 233334444444444 3489999999987765 1234488887553
No 260
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=49.73 E-value=24 Score=24.78 Aligned_cols=33 Identities=18% Similarity=0.049 Sum_probs=24.8
Q ss_pred EEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCC
Q 030523 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV 140 (175)
Q Consensus 102 V~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~ 140 (175)
..|+.+.|..|+.....+++- ++.+-.+|+.+.
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~------~i~~~~~di~~~ 34 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK------GIEPEVVKYLKN 34 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC------CCCeEEEeccCC
Confidence 468899999999988877653 466667777554
No 261
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=49.48 E-value=24 Score=24.63 Aligned_cols=33 Identities=18% Similarity=0.114 Sum_probs=23.9
Q ss_pred EEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCC
Q 030523 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV 140 (175)
Q Consensus 102 V~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~ 140 (175)
..|+.+.|..|+.....+++- ++.+-.+|+-+.
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~------~i~~~~~di~~~ 34 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA------GIEPEIVEYLKT 34 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC------CCCeEEEecccC
Confidence 468899999999987666542 466667777543
No 262
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=49.28 E-value=35 Score=21.57 Aligned_cols=52 Identities=6% Similarity=0.031 Sum_probs=32.5
Q ss_pred EEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccC---ChHHHHHHcCCCccCeEE
Q 030523 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK---VSKDLVKRGNISKMPTIQ 157 (175)
Q Consensus 102 V~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~---~~~~l~~~~~I~~~Pt~~ 157 (175)
..|+.+.|+.|+...-.+++. +-.+.+..+|... .+.++.+.-.-..+|++.
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~----gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~ 56 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEK----GLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI 56 (73)
T ss_pred EEecCCCCccHHHHHHHHHHc----CCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEE
Confidence 457788899998776555443 2346677777632 222355555566789885
No 263
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=46.49 E-value=79 Score=22.15 Aligned_cols=44 Identities=20% Similarity=0.212 Sum_probs=37.3
Q ss_pred cCCCcEEEEEEcCCChhhhhchHHHHHHHHHhC-CCeEEEEEEccC
Q 030523 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNK 139 (175)
Q Consensus 95 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~ 139 (175)
-.++++||.=.|+-|+.-. .-..++++.++|+ ....++..-+++
T Consensus 19 y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnq 63 (108)
T PF00255_consen 19 YKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQ 63 (108)
T ss_dssp GTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBST
T ss_pred cCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHH
Confidence 4789999999999999888 6678999999996 468999988865
No 264
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=45.31 E-value=40 Score=25.83 Aligned_cols=58 Identities=10% Similarity=0.147 Sum_probs=37.2
Q ss_pred CCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEE
Q 030523 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQ 157 (175)
Q Consensus 96 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~ 157 (175)
++...+..|+.+.|+.|....=.+++.. -++.+..+|....+.++.+.---..+|++.
T Consensus 6 ~~~~~~~Ly~~~~s~~~~rv~~~L~e~g----l~~e~~~v~~~~~~~~~~~~nP~g~VPvL~ 63 (211)
T PRK09481 6 NKRSVMTLFSGPTDIYSHQVRIVLAEKG----VSVEIEQVEKDNLPQDLIDLNPYQSVPTLV 63 (211)
T ss_pred CCCCeeEEeCCCCChhHHHHHHHHHHCC----CCCEEEeCCcccCCHHHHHhCCCCCCCEEE
Confidence 4445566666788999999887666542 246677777655443355544456789886
No 265
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=45.27 E-value=46 Score=20.57 Aligned_cols=54 Identities=7% Similarity=0.106 Sum_probs=31.7
Q ss_pred EEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEEE
Q 030523 103 DWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQV 158 (175)
Q Consensus 103 ~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~ 158 (175)
.|+.+.|+.|....-.++... .+-.+..+.+|......++.+......+|++..
T Consensus 3 Ly~~~~s~~~~~~~~~l~~~~--~~i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~ 56 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHETG--LGDDVELVLVNPWSDDESLLAVNPLGKIPALVL 56 (73)
T ss_pred EecCCCCcHHHHHHHHHHHhC--CCCCcEEEEcCcccCChHHHHhCCCCCCCEEEE
Confidence 467788999997766555421 112355666654333333555555667898864
No 266
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=44.38 E-value=38 Score=23.00 Aligned_cols=48 Identities=19% Similarity=0.151 Sum_probs=32.3
Q ss_pred cCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEE
Q 030523 106 ASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQ 157 (175)
Q Consensus 106 a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~ 157 (175)
..+|+.|+...=.+++. +-.+.+..+|....++.+.+.--...+|++.
T Consensus 19 ~g~cpf~~rvrl~L~eK----gi~ye~~~vd~~~~p~~~~~~nP~g~vPvL~ 66 (91)
T cd03061 19 IGNCPFCQRLFMVLWLK----GVVFNVTTVDMKRKPEDLKDLAPGTQPPFLL 66 (91)
T ss_pred CCCChhHHHHHHHHHHC----CCceEEEEeCCCCCCHHHHHhCCCCCCCEEE
Confidence 35899998887666543 1245667777777666566655567799765
No 267
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=43.28 E-value=31 Score=21.54 Aligned_cols=53 Identities=19% Similarity=0.211 Sum_probs=32.8
Q ss_pred EEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccC---ChHHHHHHcCCCccCeEE
Q 030523 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK---VSKDLVKRGNISKMPTIQ 157 (175)
Q Consensus 101 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~---~~~~l~~~~~I~~~Pt~~ 157 (175)
+..|+.+.|+.|+...-.+++.. -.+....+|... .++.+.+..-...+|++.
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~----i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~ 57 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKG----VDYELVPVDLTKGEHKSPEHLARNPFGQIPALE 57 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcC----CCcEEEEeCccccccCCHHHHhhCCCCCCCEEE
Confidence 44556777999988887666543 234555555532 223356666677899875
No 268
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=41.94 E-value=19 Score=28.32 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.3
Q ss_pred HHHHHcCCCccCeEEEEeecccc
Q 030523 143 DLVKRGNISKMPTIQVIFFFPFY 165 (175)
Q Consensus 143 ~l~~~~~I~~~Pt~~~f~~~~~~ 165 (175)
.+++++++.++||+++--+++||
T Consensus 165 ~l~~rlg~~GfPTl~le~ng~~~ 187 (212)
T COG3531 165 RLMQRLGAAGFPTLALERNGTMY 187 (212)
T ss_pred HHHHHhccCCCCeeeeeeCCceE
Confidence 47889999999999998888876
No 269
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=41.30 E-value=60 Score=20.12 Aligned_cols=51 Identities=14% Similarity=0.092 Sum_probs=30.5
Q ss_pred EEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCC-CccCeEE
Q 030523 103 DWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNI-SKMPTIQ 157 (175)
Q Consensus 103 ~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I-~~~Pt~~ 157 (175)
.++.+.|+.|+...-.++... -.+....+|....+..+.+..-. ..+|++.
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~g----l~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~ 54 (74)
T cd03058 3 LLGAWASPFVLRVRIALALKG----VPYEYVEEDLGNKSELLLASNPVHKKIPVLL 54 (74)
T ss_pred EEECCCCchHHHHHHHHHHcC----CCCEEEEeCcccCCHHHHHhCCCCCCCCEEE
Confidence 456778999998887666542 23455556554333323333332 5799886
No 270
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=41.29 E-value=38 Score=23.24 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=27.1
Q ss_pred EEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCC
Q 030523 104 WMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS 151 (175)
Q Consensus 104 F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~ 151 (175)
||-.+|+-|......+.+... .+.+.|+-+.-+... ++.+.+++.
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~--~~~l~~~~~~~~~~~-~~~~~~~~~ 46 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDR--GGRLRFVDIQSEPDQ-ALLASYGIS 46 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCC--CCCEEEEECCChhhh-hHHHhcCcC
Confidence 788899999999988877621 134555544222222 244556654
No 271
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=38.59 E-value=1.4e+02 Score=20.97 Aligned_cols=70 Identities=19% Similarity=0.214 Sum_probs=40.4
Q ss_pred hhHHHHHHHhhcCCCcEEEEE-E---cCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcC-CCccCeEE-
Q 030523 84 DHLDQILLRAQELSQPILIDW-M---ASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGN-ISKMPTIQ- 157 (175)
Q Consensus 84 ~~f~~~l~~~~~~~k~vlV~F-~---a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~-I~~~Pt~~- 157 (175)
+-+++.+ ++.+|+++. . .|-|+........+.. . +-+.|..+|+-.+++ +.+... ....||+-
T Consensus 6 ~~I~~~i-----~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~----~-g~v~~~~vnVL~d~e-iR~~lk~~s~WPT~PQ 74 (105)
T COG0278 6 DRIQKQI-----KENPVVLFMKGTPEFPQCGFSAQAVQILSA----C-GVVDFAYVDVLQDPE-IRQGLKEYSNWPTFPQ 74 (105)
T ss_pred HHHHHHh-----hcCceEEEecCCCCCCCCCccHHHHHHHHH----c-CCcceeEEeeccCHH-HHhccHhhcCCCCCce
Confidence 3455556 344555533 3 3566655555444433 3 228899999988886 766543 44677774
Q ss_pred EEeeccc
Q 030523 158 VIFFFPF 164 (175)
Q Consensus 158 ~f~~~~~ 164 (175)
+|..+-+
T Consensus 75 Lyi~GEf 81 (105)
T COG0278 75 LYVNGEF 81 (105)
T ss_pred eeECCEE
Confidence 4444443
No 272
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=37.83 E-value=1.6e+02 Score=21.59 Aligned_cols=83 Identities=13% Similarity=0.145 Sum_probs=45.4
Q ss_pred eeEEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhh--hchHHHHHHHHH-hCCCeEEEEEEccCChHHH--HHHcC-
Q 030523 76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCI--YLKPKLEKLAAE-FDTKLKFYYVDVNKVSKDL--VKRGN- 149 (175)
Q Consensus 76 ~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~--~~~p~l~~l~~~-~~~~v~~~~vd~d~~~~~l--~~~~~- 149 (175)
.++++.+.++.++.+. +.+..+|| +-++-|+ |. ..+|-....... .++ =.++.|=...+.++. ++.|=
T Consensus 17 Gf~eL~T~e~Vd~~~~---~~~GTtlV-vVNSVCG-CAag~ARPa~~~al~~~kkP-D~lvTVFAGqDkEAt~~aR~yf~ 90 (136)
T PF06491_consen 17 GFEELTTAEEVDEALK---NKEGTTLV-VVNSVCG-CAAGNARPAAAMALQNDKKP-DHLVTVFAGQDKEATAKAREYFE 90 (136)
T ss_dssp T-EE--SHHHHHHHHH---H--SEEEE-EEE-SSH-HHHHTHHHHHHHHHHHSS---SEEEEEETTTSHHHHHHHHHTST
T ss_pred CccccCCHHHHHHHHh---CCCCcEEE-EEecccc-ccccccCHHHHHHHhCCCCC-CceEEeccCCCHHHHHHHHHhcC
Confidence 4688899999999995 24445555 5567888 55 345655444332 223 355566565555433 34442
Q ss_pred --CCccCeEEEEeeccc
Q 030523 150 --ISKMPTIQVIFFFPF 164 (175)
Q Consensus 150 --I~~~Pt~~~f~~~~~ 164 (175)
-.+-|++.+|+.+..
T Consensus 91 ~~pPSSPS~ALfKdGel 107 (136)
T PF06491_consen 91 PYPPSSPSIALFKDGEL 107 (136)
T ss_dssp TS---SSEEEEEETTEE
T ss_pred CCCCCCchheeeeCCEE
Confidence 346799999998865
No 273
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=37.43 E-value=1.6e+02 Score=26.08 Aligned_cols=74 Identities=8% Similarity=0.087 Sum_probs=46.7
Q ss_pred hHHHHHHHhhcCCCcEEEEEEcCCChhhhhchH-HHH-HH-HHHhCCCeEEEEEEccCC--hHHHHHHcCCCccCeEEEE
Q 030523 85 HLDQILLRAQELSQPILIDWMASWCRKCIYLKP-KLE-KL-AAEFDTKLKFYYVDVNKV--SKDLVKRGNISKMPTIQVI 159 (175)
Q Consensus 85 ~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p-~l~-~l-~~~~~~~v~~~~vd~d~~--~~~l~~~~~I~~~Pt~~~f 159 (175)
++-++|..+ +.++.++|.|-+..--....|.. .|. .. .+..-..+..++|+.... .+ ++.-|-+..+|++.++
T Consensus 7 nipeAIa~a-K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~q-Fs~IYp~v~vPs~ffI 84 (506)
T KOG2507|consen 7 NIPEAIAEA-KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQ-FSAIYPYVSVPSIFFI 84 (506)
T ss_pred chHHHHHHh-hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhh-hhhhcccccccceeee
Confidence 455667777 56667777777766666666662 222 21 222224577777777553 44 7888999999998765
Q ss_pred e
Q 030523 160 F 160 (175)
Q Consensus 160 ~ 160 (175)
-
T Consensus 85 g 85 (506)
T KOG2507|consen 85 G 85 (506)
T ss_pred c
Confidence 4
No 274
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=36.74 E-value=56 Score=28.41 Aligned_cols=67 Identities=15% Similarity=0.210 Sum_probs=47.8
Q ss_pred CCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccCeEEEEeecccce
Q 030523 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQVIFFFPFYF 166 (175)
Q Consensus 96 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~~f~~~~~~~ 166 (175)
.+..-+=-|++-.|..|-..-..+.-++- +++++.-..||-.-..++ .+.-+|.++||+. .++.-||
T Consensus 115 ~g~~~FETy~SltC~nCPDVVQALN~msv-lNp~I~H~~IdGa~Fq~E-vear~IMaVPtvf--lnGe~fg 181 (520)
T COG3634 115 DGDFHFETYFSLTCHNCPDVVQALNLMSV-LNPRIKHTAIDGALFQDE-VEARNIMAVPTVF--LNGEEFG 181 (520)
T ss_pred CCceeEEEEEEeeccCChHHHHHHHHHHh-cCCCceeEEecchhhHhH-HHhccceecceEE--Ecchhhc
Confidence 45556667788889999877766665544 348899999988766553 5566999999964 4555444
No 275
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=36.30 E-value=58 Score=22.37 Aligned_cols=32 Identities=19% Similarity=0.387 Sum_probs=21.2
Q ss_pred EEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCCh
Q 030523 104 WMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS 141 (175)
Q Consensus 104 F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~ 141 (175)
|+.+.|..|+.....+++ .++.+-.+|+.+.+
T Consensus 1 Y~~~~C~t~rka~~~L~~------~gi~~~~~d~~k~p 32 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEE------NGIEYEFIDYKKEP 32 (110)
T ss_dssp EE-TT-HHHHHHHHHHHH------TT--EEEEETTTS-
T ss_pred CcCCCCHHHHHHHHHHHH------cCCCeEeehhhhCC
Confidence 577899999999888775 35777788887643
No 276
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=33.39 E-value=2.4e+02 Score=22.59 Aligned_cols=73 Identities=19% Similarity=0.165 Sum_probs=44.6
Q ss_pred HHHHHHHhhcCCCcEEEEEE----cCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcC-CCccCeEE-EE
Q 030523 86 LDQILLRAQELSQPILIDWM----ASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGN-ISKMPTIQ-VI 159 (175)
Q Consensus 86 f~~~l~~~~~~~k~vlV~F~----a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~-I~~~Pt~~-~f 159 (175)
++..+... -+.++|+++.= .|-|+..+.+...+... ++.+...|+-.+.+ +.+..+ .+..|||= +|
T Consensus 128 ~~~~l~~l-v~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~------nV~~~~fdIL~Dee-lRqglK~fSdWPTfPQly 199 (227)
T KOG0911|consen 128 LDNRLEKL-VKAKPVMLFMKGTPEEPKCGFSRQLVGILQSH------NVNYTIFDVLTDEE-LRQGLKEFSDWPTFPQLY 199 (227)
T ss_pred HHHHHHHh-cccCeEEEEecCCCCcccccccHHHHHHHHHc------CCCeeEEeccCCHH-HHHHhhhhcCCCCcccee
Confidence 44444443 35566666442 46777777666655543 46688889988775 655543 45678875 66
Q ss_pred eecccce
Q 030523 160 FFFPFYF 166 (175)
Q Consensus 160 ~~~~~~~ 166 (175)
..|-+-|
T Consensus 200 I~GEFiG 206 (227)
T KOG0911|consen 200 VKGEFIG 206 (227)
T ss_pred ECCEecc
Confidence 6665555
No 277
>PRK10853 putative reductase; Provisional
Probab=33.24 E-value=57 Score=23.09 Aligned_cols=34 Identities=12% Similarity=0.101 Sum_probs=24.9
Q ss_pred EEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCC
Q 030523 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV 140 (175)
Q Consensus 101 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~ 140 (175)
+..|+.+.|..|+.....+++- ++.+-.+|+-++
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~------~i~~~~~d~~k~ 35 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ------GIDYRFHDYRVD 35 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc------CCCcEEeehccC
Confidence 4567889999999988877652 466667776543
No 278
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=32.81 E-value=2.5e+02 Score=22.25 Aligned_cols=57 Identities=18% Similarity=0.283 Sum_probs=37.9
Q ss_pred EcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHH----HHHHHHhCCCeEEEEEEc
Q 030523 79 PINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL----EKLAAEFDTKLKFYYVDV 137 (175)
Q Consensus 79 ~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l----~~l~~~~~~~v~~~~vd~ 137 (175)
.+.+.+++.+++.++.+.++|.||++..+ |+.=-.+.|.. .+++.+- ..+.+++.|-
T Consensus 172 ~v~~~~el~~al~~a~~~~gP~lIev~~~-C~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 232 (235)
T cd03376 172 SVAYPEDLYKKVKKALSIEGPAYIHILSP-CPTGWRFDPSKTIEIARLAVET-GFWPLYEYEN 232 (235)
T ss_pred cCCCHHHHHHHHHHHHhCCCCEEEEEECC-CCCCCCCCHHHHHHHHHHHHhc-CceeEEEEeC
Confidence 46788899999988767889999999987 55444444433 2333332 4566666553
No 279
>COG3439 Uncharacterized conserved protein [Function unknown]
Probab=32.41 E-value=92 Score=22.87 Aligned_cols=54 Identities=22% Similarity=0.264 Sum_probs=34.7
Q ss_pred hHHHHHHHHHhC--CCeEEEEEEccCChHHHHHHcC-CCccCeEEEEeecccceecccccc
Q 030523 116 KPKLEKLAAEFD--TKLKFYYVDVNKVSKDLVKRGN-ISKMPTIQVIFFFPFYFTFLFAKN 173 (175)
Q Consensus 116 ~p~l~~l~~~~~--~~v~~~~vd~d~~~~~l~~~~~-I~~~Pt~~~f~~~~~~~~~~~~~~ 173 (175)
...++.+..+.+ +-..|..+|..+ .+++-+ ..--|+.++++-+|.+||-+..++
T Consensus 22 ~E~i~~l~~~lk~~G~~V~~~id~~e----~l~~~g~~~~~p~~Il~~cnP~~g~~ll~~~ 78 (137)
T COG3439 22 DETIERLEEKLKKNGFKVFTEIDHAE----ALKNAGVLDIPPYTILVFCNPKAGTPLLSKN 78 (137)
T ss_pred HHHHHHHHHHHHhCCCeEEEEecHHH----HHHhcCcCCCCCeEEEEEcCCcccchhhccC
Confidence 344555555442 334555555433 344445 777899999999999999877654
No 280
>PF13926 DUF4211: Domain of unknown function (DUF4211)
Probab=31.82 E-value=80 Score=23.26 Aligned_cols=47 Identities=19% Similarity=0.213 Sum_probs=33.0
Q ss_pred hHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCccC-eEEEEeecccc
Q 030523 116 KPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMP-TIQVIFFFPFY 165 (175)
Q Consensus 116 ~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~I~~~P-t~~~f~~~~~~ 165 (175)
.+.+.+..+.+ +.+.+......... -|+.-+..+-| ++.++..|.+|
T Consensus 93 ~~~f~~aL~~~-P~l~v~~~~~~~~~--~C~AC~~~~~~a~~~i~l~G~~Y 140 (153)
T PF13926_consen 93 KPDFKKALETY-PELSVTEISYHTGP--SCDACNRSGHPATFRIRLSGKPY 140 (153)
T ss_pred CHHHHHHHHHC-CCeEEEecCCCCCC--cCcccCCCCCCceEEEEeCCCCC
Confidence 45566666666 77777777654333 36666777777 99999999988
No 281
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=31.82 E-value=78 Score=22.74 Aligned_cols=33 Identities=18% Similarity=0.125 Sum_probs=23.9
Q ss_pred EEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccC
Q 030523 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139 (175)
Q Consensus 101 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~ 139 (175)
+..|+.+.|..|+.....|++- ++.+-.+|+-+
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~~------gi~~~~~d~~~ 35 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKAS------GHDVEVQDILK 35 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCCcEEEeccC
Confidence 5568889999999988877653 45556666544
No 282
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=31.28 E-value=2.3e+02 Score=25.26 Aligned_cols=83 Identities=13% Similarity=0.212 Sum_probs=45.2
Q ss_pred hHHHHHHHhhcCCCcEEEEEEcCC-ChhhhhchHHHHHHHHHhC-CCeEEEEEEccCChHHHHHHcCCCcc--CeEEEEe
Q 030523 85 HLDQILLRAQELSQPILIDWMASW-CRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVSKDLVKRGNISKM--PTIQVIF 160 (175)
Q Consensus 85 ~f~~~l~~~~~~~k~vlV~F~a~w-C~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~~~l~~~~~I~~~--Pt~~~f~ 160 (175)
+|++.....++.-..++|.|+.+- ...=......+.++.+++. .++.++.+.-..-....+-..++... =+++|+.
T Consensus 269 ~~~~~~l~~~~~~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~i~~~~~~fsr~~~Ld~g~~~~~~d~L~f~~ 348 (499)
T PF05679_consen 269 NFEKVCLETDDNVFLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKWISVKTGEFSRGAALDVGAKKFPPDSLLFFC 348 (499)
T ss_pred HHHHHhcccCCceEEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEEEEecCCCccHHHHHHhhcccCCCCcEEEEE
Confidence 344443333345667888888743 2222334556677777772 35666666622211113333444433 3588888
Q ss_pred eccccee
Q 030523 161 FFPFYFT 167 (175)
Q Consensus 161 ~~~~~~~ 167 (175)
..++.+|
T Consensus 349 Dvd~~f~ 355 (499)
T PF05679_consen 349 DVDMVFT 355 (499)
T ss_pred eCCcccC
Confidence 8888776
No 283
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=30.60 E-value=1.1e+02 Score=22.89 Aligned_cols=43 Identities=12% Similarity=0.152 Sum_probs=34.8
Q ss_pred CCCcEEEEEEcCCChhhhhchHHHHHHHHHhCC-CeEEEEEEcc
Q 030523 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN 138 (175)
Q Consensus 96 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d 138 (175)
.++-+.+.++++.++-|.-+...++.+++.+.+ ++.+-.+++.
T Consensus 126 ~~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~~v~i~~~~~~ 169 (171)
T PF07700_consen 126 DDNELTLHYRSPRPGLCPYVIGLIRGAAKHFFELDVEIEHVECM 169 (171)
T ss_dssp ETTEEEEEEEESSSSTHHHHHHHHHHHHHHTTEEEEEEEEEECC
T ss_pred CCCEEEEEEECCCcCHHHHHHHHHHHHHHHhCCCCeEEEEeccc
Confidence 455678889999999999999999999999966 6666666554
No 284
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=30.44 E-value=35 Score=31.11 Aligned_cols=56 Identities=14% Similarity=0.255 Sum_probs=38.1
Q ss_pred hhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHH-H--HHHHHHhCCCeEEEEEEccCChH
Q 030523 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPK-L--EKLAAEFDTKLKFYYVDVNKVSK 142 (175)
Q Consensus 83 ~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~-l--~~l~~~~~~~v~~~~vd~d~~~~ 142 (175)
.+.|+++- .+++|+++-..-+-|--|..|+.. | ++.++.+..++.-++||-++-|+
T Consensus 102 qeaf~kar----~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPD 160 (786)
T KOG2244|consen 102 QEAFNKAR----AENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPD 160 (786)
T ss_pred HHHHHHHH----hcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCc
Confidence 44566665 799999999988899999998743 2 33555554455556666655453
No 285
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=29.90 E-value=88 Score=22.19 Aligned_cols=22 Identities=18% Similarity=0.219 Sum_probs=17.9
Q ss_pred EEEEEcCCChhhhhchHHHHHH
Q 030523 101 LIDWMASWCRKCIYLKPKLEKL 122 (175)
Q Consensus 101 lV~F~a~wC~~C~~~~p~l~~l 122 (175)
+..|+.|-|..|+.....+++-
T Consensus 3 itiy~~p~C~t~rka~~~L~~~ 24 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEH 24 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 5568899999999988877653
No 286
>KOG0324 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.18 E-value=50 Score=26.19 Aligned_cols=55 Identities=18% Similarity=0.142 Sum_probs=43.0
Q ss_pred EEEEcCCChhhhhchHHHHHHHHHhCC-CeEEEEEEccCChHHHHHHcCCCccCeEE
Q 030523 102 IDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLVKRGNISKMPTIQ 157 (175)
Q Consensus 102 V~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~l~~~~~I~~~Pt~~ 157 (175)
|....+.+ ++..+...+++|+++|.+ .+.++.=||+.-.+++|.++.-+.+|..+
T Consensus 78 I~lG~Td~-~~~~v~~~le~L~~ey~G~~YhL~~kNCNHFsn~la~~Ltgk~IP~wi 133 (214)
T KOG0324|consen 78 ILLGSTDL-TEDDVRRILEELSEEYRGNSYHLLTKNCNHFSNELALQLTGKKIPSWV 133 (214)
T ss_pred EEecCCCC-CHHHHHHHHHHHHhhcCCceehhhhhccchhHHHHHHHHcCCCccHHH
Confidence 44555555 477888999999999965 48899999998777789988888888643
No 287
>PRK10026 arsenate reductase; Provisional
Probab=27.85 E-value=97 Score=22.83 Aligned_cols=33 Identities=3% Similarity=-0.056 Sum_probs=24.3
Q ss_pred EEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccC
Q 030523 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139 (175)
Q Consensus 101 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~ 139 (175)
+..|+.+.|..|+.....+++- ++.+-.+|+-+
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~------gi~~~~~d~~~ 36 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS------GTEPTIIHYLE 36 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCCcEEEeeeC
Confidence 5568899999999998877653 45666666644
No 288
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=27.00 E-value=1.6e+02 Score=22.17 Aligned_cols=74 Identities=11% Similarity=0.078 Sum_probs=50.0
Q ss_pred cCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccC---ChHHHHHHcCCCccCeEEEEe---ecccceec
Q 030523 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK---VSKDLVKRGNISKMPTIQVIF---FFPFYFTF 168 (175)
Q Consensus 95 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~---~~~~l~~~~~I~~~Pt~~~f~---~~~~~~~~ 168 (175)
...+.++.-|=+=.-+.|......|.+.+.++ +++.++.|..|- ..+ +|...||..+=++--|. ++.-||-.
T Consensus 43 ~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~-~~~~Vl~IS~DLPFAq~R-fC~aeGi~nv~~lSd~r~~~Fge~yGv~ 120 (158)
T COG2077 43 AGKKKVISVFPSIDTPVCATQVRKFNEEAAKL-GNTVVLCISMDLPFAQKR-FCGAEGIENVITLSDFRDRAFGENYGVL 120 (158)
T ss_pred CCceEEEEEccCCCCchhhHHHHHHHHHHhcc-CCcEEEEEeCCChhHHhh-hhhhcCcccceEhhhhhhhhhhHhhCEE
Confidence 34555666666777899999999999999998 668888888775 333 67777777543333322 34556655
Q ss_pred cc
Q 030523 169 LF 170 (175)
Q Consensus 169 ~~ 170 (175)
++
T Consensus 121 I~ 122 (158)
T COG2077 121 IN 122 (158)
T ss_pred ec
Confidence 54
No 289
>PF14421 LmjF365940-deam: A distinct subfamily of CDD/CDA-like deaminases
Probab=24.73 E-value=78 Score=24.56 Aligned_cols=29 Identities=17% Similarity=0.384 Sum_probs=21.8
Q ss_pred CChhhhhchHHHHHHHHHhCCCeEEEEEEccCC
Q 030523 108 WCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV 140 (175)
Q Consensus 108 wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~ 140 (175)
=|+.|+.+..++.+ +.+++.++..|-...
T Consensus 156 PCGaC~ewL~KIAe----~np~f~v~mFd~t~c 184 (193)
T PF14421_consen 156 PCGACKEWLRKIAE----ANPDFRVYMFDDTRC 184 (193)
T ss_pred cchHHHHHHHHHHH----hCCCeEEEEecCCCc
Confidence 58999888766655 558899998887644
No 290
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=23.13 E-value=4.4e+02 Score=21.94 Aligned_cols=62 Identities=18% Similarity=0.318 Sum_probs=42.9
Q ss_pred eeeEEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHH----HHHHHHHhCCCeEEEEEEcc
Q 030523 75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPK----LEKLAAEFDTKLKFYYVDVN 138 (175)
Q Consensus 75 ~~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~----l~~l~~~~~~~v~~~~vd~d 138 (175)
+....+.+.+++.+.+.++.+.+.+.+|..++| |+.-....|. ..+++-+- +-+.++++|-.
T Consensus 179 VA~~~~~~~~~l~~~i~~A~~~~Gps~I~v~sP-C~~~~~~~~~~~~~~~klAvet-g~~plye~~~g 244 (299)
T PRK11865 179 VATASIGYPEDFMEKVKKAKEVEGPAYIQVLQP-CPTGWGFPPEKTIEIGRLAVET-GYWPLFEIENG 244 (299)
T ss_pred EEEEeCCCHHHHHHHHHHHHhCCCCEEEEEECC-CCCCCCCCHHHHHHHHHHHHhc-CceeEEEEECC
Confidence 445566788888888888878899999999998 6665544442 23444443 55777777653
No 291
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=23.09 E-value=2.5e+02 Score=19.03 Aligned_cols=50 Identities=12% Similarity=0.125 Sum_probs=29.3
Q ss_pred EEcCChhhHHHHHHHhhcCCCcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEE
Q 030523 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYV 135 (175)
Q Consensus 78 ~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v 135 (175)
+++.+.+++..+- .+.+.|+-+|-...-+. ...+++++..++++..|+..
T Consensus 2 kef~~~~eL~~id----~~kr~iIgYF~~~~~~e----Y~~f~kvA~~lr~dC~F~v~ 51 (91)
T cd03070 2 KEFRNLDELNNVD----RSKRNIIGYFESKDSDE----YDNFRKVANILRDDCSFLVG 51 (91)
T ss_pred ceecCHHHHHhhC----cCCceEEEEEcCCCChh----HHHHHHHHHHHhhcCeEEEE
Confidence 4667777777733 45555555554533333 34566777777666666544
No 292
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=22.31 E-value=77 Score=21.13 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=18.9
Q ss_pred ceeeEEcCChhhHHHHHHHhhcCCCcEE
Q 030523 74 SVELEPINDSDHLDQILLRAQELSQPIL 101 (175)
Q Consensus 74 ~~~~~~i~s~~~f~~~l~~~~~~~k~vl 101 (175)
.-++.+|++.++|.+++ .+.+|++
T Consensus 50 ~gDLLPInNDdNf~kAl----ssa~plL 73 (80)
T cd06403 50 HGDLLPINNDDNFLKAL----SSANPLL 73 (80)
T ss_pred CCCEecccCcHHHHHHH----HcCCCce
Confidence 45689999999999999 4556654
No 293
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=21.75 E-value=3.1e+02 Score=19.59 Aligned_cols=73 Identities=16% Similarity=0.148 Sum_probs=54.2
Q ss_pred CCCcEEEEEEcCCChhhhhchHHHHHHHHHhC--CCeEEEEEEccCChHHHH----HHcCCC-ccCeEEEEeecccceec
Q 030523 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFD--TKLKFYYVDVNKVSKDLV----KRGNIS-KMPTIQVIFFFPFYFTF 168 (175)
Q Consensus 96 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~d~~~~~l~----~~~~I~-~~Pt~~~f~~~~~~~~~ 168 (175)
-+...+|-|--+--+.-..+.+.++++++++. ++..|+-||-|..|- +. +.|+|. .-|.+=+...-.-.++.
T Consensus 19 ~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPl-lv~yWektF~IDl~~PqIGVV~vtdadSvW 97 (120)
T cd03074 19 LDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPL-LVPYWEKTFGIDLFRPQIGVVNVTDADSVW 97 (120)
T ss_pred cCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCch-hhHHHHhhcCcccCCCceeeEeccccccee
Confidence 35677888888899999999999999999973 679999999999874 32 445654 24777666555555444
Q ss_pred c
Q 030523 169 L 169 (175)
Q Consensus 169 ~ 169 (175)
+
T Consensus 98 ~ 98 (120)
T cd03074 98 M 98 (120)
T ss_pred E
Confidence 4
No 294
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=21.18 E-value=2.9e+02 Score=22.52 Aligned_cols=63 Identities=14% Similarity=0.097 Sum_probs=42.2
Q ss_pred CcEEEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccCCh-----------------HHHHHHcCCCccCeEEEEe
Q 030523 98 QPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS-----------------KDLVKRGNISKMPTIQVIF 160 (175)
Q Consensus 98 k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-----------------~~l~~~~~I~~~Pt~~~f~ 160 (175)
.-||=.|.+..|..|=-....+.+++++ +++.-+...+|-.. ....+.++-.+++|=..+.
T Consensus 42 ~~VVELfTSQGCsSCPPAd~~l~k~a~~--~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavv 119 (261)
T COG5429 42 LGVVELFTSQGCSSCPPADANLAKLADD--PGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVV 119 (261)
T ss_pred ceEEEEeecCCcCCCChHHHHHHHhccC--CCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchhee
Confidence 4455567788999999999999988876 45655555443210 1356778888887765555
Q ss_pred ec
Q 030523 161 FF 162 (175)
Q Consensus 161 ~~ 162 (175)
++
T Consensus 120 nG 121 (261)
T COG5429 120 NG 121 (261)
T ss_pred ec
Confidence 43
No 295
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=20.10 E-value=2.6e+02 Score=21.83 Aligned_cols=37 Identities=19% Similarity=0.212 Sum_probs=26.4
Q ss_pred EEEEEcCCChhhhhchHHHHHHHHHhCCCeEEEEEEccC
Q 030523 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139 (175)
Q Consensus 101 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~ 139 (175)
|=.|.+..|+.|=.....+.+++.+ +++..+...+|-
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~--~~Vi~LafHVDY 38 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAAR--PDVIALAFHVDY 38 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHH--TSSEEEEEE-ST
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcC--CCEEEEEecCCc
Confidence 3357889999999999999999988 477777776653
Done!