Query 030524
Match_columns 175
No_of_seqs 107 out of 1674
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 15:02:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030524.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030524hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 1.9E-44 4.1E-49 238.5 18.4 168 7-174 7-175 (205)
2 KOG0078 GTP-binding protein SE 100.0 3.4E-42 7.3E-47 230.8 19.5 168 6-173 9-176 (207)
3 KOG0092 GTPase Rab5/YPT51 and 100.0 4.1E-41 8.8E-46 221.9 18.3 167 7-173 3-169 (200)
4 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 6E-41 1.3E-45 221.3 17.8 166 7-172 20-186 (221)
5 KOG0080 GTPase Rab18, small G 100.0 5.7E-41 1.2E-45 214.9 16.6 166 7-172 9-175 (209)
6 KOG0098 GTPase Rab2, small G p 100.0 7.7E-41 1.7E-45 219.2 17.2 168 6-173 3-170 (216)
7 cd04120 Rab12 Rab12 subfamily. 100.0 1.6E-39 3.4E-44 224.9 21.6 164 10-173 1-165 (202)
8 KOG0394 Ras-related GTPase [Ge 100.0 9.1E-40 2E-44 213.8 16.8 173 1-173 1-180 (210)
9 cd04121 Rab40 Rab40 subfamily. 100.0 8.5E-39 1.8E-43 219.4 21.9 164 8-172 5-168 (189)
10 cd04122 Rab14 Rab14 subfamily. 100.0 7.2E-38 1.6E-42 211.5 21.4 164 9-172 2-165 (166)
11 KOG0087 GTPase Rab11/YPT3, sma 100.0 2.5E-38 5.4E-43 211.5 17.1 166 8-173 13-178 (222)
12 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 1.4E-37 3E-42 212.4 20.9 163 7-171 3-180 (182)
13 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 1.7E-37 3.7E-42 210.7 20.7 165 9-174 2-167 (172)
14 cd04117 Rab15 Rab15 subfamily. 100.0 2.8E-37 6.1E-42 207.6 21.0 160 10-169 1-160 (161)
15 cd04133 Rop_like Rop subfamily 100.0 3E-37 6.5E-42 209.6 20.9 160 10-171 2-173 (176)
16 KOG0093 GTPase Rab3, small G p 100.0 3E-38 6.5E-43 199.6 14.8 166 8-173 20-185 (193)
17 KOG0079 GTP-binding protein H- 100.0 1.7E-38 3.6E-43 201.0 13.4 163 10-173 9-171 (198)
18 cd01865 Rab3 Rab3 subfamily. 100.0 5.1E-37 1.1E-41 207.1 21.6 163 10-172 2-164 (165)
19 cd01867 Rab8_Rab10_Rab13_like 100.0 4.9E-37 1.1E-41 207.6 21.4 164 9-172 3-166 (167)
20 KOG0086 GTPase Rab4, small G p 100.0 5.1E-38 1.1E-42 199.9 14.8 166 9-174 9-174 (214)
21 cd04131 Rnd Rnd subfamily. Th 100.0 7.8E-37 1.7E-41 208.2 20.8 161 9-171 1-176 (178)
22 cd01875 RhoG RhoG subfamily. 100.0 1E-36 2.2E-41 210.1 21.6 163 8-172 2-178 (191)
23 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 1.1E-36 2.5E-41 214.0 21.7 167 5-173 9-190 (232)
24 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 1.3E-36 2.7E-41 205.3 21.2 163 9-171 2-164 (166)
25 cd04127 Rab27A Rab27a subfamil 100.0 1E-36 2.2E-41 208.3 20.8 166 8-173 3-179 (180)
26 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 1.5E-36 3.2E-41 210.9 21.6 164 10-173 1-170 (201)
27 PF00071 Ras: Ras family; Int 100.0 1.4E-36 3.1E-41 204.3 20.7 161 11-171 1-161 (162)
28 cd04119 RJL RJL (RabJ-Like) su 100.0 1.6E-36 3.4E-41 204.9 20.8 162 10-171 1-167 (168)
29 cd04128 Spg1 Spg1p. Spg1p (se 100.0 2.7E-36 5.8E-41 206.4 20.5 162 10-172 1-167 (182)
30 cd04136 Rap_like Rap-like subf 100.0 2.6E-36 5.6E-41 203.1 19.7 161 9-170 1-162 (163)
31 cd04125 RabA_like RabA-like su 100.0 7.9E-36 1.7E-40 205.3 21.8 165 10-174 1-165 (188)
32 KOG0095 GTPase Rab30, small G 100.0 3.7E-37 8E-42 195.4 13.2 163 9-171 7-169 (213)
33 cd01868 Rab11_like Rab11-like. 100.0 1.1E-35 2.3E-40 200.6 21.1 162 9-170 3-164 (165)
34 cd04109 Rab28 Rab28 subfamily. 100.0 8.6E-36 1.9E-40 209.0 21.3 163 10-172 1-167 (215)
35 cd01866 Rab2 Rab2 subfamily. 100.0 1.5E-35 3.2E-40 200.5 21.6 164 9-172 4-167 (168)
36 PLN03110 Rab GTPase; Provision 100.0 1.6E-35 3.4E-40 207.7 22.2 165 8-172 11-175 (216)
37 cd04113 Rab4 Rab4 subfamily. 100.0 1.1E-35 2.4E-40 199.8 20.4 161 10-170 1-161 (161)
38 cd04175 Rap1 Rap1 subgroup. T 100.0 8.9E-36 1.9E-40 200.8 19.7 161 9-170 1-162 (164)
39 PTZ00369 Ras-like protein; Pro 100.0 1.5E-35 3.3E-40 204.0 21.2 166 7-173 3-169 (189)
40 cd04111 Rab39 Rab39 subfamily. 100.0 1.5E-35 3.3E-40 207.0 21.3 165 9-173 2-168 (211)
41 PLN03108 Rab family protein; P 100.0 2.4E-35 5.2E-40 206.0 22.0 170 5-174 2-171 (210)
42 cd01864 Rab19 Rab19 subfamily. 100.0 2.1E-35 4.5E-40 199.2 21.0 162 8-169 2-164 (165)
43 PLN03071 GTP-binding nuclear p 100.0 1.8E-35 3.9E-40 207.7 21.4 164 7-173 11-174 (219)
44 cd04110 Rab35 Rab35 subfamily. 100.0 2.2E-35 4.7E-40 204.7 21.5 164 8-172 5-168 (199)
45 KOG0091 GTPase Rab39, small G 100.0 7.7E-37 1.7E-41 196.5 12.9 167 8-174 7-176 (213)
46 cd04106 Rab23_lke Rab23-like s 100.0 1.6E-35 3.4E-40 199.1 20.1 159 10-169 1-161 (162)
47 cd01874 Cdc42 Cdc42 subfamily. 100.0 2.1E-35 4.5E-40 200.9 20.8 159 10-170 2-174 (175)
48 cd04112 Rab26 Rab26 subfamily. 100.0 2.1E-35 4.6E-40 203.6 21.0 164 10-173 1-165 (191)
49 cd04176 Rap2 Rap2 subgroup. T 100.0 1.8E-35 3.9E-40 199.1 20.1 161 9-170 1-162 (163)
50 KOG0088 GTPase Rab21, small G 100.0 4.2E-37 9.1E-42 196.8 11.2 166 8-173 12-177 (218)
51 cd00877 Ran Ran (Ras-related n 100.0 3.1E-35 6.6E-40 198.6 20.9 160 10-172 1-160 (166)
52 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 3.8E-35 8.3E-40 198.8 21.1 162 11-172 2-166 (170)
53 cd04144 Ras2 Ras2 subfamily. 100.0 2E-35 4.2E-40 203.6 19.5 162 11-173 1-165 (190)
54 cd01861 Rab6 Rab6 subfamily. 100.0 4.5E-35 9.7E-40 196.7 20.6 160 10-169 1-160 (161)
55 smart00175 RAB Rab subfamily o 100.0 5.8E-35 1.3E-39 196.6 21.1 163 10-172 1-163 (164)
56 cd04115 Rab33B_Rab33A Rab33B/R 100.0 4.8E-35 1E-39 198.4 20.8 162 9-170 2-168 (170)
57 cd01871 Rac1_like Rac1-like su 100.0 4.9E-35 1.1E-39 198.9 20.6 159 9-169 1-173 (174)
58 cd04116 Rab9 Rab9 subfamily. 100.0 7.2E-35 1.6E-39 197.5 21.1 162 7-169 3-169 (170)
59 cd04126 Rab20 Rab20 subfamily. 100.0 6.3E-35 1.4E-39 204.1 20.7 158 10-172 1-191 (220)
60 smart00173 RAS Ras subfamily o 100.0 6.1E-35 1.3E-39 196.7 19.7 161 10-171 1-162 (164)
61 cd04145 M_R_Ras_like M-Ras/R-R 100.0 1.3E-34 2.7E-39 195.0 20.3 161 9-170 2-163 (164)
62 cd04138 H_N_K_Ras_like H-Ras/N 100.0 1.2E-34 2.6E-39 194.6 20.2 160 9-170 1-161 (162)
63 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 1.3E-34 2.9E-39 202.6 20.9 162 9-172 1-177 (222)
64 cd04134 Rho3 Rho3 subfamily. 100.0 1.7E-34 3.6E-39 198.8 20.9 161 10-172 1-175 (189)
65 cd04140 ARHI_like ARHI subfami 100.0 1.3E-34 2.8E-39 195.4 19.9 159 10-169 2-163 (165)
66 cd01860 Rab5_related Rab5-rela 100.0 2.3E-34 5.1E-39 193.6 21.1 162 9-170 1-162 (163)
67 cd04124 RabL2 RabL2 subfamily. 100.0 2.4E-34 5.1E-39 193.4 20.8 159 10-172 1-159 (161)
68 cd04142 RRP22 RRP22 subfamily. 100.0 2.6E-34 5.7E-39 198.8 20.5 164 10-173 1-176 (198)
69 cd04101 RabL4 RabL4 (Rab-like4 100.0 6E-34 1.3E-38 191.8 20.4 160 10-170 1-163 (164)
70 smart00176 RAN Ran (Ras-relate 100.0 4.5E-34 9.9E-39 197.4 20.0 155 15-172 1-155 (200)
71 cd04123 Rab21 Rab21 subfamily. 100.0 9.6E-34 2.1E-38 190.2 21.0 161 10-170 1-161 (162)
72 cd01862 Rab7 Rab7 subfamily. 100.0 1.3E-33 2.9E-38 191.4 21.3 165 10-174 1-170 (172)
73 cd04132 Rho4_like Rho4-like su 100.0 7.9E-34 1.7E-38 195.2 20.4 162 10-173 1-169 (187)
74 smart00174 RHO Rho (Ras homolo 100.0 7.9E-34 1.7E-38 193.0 20.0 159 12-172 1-173 (174)
75 cd01873 RhoBTB RhoBTB subfamil 100.0 1E-33 2.2E-38 195.3 20.2 158 9-169 2-194 (195)
76 KOG0083 GTPase Rab26/Rab37, sm 100.0 1.4E-36 3E-41 189.4 5.4 160 13-172 1-161 (192)
77 PLN03118 Rab family protein; P 100.0 2.1E-33 4.5E-38 196.5 22.1 167 5-172 10-178 (211)
78 cd04118 Rab24 Rab24 subfamily. 100.0 2.3E-33 5.1E-38 193.7 21.7 162 10-172 1-167 (193)
79 cd04177 RSR1 RSR1 subgroup. R 100.0 2E-33 4.3E-38 190.1 20.6 162 9-171 1-164 (168)
80 cd04143 Rhes_like Rhes_like su 100.0 1.2E-33 2.7E-38 201.0 20.1 160 10-170 1-170 (247)
81 cd04103 Centaurin_gamma Centau 100.0 1.5E-33 3.2E-38 188.8 19.2 153 10-169 1-157 (158)
82 cd01863 Rab18 Rab18 subfamily. 100.0 3.5E-33 7.7E-38 187.5 21.0 159 10-169 1-160 (161)
83 cd04146 RERG_RasL11_like RERG/ 100.0 1.4E-33 2.9E-38 190.4 18.4 160 11-171 1-164 (165)
84 cd04130 Wrch_1 Wrch-1 subfamil 100.0 6.2E-33 1.3E-37 188.5 20.9 157 10-168 1-171 (173)
85 cd04114 Rab30 Rab30 subfamily. 100.0 1.2E-32 2.6E-37 186.3 21.8 164 7-170 5-168 (169)
86 cd04135 Tc10 TC10 subfamily. 100.0 7.4E-33 1.6E-37 188.2 20.9 160 10-171 1-174 (174)
87 cd01892 Miro2 Miro2 subfamily. 100.0 2.9E-33 6.2E-38 189.5 18.2 162 8-171 3-166 (169)
88 cd00154 Rab Rab family. Rab G 100.0 6.5E-33 1.4E-37 185.2 19.5 159 10-168 1-159 (159)
89 cd04148 RGK RGK subfamily. Th 100.0 8.7E-33 1.9E-37 194.3 20.1 160 10-171 1-163 (221)
90 KOG0081 GTPase Rab27, small G 100.0 4.9E-35 1.1E-39 187.5 7.4 167 8-174 8-184 (219)
91 cd04139 RalA_RalB RalA/RalB su 100.0 2.9E-32 6.3E-37 183.4 20.2 162 10-172 1-163 (164)
92 cd01870 RhoA_like RhoA-like su 100.0 1.4E-31 3.1E-36 182.1 20.8 159 10-170 2-174 (175)
93 cd00876 Ras Ras family. The R 100.0 8E-32 1.7E-36 180.5 18.9 159 11-170 1-160 (160)
94 KOG0097 GTPase Rab14, small G 100.0 2.1E-32 4.5E-37 172.5 14.4 168 7-174 9-176 (215)
95 KOG0395 Ras-related GTPase [Ge 100.0 4.4E-32 9.6E-37 186.3 17.2 164 8-172 2-166 (196)
96 PTZ00132 GTP-binding nuclear p 100.0 4.1E-31 8.8E-36 185.4 22.1 169 1-172 1-169 (215)
97 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 7.9E-33 1.7E-37 186.4 12.5 153 11-168 1-163 (164)
98 cd04149 Arf6 Arf6 subfamily. 100.0 7E-32 1.5E-36 182.5 16.8 155 7-168 7-167 (168)
99 PLN00223 ADP-ribosylation fact 100.0 1.4E-31 3.1E-36 182.9 17.8 160 7-173 15-180 (181)
100 smart00177 ARF ARF-like small 100.0 2.9E-32 6.4E-37 185.5 14.1 157 7-170 11-173 (175)
101 cd04137 RheB Rheb (Ras Homolog 100.0 4.3E-31 9.3E-36 180.5 19.9 163 10-173 2-165 (180)
102 cd04147 Ras_dva Ras-dva subfam 100.0 4.6E-31 9.9E-36 183.0 19.6 161 11-172 1-164 (198)
103 cd04158 ARD1 ARD1 subfamily. 100.0 2.4E-31 5.2E-36 180.1 17.8 156 11-173 1-163 (169)
104 cd00157 Rho Rho (Ras homology) 100.0 7.4E-31 1.6E-35 177.8 20.0 157 10-168 1-170 (171)
105 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 1.9E-31 4.1E-36 182.8 17.0 162 8-172 2-171 (183)
106 cd04129 Rho2 Rho2 subfamily. 100.0 2.2E-30 4.8E-35 178.0 20.8 162 9-172 1-174 (187)
107 cd04150 Arf1_5_like Arf1-Arf5- 100.0 8.6E-32 1.9E-36 180.5 12.9 152 10-168 1-158 (159)
108 PTZ00133 ADP-ribosylation fact 100.0 1.2E-30 2.5E-35 178.6 18.1 160 7-173 15-180 (182)
109 cd04154 Arl2 Arl2 subfamily. 100.0 6.9E-31 1.5E-35 178.5 16.8 155 7-168 12-172 (173)
110 cd04102 RabL3 RabL3 (Rab-like3 100.0 1.5E-30 3.2E-35 179.9 17.7 149 10-158 1-177 (202)
111 cd01893 Miro1 Miro1 subfamily. 100.0 5.6E-30 1.2E-34 172.9 18.4 159 10-171 1-164 (166)
112 cd04161 Arl2l1_Arl13_like Arl2 100.0 2.8E-30 6E-35 174.6 14.2 153 11-168 1-166 (167)
113 KOG0393 Ras-related small GTPa 100.0 1.4E-30 3.1E-35 175.5 12.3 164 7-172 2-180 (198)
114 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 1.3E-29 2.8E-34 172.4 16.9 154 8-168 14-173 (174)
115 cd04157 Arl6 Arl6 subfamily. 100.0 4.8E-30 1E-34 172.3 14.1 152 11-168 1-161 (162)
116 cd00879 Sar1 Sar1 subfamily. 100.0 2.2E-29 4.8E-34 173.5 16.6 157 7-170 17-190 (190)
117 KOG4252 GTP-binding protein [S 100.0 7E-32 1.5E-36 176.2 3.4 167 7-174 18-184 (246)
118 PF00025 Arf: ADP-ribosylation 100.0 4.9E-29 1.1E-33 169.5 17.4 157 7-170 12-175 (175)
119 cd04156 ARLTS1 ARLTS1 subfamil 100.0 1.4E-29 3E-34 169.9 14.6 152 11-168 1-159 (160)
120 cd04160 Arfrp1 Arfrp1 subfamil 100.0 4.6E-29 1E-33 168.4 15.7 152 11-168 1-166 (167)
121 cd00878 Arf_Arl Arf (ADP-ribos 100.0 2.4E-29 5.3E-34 168.4 14.1 151 11-168 1-157 (158)
122 cd04151 Arl1 Arl1 subfamily. 100.0 9.1E-30 2E-34 170.6 12.0 151 11-168 1-157 (158)
123 PTZ00099 rab6; Provisional 100.0 2.4E-28 5.2E-33 165.9 18.5 141 32-172 3-143 (176)
124 PLN00023 GTP-binding protein; 100.0 1.5E-28 3.2E-33 177.9 17.9 141 6-146 18-189 (334)
125 smart00178 SAR Sar1p-like memb 100.0 3.4E-28 7.4E-33 166.7 16.7 156 7-169 15-183 (184)
126 KOG0073 GTP-binding ADP-ribosy 100.0 1.1E-27 2.5E-32 154.2 15.8 163 6-173 13-180 (185)
127 cd04159 Arl10_like Arl10-like 100.0 1E-27 2.2E-32 160.1 14.9 152 11-168 1-158 (159)
128 cd01890 LepA LepA subfamily. 100.0 2.2E-27 4.8E-32 162.0 15.5 155 11-171 2-177 (179)
129 cd01897 NOG NOG1 is a nucleola 100.0 7.2E-27 1.6E-31 157.9 15.7 156 10-170 1-167 (168)
130 TIGR00231 small_GTP small GTP- 100.0 2.6E-26 5.7E-31 152.9 17.7 158 9-167 1-160 (161)
131 cd04155 Arl3 Arl3 subfamily. 100.0 2E-26 4.3E-31 156.4 17.2 153 6-168 11-172 (173)
132 cd01898 Obg Obg subfamily. Th 100.0 9.9E-27 2.1E-31 157.4 15.0 157 11-169 2-169 (170)
133 KOG0070 GTP-binding ADP-ribosy 99.9 4E-27 8.6E-32 155.2 12.1 161 5-172 13-179 (181)
134 cd01878 HflX HflX subfamily. 99.9 1.7E-26 3.6E-31 160.9 14.5 155 8-169 40-203 (204)
135 PRK12299 obgE GTPase CgtA; Rev 99.9 6.8E-26 1.5E-30 167.2 17.2 162 10-172 159-329 (335)
136 cd04171 SelB SelB subfamily. 99.9 4.3E-26 9.4E-31 153.3 14.9 151 11-168 2-163 (164)
137 COG1100 GTPase SAR1 and relate 99.9 2.2E-25 4.7E-30 156.8 18.7 164 9-172 5-186 (219)
138 cd00882 Ras_like_GTPase Ras-li 99.9 2.7E-25 5.9E-30 146.8 16.6 153 14-167 1-156 (157)
139 TIGR02528 EutP ethanolamine ut 99.9 2.7E-26 6E-31 151.0 11.5 134 11-167 2-141 (142)
140 KOG3883 Ras family small GTPas 99.9 5.8E-25 1.3E-29 140.3 15.5 166 8-174 8-178 (198)
141 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 3.3E-25 7.1E-30 149.7 14.1 157 11-171 2-166 (168)
142 cd01879 FeoB Ferrous iron tran 99.9 8.1E-25 1.8E-29 146.3 15.5 148 14-170 1-156 (158)
143 PRK04213 GTP-binding protein; 99.9 9.7E-26 2.1E-30 156.6 10.9 153 7-173 7-194 (201)
144 cd01891 TypA_BipA TypA (tyrosi 99.9 2.6E-25 5.6E-30 153.7 12.1 148 10-161 3-172 (194)
145 PF02421 FeoB_N: Ferrous iron 99.9 3.1E-25 6.8E-30 146.1 10.6 148 10-166 1-156 (156)
146 TIGR02729 Obg_CgtA Obg family 99.9 2.6E-24 5.5E-29 158.7 16.2 158 10-170 158-328 (329)
147 PF08477 Miro: Miro-like prote 99.9 1.2E-24 2.5E-29 139.1 12.2 114 11-125 1-119 (119)
148 TIGR03156 GTP_HflX GTP-binding 99.9 3.2E-24 6.9E-29 159.5 16.2 153 9-169 189-350 (351)
149 cd01881 Obg_like The Obg-like 99.9 1.9E-24 4.1E-29 146.9 12.7 155 14-169 1-175 (176)
150 TIGR00450 mnmE_trmE_thdF tRNA 99.9 1.4E-23 3.1E-28 160.1 17.7 151 8-172 202-361 (442)
151 cd04164 trmE TrmE (MnmE, ThdF, 99.9 1.7E-23 3.7E-28 139.5 15.5 146 10-170 2-156 (157)
152 PRK15494 era GTPase Era; Provi 99.9 2.1E-23 4.6E-28 154.8 17.4 158 5-172 48-217 (339)
153 KOG0071 GTP-binding ADP-ribosy 99.9 1.2E-23 2.5E-28 132.5 13.3 159 7-172 15-179 (180)
154 TIGR00436 era GTP-binding prot 99.9 9.5E-24 2.1E-28 152.7 15.0 154 11-172 2-165 (270)
155 TIGR01393 lepA GTP-binding pro 99.9 1.8E-23 4E-28 164.6 16.3 158 9-172 3-181 (595)
156 PRK05291 trmE tRNA modificatio 99.9 1.6E-23 3.4E-28 160.6 15.0 148 8-171 214-370 (449)
157 TIGR00487 IF-2 translation ini 99.9 3.4E-23 7.4E-28 162.4 17.2 154 7-168 85-247 (587)
158 cd01889 SelB_euk SelB subfamil 99.9 9.4E-24 2E-28 145.7 12.4 160 10-173 1-188 (192)
159 PRK15467 ethanolamine utilizat 99.9 1.2E-23 2.6E-28 140.7 12.2 140 11-172 3-148 (158)
160 KOG1673 Ras GTPases [General f 99.9 1.2E-23 2.6E-28 134.7 10.9 166 5-171 16-186 (205)
161 cd00881 GTP_translation_factor 99.9 2.2E-23 4.7E-28 143.2 13.1 155 11-171 1-187 (189)
162 cd01894 EngA1 EngA1 subfamily. 99.9 3.4E-23 7.3E-28 138.2 13.3 147 13-170 1-157 (157)
163 PRK03003 GTP-binding protein D 99.9 3E-23 6.6E-28 160.4 14.9 158 8-171 210-382 (472)
164 PRK11058 GTPase HflX; Provisio 99.9 5.3E-23 1.2E-27 156.2 15.8 157 10-172 198-363 (426)
165 PRK12297 obgE GTPase CgtA; Rev 99.9 2.8E-22 6E-27 151.6 18.3 156 11-172 160-328 (424)
166 PRK00454 engB GTP-binding prot 99.9 1E-22 2.2E-27 140.8 14.4 163 3-172 18-195 (196)
167 PRK03003 GTP-binding protein D 99.9 1.1E-22 2.4E-27 157.2 16.1 153 9-172 38-200 (472)
168 KOG0075 GTP-binding ADP-ribosy 99.9 4.4E-24 9.6E-29 135.4 5.7 154 9-171 20-182 (186)
169 cd01895 EngA2 EngA2 subfamily. 99.9 6.5E-22 1.4E-26 133.8 16.8 155 9-169 2-173 (174)
170 cd04163 Era Era subfamily. Er 99.9 2.4E-22 5.2E-27 135.0 14.5 157 8-169 2-167 (168)
171 KOG0076 GTP-binding ADP-ribosy 99.9 1.3E-23 2.7E-28 136.9 7.8 166 4-173 12-189 (197)
172 TIGR03594 GTPase_EngA ribosome 99.9 6.5E-22 1.4E-26 151.9 17.9 157 8-171 171-344 (429)
173 TIGR00475 selB selenocysteine- 99.9 2E-22 4.3E-27 158.6 15.2 156 10-171 1-166 (581)
174 cd01888 eIF2_gamma eIF2-gamma 99.9 1.6E-22 3.4E-27 140.6 13.0 161 10-172 1-200 (203)
175 CHL00189 infB translation init 99.9 2.3E-22 5.1E-27 160.1 15.5 157 7-170 242-409 (742)
176 KOG0096 GTPase Ran/TC4/GSP1 (n 99.9 6.9E-23 1.5E-27 135.3 10.3 163 6-171 7-169 (216)
177 PRK05306 infB translation init 99.9 4.7E-22 1E-26 159.6 17.1 153 7-168 288-449 (787)
178 PRK12296 obgE GTPase CgtA; Rev 99.9 4E-22 8.8E-27 152.6 16.0 161 9-172 159-341 (500)
179 cd04105 SR_beta Signal recogni 99.9 5.5E-22 1.2E-26 137.8 14.8 117 11-128 2-123 (203)
180 TIGR03598 GTPase_YsxC ribosome 99.9 2.5E-22 5.4E-27 137.1 12.7 151 3-160 12-179 (179)
181 PRK12298 obgE GTPase CgtA; Rev 99.9 8.9E-22 1.9E-26 148.1 16.3 160 11-172 161-334 (390)
182 PRK00089 era GTPase Era; Revie 99.9 5.2E-22 1.1E-26 145.3 14.7 159 8-171 4-171 (292)
183 PRK05433 GTP-binding protein L 99.9 7.6E-22 1.6E-26 155.6 16.3 160 7-172 5-185 (600)
184 TIGR00437 feoB ferrous iron tr 99.9 7E-22 1.5E-26 155.7 15.5 145 16-169 1-153 (591)
185 PRK00093 GTP-binding protein D 99.9 1.8E-21 3.9E-26 149.6 15.3 146 10-168 2-159 (435)
186 cd00880 Era_like Era (E. coli 99.9 1.5E-21 3.2E-26 130.1 12.9 151 14-169 1-162 (163)
187 PF00009 GTP_EFTU: Elongation 99.9 2.5E-22 5.5E-27 138.1 9.3 159 8-170 2-186 (188)
188 PRK09554 feoB ferrous iron tra 99.9 7.4E-21 1.6E-25 153.2 17.6 154 8-170 2-167 (772)
189 PRK12317 elongation factor 1-a 99.9 1.4E-21 3E-26 149.6 12.5 158 5-163 2-197 (425)
190 KOG4423 GTP-binding protein-li 99.9 6.5E-24 1.4E-28 139.7 -1.3 166 8-173 24-196 (229)
191 TIGR03594 GTPase_EngA ribosome 99.9 1.1E-20 2.3E-25 145.1 15.7 148 11-171 1-160 (429)
192 KOG0074 GTP-binding ADP-ribosy 99.9 2.4E-21 5.2E-26 122.3 9.7 160 6-171 14-179 (185)
193 TIGR00483 EF-1_alpha translati 99.9 6.2E-21 1.3E-25 146.1 13.3 157 6-163 4-199 (426)
194 COG1159 Era GTPase [General fu 99.9 1.2E-20 2.6E-25 133.7 13.2 162 6-172 3-173 (298)
195 PRK00093 GTP-binding protein D 99.9 2.9E-20 6.4E-25 142.9 16.3 156 8-171 172-344 (435)
196 TIGR00491 aIF-2 translation in 99.9 2.6E-20 5.7E-25 146.1 16.1 155 8-169 3-214 (590)
197 cd01896 DRG The developmentall 99.9 8.2E-20 1.8E-24 129.3 16.4 151 11-170 2-225 (233)
198 PRK09518 bifunctional cytidyla 99.9 3.3E-20 7.2E-25 149.6 15.9 157 8-172 449-622 (712)
199 TIGR01394 TypA_BipA GTP-bindin 99.8 2.1E-20 4.5E-25 147.2 13.4 159 10-172 2-192 (594)
200 COG2229 Predicted GTPase [Gene 99.8 1.7E-19 3.8E-24 119.1 15.1 159 3-169 4-176 (187)
201 PRK10218 GTP-binding protein; 99.8 9.7E-20 2.1E-24 143.4 16.6 159 9-171 5-195 (607)
202 PRK09518 bifunctional cytidyla 99.8 1.5E-19 3.2E-24 145.9 17.6 152 8-171 274-436 (712)
203 TIGR03680 eif2g_arch translati 99.8 2.7E-20 5.8E-25 141.5 12.5 163 7-171 2-196 (406)
204 cd04166 CysN_ATPS CysN_ATPS su 99.8 3.5E-20 7.7E-25 129.3 10.7 146 11-161 1-184 (208)
205 PRK10512 selenocysteinyl-tRNA- 99.8 1.2E-19 2.6E-24 143.5 14.8 156 11-171 2-166 (614)
206 PRK04004 translation initiatio 99.8 2.6E-19 5.7E-24 140.9 16.6 155 7-168 4-215 (586)
207 cd01876 YihA_EngB The YihA (En 99.8 1.2E-19 2.7E-24 122.1 12.7 150 11-169 1-169 (170)
208 KOG0072 GTP-binding ADP-ribosy 99.8 5.1E-21 1.1E-25 121.2 5.3 159 8-173 17-181 (182)
209 COG0486 ThdF Predicted GTPase 99.8 2.6E-19 5.5E-24 133.9 15.1 153 8-172 216-377 (454)
210 cd01884 EF_Tu EF-Tu subfamily. 99.8 3.5E-19 7.6E-24 122.8 13.9 147 9-159 2-171 (195)
211 PRK04000 translation initiatio 99.8 2E-19 4.4E-24 136.8 13.7 165 5-171 5-201 (411)
212 cd04168 TetM_like Tet(M)-like 99.8 1.7E-19 3.7E-24 127.9 12.1 113 11-127 1-129 (237)
213 COG1160 Predicted GTPases [Gen 99.8 2E-19 4.4E-24 134.1 12.3 150 10-170 4-164 (444)
214 PF04670 Gtr1_RagA: Gtr1/RagA 99.8 1.9E-19 4.2E-24 126.1 11.5 161 11-174 1-179 (232)
215 PF10662 PduV-EutP: Ethanolami 99.8 3.8E-19 8.2E-24 114.9 11.1 135 11-167 3-142 (143)
216 cd04167 Snu114p Snu114p subfam 99.8 3.3E-19 7.1E-24 124.9 11.7 113 11-127 2-136 (213)
217 KOG0077 Vesicle coat complex C 99.8 7.2E-20 1.6E-24 118.6 7.3 156 8-170 19-192 (193)
218 COG1160 Predicted GTPases [Gen 99.8 3.3E-18 7.2E-23 127.6 16.6 158 8-171 177-351 (444)
219 KOG1423 Ras-like GTPase ERA [C 99.8 7.4E-19 1.6E-23 124.7 12.3 163 5-171 68-271 (379)
220 PRK12736 elongation factor Tu; 99.8 1.6E-18 3.4E-23 131.4 14.6 161 6-170 9-200 (394)
221 cd01883 EF1_alpha Eukaryotic e 99.8 4.3E-19 9.3E-24 124.8 10.7 148 11-160 1-194 (219)
222 COG0370 FeoB Fe2+ transport sy 99.8 1.7E-18 3.7E-23 134.5 14.6 157 8-173 2-166 (653)
223 PRK12735 elongation factor Tu; 99.8 1.9E-18 4.1E-23 131.1 13.6 161 6-170 9-202 (396)
224 TIGR00485 EF-Tu translation el 99.8 4E-18 8.6E-23 129.4 13.8 148 6-157 9-179 (394)
225 cd01850 CDC_Septin CDC/Septin. 99.8 8.2E-18 1.8E-22 121.7 14.0 142 9-155 4-186 (276)
226 cd04165 GTPBP1_like GTPBP1-lik 99.8 8.7E-18 1.9E-22 118.2 13.7 155 11-169 1-221 (224)
227 COG0532 InfB Translation initi 99.8 2.1E-17 4.6E-22 125.2 16.3 157 7-170 3-169 (509)
228 KOG1707 Predicted Ras related/ 99.8 1.3E-18 2.9E-23 132.3 9.3 168 1-170 1-174 (625)
229 COG0218 Predicted GTPase [Gene 99.8 2.3E-17 4.9E-22 111.3 13.7 162 4-172 19-198 (200)
230 cd04169 RF3 RF3 subfamily. Pe 99.8 2.2E-17 4.9E-22 118.9 14.2 115 10-128 3-137 (267)
231 cd01885 EF2 EF2 (for archaea a 99.8 1.1E-17 2.4E-22 117.2 11.7 113 11-127 2-138 (222)
232 CHL00071 tufA elongation facto 99.8 2.7E-17 5.8E-22 125.3 14.3 150 6-159 9-181 (409)
233 cd04104 p47_IIGP_like p47 (47- 99.8 4.4E-17 9.6E-22 112.8 13.5 156 9-172 1-185 (197)
234 PLN00043 elongation factor 1-a 99.8 9.7E-18 2.1E-22 128.6 10.6 152 6-161 4-203 (447)
235 KOG1489 Predicted GTP-binding 99.7 6.3E-17 1.4E-21 115.5 13.7 155 10-169 197-365 (366)
236 PRK05124 cysN sulfate adenylyl 99.7 1.3E-17 2.9E-22 128.7 11.2 154 6-162 24-216 (474)
237 KOG0462 Elongation factor-type 99.7 3.8E-17 8.3E-22 123.8 12.9 163 7-173 58-237 (650)
238 COG2262 HflX GTPases [General 99.7 1.5E-16 3.2E-21 117.4 15.4 159 8-172 191-357 (411)
239 COG1084 Predicted GTPase [Gene 99.7 8.8E-17 1.9E-21 115.4 13.9 159 7-172 166-337 (346)
240 PLN03126 Elongation factor Tu; 99.7 5.2E-17 1.1E-21 125.2 12.9 148 7-158 79-249 (478)
241 PRK00741 prfC peptide chain re 99.7 6E-17 1.3E-21 126.2 13.3 117 7-127 8-144 (526)
242 PTZ00141 elongation factor 1- 99.7 4.2E-17 9E-22 125.1 11.8 153 6-161 4-203 (446)
243 TIGR02034 CysN sulfate adenyly 99.7 4.2E-17 9E-22 124.1 11.7 149 10-161 1-187 (406)
244 PRK00049 elongation factor Tu; 99.7 1.7E-16 3.6E-21 120.5 14.9 160 6-169 9-201 (396)
245 COG5256 TEF1 Translation elong 99.7 3.7E-17 8E-22 120.5 10.6 157 5-161 3-201 (428)
246 cd04170 EF-G_bact Elongation f 99.7 1.6E-17 3.4E-22 120.2 8.5 131 11-147 1-147 (268)
247 PRK05506 bifunctional sulfate 99.7 8.4E-17 1.8E-21 128.6 12.9 154 5-161 20-211 (632)
248 PLN03127 Elongation factor Tu; 99.7 1.8E-16 3.9E-21 121.6 13.7 159 6-170 58-251 (447)
249 cd01886 EF-G Elongation factor 99.7 1.1E-16 2.3E-21 115.5 11.7 112 11-128 1-130 (270)
250 COG0481 LepA Membrane GTPase L 99.7 2.3E-16 5.1E-21 118.0 13.3 166 2-173 2-188 (603)
251 KOG1145 Mitochondrial translat 99.7 5.1E-16 1.1E-20 117.8 15.1 156 7-170 151-315 (683)
252 PRK13351 elongation factor G; 99.7 2.4E-16 5.2E-21 127.2 12.9 118 7-128 6-139 (687)
253 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 1.1E-15 2.3E-20 105.9 13.6 159 10-172 1-185 (196)
254 PF09439 SRPRB: Signal recogni 99.7 4.4E-17 9.6E-22 109.8 6.1 118 9-129 3-127 (181)
255 PTZ00327 eukaryotic translatio 99.7 4.8E-16 1E-20 119.2 12.1 163 6-170 31-232 (460)
256 PF01926 MMR_HSR1: 50S ribosom 99.7 7.2E-16 1.6E-20 98.0 10.4 106 11-123 1-116 (116)
257 cd01899 Ygr210 Ygr210 subfamil 99.7 1.9E-15 4.1E-20 111.1 13.4 81 12-92 1-110 (318)
258 COG0536 Obg Predicted GTPase [ 99.7 1.4E-15 3E-20 109.8 12.2 160 11-172 161-334 (369)
259 KOG1191 Mitochondrial GTPase [ 99.7 1.1E-15 2.4E-20 114.8 10.3 162 8-171 267-450 (531)
260 TIGR00484 EF-G translation elo 99.6 4.1E-15 8.9E-20 120.0 13.8 117 6-128 7-141 (689)
261 PRK12739 elongation factor G; 99.6 7.4E-15 1.6E-19 118.5 14.8 116 7-128 6-139 (691)
262 TIGR00503 prfC peptide chain r 99.6 4.7E-15 1E-19 115.8 12.5 118 7-128 9-146 (527)
263 COG3596 Predicted GTPase [Gene 99.6 2E-15 4.3E-20 106.2 9.0 162 6-171 36-222 (296)
264 COG1163 DRG Predicted GTPase [ 99.6 5.7E-14 1.2E-18 100.9 15.3 154 8-170 62-288 (365)
265 COG2895 CysN GTPases - Sulfate 99.6 1.5E-14 3.2E-19 104.9 12.4 152 6-160 3-192 (431)
266 PRK12740 elongation factor G; 99.6 5E-14 1.1E-18 113.7 14.1 107 15-127 1-125 (668)
267 PRK00007 elongation factor G; 99.6 4E-14 8.7E-19 114.3 13.3 116 7-128 8-141 (693)
268 PRK09602 translation-associate 99.6 9.9E-14 2.1E-18 104.9 14.6 82 10-92 2-113 (396)
269 cd00066 G-alpha G protein alph 99.6 8.9E-14 1.9E-18 102.7 13.0 117 56-172 159-312 (317)
270 KOG1707 Predicted Ras related/ 99.6 1.5E-13 3.2E-18 105.3 14.3 161 6-171 422-583 (625)
271 PRK09866 hypothetical protein; 99.6 2.9E-13 6.3E-18 105.8 16.0 109 58-168 230-350 (741)
272 PRK14845 translation initiatio 99.6 1.3E-13 2.8E-18 113.9 14.8 142 21-169 473-671 (1049)
273 PF04548 AIG1: AIG1 family; I 99.6 3.6E-14 7.9E-19 99.3 9.7 159 10-172 1-187 (212)
274 COG4917 EutP Ethanolamine util 99.6 1.4E-14 3E-19 90.0 6.6 136 11-168 3-143 (148)
275 TIGR00991 3a0901s02IAP34 GTP-b 99.6 3.6E-13 7.7E-18 97.8 14.5 122 5-129 34-168 (313)
276 TIGR00157 ribosome small subun 99.5 4.3E-14 9.2E-19 100.8 9.6 96 69-168 24-120 (245)
277 cd01853 Toc34_like Toc34-like 99.5 2.3E-13 5E-18 97.0 13.2 121 6-129 28-164 (249)
278 KOG0458 Elongation factor 1 al 99.5 7.3E-14 1.6E-18 106.9 11.1 154 7-161 175-372 (603)
279 TIGR00101 ureG urease accessor 99.5 3.4E-13 7.4E-18 93.3 13.5 104 58-172 92-197 (199)
280 smart00010 small_GTPase Small 99.5 1.6E-13 3.5E-18 87.8 10.8 114 10-160 1-115 (124)
281 TIGR00490 aEF-2 translation el 99.5 3.8E-14 8.3E-19 114.8 9.5 116 8-127 18-151 (720)
282 KOG0090 Signal recognition par 99.5 1E-13 2.2E-18 94.0 9.2 155 9-169 38-237 (238)
283 smart00275 G_alpha G protein a 99.5 3.2E-13 7E-18 100.6 12.6 116 57-172 183-335 (342)
284 COG1217 TypA Predicted membran 99.5 1.9E-13 4.1E-18 102.4 11.1 159 10-172 6-196 (603)
285 KOG1490 GTP-binding protein CR 99.5 1.6E-13 3.5E-18 103.5 9.3 164 6-172 165-342 (620)
286 KOG3905 Dynein light intermedi 99.5 1.6E-12 3.5E-17 93.6 12.6 159 9-170 52-289 (473)
287 PRK13768 GTPase; Provisional 99.5 1.9E-13 4.2E-18 97.9 8.0 111 59-171 98-247 (253)
288 PF05783 DLIC: Dynein light in 99.5 3.6E-12 7.9E-17 97.9 14.8 161 8-171 24-264 (472)
289 TIGR00073 hypB hydrogenase acc 99.5 1.2E-12 2.5E-17 91.4 11.1 150 7-169 20-205 (207)
290 PF00735 Septin: Septin; Inte 99.4 9.6E-13 2.1E-17 95.4 10.1 140 9-152 4-182 (281)
291 PLN00116 translation elongatio 99.4 7.1E-13 1.5E-17 109.0 10.2 116 8-127 18-163 (843)
292 PTZ00416 elongation factor 2; 99.4 9.2E-13 2E-17 108.2 10.1 116 8-127 18-157 (836)
293 PRK09435 membrane ATPase/prote 99.4 3.4E-12 7.3E-17 94.2 10.9 104 57-171 148-260 (332)
294 COG0378 HypB Ni2+-binding GTPa 99.4 1E-11 2.2E-16 83.6 12.1 150 10-170 14-200 (202)
295 PF03029 ATP_bind_1: Conserved 99.4 5.3E-14 1.1E-18 99.7 1.2 112 59-170 92-236 (238)
296 PTZ00258 GTP-binding protein; 99.4 6.9E-12 1.5E-16 94.2 12.4 86 7-92 19-126 (390)
297 cd01882 BMS1 Bms1. Bms1 is an 99.4 9.7E-12 2.1E-16 87.8 11.8 139 6-156 36-181 (225)
298 COG5257 GCD11 Translation init 99.4 3.3E-12 7.2E-17 91.9 8.9 164 7-172 8-203 (415)
299 PF05049 IIGP: Interferon-indu 99.4 5.5E-12 1.2E-16 93.9 10.2 156 8-170 34-217 (376)
300 KOG1144 Translation initiation 99.4 6.5E-12 1.4E-16 98.8 10.4 164 5-172 471-688 (1064)
301 TIGR02836 spore_IV_A stage IV 99.4 3.3E-11 7.2E-16 90.1 13.3 155 8-167 16-233 (492)
302 PRK07560 elongation factor EF- 99.4 2.4E-12 5.2E-17 104.7 8.0 116 8-127 19-152 (731)
303 KOG3886 GTP-binding protein [S 99.4 3.3E-12 7.2E-17 87.8 7.3 160 8-170 3-177 (295)
304 COG5019 CDC3 Septin family pro 99.4 2.4E-11 5.2E-16 89.0 12.0 146 8-159 22-207 (373)
305 KOG1532 GTPase XAB1, interacts 99.3 5.8E-12 1.3E-16 88.8 8.1 115 56-172 114-265 (366)
306 PRK09601 GTP-binding protein Y 99.3 4.4E-11 9.6E-16 89.0 13.2 83 10-92 3-107 (364)
307 KOG0082 G-protein alpha subuni 99.3 3.7E-11 8E-16 88.5 12.5 117 57-173 194-346 (354)
308 KOG0705 GTPase-activating prot 99.3 4.7E-12 1E-16 96.6 8.0 161 5-172 26-190 (749)
309 KOG0461 Selenocysteine-specifi 99.3 5.4E-11 1.2E-15 86.6 11.9 158 8-172 6-194 (522)
310 TIGR00750 lao LAO/AO transport 99.3 2.8E-11 6.1E-16 89.0 10.7 103 57-170 126-237 (300)
311 PF00350 Dynamin_N: Dynamin fa 99.3 1.1E-11 2.5E-16 83.6 7.5 63 59-124 102-168 (168)
312 COG0050 TufB GTPases - transla 99.3 1.4E-11 3.1E-16 87.7 7.9 146 6-155 9-177 (394)
313 TIGR00993 3a0901s04IAP86 chlor 99.3 8.3E-11 1.8E-15 92.6 12.6 119 8-128 117-250 (763)
314 COG0480 FusA Translation elong 99.3 6.9E-11 1.5E-15 94.7 12.1 119 6-128 7-142 (697)
315 cd01900 YchF YchF subfamily. 99.3 8.8E-11 1.9E-15 84.7 10.4 81 12-92 1-103 (274)
316 COG3276 SelB Selenocysteine-sp 99.2 1.2E-10 2.7E-15 87.1 10.4 154 11-170 2-161 (447)
317 KOG2655 Septin family protein 99.2 2.6E-10 5.5E-15 84.2 11.8 142 9-154 21-200 (366)
318 PRK10463 hydrogenase nickel in 99.2 7E-11 1.5E-15 85.3 8.3 56 115-170 231-288 (290)
319 KOG1547 Septin CDC10 and relat 99.2 1.6E-10 3.4E-15 80.2 9.2 151 9-164 46-236 (336)
320 COG1703 ArgK Putative periplas 99.2 1.6E-10 3.4E-15 82.7 9.0 105 55-170 141-253 (323)
321 smart00053 DYNc Dynamin, GTPas 99.2 3.6E-10 7.7E-15 80.1 10.6 68 58-128 125-206 (240)
322 PF03308 ArgK: ArgK protein; 99.2 2E-11 4.3E-16 86.0 3.9 151 8-170 28-229 (266)
323 COG4108 PrfC Peptide chain rel 99.2 3.5E-10 7.6E-15 84.6 10.4 116 7-127 10-146 (528)
324 KOG3887 Predicted small GTPase 99.2 2.2E-10 4.7E-15 79.7 8.4 162 10-174 28-205 (347)
325 KOG0468 U5 snRNP-specific prot 99.1 3.3E-10 7.1E-15 88.6 9.4 115 8-126 127-261 (971)
326 PRK12289 GTPase RsgA; Reviewed 99.1 1.4E-09 3.1E-14 81.2 10.6 92 73-169 81-173 (352)
327 KOG1486 GTP-binding protein DR 99.1 2.2E-08 4.8E-13 70.3 15.1 101 8-110 61-169 (364)
328 cd01855 YqeH YqeH. YqeH is an 99.1 1.1E-09 2.3E-14 75.5 8.6 93 71-170 24-124 (190)
329 PF00503 G-alpha: G-protein al 99.1 5.6E-09 1.2E-13 79.6 13.2 113 58-170 236-389 (389)
330 COG0012 Predicted GTPase, prob 99.1 1.5E-08 3.2E-13 75.0 14.3 84 9-92 2-108 (372)
331 KOG0410 Predicted GTP binding 99.0 3.3E-10 7.2E-15 81.8 5.1 153 7-172 176-342 (410)
332 cd01854 YjeQ_engC YjeQ/EngC. 99.0 1.5E-09 3.2E-14 79.4 8.6 87 77-168 74-161 (287)
333 cd01859 MJ1464 MJ1464. This f 99.0 8.4E-10 1.8E-14 73.6 6.3 93 72-170 3-95 (156)
334 PRK00098 GTPase RsgA; Reviewed 99.0 1.9E-09 4.2E-14 79.2 8.2 86 79-168 78-164 (298)
335 KOG0460 Mitochondrial translat 99.0 2E-09 4.2E-14 78.4 7.0 147 5-155 50-219 (449)
336 cd01857 HSR1_MMR1 HSR1/MMR1. 99.0 1.8E-09 3.9E-14 70.9 6.3 54 11-68 85-138 (141)
337 PRK12288 GTPase RsgA; Reviewed 99.0 5.3E-09 1.2E-13 78.1 9.3 88 79-169 118-206 (347)
338 COG5258 GTPBP1 GTPase [General 98.9 3.5E-09 7.6E-14 78.3 6.5 157 6-166 114-334 (527)
339 TIGR03597 GTPase_YqeH ribosome 98.9 9.7E-09 2.1E-13 77.4 8.3 95 68-169 50-151 (360)
340 cd01858 NGP_1 NGP-1. Autoanti 98.9 7.7E-09 1.7E-13 69.1 6.9 56 8-67 101-156 (157)
341 cd04178 Nucleostemin_like Nucl 98.9 9E-09 1.9E-13 69.7 6.8 54 9-67 117-171 (172)
342 KOG0467 Translation elongation 98.8 1.7E-08 3.8E-13 80.1 8.0 120 2-125 2-135 (887)
343 KOG0085 G protein subunit Galp 98.8 8E-09 1.7E-13 71.6 4.5 117 56-172 197-350 (359)
344 cd01856 YlqF YlqF. Proteins o 98.8 2.7E-08 5.8E-13 67.4 7.0 57 8-68 114-170 (171)
345 COG5192 BMS1 GTP-binding prote 98.8 7.6E-08 1.6E-12 74.7 10.0 138 5-155 65-210 (1077)
346 KOG0099 G protein subunit Galp 98.8 4.9E-08 1.1E-12 68.9 8.1 73 55-127 199-282 (379)
347 cd01858 NGP_1 NGP-1. Autoanti 98.8 3.5E-08 7.7E-13 65.9 7.2 87 79-170 6-94 (157)
348 TIGR03348 VI_IcmF type VI secr 98.8 6.7E-08 1.5E-12 82.7 10.5 112 12-128 114-257 (1169)
349 KOG2486 Predicted GTPase [Gene 98.8 1.3E-08 2.8E-13 72.3 5.0 157 6-169 133-314 (320)
350 cd01855 YqeH YqeH. YqeH is an 98.8 2E-08 4.3E-13 69.2 5.9 56 9-67 127-189 (190)
351 cd01859 MJ1464 MJ1464. This f 98.8 4.5E-08 9.8E-13 65.2 7.2 56 8-67 100-155 (156)
352 PRK09563 rbgA GTPase YlqF; Rev 98.7 5.7E-08 1.2E-12 71.1 8.0 56 8-68 120-176 (287)
353 KOG1143 Predicted translation 98.7 4.8E-08 1E-12 72.3 7.5 155 8-166 166-383 (591)
354 KOG4273 Uncharacterized conser 98.7 3.3E-07 7.1E-12 64.5 11.2 159 10-170 5-221 (418)
355 TIGR03596 GTPase_YlqF ribosome 98.7 5.5E-08 1.2E-12 70.9 7.4 57 8-68 117-173 (276)
356 COG1161 Predicted GTPases [Gen 98.7 5.6E-08 1.2E-12 72.2 6.7 56 8-67 131-186 (322)
357 cd01849 YlqF_related_GTPase Yl 98.7 1.8E-07 3.9E-12 62.3 8.0 83 83-169 1-83 (155)
358 KOG1954 Endocytosis/signaling 98.7 1.1E-07 2.4E-12 70.3 7.3 121 8-131 57-228 (532)
359 KOG0448 Mitofusin 1 GTPase, in 98.6 5.9E-07 1.3E-11 71.0 11.3 144 8-155 108-310 (749)
360 PF03193 DUF258: Protein of un 98.6 6.4E-08 1.4E-12 64.3 4.6 59 10-71 36-100 (161)
361 cd01856 YlqF YlqF. Proteins o 98.6 1.1E-07 2.4E-12 64.4 5.9 97 66-170 3-100 (171)
362 cd01849 YlqF_related_GTPase Yl 98.6 2.1E-07 4.6E-12 62.0 6.9 55 8-67 99-154 (155)
363 KOG0464 Elongation factor G [T 98.6 7.4E-08 1.6E-12 72.2 4.7 116 8-127 36-167 (753)
364 TIGR00092 GTP-binding protein 98.6 2.3E-07 4.9E-12 69.5 7.1 83 10-92 3-108 (368)
365 cd01857 HSR1_MMR1 HSR1/MMR1. 98.6 2.2E-07 4.8E-12 60.9 6.3 76 77-158 7-84 (141)
366 PRK10416 signal recognition pa 98.6 1E-06 2.2E-11 65.3 10.2 143 8-162 113-301 (318)
367 PF09547 Spore_IV_A: Stage IV 98.5 2.7E-06 5.8E-11 64.3 12.1 154 9-167 17-233 (492)
368 KOG0463 GTP-binding protein GP 98.5 1.3E-07 2.7E-12 70.2 4.9 153 7-163 131-350 (641)
369 KOG0465 Mitochondrial elongati 98.5 4.2E-07 9.1E-12 71.0 7.9 116 8-127 38-169 (721)
370 PRK14974 cell division protein 98.5 8.5E-07 1.8E-11 66.1 9.0 95 58-164 223-323 (336)
371 TIGR03596 GTPase_YlqF ribosome 98.5 4.6E-07 1E-11 66.0 7.5 98 66-171 5-103 (276)
372 PRK12288 GTPase RsgA; Reviewed 98.5 2.8E-07 6E-12 69.1 6.2 59 11-72 207-271 (347)
373 KOG1491 Predicted GTP-binding 98.5 5.8E-07 1.3E-11 65.7 7.5 87 6-92 17-125 (391)
374 COG1618 Predicted nucleotide k 98.5 1.3E-05 2.7E-10 53.0 13.0 111 8-125 4-141 (179)
375 cd01851 GBP Guanylate-binding 98.5 9.6E-07 2.1E-11 62.4 8.4 85 8-92 6-102 (224)
376 KOG3859 Septins (P-loop GTPase 98.5 5.3E-07 1.1E-11 64.4 6.9 116 9-128 42-190 (406)
377 cd03112 CobW_like The function 98.5 9.7E-07 2.1E-11 59.0 7.7 21 12-32 3-23 (158)
378 KOG0447 Dynamin-like GTP bindi 98.5 2.5E-06 5.4E-11 66.3 10.5 82 59-143 413-508 (980)
379 TIGR00064 ftsY signal recognit 98.5 9.8E-07 2.1E-11 64.1 7.9 95 57-163 154-260 (272)
380 PRK01889 GTPase RsgA; Reviewed 98.4 1.3E-06 2.8E-11 65.8 8.2 83 79-167 110-193 (356)
381 KOG0466 Translation initiation 98.4 6.8E-08 1.5E-12 69.7 1.2 163 7-171 36-241 (466)
382 PRK12289 GTPase RsgA; Reviewed 98.4 5.9E-07 1.3E-11 67.4 5.8 23 11-33 174-196 (352)
383 PF03266 NTPase_1: NTPase; In 98.4 2.3E-06 4.9E-11 57.7 8.0 135 11-159 1-163 (168)
384 PRK13796 GTPase YqeH; Provisio 98.4 2.5E-06 5.5E-11 64.5 8.8 92 70-169 58-157 (365)
385 TIGR01425 SRP54_euk signal rec 98.4 5E-06 1.1E-10 63.7 10.4 141 9-161 100-280 (429)
386 PRK09563 rbgA GTPase YlqF; Rev 98.4 1.3E-06 2.7E-11 64.1 6.7 99 65-171 7-106 (287)
387 TIGR03597 GTPase_YqeH ribosome 98.4 1.1E-06 2.4E-11 66.4 6.4 57 10-69 155-215 (360)
388 PRK13796 GTPase YqeH; Provisio 98.4 9E-07 1.9E-11 66.9 5.6 56 10-68 161-220 (365)
389 KOG1424 Predicted GTP-binding 98.3 6.2E-07 1.3E-11 68.8 4.5 55 9-68 314-369 (562)
390 COG3523 IcmF Type VI protein s 98.3 1.9E-06 4.1E-11 72.8 7.7 111 13-128 129-270 (1188)
391 COG1162 Predicted GTPases [Gen 98.3 1.1E-06 2.5E-11 63.7 5.5 58 11-72 166-230 (301)
392 TIGR00157 ribosome small subun 98.3 1.4E-06 3.1E-11 62.3 5.9 24 10-33 121-144 (245)
393 PRK14722 flhF flagellar biosyn 98.3 7E-06 1.5E-10 61.9 9.2 140 9-152 137-315 (374)
394 PF11111 CENP-M: Centromere pr 98.3 0.00013 2.9E-09 48.8 13.9 145 3-172 9-154 (176)
395 COG1162 Predicted GTPases [Gen 98.3 1.2E-05 2.6E-10 58.5 9.7 96 71-169 69-165 (301)
396 KOG0459 Polypeptide release fa 98.3 2.7E-06 5.9E-11 63.6 6.1 157 7-163 77-278 (501)
397 KOG1487 GTP-binding protein DR 98.2 1.1E-05 2.3E-10 57.3 8.3 82 10-94 60-149 (358)
398 cd01854 YjeQ_engC YjeQ/EngC. 98.2 3.4E-06 7.4E-11 61.8 6.0 59 10-71 162-226 (287)
399 PRK00098 GTPase RsgA; Reviewed 98.2 4.8E-06 1E-10 61.4 6.2 25 10-34 165-189 (298)
400 PRK11537 putative GTP-binding 98.2 3.7E-05 7.9E-10 57.2 10.8 95 58-163 91-196 (318)
401 cd03115 SRP The signal recogni 98.2 1.1E-05 2.3E-10 54.8 7.4 84 57-150 82-171 (173)
402 COG0523 Putative GTPases (G3E 98.2 2.7E-05 5.9E-10 57.8 9.5 144 12-163 4-193 (323)
403 PF00448 SRP54: SRP54-type pro 98.1 1.7E-05 3.7E-10 54.9 7.5 138 10-159 2-179 (196)
404 PF02492 cobW: CobW/HypB/UreG, 98.1 7.1E-06 1.5E-10 55.9 5.2 82 58-145 85-171 (178)
405 PRK13695 putative NTPase; Prov 98.1 0.00021 4.5E-09 48.5 12.4 49 112-170 124-172 (174)
406 PRK14721 flhF flagellar biosyn 98.1 1.5E-05 3.3E-10 61.0 7.3 138 9-159 191-365 (420)
407 KOG0469 Elongation factor 2 [T 98.1 9E-06 2E-10 62.7 6.0 117 6-126 16-162 (842)
408 PRK12727 flagellar biosynthesi 98.0 7.7E-05 1.7E-09 58.6 10.2 139 9-159 350-523 (559)
409 KOG2484 GTPase [General functi 98.0 6E-06 1.3E-10 61.7 3.4 57 7-67 250-306 (435)
410 cd03114 ArgK-like The function 98.0 3.2E-05 6.8E-10 51.1 6.5 58 57-125 91-148 (148)
411 PRK10867 signal recognition pa 98.0 3.4E-05 7.4E-10 59.5 7.4 87 57-153 183-275 (433)
412 PF06858 NOG1: Nucleolar GTP-b 98.0 4.5E-05 9.8E-10 41.3 5.6 44 81-125 13-58 (58)
413 PRK14723 flhF flagellar biosyn 98.0 9.5E-05 2.1E-09 60.5 10.0 140 10-159 186-362 (767)
414 PRK12723 flagellar biosynthesi 98.0 0.00014 3.1E-09 55.3 10.3 140 8-159 173-351 (388)
415 COG1419 FlhF Flagellar GTP-bin 98.0 4.4E-05 9.6E-10 57.7 7.4 133 9-151 203-371 (407)
416 PRK06995 flhF flagellar biosyn 97.9 8.9E-05 1.9E-09 57.9 8.8 138 10-159 257-430 (484)
417 cd02038 FleN-like FleN is a me 97.9 4.2E-05 9.1E-10 50.0 6.0 105 14-126 5-109 (139)
418 TIGR00959 ffh signal recogniti 97.9 0.00014 3.1E-09 56.1 9.7 87 57-153 182-274 (428)
419 PRK00771 signal recognition pa 97.9 6.1E-05 1.3E-09 58.2 7.6 135 8-152 94-266 (437)
420 PRK05703 flhF flagellar biosyn 97.9 0.00014 3E-09 56.3 9.4 90 58-159 300-396 (424)
421 PRK12724 flagellar biosynthesi 97.8 0.00017 3.8E-09 55.2 8.6 134 9-152 223-393 (432)
422 PRK12726 flagellar biosynthesi 97.8 8.7E-05 1.9E-09 56.1 6.9 134 9-152 206-376 (407)
423 PF13207 AAA_17: AAA domain; P 97.8 1.9E-05 4E-10 50.2 2.9 22 11-32 1-22 (121)
424 KOG1534 Putative transcription 97.8 0.0002 4.3E-09 49.5 7.4 23 9-31 3-25 (273)
425 cd02042 ParA ParA and ParB of 97.8 0.00019 4E-09 44.3 6.8 82 12-105 2-84 (104)
426 PF13555 AAA_29: P-loop contai 97.8 3.4E-05 7.5E-10 42.8 3.0 21 11-31 25-45 (62)
427 PRK08118 topology modulation p 97.7 2.7E-05 5.9E-10 52.5 3.0 22 11-32 3-24 (167)
428 KOG0780 Signal recognition par 97.7 8.6E-05 1.9E-09 55.7 5.6 100 7-106 99-238 (483)
429 KOG2485 Conserved ATP/GTP bind 97.7 8.1E-05 1.8E-09 54.2 5.3 57 8-67 142-205 (335)
430 PF13671 AAA_33: AAA domain; P 97.7 3.1E-05 6.8E-10 50.6 2.8 20 12-31 2-21 (143)
431 PRK07261 topology modulation p 97.7 3.5E-05 7.7E-10 52.2 3.0 22 11-32 2-23 (171)
432 COG0563 Adk Adenylate kinase a 97.7 3.8E-05 8.1E-10 52.3 3.0 22 11-32 2-23 (178)
433 TIGR00150 HI0065_YjeE ATPase, 97.7 0.00017 3.6E-09 46.6 5.8 24 10-33 23-46 (133)
434 cd00009 AAA The AAA+ (ATPases 97.7 0.00037 8E-09 45.1 7.6 25 9-33 19-43 (151)
435 TIGR02475 CobW cobalamin biosy 97.7 0.00077 1.7E-08 50.7 10.0 21 12-32 7-27 (341)
436 cd01983 Fer4_NifH The Fer4_Nif 97.6 0.0006 1.3E-08 41.0 7.9 77 12-103 2-79 (99)
437 cd03222 ABC_RNaseL_inhibitor T 97.6 0.00062 1.3E-08 46.4 8.2 88 10-108 26-118 (177)
438 PRK06731 flhF flagellar biosyn 97.6 0.00039 8.4E-09 50.5 7.5 133 10-152 76-245 (270)
439 cd03111 CpaE_like This protein 97.6 0.00045 9.8E-09 42.9 6.8 103 12-123 2-106 (106)
440 COG1136 SalX ABC-type antimicr 97.6 5.8E-05 1.3E-09 53.0 3.0 22 11-32 33-54 (226)
441 cd02019 NK Nucleoside/nucleoti 97.6 7.4E-05 1.6E-09 42.7 2.9 21 12-32 2-22 (69)
442 PRK10751 molybdopterin-guanine 97.6 8.3E-05 1.8E-09 50.3 3.6 28 5-32 2-29 (173)
443 TIGR00235 udk uridine kinase. 97.6 9.2E-05 2E-09 51.7 3.8 27 5-31 2-28 (207)
444 COG1126 GlnQ ABC-type polar am 97.6 7.2E-05 1.6E-09 51.9 3.1 23 10-32 29-51 (240)
445 PF13521 AAA_28: AAA domain; P 97.5 6.2E-05 1.3E-09 50.5 2.4 22 11-32 1-22 (163)
446 PF03215 Rad17: Rad17 cell cyc 97.5 0.0013 2.7E-08 52.2 9.9 84 83-169 133-228 (519)
447 PF02367 UPF0079: Uncharacteri 97.5 0.00019 4.2E-09 45.7 4.4 61 10-70 16-76 (123)
448 PRK10646 ADP-binding protein; 97.5 0.00068 1.5E-08 44.8 6.9 58 11-68 30-87 (153)
449 cd00071 GMPK Guanosine monopho 97.5 0.00011 2.3E-09 48.0 3.0 21 12-32 2-22 (137)
450 KOG1970 Checkpoint RAD17-RFC c 97.5 0.00091 2E-08 52.5 8.4 90 83-172 195-285 (634)
451 smart00382 AAA ATPases associa 97.5 0.00012 2.7E-09 47.0 3.2 26 10-35 3-28 (148)
452 PRK14530 adenylate kinase; Pro 97.5 0.00012 2.6E-09 51.5 3.3 22 10-31 4-25 (215)
453 COG0802 Predicted ATPase or ki 97.5 0.00049 1.1E-08 45.0 5.7 60 10-69 26-85 (149)
454 PTZ00088 adenylate kinase 1; P 97.5 0.00015 3.2E-09 51.5 3.6 26 7-32 4-29 (229)
455 KOG2423 Nucleolar GTPase [Gene 97.4 5.2E-05 1.1E-09 57.0 1.2 59 5-67 303-361 (572)
456 PF00005 ABC_tran: ABC transpo 97.4 0.00013 2.9E-09 47.2 2.9 24 10-33 12-35 (137)
457 PF13238 AAA_18: AAA domain; P 97.4 0.00012 2.7E-09 46.7 2.7 21 12-32 1-21 (129)
458 PRK10078 ribose 1,5-bisphospho 97.4 0.00015 3.3E-09 49.7 3.2 22 11-32 4-25 (186)
459 PRK08233 hypothetical protein; 97.4 0.00018 4E-09 48.9 3.6 24 9-32 3-26 (182)
460 PRK06217 hypothetical protein; 97.4 0.00015 3.2E-09 49.6 3.1 23 10-32 2-24 (183)
461 cd01131 PilT Pilus retraction 97.4 0.00071 1.5E-08 47.0 6.5 22 12-33 4-25 (198)
462 COG1116 TauB ABC-type nitrate/ 97.4 0.00015 3.2E-09 51.4 3.1 21 12-32 32-52 (248)
463 TIGR02322 phosphon_PhnN phosph 97.4 0.00014 3.1E-09 49.5 3.0 22 11-32 3-24 (179)
464 PRK05480 uridine/cytidine kina 97.4 0.00021 4.5E-09 50.0 3.8 26 7-32 4-29 (209)
465 PRK03839 putative kinase; Prov 97.4 0.00016 3.5E-09 49.3 3.0 22 11-32 2-23 (180)
466 TIGR03263 guanyl_kin guanylate 97.4 0.00017 3.7E-09 49.1 3.1 22 11-32 3-24 (180)
467 PF00004 AAA: ATPase family as 97.4 0.00018 3.9E-09 46.1 3.0 21 12-32 1-21 (132)
468 TIGR01360 aden_kin_iso1 adenyl 97.4 0.00018 3.8E-09 49.3 3.0 22 10-31 4-25 (188)
469 PF04665 Pox_A32: Poxvirus A32 97.3 0.00022 4.7E-09 50.7 3.4 26 7-32 11-36 (241)
470 PRK14737 gmk guanylate kinase; 97.3 0.00021 4.4E-09 49.1 3.1 24 10-33 5-28 (186)
471 PRK14531 adenylate kinase; Pro 97.3 0.00022 4.8E-09 48.8 3.2 23 10-32 3-25 (183)
472 PRK13949 shikimate kinase; Pro 97.3 0.00021 4.5E-09 48.3 3.0 21 11-31 3-23 (169)
473 cd02023 UMPK Uridine monophosp 97.3 0.00019 4.1E-09 49.7 2.9 21 12-32 2-22 (198)
474 cd00820 PEPCK_HprK Phosphoenol 97.3 0.00022 4.8E-09 44.2 2.8 21 10-30 16-36 (107)
475 PRK14738 gmk guanylate kinase; 97.3 0.00039 8.5E-09 48.5 4.4 25 8-32 12-36 (206)
476 COG0541 Ffh Signal recognition 97.3 0.00041 8.9E-09 52.9 4.8 114 7-126 98-251 (451)
477 cd01130 VirB11-like_ATPase Typ 97.3 0.00023 4.9E-09 48.9 3.2 25 9-33 25-49 (186)
478 PLN02200 adenylate kinase fami 97.3 0.00035 7.5E-09 49.8 4.0 24 8-31 42-65 (234)
479 COG0194 Gmk Guanylate kinase [ 97.3 0.00019 4.1E-09 48.6 2.5 24 10-33 5-28 (191)
480 COG0552 FtsY Signal recognitio 97.3 0.001 2.2E-08 49.2 6.3 143 7-162 137-326 (340)
481 PF03205 MobB: Molybdopterin g 97.3 0.00023 5.1E-09 46.5 2.8 22 11-32 2-23 (140)
482 PRK14532 adenylate kinase; Pro 97.3 0.00025 5.4E-09 48.7 3.1 22 11-32 2-23 (188)
483 cd01428 ADK Adenylate kinase ( 97.3 0.00023 5.1E-09 48.9 2.9 22 11-32 1-22 (194)
484 PRK05541 adenylylsulfate kinas 97.3 0.00036 7.9E-09 47.4 3.7 25 8-32 6-30 (176)
485 cd03110 Fer4_NifH_child This p 97.3 0.0031 6.6E-08 42.9 8.3 86 56-150 91-176 (179)
486 PRK01889 GTPase RsgA; Reviewed 97.3 0.00038 8.3E-09 52.7 4.1 24 10-33 196-219 (356)
487 PRK00300 gmk guanylate kinase; 97.3 0.00026 5.6E-09 49.3 3.0 23 10-32 6-28 (205)
488 TIGR01359 UMP_CMP_kin_fam UMP- 97.3 0.00025 5.5E-09 48.4 2.9 21 12-32 2-22 (183)
489 PRK13851 type IV secretion sys 97.2 0.0019 4.1E-08 48.6 7.6 25 9-33 162-186 (344)
490 COG3840 ThiQ ABC-type thiamine 97.2 0.0003 6.5E-09 47.7 3.0 23 10-32 26-48 (231)
491 cd02025 PanK Pantothenate kina 97.2 0.00026 5.7E-09 49.9 2.8 21 12-32 2-22 (220)
492 COG3839 MalK ABC-type sugar tr 97.2 0.00029 6.3E-09 52.5 3.1 22 12-33 32-53 (338)
493 PF07728 AAA_5: AAA domain (dy 97.2 0.00029 6.3E-09 45.9 2.7 22 11-32 1-22 (139)
494 TIGR01351 adk adenylate kinase 97.2 0.00031 6.7E-09 49.2 3.0 21 11-31 1-21 (210)
495 PF05621 TniB: Bacterial TniB 97.2 0.0021 4.4E-08 47.2 7.2 107 4-124 56-190 (302)
496 cd03238 ABC_UvrA The excision 97.2 0.00038 8.3E-09 47.4 3.2 22 9-30 21-42 (176)
497 PRK02496 adk adenylate kinase; 97.2 0.0004 8.7E-09 47.5 3.2 23 10-32 2-24 (184)
498 PRK14527 adenylate kinase; Pro 97.2 0.00053 1.1E-08 47.3 3.7 24 8-31 5-28 (191)
499 PRK13900 type IV secretion sys 97.2 0.0017 3.6E-08 48.7 6.6 26 8-33 159-184 (332)
500 COG1120 FepC ABC-type cobalami 97.2 0.00038 8.3E-09 49.9 3.0 22 11-32 30-51 (258)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-44 Score=238.46 Aligned_cols=168 Identities=42% Similarity=0.681 Sum_probs=162.3
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
..-+||+++|+.|+|||+|+.|+....+.+.+..|.++++....+..++..+++++|||+|+++|+.+..+|++++|++|
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii 86 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 86 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCe-EEEeccCCCCCHHHHHHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM-FIETSAKAGFNIKLCCHT 165 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~v~~~f~~ 165 (175)
+|||+++.+||..+..|+.++.++...++|.++|+||+|+.+.+.+..++++.|+.+++++ ++++||+++.++++.|..
T Consensus 87 ~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~ 166 (205)
T KOG0084|consen 87 FVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLT 166 (205)
T ss_pred EEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998 999999999999999999
Q ss_pred HHHHHhhhh
Q 030524 166 LNSLITVCI 174 (175)
Q Consensus 166 l~~~~~~~~ 174 (175)
|...+....
T Consensus 167 la~~lk~~~ 175 (205)
T KOG0084|consen 167 LAKELKQRK 175 (205)
T ss_pred HHHHHHHhc
Confidence 988876653
No 2
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.4e-42 Score=230.81 Aligned_cols=168 Identities=45% Similarity=0.724 Sum_probs=162.9
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (175)
...-+||+++|++|||||+++.++..+.+...+..|.++++....+.+++..+.+++|||+|+++|+.+...|++.++++
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi 88 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGI 88 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCee
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHH
Q 030524 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHT 165 (175)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~ 165 (175)
++|||+++..+|+++..|+..+..+...++|.++|+||+|+...+++..+.++++|.++|++|+++||++|.||++.|..
T Consensus 89 ~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~ 168 (207)
T KOG0078|consen 89 LLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLS 168 (207)
T ss_pred EEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhh
Q 030524 166 LNSLITVC 173 (175)
Q Consensus 166 l~~~~~~~ 173 (175)
|.+.+..+
T Consensus 169 La~~i~~k 176 (207)
T KOG0078|consen 169 LARDILQK 176 (207)
T ss_pred HHHHHHhh
Confidence 99998754
No 3
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-41 Score=221.90 Aligned_cols=167 Identities=40% Similarity=0.765 Sum_probs=160.5
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
...+|++++|..++|||||+-|+..+.+.+...+|++.-+..+.+.+++..+++.||||+|+++|.++.+.|+++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l 166 (175)
+|||+++.+||..++.|++++....++++-+.++|||+|+.+.+++..+++..+|...+..++++||++|.|++++|..|
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I 162 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI 162 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence 99999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhh
Q 030524 167 NSLITVC 173 (175)
Q Consensus 167 ~~~~~~~ 173 (175)
.+.+...
T Consensus 163 a~~lp~~ 169 (200)
T KOG0092|consen 163 AEKLPCS 169 (200)
T ss_pred HHhccCc
Confidence 9987543
No 4
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6e-41 Score=221.33 Aligned_cols=166 Identities=80% Similarity=1.161 Sum_probs=158.7
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
.+.+|++++|+.++||||||+|++.+.+..+|.+|+++++......+.+..+.+++|||+|+++|+.+...|++++.++|
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav 99 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 99 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcCC-CCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERGS-DVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHT 165 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~ 165 (175)
+|||++|..+|+...+|++.+..+.+. ++.+++|+||.||.+.+++...+.+..|+++++.|+++|++.|.||+++|..
T Consensus 100 iVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrr 179 (221)
T KOG0094|consen 100 IVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRR 179 (221)
T ss_pred EEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHH
Confidence 999999999999999999999999885 5889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 030524 166 LNSLITV 172 (175)
Q Consensus 166 l~~~~~~ 172 (175)
+...+..
T Consensus 180 Iaa~l~~ 186 (221)
T KOG0094|consen 180 IAAALPG 186 (221)
T ss_pred HHHhccC
Confidence 7766543
No 5
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=5.7e-41 Score=214.86 Aligned_cols=166 Identities=40% Similarity=0.693 Sum_probs=159.4
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
...+||+++|.+|+|||||+.++..+.+.+....+.++++..+...+++..+++.+|||+|+++|+.+...|++.+.++|
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI 88 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII 88 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHT 165 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~ 165 (175)
+|||++.+++|..+..|++++..++. +++..++|+||.|...++.++..+...||+++++-|+++||++.++|..+|+.
T Consensus 89 lVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~Fee 168 (209)
T KOG0080|consen 89 LVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEE 168 (209)
T ss_pred EEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHH
Confidence 99999999999999999999999986 77888899999998888999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 030524 166 LNSLITV 172 (175)
Q Consensus 166 l~~~~~~ 172 (175)
++++|++
T Consensus 169 lveKIi~ 175 (209)
T KOG0080|consen 169 LVEKIIE 175 (209)
T ss_pred HHHHHhc
Confidence 9999875
No 6
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.7e-41 Score=219.20 Aligned_cols=168 Identities=37% Similarity=0.661 Sum_probs=161.4
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (175)
....+|.+++|+.|||||+|+.+++.+.+.+.+..|.++++....+.++++.+++++|||+|++.|++..+.|++.+-++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHH
Q 030524 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHT 165 (175)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~ 165 (175)
|+|||++++++|..+..|+..+..+...+..+++++||+|+...+++..++.+.||+++++.++++||+++++++|.|..
T Consensus 83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~n 162 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFIN 162 (216)
T ss_pred EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHH
Confidence 99999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhh
Q 030524 166 LNSLITVC 173 (175)
Q Consensus 166 l~~~~~~~ 173 (175)
....|..+
T Consensus 163 ta~~Iy~~ 170 (216)
T KOG0098|consen 163 TAKEIYRK 170 (216)
T ss_pred HHHHHHHH
Confidence 88877654
No 7
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=1.6e-39 Score=224.91 Aligned_cols=164 Identities=35% Similarity=0.622 Sum_probs=151.9
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (175)
+.|+++|+.|||||||+++++.+.+..++.++.+.++....+.+++..+.+.+||++|+++|..++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 46899999999999999999999998888999998988888889999999999999999999999999999999999999
Q ss_pred ECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhc-CCeEEEeccCCCCCHHHHHHHHHH
Q 030524 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKLCCHTLNS 168 (175)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~v~~~f~~l~~ 168 (175)
|++++++|+.+..|+..+......+.|+++|+||+|+.+.+++...++++++++. ++.++++||++|.|++++|.++.+
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999999887776678999999999999888888888999999885 789999999999999999999998
Q ss_pred HHhhh
Q 030524 169 LITVC 173 (175)
Q Consensus 169 ~~~~~ 173 (175)
.+...
T Consensus 161 ~~~~~ 165 (202)
T cd04120 161 DILKK 165 (202)
T ss_pred HHHHh
Confidence 87654
No 8
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=9.1e-40 Score=213.75 Aligned_cols=173 Identities=36% Similarity=0.600 Sum_probs=161.0
Q ss_pred CCCCCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 030524 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 80 (175)
Q Consensus 1 ~~~~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 80 (175)
|++..+...+||+++|++|+|||||++++..+++...+..+++.++..+++.+++..+++++|||+|+++|+++-..+++
T Consensus 1 M~~~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYR 80 (210)
T KOG0394|consen 1 MSSLRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYR 80 (210)
T ss_pred CCCcCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceec
Confidence 56666777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEECCChhhHHhHHHHHHHHHHhcC----CCCcEEEEEeCCCCCC--CCCCCHHHHHHHHHhcC-CeEEEecc
Q 030524 81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVE--KRQVSIEEGEAKSRELN-VMFIETSA 153 (175)
Q Consensus 81 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~nk~D~~~--~~~~~~~~~~~~~~~~~-~~~~~~s~ 153 (175)
.+|+++++||++++.+|+.+..|..++..+.. ..-|+++++||.|+.. .++++...+..+++..| +||+++||
T Consensus 81 gaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSA 160 (210)
T KOG0394|consen 81 GADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSA 160 (210)
T ss_pred CCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecc
Confidence 99999999999999999999999999999876 4578999999999865 38899999999999886 79999999
Q ss_pred CCCCCHHHHHHHHHHHHhhh
Q 030524 154 KAGFNIKLCCHTLNSLITVC 173 (175)
Q Consensus 154 ~~~~~v~~~f~~l~~~~~~~ 173 (175)
+...||.+.|..+...+..+
T Consensus 161 K~~~NV~~AFe~ia~~aL~~ 180 (210)
T KOG0394|consen 161 KEATNVDEAFEEIARRALAN 180 (210)
T ss_pred cccccHHHHHHHHHHHHHhc
Confidence 99999999999998877654
No 9
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=8.5e-39 Score=219.37 Aligned_cols=164 Identities=34% Similarity=0.595 Sum_probs=152.2
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (175)
..+||+++|..|+|||||+.++..+.+..++.++.+.++....+.+++..+.+.+||++|+++|..++..+++++|++|+
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill 84 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL 84 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence 45999999999999999999999988887888888888888888889999999999999999999999999999999999
Q ss_pred EEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLN 167 (175)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~ 167 (175)
|||++++++|+.+..|+.++.... ++.|+++|+||.|+.+.+++..++++.+++.+++++++|||++|.|++++|.++.
T Consensus 85 VfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~ 163 (189)
T cd04121 85 VYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELA 163 (189)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999999997765 6899999999999988888889999999999999999999999999999999999
Q ss_pred HHHhh
Q 030524 168 SLITV 172 (175)
Q Consensus 168 ~~~~~ 172 (175)
+.+..
T Consensus 164 ~~i~~ 168 (189)
T cd04121 164 RIVLM 168 (189)
T ss_pred HHHHH
Confidence 87754
No 10
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=7.2e-38 Score=211.46 Aligned_cols=164 Identities=34% Similarity=0.629 Sum_probs=151.2
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (175)
.+||+++|++|+|||||++++..+.+...+.++.+.++....+..++..+.+.+||+||++++...+..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 37999999999999999999999988888888888888777788888889999999999999999999999999999999
Q ss_pred EECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHH
Q 030524 89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNS 168 (175)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~ 168 (175)
||++++++|+.+..|+..+.....++.|+++++||+|+.+.+.....++..+++..+++++++||++|.|+.++|..+.+
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999987776678999999999999888888888999999999999999999999999999999998
Q ss_pred HHhh
Q 030524 169 LITV 172 (175)
Q Consensus 169 ~~~~ 172 (175)
.+..
T Consensus 162 ~~~~ 165 (166)
T cd04122 162 KIYQ 165 (166)
T ss_pred HHhh
Confidence 7754
No 11
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-38 Score=211.49 Aligned_cols=166 Identities=37% Similarity=0.692 Sum_probs=160.8
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (175)
.-+||+++|++++|||-|+.|+..+.+..+..+|.++++....+.++++.++.+||||+|+++|+.....|++.+.++++
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAll 92 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 92 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEE
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLN 167 (175)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~ 167 (175)
|||++.+.+|+.+.+|+.+++.+..+++++++|+||+||.+.+.+..++++.++...+..|+++||..+.+|+++|..++
T Consensus 93 VYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l 172 (222)
T KOG0087|consen 93 VYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERVL 172 (222)
T ss_pred EEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHhhh
Q 030524 168 SLITVC 173 (175)
Q Consensus 168 ~~~~~~ 173 (175)
..|...
T Consensus 173 ~~I~~~ 178 (222)
T KOG0087|consen 173 TEIYKI 178 (222)
T ss_pred HHHHHH
Confidence 887654
No 12
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=1.4e-37 Score=212.37 Aligned_cols=163 Identities=25% Similarity=0.474 Sum_probs=146.5
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
...+||+++|++|+|||||+++++.+.+..++.++.+..+ ...+.+++..+.+.+|||+|+++|..++..+++++|++|
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 4568999999999999999999999998888888887544 466778999999999999999999999999999999999
Q ss_pred EEEECCChhhHHhH-HHHHHHHHHhcCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHhcCC-eEEEec
Q 030524 87 VVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELNV-MFIETS 152 (175)
Q Consensus 87 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nk~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s 152 (175)
+|||++++++|+.+ ..|+..+.... ++.|+++|+||+|+.+ .+.+..++++++++++++ +|++||
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S 160 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 160 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence 99999999999997 78999988765 5799999999999854 346889999999999996 999999
Q ss_pred cCCCCC-HHHHHHHHHHHHh
Q 030524 153 AKAGFN-IKLCCHTLNSLIT 171 (175)
Q Consensus 153 ~~~~~~-v~~~f~~l~~~~~ 171 (175)
|++|+| ++++|..+.+.+.
T Consensus 161 Ak~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 161 ALQSENSVRDIFHVATLACV 180 (182)
T ss_pred cCCCCCCHHHHHHHHHHHHh
Confidence 999998 9999999888654
No 13
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=1.7e-37 Score=210.68 Aligned_cols=165 Identities=33% Similarity=0.482 Sum_probs=148.2
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (175)
.+||+++|.+|+|||||++++..+.+...+.++.+. .+...+.+++..+.+.+||++|++++..++..++.++|++|+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIED-AYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccc-eEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 579999999999999999999999888788888863 3455677888889999999999999999999999999999999
Q ss_pred EECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524 89 YDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLN 167 (175)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~ 167 (175)
||++++.+|+.+..|+..+..... .++|+++|+||+|+.+.+++...++..+++++++++++|||++|.|++++|.++.
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 999999999999998887776543 6799999999999987778888899999999999999999999999999999999
Q ss_pred HHHhhhh
Q 030524 168 SLITVCI 174 (175)
Q Consensus 168 ~~~~~~~ 174 (175)
+.+..+.
T Consensus 161 ~~~~~~~ 167 (172)
T cd04141 161 REIRRKE 167 (172)
T ss_pred HHHHHhc
Confidence 8887654
No 14
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=2.8e-37 Score=207.59 Aligned_cols=160 Identities=38% Similarity=0.654 Sum_probs=148.8
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (175)
++|+++|++|+|||||+++++.+.+.+.+.++.+.++....+.+++..+.+.+||++|++++...+..++.++|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 48999999999999999999999888888899888888888888888899999999999999999999999999999999
Q ss_pred ECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHH
Q 030524 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSL 169 (175)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~ 169 (175)
|++++++|+.+..|+..+......+.|+++++||.|+.+.+.+..+++..+++.++++++++||++|.|++++|.+|.+.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 99999999999999999987765689999999999998888888899999999999999999999999999999999865
No 15
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=3e-37 Score=209.57 Aligned_cols=160 Identities=34% Similarity=0.568 Sum_probs=144.1
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (175)
+||+++|++|+|||||+.+++.+.+..++.++.+..+ ...+..++..+.+.+|||+|+++|..++..+++++|++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 6899999999999999999999999888999987554 556778888999999999999999999999999999999999
Q ss_pred ECCChhhHHhH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCC----------CCCHHHHHHHHHhcCC-eEEEeccCCCC
Q 030524 90 DVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEKR----------QVSIEEGEAKSRELNV-MFIETSAKAGF 157 (175)
Q Consensus 90 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~s~~~~~ 157 (175)
|++++++|+.+ ..|+..+.... ++.|+++|+||+|+.+.+ .+...++..+++.+++ +|++|||++|.
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 99999999998 68999987665 579999999999996543 4788899999999998 69999999999
Q ss_pred CHHHHHHHHHHHHh
Q 030524 158 NIKLCCHTLNSLIT 171 (175)
Q Consensus 158 ~v~~~f~~l~~~~~ 171 (175)
|++++|..+.+.+.
T Consensus 160 nV~~~F~~~~~~~~ 173 (176)
T cd04133 160 NVKAVFDAAIKVVL 173 (176)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998653
No 16
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-38 Score=199.57 Aligned_cols=166 Identities=37% Similarity=0.672 Sum_probs=159.6
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (175)
..+|+.++|+..+||||++.++++..+.+.+.++.++++..+++....+.+++++|||+|+++|+.+...++++++++|+
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL 99 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence 35799999999999999999999999999999999999999988888889999999999999999999999999999999
Q ss_pred EEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLN 167 (175)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~ 167 (175)
+||++|.++|..++.|.-.+..++..+.|+|+++||||+..++.+..+..+.++.++|..|+++|++.+.|++.+|..++
T Consensus 100 myDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv 179 (193)
T KOG0093|consen 100 MYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLV 179 (193)
T ss_pred EEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhh
Q 030524 168 SLITVC 173 (175)
Q Consensus 168 ~~~~~~ 173 (175)
..|+.+
T Consensus 180 ~~Ic~k 185 (193)
T KOG0093|consen 180 DIICDK 185 (193)
T ss_pred HHHHHH
Confidence 988765
No 17
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.7e-38 Score=200.95 Aligned_cols=163 Identities=40% Similarity=0.696 Sum_probs=156.2
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (175)
++.+++|++|+|||+|+.++..+.+...|.-+.++++...++.++|..+++.|||++|+++|+.+...|++..+++++||
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVY 88 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 88 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEE
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHH
Q 030524 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSL 169 (175)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~ 169 (175)
|++|.+||.++++|++++..+++ .+|-++|+||.|..+.+.+...+++.+|...|+.+|++|++.+++++..|..|.+.
T Consensus 89 DVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~q 167 (198)
T KOG0079|consen 89 DVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCITKQ 167 (198)
T ss_pred ECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHHH
Confidence 99999999999999999999885 89999999999999999999999999999999999999999999999999998877
Q ss_pred Hhhh
Q 030524 170 ITVC 173 (175)
Q Consensus 170 ~~~~ 173 (175)
....
T Consensus 168 vl~~ 171 (198)
T KOG0079|consen 168 VLQA 171 (198)
T ss_pred HHHH
Confidence 6543
No 18
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=5.1e-37 Score=207.12 Aligned_cols=163 Identities=37% Similarity=0.684 Sum_probs=149.2
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (175)
+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++++...+..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999988888888887777777777888889999999999999999999999999999999
Q ss_pred ECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHH
Q 030524 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSL 169 (175)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~ 169 (175)
|++++++++.+..|+..+......+.|+++++||+|+.+.+.....+..+++..++++++++||++|.|+.++|+++.+.
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI 161 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999887766689999999999998777777888888999999999999999999999999999987
Q ss_pred Hhh
Q 030524 170 ITV 172 (175)
Q Consensus 170 ~~~ 172 (175)
+..
T Consensus 162 ~~~ 164 (165)
T cd01865 162 ICD 164 (165)
T ss_pred HHh
Confidence 654
No 19
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=4.9e-37 Score=207.57 Aligned_cols=164 Identities=43% Similarity=0.728 Sum_probs=151.5
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (175)
.+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++.+...+..+++++|++++|
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v 82 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILV 82 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEE
Confidence 58999999999999999999999998888899998888777888888889999999999999999999999999999999
Q ss_pred EECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHH
Q 030524 89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNS 168 (175)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~ 168 (175)
||++++++|+.+..|+..+......+.|+++++||+|+.+.+....+++..++..++++++++||++|.|++++|.++.+
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 162 (167)
T cd01867 83 YDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAK 162 (167)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999998876678999999999999877777888888999999999999999999999999999998
Q ss_pred HHhh
Q 030524 169 LITV 172 (175)
Q Consensus 169 ~~~~ 172 (175)
.+..
T Consensus 163 ~~~~ 166 (167)
T cd01867 163 DIKK 166 (167)
T ss_pred HHHh
Confidence 8754
No 20
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.1e-38 Score=199.94 Aligned_cols=166 Identities=37% Similarity=0.645 Sum_probs=160.5
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (175)
-+|++++|+.|+|||+|++++..+.+..+...+.++++....+.+.++.+++++|||+|+++|++..+.|++.+-+.++|
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLV 88 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 88 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEE
Confidence 48999999999999999999999999999899999999999999999999999999999999999999999999999999
Q ss_pred EECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHH
Q 030524 89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNS 168 (175)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~ 168 (175)
||++++++|..+..|+...+....+++-+++++||.|+.+++++...++..|+.+..+.++++|+++|+|++|.|-...+
T Consensus 89 YD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~~ 168 (214)
T KOG0086|consen 89 YDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCAR 168 (214)
T ss_pred EeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHHH
Confidence 99999999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhh
Q 030524 169 LITVCI 174 (175)
Q Consensus 169 ~~~~~~ 174 (175)
.|..++
T Consensus 169 tIl~kI 174 (214)
T KOG0086|consen 169 TILNKI 174 (214)
T ss_pred HHHHHH
Confidence 888765
No 21
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=7.8e-37 Score=208.23 Aligned_cols=161 Identities=26% Similarity=0.491 Sum_probs=143.7
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (175)
++||+++|++|+|||||+++++.+.+..++.++.+..+ ...+.+++..+.+.+|||+|++.|..+...+++++|++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 47999999999999999999999998888888887554 46677889999999999999999999999999999999999
Q ss_pred EECCChhhHHhH-HHHHHHHHHhcCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHhcCC-eEEEeccC
Q 030524 89 YDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELNV-MFIETSAK 154 (175)
Q Consensus 89 ~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nk~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s~~ 154 (175)
||++++++|+.+ ..|+..+.... ++.|+++|+||+|+.+ .+.+...+++++++++++ +|++|||+
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 999999999995 78999888765 5899999999999854 245788999999999997 89999999
Q ss_pred CCCC-HHHHHHHHHHHHh
Q 030524 155 AGFN-IKLCCHTLNSLIT 171 (175)
Q Consensus 155 ~~~~-v~~~f~~l~~~~~ 171 (175)
+|++ ++++|..+.+.+.
T Consensus 159 ~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 159 TSEKSVRDIFHVATMACL 176 (178)
T ss_pred cCCcCHHHHHHHHHHHHh
Confidence 9995 9999999888543
No 22
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=1e-36 Score=210.05 Aligned_cols=163 Identities=30% Similarity=0.458 Sum_probs=143.4
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (175)
..+||+++|+.|+|||||+.+++.+.+...+.++.+.. +...+.+++..+.+.+|||+|+++|..++..++.++|++|+
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il 80 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDN-YSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII 80 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEee-eEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence 45899999999999999999999999888888888754 44556788889999999999999999999999999999999
Q ss_pred EEECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHhcC-CeEEEecc
Q 030524 88 VYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELN-VMFIETSA 153 (175)
Q Consensus 88 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~s~ 153 (175)
|||++++++|+.+. .|+..+.... +++|+++|+||.|+.+. +.+...+++.++++++ ++++++||
T Consensus 81 vydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 159 (191)
T cd01875 81 CFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA 159 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence 99999999999997 5887776554 57999999999999644 2356778899999998 59999999
Q ss_pred CCCCCHHHHHHHHHHHHhh
Q 030524 154 KAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 154 ~~~~~v~~~f~~l~~~~~~ 172 (175)
++|+|++++|.++.+.+..
T Consensus 160 k~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 160 LNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999987754
No 23
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.1e-36 Score=214.01 Aligned_cols=167 Identities=26% Similarity=0.438 Sum_probs=148.7
Q ss_pred CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 030524 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (175)
Q Consensus 5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (175)
+....+||+++|++|||||||+.+++.+.+..++.++.+.++ ...+.+++..+.+.+|||+|++.|..++..++.++|+
T Consensus 9 ~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~ 87 (232)
T cd04174 9 PLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 87 (232)
T ss_pred CceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcE
Confidence 445679999999999999999999999999888999987555 4567788999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHh-HHHHHHHHHHhcCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHhcCC-eEEE
Q 030524 85 AVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELNV-MFIE 150 (175)
Q Consensus 85 ~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nk~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~ 150 (175)
+|+|||++++++|+. +..|+..+.... ++.|+++|+||+|+.+ .+.+..++++++|+++++ .|++
T Consensus 88 vIlVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~E 166 (232)
T cd04174 88 VLLCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLE 166 (232)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEE
Confidence 999999999999998 588999988765 5789999999999864 366888999999999999 6999
Q ss_pred eccCCCC-CHHHHHHHHHHHHhhh
Q 030524 151 TSAKAGF-NIKLCCHTLNSLITVC 173 (175)
Q Consensus 151 ~s~~~~~-~v~~~f~~l~~~~~~~ 173 (175)
|||++|+ |++++|..++..+...
T Consensus 167 tSAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 167 CSAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred ccCCcCCcCHHHHHHHHHHHHHHh
Confidence 9999998 8999999998877653
No 24
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=1.3e-36 Score=205.33 Aligned_cols=163 Identities=40% Similarity=0.719 Sum_probs=150.5
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (175)
.+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++++...+..+++++|++|+|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 37999999999999999999999888888888888888888888888889999999999999999999999999999999
Q ss_pred EECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHH
Q 030524 89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNS 168 (175)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~ 168 (175)
||++++++|+.+..|+..+.....++.|+++++||+|+.+.......++..++..++++++++|+++|+|+.++|.++.+
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 161 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR 161 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence 99999999999999999998776567999999999999877778888899999999999999999999999999999998
Q ss_pred HHh
Q 030524 169 LIT 171 (175)
Q Consensus 169 ~~~ 171 (175)
.+.
T Consensus 162 ~~~ 164 (166)
T cd01869 162 EIK 164 (166)
T ss_pred HHH
Confidence 775
No 25
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=1e-36 Score=208.29 Aligned_cols=166 Identities=39% Similarity=0.641 Sum_probs=149.4
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEEC----------CeEEEEEEEeCCCcccccccccc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE----------DRTVRLQLWDTAGQERFRSLIPS 77 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~D~~G~~~~~~~~~~ 77 (175)
..+||+++|++|+|||||++++..+.+...+.++.+.++....+... +..+.+.+||++|++++...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 35899999999999999999999999888888988888776666543 45688999999999999999999
Q ss_pred cccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCC
Q 030524 78 YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG 156 (175)
Q Consensus 78 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 156 (175)
+++++|++++|||++++++|..+..|+..+..... ++.|+++|+||+|+.+.+....++...++.+++++++++||++|
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~ 162 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATG 162 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 99999999999999999999999999999877643 57899999999999887888888899999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhh
Q 030524 157 FNIKLCCHTLNSLITVC 173 (175)
Q Consensus 157 ~~v~~~f~~l~~~~~~~ 173 (175)
.|++++|++|.+.+..+
T Consensus 163 ~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 163 TNVEKAVERLLDLVMKR 179 (180)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999888764
No 26
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.5e-36 Score=210.94 Aligned_cols=164 Identities=37% Similarity=0.574 Sum_probs=148.7
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEEC-CeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (175)
+||+++|++|+|||||+++|+.+.+...+.++.+.++....+..+ +..+.+.+||++|++++..++..+++++|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999998888889999888887777777 7788999999999999999999999999999999
Q ss_pred EECCChhhHHhHHHHHHHHHHhc----CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcC-CeEEEeccCCCCCHHHHH
Q 030524 89 YDVASRQSFLNTSKWIDEVRTER----GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKAGFNIKLCC 163 (175)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~~~~~~----~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v~~~f 163 (175)
||++++++|+.+..|+..+.... ..++|+++|+||+|+.+.+.....++..+++..+ ++++++||++|.|++++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 99999999999999998886542 2578999999999997667788889999999999 699999999999999999
Q ss_pred HHHHHHHhhh
Q 030524 164 HTLNSLITVC 173 (175)
Q Consensus 164 ~~l~~~~~~~ 173 (175)
.+|.+.+...
T Consensus 161 ~~l~~~l~~~ 170 (201)
T cd04107 161 RFLVKNILAN 170 (201)
T ss_pred HHHHHHHHHh
Confidence 9999887654
No 27
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=1.4e-36 Score=204.26 Aligned_cols=161 Identities=42% Similarity=0.721 Sum_probs=153.7
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEE
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (175)
||+++|++|||||||+++|.++.+...+.++.+.+.....+..++..+.+.+||++|++++......++.++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999999899999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 030524 91 VASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170 (175)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~~ 170 (175)
++++++|+.+..|+..+....+.+.|+++++||.|+.+.+++..++++.++++++++|+++|++++.|+.++|..+++.+
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998876799999999999988889999999999999999999999999999999999999887
Q ss_pred h
Q 030524 171 T 171 (175)
Q Consensus 171 ~ 171 (175)
.
T Consensus 161 ~ 161 (162)
T PF00071_consen 161 L 161 (162)
T ss_dssp H
T ss_pred h
Confidence 5
No 28
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=1.6e-36 Score=204.90 Aligned_cols=162 Identities=32% Similarity=0.574 Sum_probs=149.3
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (175)
+||+++|++|+|||||+++++++.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999988889999998888888888899999999999999999999999999999999999
Q ss_pred ECCChhhHHhHHHHHHHHHHhcC-----CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHH
Q 030524 90 DVASRQSFLNTSKWIDEVRTERG-----SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCH 164 (175)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~~-----~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~ 164 (175)
|++++++++.+..|+..+..... .+.|+++++||+|+.+.......+...++...+++++++||++|.|+.++|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999988764 4799999999999976667778888888998999999999999999999999
Q ss_pred HHHHHHh
Q 030524 165 TLNSLIT 171 (175)
Q Consensus 165 ~l~~~~~ 171 (175)
+|.+.+.
T Consensus 161 ~l~~~l~ 167 (168)
T cd04119 161 TLFSSIV 167 (168)
T ss_pred HHHHHHh
Confidence 9998765
No 29
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=2.7e-36 Score=206.35 Aligned_cols=162 Identities=22% Similarity=0.477 Sum_probs=143.6
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (175)
+||+++|+.|+|||||+++++.+.+..++.++.+.++....+..++..+.+.+||++|+++|..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999988889999998888888888998999999999999999999999999999999999
Q ss_pred ECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----CCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHH
Q 030524 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK-----RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCH 164 (175)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~ 164 (175)
|++++++|+.+..|+..+........| ++|+||+|+.++ ......+.+++++..+++++++||++|.|++++|.
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999876555667 578999998531 12234567788888999999999999999999999
Q ss_pred HHHHHHhh
Q 030524 165 TLNSLITV 172 (175)
Q Consensus 165 ~l~~~~~~ 172 (175)
++.+.+..
T Consensus 160 ~l~~~l~~ 167 (182)
T cd04128 160 IVLAKAFD 167 (182)
T ss_pred HHHHHHHh
Confidence 99987754
No 30
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=2.6e-36 Score=203.10 Aligned_cols=161 Identities=35% Similarity=0.536 Sum_probs=142.9
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (175)
.+||+++|++|||||||+++++.+.+...+.++.+ +.+...+.+++..+.+.+||+||++++..++..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence 37999999999999999999999887777777765 45556677888888999999999999999999999999999999
Q ss_pred EECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524 89 YDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLN 167 (175)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~ 167 (175)
||++++++++.+..|+..+..... .+.|+++++||+|+.+.+.....+...+++.++++++++||++|.|+.++|.++.
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04136 80 YSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999999887644 6799999999999977666777778888888889999999999999999999998
Q ss_pred HHH
Q 030524 168 SLI 170 (175)
Q Consensus 168 ~~~ 170 (175)
+.+
T Consensus 160 ~~~ 162 (163)
T cd04136 160 RQI 162 (163)
T ss_pred Hhc
Confidence 764
No 31
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=7.9e-36 Score=205.30 Aligned_cols=165 Identities=42% Similarity=0.688 Sum_probs=151.4
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (175)
+||+++|++|||||||++++..+.+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++++|++|+||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999888778888888888888888888899999999999999999999999999999999
Q ss_pred ECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHH
Q 030524 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSL 169 (175)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~ 169 (175)
|++++++|..+..|+..+........|+++++||.|+.+.......++..++...+++++++||++|.|++++|.+|.+.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999988776679999999999998777778888888999899999999999999999999999998
Q ss_pred Hhhhh
Q 030524 170 ITVCI 174 (175)
Q Consensus 170 ~~~~~ 174 (175)
+..+.
T Consensus 161 ~~~~~ 165 (188)
T cd04125 161 IIKRL 165 (188)
T ss_pred HHHHh
Confidence 87643
No 32
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.7e-37 Score=195.37 Aligned_cols=163 Identities=38% Similarity=0.655 Sum_probs=156.5
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (175)
-+||+++|+.|+|||+|++++..+-+++....+.++++..+.+.++|.++++++|||+|+++|++....|++.+|++|+|
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv 86 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHH
Q 030524 89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNS 168 (175)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~ 168 (175)
||++...+|+-+..|+.++..+....+--|+|+||.|+.+.+++....++.|+.....-|+++||+..++++.+|..+..
T Consensus 87 ydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a~ 166 (213)
T KOG0095|consen 87 YDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLAC 166 (213)
T ss_pred EecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHHH
Confidence 99999999999999999999999888999999999999999999999999999998889999999999999999998876
Q ss_pred HHh
Q 030524 169 LIT 171 (175)
Q Consensus 169 ~~~ 171 (175)
.+.
T Consensus 167 rli 169 (213)
T KOG0095|consen 167 RLI 169 (213)
T ss_pred HHH
Confidence 654
No 33
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=1.1e-35 Score=200.57 Aligned_cols=162 Identities=38% Similarity=0.725 Sum_probs=149.2
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (175)
.+||+++|++|||||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++++..++..++++++++|+|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 47999999999999999999999988878888888888888888888888999999999999999999999999999999
Q ss_pred EECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHH
Q 030524 89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNS 168 (175)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~ 168 (175)
||++++.+++.+..|+..+......+.|+++++||.|+...++...++...++...+++++++||++|.|++++|+++.+
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 162 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLT 162 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999998877667999999999999877777888888999988999999999999999999999987
Q ss_pred HH
Q 030524 169 LI 170 (175)
Q Consensus 169 ~~ 170 (175)
.+
T Consensus 163 ~i 164 (165)
T cd01868 163 EI 164 (165)
T ss_pred Hh
Confidence 64
No 34
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=8.6e-36 Score=209.00 Aligned_cols=163 Identities=36% Similarity=0.548 Sum_probs=148.7
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECC-eEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (175)
+||+++|++|+|||||+++|.++.+...+.++.+.+++...+.+++ ..+.+.+||++|++.+..++..++.++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999998889999999998888888765 578999999999999999999999999999999
Q ss_pred EECCChhhHHhHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHH
Q 030524 89 YDVASRQSFLNTSKWIDEVRTERG---SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHT 165 (175)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~ 165 (175)
||++++++|+.+..|+..+..... .+.|+++|+||+|+.+.+.+...+.+.+++.++++++++||++|+|++++|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 999999999999999999987653 35789999999999877888888999999999999999999999999999999
Q ss_pred HHHHHhh
Q 030524 166 LNSLITV 172 (175)
Q Consensus 166 l~~~~~~ 172 (175)
+.+.+..
T Consensus 161 l~~~l~~ 167 (215)
T cd04109 161 LAAELLG 167 (215)
T ss_pred HHHHHHh
Confidence 9988753
No 35
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=1.5e-35 Score=200.51 Aligned_cols=164 Identities=37% Similarity=0.685 Sum_probs=150.2
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (175)
.+||+++|++|+|||||+++++...+...+.++.+.+.....+..++....+.+||++|++++..+...+++++|++++|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 38999999999999999999999988888788888888888888888888999999999999999999999999999999
Q ss_pred EECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHH
Q 030524 89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNS 168 (175)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~ 168 (175)
||++++++++.+..|+..+.....++.|+++++||.|+.+.......+.+.++...++.++++|++.+.|+.++|.++.+
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~ 163 (168)
T cd01866 84 YDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAK 163 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999998876678999999999999877777888888999999999999999999999999999988
Q ss_pred HHhh
Q 030524 169 LITV 172 (175)
Q Consensus 169 ~~~~ 172 (175)
.+..
T Consensus 164 ~~~~ 167 (168)
T cd01866 164 EIYE 167 (168)
T ss_pred HHHh
Confidence 7653
No 36
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=1.6e-35 Score=207.69 Aligned_cols=165 Identities=38% Similarity=0.680 Sum_probs=153.1
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (175)
..+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++++..++..++++++++|+
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il 90 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence 56899999999999999999999998887888999989888888899988999999999999999999999999999999
Q ss_pred EEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLN 167 (175)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~ 167 (175)
|||++++.+|+.+..|+..+......++|+++++||+|+.+.+.....+...++..++++++++||++|.|++++|+++.
T Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~ 170 (216)
T PLN03110 91 VYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTIL 170 (216)
T ss_pred EEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999999999887767899999999999987778888889999999999999999999999999999998
Q ss_pred HHHhh
Q 030524 168 SLITV 172 (175)
Q Consensus 168 ~~~~~ 172 (175)
+.+..
T Consensus 171 ~~i~~ 175 (216)
T PLN03110 171 LEIYH 175 (216)
T ss_pred HHHHH
Confidence 88754
No 37
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=1.1e-35 Score=199.79 Aligned_cols=161 Identities=37% Similarity=0.690 Sum_probs=148.2
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (175)
+||+++|++|+|||||+++++.+.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999888888888887888888888888889999999999999999999999999999999
Q ss_pred ECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHH
Q 030524 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSL 169 (175)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~ 169 (175)
|+++++++..+..|+..+.....++.|+++++||.|+.+.......+...++...++.++++|++++.|+.++|+++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 99999999999999998887766789999999999998777788889999999999999999999999999999999875
Q ss_pred H
Q 030524 170 I 170 (175)
Q Consensus 170 ~ 170 (175)
+
T Consensus 161 ~ 161 (161)
T cd04113 161 I 161 (161)
T ss_pred C
Confidence 3
No 38
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=8.9e-36 Score=200.82 Aligned_cols=161 Identities=32% Similarity=0.521 Sum_probs=142.7
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (175)
++||+++|++|+|||||+++++.+.+...+.++.+.. .......++..+.+.+||++|++++..++..+++++|++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDS-YRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 4799999999999999999999887777777777643 345677788888999999999999999999999999999999
Q ss_pred EECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524 89 YDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLN 167 (175)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~ 167 (175)
||++++.+|+.+..|+..+..... .+.|+++++||+|+.+.......+...+++.++++++++||++|.|++++|.++.
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 999999999999999999887643 6899999999999987666777778888888999999999999999999999998
Q ss_pred HHH
Q 030524 168 SLI 170 (175)
Q Consensus 168 ~~~ 170 (175)
+.+
T Consensus 160 ~~l 162 (164)
T cd04175 160 RQI 162 (164)
T ss_pred HHh
Confidence 765
No 39
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=1.5e-35 Score=204.03 Aligned_cols=166 Identities=32% Similarity=0.523 Sum_probs=147.3
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
...+||+++|++|+|||||+++++.+.+...+.++.+..+ ...+.+++..+.+.+|||+|++++..++..+++++|+++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii 81 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL 81 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence 3469999999999999999999999888777778776444 566678888889999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHT 165 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~ 165 (175)
+|||++++++|+.+..|+..+..... .+.|+++++||+|+.+.+.+...+...++..++++++++||++|.|+.++|.+
T Consensus 82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~ 161 (189)
T PTZ00369 82 CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE 161 (189)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence 99999999999999999998877643 58999999999998777777777888888888999999999999999999999
Q ss_pred HHHHHhhh
Q 030524 166 LNSLITVC 173 (175)
Q Consensus 166 l~~~~~~~ 173 (175)
|.+.+...
T Consensus 162 l~~~l~~~ 169 (189)
T PTZ00369 162 LVREIRKY 169 (189)
T ss_pred HHHHHHHH
Confidence 99877654
No 40
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.5e-35 Score=206.95 Aligned_cols=165 Identities=38% Similarity=0.698 Sum_probs=149.4
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEE-CCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (175)
.+||+++|++|+|||||+++++.+.+...+.++.+.++....+.+ ++..+.+.+||++|++.+...+..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 489999999999999999999999888878888888888777766 4667899999999999999999999999999999
Q ss_pred EEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524 88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166 (175)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l 166 (175)
|||++++++|+.+..|+..+..... ...|+++++||.|+.+.+.+...+..++++.++++++++|+++|.|++++|++|
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l 161 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL 161 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999999987654 467889999999998877888889999999999999999999999999999999
Q ss_pred HHHHhhh
Q 030524 167 NSLITVC 173 (175)
Q Consensus 167 ~~~~~~~ 173 (175)
.+.+...
T Consensus 162 ~~~~~~~ 168 (211)
T cd04111 162 TQEIYER 168 (211)
T ss_pred HHHHHHH
Confidence 9887654
No 41
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=2.4e-35 Score=205.96 Aligned_cols=170 Identities=35% Similarity=0.652 Sum_probs=154.4
Q ss_pred CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 030524 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (175)
Q Consensus 5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (175)
+....+||+++|++|+|||||+++++...+...+.++.+.++....+.+++..+.+.+||++|++.+..++..++.++|+
T Consensus 2 ~~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~ 81 (210)
T PLN03108 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (210)
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence 34456999999999999999999999988887788888888888888888888899999999999999999999999999
Q ss_pred EEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHH
Q 030524 85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCH 164 (175)
Q Consensus 85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~ 164 (175)
+++|||++++++|+.+..|+..+......+.|+++++||+|+.+.+.....+.++++++++++++++|++++.|+.++|.
T Consensus 82 ~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~ 161 (210)
T PLN03108 82 ALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161 (210)
T ss_pred EEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999988777667899999999999987778888899999999999999999999999999999
Q ss_pred HHHHHHhhhh
Q 030524 165 TLNSLITVCI 174 (175)
Q Consensus 165 ~l~~~~~~~~ 174 (175)
++++.+..++
T Consensus 162 ~l~~~~~~~~ 171 (210)
T PLN03108 162 KTAAKIYKKI 171 (210)
T ss_pred HHHHHHHHHh
Confidence 9998887543
No 42
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.1e-35 Score=199.25 Aligned_cols=162 Identities=39% Similarity=0.678 Sum_probs=147.3
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (175)
..+||+++|++|+|||||++++..+.+...+.++.+.++....+..++..+.+.+||+||++.+...+..++.++|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 35899999999999999999999988888888888877777788888888899999999999999999999999999999
Q ss_pred EEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC-eEEEeccCCCCCHHHHHHHH
Q 030524 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKLCCHTL 166 (175)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~f~~l 166 (175)
|||++++++++.+..|+..+......++|+++|+||+|+.+.++....++..+++..++ .++++|+++|.|++++|.++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l 161 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM 161 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999877667899999999999987777788888889998886 78999999999999999999
Q ss_pred HHH
Q 030524 167 NSL 169 (175)
Q Consensus 167 ~~~ 169 (175)
.+.
T Consensus 162 ~~~ 164 (165)
T cd01864 162 ATE 164 (165)
T ss_pred HHh
Confidence 875
No 43
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=1.8e-35 Score=207.66 Aligned_cols=164 Identities=30% Similarity=0.536 Sum_probs=146.3
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
...+||+++|++|||||||+++++.+.+...+.++.+.++....+..++..+.+.+||++|+++|..++..+++++|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 66799999999999999999999999888888999988888888878888899999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l 166 (175)
+|||++++++|+.+..|+..+.... .+.|+++|+||+|+.+ +.....+. .++...+++++++||++|.|+.++|.+|
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l 167 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence 9999999999999999999998765 5799999999999853 33344444 6777888999999999999999999999
Q ss_pred HHHHhhh
Q 030524 167 NSLITVC 173 (175)
Q Consensus 167 ~~~~~~~ 173 (175)
.+.+...
T Consensus 168 ~~~~~~~ 174 (219)
T PLN03071 168 ARKLAGD 174 (219)
T ss_pred HHHHHcC
Confidence 9888643
No 44
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=2.2e-35 Score=204.73 Aligned_cols=164 Identities=38% Similarity=0.685 Sum_probs=149.9
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (175)
..++|+++|++|+|||||++++.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++.++|++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 46899999999999999999999998888888888888888888888888899999999999999999999999999999
Q ss_pred EEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLN 167 (175)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~ 167 (175)
|||++++++|+.+..|+..+.... ...|+++++||+|+.+.......+...++...+++++++|+++|.|+.++|++|.
T Consensus 85 v~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~ 163 (199)
T cd04110 85 VYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCIT 163 (199)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHH
Confidence 999999999999999999987654 5789999999999987777778888889999999999999999999999999999
Q ss_pred HHHhh
Q 030524 168 SLITV 172 (175)
Q Consensus 168 ~~~~~ 172 (175)
+.+..
T Consensus 164 ~~~~~ 168 (199)
T cd04110 164 ELVLR 168 (199)
T ss_pred HHHHH
Confidence 88764
No 45
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=7.7e-37 Score=196.46 Aligned_cols=167 Identities=40% Similarity=0.690 Sum_probs=154.4
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEE-CCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
..++++++|++-+|||||++.+..+++.+-.+|+.+++++...+.. +|..+++++|||+|+++|++..+.|++|+=+++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 3589999999999999999999999999889999999999887766 677899999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcC-CC-CcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERG-SD-VIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCH 164 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~-~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~ 164 (175)
+|||++|+++|+.+..|+++-..+.. +. +-+.+|++|+|+...++++.++++++++.+|..|+++|+++|.||++.|+
T Consensus 87 lvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~ 166 (213)
T KOG0091|consen 87 LVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFD 166 (213)
T ss_pred EEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHH
Confidence 99999999999999999999888765 44 44678899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhh
Q 030524 165 TLNSLITVCI 174 (175)
Q Consensus 165 ~l~~~~~~~~ 174 (175)
.|.+.+..++
T Consensus 167 mlaqeIf~~i 176 (213)
T KOG0091|consen 167 MLAQEIFQAI 176 (213)
T ss_pred HHHHHHHHHH
Confidence 9999987654
No 46
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=1.6e-35 Score=199.13 Aligned_cols=159 Identities=37% Similarity=0.673 Sum_probs=144.8
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEEC--CeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE--DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (175)
+||+++|++|+|||||+++++.+.+...+.++.+.++....+..+ +..+.+.+||+||++++...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999998888888888888877777776 778899999999999999999999999999999
Q ss_pred EEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLN 167 (175)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~ 167 (175)
|||++++++++.+..|+..+.... .++|+++++||.|+..+..+..+++..+++.++++++++|+++|.|++++|++|.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999999887654 5899999999999987777788889999999999999999999999999999987
Q ss_pred HH
Q 030524 168 SL 169 (175)
Q Consensus 168 ~~ 169 (175)
+.
T Consensus 160 ~~ 161 (162)
T cd04106 160 EK 161 (162)
T ss_pred Hh
Confidence 64
No 47
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=2.1e-35 Score=200.93 Aligned_cols=159 Identities=30% Similarity=0.475 Sum_probs=139.7
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (175)
+||+++|++|+|||||+.+++.+.+..++.++.+..+ ...+..++..+.+.+||++|++++..++..++.++|++|+||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-EEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 7999999999999999999999998888888887554 445677888899999999999999999999999999999999
Q ss_pred ECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHhcC-CeEEEeccCC
Q 030524 90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELN-VMFIETSAKA 155 (175)
Q Consensus 90 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~s~~~ 155 (175)
|++++++|+.+. .|+..+.... +++|+++++||+|+.+. +.+...++++++++.+ +.+++|||++
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t 159 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence 999999999996 5888876654 57999999999998543 5667788888998887 6999999999
Q ss_pred CCCHHHHHHHHHHHH
Q 030524 156 GFNIKLCCHTLNSLI 170 (175)
Q Consensus 156 ~~~v~~~f~~l~~~~ 170 (175)
|+|++++|+.++..+
T Consensus 160 g~~v~~~f~~~~~~~ 174 (175)
T cd01874 160 QKGLKNVFDEAILAA 174 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999988743
No 48
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.1e-35 Score=203.63 Aligned_cols=164 Identities=40% Similarity=0.724 Sum_probs=148.1
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (175)
+||+++|++|+|||||++++..+.+. ..+.++.+.++....+.+++..+.+.+||+||++++...+..+++++|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 58999999999999999999998775 46777887777777788888889999999999999999999999999999999
Q ss_pred EECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHH
Q 030524 89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNS 168 (175)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~ 168 (175)
||++++++++.+..|+..+......++|+++++||.|+..++.....+...++..++++++++|+++|.|++++|.++.+
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~ 160 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999998876668999999999999777777788888999999999999999999999999999998
Q ss_pred HHhhh
Q 030524 169 LITVC 173 (175)
Q Consensus 169 ~~~~~ 173 (175)
.+...
T Consensus 161 ~~~~~ 165 (191)
T cd04112 161 ELKHR 165 (191)
T ss_pred HHHHh
Confidence 87653
No 49
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=1.8e-35 Score=199.10 Aligned_cols=161 Identities=34% Similarity=0.540 Sum_probs=143.1
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (175)
++||+++|.+|+|||||+++++.+.+...+.++.+ +.....+.+++....+.+||++|++++..++..++.++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 47999999999999999999999988877777765 55566777888888999999999999999999999999999999
Q ss_pred EECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524 89 YDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLN 167 (175)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~ 167 (175)
||++++++|+.+..|+..+..... .++|+++++||+|+.+.......+...++..++++++++||++|.|+.++|.++.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999998887643 6899999999999976666677778888888899999999999999999999998
Q ss_pred HHH
Q 030524 168 SLI 170 (175)
Q Consensus 168 ~~~ 170 (175)
+.+
T Consensus 160 ~~l 162 (163)
T cd04176 160 RQM 162 (163)
T ss_pred Hhc
Confidence 754
No 50
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=4.2e-37 Score=196.79 Aligned_cols=166 Identities=39% Similarity=0.659 Sum_probs=159.4
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (175)
.++||+++|...+|||||+-+++.++++..+.++....+..+...+++....++||||+|+++|..+-..|++.+|++++
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalL 91 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALL 91 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEE
Confidence 46999999999999999999999999999989988888888999999999999999999999999999999999999999
Q ss_pred EEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLN 167 (175)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~ 167 (175)
|||++|++||+.++.|..+++...+..+-+++|+||.|+.+++.+..++++..+...|+.++++||+++.|+.++|..|.
T Consensus 92 VyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~Lt 171 (218)
T KOG0088|consen 92 VYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESLT 171 (218)
T ss_pred EEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhh
Q 030524 168 SLITVC 173 (175)
Q Consensus 168 ~~~~~~ 173 (175)
+.+.+.
T Consensus 172 ~~MiE~ 177 (218)
T KOG0088|consen 172 AKMIEH 177 (218)
T ss_pred HHHHHH
Confidence 988764
No 51
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=3.1e-35 Score=198.59 Aligned_cols=160 Identities=31% Similarity=0.566 Sum_probs=142.0
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (175)
+||+++|++|||||||+++++.+.+...+.++.+.+........++..+.+.+||++|++.+..++..++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999988888888888888887777777888899999999999999999999999999999999
Q ss_pred ECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHH
Q 030524 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSL 169 (175)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~ 169 (175)
|++++++++.+..|+..+..... ++|+++++||+|+.+ +... .+..+++...+++++++||++|+|++++|++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 157 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence 99999999999999999988764 899999999999863 2333 34556777778899999999999999999999988
Q ss_pred Hhh
Q 030524 170 ITV 172 (175)
Q Consensus 170 ~~~ 172 (175)
+..
T Consensus 158 ~~~ 160 (166)
T cd00877 158 LLG 160 (166)
T ss_pred HHh
Confidence 764
No 52
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=3.8e-35 Score=198.78 Aligned_cols=162 Identities=35% Similarity=0.599 Sum_probs=144.4
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEE
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (175)
||+++|++|+|||||+++++.+.+..++.++.+.++......+++..+.+.+||++|+++|..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999988999999988888888888888999999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCC--CCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524 91 VASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQ--VSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLN 167 (175)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~ 167 (175)
++++++++.+..|+..+..... ...|+++|+||.|+.+... ....++..++++++++++++||++|.|++++|..+.
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999998876543 4578999999999865433 345667788888899999999999999999999998
Q ss_pred HHHhh
Q 030524 168 SLITV 172 (175)
Q Consensus 168 ~~~~~ 172 (175)
+.+.+
T Consensus 162 ~~~~~ 166 (170)
T cd04108 162 ALTFE 166 (170)
T ss_pred HHHHH
Confidence 87754
No 53
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=2e-35 Score=203.62 Aligned_cols=162 Identities=36% Similarity=0.566 Sum_probs=143.2
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEE
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (175)
||+++|.+|+|||||+++|+.+.+...+.++.+..+ ......++..+.+.+||++|+++|..++..+++++|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 689999999999999999999888777777776433 4456678888899999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524 91 VASRQSFLNTSKWIDEVRTERG---SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLN 167 (175)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~ 167 (175)
++++++|+.+..|+..+..... .+.|+++|+||+|+.+.+.....+...++..++++++++||++|.|++++|.++.
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999998876543 5789999999999987777888888889999999999999999999999999999
Q ss_pred HHHhhh
Q 030524 168 SLITVC 173 (175)
Q Consensus 168 ~~~~~~ 173 (175)
+.+..+
T Consensus 160 ~~l~~~ 165 (190)
T cd04144 160 RALRQQ 165 (190)
T ss_pred HHHHHh
Confidence 877543
No 54
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=4.5e-35 Score=196.72 Aligned_cols=160 Identities=82% Similarity=1.177 Sum_probs=147.2
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (175)
+||+++|++|||||||++++++..+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++++|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999888888888888888888888888889999999999999999999999999999999
Q ss_pred ECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHH
Q 030524 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSL 169 (175)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~ 169 (175)
|++++++|+.+..|+..+....+.+.|+++++||+|+.+..+....+...+++..+++++++|++++.|++++|.++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 99999999999999999887765679999999999997777778888888898889999999999999999999999875
No 55
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=5.8e-35 Score=196.62 Aligned_cols=163 Identities=45% Similarity=0.770 Sum_probs=150.0
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (175)
+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++++|++|+||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999998888888888888888888888888889999999999999999999999999999999
Q ss_pred ECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHH
Q 030524 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSL 169 (175)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~ 169 (175)
|++++++++.+..|+..+..+...++|+++++||+|+.+.++...+..+.+++.++++++++|+++|.|++++|+++.+.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999988876789999999999987767778888888999999999999999999999999999988
Q ss_pred Hhh
Q 030524 170 ITV 172 (175)
Q Consensus 170 ~~~ 172 (175)
+.+
T Consensus 161 ~~~ 163 (164)
T smart00175 161 ILK 163 (164)
T ss_pred Hhh
Confidence 754
No 56
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=4.8e-35 Score=198.38 Aligned_cols=162 Identities=37% Similarity=0.611 Sum_probs=147.7
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccccc-ccccccccCCcEEEE
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-SLIPSYIRDSSVAVV 87 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~~i~ 87 (175)
.++|+++|++|+|||||+++++.+.+...+.++.+.++....+..++..+.+.+||++|++++. .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 4799999999999999999999988887888888888888888889988999999999999887 578889999999999
Q ss_pred EEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCC---CCCHHHHH
Q 030524 88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA---GFNIKLCC 163 (175)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~~v~~~f 163 (175)
|||++++++++.+..|+..+..... .++|+++++||+|+.+.++....+...++...+++++++||++ +.+++++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f 161 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence 9999999999999999998887653 6799999999999988888888889999999999999999999 99999999
Q ss_pred HHHHHHH
Q 030524 164 HTLNSLI 170 (175)
Q Consensus 164 ~~l~~~~ 170 (175)
..+.+.+
T Consensus 162 ~~l~~~~ 168 (170)
T cd04115 162 MTLAHKL 168 (170)
T ss_pred HHHHHHh
Confidence 9998876
No 57
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=4.9e-35 Score=198.90 Aligned_cols=159 Identities=31% Similarity=0.499 Sum_probs=139.8
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (175)
.+||+++|++|+|||||+.+++.+.+..++.++.. +.+...+..++..+.+.+|||+|++.+...+..+++++|++|+|
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 79 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEE
Confidence 37999999999999999999999988888888875 45555667888889999999999999999999999999999999
Q ss_pred EECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHhcCC-eEEEeccC
Q 030524 89 YDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETSAK 154 (175)
Q Consensus 89 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~ 154 (175)
||++++++|+.+. .|+..+.... ++.|+++++||+|+.+. +.+...++..++.+++. ++++|||+
T Consensus 80 ~d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 158 (174)
T cd01871 80 FSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 158 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999999986 5877776654 58999999999998542 35778889999999985 99999999
Q ss_pred CCCCHHHHHHHHHHH
Q 030524 155 AGFNIKLCCHTLNSL 169 (175)
Q Consensus 155 ~~~~v~~~f~~l~~~ 169 (175)
+|+|++++|..+.+.
T Consensus 159 ~~~~i~~~f~~l~~~ 173 (174)
T cd01871 159 TQKGLKTVFDEAIRA 173 (174)
T ss_pred ccCCHHHHHHHHHHh
Confidence 999999999998764
No 58
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=7.2e-35 Score=197.45 Aligned_cols=162 Identities=39% Similarity=0.597 Sum_probs=145.7
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
...+||+++|++|+|||||+++++.+.+.+.+.++.+.++....+..++..+.+.+||+||++++..++..+++++|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 35699999999999999999999999888888888888877778888999999999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC-eEEEeccCCCCCHHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKL 161 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~ 161 (175)
+|||++++++++.+..|...+..... .++|+++++||+|+. .+.....+++++++++++ +++++||++|.|+.+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 161 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAA 161 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHH
Confidence 99999999999999999998876542 568999999999986 566678888999998885 899999999999999
Q ss_pred HHHHHHHH
Q 030524 162 CCHTLNSL 169 (175)
Q Consensus 162 ~f~~l~~~ 169 (175)
+|.++++.
T Consensus 162 ~~~~~~~~ 169 (170)
T cd04116 162 AFEEAVRR 169 (170)
T ss_pred HHHHHHhh
Confidence 99998875
No 59
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=6.3e-35 Score=204.09 Aligned_cols=158 Identities=35% Similarity=0.576 Sum_probs=138.3
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (175)
+||+++|.+|+|||||+++++.+.+.. +.++.+.++..... ..+.+.+||++|++.|..++..+++++|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999988764 46677666554432 4578999999999999999999999999999999
Q ss_pred ECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-------------------CCCCCHHHHHHHHHhcC-----
Q 030524 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE-------------------KRQVSIEEGEAKSRELN----- 145 (175)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~-------------------~~~~~~~~~~~~~~~~~----- 145 (175)
|++++++|+.+..|+..+......++|+++|+||+|+.+ .+++..+++..++++.+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999999998888776567899999999999975 57788899999999876
Q ss_pred ---------CeEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524 146 ---------VMFIETSAKAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 146 ---------~~~~~~s~~~~~~v~~~f~~l~~~~~~ 172 (175)
++|++|||++|.||+++|..+++.+..
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~ 191 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP 191 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999999887764
No 60
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=6.1e-35 Score=196.68 Aligned_cols=161 Identities=37% Similarity=0.564 Sum_probs=142.1
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (175)
+||+++|++|||||||++++++..+...+.++.+ +.......+++..+.+.+||+||++++..++..+++++|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 4899999999999999999999887777777665 444566677888889999999999999999999999999999999
Q ss_pred ECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHH
Q 030524 90 DVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNS 168 (175)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~ 168 (175)
|++++++++.+..|...+..... .+.|+++++||+|+.+.+.....+...+++..+++++++||++|.|++++|++|.+
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 99999999999999888876644 57899999999999776667777888889889999999999999999999999998
Q ss_pred HHh
Q 030524 169 LIT 171 (175)
Q Consensus 169 ~~~ 171 (175)
.+.
T Consensus 160 ~~~ 162 (164)
T smart00173 160 EIR 162 (164)
T ss_pred HHh
Confidence 765
No 61
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=1.3e-34 Score=195.02 Aligned_cols=161 Identities=35% Similarity=0.567 Sum_probs=141.7
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (175)
.+||+++|++|+|||||++++++......+.++.+ +.+.....+++..+.+.+||+||++++..++..+++++|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcc-ceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 47999999999999999999999887777777765 33445566788888999999999999999999999999999999
Q ss_pred EECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524 89 YDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLN 167 (175)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~ 167 (175)
||++++.+++.+..|+..+..... .+.|+++++||+|+.........+..++++..+++++++||++|.|+.++|+++.
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence 999999999999999998887543 5799999999999977666777788888888899999999999999999999998
Q ss_pred HHH
Q 030524 168 SLI 170 (175)
Q Consensus 168 ~~~ 170 (175)
+.+
T Consensus 161 ~~~ 163 (164)
T cd04145 161 RVI 163 (164)
T ss_pred Hhh
Confidence 764
No 62
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=1.2e-34 Score=194.61 Aligned_cols=160 Identities=32% Similarity=0.523 Sum_probs=140.5
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (175)
.+||+++|++|+|||||+++++++.+...+.++.+. .+.....+++..+.+.+||++|++++..++..+++++|++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchh-eEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 379999999999999999999998877777777763 3456667888888899999999999999999999999999999
Q ss_pred EECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524 89 YDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLN 167 (175)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~ 167 (175)
||++++.+++.+..|+..+..... .+.|+++++||+|+.+ +.....+...++...+++++++||++|.|++++|.++.
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV 158 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999998887654 5799999999999865 45566778888888899999999999999999999998
Q ss_pred HHH
Q 030524 168 SLI 170 (175)
Q Consensus 168 ~~~ 170 (175)
+.+
T Consensus 159 ~~~ 161 (162)
T cd04138 159 REI 161 (162)
T ss_pred HHh
Confidence 754
No 63
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=1.3e-34 Score=202.57 Aligned_cols=162 Identities=22% Similarity=0.459 Sum_probs=140.3
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (175)
++||+++|++|+|||||+.++..+.+..++.++...++ ...+.+++..+.+.+|||+|++.|..++..+++++|++|+|
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~-~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv 79 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENY-TASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC 79 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccce-EEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence 37999999999999999999999998888999987554 45677889999999999999999999999999999999999
Q ss_pred EECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHhcCC-eEEEeccC
Q 030524 89 YDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETSAK 154 (175)
Q Consensus 89 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~ 154 (175)
||++++++|+.+. .|...+.. ..++.|+++|+||+|+.+. ..+...++..++++.++ +|++|||+
T Consensus 80 fdis~~~Sf~~i~~~w~~~~~~-~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk 158 (222)
T cd04173 80 FDISRPETLDSVLKKWQGETQE-FCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR 158 (222)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-hCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence 9999999999984 56665544 3468999999999998542 13677889999999996 99999999
Q ss_pred CCCC-HHHHHHHHHHHHhh
Q 030524 155 AGFN-IKLCCHTLNSLITV 172 (175)
Q Consensus 155 ~~~~-v~~~f~~l~~~~~~ 172 (175)
++++ ++++|......+..
T Consensus 159 ~~~~~V~~~F~~~~~~~~~ 177 (222)
T cd04173 159 SSERSVRDVFHVATVASLG 177 (222)
T ss_pred cCCcCHHHHHHHHHHHHHh
Confidence 9985 99999998876554
No 64
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=1.7e-34 Score=198.81 Aligned_cols=161 Identities=33% Similarity=0.527 Sum_probs=138.9
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (175)
.||+++|++|+|||||++++..+.+...+.++.+..+ ...+..++..+.+.+||++|++.+..++..++.++|++|+||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 3799999999999999999999988888888876554 345667788889999999999999999999999999999999
Q ss_pred ECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC------------CCCHHHHHHHHHhcC-CeEEEeccCC
Q 030524 90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKR------------QVSIEEGEAKSRELN-VMFIETSAKA 155 (175)
Q Consensus 90 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~s~~~ 155 (175)
|++++++|+.+. .|+..+.... ++.|+++|+||+|+.+.+ .+...++..++.+.+ +++++|||++
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999999986 5888887654 589999999999986543 345667778888877 6999999999
Q ss_pred CCCHHHHHHHHHHHHhh
Q 030524 156 GFNIKLCCHTLNSLITV 172 (175)
Q Consensus 156 ~~~v~~~f~~l~~~~~~ 172 (175)
|.|++++|.++.+.+..
T Consensus 159 ~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 159 NRGVNEAFTEAARVALN 175 (189)
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999988764
No 65
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=1.3e-34 Score=195.38 Aligned_cols=159 Identities=33% Similarity=0.483 Sum_probs=138.9
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (175)
+||+++|++|+|||||+++++++.+...+.++.+.. +......++..+.+.+||++|++++..++..++..+|++|+||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDT-YRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchhe-EEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 789999999999999999999998877777776533 3445566777889999999999999999999999999999999
Q ss_pred ECCChhhHHhHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524 90 DVASRQSFLNTSKWIDEVRTERG---SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166 (175)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~~---~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l 166 (175)
|++++++++.+..|+..+..... +++|+++|+||+|+.+.+++...++..++..++++++++||++|+|++++|++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 99999999999999887766543 579999999999997767777778888888899999999999999999999998
Q ss_pred HHH
Q 030524 167 NSL 169 (175)
Q Consensus 167 ~~~ 169 (175)
...
T Consensus 161 ~~~ 163 (165)
T cd04140 161 LNL 163 (165)
T ss_pred Hhc
Confidence 753
No 66
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=2.3e-34 Score=193.59 Aligned_cols=162 Identities=45% Similarity=0.789 Sum_probs=148.4
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (175)
.+||+++|++|+|||||+++++++.+...+.++.+.++....+..++..+.+.+||+||++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999999988777788887777778888889899999999999999999999999999999999
Q ss_pred EECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHH
Q 030524 89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNS 168 (175)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~ 168 (175)
||++++++++....|+..+......++|+++++||+|+.........+...++...+++++++|+++|.|+.++|++|.+
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK 160 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999998877678999999999998766777888888899999999999999999999999999988
Q ss_pred HH
Q 030524 169 LI 170 (175)
Q Consensus 169 ~~ 170 (175)
.+
T Consensus 161 ~l 162 (163)
T cd01860 161 KL 162 (163)
T ss_pred Hh
Confidence 75
No 67
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=2.4e-34 Score=193.38 Aligned_cols=159 Identities=28% Similarity=0.517 Sum_probs=139.2
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (175)
+||+++|++|+|||||+++++.+.+.+.+.++.+.+........++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999998888777777777777777778888899999999999999999999999999999999
Q ss_pred ECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHH
Q 030524 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSL 169 (175)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~ 169 (175)
|++++.+++.+..|+..+.... ++.|+++++||+|+.+. ...+...++...+++++++||++|.|++++|+.+.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL 156 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999987654 57999999999998432 2344556677778999999999999999999999987
Q ss_pred Hhh
Q 030524 170 ITV 172 (175)
Q Consensus 170 ~~~ 172 (175)
+.+
T Consensus 157 ~~~ 159 (161)
T cd04124 157 AVS 159 (161)
T ss_pred HHh
Confidence 764
No 68
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=2.6e-34 Score=198.77 Aligned_cols=164 Identities=26% Similarity=0.340 Sum_probs=137.9
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccccccc--------ccccccC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSYIRD 81 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~~ 81 (175)
+||+++|.+|||||||+++++++.+...+.++.+.+.+...+..++..+.+.+|||||.+.+... ....+++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 58999999999999999999999888888888876766667778888899999999997654321 2344789
Q ss_pred CcEEEEEEECCChhhHHhHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-hcCCeEEEeccCCCC
Q 030524 82 SSVAVVVYDVASRQSFLNTSKWIDEVRTER---GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-ELNVMFIETSAKAGF 157 (175)
Q Consensus 82 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~ 157 (175)
+|++|+|||++++++|+.+..|+..+.... ..++|+++++||+|+.+.+.....+...++. .++++++++||++|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 999999999999999999999999888764 3679999999999997666666666666654 568999999999999
Q ss_pred CHHHHHHHHHHHHhhh
Q 030524 158 NIKLCCHTLNSLITVC 173 (175)
Q Consensus 158 ~v~~~f~~l~~~~~~~ 173 (175)
|++++|..+.+.+..+
T Consensus 161 ~v~~lf~~i~~~~~~~ 176 (198)
T cd04142 161 HILLLFKELLISATTR 176 (198)
T ss_pred CHHHHHHHHHHHhhcc
Confidence 9999999999877643
No 69
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=6e-34 Score=191.82 Aligned_cols=160 Identities=34% Similarity=0.570 Sum_probs=141.2
Q ss_pred eeEEEECCCCCCHHHHHHHHhcC--CCCCcccccceeeEEEEEEEEC-CeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYD--KFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
+||+++|++|||||||++++..+ .+..++.++.+.++.......+ +..+.+.+||+||++.+..++..++.++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 5667888888888777666664 56789999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l 166 (175)
+|||+++++++..+..|++.+.... .+.|+++|+||+|+.+..+....+...++...+++++++|+++|.|+.++|+.+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL 159 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence 9999999999999999999888764 579999999999997777777777777888888999999999999999999999
Q ss_pred HHHH
Q 030524 167 NSLI 170 (175)
Q Consensus 167 ~~~~ 170 (175)
.+.+
T Consensus 160 ~~~~ 163 (164)
T cd04101 160 ARAF 163 (164)
T ss_pred HHHh
Confidence 8765
No 70
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=4.5e-34 Score=197.41 Aligned_cols=155 Identities=28% Similarity=0.530 Sum_probs=139.1
Q ss_pred ECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCCh
Q 030524 15 LGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR 94 (175)
Q Consensus 15 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 94 (175)
+|.+|||||||+++++.+.+...+.++.+.++....+.+++..+.+.+||++|+++|..++..+++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999888888889998888888888889999999999999999999999999999999999999999
Q ss_pred hhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524 95 QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~~~~ 172 (175)
.+|+.+..|+..+.... .++|+++|+||+|+.. +.+.... ..++...++.+++|||++|.|+.++|.+|.+.+..
T Consensus 81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~ 155 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 155 (200)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999998765 5899999999999854 3444433 46788889999999999999999999999987754
No 71
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=9.6e-34 Score=190.17 Aligned_cols=161 Identities=39% Similarity=0.678 Sum_probs=144.7
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (175)
+||+++|++|+|||||+++++++.+...+.++.+.+.........+....+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999998877766677766676777777788889999999999999999999999999999999
Q ss_pred ECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHH
Q 030524 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSL 169 (175)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~ 169 (175)
|++++++++.+..|+..+......++|+++++||+|+.+..+....+...+++..+++++++|++++.|+.++|+++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999988776789999999999998777777888888888899999999999999999999999876
Q ss_pred H
Q 030524 170 I 170 (175)
Q Consensus 170 ~ 170 (175)
+
T Consensus 161 ~ 161 (162)
T cd04123 161 M 161 (162)
T ss_pred h
Confidence 4
No 72
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=1.3e-33 Score=191.42 Aligned_cols=165 Identities=40% Similarity=0.650 Sum_probs=147.0
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (175)
+||+++|++|+|||||++++....+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++++|++|++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999888777888887888788888888889999999999999999999999999999999
Q ss_pred ECCChhhHHhHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcC-CeEEEeccCCCCCHHHHHH
Q 030524 90 DVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKAGFNIKLCCH 164 (175)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v~~~f~ 164 (175)
|++++.+++.+..|...+..... .++|+++++||+|+.++.....++.+.++...+ ++++++|+++|.|++++|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence 99999999999889888766553 379999999999997666667778888888887 7999999999999999999
Q ss_pred HHHHHHhhhh
Q 030524 165 TLNSLITVCI 174 (175)
Q Consensus 165 ~l~~~~~~~~ 174 (175)
++.+.+....
T Consensus 161 ~i~~~~~~~~ 170 (172)
T cd01862 161 TIARKALEQE 170 (172)
T ss_pred HHHHHHHhcc
Confidence 9999887653
No 73
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=7.9e-34 Score=195.17 Aligned_cols=162 Identities=30% Similarity=0.442 Sum_probs=139.5
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEEC-CeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (175)
+||+++|++|+|||||+++++++.+...+.++.+.++.. .+... +..+.+.+|||+|++++...+..++.++|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 589999999999999999999998888888887655543 34454 6778999999999999999999999999999999
Q ss_pred EECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC----CCCCHHHHHHHHHhcCC-eEEEeccCCCCCHHHH
Q 030524 89 YDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK----RQVSIEEGEAKSRELNV-MFIETSAKAGFNIKLC 162 (175)
Q Consensus 89 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~~----~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~ 162 (175)
||++++++|+.+. .|+..+... .++.|+++++||.|+... +.+...+..+++..+++ +++++||++|.|+.++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHF-CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 9999999999986 487777654 358999999999998653 34567888999999998 9999999999999999
Q ss_pred HHHHHHHHhhh
Q 030524 163 CHTLNSLITVC 173 (175)
Q Consensus 163 f~~l~~~~~~~ 173 (175)
|..+.+.+...
T Consensus 159 f~~l~~~~~~~ 169 (187)
T cd04132 159 FDTAIEEALKK 169 (187)
T ss_pred HHHHHHHHHhh
Confidence 99999887653
No 74
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=7.9e-34 Score=193.00 Aligned_cols=159 Identities=32% Similarity=0.500 Sum_probs=138.4
Q ss_pred EEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEEC
Q 030524 12 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDV 91 (175)
Q Consensus 12 i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 91 (175)
|+++|++|+|||||++++.++.+...+.++.. +.+...+..++..+.+.+|||+|++.+..++..+++++|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVF-ENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEE-eeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 58999999999999999999988877777765 44455667788888999999999999999999999999999999999
Q ss_pred CChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHhcCC-eEEEeccCCCC
Q 030524 92 ASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETSAKAGF 157 (175)
Q Consensus 92 ~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~~~~ 157 (175)
+++++|+.+. .|+..+.... ++.|+++++||+|+... ..+...++..+++..+. ++++|||++|.
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999986 5888887654 58999999999998642 23677788889999997 99999999999
Q ss_pred CHHHHHHHHHHHHhh
Q 030524 158 NIKLCCHTLNSLITV 172 (175)
Q Consensus 158 ~v~~~f~~l~~~~~~ 172 (175)
|++++|..+.+.++.
T Consensus 159 ~v~~lf~~l~~~~~~ 173 (174)
T smart00174 159 GVREVFEEAIRAALN 173 (174)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999988754
No 75
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=1e-33 Score=195.26 Aligned_cols=158 Identities=29% Similarity=0.361 Sum_probs=130.2
Q ss_pred ceeEEEECCCCCCHHHHHH-HHhcCC-----CCCccccccee-eEEEEE--------EEECCeEEEEEEEeCCCcccccc
Q 030524 9 KYKLVFLGDQSVGKTSIIT-RFMYDK-----FDNTYQATIGI-DFLSKT--------MYLEDRTVRLQLWDTAGQERFRS 73 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~i~D~~G~~~~~~ 73 (175)
.+||+++|++|+|||||+. ++..+. +..++.+|.+. +.+... ..+++..+.+.+|||+|+++ .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999996 555443 34556677642 323222 25688899999999999875 3
Q ss_pred cccccccCCcEEEEEEECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCC-------------------CCCCC
Q 030524 74 LIPSYIRDSSVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVE-------------------KRQVS 133 (175)
Q Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~-------------------~~~~~ 133 (175)
....+++++|++|+|||++++.+|+.+. .|+..+.... ++.|+++|+||+|+.+ .+.+.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 4567899999999999999999999997 5888887665 5789999999999863 36788
Q ss_pred HHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHH
Q 030524 134 IEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSL 169 (175)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~ 169 (175)
..+++.++++++++|++|||++|.|++++|..+++.
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 999999999999999999999999999999998764
No 76
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.4e-36 Score=189.39 Aligned_cols=160 Identities=39% Similarity=0.716 Sum_probs=151.7
Q ss_pred EEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEEC
Q 030524 13 VFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDV 91 (175)
Q Consensus 13 ~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 91 (175)
+++|++++|||+|+-++..+.+. .+..++.++++..+.+..++..+++++|||+|+++|++....|++.+|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 47899999999999998887765 67899999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHHHh
Q 030524 92 ASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLIT 171 (175)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~~~ 171 (175)
.|+.||++.+.|+.++..+....+.+.+++||+|+.+++.+..++.++++..+++||+++|+++|.+++..|-.|.+.+.
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~ 160 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK 160 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence 99999999999999999998888999999999999999999999999999999999999999999999999999988875
Q ss_pred h
Q 030524 172 V 172 (175)
Q Consensus 172 ~ 172 (175)
.
T Consensus 161 k 161 (192)
T KOG0083|consen 161 K 161 (192)
T ss_pred H
Confidence 4
No 77
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=2.1e-33 Score=196.47 Aligned_cols=167 Identities=38% Similarity=0.639 Sum_probs=144.5
Q ss_pred CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 030524 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (175)
Q Consensus 5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (175)
.....+||+++|++|+|||||+++|+...+ ..+.++.+.++....+..++..+.+.+||+||++++..++..+++++|+
T Consensus 10 ~~~~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (211)
T PLN03118 10 GYDLSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQG 88 (211)
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 334579999999999999999999998875 4567777777777777888888899999999999999999999999999
Q ss_pred EEEEEECCChhhHHhHHH-HHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHH
Q 030524 85 AVVVYDVASRQSFLNTSK-WIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLC 162 (175)
Q Consensus 85 ~i~v~d~~~~~~~~~~~~-~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~ 162 (175)
+|+|||++++++|+.+.. |...+..... .+.|+++|+||+|+.........+...++..++++++++||++|.|++++
T Consensus 89 ~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l 168 (211)
T PLN03118 89 IILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQC 168 (211)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 999999999999999876 5555544332 56899999999999877777788888899999999999999999999999
Q ss_pred HHHHHHHHhh
Q 030524 163 CHTLNSLITV 172 (175)
Q Consensus 163 f~~l~~~~~~ 172 (175)
|.+|.+.+..
T Consensus 169 ~~~l~~~~~~ 178 (211)
T PLN03118 169 FEELALKIME 178 (211)
T ss_pred HHHHHHHHHh
Confidence 9999988754
No 78
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=2.3e-33 Score=193.74 Aligned_cols=162 Identities=35% Similarity=0.608 Sum_probs=142.9
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCC-cccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (175)
+||+++|++|+|||||+++++.+.+.. .+.++.+.++....+.+++..+.+.+||++|++++..++..++.++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999988764 6788888777777888899999999999999999999999999999999999
Q ss_pred EECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC----CCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHH
Q 030524 89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK----RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCH 164 (175)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~ 164 (175)
||++++++++.+..|+..+.... .+.|+++|+||+|+.+. ..+...+...++..++++++++|+++|+|++++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999887653 57999999999998532 34455677888888899999999999999999999
Q ss_pred HHHHHHhh
Q 030524 165 TLNSLITV 172 (175)
Q Consensus 165 ~l~~~~~~ 172 (175)
++.+.+..
T Consensus 160 ~i~~~~~~ 167 (193)
T cd04118 160 KVAEDFVS 167 (193)
T ss_pred HHHHHHHH
Confidence 99988764
No 79
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=100.00 E-value=2e-33 Score=190.14 Aligned_cols=162 Identities=34% Similarity=0.495 Sum_probs=143.0
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (175)
.+||+++|++|+|||||++++.++.+...+.++.+. .....+..++..+.+.+||+||+++|..+++.++.+++++++|
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv 79 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIED-SYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV 79 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchh-eEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence 378999999999999999999998877777777763 4456667788888999999999999999999999999999999
Q ss_pred EECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcC-CeEEEeccCCCCCHHHHHHHH
Q 030524 89 YDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKAGFNIKLCCHTL 166 (175)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v~~~f~~l 166 (175)
||++++++++.+..|...+..... .+.|+++++||.|+.+.+....++...+++.++ ++++++||++|.|++++|.++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i 159 (168)
T cd04177 80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL 159 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence 999999999999999998876543 679999999999998777777788888888888 799999999999999999999
Q ss_pred HHHHh
Q 030524 167 NSLIT 171 (175)
Q Consensus 167 ~~~~~ 171 (175)
...+.
T Consensus 160 ~~~~~ 164 (168)
T cd04177 160 VRQII 164 (168)
T ss_pred HHHHh
Confidence 87654
No 80
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=100.00 E-value=1.2e-33 Score=201.04 Aligned_cols=160 Identities=29% Similarity=0.460 Sum_probs=140.8
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (175)
+||+++|++|+|||||+++++.+.+...+.++.. ++....+.+++..+.+.+|||+|++.|..++..++.++|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999988877778775 666777788898999999999999999888888899999999999
Q ss_pred ECCChhhHHhHHHHHHHHHHh---------cCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHh-cCCeEEEeccCCCCCH
Q 030524 90 DVASRQSFLNTSKWIDEVRTE---------RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNI 159 (175)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~---------~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~v 159 (175)
|++++++|+.+..|+..+... ...++|+++++||+|+.+.+++..+++.+++.. .++.++++||++|.|+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 999999999999999988754 225799999999999976677788888777664 4689999999999999
Q ss_pred HHHHHHHHHHH
Q 030524 160 KLCCHTLNSLI 170 (175)
Q Consensus 160 ~~~f~~l~~~~ 170 (175)
+++|.+|.+.+
T Consensus 160 ~elf~~L~~~~ 170 (247)
T cd04143 160 DEMFRALFSLA 170 (247)
T ss_pred HHHHHHHHHHh
Confidence 99999998865
No 81
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=1.5e-33 Score=188.76 Aligned_cols=153 Identities=16% Similarity=0.320 Sum_probs=130.3
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (175)
+||+++|+.|+|||||+.+++.+.+...+.++. ..+ ...+.+++..+.+.+||++|++. ..++.++|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~-~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEG-GRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCc-cce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 589999999999999999999887766655443 233 46678888888999999999875 34678899999999
Q ss_pred ECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCC--CCCCCCHHHHHHHHHhc-CCeEEEeccCCCCCHHHHHHH
Q 030524 90 DVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLV--EKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKLCCHT 165 (175)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~v~~~f~~ 165 (175)
|++++++|+.+..|+..+..... ++.|+++++||.|+. ..+++...++++++++. +++|++|||++|.|++++|..
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999999987764 678999999999984 35677888888999876 589999999999999999999
Q ss_pred HHHH
Q 030524 166 LNSL 169 (175)
Q Consensus 166 l~~~ 169 (175)
+.+.
T Consensus 154 ~~~~ 157 (158)
T cd04103 154 AAQK 157 (158)
T ss_pred HHhh
Confidence 8865
No 82
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=100.00 E-value=3.5e-33 Score=187.53 Aligned_cols=159 Identities=43% Similarity=0.720 Sum_probs=142.5
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (175)
+||+++|++|+|||||++++....+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999998877777888887777777777888889999999999999999999999999999999
Q ss_pred ECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHH
Q 030524 90 DVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNS 168 (175)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~ 168 (175)
|++++.+++.+..|+..+..... .+.|+++++||+|+. .......+...++...+++++++|+++|.|++++|+++.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE-NREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc-ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence 99999999999999999887754 689999999999986 4455677888899999999999999999999999999887
Q ss_pred H
Q 030524 169 L 169 (175)
Q Consensus 169 ~ 169 (175)
.
T Consensus 160 ~ 160 (161)
T cd01863 160 K 160 (161)
T ss_pred h
Confidence 5
No 83
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=100.00 E-value=1.4e-33 Score=190.36 Aligned_cols=160 Identities=32% Similarity=0.498 Sum_probs=137.3
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccc-ccccccccccCCcEEEEEE
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-FRSLIPSYIRDSSVAVVVY 89 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d~~i~v~ 89 (175)
||+++|++|+|||||+++++.+.+...+.++.... +.....+++..+.+.+||+||++. +...+..+++++|++|+||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESL-YSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHh-ceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 68999999999999999999887776766666433 345567788888999999999885 3456778899999999999
Q ss_pred ECCChhhHHhHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCC-CCHHHHHHHH
Q 030524 90 DVASRQSFLNTSKWIDEVRTER--GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG-FNIKLCCHTL 166 (175)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~--~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~v~~~f~~l 166 (175)
|++++++|+.+..|+..+.... ..+.|+++|+||+|+.+.+.+...++..++...+++++++|+++| .|++++|..+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 9999999999999988887754 357999999999999777777888889999999999999999999 5999999999
Q ss_pred HHHHh
Q 030524 167 NSLIT 171 (175)
Q Consensus 167 ~~~~~ 171 (175)
.+.+.
T Consensus 160 ~~~~~ 164 (165)
T cd04146 160 CREVR 164 (165)
T ss_pred HHHHh
Confidence 88764
No 84
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=100.00 E-value=6.2e-33 Score=188.54 Aligned_cols=157 Identities=35% Similarity=0.533 Sum_probs=137.4
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (175)
+||+++|++|+|||||+.+++.+.+..++.++. .+.+...+.+++..+.+.+||+||++++...+..+++++|++|+||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 589999999999999999999988888777776 4666667788888889999999999999999999999999999999
Q ss_pred ECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHhcCC-eEEEeccCC
Q 030524 90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELNV-MFIETSAKA 155 (175)
Q Consensus 90 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s~~~ 155 (175)
|++++++|+.+. .|+..+.... ++.|+++++||.|+.+ .+.+...++..+++..++ +++++||++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999999999975 6887776543 5799999999999853 356677889999999987 999999999
Q ss_pred CCCHHHHHHHHHH
Q 030524 156 GFNIKLCCHTLNS 168 (175)
Q Consensus 156 ~~~v~~~f~~l~~ 168 (175)
|.|++++|+.+.-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998754
No 85
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.2e-32 Score=186.34 Aligned_cols=164 Identities=38% Similarity=0.643 Sum_probs=145.7
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
...++|+++|++|+|||||++++..+.+.+.+.++.+.+.....+..++..+.+.+||++|++.+...+..++.++|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 34599999999999999999999988777777788777777777888888889999999999999999899999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l 166 (175)
+|||++++.+++.+..|+..+......++|+++++||+|+.+.++......+.+.....++++++|+++|.|++++|+++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i 164 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDL 164 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHH
Confidence 99999999999999999998877766689999999999997777777777777887778899999999999999999999
Q ss_pred HHHH
Q 030524 167 NSLI 170 (175)
Q Consensus 167 ~~~~ 170 (175)
.+.+
T Consensus 165 ~~~~ 168 (169)
T cd04114 165 ACRL 168 (169)
T ss_pred HHHh
Confidence 8764
No 86
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=100.00 E-value=7.4e-33 Score=188.21 Aligned_cols=160 Identities=28% Similarity=0.476 Sum_probs=138.0
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (175)
+||+++|++|+|||||+++++.+.+...+.++.. +.+...+.+++..+.+.+||++|++.+...+..++.++|++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999999888777777664 444556778888889999999999999999999999999999999
Q ss_pred ECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHhcCC-eEEEeccCC
Q 030524 90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETSAKA 155 (175)
Q Consensus 90 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~~ 155 (175)
|++++.+|+.+. .|+..+... .++.|+++++||+|+.+. ..+..+++..+++..++ ++++|||++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 999999999986 577766654 578999999999998543 35667888899999997 899999999
Q ss_pred CCCHHHHHHHHHHHHh
Q 030524 156 GFNIKLCCHTLNSLIT 171 (175)
Q Consensus 156 ~~~v~~~f~~l~~~~~ 171 (175)
|.|++++|+.+++.++
T Consensus 159 ~~gi~~~f~~~~~~~~ 174 (174)
T cd04135 159 QKGLKTVFDEAILAIL 174 (174)
T ss_pred CCCHHHHHHHHHHHhC
Confidence 9999999999988763
No 87
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=2.9e-33 Score=189.46 Aligned_cols=162 Identities=21% Similarity=0.243 Sum_probs=140.3
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
+.+||+++|.+|+|||||+++++++.+. .++.++.+.++....+..++..+.+.+||++|++.+..++..++.++|+++
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l 82 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC 82 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence 5689999999999999999999999888 888898887777777778888888999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC-eEEEeccCCCCCHHHHHHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKLCCHT 165 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~f~~ 165 (175)
+|||++++.+++.+..|+..+... .++|+++|+||+|+.+..+....+...+++.+++ .++++||++|+|+.++|..
T Consensus 83 lv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~ 160 (169)
T cd01892 83 LVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTK 160 (169)
T ss_pred EEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHH
Confidence 999999999999998888765322 4799999999999865554444456677788887 4699999999999999999
Q ss_pred HHHHHh
Q 030524 166 LNSLIT 171 (175)
Q Consensus 166 l~~~~~ 171 (175)
+.+.+.
T Consensus 161 l~~~~~ 166 (169)
T cd01892 161 LATAAQ 166 (169)
T ss_pred HHHHhh
Confidence 998775
No 88
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=100.00 E-value=6.5e-33 Score=185.17 Aligned_cols=159 Identities=48% Similarity=0.836 Sum_probs=146.1
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (175)
+||+++|++|+|||||++++.+..+...+.++.+.++.......++....+.+||+||+..+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888888888888888888888889999999999999999999999999999999
Q ss_pred ECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHH
Q 030524 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNS 168 (175)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~ 168 (175)
|++++++++.+..|+..+......+.|+++++||+|+..+......+.+.++...+++++++|++++.|++++|++|.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~ 159 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLAE 159 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHhC
Confidence 9999999999999999998887678999999999998756777788888999988999999999999999999999863
No 89
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=100.00 E-value=8.7e-33 Score=194.30 Aligned_cols=160 Identities=33% Similarity=0.460 Sum_probs=138.4
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCccccccccccccc-CCcEEEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR-DSSVAVV 87 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~-~~d~~i~ 87 (175)
+||+++|++|+|||||+++++.+.+. ..+.++.+.++....+.+++....+.+||++|++ ......++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999999887765 6666666556777778888888999999999987 233345566 8999999
Q ss_pred EEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524 88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166 (175)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l 166 (175)
|||++++.+|+.+..|+..+..... .++|+++|+||+|+.+.+.+..++..+++...+++++++||++|.|++++|+++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999998877643 679999999999998777778888888999899999999999999999999999
Q ss_pred HHHHh
Q 030524 167 NSLIT 171 (175)
Q Consensus 167 ~~~~~ 171 (175)
.+.+.
T Consensus 159 ~~~~~ 163 (221)
T cd04148 159 VRQIR 163 (221)
T ss_pred HHHHH
Confidence 98775
No 90
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.9e-35 Score=187.47 Aligned_cols=167 Identities=38% Similarity=0.625 Sum_probs=153.4
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEE---------CCeEEEEEEEeCCCccccccccccc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL---------EDRTVRLQLWDTAGQERFRSLIPSY 78 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~i~D~~G~~~~~~~~~~~ 78 (175)
.-+|.+.+|++|+||||++.++..+++......+.++++..+.+.. .+..+.+++|||+|+++|+++...+
T Consensus 8 ylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAF 87 (219)
T KOG0081|consen 8 YLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAF 87 (219)
T ss_pred HHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHH
Confidence 3478889999999999999999999999999999999999887754 3456789999999999999999999
Q ss_pred ccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCC
Q 030524 79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF 157 (175)
Q Consensus 79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 157 (175)
++.+=+++++||+++..||-+++.|+.++..+.- .+.-+++++||+|+.+.+.+..+++..++.++++||+++||-+|.
T Consensus 88 fRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~ 167 (219)
T KOG0081|consen 88 FRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGT 167 (219)
T ss_pred HHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCc
Confidence 9999999999999999999999999999988765 456689999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhhh
Q 030524 158 NIKLCCHTLNSLITVCI 174 (175)
Q Consensus 158 ~v~~~f~~l~~~~~~~~ 174 (175)
++++..+.|+..+|..+
T Consensus 168 Nv~kave~LldlvM~Ri 184 (219)
T KOG0081|consen 168 NVEKAVELLLDLVMKRI 184 (219)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999988887653
No 91
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=100.00 E-value=2.9e-32 Score=183.40 Aligned_cols=162 Identities=34% Similarity=0.550 Sum_probs=142.5
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (175)
+||+++|++|+|||||+++++...+...+.++.. +.+......++..+.+.+||+||+..+...+..+++.+|++++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcch-hhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 5899999999999999999999887777777665 444556677888889999999999999999999999999999999
Q ss_pred ECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHH
Q 030524 90 DVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNS 168 (175)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~ 168 (175)
|++++.++..+..|+..+..... .++|+++++||+|+.........+...++.+++++++++|+++|.|+.++|+++.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 99999999999999999888743 57999999999998765566777788888889999999999999999999999988
Q ss_pred HHhh
Q 030524 169 LITV 172 (175)
Q Consensus 169 ~~~~ 172 (175)
.+..
T Consensus 160 ~~~~ 163 (164)
T cd04139 160 EIRQ 163 (164)
T ss_pred HHHh
Confidence 7754
No 92
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=100.00 E-value=1.4e-31 Score=182.06 Aligned_cols=159 Identities=32% Similarity=0.515 Sum_probs=134.4
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (175)
.||+++|++|||||||+++++++.+...+.++....+ ...+.+++..+.+.+|||+|++.+...+..++.++|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 6899999999999999999999888877777776443 345667888889999999999999998888999999999999
Q ss_pred ECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHhcCC-eEEEeccCC
Q 030524 90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETSAKA 155 (175)
Q Consensus 90 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~~ 155 (175)
|++++++|+.+. .|+..+.... .+.|+++++||+|+.+. ..+...+.+.++...+. ++++|||++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999985 4777666543 57999999999998542 23456777888888875 899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 030524 156 GFNIKLCCHTLNSLI 170 (175)
Q Consensus 156 ~~~v~~~f~~l~~~~ 170 (175)
|.|++++|.++.+.+
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998764
No 93
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=100.00 E-value=8e-32 Score=180.48 Aligned_cols=159 Identities=40% Similarity=0.575 Sum_probs=141.6
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEE
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (175)
||+++|++|||||||++++++......+.++.. +........++..+.+.+||+||++.+...+..+++.+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998877777777665 5566666777777899999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHH
Q 030524 91 VASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSL 169 (175)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~ 169 (175)
++++++++.+..|+..+..... .+.|+++++||+|+.+......+++..++..++++++++|++++.|+.++|++|.+.
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 9999999999999998887765 689999999999998767778888999999999999999999999999999999875
Q ss_pred H
Q 030524 170 I 170 (175)
Q Consensus 170 ~ 170 (175)
+
T Consensus 160 i 160 (160)
T cd00876 160 I 160 (160)
T ss_pred C
Confidence 3
No 94
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-32 Score=172.48 Aligned_cols=168 Identities=35% Similarity=0.618 Sum_probs=157.6
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
..-+|-+++|+-|+|||+|++++...++..+-..+.++++....+.+.+..+++++||++|+++|+...+.|++.+-+.+
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal 88 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 88 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence 34588999999999999999999999988888889999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l 166 (175)
+|||++.+.++..+..|+..-+....++.-+++++||.|+...+.+..+++++|+.+.|+.|+++|+++|+++++.|-..
T Consensus 89 mvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafle~ 168 (215)
T KOG0097|consen 89 MVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLET 168 (215)
T ss_pred EEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHH
Confidence 99999999999999999998888777888899999999999999999999999999999999999999999999999988
Q ss_pred HHHHhhhh
Q 030524 167 NSLITVCI 174 (175)
Q Consensus 167 ~~~~~~~~ 174 (175)
.+.+..++
T Consensus 169 akkiyqni 176 (215)
T KOG0097|consen 169 AKKIYQNI 176 (215)
T ss_pred HHHHHHhh
Confidence 88776654
No 95
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=4.4e-32 Score=186.25 Aligned_cols=164 Identities=37% Similarity=0.582 Sum_probs=154.0
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (175)
..+||+++|.+|+|||+|..+++.+.+...|.++.. +.+.+...+++..+.+.|+||+|++++..+...++.++|++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 468999999999999999999999999999999998 8888999999999999999999999999999999999999999
Q ss_pred EEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524 88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166 (175)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l 166 (175)
||+++++.||+.+..+++.+....+ ..+|+++|+||+|+.+.+.+..++++.++..++|+|+++||+.+.+++++|..|
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 9999999999999999999955544 678999999999999889999999999999999999999999999999999999
Q ss_pred HHHHhh
Q 030524 167 NSLITV 172 (175)
Q Consensus 167 ~~~~~~ 172 (175)
.+.+-.
T Consensus 161 ~r~~~~ 166 (196)
T KOG0395|consen 161 VREIRL 166 (196)
T ss_pred HHHHHh
Confidence 887654
No 96
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=4.1e-31 Score=185.43 Aligned_cols=169 Identities=30% Similarity=0.555 Sum_probs=148.8
Q ss_pred CCCCCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 030524 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 80 (175)
Q Consensus 1 ~~~~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 80 (175)
|.++.....+||+++|++|||||||+++++.+.+...+.++.+.++.......++..+.+.+||++|++++...+..++.
T Consensus 1 ~~~~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~ 80 (215)
T PTZ00132 1 MQQMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYI 80 (215)
T ss_pred CccccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhc
Confidence 66788888999999999999999999999888888888999998888888878888999999999999999999999999
Q ss_pred CCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHH
Q 030524 81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160 (175)
Q Consensus 81 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~ 160 (175)
+++++++|||++++.+|..+..|+..+.... .++|+++++||+|+.+. ... .+...++...++.++++|+++|.|++
T Consensus 81 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~ 157 (215)
T PTZ00132 81 KGQCAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKDR-QVK-ARQITFHRKKNLQYYDISAKSNYNFE 157 (215)
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCccc-cCC-HHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 9999999999999999999999999988665 57999999999998543 222 23346777788999999999999999
Q ss_pred HHHHHHHHHHhh
Q 030524 161 LCCHTLNSLITV 172 (175)
Q Consensus 161 ~~f~~l~~~~~~ 172 (175)
+.|.+|.+.+..
T Consensus 158 ~~f~~ia~~l~~ 169 (215)
T PTZ00132 158 KPFLWLARRLTN 169 (215)
T ss_pred HHHHHHHHHHhh
Confidence 999999988764
No 97
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=100.00 E-value=7.9e-33 Score=186.43 Aligned_cols=153 Identities=20% Similarity=0.255 Sum_probs=127.5
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEE
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (175)
.|+++|++|+|||||++++++..+...+.++.+.+. ..++...+.+.+||++|++++..++..+++++|++|+|||
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 379999999999999999999877777788877543 2234556789999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCH----HHHHHHHHhcCCeEEEeccCC------CCCHH
Q 030524 91 VASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI----EEGEAKSRELNVMFIETSAKA------GFNIK 160 (175)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~----~~~~~~~~~~~~~~~~~s~~~------~~~v~ 160 (175)
.+++.++...+.|+..+.... +++|+++++||.|+...+.... .++..++++.++.++++||++ ++||+
T Consensus 77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~ 155 (164)
T cd04162 77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence 999999999999988886544 6899999999999865543321 234566677788999999988 99999
Q ss_pred HHHHHHHH
Q 030524 161 LCCHTLNS 168 (175)
Q Consensus 161 ~~f~~l~~ 168 (175)
++|+.++.
T Consensus 156 ~~~~~~~~ 163 (164)
T cd04162 156 DLLSQLIN 163 (164)
T ss_pred HHHHHHhc
Confidence 99998763
No 98
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=100.00 E-value=7e-32 Score=182.47 Aligned_cols=155 Identities=23% Similarity=0.354 Sum_probs=124.7
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
...++|+++|++|+|||||++++..+.+. .+.++.+.+.. .+.. ..+.+.+||++|++++...+..++.++|++|
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii 81 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 81 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 45689999999999999999999876654 45666665543 2222 4578999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----hcCCeEEEeccCCCCCHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNIK 160 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~ 160 (175)
+|||++++.++++...|+..+.... ..+.|+++++||+|+.+ ....++++++.. ...+.++++||++|.|+.
T Consensus 82 ~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~ 159 (168)
T cd04149 82 FVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 159 (168)
T ss_pred EEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence 9999999999999988887776543 25789999999999854 345556665542 223578999999999999
Q ss_pred HHHHHHHH
Q 030524 161 LCCHTLNS 168 (175)
Q Consensus 161 ~~f~~l~~ 168 (175)
++|++|.+
T Consensus 160 ~~~~~l~~ 167 (168)
T cd04149 160 EGLTWLSS 167 (168)
T ss_pred HHHHHHhc
Confidence 99999864
No 99
>PLN00223 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=1.4e-31 Score=182.92 Aligned_cols=160 Identities=21% Similarity=0.312 Sum_probs=125.5
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
.+.+||+++|++|||||||++++..+.+. .+.++.+.+.. .+.. ..+.+.+||+||++++..+|..+++++|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 45689999999999999999999876654 45677765543 2233 3478999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhc-----CCeEEEeccCCCCCHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-----NVMFIETSAKAGFNIK 160 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~v~ 160 (175)
+|||+++++++++...++..+.... .++.|+++++||+|+.+.. ..++......-. .+.++++||++|+|+.
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~ 167 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence 9999999999999888887775432 2579999999999986433 333333332211 1245689999999999
Q ss_pred HHHHHHHHHHhhh
Q 030524 161 LCCHTLNSLITVC 173 (175)
Q Consensus 161 ~~f~~l~~~~~~~ 173 (175)
++|++|.+.+..+
T Consensus 168 e~~~~l~~~~~~~ 180 (181)
T PLN00223 168 EGLDWLSNNIANK 180 (181)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988764
No 100
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=100.00 E-value=2.9e-32 Score=185.49 Aligned_cols=157 Identities=22% Similarity=0.321 Sum_probs=124.0
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
...+||+++|++|+|||||++++..+.+. .+.++.+.++... .. ..+.+.+||++|++++...+..+++++|++|
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~~--~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii 85 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVETV--TY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLI 85 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEEE--EE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence 34699999999999999999999876653 4567776655432 23 3478999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HhcCCeEEEeccCCCCCHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIK 160 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~ 160 (175)
+|||++++++++....|+..+.... .++.|+++++||+|+.+.. ...+..+.. +...+.++++||++|.|+.
T Consensus 86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 163 (175)
T smart00177 86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY 163 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence 9999999999999998888876543 2579999999999986432 233332222 1223457789999999999
Q ss_pred HHHHHHHHHH
Q 030524 161 LCCHTLNSLI 170 (175)
Q Consensus 161 ~~f~~l~~~~ 170 (175)
++|++|.+.+
T Consensus 164 e~~~~l~~~~ 173 (175)
T smart00177 164 EGLTWLSNNL 173 (175)
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 101
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=100.00 E-value=4.3e-31 Score=180.53 Aligned_cols=163 Identities=35% Similarity=0.477 Sum_probs=140.6
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (175)
.||+++|++|+|||||++++....+...+.++....+ ......++..+.+.+||+||++++...+..++..+|+++++|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 6899999999999999999998877666666664333 455567777888999999999999999999999999999999
Q ss_pred ECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHH
Q 030524 90 DVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNS 168 (175)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~ 168 (175)
|++++++++.+..|+..+..... .+.|+++++||+|+...+.....+...++..++++++++|++++.|+.++|.++.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999888887654 57899999999998766666666778888888899999999999999999999998
Q ss_pred HHhhh
Q 030524 169 LITVC 173 (175)
Q Consensus 169 ~~~~~ 173 (175)
.+...
T Consensus 161 ~~~~~ 165 (180)
T cd04137 161 EIEKV 165 (180)
T ss_pred HHHHh
Confidence 87643
No 102
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=4.6e-31 Score=182.96 Aligned_cols=161 Identities=32% Similarity=0.489 Sum_probs=135.2
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEE
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (175)
||+++|++|+|||||+++++.+.+...+.++.. +.....+.+++..+.+.+||++|+..+..++..++.++|++|+|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999887776666654 4555667778888899999999999999888999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCC-CCCCCHHHHHHHHH-hcCCeEEEeccCCCCCHHHHHHHHH
Q 030524 91 VASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVE-KRQVSIEEGEAKSR-ELNVMFIETSAKAGFNIKLCCHTLN 167 (175)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~v~~~f~~l~ 167 (175)
++++.+++.+..|+..+..... .++|+++++||+|+.+ ..........+.+. ..+++++++|+++|.|+.++|+++.
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999988887755 5799999999999865 34444444444443 4567899999999999999999999
Q ss_pred HHHhh
Q 030524 168 SLITV 172 (175)
Q Consensus 168 ~~~~~ 172 (175)
+.+..
T Consensus 160 ~~~~~ 164 (198)
T cd04147 160 RQANL 164 (198)
T ss_pred HHhhc
Confidence 87653
No 103
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=100.00 E-value=2.4e-31 Score=180.11 Aligned_cols=156 Identities=22% Similarity=0.376 Sum_probs=127.5
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEE
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (175)
||+++|++|||||||++++.+..+. .+.+|.+.++. .+.. ..+.+.+||+||++++...+..++.++|++++|+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 6899999999999999999987654 35667665553 2223 45789999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcC------CeEEEeccCCCCCHHHHH
Q 030524 91 VASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN------VMFIETSAKAGFNIKLCC 163 (175)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~------~~~~~~s~~~~~~v~~~f 163 (175)
++++++++++..|+..+..... .+.|+++++||+|+.+ .....+.++++...+ +.++++||++|.|+.++|
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence 9999999999999988876533 5689999999999853 356666666654322 368899999999999999
Q ss_pred HHHHHHHhhh
Q 030524 164 HTLNSLITVC 173 (175)
Q Consensus 164 ~~l~~~~~~~ 173 (175)
++|.+.+...
T Consensus 154 ~~l~~~~~~~ 163 (169)
T cd04158 154 DWLSRQLVAA 163 (169)
T ss_pred HHHHHHHhhc
Confidence 9999887654
No 104
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=100.00 E-value=7.4e-31 Score=177.78 Aligned_cols=157 Identities=35% Similarity=0.550 Sum_probs=133.1
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (175)
+||+++|++|+|||||+++|++......+.++.. +........++..+.+.+||+||++++......+++++|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 5899999999999999999999987666666664 445556677888889999999999998888888899999999999
Q ss_pred ECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CCCHHHHHHHHHhcCC-eEEEeccCCC
Q 030524 90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKR-----------QVSIEEGEAKSRELNV-MFIETSAKAG 156 (175)
Q Consensus 90 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~s~~~~ 156 (175)
|++++.++.... .|+..+.... .+.|+++++||+|+.+.. .+...+..+++..+++ +++++|+++|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 999999998865 4666666544 489999999999986554 2356778888888888 9999999999
Q ss_pred CCHHHHHHHHHH
Q 030524 157 FNIKLCCHTLNS 168 (175)
Q Consensus 157 ~~v~~~f~~l~~ 168 (175)
.|+.++|+++.+
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999999875
No 105
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=100.00 E-value=1.9e-31 Score=182.76 Aligned_cols=162 Identities=24% Similarity=0.348 Sum_probs=130.1
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEE-CCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
..+||+++|++|||||||+++++.+.+... .++.+.+.....+.. ++..+.+.+||++|++++..++..++.++|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 468999999999999999999998776543 566666655555544 446788999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHH------hcCCeEEEeccCCCCCH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSR------ELNVMFIETSAKAGFNI 159 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~------~~~~~~~~~s~~~~~~v 159 (175)
+|+|++++.+++....|+..+..... .+.|+++++||+|+.+ ....++...++. ..+++++++||++|+|+
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 158 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN--ALSVSEVEKLLALHELSASTPWHVQPACAIIGEGL 158 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc--cCCHHHHHHHhCccccCCCCceEEEEeecccCCCH
Confidence 99999999999998888887776543 5799999999999853 233444444432 12356899999999999
Q ss_pred HHHHHHHHHHHhh
Q 030524 160 KLCCHTLNSLITV 172 (175)
Q Consensus 160 ~~~f~~l~~~~~~ 172 (175)
+++|++|.+.+..
T Consensus 159 ~~l~~~l~~~l~~ 171 (183)
T cd04152 159 QEGLEKLYEMILK 171 (183)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
No 106
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.98 E-value=2.2e-30 Score=178.02 Aligned_cols=162 Identities=31% Similarity=0.535 Sum_probs=135.3
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (175)
+.||+++|++|+|||||++++..+.+...+.++.. +.+......++..+.+.+||++|++.+......++.++|+++++
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv 79 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVF-ENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIG 79 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCccc-ceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEE
Confidence 36899999999999999999998777666666554 33344566778788899999999998887777788999999999
Q ss_pred EECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCC----------CCCCCHHHHHHHHHhcCC-eEEEeccCCC
Q 030524 89 YDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVE----------KRQVSIEEGEAKSRELNV-MFIETSAKAG 156 (175)
Q Consensus 89 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~s~~~~ 156 (175)
||++++++|+.+. .|+..+.... ++.|+++|+||+|+.+ .+.+..++...++++.++ ++++|||++|
T Consensus 80 ~~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 158 (187)
T cd04129 80 FAVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTG 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence 9999999999986 5888887654 4799999999999854 344556788889999985 8999999999
Q ss_pred CCHHHHHHHHHHHHhh
Q 030524 157 FNIKLCCHTLNSLITV 172 (175)
Q Consensus 157 ~~v~~~f~~l~~~~~~ 172 (175)
.|++++|.++.+.+..
T Consensus 159 ~~v~~~f~~l~~~~~~ 174 (187)
T cd04129 159 EGVDDVFEAATRAALL 174 (187)
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999877653
No 107
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.98 E-value=8.6e-32 Score=180.53 Aligned_cols=152 Identities=22% Similarity=0.366 Sum_probs=118.9
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (175)
+||+++|.+|||||||++++..+.+. .+.++.+.+... +.. ..+.+.+||++|++++...+..+++++|++|+||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~~--~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceEE--EEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 48999999999999999999877665 456776655432 222 4578999999999999999999999999999999
Q ss_pred ECCChhhHHhHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCHHHH-HHHH----HhcCCeEEEeccCCCCCHHHHH
Q 030524 90 DVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEG-EAKS----RELNVMFIETSAKAGFNIKLCC 163 (175)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nk~D~~~~~~~~~~~~-~~~~----~~~~~~~~~~s~~~~~~v~~~f 163 (175)
|++++.+++....|+..+.... ....|+++++||+|+.+. ....+. +.+. ...++.++++||++|.|++++|
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence 9999999999988887776432 256899999999998542 222232 2221 1234467899999999999999
Q ss_pred HHHHH
Q 030524 164 HTLNS 168 (175)
Q Consensus 164 ~~l~~ 168 (175)
++|.+
T Consensus 154 ~~l~~ 158 (159)
T cd04150 154 DWLSN 158 (159)
T ss_pred HHHhc
Confidence 99864
No 108
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.98 E-value=1.2e-30 Score=178.62 Aligned_cols=160 Identities=21% Similarity=0.337 Sum_probs=124.5
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
...+||+++|++|||||||++++..+.+.. +.+|.+.++. .+.. ..+.+.+||++|++++...+..++.++|++|
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI 89 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLI 89 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 456999999999999999999998776543 5667665543 2223 4478999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HhcCCeEEEeccCCCCCHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIK 160 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~ 160 (175)
+|+|+++++++.....++..+.... ..+.|+++++||.|+.+. ....+..... ....+.++++||++|.|++
T Consensus 90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~ 167 (182)
T PTZ00133 90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA--MSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY 167 (182)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--CCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence 9999999999999888877775432 256899999999998542 2223322221 1122457799999999999
Q ss_pred HHHHHHHHHHhhh
Q 030524 161 LCCHTLNSLITVC 173 (175)
Q Consensus 161 ~~f~~l~~~~~~~ 173 (175)
++|++|.+.+..+
T Consensus 168 e~~~~l~~~i~~~ 180 (182)
T PTZ00133 168 EGLDWLSANIKKS 180 (182)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887654
No 109
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.98 E-value=6.9e-31 Score=178.47 Aligned_cols=155 Identities=23% Similarity=0.339 Sum_probs=124.3
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
...++|+++|++|+|||||++++.+... ..+.++.+... ..+..+ .+.+.+||+||++.+..++..++.++|+++
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~--~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 86 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQI--KTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALI 86 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 4568999999999999999999998743 34555555333 333344 367999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----hcCCeEEEeccCCCCCHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNIK 160 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~ 160 (175)
+|||++++.++.....|+..+.... ..+.|+++++||+|+.+.. ..++...+.. ..+++++++||++|.|++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 164 (173)
T cd04154 87 WVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEGLL 164 (173)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcCHH
Confidence 9999999999999888888876542 2689999999999986532 4455555543 345789999999999999
Q ss_pred HHHHHHHH
Q 030524 161 LCCHTLNS 168 (175)
Q Consensus 161 ~~f~~l~~ 168 (175)
++|+++.+
T Consensus 165 ~l~~~l~~ 172 (173)
T cd04154 165 QGIDWLVD 172 (173)
T ss_pred HHHHHHhc
Confidence 99999864
No 110
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.98 E-value=1.5e-30 Score=179.89 Aligned_cols=149 Identities=21% Similarity=0.336 Sum_probs=127.3
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEEC-----CeEEEEEEEeCCCcccccccccccccCCcE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-----DRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (175)
+||+++|+.|+|||||+++++.+.+...+.+|.+.++..+.+..+ +..+.+.+||++|+++|..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999888888888877776666653 467899999999999999999999999999
Q ss_pred EEEEEECCChhhHHhHHHHHHHHHHhc-------------------CCCCcEEEEEeCCCCCCCCCCCHH----HHHHHH
Q 030524 85 AVVVYDVASRQSFLNTSKWIDEVRTER-------------------GSDVIIVLVGNKTDLVEKRQVSIE----EGEAKS 141 (175)
Q Consensus 85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~iiv~nk~D~~~~~~~~~~----~~~~~~ 141 (175)
+|+|||++++++|+.+..|+.++.... +.++|+++|+||.|+.+++..... ....++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999999999997642 247999999999999766544433 345678
Q ss_pred HhcCCeEEEeccCCCCC
Q 030524 142 RELNVMFIETSAKAGFN 158 (175)
Q Consensus 142 ~~~~~~~~~~s~~~~~~ 158 (175)
++.+++.++.++.++..
T Consensus 161 ~~~~~~~i~~~c~~~~~ 177 (202)
T cd04102 161 EQGNAEEINLNCTNGRL 177 (202)
T ss_pred HhcCCceEEEecCCccc
Confidence 88999999999887553
No 111
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=5.6e-30 Score=172.89 Aligned_cols=159 Identities=25% Similarity=0.346 Sum_probs=123.6
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (175)
+||+++|++|+|||||++++..+.+...+..+. .........++..+.+.+||+||++.+...+..++..+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL--PEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc--cceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 489999999999999999999988765543322 222333445667789999999999888888888889999999999
Q ss_pred ECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC--CHHHHHHHHHhcC--CeEEEeccCCCCCHHHHHH
Q 030524 90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEGEAKSRELN--VMFIETSAKAGFNIKLCCH 164 (175)
Q Consensus 90 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~s~~~~~~v~~~f~ 164 (175)
|++++.+++.+. .|+..+.... .+.|+++++||+|+.+.... ...+....+..++ .+++++||++|.|++++|+
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 999999999975 5777676554 58999999999998654432 1233333344333 3899999999999999999
Q ss_pred HHHHHHh
Q 030524 165 TLNSLIT 171 (175)
Q Consensus 165 ~l~~~~~ 171 (175)
.+.+.+.
T Consensus 158 ~~~~~~~ 164 (166)
T cd01893 158 YAQKAVL 164 (166)
T ss_pred HHHHHhc
Confidence 9887664
No 112
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.97 E-value=2.8e-30 Score=174.55 Aligned_cols=153 Identities=19% Similarity=0.194 Sum_probs=120.9
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEE
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (175)
+|+++|++|||||||++++.++ +...+.++.+... ..+.. ..+.+.+||+||+++++.++..++.++|++|+|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 5899999999999999999977 5566677776543 23333 34679999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHH----HHHHHHHhc--CCeEEEeccCCC------C
Q 030524 91 VASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIE----EGEAKSREL--NVMFIETSAKAG------F 157 (175)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~----~~~~~~~~~--~~~~~~~s~~~~------~ 157 (175)
++++.+++++..|+..+..... .++|+++++||.|+.+.+..... ....++.+. .+.+++|||++| .
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~ 155 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP 155 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence 9999999999999998876543 57999999999998654321111 112233223 357888999998 8
Q ss_pred CHHHHHHHHHH
Q 030524 158 NIKLCCHTLNS 168 (175)
Q Consensus 158 ~v~~~f~~l~~ 168 (175)
|+.+.|+||.+
T Consensus 156 g~~~~~~wl~~ 166 (167)
T cd04161 156 SIVEGLRWLLA 166 (167)
T ss_pred CHHHHHHHHhc
Confidence 99999999975
No 113
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.97 E-value=1.4e-30 Score=175.51 Aligned_cols=164 Identities=32% Similarity=0.496 Sum_probs=149.3
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEEC-CeEEEEEEEeCCCcccccccccccccCCcEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (175)
...+|+++||+..+|||+|+..+..+.++.+|.||.- +.+...+.++ +..+.+.+|||+|+++|..++...++++|++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 3568999999999999999999999999999999995 8888899995 9999999999999999999888899999999
Q ss_pred EEEEECCChhhHHhH-HHHHHHHHHhcCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHhcCC-eEEEe
Q 030524 86 VVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELNV-MFIET 151 (175)
Q Consensus 86 i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nk~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~ 151 (175)
+++|++.++++|+++ .+|+.++..++ +++|+++||+|.|+.+ ...+..+++..++++.|+ .|++|
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec 159 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC 159 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence 999999999999995 67999999887 7999999999999963 246778899999999995 99999
Q ss_pred ccCCCCCHHHHHHHHHHHHhh
Q 030524 152 SAKAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 152 s~~~~~~v~~~f~~l~~~~~~ 172 (175)
||++..|++++|+.....+..
T Consensus 160 Sa~tq~~v~~vF~~a~~~~l~ 180 (198)
T KOG0393|consen 160 SALTQKGVKEVFDEAIRAALR 180 (198)
T ss_pred hhhhhCCcHHHHHHHHHHHhc
Confidence 999999999999987777654
No 114
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.97 E-value=1.3e-29 Score=172.36 Aligned_cols=154 Identities=21% Similarity=0.363 Sum_probs=121.7
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (175)
..++|+++|++|+|||||+++++.+.+.. ..++.+.++. ....+ ...+.+||+||++.+...+..+++++|++++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 46899999999999999999999877654 4555554433 22233 4689999999999999999999999999999
Q ss_pred EEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HhcCCeEEEeccCCCCCHHH
Q 030524 88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIKL 161 (175)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~ 161 (175)
|+|+++++++.....++..+..... .+.|+++++||+|+.+ ....++..+.. ...+++++++||++|+|+++
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~--~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e 166 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG--AMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE 166 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC--CCCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence 9999999999988888887765543 5799999999999854 22333332222 23456899999999999999
Q ss_pred HHHHHHH
Q 030524 162 CCHTLNS 168 (175)
Q Consensus 162 ~f~~l~~ 168 (175)
+|++|.+
T Consensus 167 ~~~~l~~ 173 (174)
T cd04153 167 GLDWIAS 173 (174)
T ss_pred HHHHHhc
Confidence 9999865
No 115
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.97 E-value=4.8e-30 Score=172.35 Aligned_cols=152 Identities=18% Similarity=0.259 Sum_probs=118.7
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCC-CCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (175)
+|+++|++|||||||++++..... ...+.++.+.+... .. ...+.+.+||+||++++...+..+++++|++|+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES--FE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE--EE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998753 45566776644322 22 23568999999999999999999999999999999
Q ss_pred ECCChhhHHhHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----hcCCeEEEeccCCCCCHHH
Q 030524 90 DVASRQSFLNTSKWIDEVRTER---GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNIKL 161 (175)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~---~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~~ 161 (175)
|++++.++.....|+..+.... ..++|+++++||+|+.+.. ...+...... ...++++++||++|.|+++
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence 9999999998888888876542 2579999999999986432 2222222211 1234689999999999999
Q ss_pred HHHHHHH
Q 030524 162 CCHTLNS 168 (175)
Q Consensus 162 ~f~~l~~ 168 (175)
+|++|.+
T Consensus 155 ~~~~l~~ 161 (162)
T cd04157 155 GVQWLQA 161 (162)
T ss_pred HHHHHhc
Confidence 9999864
No 116
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.97 E-value=2.2e-29 Score=173.49 Aligned_cols=157 Identities=20% Similarity=0.289 Sum_probs=126.3
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
.++.+|+++|++|||||||++++.++.+. .+.++.+... ..+..++ ..+.+||+||++.+...+..+++++|+++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~ii 91 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIV 91 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 45799999999999999999999987653 4555554432 3344444 57899999999999889999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHh----------------cCCeEE
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE----------------LNVMFI 149 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~----------------~~~~~~ 149 (175)
+|+|++++++++....|+..+..... .+.|+++++||+|+.+ .....+.+..+.. ..+.++
T Consensus 92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (190)
T cd00879 92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF 169 (190)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence 99999999999988888888876443 5799999999999853 4455666665543 224789
Q ss_pred EeccCCCCCHHHHHHHHHHHH
Q 030524 150 ETSAKAGFNIKLCCHTLNSLI 170 (175)
Q Consensus 150 ~~s~~~~~~v~~~f~~l~~~~ 170 (175)
+|||++|+|+.++|.+|.+.+
T Consensus 170 ~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 170 MCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred EeEecCCCChHHHHHHHHhhC
Confidence 999999999999999998753
No 117
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.97 E-value=7e-32 Score=176.25 Aligned_cols=167 Identities=35% Similarity=0.547 Sum_probs=158.3
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
...+|++++|..++||||+++++|.+-+..++..+.++++....+.+.+..+...+||++|+++|......|++++.+.+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v 97 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV 97 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence 35799999999999999999999999999999999999999998888888888899999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l 166 (175)
+||+.+|+.||+.+..|++.+.... .++|.++|-||+|+.++.+....+.+-+++.+.+.++.+|++...|+..+|.+|
T Consensus 98 LVFSTTDr~SFea~~~w~~kv~~e~-~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YL 176 (246)
T KOG4252|consen 98 LVFSTTDRYSFEATLEWYNKVQKET-ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYL 176 (246)
T ss_pred EEEecccHHHHHHHHHHHHHHHHHh-ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHH
Confidence 9999999999999999999999887 489999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhh
Q 030524 167 NSLITVCI 174 (175)
Q Consensus 167 ~~~~~~~~ 174 (175)
++++....
T Consensus 177 aeK~~q~~ 184 (246)
T KOG4252|consen 177 AEKLTQQK 184 (246)
T ss_pred HHHHHHHH
Confidence 99887653
No 118
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.97 E-value=4.9e-29 Score=169.49 Aligned_cols=157 Identities=25% Similarity=0.363 Sum_probs=127.8
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
.+..+|+++|+.||||||+++++..+... ...||.+.+... +..++ ..+.+||.+|+..++..|+.|+.++|++|
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~~~--i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI 86 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNIEE--IKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII 86 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEEEE--EEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccccce--eeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence 67899999999999999999999876433 356666655443 34444 56899999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHH------hcCCeEEEeccCCCCCH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSR------ELNVMFIETSAKAGFNI 159 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~------~~~~~~~~~s~~~~~~v 159 (175)
||+|.++++.+.+....+..+..... .++|+++++||+|+.+ .....+...... ...+.++.||+.+|+|+
T Consensus 87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~--~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv 164 (175)
T PF00025_consen 87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD--AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGV 164 (175)
T ss_dssp EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT--SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTH
T ss_pred EEEecccceeecccccchhhhcchhhcccceEEEEeccccccC--cchhhHHHhhhhhhhcccCCceEEEeeeccCCcCH
Confidence 99999999999999988888877543 6899999999999754 344555554432 23457899999999999
Q ss_pred HHHHHHHHHHH
Q 030524 160 KLCCHTLNSLI 170 (175)
Q Consensus 160 ~~~f~~l~~~~ 170 (175)
.+.|+||.+.|
T Consensus 165 ~e~l~WL~~~~ 175 (175)
T PF00025_consen 165 DEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcC
Confidence 99999999875
No 119
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.97 E-value=1.4e-29 Score=169.86 Aligned_cols=152 Identities=22% Similarity=0.377 Sum_probs=118.7
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEE
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (175)
+|+++|++|+|||||++++.++.+.. ..++.+.+.. .+.. +..+.+.+||++|++.+...+..++.++|++|+|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~--~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVE--MLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceE--EEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999999987653 3555554432 2223 345689999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHH------HHhcCCeEEEeccCCCCCHHHHH
Q 030524 91 VASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAK------SRELNVMFIETSAKAGFNIKLCC 163 (175)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~------~~~~~~~~~~~s~~~~~~v~~~f 163 (175)
++++.++.....|+..+..... .+.|+++++||+|+... ....+.... +...++++++|||++|+|++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 9999999999888888866432 57999999999998532 122222222 22234579999999999999999
Q ss_pred HHHHH
Q 030524 164 HTLNS 168 (175)
Q Consensus 164 ~~l~~ 168 (175)
++|.+
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 99864
No 120
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.97 E-value=4.6e-29 Score=168.43 Aligned_cols=152 Identities=24% Similarity=0.391 Sum_probs=118.3
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCC------CCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKF------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (175)
+|+++|++|+|||||++++..... ...+.++.+.+.. .+..+ ...+.+||+||++.+..++..++.++|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 689999999999999999986432 2233444444443 23333 4689999999999999999999999999
Q ss_pred EEEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHh-------cCCeEEEeccCCC
Q 030524 85 AVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-------LNVMFIETSAKAG 156 (175)
Q Consensus 85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~s~~~~ 156 (175)
+++|+|+++++++.....|+..+..... .++|+++++||+|+.+. ....+...+... .+++++++||++|
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 154 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG 154 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence 9999999999999998888888776433 67999999999998543 334444444332 3468999999999
Q ss_pred CCHHHHHHHHHH
Q 030524 157 FNIKLCCHTLNS 168 (175)
Q Consensus 157 ~~v~~~f~~l~~ 168 (175)
+|++++|++|.+
T Consensus 155 ~gv~e~~~~l~~ 166 (167)
T cd04160 155 TGVREGIEWLVE 166 (167)
T ss_pred cCHHHHHHHHhc
Confidence 999999999865
No 121
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.97 E-value=2.4e-29 Score=168.39 Aligned_cols=151 Identities=23% Similarity=0.314 Sum_probs=120.5
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEE
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (175)
||+++|++|+|||||+++++++. .....++.+.+... +... ...+.+||+||++.+...+..+++++|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~-~~~~~~t~~~~~~~--~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE-VVTTIPTIGFNVET--VEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCcCcceEE--EEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 68999999999999999999887 33445555544332 2333 4679999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----hcCCeEEEeccCCCCCHHHHHH
Q 030524 91 VASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNIKLCCH 164 (175)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~~~f~ 164 (175)
+++++++.....|+..+..... .+.|+++++||+|+.+.. ..++..+... ...++++++|+++|.|+.++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 9999999999888888776543 689999999999986533 3333333332 2346899999999999999999
Q ss_pred HHHH
Q 030524 165 TLNS 168 (175)
Q Consensus 165 ~l~~ 168 (175)
+|..
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 9875
No 122
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.97 E-value=9.1e-30 Score=170.55 Aligned_cols=151 Identities=22% Similarity=0.327 Sum_probs=114.7
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEE
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (175)
||+++|++|+|||||++++..+.+.. ..++.+.+.. .+.. ....+.+||+||++.+...+..++..+|++|+|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999998776543 3455554433 2222 34689999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HhcCCeEEEeccCCCCCHHHHHH
Q 030524 91 VASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIKLCCH 164 (175)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~~f~ 164 (175)
++++.++.....++..+.... ..+.|+++++||+|+.+.. ...+..... ...+++++++||++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence 999988887766666554432 2579999999999985432 222322211 12235799999999999999999
Q ss_pred HHHH
Q 030524 165 TLNS 168 (175)
Q Consensus 165 ~l~~ 168 (175)
+|.+
T Consensus 154 ~l~~ 157 (158)
T cd04151 154 WLVN 157 (158)
T ss_pred HHhc
Confidence 9875
No 123
>PTZ00099 rab6; Provisional
Probab=99.97 E-value=2.4e-28 Score=165.93 Aligned_cols=141 Identities=65% Similarity=1.009 Sum_probs=128.7
Q ss_pred CCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhc
Q 030524 32 DKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER 111 (175)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 111 (175)
+.+.+.+.+|.+.++....+.+++..+.+.||||+|++++..++..+++++|++|+|||++++++|+.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 34567788999999988888899999999999999999999999999999999999999999999999999999998776
Q ss_pred CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524 112 GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 112 ~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~~~~ 172 (175)
.++.|+++|+||+|+.+.+.+...++..++..+++.++++||++|.|+.++|++|.+.+..
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6789999999999997777788888999999999999999999999999999999988743
No 124
>PLN00023 GTP-binding protein; Provisional
Probab=99.97 E-value=1.5e-28 Score=177.94 Aligned_cols=141 Identities=21% Similarity=0.368 Sum_probs=122.3
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECC-------------eEEEEEEEeCCCccccc
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-------------RTVRLQLWDTAGQERFR 72 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~i~D~~G~~~~~ 72 (175)
....+||+++|+.|||||||+++++.+.+...+.++.+.++..+.+.+++ ..+.+.|||++|+++|.
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr 97 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK 97 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence 34569999999999999999999999988888889998888777666542 46789999999999999
Q ss_pred ccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcC------------CCCcEEEEEeCCCCCCCC---C---CCH
Q 030524 73 SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG------------SDVIIVLVGNKTDLVEKR---Q---VSI 134 (175)
Q Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~------------~~~~~iiv~nk~D~~~~~---~---~~~ 134 (175)
.++..+++++|++|+|||++++++|+.+..|+..+..... .++|+++|+||+|+.+.+ . +..
T Consensus 98 sL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~ 177 (334)
T PLN00023 98 DCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLV 177 (334)
T ss_pred hhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccH
Confidence 9999999999999999999999999999999999987631 358999999999996542 2 357
Q ss_pred HHHHHHHHhcCC
Q 030524 135 EEGEAKSRELNV 146 (175)
Q Consensus 135 ~~~~~~~~~~~~ 146 (175)
++++++++++++
T Consensus 178 e~a~~~A~~~g~ 189 (334)
T PLN00023 178 DAARQWVEKQGL 189 (334)
T ss_pred HHHHHHHHHcCC
Confidence 899999999885
No 125
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.96 E-value=3.4e-28 Score=166.74 Aligned_cols=156 Identities=18% Similarity=0.241 Sum_probs=121.6
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
.+.++|+++|++|+|||||++++.++.+. .+.++.+.+. ..+..+ .+.+.+||+||++.+...+..++.++|++|
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTS--EELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 45699999999999999999999987543 3344444332 222333 367899999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHh------------cCCeEEEecc
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE------------LNVMFIETSA 153 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~s~ 153 (175)
+|+|+++++++.....++..+..... .+.|+++++||+|+.. ....++.+..... ..+.+++|||
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa 167 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV 167 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence 99999999999998888887765422 5799999999999853 3445555443311 2336899999
Q ss_pred CCCCCHHHHHHHHHHH
Q 030524 154 KAGFNIKLCCHTLNSL 169 (175)
Q Consensus 154 ~~~~~v~~~f~~l~~~ 169 (175)
++|.|++++++||.++
T Consensus 168 ~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 168 VRRMGYGEGFKWLSQY 183 (184)
T ss_pred ccCCChHHHHHHHHhh
Confidence 9999999999999865
No 126
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.96 E-value=1.1e-27 Score=154.19 Aligned_cols=163 Identities=20% Similarity=0.317 Sum_probs=133.1
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (175)
..+.++|.++|..||||||++++|.+.. .+...|+.++.. +.... +.+++.+||.+|+...++.|+.|+.+.|++
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~I--ktl~~--~~~~L~iwDvGGq~~lr~~W~nYfestdgl 87 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQI--KTLEY--KGYTLNIWDVGGQKTLRSYWKNYFESTDGL 87 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceee--EEEEe--cceEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence 4458999999999999999999998866 445566666443 33333 447899999999999999999999999999
Q ss_pred EEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCC----HHHHHHHHHhcCCeEEEeccCCCCCHH
Q 030524 86 VVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVS----IEEGEAKSRELNVMFIETSAKAGFNIK 160 (175)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~----~~~~~~~~~~~~~~~~~~s~~~~~~v~ 160 (175)
|+|+|.+|+.++++....+..+..... .+.|+++++||.|+....... ..+.+.+++...++++.||+.+|+++.
T Consensus 88 IwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~ 167 (185)
T KOG0073|consen 88 IWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLL 167 (185)
T ss_pred EEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHH
Confidence 999999999999999888888877544 678999999999986332211 123445567778999999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030524 161 LCCHTLNSLITVC 173 (175)
Q Consensus 161 ~~f~~l~~~~~~~ 173 (175)
+.++||+..+++.
T Consensus 168 ~gidWL~~~l~~r 180 (185)
T KOG0073|consen 168 EGIDWLCDDLMSR 180 (185)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 127
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.96 E-value=1e-27 Score=160.07 Aligned_cols=152 Identities=24% Similarity=0.387 Sum_probs=121.5
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEE
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (175)
.|+++|++|+|||||++++.+..+..++.++.+.+... ...++ +.+.+||+||+..+...+..++..+|++++|+|
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 76 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD 76 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence 37899999999999999999998888888887766543 22333 689999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HhcCCeEEEeccCCCCCHHHHHH
Q 030524 91 VASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIKLCCH 164 (175)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~~f~ 164 (175)
+++++++.....|+..+..... .++|+++++||+|+.+... ..+..... ....++++++|+++|.|+.++|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 154 (159)
T cd04159 77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD 154 (159)
T ss_pred CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence 9999999888887777765432 5789999999999864332 22222111 22346889999999999999999
Q ss_pred HHHH
Q 030524 165 TLNS 168 (175)
Q Consensus 165 ~l~~ 168 (175)
+|.+
T Consensus 155 ~l~~ 158 (159)
T cd04159 155 WLIK 158 (159)
T ss_pred HHhh
Confidence 9875
No 128
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.96 E-value=2.2e-27 Score=161.98 Aligned_cols=155 Identities=18% Similarity=0.216 Sum_probs=114.2
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC-------CCCcccc------cceeeEEEEEEEE-----CCeEEEEEEEeCCCccccc
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDK-------FDNTYQA------TIGIDFLSKTMYL-----EDRTVRLQLWDTAGQERFR 72 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~i~D~~G~~~~~ 72 (175)
+|+++|++++|||||+++|++.. ....+.+ +.+.+........ ++..+.+.+|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 79999999999999999998732 1111211 2233333332222 5667889999999999999
Q ss_pred ccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC---eEE
Q 030524 73 SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV---MFI 149 (175)
Q Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~---~~~ 149 (175)
..+..++..+|++|+|+|++++.+++....|.... ..++|+++++||+|+.+.. .......+++.+++ .++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~ 155 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI 155 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence 99999999999999999999877666665554322 2468999999999985422 12233455666665 489
Q ss_pred EeccCCCCCHHHHHHHHHHHHh
Q 030524 150 ETSAKAGFNIKLCCHTLNSLIT 171 (175)
Q Consensus 150 ~~s~~~~~~v~~~f~~l~~~~~ 171 (175)
++||++|+|++++|+++.+.+.
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 156 LVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred EeeccCCCCHHHHHHHHHhhCC
Confidence 9999999999999999988753
No 129
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.95 E-value=7.2e-27 Score=157.87 Aligned_cols=156 Identities=17% Similarity=0.178 Sum_probs=107.7
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc---------ccccccc
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---------LIPSYIR 80 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---------~~~~~~~ 80 (175)
.+|+++|++|+|||||++++.+........+..+.+...... ......+.+|||||+..... .......
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHF--DYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEE--ccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 379999999999999999999976543222211222222222 22346899999999742110 0111112
Q ss_pred CCcEEEEEEECCChhhH--HhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCC
Q 030524 81 DSSVAVVVYDVASRQSF--LNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158 (175)
Q Consensus 81 ~~d~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 158 (175)
.+|++++|+|++++.++ +....|+..+.... .+.|+++++||+|+.+..... +...++...+++++++||++|.|
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~g 155 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLS--EIEEEEELEGEEVLKISTLTEEG 155 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHH--HHHHhhhhccCceEEEEecccCC
Confidence 36899999999987654 55667777776543 479999999999986543322 24555565678999999999999
Q ss_pred HHHHHHHHHHHH
Q 030524 159 IKLCCHTLNSLI 170 (175)
Q Consensus 159 v~~~f~~l~~~~ 170 (175)
++++|+++.+.+
T Consensus 156 i~~l~~~l~~~~ 167 (168)
T cd01897 156 VDEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 130
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.95 E-value=2.6e-26 Score=152.93 Aligned_cols=158 Identities=27% Similarity=0.407 Sum_probs=128.2
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (175)
.+||+++|++|+|||||++++........+.++.+.+........++..+.+.+||+||+.++...+..+.++++.++++
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 37999999999999999999999887777777888777777677777778899999999999999988889999999999
Q ss_pred EECCCh-hhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524 89 YDVASR-QSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166 (175)
Q Consensus 89 ~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l 166 (175)
+|.... .++.... .|...+......+.|+++++||+|+.... ........+......+++++|+.+|.|+.++|++|
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 999877 6666654 66666666554489999999999986543 23333344444445689999999999999999986
Q ss_pred H
Q 030524 167 N 167 (175)
Q Consensus 167 ~ 167 (175)
.
T Consensus 160 ~ 160 (161)
T TIGR00231 160 E 160 (161)
T ss_pred h
Confidence 4
No 131
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.95 E-value=2e-26 Score=156.45 Aligned_cols=153 Identities=22% Similarity=0.358 Sum_probs=117.5
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (175)
....++|+++|++|+|||||++++.+.... ...++.+.+.. .+..++ ..+.+||++|+..+...+..++.++|++
T Consensus 11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~--~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~i 85 (173)
T cd04155 11 SSEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNIK--TVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCL 85 (173)
T ss_pred cCCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEE
Confidence 345799999999999999999999987543 34455554332 333444 5689999999998888888999999999
Q ss_pred EEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcC--------CeEEEeccCCC
Q 030524 86 VVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN--------VMFIETSAKAG 156 (175)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~s~~~~ 156 (175)
++|+|+++..++.....++..+..... .++|+++++||+|+.+.. ...+ .....+ ++++++||++|
T Consensus 86 i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~---i~~~l~~~~~~~~~~~~~~~Sa~~~ 160 (173)
T cd04155 86 IYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA--PAEE---IAEALNLHDLRDRTWHIQACSAKTG 160 (173)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC--CHHH---HHHHcCCcccCCCeEEEEEeECCCC
Confidence 999999999999888887777665432 579999999999985432 2222 222222 24789999999
Q ss_pred CCHHHHHHHHHH
Q 030524 157 FNIKLCCHTLNS 168 (175)
Q Consensus 157 ~~v~~~f~~l~~ 168 (175)
+|++++|+||.+
T Consensus 161 ~gi~~~~~~l~~ 172 (173)
T cd04155 161 EGLQEGMNWVCK 172 (173)
T ss_pred CCHHHHHHHHhc
Confidence 999999999875
No 132
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.95 E-value=9.9e-27 Score=157.42 Aligned_cols=157 Identities=15% Similarity=0.131 Sum_probs=110.3
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccc----cccccccc---ccCCc
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----FRSLIPSY---IRDSS 83 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~---~~~~d 83 (175)
+|+++|.+|+|||||+++|.+........+..+.+........++. ..+.+|||||... ...+...+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 6899999999999999999876532111111111211122223332 4789999999632 22223333 34699
Q ss_pred EEEEEEECCCh-hhHHhHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHh-cCCeEEEeccCCCCCH
Q 030524 84 VAVVVYDVASR-QSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNI 159 (175)
Q Consensus 84 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~--~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~v 159 (175)
++++|+|++++ ++++.+..|.+.+..... ...|+++++||+|+.+.... ......+... .+++++++|++++.|+
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi 159 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence 99999999999 789888889888876542 46899999999998654433 3334444555 3788999999999999
Q ss_pred HHHHHHHHHH
Q 030524 160 KLCCHTLNSL 169 (175)
Q Consensus 160 ~~~f~~l~~~ 169 (175)
+++|+++.+.
T Consensus 160 ~~l~~~i~~~ 169 (170)
T cd01898 160 DELLRKLAEL 169 (170)
T ss_pred HHHHHHHHhh
Confidence 9999998865
No 133
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4e-27 Score=155.23 Aligned_cols=161 Identities=20% Similarity=0.286 Sum_probs=134.5
Q ss_pred CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 030524 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (175)
Q Consensus 5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (175)
......+|+++|-.++||||++.+|..+..... .||.++......+. .+.+.+||.+|+++++..|++|+.+.++
T Consensus 13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~yk----n~~f~vWDvGGq~k~R~lW~~Y~~~t~~ 87 (181)
T KOG0070|consen 13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEYK----NISFTVWDVGGQEKLRPLWKHYFQNTQG 87 (181)
T ss_pred cCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEEc----ceEEEEEecCCCcccccchhhhccCCcE
Confidence 355789999999999999999999988876655 88888776655543 5789999999999999999999999999
Q ss_pred EEEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHh-----cCCeEEEeccCCCCC
Q 030524 85 AVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-----LNVMFIETSAKAGFN 158 (175)
Q Consensus 85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~ 158 (175)
+|||+|.+|++++.+.+..+..+..+.. .+.|+++++||.|+..+.. ..+....... ..+.+-.|+|.+|+|
T Consensus 88 lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als--~~ei~~~L~l~~l~~~~w~iq~~~a~~G~G 165 (181)
T KOG0070|consen 88 LIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS--AAEITNKLGLHSLRSRNWHIQSTCAISGEG 165 (181)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCC--HHHHHhHhhhhccCCCCcEEeecccccccc
Confidence 9999999999999999999998888765 7899999999999865433 3344333332 345688899999999
Q ss_pred HHHHHHHHHHHHhh
Q 030524 159 IKLCCHTLNSLITV 172 (175)
Q Consensus 159 v~~~f~~l~~~~~~ 172 (175)
+.+.++|+.+.+..
T Consensus 166 L~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 166 LYEGLDWLSNNLKK 179 (181)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988764
No 134
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.95 E-value=1.7e-26 Score=160.85 Aligned_cols=155 Identities=19% Similarity=0.220 Sum_probs=112.0
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccc---------cccccccc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------FRSLIPSY 78 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~ 78 (175)
..++|+++|++|||||||++++++........+..+.+.....+..++. ..+.+||+||... +...+ ..
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~ 117 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-EE 117 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-HH
Confidence 3589999999999999999999997643322222233333334444443 2689999999732 11111 23
Q ss_pred ccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCC
Q 030524 79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158 (175)
Q Consensus 79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 158 (175)
+.++|++++|+|++++.++.....|...+......+.|+++|+||+|+.+.... ...+...+.+++++|+++|.|
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~Sa~~~~g 192 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL-----EERLEAGRPDAVFISAKTGEG 192 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH-----HHHhhcCCCceEEEEcCCCCC
Confidence 568999999999999988887777776665544467999999999998653321 134455667999999999999
Q ss_pred HHHHHHHHHHH
Q 030524 159 IKLCCHTLNSL 169 (175)
Q Consensus 159 v~~~f~~l~~~ 169 (175)
+.++|++|.+.
T Consensus 193 i~~l~~~L~~~ 203 (204)
T cd01878 193 LDELLEAIEEL 203 (204)
T ss_pred HHHHHHHHHhh
Confidence 99999998765
No 135
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.94 E-value=6.8e-26 Score=167.21 Aligned_cols=162 Identities=14% Similarity=0.085 Sum_probs=117.9
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccc-------cccccccccCC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYIRDS 82 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~ 82 (175)
-.|+|+|.||||||||++++..........+..+.....-.+... +...+.+||+||..+- ...+-..++.+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 468999999999999999999765332222222333333333332 2246899999996321 11223345679
Q ss_pred cEEEEEEECCChhhHHhHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHH
Q 030524 83 SVAVVVYDVASRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160 (175)
Q Consensus 83 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~ 160 (175)
+++++|+|++++++++.+..|..++..+.. .+.|+++|+||+|+.+.........+.++...+++++++||++++|++
T Consensus 238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~ 317 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLD 317 (335)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHH
Confidence 999999999988889999999998887643 478999999999986554444344555556667899999999999999
Q ss_pred HHHHHHHHHHhh
Q 030524 161 LCCHTLNSLITV 172 (175)
Q Consensus 161 ~~f~~l~~~~~~ 172 (175)
++|++|.+.+..
T Consensus 318 eL~~~L~~~l~~ 329 (335)
T PRK12299 318 ELLRALWELLEE 329 (335)
T ss_pred HHHHHHHHHHHh
Confidence 999999887754
No 136
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.94 E-value=4.3e-26 Score=153.27 Aligned_cols=151 Identities=19% Similarity=0.125 Sum_probs=104.5
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC---CCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDK---FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (175)
.|+++|++|+|||||+++|.+.. +..++.+..+.+.........+ ...+.+|||||++++......++.++|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 68999999999999999999643 2223333334444334444442 3579999999999888777778889999999
Q ss_pred EEECCC---hhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC--CCHHHHHHHHHh---cCCeEEEeccCCCCCH
Q 030524 88 VYDVAS---RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--VSIEEGEAKSRE---LNVMFIETSAKAGFNI 159 (175)
Q Consensus 88 v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~s~~~~~~v 159 (175)
|+|+++ +++.+.+ ..+. .. ...|+++++||+|+.+... ....+..+..+. .+.+++++|+++|+|+
T Consensus 81 V~d~~~~~~~~~~~~~----~~~~-~~-~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 154 (164)
T cd04171 81 VVAADEGIMPQTREHL----EILE-LL-GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGI 154 (164)
T ss_pred EEECCCCccHhHHHHH----HHHH-Hh-CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCH
Confidence 999987 3333222 2221 11 2248999999999864321 112333444444 4679999999999999
Q ss_pred HHHHHHHHH
Q 030524 160 KLCCHTLNS 168 (175)
Q Consensus 160 ~~~f~~l~~ 168 (175)
+++|+.+.+
T Consensus 155 ~~l~~~l~~ 163 (164)
T cd04171 155 EELKEYLDE 163 (164)
T ss_pred HHHHHHHhh
Confidence 999998764
No 137
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.94 E-value=2.2e-25 Score=156.78 Aligned_cols=164 Identities=40% Similarity=0.571 Sum_probs=135.4
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (175)
.+||+++|+.|+|||||+++|.+..+...+.++.+..+........+..+++.+||++|+++++..+..|+.++++++++
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999999999999999988777777777776688999999999999999999999999999999
Q ss_pred EECCChh-hHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC------------CCCHHHHHHHHHhc---CCeEEEec
Q 030524 89 YDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR------------QVSIEEGEAKSREL---NVMFIETS 152 (175)
Q Consensus 89 ~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~------------~~~~~~~~~~~~~~---~~~~~~~s 152 (175)
||..+.. .++....|...+........|+++++||+|+.... ..........+... ...++++|
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 164 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS 164 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence 9999954 55557888888887766679999999999997653 22222222222222 33589999
Q ss_pred cC--CCCCHHHHHHHHHHHHhh
Q 030524 153 AK--AGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 153 ~~--~~~~v~~~f~~l~~~~~~ 172 (175)
++ .+.++.++|..+.+.+..
T Consensus 165 ~~~~~~~~v~~~~~~~~~~~~~ 186 (219)
T COG1100 165 AKSLTGPNVNELFKELLRKLLE 186 (219)
T ss_pred cccCCCcCHHHHHHHHHHHHHH
Confidence 99 999999999998887753
No 138
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.94 E-value=2.7e-25 Score=146.79 Aligned_cols=153 Identities=46% Similarity=0.741 Sum_probs=123.5
Q ss_pred EECCCCCCHHHHHHHHhcCCC-CCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEECC
Q 030524 14 FLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVA 92 (175)
Q Consensus 14 l~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 92 (175)
++|++|+|||||++++.+... .....++. .+..............+.+||+||+..+...+..+++++|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999999877 45555555 7777777777777889999999999888888888899999999999999
Q ss_pred ChhhHHhHHHHH-HHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHH-HHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524 93 SRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLVEKRQVSIEE-GEAKSRELNVMFIETSAKAGFNIKLCCHTLN 167 (175)
Q Consensus 93 ~~~~~~~~~~~~-~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~ 167 (175)
++.++.....|+ .........++|+++++||+|+.......... ........+++++++|+..+.|+.+++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 999988888773 23333344789999999999986544333322 4455556678999999999999999999875
No 139
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.94 E-value=2.7e-26 Score=151.05 Aligned_cols=134 Identities=20% Similarity=0.278 Sum_probs=99.3
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcc-----cccccccccccCCcEE
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE-----RFRSLIPSYIRDSSVA 85 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~~~~~~~~~d~~ 85 (175)
||+++|++|+|||||++++.+.... +.++.+.++ . -.+||+||+. .+..... .++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~~-------~-----~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVEY-------N-----DGAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEEE-------c-----CeeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 7999999999999999999987542 223322221 1 1689999972 2333333 47899999
Q ss_pred EEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC-eEEEeccCCCCCHHHHHH
Q 030524 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKLCCH 164 (175)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~f~ 164 (175)
|+|||++++.++.. ..|.... ..|+++++||+|+.+ .....++.++++...+. +++++||++|.|++++|.
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence 99999999988765 2343221 249999999999864 34455666777777776 899999999999999999
Q ss_pred HHH
Q 030524 165 TLN 167 (175)
Q Consensus 165 ~l~ 167 (175)
++.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 874
No 140
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.94 E-value=5.8e-25 Score=140.34 Aligned_cols=166 Identities=25% Similarity=0.308 Sum_probs=140.8
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCC--CcccccceeeEEEEEE-EECCeEEEEEEEeCCCcccc-cccccccccCCc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD--NTYQATIGIDFLSKTM-YLEDRTVRLQLWDTAGQERF-RSLIPSYIRDSS 83 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~~~-~~~~~~~~~~~d 83 (175)
+..|++++|..++|||+++++++.+... .++.+|.. +.+...+ +-++-.-.++++||.|...+ ..+-++|+.-+|
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 4589999999999999999999876543 45677776 4444444 44555678999999997766 567789999999
Q ss_pred EEEEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHH
Q 030524 84 VAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLC 162 (175)
Q Consensus 84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~ 162 (175)
++++||+..|++||+.+......+.+... +.+|+++++||+|+.++++++.+.+..||++..++++++++.+...+-+.
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ep 166 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEP 166 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhH
Confidence 99999999999999998777777766554 78999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhh
Q 030524 163 CHTLNSLITVCI 174 (175)
Q Consensus 163 f~~l~~~~~~~~ 174 (175)
|.++...+....
T Consensus 167 f~~l~~rl~~pq 178 (198)
T KOG3883|consen 167 FTYLASRLHQPQ 178 (198)
T ss_pred HHHHHHhccCCc
Confidence 999998876543
No 141
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.93 E-value=3.3e-25 Score=149.65 Aligned_cols=157 Identities=18% Similarity=0.142 Sum_probs=108.9
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEEC-CeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (175)
.|+++|++|+|||||+++|....+.....+..+.+........+ +....+.+|||||++.+...+..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 48999999999999999999887665444444434433343333 23567999999999999888888899999999999
Q ss_pred ECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCC-HHHHHHHH------HhcCCeEEEeccCCCCCHHHH
Q 030524 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS-IEEGEAKS------RELNVMFIETSAKAGFNIKLC 162 (175)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~-~~~~~~~~------~~~~~~~~~~s~~~~~~v~~~ 162 (175)
|++++..-+ ....+..+.. .++|+++++||+|+....... ......+. ...+++++++|+++|+|+.++
T Consensus 82 d~~~~~~~~-~~~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T cd01887 82 AADDGVMPQ-TIEAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL 157 (168)
T ss_pred ECCCCccHH-HHHHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence 998743211 1112222222 468999999999986332111 11111111 112368999999999999999
Q ss_pred HHHHHHHHh
Q 030524 163 CHTLNSLIT 171 (175)
Q Consensus 163 f~~l~~~~~ 171 (175)
|++|.+...
T Consensus 158 ~~~l~~~~~ 166 (168)
T cd01887 158 LEAILLLAE 166 (168)
T ss_pred HHHHHHhhh
Confidence 999987654
No 142
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.93 E-value=8.1e-25 Score=146.27 Aligned_cols=148 Identities=19% Similarity=0.227 Sum_probs=110.0
Q ss_pred EECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccccccc------ccccc--cCCcEE
Q 030524 14 FLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL------IPSYI--RDSSVA 85 (175)
Q Consensus 14 l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~d~~ 85 (175)
++|.+|+|||||++++.+........+..+.+.....+..++ ..+.+|||||+..+... +..++ +++|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998764444445555555555555655 46899999998776542 45555 499999
Q ss_pred EEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHH
Q 030524 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHT 165 (175)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~ 165 (175)
++|+|+++++... .+...+.. .++|+++++||+|+.+...... ....++..++++++++|+.+|.|+.++|.+
T Consensus 79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~ 151 (158)
T cd01879 79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKRGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKDA 151 (158)
T ss_pred EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence 9999998765432 33333332 3689999999999865544333 345677778899999999999999999999
Q ss_pred HHHHH
Q 030524 166 LNSLI 170 (175)
Q Consensus 166 l~~~~ 170 (175)
+.+.+
T Consensus 152 l~~~~ 156 (158)
T cd01879 152 IAELA 156 (158)
T ss_pred HHHHh
Confidence 88764
No 143
>PRK04213 GTP-binding protein; Provisional
Probab=99.93 E-value=9.7e-26 Score=156.64 Aligned_cols=153 Identities=22% Similarity=0.267 Sum_probs=104.2
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCC-----------cccccccc
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG-----------QERFRSLI 75 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~ 75 (175)
...++|+++|++|+|||||++++.+..+.....+.. +......... .+.+||||| ++.++..+
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~--t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGV--TRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCce--eeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 456899999999999999999999877554444433 3333333322 589999999 45666666
Q ss_pred ccccc----CCcEEEEEEECCChhhHHhHHHH-----------HHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHH
Q 030524 76 PSYIR----DSSVAVVVYDVASRQSFLNTSKW-----------IDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAK 140 (175)
Q Consensus 76 ~~~~~----~~d~~i~v~d~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~ 140 (175)
..++. .++++++|+|.++...+ ...| +..... ..++|+++++||+|+.+.. .....++
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~--~~~~~~~~~~~~~~~l~~~~~--~~~~p~iiv~NK~Dl~~~~---~~~~~~~ 153 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEI--IERWEGRGEIPIDVEMFDFLR--ELGIPPIVAVNKMDKIKNR---DEVLDEI 153 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCcccccc--ccccccCCCcHHHHHHHHHHH--HcCCCeEEEEECccccCcH---HHHHHHH
Confidence 55554 45788888887543211 0111 111111 2479999999999986433 3345555
Q ss_pred HHhcCC---------eEEEeccCCCCCHHHHHHHHHHHHhhh
Q 030524 141 SRELNV---------MFIETSAKAGFNIKLCCHTLNSLITVC 173 (175)
Q Consensus 141 ~~~~~~---------~~~~~s~~~~~~v~~~f~~l~~~~~~~ 173 (175)
+..+++ +++++||++| |++++|++|.+.+...
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 154 AERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA 194 (201)
T ss_pred HHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence 666654 4899999999 9999999999886553
No 144
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.93 E-value=2.6e-25 Score=153.69 Aligned_cols=148 Identities=17% Similarity=0.228 Sum_probs=104.0
Q ss_pred eeEEEECCCCCCHHHHHHHHhc--CCCCCcc------------cccceeeEEEEEEEECCeEEEEEEEeCCCcccccccc
Q 030524 10 YKLVFLGDQSVGKTSIITRFMY--DKFDNTY------------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI 75 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 75 (175)
.+|+++|.+|+|||||+++|+. +.+...+ ..+.+.+.......++.....+.+|||||+++|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 5899999999999999999997 3333222 1223444444444455556789999999999999999
Q ss_pred cccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC-CHHHHHHHHH-------hcCCe
Q 030524 76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-SIEEGEAKSR-------ELNVM 147 (175)
Q Consensus 76 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~-~~~~~~~~~~-------~~~~~ 147 (175)
..++.++|++++|+|+++.. +.....++..... .++|+++++||+|+.+.... ...+...+.. ..+++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence 99999999999999998742 2233333333322 47899999999998643221 1233333332 23679
Q ss_pred EEEeccCCCCCHHH
Q 030524 148 FIETSAKAGFNIKL 161 (175)
Q Consensus 148 ~~~~s~~~~~~v~~ 161 (175)
++++|+++|.|+.+
T Consensus 159 iv~~Sa~~g~~~~~ 172 (194)
T cd01891 159 VLYASAKNGWASLN 172 (194)
T ss_pred EEEeehhccccccc
Confidence 99999999987643
No 145
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.93 E-value=3.1e-25 Score=146.09 Aligned_cols=148 Identities=21% Similarity=0.273 Sum_probs=105.8
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccc------ccccccccc--cC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER------FRSLIPSYI--RD 81 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------~~~~~~~~~--~~ 81 (175)
++|+++|.||+|||||+|+|++........+..+++.....+...+ ..+.++|+||--. -......++ .+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 5899999999999999999999886655566677777766776666 5689999999311 122334444 58
Q ss_pred CcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHH
Q 030524 82 SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKL 161 (175)
Q Consensus 82 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~ 161 (175)
.|++|+|.|+++.+.-..+ ..++.. .++|+++++||+|..+...... ....+.+.+++|++.+||++++|+++
T Consensus 79 ~D~ii~VvDa~~l~r~l~l---~~ql~e---~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNLYL---TLQLLE---LGIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDE 151 (156)
T ss_dssp SSEEEEEEEGGGHHHHHHH---HHHHHH---TTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred CCEEEEECCCCCHHHHHHH---HHHHHH---cCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence 9999999999875432222 222322 4799999999999865444333 36677888999999999999999999
Q ss_pred HHHHH
Q 030524 162 CCHTL 166 (175)
Q Consensus 162 ~f~~l 166 (175)
+++.+
T Consensus 152 L~~~I 156 (156)
T PF02421_consen 152 LKDAI 156 (156)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 98864
No 146
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.93 E-value=2.6e-24 Score=158.75 Aligned_cols=158 Identities=17% Similarity=0.145 Sum_probs=113.4
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCccccc----ccccc---cccC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR----SLIPS---YIRD 81 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----~~~~~---~~~~ 81 (175)
-.|+++|.||+|||||++++...... ..+..+ +.......+..++ ...+.+||+||..+.. .+... .+.+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fT-T~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFT-TLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCC-ccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 57899999999999999999986533 222222 2233333333433 3578999999964321 22222 3457
Q ss_pred CcEEEEEEECCCh---hhHHhHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCC
Q 030524 82 SSVAVVVYDVASR---QSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG 156 (175)
Q Consensus 82 ~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~--~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 156 (175)
++++++|+|+++. ++++.+..|.+++..+.. .+.|+++|+||+|+.++.. .....+.++...+.+++++||+++
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg 314 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTG 314 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCC
Confidence 9999999999976 677788888877766543 4789999999999865432 233445566667889999999999
Q ss_pred CCHHHHHHHHHHHH
Q 030524 157 FNIKLCCHTLNSLI 170 (175)
Q Consensus 157 ~~v~~~f~~l~~~~ 170 (175)
+|++++|+++.+.+
T Consensus 315 ~GI~eL~~~I~~~l 328 (329)
T TIGR02729 315 EGLDELLYALAELL 328 (329)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999998764
No 147
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.93 E-value=1.2e-24 Score=139.13 Aligned_cols=114 Identities=32% Similarity=0.561 Sum_probs=89.4
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCCC--CcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKFD--NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (175)
||+++|++|||||||+++|++.... ....+..+.+..............+.+||++|++.+...+...+.++|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999998765 22333444455555667777777799999999999888888889999999999
Q ss_pred EECCChhhHHhHHHH---HHHHHHhcCCCCcEEEEEeCCC
Q 030524 89 YDVASRQSFLNTSKW---IDEVRTERGSDVIIVLVGNKTD 125 (175)
Q Consensus 89 ~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~iiv~nk~D 125 (175)
||++++++++.+..+ +..+... ..++|+++++||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~-~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR-DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH-SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc-CCCCCEEEEEeccC
Confidence 999999999997555 4544443 35699999999998
No 148
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.93 E-value=3.2e-24 Score=159.53 Aligned_cols=153 Identities=20% Similarity=0.186 Sum_probs=109.5
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcc---------cccccccccc
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE---------RFRSLIPSYI 79 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~~ 79 (175)
.++|+++|.+|+|||||+|+|++........+..+.+.....+..++. ..+.+|||+|.. .|...+ ..+
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~ 266 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-EEV 266 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-HHH
Confidence 489999999999999999999997644333333334555556666432 378999999962 222222 247
Q ss_pred cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCH
Q 030524 80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159 (175)
Q Consensus 80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 159 (175)
.++|++++|+|++++.+.+....|...+......+.|+++|+||+|+.+... ..... ....+++.+||++|.|+
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~-----v~~~~-~~~~~~i~iSAktg~GI 340 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR-----IERLE-EGYPEAVFVSAKTGEGL 340 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh-----HHHHH-hCCCCEEEEEccCCCCH
Confidence 8999999999999998877776665555443335789999999999854221 11111 22346899999999999
Q ss_pred HHHHHHHHHH
Q 030524 160 KLCCHTLNSL 169 (175)
Q Consensus 160 ~~~f~~l~~~ 169 (175)
++++++|.+.
T Consensus 341 ~eL~~~I~~~ 350 (351)
T TIGR03156 341 DLLLEAIAER 350 (351)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 149
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.92 E-value=1.9e-24 Score=146.91 Aligned_cols=155 Identities=18% Similarity=0.143 Sum_probs=107.3
Q ss_pred EECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccc----ccccc---cccccCCcEEE
Q 030524 14 FLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----FRSLI---PSYIRDSSVAV 86 (175)
Q Consensus 14 l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~---~~~~~~~d~~i 86 (175)
++|++|||||||+++|.+........+..+.+........++ ...+.+||+||..+ ...++ ...+.++|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 589999999999999998764211122222222223333331 35689999999632 22222 23467899999
Q ss_pred EEEECCCh------hhHHhHHHHHHHHHHhcC-------CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEecc
Q 030524 87 VVYDVASR------QSFLNTSKWIDEVRTERG-------SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSA 153 (175)
Q Consensus 87 ~v~d~~~~------~~~~~~~~~~~~~~~~~~-------~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 153 (175)
+|+|++++ .+++....|...+..... .+.|+++++||+|+..................+.+++++|+
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA 159 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence 99999988 577777777777765432 37999999999998654443332233444555678999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 030524 154 KAGFNIKLCCHTLNSL 169 (175)
Q Consensus 154 ~~~~~v~~~f~~l~~~ 169 (175)
+++.|++++++++.+.
T Consensus 160 ~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 160 KTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhcCHHHHHHHHHhh
Confidence 9999999999998764
No 150
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.92 E-value=1.4e-23 Score=160.10 Aligned_cols=151 Identities=22% Similarity=0.217 Sum_probs=114.5
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCC-CCcccccceeeEEEEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSY 78 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~ 78 (175)
..++|+++|++|+|||||+|+|++... .....+..+.+.....+..++ ..+.+|||||..++... ...+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 458999999999999999999998653 223344555677777777776 45799999997654432 2357
Q ss_pred ccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCC
Q 030524 79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158 (175)
Q Consensus 79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 158 (175)
++++|++++|+|++++.+++.. |+..+.. .++|+++|+||+|+.+. ....++..++++++++|+++ .|
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~g 347 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-LK 347 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-CC
Confidence 7899999999999998877664 5555432 46899999999998543 12345666778899999997 69
Q ss_pred HHHHHHHHHHHHhh
Q 030524 159 IKLCCHTLNSLITV 172 (175)
Q Consensus 159 v~~~f~~l~~~~~~ 172 (175)
+.++|+.|.+.+..
T Consensus 348 I~~~~~~L~~~i~~ 361 (442)
T TIGR00450 348 IKALVDLLTQKINA 361 (442)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998887754
No 151
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.92 E-value=1.7e-23 Score=139.53 Aligned_cols=146 Identities=22% Similarity=0.219 Sum_probs=106.7
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCccccccc--------cccccc
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSYIR 80 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~ 80 (175)
++|+++|++|+|||||++++++.... ....+..+.+........++ ..+.+|||||...+... ....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 58999999999999999999987532 22233333344444444443 46899999997654332 234567
Q ss_pred CCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHH
Q 030524 81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160 (175)
Q Consensus 81 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~ 160 (175)
++|++++|+|++++.+......+.. ..+.|+++++||+|+.+.... .....+.+++++|++++.|+.
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~ 146 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD 146 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence 9999999999998877666544332 357999999999998654433 334456799999999999999
Q ss_pred HHHHHHHHHH
Q 030524 161 LCCHTLNSLI 170 (175)
Q Consensus 161 ~~f~~l~~~~ 170 (175)
+++++|.+.+
T Consensus 147 ~l~~~l~~~~ 156 (157)
T cd04164 147 ELKEALLELA 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999988754
No 152
>PRK15494 era GTPase Era; Provisional
Probab=99.92 E-value=2.1e-23 Score=154.83 Aligned_cols=158 Identities=21% Similarity=0.297 Sum_probs=107.1
Q ss_pred CCCCceeEEEECCCCCCHHHHHHHHhcCCCCC-cccccceeeEEEEEEEECCeEEEEEEEeCCCcccc-cccc-------
Q 030524 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-RSLI------- 75 (175)
Q Consensus 5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-~~~~------- 75 (175)
++.+.++|+++|.+|+|||||+|+|++..+.. ...+..+.+.....+..++ .++.+|||||..+. ..+.
T Consensus 48 ~~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~ 125 (339)
T PRK15494 48 SNQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCA 125 (339)
T ss_pred cccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHH
Confidence 34566899999999999999999999876542 1111222233333444554 46899999997432 2211
Q ss_pred cccccCCcEEEEEEECCChhhHHhHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcC--CeEEEec
Q 030524 76 PSYIRDSSVAVVVYDVASRQSFLNTSK-WIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN--VMFIETS 152 (175)
Q Consensus 76 ~~~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s 152 (175)
...+.++|++++|+|..+ ++..... |+..+.. .+.|.++++||+|+.+. ...+..+++...+ ..++++|
T Consensus 126 ~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iS 197 (339)
T PRK15494 126 WSSLHSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPIS 197 (339)
T ss_pred HHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEe
Confidence 123679999999999765 4445433 4443332 24677889999998542 2345555555444 5899999
Q ss_pred cCCCCCHHHHHHHHHHHHhh
Q 030524 153 AKAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 153 ~~~~~~v~~~f~~l~~~~~~ 172 (175)
|++|.|++++|++|.+.+.+
T Consensus 198 Aktg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 198 ALSGKNIDGLLEYITSKAKI 217 (339)
T ss_pred ccCccCHHHHHHHHHHhCCC
Confidence 99999999999999887543
No 153
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.2e-23 Score=132.50 Aligned_cols=159 Identities=24% Similarity=0.372 Sum_probs=129.0
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
.+.++|+++|-.++||||++-.|+.+. +....||.++...... .+.+.|.+||.+|+++.+..|++|+....++|
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~-~~~~ipTvGFnvetVt----ykN~kfNvwdvGGqd~iRplWrhYy~gtqglI 89 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVT----YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 89 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCC-CcccccccceeEEEEE----eeeeEEeeeeccCchhhhHHHHhhccCCceEE
Confidence 357899999999999999999998765 4455777776544333 35578999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHH-----HHhcCCeEEEeccCCCCCHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAK-----SRELNVMFIETSAKAGFNIK 160 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~v~ 160 (175)
||+|..+++.+++.+..+-.+..... .+.|+++.+||.|+..+. ..+++..+ ++..++.+.++++.+|+|+.
T Consensus 90 FV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~--~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~ 167 (180)
T KOG0071|consen 90 FVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM--KPQEIQDKLELERIRDRNWYVQPSCALSGDGLK 167 (180)
T ss_pred EEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc--CHHHHHHHhccccccCCccEeeccccccchhHH
Confidence 99999999999998887777766554 789999999999986543 34444443 34445678899999999999
Q ss_pred HHHHHHHHHHhh
Q 030524 161 LCCHTLNSLITV 172 (175)
Q Consensus 161 ~~f~~l~~~~~~ 172 (175)
+-|.||.+.+.+
T Consensus 168 eglswlsnn~~~ 179 (180)
T KOG0071|consen 168 EGLSWLSNNLKE 179 (180)
T ss_pred HHHHHHHhhccC
Confidence 999999876543
No 154
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.92 E-value=9.5e-24 Score=152.66 Aligned_cols=154 Identities=16% Similarity=0.109 Sum_probs=103.6
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCCCC-cccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc--------cccccccC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------LIPSYIRD 81 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~ 81 (175)
+|+++|.||+|||||+|+|++..... ...+..+.+... .+...+. .++.+|||||...... .....+.+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~-~i~~~~~-~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRIS-GIHTTGA-SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEE-EEEEcCC-cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 68999999999999999999976532 112222222222 2222222 4689999999653211 13455789
Q ss_pred CcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC-eEEEeccCCCCCHH
Q 030524 82 SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIK 160 (175)
Q Consensus 82 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~ 160 (175)
+|++++|+|++++.+.+ ..++..+.. .+.|+++++||+|+.+.. ........++...+. +++++||++|.|++
T Consensus 80 aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~ 153 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKD-KLLPLIDKYAILEDFKDIVPISALTGDNTS 153 (270)
T ss_pred CCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHH-HHHHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence 99999999999876654 333333322 468999999999985322 122334444444454 89999999999999
Q ss_pred HHHHHHHHHHhh
Q 030524 161 LCCHTLNSLITV 172 (175)
Q Consensus 161 ~~f~~l~~~~~~ 172 (175)
++++++.+.+.+
T Consensus 154 ~L~~~l~~~l~~ 165 (270)
T TIGR00436 154 FLAAFIEVHLPE 165 (270)
T ss_pred HHHHHHHHhCCC
Confidence 999999887643
No 155
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.91 E-value=1.8e-23 Score=164.58 Aligned_cols=158 Identities=18% Similarity=0.198 Sum_probs=117.3
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCC-------CCCccc------ccceeeEEEEEEEE-----CCeEEEEEEEeCCCccc
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDK-------FDNTYQ------ATIGIDFLSKTMYL-----EDRTVRLQLWDTAGQER 70 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~-------~~~~~~------~~~~~~~~~~~~~~-----~~~~~~~~i~D~~G~~~ 70 (175)
-.+|+++|+.++|||||+++|+... ....+. ...++++....+.+ ++..+.+.+|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 3589999999999999999998742 111111 12344444433322 45678999999999999
Q ss_pred ccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC---e
Q 030524 71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV---M 147 (175)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~---~ 147 (175)
|...+..++..+|++|+|+|++++.+.+....|..... .++|+++++||+|+.+.. ......++...+++ .
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~ 156 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASE 156 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcce
Confidence 99999999999999999999998777766666654332 468999999999985422 12233455555665 4
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHhh
Q 030524 148 FIETSAKAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 148 ~~~~s~~~~~~v~~~f~~l~~~~~~ 172 (175)
++++||++|.|+.++|+++.+.+.+
T Consensus 157 vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 157 AILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred EEEeeccCCCCHHHHHHHHHHhCCC
Confidence 8999999999999999999887643
No 156
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.91 E-value=1.6e-23 Score=160.61 Aligned_cols=148 Identities=23% Similarity=0.261 Sum_probs=111.4
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSY 78 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~ 78 (175)
..++|+++|.+|+|||||+|+|++.... ....+..+.+.....+..++ ..+.+|||||..++... ...+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 3589999999999999999999987542 33344444566666666665 46899999997654332 2346
Q ss_pred ccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCC
Q 030524 79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158 (175)
Q Consensus 79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 158 (175)
+.++|++++|+|++++.+++....|.. ..+.|+++|+||+|+.+..... ...+.+++++|+++|.|
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~G 357 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEG 357 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCC
Confidence 789999999999999887765544432 3578999999999986433221 34457899999999999
Q ss_pred HHHHHHHHHHHHh
Q 030524 159 IKLCCHTLNSLIT 171 (175)
Q Consensus 159 v~~~f~~l~~~~~ 171 (175)
++++++++.+.+.
T Consensus 358 I~~L~~~L~~~l~ 370 (449)
T PRK05291 358 IDELREAIKELAF 370 (449)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
No 157
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.91 E-value=3.4e-23 Score=162.43 Aligned_cols=154 Identities=19% Similarity=0.183 Sum_probs=112.4
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
.++.+|+++|++++|||||++++.+..+.....+..+.+.....+..++.. .+.+||||||+.|..++...+..+|++|
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~-~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK-MITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc-EEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 366899999999999999999999877665544445445544455554332 6899999999999999998899999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcC---------CeEEEeccCCCC
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN---------VMFIETSAKAGF 157 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~s~~~~~ 157 (175)
+|+|++++..-+.. .. +......++|+++++||+|+.+. ..++....+...+ .+++++||++|+
T Consensus 164 LVVda~dgv~~qT~-e~---i~~~~~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGe 236 (587)
T TIGR00487 164 LVVAADDGVMPQTI-EA---ISHAKAANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGD 236 (587)
T ss_pred EEEECCCCCCHhHH-HH---HHHHHHcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCC
Confidence 99999864321111 11 22222257999999999998532 2334444433332 479999999999
Q ss_pred CHHHHHHHHHH
Q 030524 158 NIKLCCHTLNS 168 (175)
Q Consensus 158 ~v~~~f~~l~~ 168 (175)
|+.++|+++..
T Consensus 237 GI~eLl~~I~~ 247 (587)
T TIGR00487 237 GIDELLDMILL 247 (587)
T ss_pred ChHHHHHhhhh
Confidence 99999999864
No 158
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.91 E-value=9.4e-24 Score=145.69 Aligned_cols=160 Identities=23% Similarity=0.210 Sum_probs=102.5
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCC----CC---Ccccccceee--EEEEEEE----------ECCeEEEEEEEeCCCccc
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDK----FD---NTYQATIGID--FLSKTMY----------LEDRTVRLQLWDTAGQER 70 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~----~~---~~~~~~~~~~--~~~~~~~----------~~~~~~~~~i~D~~G~~~ 70 (175)
++|+++|++|+|||||+++|+... .. .+..+..+.+ .....+. ..+....+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 589999999999999999999731 11 1111222222 2222222 123357899999999876
Q ss_pred ccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC--CHHHHHHHH-H-----
Q 030524 71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEGEAKS-R----- 142 (175)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~--~~~~~~~~~-~----- 142 (175)
+..........+|++++|+|+++....+....+. +... .+.|+++++||+|+...... ...+..... .
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5443334456789999999998754333322221 1122 25799999999998532211 112222211 1
Q ss_pred -hcCCeEEEeccCCCCCHHHHHHHHHHHHhhh
Q 030524 143 -ELNVMFIETSAKAGFNIKLCCHTLNSLITVC 173 (175)
Q Consensus 143 -~~~~~~~~~s~~~~~~v~~~f~~l~~~~~~~ 173 (175)
..+++++++|+++|+|+++++++|.+.+...
T Consensus 157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~ 188 (192)
T cd01889 157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIVLP 188 (192)
T ss_pred CcCCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence 2357899999999999999999999887654
No 159
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.91 E-value=1.2e-23 Score=140.74 Aligned_cols=140 Identities=18% Similarity=0.222 Sum_probs=98.8
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcc----cccccccccccCCcEEE
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE----RFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~~~~~d~~i 86 (175)
+|+++|.+|+|||||++++.+..... ..+.+. ..... .+||+||.. ++.......+.++|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~--~~~~~v-------~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA--RKTQAV-------EFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC--ccceEE-------EECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 79999999999999999987653111 112211 12221 269999962 22222223368999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC--eEEEeccCCCCCHHHHHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV--MFIETSAKAGFNIKLCCH 164 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~~v~~~f~ 164 (175)
+|+|+++++++. ..|+..+ ..+.|+++++||+|+.+ .......+++.+.++ +++++|+++|+|++++|+
T Consensus 70 ~v~d~~~~~s~~--~~~~~~~----~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~ 140 (158)
T PRK15467 70 YVHGANDPESRL--PAGLLDI----GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD 140 (158)
T ss_pred EEEeCCCccccc--CHHHHhc----cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence 999999887653 2343332 24678999999999853 234566777777775 999999999999999999
Q ss_pred HHHHHHhh
Q 030524 165 TLNSLITV 172 (175)
Q Consensus 165 ~l~~~~~~ 172 (175)
++.+.+..
T Consensus 141 ~l~~~~~~ 148 (158)
T PRK15467 141 YLASLTKQ 148 (158)
T ss_pred HHHHhchh
Confidence 99887643
No 160
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.91 E-value=1.2e-23 Score=134.70 Aligned_cols=166 Identities=23% Similarity=0.500 Sum_probs=142.9
Q ss_pred CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 030524 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (175)
Q Consensus 5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (175)
++.-++||.++|++..|||||+-.++++.+.+++..+.++++..+.+.+.+..+.+.+||.+|++++..+..-..+.+-+
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva 95 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA 95 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence 34457999999999999999999999999888899999999999999999999999999999999999999988899999
Q ss_pred EEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----CCCCHHHHHHHHHhcCCeEEEeccCCCCCH
Q 030524 85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK-----RQVSIEEGEAKSRELNVMFIETSAKAGFNI 159 (175)
Q Consensus 85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 159 (175)
++|+||++.++++..+..|+.+-+..-..-+|+ ++++|.|+.-. .+.....++..|+-.+++.+.||+..+.|+
T Consensus 96 IlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPi-lvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv 174 (205)
T KOG1673|consen 96 ILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPI-LVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINV 174 (205)
T ss_pred EEEEEecCchHHHHHHHHHHHHHhccCCccceE-EeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccH
Confidence 999999999999999999999877654444554 67999996322 222344567778888999999999999999
Q ss_pred HHHHHHHHHHHh
Q 030524 160 KLCCHTLNSLIT 171 (175)
Q Consensus 160 ~~~f~~l~~~~~ 171 (175)
..+|..+..++.
T Consensus 175 ~KIFK~vlAklF 186 (205)
T KOG1673|consen 175 QKIFKIVLAKLF 186 (205)
T ss_pred HHHHHHHHHHHh
Confidence 999998776653
No 161
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.91 E-value=2.2e-23 Score=143.18 Aligned_cols=155 Identities=22% Similarity=0.215 Sum_probs=108.9
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCCCCcccc----------------cceeeEEEEEEEECCeEEEEEEEeCCCccccccc
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQA----------------TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL 74 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 74 (175)
+|+++|.+|+|||||+++|++......... ..+.......... ....+.+||+||+..+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW--PDRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee--CCEEEEEEeCCCcHHHHHH
Confidence 589999999999999999988765433211 1112222222222 2457999999999988888
Q ss_pred ccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCC--HHHHHHHHHh---------
Q 030524 75 IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS--IEEGEAKSRE--------- 143 (175)
Q Consensus 75 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~--~~~~~~~~~~--------- 143 (175)
+..++.++|++++|+|++++.... ...++..+.. .+.|+++++||+|+..+.... ....++....
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQ-TREHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE 154 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHH-HHHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence 889999999999999998765433 2233333332 579999999999986522211 2223333332
Q ss_pred -----cCCeEEEeccCCCCCHHHHHHHHHHHHh
Q 030524 144 -----LNVMFIETSAKAGFNIKLCCHTLNSLIT 171 (175)
Q Consensus 144 -----~~~~~~~~s~~~~~~v~~~f~~l~~~~~ 171 (175)
...+++++|++.|.|+.++|+++.+.+.
T Consensus 155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred hcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 3468999999999999999999988763
No 162
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.91 E-value=3.4e-23 Score=138.17 Aligned_cols=147 Identities=20% Similarity=0.162 Sum_probs=101.3
Q ss_pred EEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc--------cccccccCCc
Q 030524 13 VFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------LIPSYIRDSS 83 (175)
Q Consensus 13 ~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~d 83 (175)
+++|.+|+|||||+++|++.... ....+..+.+........++ ..+.+|||||+..+.. .+...+.++|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 47999999999999999986422 11222333333444444444 5689999999877543 3345678899
Q ss_pred EEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC-eEEEeccCCCCCHHHH
Q 030524 84 VAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKLC 162 (175)
Q Consensus 84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~ 162 (175)
++++|+|..++.+.... ++...... .+.|+++++||+|+.+.... .......+. +++++|+++|.|++++
T Consensus 79 ~ii~v~d~~~~~~~~~~--~~~~~~~~--~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 79 VILFVVDGREGLTPADE--EIAKYLRK--SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL 149 (157)
T ss_pred EEEEEEeccccCCccHH--HHHHHHHh--cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence 99999999876444332 22222222 35999999999998653322 233444666 8899999999999999
Q ss_pred HHHHHHHH
Q 030524 163 CHTLNSLI 170 (175)
Q Consensus 163 f~~l~~~~ 170 (175)
|+++.+.+
T Consensus 150 ~~~l~~~~ 157 (157)
T cd01894 150 LDAILELL 157 (157)
T ss_pred HHHHHhhC
Confidence 99998753
No 163
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=3e-23 Score=160.39 Aligned_cols=158 Identities=22% Similarity=0.236 Sum_probs=111.4
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCcc----------cccccc-
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE----------RFRSLI- 75 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~- 75 (175)
..++|+++|.+|+|||||+++|++.... ....+..+.+.....+..++. .+.+|||||.. .+..+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHHH
Confidence 4689999999999999999999987642 333455555666666666664 46899999952 222222
Q ss_pred cccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC--CHHHHHH-HHHhcCCeEEEec
Q 030524 76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEGEA-KSRELNVMFIETS 152 (175)
Q Consensus 76 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~--~~~~~~~-~~~~~~~~~~~~s 152 (175)
..++.++|++++|+|++++.+++.+. ++..+.. .+.|+++|+||+|+.+.... ...+... +.....++++++|
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S 363 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS 363 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence 23578999999999999988877764 3333332 57899999999998642211 1111221 2222346899999
Q ss_pred cCCCCCHHHHHHHHHHHHh
Q 030524 153 AKAGFNIKLCCHTLNSLIT 171 (175)
Q Consensus 153 ~~~~~~v~~~f~~l~~~~~ 171 (175)
|++|.|++++|..+.+.+.
T Consensus 364 Ak~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 364 AKTGRAVDKLVPALETALE 382 (472)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999987664
No 164
>PRK11058 GTPase HflX; Provisional
Probab=99.91 E-value=5.3e-23 Score=156.24 Aligned_cols=157 Identities=20% Similarity=0.187 Sum_probs=109.1
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccc--cccc------cccccC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF--RSLI------PSYIRD 81 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--~~~~------~~~~~~ 81 (175)
.+|+++|.+|+|||||+|+|++........+..+.+.....+...+.. .+.+|||+|..+. ...+ ...+.+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~-~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVG-ETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCC-eEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 589999999999999999999876543333334445555555555432 5789999997331 1122 233678
Q ss_pred CcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCe-EEEeccCCCCCHH
Q 030524 82 SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM-FIETSAKAGFNIK 160 (175)
Q Consensus 82 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~v~ 160 (175)
+|++++|+|++++.+++.+..|...+......++|+++|+||+|+.+... .... ....+.+ ++.+||++|.|++
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~~~~~v~ISAktG~GId 351 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRID--RDEENKPIRVWLSAQTGAGIP 351 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHHH--HHhcCCCceEEEeCCCCCCHH
Confidence 99999999999998777765544444333335799999999999854211 1111 1123454 5889999999999
Q ss_pred HHHHHHHHHHhh
Q 030524 161 LCCHTLNSLITV 172 (175)
Q Consensus 161 ~~f~~l~~~~~~ 172 (175)
++++++.+.+..
T Consensus 352 eL~e~I~~~l~~ 363 (426)
T PRK11058 352 LLFQALTERLSG 363 (426)
T ss_pred HHHHHHHHHhhh
Confidence 999999987753
No 165
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=2.8e-22 Score=151.63 Aligned_cols=156 Identities=19% Similarity=0.163 Sum_probs=111.2
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCcccc----ccccccc---ccCC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF----RSLIPSY---IRDS 82 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~~~---~~~~ 82 (175)
.|+++|.||||||||+++++..... ..+..+ +.+...-.+..+ ....+.+||+||..+. ..+...+ +.++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfT-Tl~PnlG~v~~~-~~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFT-TLVPNLGVVETD-DGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcc-eeceEEEEEEEe-CCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 7999999999999999999986543 222222 222222223333 1346999999996431 1222333 4569
Q ss_pred cEEEEEEECCCh---hhHHhHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCC
Q 030524 83 SVAVVVYDVASR---QSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF 157 (175)
Q Consensus 83 d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~--~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 157 (175)
+++++|+|+++. ++++....|..++..+.. .+.|.++|+||+|+.+ .....+.+...++.+++++||++++
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~----~~e~l~~l~~~l~~~i~~iSA~tge 313 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE----AEENLEEFKEKLGPKVFPISALTGQ 313 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC----CHHHHHHHHHHhCCcEEEEeCCCCC
Confidence 999999999864 567777777777776543 4789999999999832 2344556666677889999999999
Q ss_pred CHHHHHHHHHHHHhh
Q 030524 158 NIKLCCHTLNSLITV 172 (175)
Q Consensus 158 ~v~~~f~~l~~~~~~ 172 (175)
|++++++++.+.+..
T Consensus 314 GI~eL~~~L~~~l~~ 328 (424)
T PRK12297 314 GLDELLYAVAELLEE 328 (424)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999887643
No 166
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.90 E-value=1e-22 Score=140.82 Aligned_cols=163 Identities=19% Similarity=0.173 Sum_probs=106.2
Q ss_pred CCCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcc----------ccc
Q 030524 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE----------RFR 72 (175)
Q Consensus 3 ~~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~ 72 (175)
++.....++|+++|++|+|||||++++++..+.....++.+.+........ ...+.+|||||.. ++.
T Consensus 18 ~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~ 94 (196)
T PRK00454 18 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQ 94 (196)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHH
Confidence 344556799999999999999999999987644444444333322222222 2578999999942 333
Q ss_pred ccccccccC---CcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC--CHHHHHHHHHhcCCe
Q 030524 73 SLIPSYIRD---SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEGEAKSRELNVM 147 (175)
Q Consensus 73 ~~~~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~--~~~~~~~~~~~~~~~ 147 (175)
.....++.. .+++++++|.+++.+... .++...... .+.|+++++||+|+....+. ..............+
T Consensus 95 ~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~ 170 (196)
T PRK00454 95 KLIEEYLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE--YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDE 170 (196)
T ss_pred HHHHHHHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH--cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCc
Confidence 344445544 467888899876543322 122222222 46889999999998543221 122233444444679
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHhh
Q 030524 148 FIETSAKAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 148 ~~~~s~~~~~~v~~~f~~l~~~~~~ 172 (175)
++++|+++|+|++++|+.|.+.+.+
T Consensus 171 ~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 171 VILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 9999999999999999999877654
No 167
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=1.1e-22 Score=157.25 Aligned_cols=153 Identities=17% Similarity=0.151 Sum_probs=107.4
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCccc--------ccccccccc
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--------FRSLIPSYI 79 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~ 79 (175)
..+|+++|.+|||||||+|+|++.... ....+..+.+........++. .+.+|||||.+. +...+..++
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 368999999999999999999987542 233444444555555555553 588999999752 333456678
Q ss_pred cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC-eEEEeccCCCCC
Q 030524 80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFN 158 (175)
Q Consensus 80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~ 158 (175)
.++|++|+|+|++++.++.. ..+...+.. .++|+++|+||+|+.... ....+.+ ..+. ..+++||++|.|
T Consensus 116 ~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~--~~g~~~~~~iSA~~g~g 186 (472)
T PRK03003 116 RTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALW--SLGLGEPHPVSALHGRG 186 (472)
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHH--hcCCCCeEEEEcCCCCC
Confidence 89999999999998765432 233333332 479999999999985321 1122222 2343 347999999999
Q ss_pred HHHHHHHHHHHHhh
Q 030524 159 IKLCCHTLNSLITV 172 (175)
Q Consensus 159 v~~~f~~l~~~~~~ 172 (175)
+.++|+++.+.+..
T Consensus 187 i~eL~~~i~~~l~~ 200 (472)
T PRK03003 187 VGDLLDAVLAALPE 200 (472)
T ss_pred cHHHHHHHHhhccc
Confidence 99999999887643
No 168
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.90 E-value=4.4e-24 Score=135.40 Aligned_cols=154 Identities=25% Similarity=0.369 Sum_probs=127.2
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (175)
...+.++|-.+||||||+|....+.+.....|+.+++.+..+ ...+.+.+||.+|+..|+.+|..|.+.+++++||
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~t----kgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEec----cCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 578999999999999999998888888888999987655443 3456899999999999999999999999999999
Q ss_pred EECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcC--------CeEEEeccCCCCCH
Q 030524 89 YDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN--------VMFIETSAKAGFNI 159 (175)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~s~~~~~~v 159 (175)
+|+.+++.+...+..+..+..... .++|+++++||.|+..+. .. +.+..+.| +..|.+|+++..++
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL--~~---~~li~rmgL~sitdREvcC~siScke~~Ni 170 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGAL--SK---IALIERMGLSSITDREVCCFSISCKEKVNI 170 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccc--cH---HHHHHHhCccccccceEEEEEEEEcCCccH
Confidence 999999988888887777765543 789999999999975432 22 22333333 45789999999999
Q ss_pred HHHHHHHHHHHh
Q 030524 160 KLCCHTLNSLIT 171 (175)
Q Consensus 160 ~~~f~~l~~~~~ 171 (175)
+-..+||++...
T Consensus 171 d~~~~Wli~hsk 182 (186)
T KOG0075|consen 171 DITLDWLIEHSK 182 (186)
T ss_pred HHHHHHHHHHhh
Confidence 999999988643
No 169
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.90 E-value=6.5e-22 Score=133.84 Aligned_cols=155 Identities=21% Similarity=0.237 Sum_probs=103.0
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc-----------ccc
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-----------LIP 76 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~~~ 76 (175)
+++|+++|++|+|||||++++++.... ....+..+..........++. .+.+||+||..+... ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence 589999999999999999999986532 222222322333334444443 478999999653311 112
Q ss_pred ccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHH-HHHHHhc----CCeEEEe
Q 030524 77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEG-EAKSREL----NVMFIET 151 (175)
Q Consensus 77 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~-~~~~~~~----~~~~~~~ 151 (175)
..+.++|++++|+|++++.+..... ++.... ..+.|+++++||+|+.+......+.. ....+.. +.+++++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~---~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLR-IAGLIL---EEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHH---hcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence 3457899999999999887655432 222222 24689999999999865432222222 2222333 3689999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 030524 152 SAKAGFNIKLCCHTLNSL 169 (175)
Q Consensus 152 s~~~~~~v~~~f~~l~~~ 169 (175)
|+++++|+.++++++.+.
T Consensus 156 Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 156 SALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eccCCCCHHHHHHHHHHh
Confidence 999999999999998764
No 170
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.90 E-value=2.4e-22 Score=135.03 Aligned_cols=157 Identities=17% Similarity=0.146 Sum_probs=103.4
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc--------cccccc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------LIPSYI 79 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~ 79 (175)
...+|+++|++|+|||||++++++.............. .............+.+||+||...... .....+
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTR-NRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL 80 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCcee-ceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence 46789999999999999999999875432211111111 111112223346789999999654322 234457
Q ss_pred cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcC-CeEEEeccCCCCC
Q 030524 80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKAGFN 158 (175)
Q Consensus 80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~ 158 (175)
.++|++++|+|++++.+. ....+...+.. .+.|+++++||+|+.............+....+ .+++++|++++.+
T Consensus 81 ~~~d~i~~v~d~~~~~~~-~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 156 (168)
T cd04163 81 KDVDLVLFVVDASEPIGE-GDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGEN 156 (168)
T ss_pred HhCCEEEEEEECCCccCc-hHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCC
Confidence 889999999999987211 12222233322 268999999999986433333334444444443 6899999999999
Q ss_pred HHHHHHHHHHH
Q 030524 159 IKLCCHTLNSL 169 (175)
Q Consensus 159 v~~~f~~l~~~ 169 (175)
++++|++|.+.
T Consensus 157 ~~~l~~~l~~~ 167 (168)
T cd04163 157 VDELLEEIVKY 167 (168)
T ss_pred hHHHHHHHHhh
Confidence 99999998775
No 171
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.3e-23 Score=136.90 Aligned_cols=166 Identities=20% Similarity=0.281 Sum_probs=127.3
Q ss_pred CCCCCceeEEEECCCCCCHHHHHHHHhcCC------C-CCcccccceeeEEEEEEEECCeEEEEEEEeCCCccccccccc
Q 030524 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDK------F-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP 76 (175)
Q Consensus 4 ~~~~~~~~i~l~G~~~~GKSsli~~l~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 76 (175)
|.....+.|+++|+.++|||||+.++.... . .....++.+....... +. ...+.+||..|++..+++|.
T Consensus 12 ~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~--v~--~~~l~fwdlgGQe~lrSlw~ 87 (197)
T KOG0076|consen 12 MFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIE--VC--NAPLSFWDLGGQESLRSLWK 87 (197)
T ss_pred HhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeeccee--ec--cceeEEEEcCChHHHHHHHH
Confidence 344567899999999999999999875432 1 1233445554443333 33 35799999999999999999
Q ss_pred ccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCC-HHHHH---HHHHhcCCeEEEe
Q 030524 77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVS-IEEGE---AKSRELNVMFIET 151 (175)
Q Consensus 77 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~-~~~~~---~~~~~~~~~~~~~ 151 (175)
.||..+|++|+++|++|++.|+.....++.+..+.. .++|+++.+||.|+.+..++. .+... ....+..+++.++
T Consensus 88 ~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pv 167 (197)
T KOG0076|consen 88 KYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPV 167 (197)
T ss_pred HHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccc
Confidence 999999999999999999999998888888777665 799999999999986543322 11111 2223345799999
Q ss_pred ccCCCCCHHHHHHHHHHHHhhh
Q 030524 152 SAKAGFNIKLCCHTLNSLITVC 173 (175)
Q Consensus 152 s~~~~~~v~~~f~~l~~~~~~~ 173 (175)
|+..|+|+++...|+...+..+
T Consensus 168 Sal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 168 SALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhhcccHHHHHHHHHHHHhhc
Confidence 9999999999999999887765
No 172
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.90 E-value=6.5e-22 Score=151.86 Aligned_cols=157 Identities=19% Similarity=0.201 Sum_probs=107.2
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccc-----------
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI----------- 75 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----------- 75 (175)
..++|+++|.+|+|||||+++|++.... ....+..+.+.....+..++. .+.+|||||..++....
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHHH
Confidence 4589999999999999999999986532 222333334444444445543 68999999975543321
Q ss_pred cccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHH-Hh----cCCeEEE
Q 030524 76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-RE----LNVMFIE 150 (175)
Q Consensus 76 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~-~~----~~~~~~~ 150 (175)
..++..+|++|+|+|++++.+.+... ++..+.. .+.|+++++||+|+.+. .....+..... .. .++++++
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~vi~ 323 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVKD-EKTREEFKKELRRKLPFLDFAPIVF 323 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCCC-HHHHHHHHHHHHHhcccCCCCceEE
Confidence 23578999999999999886665543 2222222 46899999999998621 11112222121 12 2479999
Q ss_pred eccCCCCCHHHHHHHHHHHHh
Q 030524 151 TSAKAGFNIKLCCHTLNSLIT 171 (175)
Q Consensus 151 ~s~~~~~~v~~~f~~l~~~~~ 171 (175)
+||++|.|+.++|+++.+.+.
T Consensus 324 ~SA~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 324 ISALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred EeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999887654
No 173
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.90 E-value=2e-22 Score=158.65 Aligned_cols=156 Identities=21% Similarity=0.186 Sum_probs=113.4
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCC---CCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDK---FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
+.|+++|++++|||||+++|.+.. +..++.+..+.+.....+..++ ..+.+||+||+++|...+...+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 468999999999999999999733 3344455556665555555555 67999999999999988888899999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCC--CHHHHHHHHHhc----CCeEEEeccCCCCCH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQV--SIEEGEAKSREL----NVMFIETSAKAGFNI 159 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nk~D~~~~~~~--~~~~~~~~~~~~----~~~~~~~s~~~~~~v 159 (175)
+|+|++++.. .....++..+ .. .++| +++++||+|+.+.... ...+...++... +++++++|+++|+|+
T Consensus 79 LVVDa~~G~~-~qT~ehl~il-~~--lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI 154 (581)
T TIGR00475 79 LVVDADEGVM-TQTGEHLAVL-DL--LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGI 154 (581)
T ss_pred EEEECCCCCc-HHHHHHHHHH-HH--cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCc
Confidence 9999987321 1122222222 22 3577 9999999998654322 123444555544 578999999999999
Q ss_pred HHHHHHHHHHHh
Q 030524 160 KLCCHTLNSLIT 171 (175)
Q Consensus 160 ~~~f~~l~~~~~ 171 (175)
.+++..+.+.+.
T Consensus 155 ~eL~~~L~~l~~ 166 (581)
T TIGR00475 155 GELKKELKNLLE 166 (581)
T ss_pred hhHHHHHHHHHH
Confidence 999998876553
No 174
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.90 E-value=1.6e-22 Score=140.63 Aligned_cols=161 Identities=18% Similarity=0.180 Sum_probs=101.9
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCC---CCcccccceeeEE--EEEEE-----------------------EC--C----
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKF---DNTYQATIGIDFL--SKTMY-----------------------LE--D---- 55 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~--~~~~~-----------------------~~--~---- 55 (175)
++|+++|+.|+|||||+..+.+... ..+.....+.... ..... .. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999976421 1111111111111 00000 00 1
Q ss_pred eEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC--C
Q 030524 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--S 133 (175)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~--~ 133 (175)
....+.||||||++.+...+...+.++|++++|+|++++.........+..+.. . ...|+++++||+|+.+.... .
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~-~~~~iiivvNK~Dl~~~~~~~~~ 158 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEI-M-GLKHIIIVQNKIDLVKEEQALEN 158 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHH-c-CCCcEEEEEEchhccCHHHHHHH
Confidence 125789999999998888887788899999999999874211112222222222 1 22478899999998642211 1
Q ss_pred HHHHHHHHHhc---CCeEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524 134 IEEGEAKSREL---NVMFIETSAKAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 134 ~~~~~~~~~~~---~~~~~~~s~~~~~~v~~~f~~l~~~~~~ 172 (175)
.++.+.+.... +++++++||++|+|++++|+++.+.+..
T Consensus 159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 12333333332 5789999999999999999999886643
No 175
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.89 E-value=2.3e-22 Score=160.09 Aligned_cols=157 Identities=18% Similarity=0.220 Sum_probs=111.5
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceee--EEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGID--FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (175)
.+..+|+++|++++|||||+++|..........+..+.+ .+...+..++....+.||||||++.|..++..++..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 356899999999999999999999876554433333322 233333334456789999999999999999999999999
Q ss_pred EEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHH-------HHhcC--CeEEEeccCC
Q 030524 85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAK-------SRELN--VMFIETSAKA 155 (175)
Q Consensus 85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~-------~~~~~--~~~~~~s~~~ 155 (175)
+|+|+|++++...+.... +..+ ...++|+++++||+|+.+.. .+..... ...++ ++++++||++
T Consensus 322 aILVVDA~dGv~~QT~E~-I~~~---k~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSAkt 394 (742)
T CHL00189 322 AILIIAADDGVKPQTIEA-INYI---QAANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISASQ 394 (742)
T ss_pred EEEEEECcCCCChhhHHH-HHHH---HhcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEECCC
Confidence 999999987532222211 1222 22579999999999986422 2222222 22233 6899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 030524 156 GFNIKLCCHTLNSLI 170 (175)
Q Consensus 156 ~~~v~~~f~~l~~~~ 170 (175)
|.|+.++|+++....
T Consensus 395 G~GIdeLle~I~~l~ 409 (742)
T CHL00189 395 GTNIDKLLETILLLA 409 (742)
T ss_pred CCCHHHHHHhhhhhh
Confidence 999999999987653
No 176
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=6.9e-23 Score=135.26 Aligned_cols=163 Identities=30% Similarity=0.524 Sum_probs=144.1
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (175)
....++++++|..|.|||++..+.+.+.+...+.++.++..+......+...+++..|||+|++.+..+...|+-+..+.
T Consensus 7 ~~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcA 86 (216)
T KOG0096|consen 7 QGLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCA 86 (216)
T ss_pred ccceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEeccee
Confidence 34579999999999999999999999999999999999988887776665678999999999999999999999999999
Q ss_pred EEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHH
Q 030524 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHT 165 (175)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~ 165 (175)
|++||++.+-++.++.+|...+.+.+. ++|+++++||.|..... .......+.+..++.+++.|++++-|.+.-|.|
T Consensus 87 iimFdVtsr~t~~n~~rwhrd~~rv~~-NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~ 163 (216)
T KOG0096|consen 87 IIMFDVTSRFTYKNVPRWHRDLVRVRE-NIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLW 163 (216)
T ss_pred EEEeeeeehhhhhcchHHHHHHHHHhc-CCCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchHH
Confidence 999999999999999999999998885 59999999999974332 233455567777899999999999999999999
Q ss_pred HHHHHh
Q 030524 166 LNSLIT 171 (175)
Q Consensus 166 l~~~~~ 171 (175)
+.+++.
T Consensus 164 LarKl~ 169 (216)
T KOG0096|consen 164 LARKLT 169 (216)
T ss_pred Hhhhhc
Confidence 988764
No 177
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.89 E-value=4.7e-22 Score=159.61 Aligned_cols=153 Identities=16% Similarity=0.176 Sum_probs=110.9
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
.++..|+++|+.++|||||+++|....+........+.+.....+..++ ..+.|||||||+.|..++...+..+|++|
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaI 365 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVV 365 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence 4678999999999999999999988766554444444444444444554 56899999999999999998899999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHH-------HHHhcC--CeEEEeccCCCC
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEA-------KSRELN--VMFIETSAKAGF 157 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~-------~~~~~~--~~~~~~s~~~~~ 157 (175)
+|+|++++..-+.. ..+......++|+++++||+|+.+.. ...... ++..++ ++++++||++|.
T Consensus 366 LVVdAddGv~~qT~----e~i~~a~~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~ 438 (787)
T PRK05306 366 LVVAADDGVMPQTI----EAINHAKAAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGE 438 (787)
T ss_pred EEEECCCCCCHhHH----HHHHHHHhcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeCCCCC
Confidence 99999874221111 12222222579999999999985421 222211 122333 689999999999
Q ss_pred CHHHHHHHHHH
Q 030524 158 NIKLCCHTLNS 168 (175)
Q Consensus 158 ~v~~~f~~l~~ 168 (175)
|+.++|++|..
T Consensus 439 GI~eLle~I~~ 449 (787)
T PRK05306 439 GIDELLEAILL 449 (787)
T ss_pred CchHHHHhhhh
Confidence 99999999864
No 178
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=4e-22 Score=152.62 Aligned_cols=161 Identities=18% Similarity=0.099 Sum_probs=107.4
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccc----cc---cccccccC
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF----RS---LIPSYIRD 81 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~---~~~~~~~~ 81 (175)
-..|+|+|.||||||||+++|..........+..+.....-.+...+ ..+.+||+||..+. .. ..-..+.+
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier 236 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER 236 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence 36799999999999999999998654322222222333333333444 47999999995321 11 11223678
Q ss_pred CcEEEEEEECCCh----hhHHhHHHHHHHHHHhc-----------CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC
Q 030524 82 SSVAVVVYDVASR----QSFLNTSKWIDEVRTER-----------GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV 146 (175)
Q Consensus 82 ~d~~i~v~d~~~~----~~~~~~~~~~~~~~~~~-----------~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~ 146 (175)
+|++|+|+|+++. +.++.+..+..++..+. ..+.|.++|+||+|+.+.... .+.........++
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g~ 315 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEARGW 315 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHcCC
Confidence 9999999999852 34545555544554432 146899999999998643321 2223333445678
Q ss_pred eEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524 147 MFIETSAKAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 147 ~~~~~s~~~~~~v~~~f~~l~~~~~~ 172 (175)
+++++|+++++|+++++.+|.+.+..
T Consensus 316 ~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 316 PVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999887643
No 179
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.89 E-value=5.5e-22 Score=137.80 Aligned_cols=117 Identities=20% Similarity=0.361 Sum_probs=90.4
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCC-cEEEEEE
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS-SVAVVVY 89 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~-d~~i~v~ 89 (175)
+|+++|++|||||+|+++|..+.+...+.++. ...........+....+.+||+||+.+++..+..+++++ +++|||+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~-~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIE-PNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEe-ecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 68999999999999999999887665544432 222222222223456799999999999999998999999 9999999
Q ss_pred ECCCh-hhHHhHHHHHHHHHHhc---CCCCcEEEEEeCCCCCC
Q 030524 90 DVASR-QSFLNTSKWIDEVRTER---GSDVIIVLVGNKTDLVE 128 (175)
Q Consensus 90 d~~~~-~~~~~~~~~~~~~~~~~---~~~~~~iiv~nk~D~~~ 128 (175)
|+++. .++.....|+..+.... ..++|+++++||+|+..
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 99987 67888777776664432 26899999999999854
No 180
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.89 E-value=2.5e-22 Score=137.11 Aligned_cols=151 Identities=19% Similarity=0.233 Sum_probs=98.1
Q ss_pred CCCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcc----------ccc
Q 030524 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE----------RFR 72 (175)
Q Consensus 3 ~~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~ 72 (175)
+++.....+|+++|++|+|||||++++++........++.+.+........++ .+.+||+||.. .+.
T Consensus 12 ~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~ 88 (179)
T TIGR03598 12 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQ 88 (179)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHH
Confidence 45566789999999999999999999998753333333333233222233332 58999999953 233
Q ss_pred cccccccc---CCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC--CCCHHHHHHHHHhcC--
Q 030524 73 SLIPSYIR---DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR--QVSIEEGEAKSRELN-- 145 (175)
Q Consensus 73 ~~~~~~~~---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~--~~~~~~~~~~~~~~~-- 145 (175)
.+...+++ .+|++++|+|++++.+..... .+..+. . .++|+++++||+|+..+. .....+.+......+
T Consensus 89 ~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~-~--~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~ 164 (179)
T TIGR03598 89 KLIEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLR-E--RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADD 164 (179)
T ss_pred HHHHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHH-H--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCC
Confidence 33344554 358999999998764444432 222222 2 468999999999985432 122344445555544
Q ss_pred CeEEEeccCCCCCHH
Q 030524 146 VMFIETSAKAGFNIK 160 (175)
Q Consensus 146 ~~~~~~s~~~~~~v~ 160 (175)
++++++||++|+|++
T Consensus 165 ~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 165 PSVQLFSSLKKTGID 179 (179)
T ss_pred CceEEEECCCCCCCC
Confidence 489999999999973
No 181
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=8.9e-22 Score=148.05 Aligned_cols=160 Identities=19% Similarity=0.159 Sum_probs=110.2
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccccc-------ccccccccCCc
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-------SLIPSYIRDSS 83 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d 83 (175)
.|+|+|.||||||||+|+|++........+..+.....-.+...+ ...+.++|+||..+-. ......+..+|
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 799999999999999999998654322222222232222333332 2358999999964311 11223478899
Q ss_pred EEEEEEECC---ChhhHHhHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcC--CeEEEeccCCC
Q 030524 84 VAVVVYDVA---SRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN--VMFIETSAKAG 156 (175)
Q Consensus 84 ~~i~v~d~~---~~~~~~~~~~~~~~~~~~~~--~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~ 156 (175)
++++|+|++ +.+.++....|++++..+.. .+.|+++|+||+|+...... ......+....+ .+++.+||+++
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~tg 318 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAASG 318 (390)
T ss_pred EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCCC
Confidence 999999998 45667777777777776532 46899999999998643322 233444444444 47899999999
Q ss_pred CCHHHHHHHHHHHHhh
Q 030524 157 FNIKLCCHTLNSLITV 172 (175)
Q Consensus 157 ~~v~~~f~~l~~~~~~ 172 (175)
.|++++++.|.+.+..
T Consensus 319 ~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 319 LGVKELCWDLMTFIEE 334 (390)
T ss_pred cCHHHHHHHHHHHhhh
Confidence 9999999999887753
No 182
>PRK00089 era GTPase Era; Reviewed
Probab=99.89 E-value=5.2e-22 Score=145.28 Aligned_cols=159 Identities=18% Similarity=0.195 Sum_probs=103.9
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccccc--------ccccccc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR--------SLIPSYI 79 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~ 79 (175)
+.-.|+++|+||||||||+|+|++...........+.......+... ....+.+|||||..... ......+
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~ 82 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL 82 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence 45679999999999999999999876542211111111111122222 22679999999964322 2233457
Q ss_pred cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcC-CeEEEeccCCCCC
Q 030524 80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKAGFN 158 (175)
Q Consensus 80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~ 158 (175)
.++|++++|+|++++. .....++..... ..+.|+++++||+|+.............+....+ .+++++||+++.|
T Consensus 83 ~~~D~il~vvd~~~~~--~~~~~~i~~~l~--~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~g 158 (292)
T PRK00089 83 KDVDLVLFVVDADEKI--GPGDEFILEKLK--KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDN 158 (292)
T ss_pred hcCCEEEEEEeCCCCC--ChhHHHHHHHHh--hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCC
Confidence 8999999999998732 222222222222 2368999999999986433333334444444444 5899999999999
Q ss_pred HHHHHHHHHHHHh
Q 030524 159 IKLCCHTLNSLIT 171 (175)
Q Consensus 159 v~~~f~~l~~~~~ 171 (175)
+.++++++.+.+.
T Consensus 159 v~~L~~~L~~~l~ 171 (292)
T PRK00089 159 VDELLDVIAKYLP 171 (292)
T ss_pred HHHHHHHHHHhCC
Confidence 9999999988764
No 183
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.89 E-value=7.6e-22 Score=155.63 Aligned_cols=160 Identities=18% Similarity=0.197 Sum_probs=114.4
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCC--CCC-----cc------cccceeeEEEEEEEE-----CCeEEEEEEEeCCCc
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDK--FDN-----TY------QATIGIDFLSKTMYL-----EDRTVRLQLWDTAGQ 68 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~--~~~-----~~------~~~~~~~~~~~~~~~-----~~~~~~~~i~D~~G~ 68 (175)
.+-.+|+++|+.++|||||+++|+... ... .+ ....+++.....+.. ++..+.+.+|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 345689999999999999999998632 110 00 112333333222222 556789999999999
Q ss_pred ccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCe-
Q 030524 69 ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM- 147 (175)
Q Consensus 69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~- 147 (175)
.+|...+..++..+|++|+|+|++++...+....|.... ..++|+++++||+|+.+.. ......++...+++.
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~ 158 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAAD--PERVKQEIEDVIGIDA 158 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCccc--HHHHHHHHHHHhCCCc
Confidence 999999999999999999999999876655555554322 2478999999999985432 122233444445553
Q ss_pred --EEEeccCCCCCHHHHHHHHHHHHhh
Q 030524 148 --FIETSAKAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 148 --~~~~s~~~~~~v~~~f~~l~~~~~~ 172 (175)
++++||++|.|+.+++++|.+.+.+
T Consensus 159 ~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 159 SDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred ceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 8999999999999999999887643
No 184
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.89 E-value=7e-22 Score=155.72 Aligned_cols=145 Identities=16% Similarity=0.204 Sum_probs=108.7
Q ss_pred CCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccccccc------ccccc--cCCcEEEE
Q 030524 16 GDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL------IPSYI--RDSSVAVV 87 (175)
Q Consensus 16 G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~d~~i~ 87 (175)
|++|+|||||+|++.+........+..+.+.....+..++. ++.+||+||+.++... .+.++ .++|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 89999999999999988765555566666666666666553 5899999998776543 33333 37899999
Q ss_pred EEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLN 167 (175)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~ 167 (175)
|+|.++.+.. ..+..++. ..++|+++++||+|+.+.+... .+.+.+.+..+++++++||++|+|++++|+++.
T Consensus 79 VvDat~ler~---l~l~~ql~---~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 79 VVDASNLERN---LYLTLQLL---ELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred EecCCcchhh---HHHHHHHH---hcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 9999875321 22222222 2579999999999986554444 346778888999999999999999999999987
Q ss_pred HH
Q 030524 168 SL 169 (175)
Q Consensus 168 ~~ 169 (175)
+.
T Consensus 152 ~~ 153 (591)
T TIGR00437 152 KA 153 (591)
T ss_pred HH
Confidence 65
No 185
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=1.8e-21 Score=149.61 Aligned_cols=146 Identities=19% Similarity=0.154 Sum_probs=103.6
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCccc--------cccccccccc
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--------FRSLIPSYIR 80 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~ 80 (175)
.+|+++|.+|||||||+|+|++.... ....+..+.+........++ ..+.+|||||... +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 57999999999999999999987642 22233344455555555665 6799999999876 2233455678
Q ss_pred CCcEEEEEEECCChhhHH--hHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC-eEEEeccCCCC
Q 030524 81 DSSVAVVVYDVASRQSFL--NTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGF 157 (175)
Q Consensus 81 ~~d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~ 157 (175)
++|++++|+|+.++.+.. .+..|+. . .+.|+++++||+|..+. .....+ ...+++ .++++||.+|.
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~----~--~~~piilv~NK~D~~~~----~~~~~~-~~~lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILR----K--SNKPVILVVNKVDGPDE----EADAYE-FYSLGLGEPYPISAEHGR 148 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHH----H--cCCcEEEEEECccCccc----hhhHHH-HHhcCCCCCEEEEeeCCC
Confidence 999999999998753332 2333333 2 26899999999996431 112222 245566 48999999999
Q ss_pred CHHHHHHHHHH
Q 030524 158 NIKLCCHTLNS 168 (175)
Q Consensus 158 ~v~~~f~~l~~ 168 (175)
|+.++|+.+.+
T Consensus 149 gv~~l~~~I~~ 159 (435)
T PRK00093 149 GIGDLLDAILE 159 (435)
T ss_pred CHHHHHHHHHh
Confidence 99999999876
No 186
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.88 E-value=1.5e-21 Score=130.08 Aligned_cols=151 Identities=19% Similarity=0.148 Sum_probs=103.8
Q ss_pred EECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCccccccc-------ccccccCCcEE
Q 030524 14 FLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-------IPSYIRDSSVA 85 (175)
Q Consensus 14 l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~~~~~d~~ 85 (175)
++|++|+|||||++++.+.... .......+............ ...+.+||+||...+... +..++..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999986544 22233333233333332221 457999999997665433 33477899999
Q ss_pred EEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHH---HHHHHHHhcCCeEEEeccCCCCCHHHH
Q 030524 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIE---EGEAKSRELNVMFIETSAKAGFNIKLC 162 (175)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~---~~~~~~~~~~~~~~~~s~~~~~~v~~~ 162 (175)
++++|..++....... +..... ..+.|+++++||+|+......... .........+++++++|++++.|+.++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 9999999886665544 222222 257999999999998654433222 122333444679999999999999999
Q ss_pred HHHHHHH
Q 030524 163 CHTLNSL 169 (175)
Q Consensus 163 f~~l~~~ 169 (175)
++++.+.
T Consensus 156 ~~~l~~~ 162 (163)
T cd00880 156 REALIEA 162 (163)
T ss_pred HHHHHhh
Confidence 9998875
No 187
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.88 E-value=2.5e-22 Score=138.10 Aligned_cols=159 Identities=25% Similarity=0.272 Sum_probs=106.2
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCc------------------ccccceeeEEEEEEEECCeEEEEEEEeCCCcc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNT------------------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 69 (175)
+.++|+++|+.++|||||+++|+....... .....+.+..............+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 458999999999999999999986432110 01111222222222212444679999999999
Q ss_pred cccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC-CHHHHH-HHHHhc---
Q 030524 70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-SIEEGE-AKSREL--- 144 (175)
Q Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~-~~~~~~-~~~~~~--- 144 (175)
+|...+...+..+|++|+|+|+.++...+ ....+..+.. .++|+++++||+|+...+.. ...+.. .+.+..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~---~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~ 157 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILRE---LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN 157 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHH---TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred ceeecccceecccccceeeeecccccccc-cccccccccc---cccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence 99988888899999999999998663322 2333333332 46889999999998621110 011111 333333
Q ss_pred ---CCeEEEeccCCCCCHHHHHHHHHHHH
Q 030524 145 ---NVMFIETSAKAGFNIKLCCHTLNSLI 170 (175)
Q Consensus 145 ---~~~~~~~s~~~~~~v~~~f~~l~~~~ 170 (175)
.++++++|+.+|.|+.++++.+.+.+
T Consensus 158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 158 GEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp TTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred ccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 25899999999999999999998865
No 188
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.87 E-value=7.4e-21 Score=153.24 Aligned_cols=154 Identities=17% Similarity=0.189 Sum_probs=111.3
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccccccc----------ccc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL----------IPS 77 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------~~~ 77 (175)
+.++|+++|+||+|||||+|++.+........+..++ ..+.........++.+||+||..++... ...
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTv--e~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTV--ERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceE--eeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHH
Confidence 3578999999999999999999987554333333333 3333334445567999999998765432 222
Q ss_pred cc--cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCC
Q 030524 78 YI--RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA 155 (175)
Q Consensus 78 ~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 155 (175)
++ ..+|++++|+|+++.++-.. +..++.. .++|+++++||+|+.+.+.. ..+.+++.+.++++++++|++.
T Consensus 80 ~l~~~~aD~vI~VvDat~ler~l~---l~~ql~e---~giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~ 152 (772)
T PRK09554 80 YILSGDADLLINVVDASNLERNLY---LTLQLLE---LGIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTR 152 (772)
T ss_pred HHhccCCCEEEEEecCCcchhhHH---HHHHHHH---cCCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeec
Confidence 32 47899999999998654322 3333332 46999999999998654444 3456778888999999999999
Q ss_pred CCCHHHHHHHHHHHH
Q 030524 156 GFNIKLCCHTLNSLI 170 (175)
Q Consensus 156 ~~~v~~~f~~l~~~~ 170 (175)
|+|++++.+.+.+..
T Consensus 153 g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 153 GRGIEALKLAIDRHQ 167 (772)
T ss_pred CCCHHHHHHHHHHhh
Confidence 999999999887653
No 189
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.87 E-value=1.4e-21 Score=149.63 Aligned_cols=158 Identities=17% Similarity=0.184 Sum_probs=102.6
Q ss_pred CCCCceeEEEECCCCCCHHHHHHHHhcCCCC--Cc---------------------------ccccceeeEEEEEEEECC
Q 030524 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFD--NT---------------------------YQATIGIDFLSKTMYLED 55 (175)
Q Consensus 5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~ 55 (175)
+....++|+++|++++|||||+++|+...-. .. .....+.+.......++.
T Consensus 2 ~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~ 81 (425)
T PRK12317 2 KEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET 81 (425)
T ss_pred CCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec
Confidence 4566799999999999999999999853211 00 000222333333334444
Q ss_pred eEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC----
Q 030524 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ---- 131 (175)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~---- 131 (175)
..+.+.+|||||+++|...+...+.++|++++|+|++++.++.....+...+....+ ..|+++++||+|+.+...
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~-~~~iivviNK~Dl~~~~~~~~~ 160 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG-INQLIVAINKMDAVNYDEKRYE 160 (425)
T ss_pred CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC-CCeEEEEEEccccccccHHHHH
Confidence 557899999999988877666667899999999999873233232222222222222 246899999999864221
Q ss_pred CCHHHHHHHHHhcC-----CeEEEeccCCCCCHHHHH
Q 030524 132 VSIEEGEAKSRELN-----VMFIETSAKAGFNIKLCC 163 (175)
Q Consensus 132 ~~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~~f 163 (175)
....+...++...+ ++++++||++|+|+.+.+
T Consensus 161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 11234455555554 579999999999998744
No 190
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.87 E-value=6.5e-24 Score=139.74 Aligned_cols=166 Identities=36% Similarity=0.551 Sum_probs=145.5
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCe-EEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR-TVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
.-+++.++|..|+|||+++.+++.+.+...|..++++++..+....+.. .+++.+||..|+++|..+..-|++.+++.+
T Consensus 24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~ 103 (229)
T KOG4423|consen 24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAF 103 (229)
T ss_pred hhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceE
Confidence 4589999999999999999999999999999999999988887766554 467899999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhc----CCCCcEEEEEeCCCCCCCCCC-CHHHHHHHHHhcCC-eEEEeccCCCCCHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTER----GSDVIIVLVGNKTDLVEKRQV-SIEEGEAKSRELNV-MFIETSAKAGFNIK 160 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~----~~~~~~iiv~nk~D~~~~~~~-~~~~~~~~~~~~~~-~~~~~s~~~~~~v~ 160 (175)
+|||+++..+|+.+.+|.+.+.... +.++|+++.+||||....... ......++.+++|. .++++|++.+.++.
T Consensus 104 iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni~ 183 (229)
T KOG4423|consen 104 IVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNIP 183 (229)
T ss_pred EEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccChh
Confidence 9999999999999999999986653 256889999999997543222 25677888999997 89999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030524 161 LCCHTLNSLITVC 173 (175)
Q Consensus 161 ~~f~~l~~~~~~~ 173 (175)
|.-..+++.++.+
T Consensus 184 Ea~r~lVe~~lvn 196 (229)
T KOG4423|consen 184 EAQRELVEKILVN 196 (229)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988765
No 191
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.87 E-value=1.1e-20 Score=145.15 Aligned_cols=148 Identities=22% Similarity=0.231 Sum_probs=105.0
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCc--------ccccccccccccC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ--------ERFRSLIPSYIRD 81 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~~~~~~~ 81 (175)
+|+++|.+|||||||+|+|++.... ....+..+.+........++ ..+.+|||||. +.+......++++
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 5899999999999999999987632 22233344444455555555 35999999996 3344456667889
Q ss_pred CcEEEEEEECCChhhHHh--HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC-eEEEeccCCCCC
Q 030524 82 SSVAVVVYDVASRQSFLN--TSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFN 158 (175)
Q Consensus 82 ~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~ 158 (175)
+|++++|+|..++.+... +..|+. . .+.|+++|+||+|+...... . .....+++ +++++||..|.|
T Consensus 79 ad~vl~vvD~~~~~~~~d~~i~~~l~----~--~~~piilVvNK~D~~~~~~~----~-~~~~~lg~~~~~~vSa~~g~g 147 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDEEIAKWLR----K--SGKPVILVANKIDGKKEDAV----A-AEFYSLGFGEPIPISAEHGRG 147 (429)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHH----H--hCCCEEEEEECccCCccccc----H-HHHHhcCCCCeEEEeCCcCCC
Confidence 999999999987533322 233322 2 36899999999997543321 1 22345676 799999999999
Q ss_pred HHHHHHHHHHHHh
Q 030524 159 IKLCCHTLNSLIT 171 (175)
Q Consensus 159 v~~~f~~l~~~~~ 171 (175)
+.++++++.+.+.
T Consensus 148 v~~ll~~i~~~l~ 160 (429)
T TIGR03594 148 IGDLLDAILELLP 160 (429)
T ss_pred hHHHHHHHHHhcC
Confidence 9999999887763
No 192
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.86 E-value=2.4e-21 Score=122.32 Aligned_cols=160 Identities=21% Similarity=0.276 Sum_probs=123.8
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (175)
..+.++|+++|-.++||||++..|.+-. .....++.++....... + ..+.+.+||.+|+...+..|..|+.+.|++
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED-~~hltpT~GFn~k~v~~--~-g~f~LnvwDiGGqr~IRpyWsNYyenvd~l 89 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSED-PRHLTPTNGFNTKKVEY--D-GTFHLNVWDIGGQRGIRPYWSNYYENVDGL 89 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCC-hhhccccCCcceEEEee--c-CcEEEEEEecCCccccchhhhhhhhccceE
Confidence 3578999999999999999999987654 34456667665544443 2 346899999999999999999999999999
Q ss_pred EEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HhcCCeEEEeccCCCCCH
Q 030524 86 VVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNI 159 (175)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v 159 (175)
|||+|.+|+..|+++...+-++....+ ..+|+.+.+||.|+..+..+. +....+ +..-+.+-+||+..++|+
T Consensus 90 IyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~e--eia~klnl~~lrdRswhIq~csals~eg~ 167 (185)
T KOG0074|consen 90 IYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVE--EIALKLNLAGLRDRSWHIQECSALSLEGS 167 (185)
T ss_pred EEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchH--HHHHhcchhhhhhceEEeeeCccccccCc
Confidence 999999999999999888888877665 789999999999975433222 111111 122346789999999999
Q ss_pred HHHHHHHHHHHh
Q 030524 160 KLCCHTLNSLIT 171 (175)
Q Consensus 160 ~~~f~~l~~~~~ 171 (175)
..-.+|+.+...
T Consensus 168 ~dg~~wv~sn~~ 179 (185)
T KOG0074|consen 168 TDGSDWVQSNPE 179 (185)
T ss_pred cCcchhhhcCCC
Confidence 888888766543
No 193
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.86 E-value=6.2e-21 Score=146.07 Aligned_cols=157 Identities=17% Similarity=0.192 Sum_probs=103.5
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcC--CCCCc---------------------------ccccceeeEEEEEEEECCe
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYD--KFDNT---------------------------YQATIGIDFLSKTMYLEDR 56 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~ 56 (175)
....++|+++|+.++|||||+++|+.. ..... .....+.+.......+...
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 456699999999999999999999862 11100 0011222333333334444
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCC----
Q 030524 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQ---- 131 (175)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~---- 131 (175)
.+.+.+||+||+++|...+...+.++|++++|+|++++++....+ .+...+.... ...|+++++||+|+.+..+
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~-~~~~iIVviNK~Dl~~~~~~~~~ 162 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL-GINQLIVAINKMDSVNYDEEEFE 162 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc-CCCeEEEEEEChhccCccHHHHH
Confidence 578999999999988777777788999999999999875332111 1111122222 2357889999999864222
Q ss_pred CCHHHHHHHHHhcC-----CeEEEeccCCCCCHHHHH
Q 030524 132 VSIEEGEAKSRELN-----VMFIETSAKAGFNIKLCC 163 (175)
Q Consensus 132 ~~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~~f 163 (175)
....+...+++..+ ++++++||++|+|+.+.+
T Consensus 163 ~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 163 AIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 11345556666655 579999999999998643
No 194
>COG1159 Era GTPase [General function prediction only]
Probab=99.86 E-value=1.2e-20 Score=133.73 Aligned_cols=162 Identities=17% Similarity=0.190 Sum_probs=107.2
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc--------cccc
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------LIPS 77 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~ 77 (175)
..++--|+++|.||+|||||+|++++.+..-......+.......+...+ ..++.+.||||-.+-.. ....
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~-~~QiIfvDTPGih~pk~~l~~~m~~~a~~ 81 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD-NAQIIFVDTPGIHKPKHALGELMNKAARS 81 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC-CceEEEEeCCCCCCcchHHHHHHHHHHHH
Confidence 44567899999999999999999999886633333332222233332332 45799999999432222 2234
Q ss_pred cccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcC-CeEEEeccCCC
Q 030524 78 YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKAG 156 (175)
Q Consensus 78 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~ 156 (175)
-+..+|+++||+|++++.. .-.+++.+.... .+.|+++++||.|.................... ..++++||+.|
T Consensus 82 sl~dvDlilfvvd~~~~~~--~~d~~il~~lk~--~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g 157 (298)
T COG1159 82 ALKDVDLILFVVDADEGWG--PGDEFILEQLKK--TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKG 157 (298)
T ss_pred HhccCcEEEEEEeccccCC--ccHHHHHHHHhh--cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeecccc
Confidence 4688999999999987432 222232222222 368999999999986554422233333333333 38999999999
Q ss_pred CCHHHHHHHHHHHHhh
Q 030524 157 FNIKLCCHTLNSLITV 172 (175)
Q Consensus 157 ~~v~~~f~~l~~~~~~ 172 (175)
.|+..+.+.+.+++-+
T Consensus 158 ~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 158 DNVDTLLEIIKEYLPE 173 (298)
T ss_pred CCHHHHHHHHHHhCCC
Confidence 9999999998877643
No 195
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=2.9e-20 Score=142.93 Aligned_cols=156 Identities=21% Similarity=0.202 Sum_probs=104.9
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCC-CCcccccceeeEEEEEEEECCeEEEEEEEeCCCccccccc-----------c
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-----------I 75 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~ 75 (175)
..++|+++|.+|+|||||+|++++... .....+..+.+.....+..++ ..+.+|||||..+.... .
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 469999999999999999999998653 233334444444444444444 45789999996432221 1
Q ss_pred cccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHH-HHHH----hcCCeEEE
Q 030524 76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGE-AKSR----ELNVMFIE 150 (175)
Q Consensus 76 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~-~~~~----~~~~~~~~ 150 (175)
..++..+|++|+|+|++++.+.+... ++..+.. .+.|+++++||+|+.++.. ..+.. .... ...+++++
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~~--~~~~~~~~~~~l~~~~~~~i~~ 323 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEKT--MEEFKKELRRRLPFLDYAPIVF 323 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHHH--HHHHHHHHHHhcccccCCCEEE
Confidence 23578999999999999886655543 2222222 4689999999999863221 11111 1111 12469999
Q ss_pred eccCCCCCHHHHHHHHHHHHh
Q 030524 151 TSAKAGFNIKLCCHTLNSLIT 171 (175)
Q Consensus 151 ~s~~~~~~v~~~f~~l~~~~~ 171 (175)
+||++|.|+.++|+.+.+...
T Consensus 324 ~SA~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 324 ISALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred EeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999876543
No 196
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.86 E-value=2.6e-20 Score=146.10 Aligned_cols=155 Identities=19% Similarity=0.184 Sum_probs=102.4
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccc----cceeeEEEEEEE------------ECCeEEEEEEEeCCCcccc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA----TIGIDFLSKTMY------------LEDRTVRLQLWDTAGQERF 71 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~----~~~~~~~~~~~~------------~~~~~~~~~i~D~~G~~~~ 71 (175)
++.-|+++|++++|||||+++|.+..+...... +.+..+...... ++.....+.+|||||++.|
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 456799999999999999999998765433222 112222111110 0011123889999999999
Q ss_pred cccccccccCCcEEEEEEECCC---hhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC------------CHHH
Q 030524 72 RSLIPSYIRDSSVAVVVYDVAS---RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV------------SIEE 136 (175)
Q Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~------------~~~~ 136 (175)
..++..++..+|++++|+|+++ +.+++.+.. +. . .++|+++++||+|+.+.... ....
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~----l~-~--~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~ 155 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQEALNI----LR-M--YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQ 155 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHH----HH-H--cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHH
Confidence 9999999999999999999987 444433321 11 1 46899999999998632100 0000
Q ss_pred ------------HHHHHH------------hc--CCeEEEeccCCCCCHHHHHHHHHHH
Q 030524 137 ------------GEAKSR------------EL--NVMFIETSAKAGFNIKLCCHTLNSL 169 (175)
Q Consensus 137 ------------~~~~~~------------~~--~~~~~~~s~~~~~~v~~~f~~l~~~ 169 (175)
..+++. .+ .++++++||++|+|+.++..++...
T Consensus 156 v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 156 VQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence 001111 11 3589999999999999999987653
No 197
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.85 E-value=8.2e-20 Score=129.28 Aligned_cols=151 Identities=19% Similarity=0.237 Sum_probs=101.1
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccccc-------ccccccccCCc
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-------SLIPSYIRDSS 83 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d 83 (175)
+|+++|++|+|||||+++|.+........+..+.+.....+..++ ..+++||+||..+.. ......++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 689999999999999999998754322222222333333444444 578999999974332 12335688999
Q ss_pred EEEEEEECCChh-hHHhHHHHHHHH----------------------------------------HHhc-----------
Q 030524 84 VAVVVYDVASRQ-SFLNTSKWIDEV----------------------------------------RTER----------- 111 (175)
Q Consensus 84 ~~i~v~d~~~~~-~~~~~~~~~~~~----------------------------------------~~~~----------- 111 (175)
++++|+|+++++ ..+.+...++.. ....
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998765 333333333211 1110
Q ss_pred ------------C--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 030524 112 ------------G--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170 (175)
Q Consensus 112 ------------~--~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~~ 170 (175)
+ .-+|+++++||+|+.. ..+...++.. .+++++||++|.|++++|+.+.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 0 1368999999999753 3344445543 4689999999999999999987754
No 198
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.85 E-value=3.3e-20 Score=149.62 Aligned_cols=157 Identities=20% Similarity=0.249 Sum_probs=108.5
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCccc----------cccc-c
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----------FRSL-I 75 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~-~ 75 (175)
..++|+++|.+|+|||||+|++++.... ....+..+.+.....+..++.. +.+|||||..+ +..+ .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence 4589999999999999999999987642 2233444455555556666654 67999999532 1111 1
Q ss_pred cccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-h----cCCeEEE
Q 030524 76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-E----LNVMFIE 150 (175)
Q Consensus 76 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~-~----~~~~~~~ 150 (175)
...+..+|++++|+|++++.+.+.... +..+.. .++|+++|+||+|+.+... ....+.... . ..++++.
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~i-~~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~ 600 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLKV-MSMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN 600 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHHH-HHHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence 234688999999999998877776543 333322 4799999999999864321 112222111 1 1247799
Q ss_pred eccCCCCCHHHHHHHHHHHHhh
Q 030524 151 TSAKAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 151 ~s~~~~~~v~~~f~~l~~~~~~ 172 (175)
+||++|.|+.++|+.+.+....
T Consensus 601 iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 601 LSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998887654
No 199
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.85 E-value=2.1e-20 Score=147.17 Aligned_cols=159 Identities=16% Similarity=0.236 Sum_probs=113.7
Q ss_pred eeEEEECCCCCCHHHHHHHHhcC--CCCCc------------ccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccc
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYD--KFDNT------------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI 75 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 75 (175)
.+|+++|+.++|||||+++|+.. .+... .....+++.......+....+++.+|||||+.+|...+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 47999999999999999999863 21111 11223455555555454455789999999999999999
Q ss_pred cccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC-CHHHHHHHH-------HhcCCe
Q 030524 76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-SIEEGEAKS-------RELNVM 147 (175)
Q Consensus 76 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~-~~~~~~~~~-------~~~~~~ 147 (175)
..++..+|++++|+|+.+.. ....+.|+..... .++|+++++||+|+.+.+.. ..++...+. ....++
T Consensus 82 ~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~---~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p 157 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP 157 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH---CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence 99999999999999998642 3344555555543 46899999999998543221 122333333 223578
Q ss_pred EEEeccCCCC----------CHHHHHHHHHHHHhh
Q 030524 148 FIETSAKAGF----------NIKLCCHTLNSLITV 172 (175)
Q Consensus 148 ~~~~s~~~~~----------~v~~~f~~l~~~~~~ 172 (175)
++++|+++|. |+..+|+.+.+.+.+
T Consensus 158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred EEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 9999999995 799999998887643
No 200
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.85 E-value=1.7e-19 Score=119.08 Aligned_cols=159 Identities=25% Similarity=0.316 Sum_probs=116.6
Q ss_pred CCCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCc--------cc----ccceeeEEEEEEEECCeEEEEEEEeCCCccc
Q 030524 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT--------YQ----ATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70 (175)
Q Consensus 3 ~~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~--------~~----~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 70 (175)
........||++.|+.++||||++.++........ +. .|..+++..... .....+++++||||++
T Consensus 4 ~~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~---~~~~~v~LfgtPGq~R 80 (187)
T COG2229 4 AANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL---DEDTGVHLFGTPGQER 80 (187)
T ss_pred ccccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEE---cCcceEEEecCCCcHH
Confidence 34566789999999999999999999988764111 11 122222222221 2234789999999999
Q ss_pred ccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhc--CCeE
Q 030524 71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL--NVMF 148 (175)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~--~~~~ 148 (175)
|.-+|..+.+++.++|+++|.+.+..+ .....+. +.... ..+|++++.||.|+.. ....+..++..+.. .++.
T Consensus 81 F~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~-f~~~~-~~ip~vVa~NK~DL~~--a~ppe~i~e~l~~~~~~~~v 155 (187)
T COG2229 81 FKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIID-FLTSR-NPIPVVVAINKQDLFD--ALPPEKIREALKLELLSVPV 155 (187)
T ss_pred HHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHH-HHhhc-cCCCEEEEeeccccCC--CCCHHHHHHHHHhccCCCce
Confidence 999999999999999999999998887 2233222 33232 2399999999999954 34455555555544 7899
Q ss_pred EEeccCCCCCHHHHHHHHHHH
Q 030524 149 IETSAKAGFNIKLCCHTLNSL 169 (175)
Q Consensus 149 ~~~s~~~~~~v~~~f~~l~~~ 169 (175)
++.++..+++..+..+.+...
T Consensus 156 i~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 156 IEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eeeecccchhHHHHHHHHHhh
Confidence 999999999999999887765
No 201
>PRK10218 GTP-binding protein; Provisional
Probab=99.85 E-value=9.7e-20 Score=143.37 Aligned_cols=159 Identities=16% Similarity=0.208 Sum_probs=114.0
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcC--CCCCc------------ccccceeeEEEEEEEECCeEEEEEEEeCCCccccccc
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYD--KFDNT------------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL 74 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 74 (175)
-.+|+++|+.++|||||+++|+.. .+... ...+.++++......+....+++.+|||||+.+|...
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~ 84 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE 84 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence 468999999999999999999972 22211 1234556666666666666789999999999999999
Q ss_pred ccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC-CHHHHHHHHH-------hcCC
Q 030524 75 IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-SIEEGEAKSR-------ELNV 146 (175)
Q Consensus 75 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~-~~~~~~~~~~-------~~~~ 146 (175)
+..+++.+|++|+|+|+++....+ .+.++..... .++|.++++||+|+...+.. ..++...+.. ...+
T Consensus 85 v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~ 160 (607)
T PRK10218 85 VERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDF 160 (607)
T ss_pred HHHHHHhCCEEEEEEecccCccHH-HHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCC
Confidence 999999999999999998753322 2333333322 46889999999998643221 1222333321 2346
Q ss_pred eEEEeccCCCC----------CHHHHHHHHHHHHh
Q 030524 147 MFIETSAKAGF----------NIKLCCHTLNSLIT 171 (175)
Q Consensus 147 ~~~~~s~~~~~----------~v~~~f~~l~~~~~ 171 (175)
+++.+|+.+|. ++..+|+.+.+.+-
T Consensus 161 PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 161 PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred CEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 89999999998 58899988887654
No 202
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.84 E-value=1.5e-19 Score=145.90 Aligned_cols=152 Identities=18% Similarity=0.132 Sum_probs=102.4
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCccc--------cccccccc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--------FRSLIPSY 78 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~ 78 (175)
...+|+++|.+|+|||||+|+|++.... ....+..+.+........++ ..+.+|||||.+. +......+
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 3478999999999999999999986532 22233333344443434444 4689999999653 22344556
Q ss_pred ccCCcEEEEEEECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC-eEEEeccCCC
Q 030524 79 IRDSSVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAG 156 (175)
Q Consensus 79 ~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~ 156 (175)
+..+|++|+|+|+++.. .... .|...+.. .++|+++|+||+|+.... .....+ ...+. ..+++||++|
T Consensus 352 ~~~aD~iL~VvDa~~~~--~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~----~~~~~~-~~lg~~~~~~iSA~~g 421 (712)
T PRK09518 352 VSLADAVVFVVDGQVGL--TSTDERIVRMLRR---AGKPVVLAVNKIDDQASE----YDAAEF-WKLGLGEPYPISAMHG 421 (712)
T ss_pred HHhCCEEEEEEECCCCC--CHHHHHHHHHHHh---cCCCEEEEEECcccccch----hhHHHH-HHcCCCCeEEEECCCC
Confidence 78999999999998642 2222 33333332 479999999999975321 112222 12333 4579999999
Q ss_pred CCHHHHHHHHHHHHh
Q 030524 157 FNIKLCCHTLNSLIT 171 (175)
Q Consensus 157 ~~v~~~f~~l~~~~~ 171 (175)
.|+.++|+++.+.+.
T Consensus 422 ~GI~eLl~~i~~~l~ 436 (712)
T PRK09518 422 RGVGDLLDEALDSLK 436 (712)
T ss_pred CCchHHHHHHHHhcc
Confidence 999999999988764
No 203
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.84 E-value=2.7e-20 Score=141.53 Aligned_cols=163 Identities=20% Similarity=0.158 Sum_probs=106.1
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCC---CcccccceeeEE--E----------------EEEEECC------eEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD---NTYQATIGIDFL--S----------------KTMYLED------RTVR 59 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~--~----------------~~~~~~~------~~~~ 59 (175)
...++|+++|++++|||||+++|.+.... ++.....+.... . ....+++ ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 45689999999999999999999753221 111111111110 0 0101111 1357
Q ss_pred EEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC--CHHHH
Q 030524 60 LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEG 137 (175)
Q Consensus 60 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~--~~~~~ 137 (175)
+.+||+||+++|...+......+|++++|+|++++.........+..+. .. ...|+++++||+|+.+.... ...+.
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~-~~-gi~~iIVvvNK~Dl~~~~~~~~~~~~i 159 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALE-II-GIKNIVIVQNKIDLVSKEKALENYEEI 159 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHH-Hc-CCCeEEEEEEccccCCHHHHHHHHHHH
Confidence 9999999999998888888889999999999986531222333333332 22 23468899999998643221 12333
Q ss_pred HHHHHhc---CCeEEEeccCCCCCHHHHHHHHHHHHh
Q 030524 138 EAKSREL---NVMFIETSAKAGFNIKLCCHTLNSLIT 171 (175)
Q Consensus 138 ~~~~~~~---~~~~~~~s~~~~~~v~~~f~~l~~~~~ 171 (175)
..+.... +++++++|+++|+|+++++++|...+.
T Consensus 160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 4444433 578999999999999999999987643
No 204
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.84 E-value=3.5e-20 Score=129.30 Aligned_cols=146 Identities=21% Similarity=0.250 Sum_probs=92.7
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCCCCc-------------------------------ccccceeeEEEEEEEECCeEEE
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKFDNT-------------------------------YQATIGIDFLSKTMYLEDRTVR 59 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 59 (175)
+|+++|++|+|||||+++|+...-... ..+..+.+..... +......
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~--~~~~~~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRY--FSTPKRK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeE--EecCCce
Confidence 689999999999999999976321100 0111222222222 2223457
Q ss_pred EEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC----CHH
Q 030524 60 LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV----SIE 135 (175)
Q Consensus 60 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~----~~~ 135 (175)
+.+|||||+++|...+...+..+|++++|+|++++..-+ ..... .+.... ...++++++||+|+.+.... ...
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~~~-~~~~~~-~~~~iIvviNK~D~~~~~~~~~~~i~~ 155 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRRHS-YILSLL-GIRHVVVAVNKMDLVDYSEEVFEEIVA 155 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHHHH-HHHHHc-CCCcEEEEEEchhcccCCHHHHHHHHH
Confidence 899999999888776777789999999999998753211 12211 122222 12357778999998642211 123
Q ss_pred HHHHHHHhcCC---eEEEeccCCCCCHHH
Q 030524 136 EGEAKSRELNV---MFIETSAKAGFNIKL 161 (175)
Q Consensus 136 ~~~~~~~~~~~---~~~~~s~~~~~~v~~ 161 (175)
+...++..++. +++++||++|.|+.+
T Consensus 156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 156 DYLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 34455555663 589999999999875
No 205
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.83 E-value=1.2e-19 Score=143.47 Aligned_cols=156 Identities=18% Similarity=0.155 Sum_probs=104.7
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC---CCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDK---FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (175)
-|+++|+.++|||||+++|.+.. ...+.....+++.........+ ...+.+||+||+++|...+...+.++|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 58899999999999999998642 2233333344333323332222 2358999999999998877778899999999
Q ss_pred EEECCChhhHHhHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCC--CHHHHHHHHHhcC---CeEEEeccCCCCCHHH
Q 030524 88 VYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQV--SIEEGEAKSRELN---VMFIETSAKAGFNIKL 161 (175)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nk~D~~~~~~~--~~~~~~~~~~~~~---~~~~~~s~~~~~~v~~ 161 (175)
|+|++++.. ......+. +... .++| +++++||+|+.++... ...+...+....+ ++++++|+++|+|+++
T Consensus 81 VVda~eg~~-~qT~ehl~-il~~--lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~ 156 (614)
T PRK10512 81 VVACDDGVM-AQTREHLA-ILQL--TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA 156 (614)
T ss_pred EEECCCCCc-HHHHHHHH-HHHH--cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence 999986421 12222222 2222 2455 5789999998643221 1233444444444 6899999999999999
Q ss_pred HHHHHHHHHh
Q 030524 162 CCHTLNSLIT 171 (175)
Q Consensus 162 ~f~~l~~~~~ 171 (175)
+++.|.+...
T Consensus 157 L~~~L~~~~~ 166 (614)
T PRK10512 157 LREHLLQLPE 166 (614)
T ss_pred HHHHHHHhhc
Confidence 9999876543
No 206
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.83 E-value=2.6e-19 Score=140.89 Aligned_cols=155 Identities=22% Similarity=0.248 Sum_probs=100.9
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccc----cceeeEEEEEEE--ECCeE-----E-----EEEEEeCCCccc
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA----TIGIDFLSKTMY--LEDRT-----V-----RLQLWDTAGQER 70 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~-----~-----~~~i~D~~G~~~ 70 (175)
.++..|+++|++++|||||+++|.+......... +.+.++...... ..+.. . .+.+|||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 4567899999999999999999987654322222 222121111110 00111 1 268999999999
Q ss_pred ccccccccccCCcEEEEEEECCC---hhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC--C----------HH
Q 030524 71 FRSLIPSYIRDSSVAVVVYDVAS---RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--S----------IE 135 (175)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~--~----------~~ 135 (175)
|..++...+..+|++++|+|+++ +.+++.+.. +. . .++|+++++||+|+...... . ..
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~-~--~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~ 156 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LK-R--RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ 156 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HH-H--cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence 99998888899999999999987 445444332 21 1 47899999999998521000 0 00
Q ss_pred -----------HHHHHHHhc---------------CCeEEEeccCCCCCHHHHHHHHHH
Q 030524 136 -----------EGEAKSREL---------------NVMFIETSAKAGFNIKLCCHTLNS 168 (175)
Q Consensus 136 -----------~~~~~~~~~---------------~~~~~~~s~~~~~~v~~~f~~l~~ 168 (175)
+........ .++++++|+.+|+|+.++...+..
T Consensus 157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 011111111 257999999999999999988764
No 207
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.83 E-value=1.2e-19 Score=122.06 Aligned_cols=150 Identities=22% Similarity=0.316 Sum_probs=97.0
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccc----------cccccccccc
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----------FRSLIPSYIR 80 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~~ 80 (175)
.|+++|++|+|||||++.++++.......++.+.+........++ .+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 489999999999999999996554444444444343333333333 789999999533 3333444443
Q ss_pred ---CCcEEEEEEECCChhhH--HhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC--CHHHHHHHHH--hcCCeEEEe
Q 030524 81 ---DSSVAVVVYDVASRQSF--LNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEGEAKSR--ELNVMFIET 151 (175)
Q Consensus 81 ---~~d~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~--~~~~~~~~~~--~~~~~~~~~ 151 (175)
+.+.+++++|..+..+. ..+..|+.. .+.|+++++||+|+...... .......... ....+++++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEE------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF 151 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHH------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 45788999998765321 123333322 25899999999998532211 1122222222 234589999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 030524 152 SAKAGFNIKLCCHTLNSL 169 (175)
Q Consensus 152 s~~~~~~v~~~f~~l~~~ 169 (175)
|++++.++.+++++|.+.
T Consensus 152 Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 152 SSLKGQGIDELRALIEKW 169 (170)
T ss_pred ecCCCCCHHHHHHHHHHh
Confidence 999999999999998875
No 208
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=5.1e-21 Score=121.15 Aligned_cols=159 Identities=21% Similarity=0.307 Sum_probs=121.4
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (175)
+..+|+++|-.|+||++++-++-.+... ...|+.++.... +..+..++.+||..|+...+..|+.|+.+.|++||
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevv-ttkPtigfnve~----v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIGFNVET----VPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCCcCccc----cccccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 6789999999999999998887655433 235555544332 23366889999999999999999999999999999
Q ss_pred EEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHH-----HHHHHhcCCeEEEeccCCCCCHHH
Q 030524 88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEG-----EAKSRELNVMFIETSAKAGFNIKL 161 (175)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~-----~~~~~~~~~~~~~~s~~~~~~v~~ 161 (175)
|+|.+|++.+......+-.+..... .+..+++++||.|.... ....++ .+..+..-+.+++.||..|+|+++
T Consensus 92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~--~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~ 169 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA--LTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDP 169 (182)
T ss_pred EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh--hhHHHHHHHhChHHHhhheeEEEeeccccccCCcH
Confidence 9999999988887666665555443 56778889999997532 222222 222333447899999999999999
Q ss_pred HHHHHHHHHhhh
Q 030524 162 CCHTLNSLITVC 173 (175)
Q Consensus 162 ~f~~l~~~~~~~ 173 (175)
.++||.+.+.+.
T Consensus 170 ~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 170 AMDWLQRPLKSR 181 (182)
T ss_pred HHHHHHHHHhcc
Confidence 999999887653
No 209
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.83 E-value=2.6e-19 Score=133.87 Aligned_cols=153 Identities=22% Similarity=0.265 Sum_probs=112.9
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSY 78 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~ 78 (175)
..++++++|.||+|||||+|.|+++... .+..+..+.|.....+.++| +.+++.||+|-.+-... ....
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence 4589999999999999999999997654 55677777788888888888 66999999995433332 2344
Q ss_pred ccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCC
Q 030524 79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158 (175)
Q Consensus 79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 158 (175)
++++|.+++|+|.+.+.+-+... .+. ....+.|+++|.||.|+........ .....+.+++.+|+++|+|
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d~~-~~~----~~~~~~~~i~v~NK~DL~~~~~~~~-----~~~~~~~~~i~iSa~t~~G 363 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKEDLA-LIE----LLPKKKPIIVVLNKADLVSKIELES-----EKLANGDAIISISAKTGEG 363 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhhHH-HHH----hcccCCCEEEEEechhcccccccch-----hhccCCCceEEEEecCccC
Confidence 78999999999999862222211 111 3346799999999999975443111 1122344789999999999
Q ss_pred HHHHHHHHHHHHhh
Q 030524 159 IKLCCHTLNSLITV 172 (175)
Q Consensus 159 v~~~f~~l~~~~~~ 172 (175)
++.+.+.|.+.+..
T Consensus 364 l~~L~~~i~~~~~~ 377 (454)
T COG0486 364 LDALREAIKQLFGK 377 (454)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999998877653
No 210
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.83 E-value=3.5e-19 Score=122.76 Aligned_cols=147 Identities=16% Similarity=0.121 Sum_probs=96.3
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCC--------------cccccceeeEEEEEEEECCeEEEEEEEeCCCccccccc
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDN--------------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL 74 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 74 (175)
+++|+++|+.++|||||+++|++..... ......+.+..............+.++||||+..|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 5899999999999999999998641000 00112233333333444444567899999999988877
Q ss_pred ccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCC---CHHHHHHHHHhcC-----
Q 030524 75 IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQV---SIEEGEAKSRELN----- 145 (175)
Q Consensus 75 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nk~D~~~~~~~---~~~~~~~~~~~~~----- 145 (175)
....+..+|++++|+|+..+..- .....+..+.. .++| +++++||+|+....+. ...+...+....+
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~-~~~~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~ 157 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMP-QTREHLLLARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN 157 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence 77778899999999999764221 12233333322 3566 7788999998532211 1223444444443
Q ss_pred CeEEEeccCCCCCH
Q 030524 146 VMFIETSAKAGFNI 159 (175)
Q Consensus 146 ~~~~~~s~~~~~~v 159 (175)
++++++|+++|.+.
T Consensus 158 v~iipiSa~~g~n~ 171 (195)
T cd01884 158 TPIVRGSALKALEG 171 (195)
T ss_pred CeEEEeeCccccCC
Confidence 68999999999985
No 211
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.83 E-value=2e-19 Score=136.76 Aligned_cols=165 Identities=19% Similarity=0.140 Sum_probs=103.6
Q ss_pred CCCCceeEEEECCCCCCHHHHHHHHhcCCCC---CcccccceeeEEE------------------EEEEEC--C----eE
Q 030524 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFD---NTYQATIGIDFLS------------------KTMYLE--D----RT 57 (175)
Q Consensus 5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~------------------~~~~~~--~----~~ 57 (175)
....+++|+++|+.++|||||+++|.+.... .+.....+++... .....+ + ..
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL 84 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence 3456799999999999999999999653211 1111112211110 000011 1 13
Q ss_pred EEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC--CHH
Q 030524 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIE 135 (175)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~--~~~ 135 (175)
..+.+||+||+++|.........++|++++|+|++++.........+..+. .. ...|+++++||+|+.++... ..+
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~-~~-~i~~iiVVlNK~Dl~~~~~~~~~~~ 162 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALD-II-GIKNIVIVQNKIDLVSKERALENYE 162 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHH-Hc-CCCcEEEEEEeeccccchhHHHHHH
Confidence 578999999999887766666677899999999986431111122222222 21 12468899999998653321 123
Q ss_pred HHHHHHHhc---CCeEEEeccCCCCCHHHHHHHHHHHHh
Q 030524 136 EGEAKSREL---NVMFIETSAKAGFNIKLCCHTLNSLIT 171 (175)
Q Consensus 136 ~~~~~~~~~---~~~~~~~s~~~~~~v~~~f~~l~~~~~ 171 (175)
+...++... +++++++||++|+|+.++++.|.+.+.
T Consensus 163 ~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 163 QIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 344444332 478999999999999999999987653
No 212
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.82 E-value=1.7e-19 Score=127.87 Aligned_cols=113 Identities=18% Similarity=0.226 Sum_probs=80.4
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCCC--------C-----cc---cccceeeEEEEEEEECCeEEEEEEEeCCCccccccc
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKFD--------N-----TY---QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL 74 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~~--------~-----~~---~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 74 (175)
+|+++|++|+|||||+++++...-. . ++ ....+.+.......+.....++.+|||||+.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5899999999999999999863210 0 00 112223333333444444568999999999999988
Q ss_pred ccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524 75 IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (175)
Q Consensus 75 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~ 127 (175)
+..+++.+|++++|+|+++.... ....++..+.. .++|+++++||+|+.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~ 129 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRA 129 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECcccc
Confidence 89999999999999999876433 23444444432 368999999999986
No 213
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.82 E-value=2e-19 Score=134.09 Aligned_cols=150 Identities=20% Similarity=0.171 Sum_probs=107.9
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCccccc---------ccccccc
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR---------SLIPSYI 79 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~ 79 (175)
..|+++|-||||||||.|+|+++... .+..+..+.|.........+.. |.++||+|.+... ......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 67999999999999999999998754 4445555556666666566644 9999999965322 1334457
Q ss_pred cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC-eEEEeccCCCCC
Q 030524 80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFN 158 (175)
Q Consensus 80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~ 158 (175)
..+|++|||+|...+-+ .....+-.+... .++|+++++||+|-. ..++.......+|. ..+.+||..|.|
T Consensus 82 ~eADvilfvVD~~~Git--~~D~~ia~~Lr~--~~kpviLvvNK~D~~-----~~e~~~~efyslG~g~~~~ISA~Hg~G 152 (444)
T COG1160 82 EEADVILFVVDGREGIT--PADEEIAKILRR--SKKPVILVVNKIDNL-----KAEELAYEFYSLGFGEPVPISAEHGRG 152 (444)
T ss_pred HhCCEEEEEEeCCCCCC--HHHHHHHHHHHh--cCCCEEEEEEcccCc-----hhhhhHHHHHhcCCCCceEeehhhccC
Confidence 78999999999875422 222222233332 469999999999943 22334444555676 789999999999
Q ss_pred HHHHHHHHHHHH
Q 030524 159 IKLCCHTLNSLI 170 (175)
Q Consensus 159 v~~~f~~l~~~~ 170 (175)
+.++.+.+.+.+
T Consensus 153 i~dLld~v~~~l 164 (444)
T COG1160 153 IGDLLDAVLELL 164 (444)
T ss_pred HHHHHHHHHhhc
Confidence 999999998875
No 214
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.82 E-value=1.9e-19 Score=126.12 Aligned_cols=161 Identities=17% Similarity=0.213 Sum_probs=102.0
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCCCCcccc-cceeeEEEEEEEECCeEEEEEEEeCCCcccccc-----cccccccCCcE
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQA-TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-----LIPSYIRDSSV 84 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~~~~d~ 84 (175)
||+++|+.+|||||+.+.+.++..+.+... ..+.+.....+. ....+.+.+||+||+..+.. .....++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~-~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVR-FLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEE-CTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEe-cCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 799999999999999999988765433221 122233333332 23345799999999876554 35677899999
Q ss_pred EEEEEECCChhhHHhHHH---HHHHHHHhcCCCCcEEEEEeCCCCCCCCCC------CHHHHHHHHHhcC---CeEEEec
Q 030524 85 AVVVYDVASRQSFLNTSK---WIDEVRTERGSDVIIVLVGNKTDLVEKRQV------SIEEGEAKSRELN---VMFIETS 152 (175)
Q Consensus 85 ~i~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~------~~~~~~~~~~~~~---~~~~~~s 152 (175)
+|||+|+.+.+-.+.+.. .++.+... .++..+-+++.|+|+..+... ...+..+.+...+ +.++.+|
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~-sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS 158 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQY-SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS 158 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHH-STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHh-CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence 999999985443333333 33333333 378999999999998542111 1222333444455 7899999
Q ss_pred cCCCCCHHHHHHHHHHHHhhhh
Q 030524 153 AKAGFNIKLCCHTLNSLITVCI 174 (175)
Q Consensus 153 ~~~~~~v~~~f~~l~~~~~~~~ 174 (175)
.++ +.+.+.|..+++.+.++.
T Consensus 159 I~D-~Sly~A~S~Ivq~LiP~~ 179 (232)
T PF04670_consen 159 IWD-ESLYEAWSKIVQKLIPNL 179 (232)
T ss_dssp TTS-THHHHHHHHHHHTTSTTH
T ss_pred CcC-cHHHHHHHHHHHHHcccH
Confidence 988 589999999999988764
No 215
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.81 E-value=3.8e-19 Score=114.88 Aligned_cols=135 Identities=21% Similarity=0.294 Sum_probs=97.8
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCc----ccccccccccccCCcEEE
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ----ERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----~~~~~~~~~~~~~~d~~i 86 (175)
||+++|+.|+|||||+++|.+... .+..|..+.+ .=.++||||. ..+....-....++|.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~------------~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEY------------YDNTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEe------------cccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 799999999999999999988543 4444544321 1245899993 333333334456899999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC-eEEEeccCCCCCHHHHHHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKLCCHT 165 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~f~~ 165 (175)
++.|++++.+.-. ..+... -+.|+|=|+||+|+.. ...+.+.++++.+.-|+ .+|++|+.+|+|++++.++
T Consensus 69 ll~dat~~~~~~p-----P~fa~~--f~~pvIGVITK~Dl~~-~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 69 LLQDATEPRSVFP-----PGFASM--FNKPVIGVITKIDLPS-DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred EEecCCCCCccCC-----chhhcc--cCCCEEEEEECccCcc-chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence 9999998643211 111122 2589999999999863 34467788888888898 7899999999999999998
Q ss_pred HH
Q 030524 166 LN 167 (175)
Q Consensus 166 l~ 167 (175)
|.
T Consensus 141 L~ 142 (143)
T PF10662_consen 141 LE 142 (143)
T ss_pred Hh
Confidence 74
No 216
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.81 E-value=3.3e-19 Score=124.91 Aligned_cols=113 Identities=26% Similarity=0.310 Sum_probs=79.5
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCCCCcc-----------------cccceeeEEEEEEEE-----CCeEEEEEEEeCCCc
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKFDNTY-----------------QATIGIDFLSKTMYL-----EDRTVRLQLWDTAGQ 68 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~-----~~~~~~~~i~D~~G~ 68 (175)
+|+++|+.|+|||||+++|+........ ....+.+........ ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999874322110 011222222222211 355788999999999
Q ss_pred ccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524 69 ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (175)
Q Consensus 69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~ 127 (175)
.+|...+..++..+|++++|+|+++..+... ..++..... .+.|+++++||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence 9998888888999999999999987765533 333333322 358999999999975
No 217
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=7.2e-20 Score=118.60 Aligned_cols=156 Identities=20% Similarity=0.252 Sum_probs=119.7
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (175)
+.=|++++|-.|+|||||+++|...+. ..+.||. +..+.+..+.| .+++.+|.+||..-+..|+.|+..+|++++
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl-~qhvPTl--HPTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~ 93 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRL-GQHVPTL--HPTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVY 93 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccc-cccCCCc--CCChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence 346899999999999999999887653 3334433 22223334555 569999999999999999999999999999
Q ss_pred EEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHh--------------cC---CeEE
Q 030524 88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE--------------LN---VMFI 149 (175)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~--------------~~---~~~~ 149 (175)
.+|+.|.+.|.+.+..++.+..... .++|+++.+||+|.+.+. ..++.+....- .+ +..+
T Consensus 94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evf 171 (193)
T KOG0077|consen 94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVF 171 (193)
T ss_pred eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEEE
Confidence 9999999999999999998887764 789999999999986543 33333322111 11 2478
Q ss_pred EeccCCCCCHHHHHHHHHHHH
Q 030524 150 ETSAKAGFNIKLCCHTLNSLI 170 (175)
Q Consensus 150 ~~s~~~~~~v~~~f~~l~~~~ 170 (175)
.||...+.+..+.|.|+.+.+
T Consensus 172 mcsi~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred EEEEEccCccceeeeehhhhc
Confidence 889999999999999887764
No 218
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.81 E-value=3.3e-18 Score=127.65 Aligned_cols=158 Identities=26% Similarity=0.272 Sum_probs=110.8
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCccc---------cccc--c
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------FRSL--I 75 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~--~ 75 (175)
.+++|+++|-||+|||||+|++++.... ....+..+.+.....+..++. .+.++||+|-.+ +.+. .
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~--~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGR--KYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCe--EEEEEECCCCCcccccccceEEEeehhh
Confidence 5699999999999999999999997543 344555555666666666664 589999999322 1111 1
Q ss_pred cccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHh----cC-CeEEE
Q 030524 76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE----LN-VMFIE 150 (175)
Q Consensus 76 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~----~~-~~~~~ 150 (175)
...+..+|++++|+|++.+.+-+. ..+-.+... .+.+++++.||+|+.+......++.+..... .+ ++.+.
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD--~~ia~~i~~--~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~ 330 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQD--LRIAGLIEE--AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF 330 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHH--HHHHHHHHH--cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence 233678999999999987644333 222222222 4789999999999877644444444333332 23 48999
Q ss_pred eccCCCCCHHHHHHHHHHHHh
Q 030524 151 TSAKAGFNIKLCCHTLNSLIT 171 (175)
Q Consensus 151 ~s~~~~~~v~~~f~~l~~~~~ 171 (175)
+||.+|.++.++|+.+.+...
T Consensus 331 iSA~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 331 ISALTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred EEecCCCChHHHHHHHHHHHH
Confidence 999999999999999776543
No 219
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.81 E-value=7.4e-19 Score=124.68 Aligned_cols=163 Identities=18% Similarity=0.173 Sum_probs=107.8
Q ss_pred CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccc------------cc
Q 030524 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER------------FR 72 (175)
Q Consensus 5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------------~~ 72 (175)
++.+.++|+++|.||+|||||.|.+++.+..+....+.+.+....-+... ...++.|+||||--. +.
T Consensus 68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts-~eTQlvf~DTPGlvs~~~~r~~~l~~s~l 146 (379)
T KOG1423|consen 68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITS-GETQLVFYDTPGLVSKKMHRRHHLMMSVL 146 (379)
T ss_pred hcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEec-CceEEEEecCCcccccchhhhHHHHHHhh
Confidence 45678999999999999999999999999887777777644444444334 345899999999211 11
Q ss_pred ccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-------------CCCC---HHH
Q 030524 73 SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK-------------RQVS---IEE 136 (175)
Q Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~-------------~~~~---~~~ 136 (175)
..-...+.++|++++++|+++....-. .+.+..+..+ ..+|.++++||.|.... .+.. ..-
T Consensus 147 q~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y--s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v 223 (379)
T KOG1423|consen 147 QNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY--SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEV 223 (379)
T ss_pred hCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH--hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhH
Confidence 122344678999999999996322111 1122223333 36999999999996532 1111 111
Q ss_pred HHHHHHhc---------CC----eEEEeccCCCCCHHHHHHHHHHHHh
Q 030524 137 GEAKSREL---------NV----MFIETSAKAGFNIKLCCHTLNSLIT 171 (175)
Q Consensus 137 ~~~~~~~~---------~~----~~~~~s~~~~~~v~~~f~~l~~~~~ 171 (175)
.+.+.... |+ .+|.+||..|+|++++-++|+..+.
T Consensus 224 ~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 224 QEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred HHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 11121111 22 3899999999999999999987654
No 220
>PRK12736 elongation factor Tu; Reviewed
Probab=99.80 E-value=1.6e-18 Score=131.45 Aligned_cols=161 Identities=17% Similarity=0.148 Sum_probs=105.8
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCCCC--------------cccccceeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDN--------------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 71 (175)
...+++|+++|+.++|||||+++|++..... ......+.+..............+.++||||+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 3467999999999999999999998631100 01112333344444445444567899999999988
Q ss_pred cccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCCC---HHHHHHHHHhcC--
Q 030524 72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQVS---IEEGEAKSRELN-- 145 (175)
Q Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nk~D~~~~~~~~---~~~~~~~~~~~~-- 145 (175)
......-+..+|++++|+|+.++..- ....++..+.. .++| +++++||+|+.+..+.. ..+...+....+
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~-~t~~~~~~~~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 164 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMP-QTREHILLARQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFP 164 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHHHHHH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCC
Confidence 87776667889999999999864221 12233332222 3577 67889999986432211 224445554454
Q ss_pred ---CeEEEeccCCCC--------CHHHHHHHHHHHH
Q 030524 146 ---VMFIETSAKAGF--------NIKLCCHTLNSLI 170 (175)
Q Consensus 146 ---~~~~~~s~~~~~--------~v~~~f~~l~~~~ 170 (175)
++++++|+++|. ++.++++.+.+.+
T Consensus 165 ~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 165 GDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred cCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 589999999983 5777777776654
No 221
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.80 E-value=4.3e-19 Score=124.76 Aligned_cols=148 Identities=21% Similarity=0.228 Sum_probs=91.2
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCC--CC---------------------------cccccceeeEEEEEEEECCeEEEEE
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKF--DN---------------------------TYQATIGIDFLSKTMYLEDRTVRLQ 61 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (175)
+|+++|+.++|||||+++|+...- .. ......+.+.......+......+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 589999999999999999864210 00 0000112222222223333446799
Q ss_pred EEeCCCcccccccccccccCCcEEEEEEECCChhh---HH---hHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC--CCC
Q 030524 62 LWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQS---FL---NTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR--QVS 133 (175)
Q Consensus 62 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~--~~~ 133 (175)
+||+||+.+|...+...+..+|++|+|+|++++.. +. .....+... ... ...|+++++||+|+.... ...
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~iiivvNK~Dl~~~~~~~~~ 158 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTL-GVKQLIVAVNKMDDVTVNWSEER 158 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HHc-CCCeEEEEEEccccccccccHHH
Confidence 99999998887777777788999999999987421 11 122222222 222 236888899999986321 111
Q ss_pred ----HHHHHHHHHhc-----CCeEEEeccCCCCCHH
Q 030524 134 ----IEEGEAKSREL-----NVMFIETSAKAGFNIK 160 (175)
Q Consensus 134 ----~~~~~~~~~~~-----~~~~~~~s~~~~~~v~ 160 (175)
..+........ +++++++||++|+|+.
T Consensus 159 ~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 159 YDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 11222233343 3679999999999986
No 222
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.80 E-value=1.7e-18 Score=134.49 Aligned_cols=157 Identities=17% Similarity=0.166 Sum_probs=117.6
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCc------cccccccccccc-
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ------ERFRSLIPSYIR- 80 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~------~~~~~~~~~~~~- 80 (175)
+..+|+++|+||+|||||.|+|++.+......+..+++...-.....++. +++.|.||- ..-+...+.|+.
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~ 79 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLE 79 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence 34679999999999999999999988777777777777776666666644 899999992 111223444443
Q ss_pred -CCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCH
Q 030524 81 -DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159 (175)
Q Consensus 81 -~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 159 (175)
+.|++|-|.|++|-++--.+.-.+.+ -+.|+++++|++|..+. .-..-+.+++.+.+|+|+++++|+.|+|+
T Consensus 80 ~~~D~ivnVvDAtnLeRnLyltlQLlE------~g~p~ilaLNm~D~A~~-~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~ 152 (653)
T COG0370 80 GKPDLIVNVVDATNLERNLYLTLQLLE------LGIPMILALNMIDEAKK-RGIRIDIEKLSKLLGVPVVPTVAKRGEGL 152 (653)
T ss_pred CCCCEEEEEcccchHHHHHHHHHHHHH------cCCCeEEEeccHhhHHh-cCCcccHHHHHHHhCCCEEEEEeecCCCH
Confidence 56999999999987643333222222 47899999999997543 33445667788999999999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 030524 160 KLCCHTLNSLITVC 173 (175)
Q Consensus 160 ~~~f~~l~~~~~~~ 173 (175)
+++...+.+....+
T Consensus 153 ~~l~~~i~~~~~~~ 166 (653)
T COG0370 153 EELKRAIIELAESK 166 (653)
T ss_pred HHHHHHHHHhcccc
Confidence 99999887655443
No 223
>PRK12735 elongation factor Tu; Reviewed
Probab=99.80 E-value=1.9e-18 Score=131.07 Aligned_cols=161 Identities=17% Similarity=0.130 Sum_probs=104.8
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCCC--------------CcccccceeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD--------------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 71 (175)
....++|+++|++++|||||+++|++.... .......+.+..............+.++||||+.+|
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY 88 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence 356799999999999999999999862100 001112333333333444444457899999999988
Q ss_pred cccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCCCC---CHHHHHHHHHhcC--
Q 030524 72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIV-LVGNKTDLVEKRQV---SIEEGEAKSRELN-- 145 (175)
Q Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i-iv~nk~D~~~~~~~---~~~~~~~~~~~~~-- 145 (175)
...+...+.++|++++|+|+.+...- ...+++..+. ..++|.+ +++||+|+.+..+. ...+.+.+...++
T Consensus 89 ~~~~~~~~~~aD~~llVvda~~g~~~-qt~e~l~~~~---~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~ 164 (396)
T PRK12735 89 VKNMITGAAQMDGAILVVSAADGPMP-QTREHILLAR---QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCch-hHHHHHHHHH---HcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence 87777778899999999999864321 2223333322 2457855 57899998642211 1224555555543
Q ss_pred ---CeEEEeccCCCC----------CHHHHHHHHHHHH
Q 030524 146 ---VMFIETSAKAGF----------NIKLCCHTLNSLI 170 (175)
Q Consensus 146 ---~~~~~~s~~~~~----------~v~~~f~~l~~~~ 170 (175)
++++++|+.+|. ++.++++.|.+.+
T Consensus 165 ~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 165 GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred cCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 689999999984 5677777776543
No 224
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.79 E-value=4e-18 Score=129.38 Aligned_cols=148 Identities=16% Similarity=0.126 Sum_probs=96.9
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCC------C------C--cccccceeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF------D------N--TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~------~------~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 71 (175)
....++|+++|+.++|||||+++|++... . . ......+.+........+.....+.+|||||+++|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 45679999999999999999999974210 0 0 00111333333444445555567899999999988
Q ss_pred cccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCCCCC---HHHHHHHHHhcC--
Q 030524 72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIV-LVGNKTDLVEKRQVS---IEEGEAKSRELN-- 145 (175)
Q Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i-iv~nk~D~~~~~~~~---~~~~~~~~~~~~-- 145 (175)
...+.....++|++++|+|+.++..-+ ..+.+..+.. .++|.+ +++||+|+.+..+.. ..+.+.++..++
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~ 164 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPMPQ-TREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFP 164 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 876666677899999999998642221 2223333322 357755 679999986432211 234556666654
Q ss_pred ---CeEEEeccCCCC
Q 030524 146 ---VMFIETSAKAGF 157 (175)
Q Consensus 146 ---~~~~~~s~~~~~ 157 (175)
++++++|+.+|.
T Consensus 165 ~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 165 GDDTPIIRGSALKAL 179 (394)
T ss_pred ccCccEEECcccccc
Confidence 689999999875
No 225
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.78 E-value=8.2e-18 Score=121.72 Aligned_cols=142 Identities=13% Similarity=0.177 Sum_probs=94.4
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCCc----------ccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc-----
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNT----------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS----- 73 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----- 73 (175)
.++|+++|.+|+|||||+|+|++...... ..++.........+..++..+.+.+|||||..+...
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 58999999999999999999998765433 234444555566666678788999999999443211
Q ss_pred ---------------------ccccccc--CCcEEEEEEECCChhhHHhH-HHHHHHHHHhcCCCCcEEEEEeCCCCCC-
Q 030524 74 ---------------------LIPSYIR--DSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVE- 128 (175)
Q Consensus 74 ---------------------~~~~~~~--~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nk~D~~~- 128 (175)
.....+. .+|+++|+++.+.. .+... ...++.+. ..+|+++|+||+|+..
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~----~~v~vi~VinK~D~l~~ 158 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS----KRVNIIPVIAKADTLTP 158 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh----ccCCEEEEEECCCcCCH
Confidence 1112233 46888888886642 12121 22222222 3689999999999854
Q ss_pred -CCCCCHHHHHHHHHhcCCeEEEeccCC
Q 030524 129 -KRQVSIEEGEAKSRELNVMFIETSAKA 155 (175)
Q Consensus 129 -~~~~~~~~~~~~~~~~~~~~~~~s~~~ 155 (175)
+.........+.+..++++++......
T Consensus 159 ~e~~~~k~~i~~~l~~~~i~~~~~~~~~ 186 (276)
T cd01850 159 EELKEFKQRIMEDIEEHNIKIYKFPEDE 186 (276)
T ss_pred HHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence 233345567777888899888776543
No 226
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.78 E-value=8.7e-18 Score=118.15 Aligned_cols=155 Identities=18% Similarity=0.213 Sum_probs=96.5
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCCCCccccc-----------------------ceeeEEEE-------------EEEEC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQAT-----------------------IGIDFLSK-------------TMYLE 54 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~-----------------------~~~~~~~~-------------~~~~~ 54 (175)
||+++|+.++|||||++++..+.+....... .+++.... .-.+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 6899999999999999999876543321110 00110000 00112
Q ss_pred CeEEEEEEEeCCCccccccccccccc--CCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC
Q 030524 55 DRTVRLQLWDTAGQERFRSLIPSYIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV 132 (175)
Q Consensus 55 ~~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~ 132 (175)
.....+.+.|+||+++|.......+. .+|++++|+|+..+.. .....++..+.. .++|+++++||+|+.++...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~~ 156 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALA---LNIPVFVVVTKIDLAPANIL 156 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEECccccCHHHH
Confidence 22357899999999988765544443 6899999999876532 122333333322 46899999999998543221
Q ss_pred C--HHHHHHHHH--------------------------hcCCeEEEeccCCCCCHHHHHHHHHHH
Q 030524 133 S--IEEGEAKSR--------------------------ELNVMFIETSAKAGFNIKLCCHTLNSL 169 (175)
Q Consensus 133 ~--~~~~~~~~~--------------------------~~~~~~~~~s~~~~~~v~~~f~~l~~~ 169 (175)
. ..+...+.. ...+|++.+|+.+|+|++++...|...
T Consensus 157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~l 221 (224)
T cd04165 157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNLL 221 (224)
T ss_pred HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHhc
Confidence 1 112222222 112489999999999999999887653
No 227
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=2.1e-17 Score=125.25 Aligned_cols=157 Identities=19% Similarity=0.240 Sum_probs=119.7
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECC-eEEEEEEEeCCCcccccccccccccCCcEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (175)
.++.-|.++|+...|||||++.+-+...........+.+...+.+..+- ..-.+.|+|||||+-|..+...-..-+|++
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa 82 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA 82 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence 3566789999999999999999988877666566666677777766642 223689999999999999999988999999
Q ss_pred EEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcC---------CeEEEeccCCC
Q 030524 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN---------VMFIETSAKAG 156 (175)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~s~~~~ 156 (175)
|+|+++.+.- ..+..+.+......++|+++++||+|.. ..+.+.......++| ..++++||++|
T Consensus 83 ILVVa~dDGv----~pQTiEAI~hak~a~vP~iVAiNKiDk~---~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg 155 (509)
T COG0532 83 ILVVAADDGV----MPQTIEAINHAKAAGVPIVVAINKIDKP---EANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTG 155 (509)
T ss_pred EEEEEccCCc----chhHHHHHHHHHHCCCCEEEEEecccCC---CCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCC
Confidence 9999998752 1222233333334689999999999976 344455555555554 36999999999
Q ss_pred CCHHHHHHHHHHHH
Q 030524 157 FNIKLCCHTLNSLI 170 (175)
Q Consensus 157 ~~v~~~f~~l~~~~ 170 (175)
+|+.+|+..++-..
T Consensus 156 ~Gi~eLL~~ill~a 169 (509)
T COG0532 156 EGIDELLELILLLA 169 (509)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999876544
No 228
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.78 E-value=1.3e-18 Score=132.32 Aligned_cols=168 Identities=23% Similarity=0.296 Sum_probs=122.8
Q ss_pred CCCCCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 030524 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 80 (175)
Q Consensus 1 ~~~~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 80 (175)
|+.......+||+++|+.|+|||||+-.++...+.++..+--. .......+.-..+..++.|++..++-+......++
T Consensus 1 ~~~~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~--~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~Eir 78 (625)
T KOG1707|consen 1 MSDDETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP--RILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIR 78 (625)
T ss_pred CCCccCccceEEEEECCCCccHHHHHHHHHhhhccccccccCC--ccccCCccCcCcCceEEEecccccchhHHHHHHHh
Confidence 4555667889999999999999999999998876655333221 11111333334456899999866655555577789
Q ss_pred CCcEEEEEEECCChhhHHhH-HHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCCC-HHHHHHHHHhcC-C-eEEEeccC
Q 030524 81 DSSVAVVVYDVASRQSFLNT-SKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVS-IEEGEAKSRELN-V-MFIETSAK 154 (175)
Q Consensus 81 ~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~--~~~~~iiv~nk~D~~~~~~~~-~~~~~~~~~~~~-~-~~~~~s~~ 154 (175)
++|++.++|+.+++++++.+ ..|+..++...+ .++|+|+|+||.|........ ..........+. + .-++|||+
T Consensus 79 kA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~ 158 (625)
T KOG1707|consen 79 KADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSAL 158 (625)
T ss_pred hcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhh
Confidence 99999999999999999996 558888877664 689999999999986543332 223444444443 2 45889999
Q ss_pred CCCCHHHHHHHHHHHH
Q 030524 155 AGFNIKLCCHTLNSLI 170 (175)
Q Consensus 155 ~~~~v~~~f~~l~~~~ 170 (175)
+-.++.++|.+..+.+
T Consensus 159 ~~~n~~e~fYyaqKaV 174 (625)
T KOG1707|consen 159 TLANVSELFYYAQKAV 174 (625)
T ss_pred hhhhhHhhhhhhhhee
Confidence 9999999999865544
No 229
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.77 E-value=2.3e-17 Score=111.34 Aligned_cols=162 Identities=19% Similarity=0.183 Sum_probs=107.4
Q ss_pred CCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCc----------ccccc
Q 030524 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ----------ERFRS 73 (175)
Q Consensus 4 ~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~ 73 (175)
.+......|+++|-+|+|||||+|+|+++....-...+.|.+.......+++. +.+.|.||. +....
T Consensus 19 ~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~ 95 (200)
T COG0218 19 YPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKK 95 (200)
T ss_pred CCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHH
Confidence 34556689999999999999999999997744444455555555555555553 789999993 33344
Q ss_pred ccccccc---CCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCH--HHHH-HHHHhcCCe
Q 030524 74 LIPSYIR---DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI--EEGE-AKSRELNVM 147 (175)
Q Consensus 74 ~~~~~~~---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~--~~~~-~~~~~~~~~ 147 (175)
+...|+. +-.++++++|+..+- .......-++..+ .++|+++++||+|.....+... .... .+.......
T Consensus 96 ~i~~YL~~R~~L~~vvlliD~r~~~--~~~D~em~~~l~~--~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~ 171 (200)
T COG0218 96 LIEEYLEKRANLKGVVLLIDARHPP--KDLDREMIEFLLE--LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDD 171 (200)
T ss_pred HHHHHHhhchhheEEEEEEECCCCC--cHHHHHHHHHHHH--cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCcc
Confidence 5556654 346888899987653 2322222333333 4799999999999765433321 1111 222223333
Q ss_pred --EEEeccCCCCCHHHHHHHHHHHHhh
Q 030524 148 --FIETSAKAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 148 --~~~~s~~~~~~v~~~f~~l~~~~~~ 172 (175)
++..|+..+.|++++...|.+.+..
T Consensus 172 ~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 172 QWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred ceEEEEecccccCHHHHHHHHHHHhhc
Confidence 7888999999999999998887654
No 230
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.77 E-value=2.2e-17 Score=118.92 Aligned_cols=115 Identities=23% Similarity=0.254 Sum_probs=80.0
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCC-----------------Ccccc---cceeeEEEEEEEECCeEEEEEEEeCCCcc
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFD-----------------NTYQA---TIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~-----------------~~~~~---~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 69 (175)
.+|+++|++|+|||||+++++...-. .++.+ ..+.+.......++....++.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 57999999999999999999853110 00000 12333444444555566789999999999
Q ss_pred cccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 030524 70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (175)
Q Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~ 128 (175)
+|.......+..+|++|+|+|++++.... ...++.... ..++|+++++||+|+.+
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~---~~~~P~iivvNK~D~~~ 137 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCR---LRGIPIITFINKLDREG 137 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHH---hcCCCEEEEEECCccCC
Confidence 88887777889999999999998753221 223333222 24789999999999754
No 231
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.76 E-value=1.1e-17 Score=117.24 Aligned_cols=113 Identities=20% Similarity=0.237 Sum_probs=77.7
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCCC--C--------------cccccceeeEEEEEEEEC--------CeEEEEEEEeCC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKFD--N--------------TYQATIGIDFLSKTMYLE--------DRTVRLQLWDTA 66 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~~--~--------------~~~~~~~~~~~~~~~~~~--------~~~~~~~i~D~~ 66 (175)
+|+++|+.++|||||+++|+...-. . +.....++.........+ +..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 7999999999999999999864210 0 000111111111111222 446789999999
Q ss_pred CcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524 67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (175)
Q Consensus 67 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~ 127 (175)
|+.+|.......+..+|++++|+|+.++...+.. ..+.... ..++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~---~~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQAL---KERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHHHH---HcCCCEEEEEECCCcc
Confidence 9999999999999999999999999987554432 2222222 2468999999999975
No 232
>CHL00071 tufA elongation factor Tu
Probab=99.76 E-value=2.7e-17 Score=125.31 Aligned_cols=150 Identities=16% Similarity=0.139 Sum_probs=97.6
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCCC--------------CcccccceeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD--------------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 71 (175)
....++|+++|++++|||||+++|++.... .......+.+..............+.+.||||+.+|
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 345699999999999999999999874110 001111333333333334334457889999999988
Q ss_pred cccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCC---CHHHHHHHHHhcC--
Q 030524 72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQV---SIEEGEAKSRELN-- 145 (175)
Q Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nk~D~~~~~~~---~~~~~~~~~~~~~-- 145 (175)
...+...+..+|++++|+|+..... ......+..+. . .++| +++++||+|+.+..+. ...+...+....+
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~-~--~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~ 164 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAK-Q--VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFP 164 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHH-H--cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 7777777889999999999876422 12223333222 2 3578 7788999998643221 1234455555443
Q ss_pred ---CeEEEeccCCCCCH
Q 030524 146 ---VMFIETSAKAGFNI 159 (175)
Q Consensus 146 ---~~~~~~s~~~~~~v 159 (175)
++++++|+.+|.++
T Consensus 165 ~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 165 GDDIPIVSGSALLALEA 181 (409)
T ss_pred CCcceEEEcchhhcccc
Confidence 68999999998743
No 233
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.75 E-value=4.4e-17 Score=112.81 Aligned_cols=156 Identities=13% Similarity=0.147 Sum_probs=91.8
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCCccccccee---eEEEEEEEECCeEEEEEEEeCCCcccccccccc-----ccc
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGI---DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS-----YIR 80 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~-----~~~ 80 (175)
+++|+++|++|+|||||+|.+++.........+.+. +.....+... ....+.+||+||.......... .+.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 479999999999999999999986543322222111 1011111111 1236899999996543222222 256
Q ss_pred CCcEEEEEEECCChhhHHhH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-----------CCHHHHHHHH----Hhc
Q 030524 81 DSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ-----------VSIEEGEAKS----REL 144 (175)
Q Consensus 81 ~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~-----------~~~~~~~~~~----~~~ 144 (175)
++|+++++.+ + ++... ..+++.+... +.|+++|+||+|+....+ ...++.++.+ ...
T Consensus 80 ~~d~~l~v~~--~--~~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~ 152 (197)
T cd04104 80 EYDFFIIISS--T--RFSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA 152 (197)
T ss_pred CcCEEEEEeC--C--CCCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc
Confidence 7899888754 2 23343 3344444432 589999999999843211 1111111111 122
Q ss_pred C---CeEEEeccC--CCCCHHHHHHHHHHHHhh
Q 030524 145 N---VMFIETSAK--AGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 145 ~---~~~~~~s~~--~~~~v~~~f~~l~~~~~~ 172 (175)
+ .+++.+|+. .+.++..+.+.+...+..
T Consensus 153 ~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 153 GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 2 378999998 578888888888776653
No 234
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.75 E-value=9.7e-18 Score=128.57 Aligned_cols=152 Identities=17% Similarity=0.199 Sum_probs=103.0
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCC--CC---------------------------cccccceeeEEEEEEEECCe
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF--DN---------------------------TYQATIGIDFLSKTMYLEDR 56 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~ 56 (175)
...+++|+++|+.++|||||+.+|+...- .. ......+++...........
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 34579999999999999999999875211 00 00111233333334445555
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHH-------hHHHHHHHHHHhcCCCCc-EEEEEeCCCCCC
Q 030524 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFL-------NTSKWIDEVRTERGSDVI-IVLVGNKTDLVE 128 (175)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~-~iiv~nk~D~~~ 128 (175)
...+.++|+|||++|...+...+..+|++|+|+|+++. .|+ ..++.+... ...++| +++++||+|+.+
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~---~~~gi~~iIV~vNKmD~~~ 159 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLA---FTLGVKQMICCCNKMDATT 159 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHH---HHcCCCcEEEEEEcccCCc
Confidence 67899999999999999999999999999999999863 232 223322222 124574 688899999752
Q ss_pred CC------CCCHHHHHHHHHhcC-----CeEEEeccCCCCCHHH
Q 030524 129 KR------QVSIEEGEAKSRELN-----VMFIETSAKAGFNIKL 161 (175)
Q Consensus 129 ~~------~~~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~ 161 (175)
.. ....++.+.++...+ ++++++|+++|+|+.+
T Consensus 160 ~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 160 PKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 11 112445666666665 5799999999999853
No 235
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.75 E-value=6.3e-17 Score=115.46 Aligned_cols=155 Identities=19% Similarity=0.200 Sum_probs=107.3
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccc-------cccccC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI-------PSYIRD 81 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-------~~~~~~ 81 (175)
..|.++|-||+|||||++.+..-+.. .+|..|+ .....-.+..++ ...+.+-|.||--+-.++. -.-++.
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTT-L~P~iG~v~ydd-f~q~tVADiPGiI~GAh~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTT-LRPHIGTVNYDD-FSQITVADIPGIIEGAHMNKGLGYKFLRHIER 274 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceee-eccccceeeccc-cceeEeccCccccccccccCcccHHHHHHHHh
Confidence 45789999999999999999886543 3444333 222222222222 2248999999943322221 223578
Q ss_pred CcEEEEEEECCCh---hhHHhHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC-eEEEeccCC
Q 030524 82 SSVAVVVYDVASR---QSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKA 155 (175)
Q Consensus 82 ~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~--~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~ 155 (175)
|+.++||+|++.+ ..++.++.+..++..+.. .+.|.++|+||+|+.+.. .....++++++.- .++++||++
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~pvsA~~ 351 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVPVSAKS 351 (366)
T ss_pred hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEEeeecc
Confidence 9999999999988 777777777777766654 678999999999974221 1224566666654 489999999
Q ss_pred CCCHHHHHHHHHHH
Q 030524 156 GFNIKLCCHTLNSL 169 (175)
Q Consensus 156 ~~~v~~~f~~l~~~ 169 (175)
++++.++.+.|.+.
T Consensus 352 ~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 352 GEGLEELLNGLREL 365 (366)
T ss_pred ccchHHHHHHHhhc
Confidence 99999999887653
No 236
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.75 E-value=1.3e-17 Score=128.74 Aligned_cols=154 Identities=20% Similarity=0.221 Sum_probs=96.2
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcc-------------cc------------------cceeeEEEEEEEEC
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTY-------------QA------------------TIGIDFLSKTMYLE 54 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~-------------~~------------------~~~~~~~~~~~~~~ 54 (175)
....++|+++|++++|||||+++|+...-.... .. ..+++.........
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 456799999999999999999999864211000 00 11122222222333
Q ss_pred CeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCH
Q 030524 55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI 134 (175)
Q Consensus 55 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~ 134 (175)
.....+.++||||+++|...+...+..+|++++|+|+..+..-+ ....+ .+....+ ..|+++++||+|+.+..+...
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~q-t~~~~-~l~~~lg-~~~iIvvvNKiD~~~~~~~~~ 180 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQ-TRRHS-FIATLLG-IKHLVVAVNKMDLVDYSEEVF 180 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcccc-chHHH-HHHHHhC-CCceEEEEEeeccccchhHHH
Confidence 34457899999999988766665679999999999987642211 11111 1222222 246888999999864332112
Q ss_pred H----HHHHHHHhc----CCeEEEeccCCCCCHHHH
Q 030524 135 E----EGEAKSREL----NVMFIETSAKAGFNIKLC 162 (175)
Q Consensus 135 ~----~~~~~~~~~----~~~~~~~s~~~~~~v~~~ 162 (175)
. +...+.... .++++++|+++|+|+.++
T Consensus 181 ~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 181 ERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 2 222223333 368999999999998764
No 237
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=3.8e-17 Score=123.78 Aligned_cols=163 Identities=18% Similarity=0.175 Sum_probs=118.7
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCC--CC-----------cccccceeeEEEEEE---EECCeEEEEEEEeCCCccc
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF--DN-----------TYQATIGIDFLSKTM---YLEDRTVRLQLWDTAGQER 70 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~--~~-----------~~~~~~~~~~~~~~~---~~~~~~~~~~i~D~~G~~~ 70 (175)
.+-.++.++-+-..|||||.++|+...- .. +-....+++...... ..++..+.++++|||||-+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 4557899999999999999999986321 11 011223334333322 2246678999999999999
Q ss_pred ccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCC-HHHHHHHHHhcCCeEE
Q 030524 71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS-IEEGEAKSRELNVMFI 149 (175)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~-~~~~~~~~~~~~~~~~ 149 (175)
|......-+.-|+++++|+|++.+-.-+.+..++..+. .+..+|.|+||+|+..++... ...........+.+.+
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i 213 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVI 213 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceE
Confidence 99999999999999999999998766666666666665 478899999999986543211 2222333333345899
Q ss_pred EeccCCCCCHHHHHHHHHHHHhhh
Q 030524 150 ETSAKAGFNIKLCCHTLNSLITVC 173 (175)
Q Consensus 150 ~~s~~~~~~v~~~f~~l~~~~~~~ 173 (175)
.+||+.|.|+.++++.+++.+.+.
T Consensus 214 ~vSAK~G~~v~~lL~AII~rVPpP 237 (650)
T KOG0462|consen 214 YVSAKTGLNVEELLEAIIRRVPPP 237 (650)
T ss_pred EEEeccCccHHHHHHHHHhhCCCC
Confidence 999999999999999999887543
No 238
>COG2262 HflX GTPases [General function prediction only]
Probab=99.74 E-value=1.5e-16 Score=117.38 Aligned_cols=159 Identities=19% Similarity=0.169 Sum_probs=110.6
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc--c------ccccc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--L------IPSYI 79 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--~------~~~~~ 79 (175)
.-..|.++|-+|+|||||+|.|.+........-..+.+.....+.+.+ +..+.+.||.|.-+... + +-...
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~ 269 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEV 269 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHHh
Confidence 347899999999999999999998665544444444565666666665 34789999999432111 1 11225
Q ss_pred cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCH
Q 030524 80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159 (175)
Q Consensus 80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 159 (175)
..+|.++.|+|+++|...+.+..-...+......++|++++.||.|+..+.. ....+....-..+.+||++|+|+
T Consensus 270 ~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~~~~v~iSA~~~~gl 344 (411)
T COG2262 270 KEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-----ILAELERGSPNPVFISAKTGEGL 344 (411)
T ss_pred hcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-----hhhhhhhcCCCeEEEEeccCcCH
Confidence 6899999999999996555555544444433336799999999999764433 11111111115899999999999
Q ss_pred HHHHHHHHHHHhh
Q 030524 160 KLCCHTLNSLITV 172 (175)
Q Consensus 160 ~~~f~~l~~~~~~ 172 (175)
+.+...|.+.+..
T Consensus 345 ~~L~~~i~~~l~~ 357 (411)
T COG2262 345 DLLRERIIELLSG 357 (411)
T ss_pred HHHHHHHHHHhhh
Confidence 9999998887764
No 239
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.74 E-value=8.8e-17 Score=115.38 Aligned_cols=159 Identities=21% Similarity=0.220 Sum_probs=106.2
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCc-c-----cccc---ccc
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ-E-----RFRS---LIP 76 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-~-----~~~~---~~~ 76 (175)
.....|++.|.||||||||++.+..-... ..|..|. ...+.-.... +...++++||||. + +..- .+.
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTT-K~i~vGhfe~--~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~ 242 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTT-KGIHVGHFER--GYLRIQVIDTPGLLDRPLEERNEIERQAIL 242 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccc-cceeEeeeec--CCceEEEecCCcccCCChHHhcHHHHHHHH
Confidence 45688999999999999999999987765 3343333 2333333322 3357999999992 1 1111 111
Q ss_pred ccccCCcEEEEEEECCC--hhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcC-CeEEEecc
Q 030524 77 SYIRDSSVAVVVYDVAS--RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSA 153 (175)
Q Consensus 77 ~~~~~~d~~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~ 153 (175)
..-.-.++++|++|.+. ..+.+....++.++..... .|+++|.||.|+.+.... ++.......-+ .....+++
T Consensus 243 AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~e~~--~~~~~~~~~~~~~~~~~~~~ 318 (346)
T COG1084 243 ALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADEEKL--EEIEASVLEEGGEEPLKISA 318 (346)
T ss_pred HHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccchhHH--HHHHHHHHhhccccccceee
Confidence 11123689999999984 4577778888888888764 899999999998643332 23333333334 35778888
Q ss_pred CCCCCHHHHHHHHHHHHhh
Q 030524 154 KAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 154 ~~~~~v~~~f~~l~~~~~~ 172 (175)
..+.+++.+-..+...+..
T Consensus 319 ~~~~~~d~~~~~v~~~a~~ 337 (346)
T COG1084 319 TKGCGLDKLREEVRKTALE 337 (346)
T ss_pred eehhhHHHHHHHHHHHhhc
Confidence 8888888777766665443
No 240
>PLN03126 Elongation factor Tu; Provisional
Probab=99.74 E-value=5.2e-17 Score=125.17 Aligned_cols=148 Identities=17% Similarity=0.135 Sum_probs=97.1
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCC------CCC--------cccccceeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDK------FDN--------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 72 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 72 (175)
...++|+++|++++|||||+++|+... ... ......+++.......++.....+.++|+||+++|.
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~ 158 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 158 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHH
Confidence 457999999999999999999998521 110 112223333333333333344578999999999998
Q ss_pred ccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCC---CHHHHHHHHHhc----
Q 030524 73 SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQV---SIEEGEAKSREL---- 144 (175)
Q Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nk~D~~~~~~~---~~~~~~~~~~~~---- 144 (175)
..+...+..+|++++|+|+.+...- ..++++..+.. .++| +++++||+|+.+..+. ...+...+....
T Consensus 159 ~~~~~g~~~aD~ailVVda~~G~~~-qt~e~~~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~ 234 (478)
T PLN03126 159 KNMITGAAQMDGAILVVSGADGPMP-QTKEHILLAKQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPG 234 (478)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 8777778899999999998865322 22333333322 3677 6788999998642211 122344455443
Q ss_pred -CCeEEEeccCCCCC
Q 030524 145 -NVMFIETSAKAGFN 158 (175)
Q Consensus 145 -~~~~~~~s~~~~~~ 158 (175)
+++++.+|+.+|.+
T Consensus 235 ~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 235 DDIPIISGSALLALE 249 (478)
T ss_pred CcceEEEEEcccccc
Confidence 46899999998853
No 241
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.74 E-value=6e-17 Score=126.24 Aligned_cols=117 Identities=22% Similarity=0.248 Sum_probs=80.9
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCC--C---------------Cc---ccccceeeEEEEEEEECCeEEEEEEEeCC
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF--D---------------NT---YQATIGIDFLSKTMYLEDRTVRLQLWDTA 66 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~--~---------------~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 66 (175)
.+..+|+++|++++|||||.++|+...- . .+ .....+.++......++...+.+.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 3567999999999999999999974110 0 00 00112333333334444455789999999
Q ss_pred CcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524 67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (175)
Q Consensus 67 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~ 127 (175)
|+.+|.......+..+|++|+|+|+++.... ....++..... .++|+++++||+|+.
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKLDRD 144 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECCccc
Confidence 9999988777788999999999999875322 12333332222 579999999999975
No 242
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.73 E-value=4.2e-17 Score=125.15 Aligned_cols=153 Identities=20% Similarity=0.197 Sum_probs=98.9
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCC--CCC---------------------------cccccceeeEEEEEEEECCe
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDK--FDN---------------------------TYQATIGIDFLSKTMYLEDR 56 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 56 (175)
....++|+++|+.++|||||+.+|+... ... ......+.+.......+...
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 3456999999999999999999997621 110 00011223333333444555
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEECCChh---hH---HhHHHHHHHHHHhcCCCCc-EEEEEeCCCCC--
Q 030524 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ---SF---LNTSKWIDEVRTERGSDVI-IVLVGNKTDLV-- 127 (175)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~-~iiv~nk~D~~-- 127 (175)
...+.++|+|||.+|...+...+..+|++++|+|+..+. .+ ...++.+..+.. .++| +++++||+|..
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~---~gi~~iiv~vNKmD~~~~ 160 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT---LGVKQMIVCINKMDDKTV 160 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH---cCCCeEEEEEEccccccc
Confidence 678999999999999888888889999999999998652 11 122333222222 3666 56899999943
Q ss_pred CCCCCC----HHHHHHHHHhc-----CCeEEEeccCCCCCHHH
Q 030524 128 EKRQVS----IEEGEAKSREL-----NVMFIETSAKAGFNIKL 161 (175)
Q Consensus 128 ~~~~~~----~~~~~~~~~~~-----~~~~~~~s~~~~~~v~~ 161 (175)
+..+.. ..+...+.... +++++++|+.+|+|+.+
T Consensus 161 ~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 161 NYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 211111 22333333333 36799999999999864
No 243
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.73 E-value=4.2e-17 Score=124.12 Aligned_cols=149 Identities=22% Similarity=0.250 Sum_probs=93.3
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCC--C-------------cc----------------cccceeeEEEEEEEECCeEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFD--N-------------TY----------------QATIGIDFLSKTMYLEDRTV 58 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~--~-------------~~----------------~~~~~~~~~~~~~~~~~~~~ 58 (175)
++|+++|+.++|||||+++|+...-. . .. ....+++.......+.....
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999999753211 0 00 00111222222233333445
Q ss_pred EEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCC----H
Q 030524 59 RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS----I 134 (175)
Q Consensus 59 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~----~ 134 (175)
++.++||||+++|...+...+..+|++++|+|+..+..-+. .+.+. +....+ ..++++++||+|+.+..... .
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt-~~~~~-~~~~~~-~~~iivviNK~D~~~~~~~~~~~i~ 157 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQT-RRHSY-IASLLG-IRHVVLAVNKMDLVDYDEEVFENIK 157 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcccc-HHHHH-HHHHcC-CCcEEEEEEecccccchHHHHHHHH
Confidence 78999999999987766677889999999999876532211 22112 222222 23588899999986432211 1
Q ss_pred HHHHHHHHhcC---CeEEEeccCCCCCHHH
Q 030524 135 EEGEAKSRELN---VMFIETSAKAGFNIKL 161 (175)
Q Consensus 135 ~~~~~~~~~~~---~~~~~~s~~~~~~v~~ 161 (175)
++...+.+..+ ++++++||++|+|+.+
T Consensus 158 ~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 158 KDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 22233334443 4799999999999875
No 244
>PRK00049 elongation factor Tu; Reviewed
Probab=99.73 E-value=1.7e-16 Score=120.49 Aligned_cols=160 Identities=16% Similarity=0.128 Sum_probs=102.6
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCCC--------------CcccccceeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD--------------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 71 (175)
....++|+++|+.++|||||+++|++.... .......+.+..............+.+.||||+.+|
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY 88 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence 356799999999999999999999873110 000112333333334444444457899999999888
Q ss_pred cccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCCCC---CHHHHHHHHHhc---
Q 030524 72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIV-LVGNKTDLVEKRQV---SIEEGEAKSREL--- 144 (175)
Q Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i-iv~nk~D~~~~~~~---~~~~~~~~~~~~--- 144 (175)
.......+..+|++++|+|+..+.. .....++..+.. .++|.+ +++||+|+.+..+. ...+...+....
T Consensus 89 ~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~ 164 (396)
T PRK00049 89 VKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence 8777777889999999999976532 122333333322 357875 57899998642211 122333444433
Q ss_pred --CCeEEEeccCCCC----------CHHHHHHHHHHH
Q 030524 145 --NVMFIETSAKAGF----------NIKLCCHTLNSL 169 (175)
Q Consensus 145 --~~~~~~~s~~~~~----------~v~~~f~~l~~~ 169 (175)
+++++.+|+++|. ++.++++.|.+.
T Consensus 165 ~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~ 201 (396)
T PRK00049 165 GDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY 201 (396)
T ss_pred ccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence 3689999999875 456666666553
No 245
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=3.7e-17 Score=120.51 Aligned_cols=157 Identities=23% Similarity=0.272 Sum_probs=106.9
Q ss_pred CCCCceeEEEECCCCCCHHHHHHHHhcCCC--CC---------------------------cccccceeeEEEEEEEECC
Q 030524 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKF--DN---------------------------TYQATIGIDFLSKTMYLED 55 (175)
Q Consensus 5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~ 55 (175)
....+++++++|+..+|||||+.+|+...- +. ......+++.......++.
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 345679999999999999999999986421 00 0111244556666666777
Q ss_pred eEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChh---hHHhHHHHHHHHHHhcCC-CCcEEEEEeCCCCCCCCC
Q 030524 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ---SFLNTSKWIDEVRTERGS-DVIIVLVGNKTDLVEKRQ 131 (175)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~-~~~~iiv~nk~D~~~~~~ 131 (175)
+.+.+.+.|+|||.+|-..+-.-..++|+.|+|+|+.+.+ +|.......+++....-. -..+++++||+|+.+..+
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde 162 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDE 162 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCH
Confidence 7788999999999999998888899999999999998763 222211222222222222 344677789999876544
Q ss_pred CCHHHH----HHHHHhcC-----CeEEEeccCCCCCHHH
Q 030524 132 VSIEEG----EAKSRELN-----VMFIETSAKAGFNIKL 161 (175)
Q Consensus 132 ~~~~~~----~~~~~~~~-----~~~~~~s~~~~~~v~~ 161 (175)
...++. ..+.+..| ++|+++|+..|+|+.+
T Consensus 163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 333332 22333333 5799999999999864
No 246
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.73 E-value=1.6e-17 Score=120.25 Aligned_cols=131 Identities=17% Similarity=0.190 Sum_probs=82.5
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCCCCcc-------------cc---cceeeEEEEEEEECCeEEEEEEEeCCCccccccc
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKFDNTY-------------QA---TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL 74 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~-------------~~---~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 74 (175)
+|+++|++|+|||||+++++...-.... .+ ..+.........+....+.+.+|||||+.++...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 5899999999999999999753211000 00 0111111111222223357899999999988888
Q ss_pred ccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCe
Q 030524 75 IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM 147 (175)
Q Consensus 75 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~ 147 (175)
+...+..+|++++|+|+++.........| ..+.. .++|.++++||+|..... .......+...++.+
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~---~~~p~iivvNK~D~~~~~--~~~~~~~l~~~~~~~ 147 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE---AGIPRIIFINKMDRERAD--FDKTLAALQEAFGRP 147 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCccCCCC--HHHHHHHHHHHhCCC
Confidence 88889999999999999876544333322 22222 468999999999975431 222333444444543
No 247
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.72 E-value=8.4e-17 Score=128.64 Aligned_cols=154 Identities=22% Similarity=0.224 Sum_probs=95.6
Q ss_pred CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCc-------------ccc------------------cceeeEEEEEEEE
Q 030524 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT-------------YQA------------------TIGIDFLSKTMYL 53 (175)
Q Consensus 5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~-------------~~~------------------~~~~~~~~~~~~~ 53 (175)
+....++|+++|++++|||||+++|+...-... ... ..+++........
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 445679999999999999999999986421100 000 0111111222223
Q ss_pred CCeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCC
Q 030524 54 EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS 133 (175)
Q Consensus 54 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~ 133 (175)
.....++.++||||+++|...+...+..+|++++|+|+..+..-+ ....+..+. .. ...++++++||+|+.+..+..
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~-t~e~~~~~~-~~-~~~~iivvvNK~D~~~~~~~~ 176 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQ-TRRHSFIAS-LL-GIRHVVLAVNKMDLVDYDQEV 176 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcccc-CHHHHHHHH-Hh-CCCeEEEEEEecccccchhHH
Confidence 333456889999999988766666788999999999997653211 122222222 11 235688899999986422211
Q ss_pred H----HHHHHHHHhcC---CeEEEeccCCCCCHHH
Q 030524 134 I----EEGEAKSRELN---VMFIETSAKAGFNIKL 161 (175)
Q Consensus 134 ~----~~~~~~~~~~~---~~~~~~s~~~~~~v~~ 161 (175)
. .+...+....+ ++++++||++|+|+.+
T Consensus 177 ~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 177 FDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 1 22333344444 4699999999999874
No 248
>PLN03127 Elongation factor Tu; Provisional
Probab=99.72 E-value=1.8e-16 Score=121.56 Aligned_cols=159 Identities=17% Similarity=0.133 Sum_probs=99.6
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcC------CC----------CCcccccceeeEEEEEEEECCeEEEEEEEeCCCcc
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYD------KF----------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 69 (175)
...+++|+++|+.++|||||+++|.+. .. ..+.. .+++........+....++.++||||+.
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~--rGiTi~~~~~~~~~~~~~i~~iDtPGh~ 135 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKA--RGITIATAHVEYETAKRHYAHVDCPGHA 135 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhh--cCceeeeeEEEEcCCCeEEEEEECCCcc
Confidence 456799999999999999999999732 10 01111 2333333444444445678999999998
Q ss_pred cccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCCC---HHHHHHHHHhc-
Q 030524 70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQVS---IEEGEAKSREL- 144 (175)
Q Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nk~D~~~~~~~~---~~~~~~~~~~~- 144 (175)
+|...+..-+..+|++++|+|+.++..- .....+..+. . .++| +++++||+|+.+..+.. ..+...+....
T Consensus 136 ~f~~~~~~g~~~aD~allVVda~~g~~~-qt~e~l~~~~-~--~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~ 211 (447)
T PLN03127 136 DYVKNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLAR-Q--VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYK 211 (447)
T ss_pred chHHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHHHHH-H--cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhC
Confidence 8877666667789999999998765321 1222222222 2 3688 46789999986422211 11222333322
Q ss_pred ----CCeEEEeccC---CCCC-------HHHHHHHHHHHH
Q 030524 145 ----NVMFIETSAK---AGFN-------IKLCCHTLNSLI 170 (175)
Q Consensus 145 ----~~~~~~~s~~---~~~~-------v~~~f~~l~~~~ 170 (175)
.++++++|+. +|.| +.++++.+.+.+
T Consensus 212 ~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 212 FPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred CCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 3688888876 4544 677777776553
No 249
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.72 E-value=1.1e-16 Score=115.51 Aligned_cols=112 Identities=21% Similarity=0.227 Sum_probs=76.5
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCCC------------------CcccccceeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKFD------------------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 72 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 72 (175)
+|+++|++|+|||||+++|+...-. .+.....+++.....+..+ ..++.++||||+.++.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWK--DHRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEEC--CEEEEEEECCCcHHHH
Confidence 5899999999999999999742110 1111122222222333333 4678999999999888
Q ss_pred ccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 030524 73 SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (175)
Q Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~ 128 (175)
..+...+..+|++|+|+|+.+...-+ ....+..+.. .++|+++++||+|+.+
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~---~~~p~ivviNK~D~~~ 130 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADR---YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHH---cCCCEEEEEECCCCCC
Confidence 88889999999999999998753222 2222232222 4689999999999864
No 250
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.72 E-value=2.3e-16 Score=117.95 Aligned_cols=166 Identities=16% Similarity=0.133 Sum_probs=121.0
Q ss_pred CCCCCCCceeEEEECCCCCCHHHHHHHHhcCCCCC-------------cccccceeeEEEEE----EE-ECCeEEEEEEE
Q 030524 2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDN-------------TYQATIGIDFLSKT----MY-LEDRTVRLQLW 63 (175)
Q Consensus 2 ~~~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~-------------~~~~~~~~~~~~~~----~~-~~~~~~~~~i~ 63 (175)
.+++..+-.+..++.+-..|||||.+|++...-.- +.....+++..... .. -+|..+.++++
T Consensus 2 ~~~~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlI 81 (603)
T COG0481 2 TFTPQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLI 81 (603)
T ss_pred CccchhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEc
Confidence 34555566788999999999999999997632110 01112233322222 22 25678999999
Q ss_pred eCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHh
Q 030524 64 DTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE 143 (175)
Q Consensus 64 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~ 143 (175)
|||||-+|......-+..|.+.++|+|++.+-.-+.+.+.+..+. .+.-++.|+||.|++.... ..-..+...-
T Consensus 82 DTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle----~~LeIiPViNKIDLP~Adp--ervk~eIe~~ 155 (603)
T COG0481 82 DTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPAADP--ERVKQEIEDI 155 (603)
T ss_pred CCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH----cCcEEEEeeecccCCCCCH--HHHHHHHHHH
Confidence 999999999999999999999999999998866666777766665 4688899999999965432 2233334444
Q ss_pred cCC---eEEEeccCCCCCHHHHHHHHHHHHhhh
Q 030524 144 LNV---MFIETSAKAGFNIKLCCHTLNSLITVC 173 (175)
Q Consensus 144 ~~~---~~~~~s~~~~~~v~~~f~~l~~~~~~~ 173 (175)
.|+ ..+.+||++|.|+.++++.+++.+-+.
T Consensus 156 iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P 188 (603)
T COG0481 156 IGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPP 188 (603)
T ss_pred hCCCcchheeEecccCCCHHHHHHHHHhhCCCC
Confidence 555 579999999999999999999887543
No 251
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=5.1e-16 Score=117.82 Aligned_cols=156 Identities=18% Similarity=0.185 Sum_probs=118.3
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
+++.-|.++|+...|||||++.|.+...........+.++....+..+. +-.++|.|||||.-|..+...-..-.|+++
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~-G~~iTFLDTPGHaAF~aMRaRGA~vtDIvV 229 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPS-GKSITFLDTPGHAAFSAMRARGANVTDIVV 229 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCC-CCEEEEecCCcHHHHHHHHhccCccccEEE
Confidence 3678899999999999999999988776555444555555566666663 357999999999999999999989999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcC---------CeEEEeccCCCC
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN---------VMFIETSAKAGF 157 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~s~~~~~ 157 (175)
+|+.+.|.- ....++.+......++|+++++||+|.+ ..+.....+....+| ++.+++||++|+
T Consensus 230 LVVAadDGV----mpQT~EaIkhAk~A~VpiVvAinKiDkp---~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~ 302 (683)
T KOG1145|consen 230 LVVAADDGV----MPQTLEAIKHAKSANVPIVVAINKIDKP---GANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGE 302 (683)
T ss_pred EEEEccCCc----cHhHHHHHHHHHhcCCCEEEEEeccCCC---CCCHHHHHHHHHHcCccHHHcCCceeEEEeecccCC
Confidence 999998762 2233344444555789999999999964 334455555544444 468999999999
Q ss_pred CHHHHHHHHHHHH
Q 030524 158 NIKLCCHTLNSLI 170 (175)
Q Consensus 158 ~v~~~f~~l~~~~ 170 (175)
|+..+-+.++-.+
T Consensus 303 nl~~L~eaill~A 315 (683)
T KOG1145|consen 303 NLDLLEEAILLLA 315 (683)
T ss_pred ChHHHHHHHHHHH
Confidence 9999988765443
No 252
>PRK13351 elongation factor G; Reviewed
Probab=99.70 E-value=2.4e-16 Score=127.22 Aligned_cols=118 Identities=21% Similarity=0.276 Sum_probs=82.3
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCC-------------Ccccc---cceeeEEEEEEEECCeEEEEEEEeCCCccc
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-------------NTYQA---TIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~-------------~~~~~---~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 70 (175)
.+..+|+++|+.|+|||||+++|+...-. .++.+ ..+.+.......+......+.+|||||+.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 45689999999999999999999853210 00000 111222222222223346899999999999
Q ss_pred ccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 030524 71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (175)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~ 128 (175)
|...+..++..+|++++|+|++++...+....| ..+.. .++|+++++||+|+..
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence 999999999999999999999987665544444 22222 4789999999999753
No 253
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.70 E-value=1.1e-15 Score=105.86 Aligned_cols=159 Identities=11% Similarity=0.103 Sum_probs=96.6
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCccc--ccceeeEEEEEEEECCeEEEEEEEeCCCcccccc-----------ccc
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQ--ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-----------LIP 76 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~~~ 76 (175)
++|+++|.+|+|||||+|.+++........ +..+.+........++ ..+.++||||..+... ...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 479999999999999999999976542221 1222222333333444 4689999999543321 112
Q ss_pred ccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCC--CCcEEEEEeCCCCCCCCCC------CHHHHHHHHHhcCCeE
Q 030524 77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGS--DVIIVLVGNKTDLVEKRQV------SIEEGEAKSRELNVMF 148 (175)
Q Consensus 77 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiv~nk~D~~~~~~~------~~~~~~~~~~~~~~~~ 148 (175)
....+.|++++|+++.+ .+- .....++.+....+. -.+++++.|+.|....... .....+....+.+-.+
T Consensus 79 ~~~~g~~~illVi~~~~-~t~-~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~ 156 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTE-EEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY 156 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCH-HHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence 23467899999999876 221 223334444444332 2567888899996443211 1234555556656555
Q ss_pred EEec-----cCCCCCHHHHHHHHHHHHhh
Q 030524 149 IETS-----AKAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 149 ~~~s-----~~~~~~v~~~f~~l~~~~~~ 172 (175)
+..+ +..+.++.++++.+.+.+..
T Consensus 157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 157 VAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 5554 34567788888887776654
No 254
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.69 E-value=4.4e-17 Score=109.76 Aligned_cols=118 Identities=18% Similarity=0.366 Sum_probs=76.0
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccc---cccCCcEE
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS---YIRDSSVA 85 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~---~~~~~d~~ 85 (175)
.-.|+++||.|+|||+|..+|..+....+..+... . ..... -......+.++|+|||++.+..... +..++.++
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~-n-~~~~~-~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMEN-N-IAYNV-NNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---SSE-E-EECCG-SSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccC-C-ceEEe-ecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 45789999999999999999999865555444421 1 11111 1223346899999999988874444 47899999
Q ss_pred EEEEECCC-hhhHHhHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCC
Q 030524 86 VVVYDVAS-RQSFLNTSKWIDEVRTERG---SDVIIVLVGNKTDLVEK 129 (175)
Q Consensus 86 i~v~d~~~-~~~~~~~~~~~~~~~~~~~---~~~~~iiv~nk~D~~~~ 129 (175)
|||+|.+. +..+..+.+++-.+..... ..+|++++.||.|+...
T Consensus 80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 99999974 4566777666666655433 78999999999998653
No 255
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.69 E-value=4.8e-16 Score=119.19 Aligned_cols=163 Identities=17% Similarity=0.139 Sum_probs=102.9
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCC---CCcccccceeeEEEEEE---------------EEC-C-----------
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF---DNTYQATIGIDFLSKTM---------------YLE-D----------- 55 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~---------------~~~-~----------- 55 (175)
....++|+++|+..+|||||+..|.+... ..+.....+.+..-... ..+ +
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 35679999999999999999999997432 11211111111100000 000 0
Q ss_pred ----eEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 030524 56 ----RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ 131 (175)
Q Consensus 56 ----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~ 131 (175)
....+.++|+|||+.|...+...+..+|++++|+|+.++..-....+.+. +....+ -.++++++||+|+.+...
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~lg-i~~iIVvlNKiDlv~~~~ 188 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIMK-LKHIIILQNKIDLVKEAQ 188 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHcC-CCcEEEEEecccccCHHH
Confidence 02368999999999998877777889999999999986421112223322 222221 245788999999864222
Q ss_pred C--CHHHHHHHHHh---cCCeEEEeccCCCCCHHHHHHHHHHHH
Q 030524 132 V--SIEEGEAKSRE---LNVMFIETSAKAGFNIKLCCHTLNSLI 170 (175)
Q Consensus 132 ~--~~~~~~~~~~~---~~~~~~~~s~~~~~~v~~~f~~l~~~~ 170 (175)
. ..++.+.+... .+++++++|+++|+|++++.+.|.+.+
T Consensus 189 ~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 189 AQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred HHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 1 12222333222 356999999999999999999988644
No 256
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.68 E-value=7.2e-16 Score=97.97 Aligned_cols=106 Identities=20% Similarity=0.251 Sum_probs=67.8
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCcccc---------ccccccccc
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF---------RSLIPSYIR 80 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~~ 80 (175)
+|+++|.+|+|||||+|+|++.... ....+..+..........++.. +.++||||...- .......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 6899999999999999999985432 2222222223333444456644 579999994321 112233348
Q ss_pred CCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeC
Q 030524 81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNK 123 (175)
Q Consensus 81 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk 123 (175)
.+|++++|+|.+++.. +.....+..+. .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence 9999999999877421 22233333332 57999999998
No 257
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.67 E-value=1.9e-15 Score=111.08 Aligned_cols=81 Identities=20% Similarity=0.377 Sum_probs=54.3
Q ss_pred EEEECCCCCCHHHHHHHHhcCCCC------CcccccceeeEEEEE---------------EEECC-eEEEEEEEeCCCc-
Q 030524 12 LVFLGDQSVGKTSIITRFMYDKFD------NTYQATIGIDFLSKT---------------MYLED-RTVRLQLWDTAGQ- 68 (175)
Q Consensus 12 i~l~G~~~~GKSsli~~l~~~~~~------~~~~~~~~~~~~~~~---------------~~~~~-~~~~~~i~D~~G~- 68 (175)
|+++|.||+|||||++++.+.... .+..+..+..+.... ...++ ..+.+.+||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999987643 222333333222110 00122 3367999999996
Q ss_pred ---ccccccccc---cccCCcEEEEEEECC
Q 030524 69 ---ERFRSLIPS---YIRDSSVAVVVYDVA 92 (175)
Q Consensus 69 ---~~~~~~~~~---~~~~~d~~i~v~d~~ 92 (175)
+++..+... .++++|++++|+|++
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 344444344 388999999999997
No 258
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.67 E-value=1.4e-15 Score=109.79 Aligned_cols=160 Identities=18% Similarity=0.101 Sum_probs=106.5
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc-------cccccccCC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------LIPSYIRDS 82 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~~~~ 82 (175)
-|.++|-||+|||||++.+..-+.. .+|..|+-......... ...-.|.+-|.||.-+-.+ ..-.-+..+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~--~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt 238 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV--DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT 238 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe--cCCCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence 4679999999999999999885543 55655554333322222 2233689999999432111 112225678
Q ss_pred cEEEEEEECCChh---hHHhHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeE-EEeccCCC
Q 030524 83 SVAVVVYDVASRQ---SFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMF-IETSAKAG 156 (175)
Q Consensus 83 d~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~--~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~ 156 (175)
-+++.|+|++..+ ..+.......++..+.. .+.|.++++||+|+....+......+.+.+..++.. +.+|+.++
T Consensus 239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~ 318 (369)
T COG0536 239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTR 318 (369)
T ss_pred heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcc
Confidence 9999999998543 24444444455555533 689999999999976555444445555565566532 23999999
Q ss_pred CCHHHHHHHHHHHHhh
Q 030524 157 FNIKLCCHTLNSLITV 172 (175)
Q Consensus 157 ~~v~~~f~~l~~~~~~ 172 (175)
+|++++...+.+.+..
T Consensus 319 ~g~~~L~~~~~~~l~~ 334 (369)
T COG0536 319 EGLDELLRALAELLEE 334 (369)
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999988877654
No 259
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=1.1e-15 Score=114.75 Aligned_cols=162 Identities=19% Similarity=0.212 Sum_probs=103.9
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCccc-ccc--------cccc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-FRS--------LIPS 77 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~--------~~~~ 77 (175)
..++|+++|+||+|||||+|.|...... ....+..+.|.....++++| +++.+.||+|-.+ -.. ..+.
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERARK 344 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHHH
Confidence 4689999999999999999999987654 33344444555566666555 7799999999543 111 1234
Q ss_pred cccCCcEEEEEEEC--CChhhHHhHHHHHHHHHHhcC------CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcC---C
Q 030524 78 YIRDSSVAVVVYDV--ASRQSFLNTSKWIDEVRTERG------SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN---V 146 (175)
Q Consensus 78 ~~~~~d~~i~v~d~--~~~~~~~~~~~~~~~~~~~~~------~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~---~ 146 (175)
.+..+|++++|+|+ ++-++-..+.+.+.....-.. ...|++++.||.|+...-.........+....+ .
T Consensus 345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~ 424 (531)
T KOG1191|consen 345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVF 424 (531)
T ss_pred HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCccc
Confidence 47789999999999 333332333444443332221 347899999999986541111111111111111 2
Q ss_pred -eEEEeccCCCCCHHHHHHHHHHHHh
Q 030524 147 -MFIETSAKAGFNIKLCCHTLNSLIT 171 (175)
Q Consensus 147 -~~~~~s~~~~~~v~~~f~~l~~~~~ 171 (175)
...++|+++++|++++-+.+.+...
T Consensus 425 ~i~~~vs~~tkeg~~~L~~all~~~~ 450 (531)
T KOG1191|consen 425 PIVVEVSCTTKEGCERLSTALLNIVE 450 (531)
T ss_pred ceEEEeeechhhhHHHHHHHHHHHHH
Confidence 4566999999999999988776553
No 260
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.65 E-value=4.1e-15 Score=120.04 Aligned_cols=117 Identities=19% Similarity=0.208 Sum_probs=80.8
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCCC--------C----------cccccceeeEEEEEEEECCeEEEEEEEeCCC
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD--------N----------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~--------~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 67 (175)
..+-.+|+++|++++|||||+++|+...-. . +.....+++.....+..+ +.++.+|||||
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~--~~~i~liDTPG 84 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK--GHRINIIDTPG 84 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC--CeEEEEEECCC
Confidence 334579999999999999999999752110 0 001122223333333334 46799999999
Q ss_pred cccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 030524 68 QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (175)
Q Consensus 68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~ 128 (175)
+.++...+...+..+|++++|+|+.+....+....| ..+.. .++|+++++||+|+..
T Consensus 85 ~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 85 HVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVW-RQANR---YEVPRIAFVNKMDKTG 141 (689)
T ss_pred CcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHH-HHHHH---cCCCEEEEEECCCCCC
Confidence 998888888889999999999999876544432222 22222 4689999999999864
No 261
>PRK12739 elongation factor G; Reviewed
Probab=99.64 E-value=7.4e-15 Score=118.53 Aligned_cols=116 Identities=20% Similarity=0.212 Sum_probs=79.6
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCC--------C----------CcccccceeeEEEEEEEECCeEEEEEEEeCCCc
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF--------D----------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~--------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 68 (175)
.+-.+|+++|++++|||||+++|+...- . .+.....+++.....+..+ ..++.++||||+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG~ 83 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--GHRINIIDTPGH 83 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC--CEEEEEEcCCCH
Confidence 3457899999999999999999975211 0 0012222333333333343 457899999999
Q ss_pred ccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 030524 69 ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (175)
Q Consensus 69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~ 128 (175)
.+|...+...+..+|++++|+|+.++..-+. ...+..+.. .++|.++++||+|+..
T Consensus 84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~---~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK---YGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCC
Confidence 9888888888999999999999987643222 222222222 4689999999999863
No 262
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.64 E-value=4.7e-15 Score=115.76 Aligned_cols=118 Identities=20% Similarity=0.207 Sum_probs=82.2
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCC-CCC-------------------cccccceeeEEEEEEEECCeEEEEEEEeCC
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDK-FDN-------------------TYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~-~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 66 (175)
.+..+|+++|++++|||||+++|+... ... ......++++......++...+.+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 456899999999999999999986421 100 001123344444445555566789999999
Q ss_pred CcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 030524 67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (175)
Q Consensus 67 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~ 128 (175)
|+.+|.......+..+|++|+|+|+++... .....+++.. .. .++|+++++||+|+..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~-~~--~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVT-RL--RDTPIFTFMNKLDRDI 146 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHH-Hh--cCCCEEEEEECccccC
Confidence 999888877778899999999999987421 1223333322 22 4789999999999753
No 263
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.63 E-value=2e-15 Score=106.19 Aligned_cols=162 Identities=16% Similarity=0.249 Sum_probs=106.3
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEE-EECCeEEEEEEEeCCCccc-------ccccccc
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTM-YLEDRTVRLQLWDTAGQER-------FRSLIPS 77 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~~-------~~~~~~~ 77 (175)
...+++|+++|.+|+|||||+|+|..+...+-..-..+.+.....+ ..++ -.+.+||+||-++ |+.....
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence 4568999999999999999999999755433221111222222222 1222 4689999999543 7777888
Q ss_pred cccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-------CCCCHHHHHHHHHhc------
Q 030524 78 YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK-------RQVSIEEGEAKSREL------ 144 (175)
Q Consensus 78 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~-------~~~~~~~~~~~~~~~------ 144 (175)
++...|.++.+.++.|+.- .--..++..+.... -+.++++++|.+|.... ........+++..+.
T Consensus 114 ~l~~~DLvL~l~~~~draL-~~d~~f~~dVi~~~-~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~ 191 (296)
T COG3596 114 YLPKLDLVLWLIKADDRAL-GTDEDFLRDVIILG-LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR 191 (296)
T ss_pred HhhhccEEEEeccCCCccc-cCCHHHHHHHHHhc-cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence 8999999999999988742 12233444444433 34899999999997532 111222222222211
Q ss_pred ----CCeEEEeccCCCCCHHHHHHHHHHHHh
Q 030524 145 ----NVMFIETSAKAGFNIKLCCHTLNSLIT 171 (175)
Q Consensus 145 ----~~~~~~~s~~~~~~v~~~f~~l~~~~~ 171 (175)
--|++.++.+.+.|++++...+++.+.
T Consensus 192 ~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 192 LFQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred HHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 127888999999999999998887653
No 264
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.62 E-value=5.7e-14 Score=100.88 Aligned_cols=154 Identities=19% Similarity=0.210 Sum_probs=104.0
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccc-------ccccccccc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYIR 80 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~ 80 (175)
-.-+++++|+|++|||||++.|.+-.......+..+.+...-.... ++..+++.|+||--+- ....-..++
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y--~ga~IQild~Pgii~gas~g~grG~~vlsv~R 139 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEY--KGAQIQLLDLPGIIEGASSGRGRGRQVLSVAR 139 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEee--cCceEEEEcCcccccCcccCCCCcceeeeeec
Confidence 4578999999999999999999987665433333333444333333 4477999999983211 123445678
Q ss_pred CCcEEEEEEECCChhh-HHhHHHHHHHHHHhcC---C-------------------------------------------
Q 030524 81 DSSVAVVVYDVASRQS-FLNTSKWIDEVRTERG---S------------------------------------------- 113 (175)
Q Consensus 81 ~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~---~------------------------------------------- 113 (175)
+||.+|+|+|+..... .+.+.+.++..-.... +
T Consensus 140 ~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~ 219 (365)
T COG1163 140 NADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVL 219 (365)
T ss_pred cCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEE
Confidence 9999999999986544 4445554444322111 0
Q ss_pred -------------------CCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 030524 114 -------------------DVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170 (175)
Q Consensus 114 -------------------~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~~ 170 (175)
=+|.+.+.||.|+.. .++...+.+.. ..+.+||..+.|++++.+.+...+
T Consensus 220 Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 220 IREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred EecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhh
Confidence 278899999999743 33444455444 789999999999999988876543
No 265
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.62 E-value=1.5e-14 Score=104.86 Aligned_cols=152 Identities=22% Similarity=0.311 Sum_probs=110.9
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCCC--Cc-----------------------------ccccceeeEEEEEEEEC
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD--NT-----------------------------YQATIGIDFLSKTMYLE 54 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~ 54 (175)
....++++-+|...-|||||+.||++.... ++ .....++++......+.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 345689999999999999999999875321 00 01123455555555555
Q ss_pred CeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCC-
Q 030524 55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS- 133 (175)
Q Consensus 55 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~- 133 (175)
-.+.+|.+-|||||+.|...+..-...||..|+++|+ +.+..+..+.-..+....+ -..+++..||+||.+..+..
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDA--R~Gvl~QTrRHs~I~sLLG-IrhvvvAVNKmDLvdy~e~~F 159 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDA--RKGVLEQTRRHSFIASLLG-IRHVVVAVNKMDLVDYSEEVF 159 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEec--chhhHHHhHHHHHHHHHhC-CcEEEEEEeeecccccCHHHH
Confidence 6667899999999999999999999999999999998 4445554443344444433 34577888999998765544
Q ss_pred ---HHHHHHHHHhcCC---eEEEeccCCCCCHH
Q 030524 134 ---IEEGEAKSRELNV---MFIETSAKAGFNIK 160 (175)
Q Consensus 134 ---~~~~~~~~~~~~~---~~~~~s~~~~~~v~ 160 (175)
..+...|+.++++ .++++||..|+|+-
T Consensus 160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 3445677888886 68999999999875
No 266
>PRK12740 elongation factor G; Reviewed
Probab=99.58 E-value=5e-14 Score=113.66 Aligned_cols=107 Identities=21% Similarity=0.249 Sum_probs=73.6
Q ss_pred ECCCCCCHHHHHHHHhcCCCC--------C----------cccccceeeEEEEEEEECCeEEEEEEEeCCCccccccccc
Q 030524 15 LGDQSVGKTSIITRFMYDKFD--------N----------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP 76 (175)
Q Consensus 15 ~G~~~~GKSsli~~l~~~~~~--------~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 76 (175)
+|++++|||||+++|+...-. . +..+..++......+..+ .+.+.+|||||+.++...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~--~~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWK--GHKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEEC--CEEEEEEECCCcHHHHHHHH
Confidence 699999999999999653110 0 011122222222333333 46799999999998888888
Q ss_pred ccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524 77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (175)
Q Consensus 77 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~ 127 (175)
..+..+|++++|+|.++.........| ..+.. .++|+++++||+|+.
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRA 125 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCC
Confidence 889999999999999876555443333 22222 468999999999975
No 267
>PRK00007 elongation factor G; Reviewed
Probab=99.58 E-value=4e-14 Score=114.30 Aligned_cols=116 Identities=18% Similarity=0.183 Sum_probs=78.5
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCC--------C----------CcccccceeeEEEEEEEECCeEEEEEEEeCCCc
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF--------D----------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~--------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 68 (175)
.+-.+|+++|++++|||||+++|+...- . .+.....+++.....+... ...+.++||||+
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~--~~~~~liDTPG~ 85 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--DHRINIIDTPGH 85 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC--CeEEEEEeCCCc
Confidence 3457999999999999999999974210 0 0012223333333333344 357999999999
Q ss_pred ccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 030524 69 ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (175)
Q Consensus 69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~ 128 (175)
.+|.......+..+|++++|+|+.....-+... .+..+.. .++|.++++||+|+..
T Consensus 86 ~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~-~~~~~~~---~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 86 VDFTIEVERSLRVLDGAVAVFDAVGGVEPQSET-VWRQADK---YKVPRIAFVNKMDRTG 141 (693)
T ss_pred HHHHHHHHHHHHHcCEEEEEEECCCCcchhhHH-HHHHHHH---cCCCEEEEEECCCCCC
Confidence 888777777788999999999987654333322 2222222 4688999999999864
No 268
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.58 E-value=9.9e-14 Score=104.92 Aligned_cols=82 Identities=22% Similarity=0.358 Sum_probs=53.9
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCC-cccccceeeEEEEEEE---------------------ECC-eEEEEEEEeCC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMY---------------------LED-RTVRLQLWDTA 66 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~i~D~~ 66 (175)
++|+++|.||+|||||+|+|.+..... ++.. .+.+....... .++ ....+.+||+|
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f-~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPF-TTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCC-cceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 689999999999999999999876543 3321 11111111111 111 23678999999
Q ss_pred Cc----cccccccccc---ccCCcEEEEEEECC
Q 030524 67 GQ----ERFRSLIPSY---IRDSSVAVVVYDVA 92 (175)
Q Consensus 67 G~----~~~~~~~~~~---~~~~d~~i~v~d~~ 92 (175)
|. .+...+-..+ ++++|++++|+|+.
T Consensus 81 Gl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 81 GLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred CcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 94 2233333344 78999999999996
No 269
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.57 E-value=8.9e-14 Score=102.73 Aligned_cols=117 Identities=20% Similarity=0.265 Sum_probs=87.7
Q ss_pred eEEEEEEEeCCCcccccccccccccCCcEEEEEEECCCh----------hhHHhHHHHHHHHHHhcC-CCCcEEEEEeCC
Q 030524 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR----------QSFLNTSKWIDEVRTERG-SDVIIVLVGNKT 124 (175)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~ 124 (175)
....+.+||++|+...+..|.+++.+++++|||+|+++. ..+.+....+..+..... .+.|+++++||.
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~ 238 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK 238 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence 346799999999999999999999999999999999974 456666666666665543 689999999999
Q ss_pred CCCCC----------------CCCCHHHHHHHHHh----------cCCeEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524 125 DLVEK----------------RQVSIEEGEAKSRE----------LNVMFIETSAKAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 125 D~~~~----------------~~~~~~~~~~~~~~----------~~~~~~~~s~~~~~~v~~~f~~l~~~~~~ 172 (175)
|+..+ ...+...+..+... ..+-...++|.+.+++..+|+.+.+.+..
T Consensus 239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~ 312 (317)
T cd00066 239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQ 312 (317)
T ss_pred HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHH
Confidence 96321 12233344333322 23456778999999999999998887764
No 270
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.57 E-value=1.5e-13 Score=105.27 Aligned_cols=161 Identities=17% Similarity=0.190 Sum_probs=120.6
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (175)
..+.+++.++|+.++|||.+++.++++.+...+..+....+....+...+..-.+.+.|.+-. ....+...- ..||++
T Consensus 422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~ 499 (625)
T KOG1707|consen 422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVA 499 (625)
T ss_pred cceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeE
Confidence 345689999999999999999999998887766666666666666666677667788887654 333333333 679999
Q ss_pred EEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC-eEEEeccCCCCCHHHHHH
Q 030524 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKLCCH 164 (175)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~f~ 164 (175)
.++||.+++.+|+.+...++..... ...|+++|++|+|+.+..+...-.-.+++.++++ +....|.+...+ .++|.
T Consensus 500 ~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~ 576 (625)
T KOG1707|consen 500 CLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFI 576 (625)
T ss_pred EEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHHH
Confidence 9999999999999988766655444 5899999999999976554333333889999998 556677774333 88998
Q ss_pred HHHHHHh
Q 030524 165 TLNSLIT 171 (175)
Q Consensus 165 ~l~~~~~ 171 (175)
.|...++
T Consensus 577 kL~~~A~ 583 (625)
T KOG1707|consen 577 KLATMAQ 583 (625)
T ss_pred HHHHhhh
Confidence 8876654
No 271
>PRK09866 hypothetical protein; Provisional
Probab=99.57 E-value=2.9e-13 Score=105.76 Aligned_cols=109 Identities=17% Similarity=0.215 Sum_probs=72.2
Q ss_pred EEEEEEeCCCccc-----ccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC
Q 030524 58 VRLQLWDTAGQER-----FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV 132 (175)
Q Consensus 58 ~~~~i~D~~G~~~-----~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~ 132 (175)
..+.+.||||-.. ....+...+..+|+++||+|..+..+... ....+.+. ..+...|+++|+||+|+.+....
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lk-k~~K~~PVILVVNKIDl~dreed 307 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAIL-AVGQSVPLYVLVNKFDQQDRNSD 307 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHH-hcCCCCCEEEEEEcccCCCcccc
Confidence 3578999999543 22244557899999999999986433322 12222232 22234699999999998543333
Q ss_pred CHHHHHHHHH----hcC---CeEEEeccCCCCCHHHHHHHHHH
Q 030524 133 SIEEGEAKSR----ELN---VMFIETSAKAGFNIKLCCHTLNS 168 (175)
Q Consensus 133 ~~~~~~~~~~----~~~---~~~~~~s~~~~~~v~~~f~~l~~ 168 (175)
..+....+.. ..+ ..++++||+.|.|++++.+.+.+
T Consensus 308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 3444444432 112 26999999999999999998876
No 272
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.56 E-value=1.3e-13 Score=113.93 Aligned_cols=142 Identities=21% Similarity=0.204 Sum_probs=94.0
Q ss_pred CHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeE----------------EEEEEEeCCCcccccccccccccCCcE
Q 030524 21 GKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT----------------VRLQLWDTAGQERFRSLIPSYIRDSSV 84 (175)
Q Consensus 21 GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (175)
+||||++.+.+...........+.+.....+..+... -.+.||||||++.|..+....+..+|+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi 552 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL 552 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence 4999999999877655444444444444444333110 128999999999998888878889999
Q ss_pred EEEEEECCC---hhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC-C-----------HHH-HHHH--------
Q 030524 85 AVVVYDVAS---RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-S-----------IEE-GEAK-------- 140 (175)
Q Consensus 85 ~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~-~-----------~~~-~~~~-------- 140 (175)
+++|+|+++ +.+++.+. .+.. .++|+++++||+|+...... . .+. ..++
T Consensus 553 vlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~ 625 (1049)
T PRK14845 553 AVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELI 625 (1049)
T ss_pred EEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHh
Confidence 999999986 33333332 2222 36899999999998532110 0 000 0000
Q ss_pred --HHhc---------------CCeEEEeccCCCCCHHHHHHHHHHH
Q 030524 141 --SREL---------------NVMFIETSAKAGFNIKLCCHTLNSL 169 (175)
Q Consensus 141 --~~~~---------------~~~~~~~s~~~~~~v~~~f~~l~~~ 169 (175)
..+. .++++++||++|+|+.++..+|...
T Consensus 626 ~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 626 GKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred hHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 1111 3589999999999999999887644
No 273
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.56 E-value=3.6e-14 Score=99.26 Aligned_cols=159 Identities=11% Similarity=0.084 Sum_probs=90.1
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccc--cceeeEEEEEEEECCeEEEEEEEeCCCccccc-------ccc----c
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQA--TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-------SLI----P 76 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~----~ 76 (175)
++|+|+|.+|+||||++|.+++......... +.+..........++ ..+.++||||..+.. ..+ .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 5899999999999999999999876544322 222233333335566 568999999942211 111 1
Q ss_pred ccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCC--CCcEEEEEeCCCCCCCCCCC-------HHHHHHHHHhcCCe
Q 030524 77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGS--DVIIVLVGNKTDLVEKRQVS-------IEEGEAKSRELNVM 147 (175)
Q Consensus 77 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiv~nk~D~~~~~~~~-------~~~~~~~~~~~~~~ 147 (175)
...++.|++++|+.+. +-+-. .+..++.+....++ -..++++.|..|...+.... ......+....+-.
T Consensus 79 ~~~~g~ha~llVi~~~-r~t~~-~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLG-RFTEE-DREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp HTTT-ESEEEEEEETT-B-SHH-HHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hccCCCeEEEEEEecC-cchHH-HHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence 2346789999999987 32221 23333444444442 23577778888854443311 12244556666767
Q ss_pred EEEeccC------CCCCHHHHHHHHHHHHhh
Q 030524 148 FIETSAK------AGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 148 ~~~~s~~------~~~~v~~~f~~l~~~~~~ 172 (175)
+...+.+ ....+.+++..+-+.+..
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~ 187 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQE 187 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHH
Confidence 7777666 234566777766555443
No 274
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.56 E-value=1.4e-14 Score=90.04 Aligned_cols=136 Identities=23% Similarity=0.276 Sum_probs=97.2
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCc----ccccccccccccCCcEEE
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ----ERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----~~~~~~~~~~~~~~d~~i 86 (175)
||+++|..|.|||||.+.|.+.. ..+..|..+++... -.+||||. ..+.+........+|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~--~lykKTQAve~~d~-----------~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGND--TLYKKTQAVEFNDK-----------GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcch--hhhcccceeeccCc-----------cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 79999999999999999988763 23344444332111 25799983 333333444456899999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC-eEEEeccCCCCCHHHHHHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKLCCHT 165 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~f~~ 165 (175)
+|-+++++++--.- .+... -..|+|-+++|.|+.+ ..+....+++..+-|. ++|++|+.++.|+++++++
T Consensus 70 ~v~~and~~s~f~p-----~f~~~--~~k~vIgvVTK~DLae--d~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~ 140 (148)
T COG4917 70 YVHAANDPESRFPP-----GFLDI--GVKKVIGVVTKADLAE--DADISLVKRWLREAGAEPIFETSAVDNQGVEELVDY 140 (148)
T ss_pred eeecccCccccCCc-----ccccc--cccceEEEEecccccc--hHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence 99999988642110 11111 2456888999999965 4456678888888898 8999999999999999999
Q ss_pred HHH
Q 030524 166 LNS 168 (175)
Q Consensus 166 l~~ 168 (175)
|..
T Consensus 141 L~~ 143 (148)
T COG4917 141 LAS 143 (148)
T ss_pred HHh
Confidence 864
No 275
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.55 E-value=3.6e-13 Score=97.75 Aligned_cols=122 Identities=13% Similarity=0.164 Sum_probs=73.5
Q ss_pred CCCCceeEEEECCCCCCHHHHHHHHhcCCCCC-cccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc-------ccc
Q 030524 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------LIP 76 (175)
Q Consensus 5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~ 76 (175)
++...++|+++|.+|+||||++|++++..... ....+.+.+........+ +.++.++||||..+... ..+
T Consensus 34 ~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~--G~~l~VIDTPGL~d~~~~~e~~~~~ik 111 (313)
T TIGR00991 34 EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA--GFTLNIIDTPGLIEGGYINDQAVNIIK 111 (313)
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEECCCCCchHHHHHHHHHHHH
Confidence 34568999999999999999999999876431 112222222222223334 36799999999653321 122
Q ss_pred ccc--cCCcEEEEEEECCChhhHH-hHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCC
Q 030524 77 SYI--RDSSVAVVVYDVASRQSFL-NTSKWIDEVRTERG--SDVIIVLVGNKTDLVEK 129 (175)
Q Consensus 77 ~~~--~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~--~~~~~iiv~nk~D~~~~ 129 (175)
.++ ...|+++||..++.. .+. .-...++.+...++ .-.+.+++.|+.|..++
T Consensus 112 ~~l~~~g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 112 RFLLGKTIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred HHhhcCCCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence 222 268999999765432 122 12333444444433 12468889999997543
No 276
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.55 E-value=4.3e-14 Score=100.81 Aligned_cols=96 Identities=19% Similarity=0.238 Sum_probs=78.8
Q ss_pred ccccccccccccCCcEEEEEEECCChh-hHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCe
Q 030524 69 ERFRSLIPSYIRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM 147 (175)
Q Consensus 69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~ 147 (175)
+++..+.+.++.++|++++|||+.++. ++..+.+|+..+.. .++|+++|+||+|+.+..+...+..+.+ ...+++
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence 677888899999999999999999887 89999999876543 5799999999999965444333344444 357889
Q ss_pred EEEeccCCCCCHHHHHHHHHH
Q 030524 148 FIETSAKAGFNIKLCCHTLNS 168 (175)
Q Consensus 148 ~~~~s~~~~~~v~~~f~~l~~ 168 (175)
++++||++|+|++++|..+..
T Consensus 100 v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEEEecCCchhHHHHHhhhcC
Confidence 999999999999999998764
No 277
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.55 E-value=2.3e-13 Score=97.04 Aligned_cols=121 Identities=16% Similarity=0.174 Sum_probs=73.6
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCCCCc-ccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc----------c
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT-YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS----------L 74 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~ 74 (175)
...+++|+++|.+|+|||||+|++++...... .....+..........++ ..+.+|||||..+... .
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~ 105 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSS 105 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHH
Confidence 34679999999999999999999999764322 222222233333333444 5689999999654311 1
Q ss_pred cccccc--CCcEEEEEEECCCh-hhHHhHHHHHHHHHHhcCC--CCcEEEEEeCCCCCCC
Q 030524 75 IPSYIR--DSSVAVVVYDVASR-QSFLNTSKWIDEVRTERGS--DVIIVLVGNKTDLVEK 129 (175)
Q Consensus 75 ~~~~~~--~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~--~~~~iiv~nk~D~~~~ 129 (175)
...+++ ..|++++|..++.. .... -...++.+....+. -.++++|.||+|...+
T Consensus 106 I~~~l~~~~idvIL~V~rlD~~r~~~~-d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 106 IKRYLKKKTPDVVLYVDRLDMYRRDYL-DLPLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHHhccCCCEEEEEEcCCCCCCCHH-HHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 223333 57888888766542 1222 12333444443332 2468999999997543
No 278
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=7.3e-14 Score=106.87 Aligned_cols=154 Identities=25% Similarity=0.294 Sum_probs=107.0
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCC-----------------------------CCcccccceeeEEEEEEEECCeE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF-----------------------------DNTYQATIGIDFLSKTMYLEDRT 57 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~ 57 (175)
...++++++|+..+|||||+.+++..-- +....+..+++.......++...
T Consensus 175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~ 254 (603)
T KOG0458|consen 175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS 254 (603)
T ss_pred ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence 4579999999999999999999875210 11122234555566666667777
Q ss_pred EEEEEEeCCCcccccccccccccCCcEEEEEEECCChh---hHHhHH--HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC
Q 030524 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ---SFLNTS--KWIDEVRTERGSDVIIVLVGNKTDLVEKRQV 132 (175)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~~~~--~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~ 132 (175)
..+++.|+|||..|...+-.-..++|+.|+|+|++..+ +|+... +....+.+..+ -..+++++||+|++...+.
T Consensus 255 ~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg-i~qlivaiNKmD~V~Wsq~ 333 (603)
T KOG0458|consen 255 KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG-ISQLIVAINKMDLVSWSQD 333 (603)
T ss_pred eeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC-cceEEEEeecccccCccHH
Confidence 78999999999999998888899999999999997431 333211 22222333332 3456777899999876665
Q ss_pred CHHHHH----HHH-HhcC-----CeEEEeccCCCCCHHH
Q 030524 133 SIEEGE----AKS-RELN-----VMFIETSAKAGFNIKL 161 (175)
Q Consensus 133 ~~~~~~----~~~-~~~~-----~~~~~~s~~~~~~v~~ 161 (175)
..+++. .|. +..| +.|++||+..|+|+-.
T Consensus 334 RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 334 RFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK 372 (603)
T ss_pred HHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence 555543 333 2333 4799999999999764
No 279
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.54 E-value=3.4e-13 Score=93.29 Aligned_cols=104 Identities=16% Similarity=0.125 Sum_probs=66.4
Q ss_pred EEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHH
Q 030524 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEG 137 (175)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~ 137 (175)
....++++.|..-..... .. -+|.+|.|+|+.+.+.... .....+ ...-++++||+|+.+.........
T Consensus 92 ~D~iiIEt~G~~l~~~~~-~~--l~~~~i~vvD~~~~~~~~~--~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~~ 160 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFS-PE--LADLTIFVIDVAAGDKIPR--KGGPGI------TRSDLLVINKIDLAPMVGADLGVM 160 (199)
T ss_pred CCEEEEECCCCCcccccc-hh--hhCcEEEEEEcchhhhhhh--hhHhHh------hhccEEEEEhhhccccccccHHHH
Confidence 456788888842111121 11 2578999999987655322 111112 122278889999875333344444
Q ss_pred HHHHHh--cCCeEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524 138 EAKSRE--LNVMFIETSAKAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 138 ~~~~~~--~~~~~~~~s~~~~~~v~~~f~~l~~~~~~ 172 (175)
.+.++. .+.+++++|+++|+|++++|+++.+++.-
T Consensus 161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~~ 197 (199)
T TIGR00101 161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYALL 197 (199)
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 555554 34699999999999999999999887643
No 280
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.54 E-value=1.6e-13 Score=87.85 Aligned_cols=114 Identities=36% Similarity=0.405 Sum_probs=81.9
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCccc-ccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQ-ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (175)
+||+++|..|+|||+|+.++....+...+. ++.+ +......+.+.++.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 489999999999999999997766553332 3322 223334467788999999
Q ss_pred EECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHH
Q 030524 89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160 (175)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~ 160 (175)
|+..++.+++.+ |...+....+.+.|.++++||.|+.++.+....+.. .++++|+++|.++.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~--------~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGL--------EFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHH--------HHHHHhCCCcchhh
Confidence 999999998766 777666655567899999999998543333333332 44567888888875
No 281
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.54 E-value=3.8e-14 Score=114.81 Aligned_cols=116 Identities=21% Similarity=0.174 Sum_probs=79.0
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCC---------------CCCc---ccccceeeEEEEEEEECCeEEEEEEEeCCCcc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDK---------------FDNT---YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~---------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 69 (175)
.-.+|+++|+.++|||||+++|+... +... +..+............++..+.+.+|||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 34799999999999999999997531 1110 11122222222233456667889999999999
Q ss_pred cccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524 70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (175)
Q Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~ 127 (175)
+|.......+..+|++++|+|+.+....+....| .... ..+.|.++++||+|..
T Consensus 98 ~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~---~~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 98 DFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQAL---KENVKPVLFINKVDRL 151 (720)
T ss_pred ccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHH---HcCCCEEEEEEChhcc
Confidence 9888888889999999999998864322221212 2221 2457888999999975
No 282
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=1e-13 Score=93.99 Aligned_cols=155 Identities=23% Similarity=0.335 Sum_probs=103.7
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccccccccccccc---CCcEE
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR---DSSVA 85 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---~~d~~ 85 (175)
.-.|+++|+.+||||+|.-+|..+.......+... .......++. .+++.|.|||++.+.-...+++ ++-++
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiep---n~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akai 112 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEP---NEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAI 112 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCccCeeeeecc---ceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeE
Confidence 35799999999999999999988754444333222 1222222222 3899999999998888877887 78999
Q ss_pred EEEEECCC-hhhHHhHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCCCC--C----HH--------------------
Q 030524 86 VVVYDVAS-RQSFLNTSKWIDEVRTER---GSDVIIVLVGNKTDLVEKRQV--S----IE-------------------- 135 (175)
Q Consensus 86 i~v~d~~~-~~~~~~~~~~~~~~~~~~---~~~~~~iiv~nk~D~~~~~~~--~----~~-------------------- 135 (175)
+||+|... ..-...+..++-.+.... .+.+|++++-||.|+.-++.. . +.
T Consensus 113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~ 192 (238)
T KOG0090|consen 113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDI 192 (238)
T ss_pred EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence 99998762 234455666555555554 478889999999998532100 0 00
Q ss_pred --------HHH--HHHH--hcCCeEEEeccCCCCCHHHHHHHHHHH
Q 030524 136 --------EGE--AKSR--ELNVMFIETSAKAGFNIKLCCHTLNSL 169 (175)
Q Consensus 136 --------~~~--~~~~--~~~~~~~~~s~~~~~~v~~~f~~l~~~ 169 (175)
..+ +|.+ ...+.|.++|++.+ +++++-+|+.+.
T Consensus 193 ~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 193 AKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred cccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 001 1111 12457899999988 799999998775
No 283
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.52 E-value=3.2e-13 Score=100.56 Aligned_cols=116 Identities=16% Similarity=0.212 Sum_probs=85.4
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEECCCh----------hhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCC
Q 030524 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR----------QSFLNTSKWIDEVRTERG-SDVIIVLVGNKTD 125 (175)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D 125 (175)
...+.+||.+|+...+..|.+++.+++++|||+|+++. ..+.+....+..+..... .+.|+++++||.|
T Consensus 183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D 262 (342)
T smart00275 183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID 262 (342)
T ss_pred CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence 35689999999999999999999999999999999963 456666666666665433 6899999999999
Q ss_pred CCCC---------------CCCCHHHHHHHHHh-----------cCCeEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524 126 LVEK---------------RQVSIEEGEAKSRE-----------LNVMFIETSAKAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 126 ~~~~---------------~~~~~~~~~~~~~~-----------~~~~~~~~s~~~~~~v~~~f~~l~~~~~~ 172 (175)
+..+ ...+...+..+... ..+-.+.++|.+..++..+|+.+...+..
T Consensus 263 ~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~ 335 (342)
T smart00275 263 LFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQ 335 (342)
T ss_pred hHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHH
Confidence 7421 11123333333221 12455778899999999999988777654
No 284
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.52 E-value=1.9e-13 Score=102.41 Aligned_cols=159 Identities=16% Similarity=0.210 Sum_probs=114.4
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCC--------------CCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccc
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKF--------------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI 75 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 75 (175)
.+|+++.+...|||||++.|+.+.- ..+.....++++..+...+.-+.+.+.+.|||||.+|....
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV 85 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV 85 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence 5899999999999999999998632 11223346777888877777777899999999999999999
Q ss_pred cccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCC-HHHHHHHHH-------hcCCe
Q 030524 76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS-IEEGEAKSR-------ELNVM 147 (175)
Q Consensus 76 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~-~~~~~~~~~-------~~~~~ 147 (175)
+..++=.|++++++|+.+..- ...+-- +.+....+.+.|+|+||.|....+... .++...+.. +++.|
T Consensus 86 ERvl~MVDgvlLlVDA~EGpM-PQTrFV---lkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFP 161 (603)
T COG1217 86 ERVLSMVDGVLLLVDASEGPM-PQTRFV---LKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFP 161 (603)
T ss_pred hhhhhhcceEEEEEEcccCCC-Cchhhh---HHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCc
Confidence 999999999999999986522 122222 222223467778889999976543321 222223322 34568
Q ss_pred EEEeccCCCC----------CHHHHHHHHHHHHhh
Q 030524 148 FIETSAKAGF----------NIKLCCHTLNSLITV 172 (175)
Q Consensus 148 ~~~~s~~~~~----------~v~~~f~~l~~~~~~ 172 (175)
++..|+++|. ++..+|+.|++.+.+
T Consensus 162 ivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~ 196 (603)
T COG1217 162 IVYASARNGTASLDPEDEADDMAPLFETILDHVPA 196 (603)
T ss_pred EEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence 9999998864 688999998887644
No 285
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.50 E-value=1.6e-13 Score=103.50 Aligned_cols=164 Identities=17% Similarity=0.106 Sum_probs=107.6
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccc------ccccc---c
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER------FRSLI---P 76 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------~~~~~---~ 76 (175)
+++..+++++|-|++||||+++.+..........+..+...+.-. .+..-..++++||||--+ ..-.+ .
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH--~dykYlrwQViDTPGILD~plEdrN~IEmqsIT 242 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGH--LDYKYLRWQVIDTPGILDRPEEDRNIIEMQIIT 242 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhh--hhhheeeeeecCCccccCcchhhhhHHHHHHHH
Confidence 567789999999999999999988876655332222222222222 123345789999999211 11111 1
Q ss_pred ccccCCcEEEEEEECCCh--hhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHH---HHHHHHhcCCeEEEe
Q 030524 77 SYIRDSSVAVVVYDVASR--QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEE---GEAKSRELNVMFIET 151 (175)
Q Consensus 77 ~~~~~~d~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~---~~~~~~~~~~~~~~~ 151 (175)
....---+++|+.|++.. .|.++...++..+.-.+ .+.|+|+++||+|+......+... .......-++++++.
T Consensus 243 ALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLF-aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~t 321 (620)
T KOG1490|consen 243 ALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF-ANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQT 321 (620)
T ss_pred HHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHh-cCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEe
Confidence 111223578999999854 56666666666665554 589999999999987665555433 333344445899999
Q ss_pred ccCCCCCHHHHHHHHHHHHhh
Q 030524 152 SAKAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 152 s~~~~~~v~~~f~~l~~~~~~ 172 (175)
|+.+-+|+.++-...++.+..
T Consensus 322 S~~~eegVm~Vrt~ACe~LLa 342 (620)
T KOG1490|consen 322 SCVQEEGVMDVRTTACEALLA 342 (620)
T ss_pred cccchhceeeHHHHHHHHHHH
Confidence 999999999887776665543
No 286
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.47 E-value=1.6e-12 Score=93.63 Aligned_cols=159 Identities=19% Similarity=0.274 Sum_probs=112.9
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEE--CCeEEEEEEEeCCCcccccccccccccCC----
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL--EDRTVRLQLWDTAGQERFRSLIPSYIRDS---- 82 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~---- 82 (175)
.-+|+++|..++|||||+.+|-+.. +..+..+..|....+.- +.+..+..+|-.-|.--+..+....+...
T Consensus 52 gk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ae 128 (473)
T KOG3905|consen 52 GKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAE 128 (473)
T ss_pred CCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccc
Confidence 4689999999999999999987754 44555555555444422 22334677887777655555554444322
Q ss_pred cEEEEEEECCChhhH-HhHHHHHHHHHHhcCC------------------------------------------------
Q 030524 83 SVAVVVYDVASRQSF-LNTSKWIDEVRTERGS------------------------------------------------ 113 (175)
Q Consensus 83 d~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~------------------------------------------------ 113 (175)
..+|++.|+++|+.. +.+++|..-+..+...
T Consensus 129 tlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ 208 (473)
T KOG3905|consen 129 TLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHV 208 (473)
T ss_pred eEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccc
Confidence 578899999999654 4478887766554221
Q ss_pred -------------CCcEEEEEeCCCCC----CCCCC-------CHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHH
Q 030524 114 -------------DVIIVLVGNKTDLV----EKRQV-------SIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSL 169 (175)
Q Consensus 114 -------------~~~~iiv~nk~D~~----~~~~~-------~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~ 169 (175)
++|+++|.||+|.. .+.+. .....+.||-++|..++.+|++...|++-++.+|...
T Consensus 209 llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr 288 (473)
T KOG3905|consen 209 LLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHR 288 (473)
T ss_pred ccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHH
Confidence 58999999999973 22211 1234577888899999999999999999999999876
Q ss_pred H
Q 030524 170 I 170 (175)
Q Consensus 170 ~ 170 (175)
.
T Consensus 289 ~ 289 (473)
T KOG3905|consen 289 S 289 (473)
T ss_pred h
Confidence 4
No 287
>PRK13768 GTPase; Provisional
Probab=99.47 E-value=1.9e-13 Score=97.93 Aligned_cols=111 Identities=21% Similarity=0.165 Sum_probs=70.0
Q ss_pred EEEEEeCCCccccc---ccccccc---cC--CcEEEEEEECCChhhHHh-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 030524 59 RLQLWDTAGQERFR---SLIPSYI---RD--SSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129 (175)
Q Consensus 59 ~~~i~D~~G~~~~~---~~~~~~~---~~--~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~ 129 (175)
.+.+||+||+.+.. ..+..++ .. .+++++++|+........ ...++.........+.|+++++||+|+...
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 68999999976533 2332222 22 899999999965432222 122222222212247999999999998644
Q ss_pred CCCCHHHHHH----------------------------HHHhcC--CeEEEeccCCCCCHHHHHHHHHHHHh
Q 030524 130 RQVSIEEGEA----------------------------KSRELN--VMFIETSAKAGFNIKLCCHTLNSLIT 171 (175)
Q Consensus 130 ~~~~~~~~~~----------------------------~~~~~~--~~~~~~s~~~~~~v~~~f~~l~~~~~ 171 (175)
.+. ..... ..++.+ .+++++|+++++|++++.++|.+.+.
T Consensus 178 ~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 178 EEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred hhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 322 11111 122334 58899999999999999999988764
No 288
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.46 E-value=3.6e-12 Score=97.91 Aligned_cols=161 Identities=20% Similarity=0.326 Sum_probs=113.0
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEEC--CeEEEEEEEeCCCcccccccccccccC----
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE--DRTVRLQLWDTAGQERFRSLIPSYIRD---- 81 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~---- 81 (175)
..-.|+|+|..++|||||+.+|.+.. +..++.+.+|....+.-+ ....++.+|...|...+..+.+..+..
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~ 100 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP 100 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence 45789999999999999999986543 345566666665554332 233568999998866666666544432
Q ss_pred CcEEEEEEECCChhhHHh-HHHHHHHHHHhcC------------------------------------------------
Q 030524 82 SSVAVVVYDVASRQSFLN-TSKWIDEVRTERG------------------------------------------------ 112 (175)
Q Consensus 82 ~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~------------------------------------------------ 112 (175)
--.+|+|.|++.|+.+-+ +..|+..+..+..
T Consensus 101 ~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~ 180 (472)
T PF05783_consen 101 NTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDE 180 (472)
T ss_pred ceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccc
Confidence 257888999999875553 5666554433210
Q ss_pred --------------CCCcEEEEEeCCCCCC----CC---C----CCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524 113 --------------SDVIIVLVGNKTDLVE----KR---Q----VSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLN 167 (175)
Q Consensus 113 --------------~~~~~iiv~nk~D~~~----~~---~----~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~ 167 (175)
-++|++||.+|+|... +. + ...+..+.+|-.+|+.++.+|++...+++.++.+|.
T Consensus 181 ~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~ 260 (472)
T PF05783_consen 181 SVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYIL 260 (472)
T ss_pred cccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHH
Confidence 0489999999999642 11 1 123346777888999999999999999999999987
Q ss_pred HHHh
Q 030524 168 SLIT 171 (175)
Q Consensus 168 ~~~~ 171 (175)
..+.
T Consensus 261 h~l~ 264 (472)
T PF05783_consen 261 HRLY 264 (472)
T ss_pred HHhc
Confidence 7653
No 289
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.46 E-value=1.2e-12 Score=91.42 Aligned_cols=150 Identities=20% Similarity=0.243 Sum_probs=86.4
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCC------------cccc----cceeeEEEEEEE------------------
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDN------------TYQA----TIGIDFLSKTMY------------------ 52 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~------------~~~~----~~~~~~~~~~~~------------------ 52 (175)
.....|.++|++|+|||||+++++...... ..+. ..+.. .....
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~--~~~l~~gcic~~~~~~~~~~l~~ 97 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAP--AIQINTGKECHLDAHMVAHALED 97 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCc--EEEEcCCCcccCChHHHHHHHHH
Confidence 346789999999999999999987641100 0000 00000 00000
Q ss_pred ECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC
Q 030524 53 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV 132 (175)
Q Consensus 53 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~ 132 (175)
.......+.+.|+.|.-... ..+....+..+.|+|+.+.+... ... ... ...|.++++||+|+.+....
T Consensus 98 ~~~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~--~~~-~~~-----~~~a~iiv~NK~Dl~~~~~~ 166 (207)
T TIGR00073 98 LPLDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKP--LKY-PGM-----FKEADLIVINKADLAEAVGF 166 (207)
T ss_pred hccCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchh--hhh-HhH-----HhhCCEEEEEHHHccccchh
Confidence 00012356778887721100 11112345556788877553211 111 111 23567899999998654333
Q ss_pred CHHHHHHHHHhcC--CeEEEeccCCCCCHHHHHHHHHHH
Q 030524 133 SIEEGEAKSRELN--VMFIETSAKAGFNIKLCCHTLNSL 169 (175)
Q Consensus 133 ~~~~~~~~~~~~~--~~~~~~s~~~~~~v~~~f~~l~~~ 169 (175)
...+.....++.+ ++++++|+++|.|++++|+++.+.
T Consensus 167 ~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 167 DVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3344444444444 799999999999999999999875
No 290
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.45 E-value=9.6e-13 Score=95.43 Aligned_cols=140 Identities=14% Similarity=0.155 Sum_probs=76.9
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCCcc----------cccceeeEEEEEEEECCeEEEEEEEeCCCcccccc---cc
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTY----------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---LI 75 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~ 75 (175)
.++|+++|.+|+|||||+|.|++....... ..+..+......+.-++..+.+.++||||...... .|
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 589999999999999999999986543221 12233444444555677888999999999432111 00
Q ss_pred c---cc---------------------ccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 030524 76 P---SY---------------------IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ 131 (175)
Q Consensus 76 ~---~~---------------------~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~ 131 (175)
. .| =...|+++|+++.+.. ++..+. .+.++.....+++|.|+.|+|.....+
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~D---i~~mk~Ls~~vNvIPvIaKaD~lt~~e 159 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLD---IEFMKRLSKRVNVIPVIAKADTLTPEE 159 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHH---HHHHHHHTTTSEEEEEESTGGGS-HHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHH---HHHHHHhcccccEEeEEecccccCHHH
Confidence 0 00 0257999999997643 122211 122333335688999999999643221
Q ss_pred --CCHHHHHHHHHhcCCeEEEec
Q 030524 132 --VSIEEGEAKSRELNVMFIETS 152 (175)
Q Consensus 132 --~~~~~~~~~~~~~~~~~~~~s 152 (175)
.........+..++++++...
T Consensus 160 l~~~k~~i~~~l~~~~I~~f~f~ 182 (281)
T PF00735_consen 160 LQAFKQRIREDLEENNIKIFDFP 182 (281)
T ss_dssp HHHHHHHHHHHHHHTT--S----
T ss_pred HHHHHHHHHHHHHHcCceeeccc
Confidence 123334445566777665543
No 291
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.44 E-value=7.1e-13 Score=109.05 Aligned_cols=116 Identities=18% Similarity=0.214 Sum_probs=78.7
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCC----------------CcccccceeeEEEEEEEE--------------CCeE
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD----------------NTYQATIGIDFLSKTMYL--------------EDRT 57 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~--------------~~~~ 57 (175)
+-.+|+++|+.++|||||+++|+...-. .+.....++......... ++..
T Consensus 18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
T PLN00116 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNE 97 (843)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCc
Confidence 4579999999999999999999864310 011111112211111211 2235
Q ss_pred EEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (175)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~ 127 (175)
+.+.++|||||.+|.......+..+|++|+|+|+..+-..+....| .... ..++|.++++||+|..
T Consensus 98 ~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~-~~~~---~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (843)
T ss_pred eEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHH-HHHH---HCCCCEEEEEECCccc
Confidence 6789999999999999888888999999999999866433322222 2222 2478999999999975
No 292
>PTZ00416 elongation factor 2; Provisional
Probab=99.43 E-value=9.2e-13 Score=108.23 Aligned_cols=116 Identities=18% Similarity=0.236 Sum_probs=77.5
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCC--C--------------CcccccceeeEEEEEEEEC--------CeEEEEEEE
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKF--D--------------NTYQATIGIDFLSKTMYLE--------DRTVRLQLW 63 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~--~--------------~~~~~~~~~~~~~~~~~~~--------~~~~~~~i~ 63 (175)
.-.+|+++|+.++|||||+++|+...- . .+.....++.........+ +....+.++
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 346999999999999999999986321 0 0011111111111122222 225679999
Q ss_pred eCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524 64 DTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (175)
Q Consensus 64 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~ 127 (175)
||||+.+|.......+..+|++|+|+|+.++-..+. ...+..+.. .++|+++++||+|+.
T Consensus 98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~---~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQ---ERIRPVLFINKVDRA 157 (836)
T ss_pred cCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHH---cCCCEEEEEEChhhh
Confidence 999999998888888899999999999987533322 222233322 468999999999975
No 293
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.41 E-value=3.4e-12 Score=94.23 Aligned_cols=104 Identities=14% Similarity=0.070 Sum_probs=65.7
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC--CH
Q 030524 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SI 134 (175)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~--~~ 134 (175)
++.+.|+||+|-..-.. .....+|.++++.+...++.++.... .+.. ..-++|+||+|+...... ..
T Consensus 148 g~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E-----~aDIiVVNKaDl~~~~~a~~~~ 216 (332)
T PRK09435 148 GYDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGIKK---GIME-----LADLIVINKADGDNKTAARRAA 216 (332)
T ss_pred CCCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHHHh---hhhh-----hhheEEeehhcccchhHHHHHH
Confidence 46789999999652221 24667999999976444544444332 2222 222788899998643211 11
Q ss_pred HHHHHHHHh-------cCCeEEEeccCCCCCHHHHHHHHHHHHh
Q 030524 135 EEGEAKSRE-------LNVMFIETSAKAGFNIKLCCHTLNSLIT 171 (175)
Q Consensus 135 ~~~~~~~~~-------~~~~~~~~s~~~~~~v~~~f~~l~~~~~ 171 (175)
.+.+..... +..+++.+|+.++.|++++++.+.+...
T Consensus 217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 222222221 2258999999999999999999887654
No 294
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.41 E-value=1e-11 Score=83.63 Aligned_cols=150 Identities=22% Similarity=0.150 Sum_probs=90.9
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEE---------------EEEE--------------------C
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSK---------------TMYL--------------------E 54 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~---------------~~~~--------------------~ 54 (175)
++|.+.|++|||||+|+.+++..-...-.....+.+.+.. .+.. .
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~~ 93 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVLD 93 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhhc
Confidence 7999999999999999999775321111111111111110 0000 0
Q ss_pred CeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCH
Q 030524 55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI 134 (175)
Q Consensus 55 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~ 134 (175)
.....+.|++.+|+ ....-.+.-..+.-|+|+|.+..+-. -++-...+ -..-++|+||.|+.+....+.
T Consensus 94 ~~~~Dll~iEs~GN---L~~~~sp~L~d~~~v~VidvteGe~~--P~K~gP~i------~~aDllVInK~DLa~~v~~dl 162 (202)
T COG0378 94 FPDLDLLFIESVGN---LVCPFSPDLGDHLRVVVIDVTEGEDI--PRKGGPGI------FKADLLVINKTDLAPYVGADL 162 (202)
T ss_pred CCcCCEEEEecCcc---eecccCcchhhceEEEEEECCCCCCC--cccCCCce------eEeeEEEEehHHhHHHhCccH
Confidence 01135666666661 11111122233477888888765311 01000001 113478889999988888887
Q ss_pred HHHHHHHHhcC--CeEEEeccCCCCCHHHHHHHHHHHH
Q 030524 135 EEGEAKSRELN--VMFIETSAKAGFNIKLCCHTLNSLI 170 (175)
Q Consensus 135 ~~~~~~~~~~~--~~~~~~s~~~~~~v~~~f~~l~~~~ 170 (175)
+...+-+++.+ .+++++|.++|+|+++++.++....
T Consensus 163 evm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 163 EVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 88888887765 6999999999999999999987654
No 295
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.41 E-value=5.3e-14 Score=99.72 Aligned_cols=112 Identities=21% Similarity=0.111 Sum_probs=60.2
Q ss_pred EEEEEeCCCcccccccccccc--------cCCcEEEEEEECCChhh-HHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 030524 59 RLQLWDTAGQERFRSLIPSYI--------RDSSVAVVVYDVASRQS-FLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129 (175)
Q Consensus 59 ~~~i~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~ 129 (175)
.+.++|||||.++...+...- ...-++++++|.....+ ...+..++..+.....-+.|.+.++||+|+..+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 689999999987666544332 34557888898763322 222334444444333357999999999998652
Q ss_pred C----------------------CCCHHHHHHHHHhcC-C-eEEEeccCCCCCHHHHHHHHHHHH
Q 030524 130 R----------------------QVSIEEGEAKSRELN-V-MFIETSAKAGFNIKLCCHTLNSLI 170 (175)
Q Consensus 130 ~----------------------~~~~~~~~~~~~~~~-~-~~~~~s~~~~~~v~~~f~~l~~~~ 170 (175)
. .............++ . +++.+|+.+++++.+++..+-+.+
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 1 000001111111223 3 799999999999999999876654
No 296
>PTZ00258 GTP-binding protein; Provisional
Probab=99.40 E-value=6.9e-12 Score=94.24 Aligned_cols=86 Identities=19% Similarity=0.133 Sum_probs=56.4
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCe---------------EEEEEEEeCCCcccc
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQERF 71 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~ 71 (175)
...++|+++|.||+|||||+|+|.+........+..+.+.....+.+... ..++.++|+||-..-
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 34689999999999999999999887654333344433433333333322 235899999994321
Q ss_pred c----c---cccccccCCcEEEEEEECC
Q 030524 72 R----S---LIPSYIRDSSVAVVVYDVA 92 (175)
Q Consensus 72 ~----~---~~~~~~~~~d~~i~v~d~~ 92 (175)
. . ..-..++++|++++|+|..
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1 1 1122367899999999973
No 297
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.39 E-value=9.7e-12 Score=87.78 Aligned_cols=139 Identities=12% Similarity=0.119 Sum_probs=80.4
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (175)
...+..|+++|++|+|||||++.+++...........+ + ..+.. .....+.++||||+- ... ....+.+|++
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~---i~i~~-~~~~~i~~vDtPg~~--~~~-l~~ak~aDvV 107 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG-P---ITVVT-GKKRRLTFIECPNDI--NAM-IDIAKVADLV 107 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccc-c---EEEEe-cCCceEEEEeCCchH--HHH-HHHHHhcCEE
Confidence 34567899999999999999999987532211111111 1 11111 234568999999853 222 2336789999
Q ss_pred EEEEECCChhhHHhHHHHHHHHHHhcCCCCcE-EEEEeCCCCCCCCCCC---HHHHHH-HHHh--cCCeEEEeccCCC
Q 030524 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVII-VLVGNKTDLVEKRQVS---IEEGEA-KSRE--LNVMFIETSAKAG 156 (175)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiv~nk~D~~~~~~~~---~~~~~~-~~~~--~~~~~~~~s~~~~ 156 (175)
++++|++....... ...+..+. . .+.|. ++++||.|+.+..... ....+. +..+ .+.+++.+||+++
T Consensus 108 llviDa~~~~~~~~-~~i~~~l~-~--~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~ 181 (225)
T cd01882 108 LLLIDASFGFEMET-FEFLNILQ-V--HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVH 181 (225)
T ss_pred EEEEecCcCCCHHH-HHHHHHHH-H--cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccC
Confidence 99999875433222 22222222 2 34674 4589999986432211 111111 2222 2358999998875
No 298
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=3.3e-12 Score=91.85 Aligned_cols=164 Identities=18% Similarity=0.157 Sum_probs=107.0
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCC---CCCcccccceeeE------------------EEEEEEEC------CeEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDK---FDNTYQATIGIDF------------------LSKTMYLE------DRTVR 59 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~------------------~~~~~~~~------~~~~~ 59 (175)
...++|.++|+...|||||...|.+-- ..++.....++.. +...-.+. .-...
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 457999999999999999999987631 1111111111110 00111111 12357
Q ss_pred EEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC--CHHHH
Q 030524 60 LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEG 137 (175)
Q Consensus 60 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~--~~~~~ 137 (175)
+.|.|+|||+.....+-.-..-.|+.++|++++.+-.-...++++..+... .-..++++-||.|+....+. +.++.
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi--gik~iiIvQNKIDlV~~E~AlE~y~qI 165 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII--GIKNIIIVQNKIDLVSRERALENYEQI 165 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh--ccceEEEEecccceecHHHHHHHHHHH
Confidence 899999999876655554455579999999998664433455555555443 23557888899999754322 33445
Q ss_pred HHHHHh---cCCeEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524 138 EAKSRE---LNVMFIETSAKAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 138 ~~~~~~---~~~~~~~~s~~~~~~v~~~f~~l~~~~~~ 172 (175)
++|.+. .+.|++++||..+.|++-+++.|.+.|-.
T Consensus 166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence 555543 25799999999999999999999887753
No 299
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.38 E-value=5.5e-12 Score=93.91 Aligned_cols=156 Identities=15% Similarity=0.129 Sum_probs=75.1
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCccccccee---eEEEEEEEECCeEEEEEEEeCCCccccccccccc-----c
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGI---DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY-----I 79 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~-----~ 79 (175)
.+++|+|+|.+|+|||||+|.|.+-...++.....++ +............ .+.+||.||-+.-......| +
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~p-nv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFP-NVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-T-TEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCC-CCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 4689999999999999999999874333222222111 1112222222211 48999999965433333333 4
Q ss_pred cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC-------CCCCCCHHH----HHHHHH----hc
Q 030524 80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV-------EKRQVSIEE----GEAKSR----EL 144 (175)
Q Consensus 80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~-------~~~~~~~~~----~~~~~~----~~ 144 (175)
.+.|.+|++.+ +.|.....++-.-... .++|+++|-||+|.. .++....++ .++-+. +.
T Consensus 113 ~~yD~fiii~s----~rf~~ndv~La~~i~~--~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~ 186 (376)
T PF05049_consen 113 YRYDFFIIISS----ERFTENDVQLAKEIQR--MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA 186 (376)
T ss_dssp GG-SEEEEEES----SS--HHHHHHHHHHHH--TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT
T ss_pred cccCEEEEEeC----CCCchhhHHHHHHHHH--cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence 57798888776 3354443333322222 478999999999951 112222222 222222 22
Q ss_pred CC---eEEEeccCCCC--CHHHHHHHHHHHH
Q 030524 145 NV---MFIETSAKAGF--NIKLCCHTLNSLI 170 (175)
Q Consensus 145 ~~---~~~~~s~~~~~--~v~~~f~~l~~~~ 170 (175)
++ ++|-+|+++-. +...+-+.|.+.+
T Consensus 187 gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dL 217 (376)
T PF05049_consen 187 GVSEPQVFLVSSFDLSKYDFPKLEETLEKDL 217 (376)
T ss_dssp T-SS--EEEB-TTTTTSTTHHHHHHHHHHHS
T ss_pred CCCcCceEEEeCCCcccCChHHHHHHHHHHh
Confidence 43 78999988743 4555555555443
No 300
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=6.5e-12 Score=98.78 Aligned_cols=164 Identities=19% Similarity=0.182 Sum_probs=104.9
Q ss_pred CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccce----eeEEEEEE--------EECC----eEEEEEEEeCCCc
Q 030524 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIG----IDFLSKTM--------YLED----RTVRLQLWDTAGQ 68 (175)
Q Consensus 5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~----~~~~~~~~--------~~~~----~~~~~~i~D~~G~ 68 (175)
.+.++.-|+++|+..+|||-|++.+.+..+........+ -+++...- .-++ ..=-+.++|||||
T Consensus 471 ~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpgh 550 (1064)
T KOG1144|consen 471 ENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGH 550 (1064)
T ss_pred hhcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCc
Confidence 345678899999999999999999988655433333222 22222210 0001 1113789999999
Q ss_pred ccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC-CC------------CCCCHH
Q 030524 69 ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV-EK------------RQVSIE 135 (175)
Q Consensus 69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~-~~------------~~~~~~ 135 (175)
+.|..+.......||.+|+|+|+-.+- +. ..++.+.....++.|+|+++||+|.. .. .....+
T Consensus 551 EsFtnlRsrgsslC~~aIlvvdImhGl--ep--qtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~ 626 (1064)
T KOG1144|consen 551 ESFTNLRSRGSSLCDLAILVVDIMHGL--EP--QTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKD 626 (1064)
T ss_pred hhhhhhhhccccccceEEEEeehhccC--Cc--chhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHH
Confidence 999999999999999999999998541 11 11112222223689999999999952 10 000111
Q ss_pred HHHHH-----------HHh-c-------------CCeEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524 136 EGEAK-----------SRE-L-------------NVMFIETSAKAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 136 ~~~~~-----------~~~-~-------------~~~~~~~s~~~~~~v~~~f~~l~~~~~~ 172 (175)
....| +.. + .+.++++||.+|+|+-+|..+|++....
T Consensus 627 v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk 688 (1064)
T KOG1144|consen 627 VQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQK 688 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHH
Confidence 11111 110 0 1368999999999999999998876543
No 301
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.36 E-value=3.3e-11 Score=90.14 Aligned_cols=155 Identities=16% Similarity=0.207 Sum_probs=94.3
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCccc--------------ccce-------eeE---EEEEEEE-CCeEEEEEE
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQ--------------ATIG-------IDF---LSKTMYL-EDRTVRLQL 62 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~--------------~~~~-------~~~---~~~~~~~-~~~~~~~~i 62 (175)
-.+-|+++|+.++|||||+++|.+.-+-++.. +..+ .-+ ...++.. ++....+.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 35889999999999999999999872211111 1111 111 2333333 345568999
Q ss_pred EeCCCcccccc-------c----------------------cccccc-CCcEEEEEE-ECC----ChhhH-HhHHHHHHH
Q 030524 63 WDTAGQERFRS-------L----------------------IPSYIR-DSSVAVVVY-DVA----SRQSF-LNTSKWIDE 106 (175)
Q Consensus 63 ~D~~G~~~~~~-------~----------------------~~~~~~-~~d~~i~v~-d~~----~~~~~-~~~~~~~~~ 106 (175)
+||+|...-.. . ++..+. ++|+.|+|. |.+ .++.+ +.-.+++.+
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 99999321110 0 223344 889999988 654 12223 234556566
Q ss_pred HHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCC--CCCHHHHHHHHH
Q 030524 107 VRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA--GFNIKLCCHTLN 167 (175)
Q Consensus 107 ~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~v~~~f~~l~ 167 (175)
+.. .++|+++++|+.|-.. .........+...++++++.+|+.+ -+.+..++..++
T Consensus 176 Lk~---~~kPfiivlN~~dp~~--~et~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL 233 (492)
T TIGR02836 176 LKE---LNKPFIILLNSTHPYH--PETEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVL 233 (492)
T ss_pred HHh---cCCCEEEEEECcCCCC--chhHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHH
Confidence 554 5899999999999321 1234445566677888877777654 445666665544
No 302
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.36 E-value=2.4e-12 Score=104.70 Aligned_cols=116 Identities=20% Similarity=0.179 Sum_probs=76.4
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCC--C---------cccc-----cceeeEEEE--EEEECCeEEEEEEEeCCCcc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD--N---------TYQA-----TIGIDFLSK--TMYLEDRTVRLQLWDTAGQE 69 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~--~---------~~~~-----~~~~~~~~~--~~~~~~~~~~~~i~D~~G~~ 69 (175)
+-.+|+++|+.++|||||+++|+...-. . ++.+ ..++..... .+..++....+.++||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 3468999999999999999999863211 0 0000 111111111 12234456789999999999
Q ss_pred cccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524 70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (175)
Q Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~ 127 (175)
+|.......+..+|++|+|+|+..+...+ ....+..... .+.|.++++||+|..
T Consensus 99 df~~~~~~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~~---~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQ-TETVLRQALR---ERVKPVLFINKVDRL 152 (731)
T ss_pred ChHHHHHHHHHhcCEEEEEEECCCCCCcc-HHHHHHHHHH---cCCCeEEEEECchhh
Confidence 99888888899999999999987653322 2222222222 246778999999975
No 303
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.36 E-value=3.3e-12 Score=87.83 Aligned_cols=160 Identities=22% Similarity=0.307 Sum_probs=96.6
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc-----cccccccC
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-----LIPSYIRD 81 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~~~ 81 (175)
..-||+++|.+||||||+-.-+..+... +......+++..-.....-| ...+.+||++|++.+.. .-...+.+
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~n 81 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRN 81 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhhee
Confidence 3568999999999999998776654422 33344444444333332222 24689999999885443 34567889
Q ss_pred CcEEEEEEECCChhhHHhH---HHHHHHHHHhcCCCCcEEEEEeCCCCCCC--CCCCHHHHHHHHHh----cCCeEEEec
Q 030524 82 SSVAVVVYDVASRQSFLNT---SKWIDEVRTERGSDVIIVLVGNKTDLVEK--RQVSIEEGEAKSRE----LNVMFIETS 152 (175)
Q Consensus 82 ~d~~i~v~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~iiv~nk~D~~~~--~~~~~~~~~~~~~~----~~~~~~~~s 152 (175)
.+++|+|||++.++--..+ +.-++.+.++. +...+....+|.|+... ++....+....... .++..+++|
T Consensus 82 V~vli~vFDves~e~~~D~~~yqk~Le~ll~~S-P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Ts 160 (295)
T KOG3886|consen 82 VQVLIYVFDVESREMEKDFHYYQKCLEALLQNS-PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTS 160 (295)
T ss_pred heeeeeeeeccchhhhhhHHHHHHHHHHHHhcC-CcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccc
Confidence 9999999999977533333 33344444444 56777778899998643 22223333322222 334666666
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 030524 153 AKAGFNIKLCCHTLNSLI 170 (175)
Q Consensus 153 ~~~~~~v~~~f~~l~~~~ 170 (175)
.++ +.+...+..+....
T Consensus 161 iwD-etl~KAWS~iv~~l 177 (295)
T KOG3886|consen 161 IWD-ETLYKAWSSIVYNL 177 (295)
T ss_pred hhh-HHHHHHHHHHHHhh
Confidence 553 33444444444433
No 304
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.35 E-value=2.4e-11 Score=88.98 Aligned_cols=146 Identities=14% Similarity=0.166 Sum_probs=91.3
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCc----------ccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc---c
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNT----------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---L 74 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~ 74 (175)
..++|+++|+.|+||||++|.|++.....+ ..++..+......+.-++..+.+.++||||..++.. .
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 369999999999999999999998743322 223333455555555677788999999999543221 1
Q ss_pred cc-----------ccc--------------cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-
Q 030524 75 IP-----------SYI--------------RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE- 128 (175)
Q Consensus 75 ~~-----------~~~--------------~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~- 128 (175)
|. .|+ ...|+++|.+..+.. ++..+. .+++......+-+|.|+.|+|...
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~D---Ie~Mk~ls~~vNlIPVI~KaD~lT~ 177 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLD---IEAMKRLSKRVNLIPVIAKADTLTD 177 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHH---HHHHHHHhcccCeeeeeeccccCCH
Confidence 11 111 157999999986532 333322 122222224577888889999643
Q ss_pred -CCCCCHHHHHHHHHhcCCeEEEeccCCCCCH
Q 030524 129 -KRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159 (175)
Q Consensus 129 -~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 159 (175)
+...-.....+....+++++|. +.+.+.-
T Consensus 178 ~El~~~K~~I~~~i~~~nI~vf~--pyd~e~~ 207 (373)
T COG5019 178 DELAEFKERIREDLEQYNIPVFD--PYDPEDD 207 (373)
T ss_pred HHHHHHHHHHHHHHHHhCCceeC--CCCcccc
Confidence 2222344556667778888776 4555543
No 305
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.34 E-value=5.8e-12 Score=88.85 Aligned_cols=115 Identities=18% Similarity=0.146 Sum_probs=68.9
Q ss_pred eEEEEEEEeCCCccc-cccccccc-----cc--CCcEEEEEEECCC---hhhHHhHHHHHHHHHHhcCCCCcEEEEEeCC
Q 030524 56 RTVRLQLWDTAGQER-FRSLIPSY-----IR--DSSVAVVVYDVAS---RQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124 (175)
Q Consensus 56 ~~~~~~i~D~~G~~~-~~~~~~~~-----~~--~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~ 124 (175)
....+.++||||+-+ |.+..... +. ...+++++.|... +.+| +...+-.....++-.+|.+++.||+
T Consensus 114 ~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tF--MSNMlYAcSilyktklp~ivvfNK~ 191 (366)
T KOG1532|consen 114 EEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTF--MSNMLYACSILYKTKLPFIVVFNKT 191 (366)
T ss_pred cccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhH--HHHHHHHHHHHHhccCCeEEEEecc
Confidence 345689999999743 33322211 12 3467777887642 3333 3344444555555789999999999
Q ss_pred CCCCCCCC----CHHH-HHHHHH-------------------h--cCCeEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524 125 DLVEKRQV----SIEE-GEAKSR-------------------E--LNVMFIETSAKAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 125 D~~~~~~~----~~~~-~~~~~~-------------------~--~~~~~~~~s~~~~~~v~~~f~~l~~~~~~ 172 (175)
|+....-. ..-+ .++... + .++..+-||+.+|.|..++|..+-+.+-+
T Consensus 192 Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 192 DVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDE 265 (366)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHH
Confidence 98642100 0000 000000 0 14678999999999999999988776543
No 306
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.34 E-value=4.4e-11 Score=89.01 Aligned_cols=83 Identities=17% Similarity=0.147 Sum_probs=53.8
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCe---------------EEEEEEEeCCCccccc--
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQERFR-- 72 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~-- 72 (175)
++|+++|.||+|||||+|++.+........+..+.+.....+.+.+. ...+.+.|+||-..-.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 78999999999999999999987644332233333333323333221 1358999999943211
Q ss_pred --c---cccccccCCcEEEEEEECC
Q 030524 73 --S---LIPSYIRDSSVAVVVYDVA 92 (175)
Q Consensus 73 --~---~~~~~~~~~d~~i~v~d~~ 92 (175)
. ..-..++++|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1 1122357899999999984
No 307
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.34 E-value=3.7e-11 Score=88.49 Aligned_cols=117 Identities=17% Similarity=0.240 Sum_probs=83.4
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEECCChh----------hHHhHHHHHHHHHHhcC-CCCcEEEEEeCCC
Q 030524 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ----------SFLNTSKWIDEVRTERG-SDVIIVLVGNKTD 125 (175)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D 125 (175)
...+.++|++||..-+.-|-+++.+++++|||.++++.+ .+.+..+.++.+..+.. .+.++++++||.|
T Consensus 194 ~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~D 273 (354)
T KOG0082|consen 194 GLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKD 273 (354)
T ss_pred CCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHH
Confidence 367999999999988999999999999999999998432 34444455555555544 6899999999999
Q ss_pred CCCC---------------CCCCHHHHHHHHH--------hc--CCeEEEeccCCCCCHHHHHHHHHHHHhhh
Q 030524 126 LVEK---------------RQVSIEEGEAKSR--------EL--NVMFIETSAKAGFNIKLCCHTLNSLITVC 173 (175)
Q Consensus 126 ~~~~---------------~~~~~~~~~~~~~--------~~--~~~~~~~s~~~~~~v~~~f~~l~~~~~~~ 173 (175)
+.++ -....+++..+.. .. .+-...+.|.+..+|+.+|+.+.+.+...
T Consensus 274 LFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~ 346 (354)
T KOG0082|consen 274 LFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQN 346 (354)
T ss_pred HHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHH
Confidence 8532 1122233322222 11 23456668899999999999988887653
No 308
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.34 E-value=4.7e-12 Score=96.61 Aligned_cols=161 Identities=20% Similarity=0.357 Sum_probs=127.0
Q ss_pred CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 030524 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (175)
Q Consensus 5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (175)
.+...+|+.++|..++|||+|+++++.+.+.....+.. ..+.+++.+++....+.+.|.+|+.. ..|....|+
T Consensus 26 rsipelk~givg~~~sgktalvhr~ltgty~~~e~~e~--~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvda 98 (749)
T KOG0705|consen 26 RSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEG--GRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDA 98 (749)
T ss_pred cccchhheeeeecccCCceeeeeeeccceeccccCCcC--ccceeeEEeeccceEeeeecccCCch-----hhhhhhccc
Confidence 34567999999999999999999999888776644444 35677777888888889999888443 446677999
Q ss_pred EEEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCC--CCCCCCHHHHHHHHHhc-CCeEEEeccCCCCCHH
Q 030524 85 AVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLV--EKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIK 160 (175)
Q Consensus 85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~v~ 160 (175)
+||||.+.+..+|+.+..+...+..+.. ..+|+++++++.-.. ..+....++.++++..+ .+.+|+.++..|.++.
T Consensus 99 vIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~ 178 (749)
T KOG0705|consen 99 VVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVE 178 (749)
T ss_pred eEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHH
Confidence 9999999999999999988887776654 578888887765542 34555666666665555 5799999999999999
Q ss_pred HHHHHHHHHHhh
Q 030524 161 LCCHTLNSLITV 172 (175)
Q Consensus 161 ~~f~~l~~~~~~ 172 (175)
..|..+..++..
T Consensus 179 rvf~~~~~k~i~ 190 (749)
T KOG0705|consen 179 RVFQEVAQKIVQ 190 (749)
T ss_pred HHHHHHHHHHHH
Confidence 999998887754
No 309
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=5.4e-11 Score=86.58 Aligned_cols=158 Identities=23% Similarity=0.202 Sum_probs=92.0
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCC----Cccc---ccceeeEEEEEEE-------ECCeEEEEEEEeCCCcccccc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD----NTYQ---ATIGIDFLSKTMY-------LEDRTVRLQLWDTAGQERFRS 73 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~----~~~~---~~~~~~~~~~~~~-------~~~~~~~~~i~D~~G~~~~~~ 73 (175)
..+++.++|+..||||+|.+++..-... .+.. ...+.+..-.... -.+..+.+.+.|+|||..
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas--- 82 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS--- 82 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH---
Confidence 3499999999999999999998653211 1111 1122222111111 145567899999999764
Q ss_pred ccccccc---CCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC--C-HHHHHHHHHhc---
Q 030524 74 LIPSYIR---DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--S-IEEGEAKSREL--- 144 (175)
Q Consensus 74 ~~~~~~~---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~--~-~~~~~~~~~~~--- 144 (175)
+++..+. -.|..++|+|+.....-+...-+ .+-.. -....++|+||.|...+.+. . ....++..+.+
T Consensus 83 LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcL--iig~~--~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t 158 (522)
T KOG0461|consen 83 LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECL--IIGEL--LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLEST 158 (522)
T ss_pred HHHHHHhhhheeeeeeEEEehhcccccccchhh--hhhhh--hccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhc
Confidence 4444444 45888999998755322222111 11111 23456777788886544221 1 12222222222
Q ss_pred ----CCeEEEeccCCC----CCHHHHHHHHHHHHhh
Q 030524 145 ----NVMFIETSAKAG----FNIKLCCHTLNSLITV 172 (175)
Q Consensus 145 ----~~~~~~~s~~~~----~~v~~~f~~l~~~~~~ 172 (175)
+.|++++|+..| +.+.++...|.+.+..
T Consensus 159 ~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 159 GFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred CcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence 369999999999 6777777766666543
No 310
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.31 E-value=2.8e-11 Score=88.96 Aligned_cols=103 Identities=17% Similarity=0.057 Sum_probs=63.8
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHH
Q 030524 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEE 136 (175)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~ 136 (175)
++.+.|+||+|-.... ......+|.++++-.. ++-+++......+ .++|.++++||+|+..........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~---~~~~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~ 194 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIP---GTGDDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIAR 194 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecC---CccHHHHHHHHHH-----hhhccEEEEEcccccchhHHHHHH
Confidence 4678999999854211 2345667888888543 3334444443333 246778999999986433211000
Q ss_pred ------HHHHHH---hcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 030524 137 ------GEAKSR---ELNVMFIETSAKAGFNIKLCCHTLNSLI 170 (175)
Q Consensus 137 ------~~~~~~---~~~~~~~~~s~~~~~~v~~~f~~l~~~~ 170 (175)
...+.. .++.+++.+|++++.|+.++++++.+..
T Consensus 195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 011111 1234689999999999999999988753
No 311
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.30 E-value=1.1e-11 Score=83.55 Aligned_cols=63 Identities=19% Similarity=0.253 Sum_probs=42.7
Q ss_pred EEEEEeCCCcc----cccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCC
Q 030524 59 RLQLWDTAGQE----RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124 (175)
Q Consensus 59 ~~~i~D~~G~~----~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~ 124 (175)
.+.|+|+||-. .....+..++..+|++|+|.+.++..+-.....+.+..... ....++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence 48999999953 33456788889999999999998865544444443333332 33388888884
No 312
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=1.4e-11 Score=87.65 Aligned_cols=146 Identities=18% Similarity=0.166 Sum_probs=100.1
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcC---C-------CC----CcccccceeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYD---K-------FD----NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~---~-------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 71 (175)
...+.+|..+|+.+.|||||.-.+..- . +. .......++++....+..+-....+...|+|||.+|
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY 88 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence 456799999999999999998776431 1 00 111234556666666666555667899999999999
Q ss_pred cccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCCC---HHHHHHHHHhcCC-
Q 030524 72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQVS---IEEGEAKSRELNV- 146 (175)
Q Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nk~D~~~~~~~~---~~~~~~~~~~~~~- 146 (175)
-..+-.-..+.|+.|+|.++++..- ....++++....-++| +++++||+|+.++.+.. ..+.+.+...++.
T Consensus 89 vKNMItgAaqmDgAILVVsA~dGpm----PqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~ 164 (394)
T COG0050 89 VKNMITGAAQMDGAILVVAATDGPM----PQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFP 164 (394)
T ss_pred HHHHhhhHHhcCccEEEEEcCCCCC----CcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCC
Confidence 9888777889999999999998632 2222333333334565 67778999998643332 4456777777764
Q ss_pred ----eEEEeccCC
Q 030524 147 ----MFIETSAKA 155 (175)
Q Consensus 147 ----~~~~~s~~~ 155 (175)
|++.-|+..
T Consensus 165 gd~~Pii~gSal~ 177 (394)
T COG0050 165 GDDTPIIRGSALK 177 (394)
T ss_pred CCCcceeechhhh
Confidence 677777654
No 313
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.29 E-value=8.3e-11 Score=92.59 Aligned_cols=119 Identities=12% Similarity=0.142 Sum_probs=74.1
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCccccc-------c---ccc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-------S---LIP 76 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~---~~~ 76 (175)
-+++|+++|.+|+||||++|.+++.... .......+..........++ ..+.++||||..+.. . .+.
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~Ik 194 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSVK 194 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHHH
Confidence 3579999999999999999999997643 22221222222222233343 568999999954321 1 122
Q ss_pred cccc--CCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCC--CcEEEEEeCCCCCC
Q 030524 77 SYIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD--VIIVLVGNKTDLVE 128 (175)
Q Consensus 77 ~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiv~nk~D~~~ 128 (175)
.++. .+|++++|..++......+-..++..+...++.. ..+||+.|+.|..+
T Consensus 195 ~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 195 KFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 2333 4799999998764333223335566666666522 44788889999764
No 314
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=6.9e-11 Score=94.67 Aligned_cols=119 Identities=22% Similarity=0.210 Sum_probs=85.9
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCCC----C------------cccccceeeEEEEEEEECCe-EEEEEEEeCCCc
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD----N------------TYQATIGIDFLSKTMYLEDR-TVRLQLWDTAGQ 68 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~----~------------~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~ 68 (175)
..+-.+|.++|+-.+|||||.++++...-. . ......+++.....+.+.-. .+.+.++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 446689999999999999999998753110 0 01112344555444444333 478999999999
Q ss_pred ccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 030524 69 ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (175)
Q Consensus 69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~ 128 (175)
-+|......-++-+|++++|+|+...-..+.-.-|.+... .++|.++++||+|...
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~----~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK----YGVPRILFVNKMDRLG 142 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhh----cCCCeEEEEECccccc
Confidence 9999999999999999999999986644444444433332 4799999999999643
No 315
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.25 E-value=8.8e-11 Score=84.70 Aligned_cols=81 Identities=17% Similarity=0.169 Sum_probs=52.6
Q ss_pred EEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCe---------------EEEEEEEeCCCccccc----
Q 030524 12 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQERFR---- 72 (175)
Q Consensus 12 i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~---- 72 (175)
|+++|.||+|||||+|++.+........+..+.+.....+.+.+. ...+.++|+||-..-.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 579999999999999999997764333343333433333333332 2358999999943211
Q ss_pred cc---ccccccCCcEEEEEEECC
Q 030524 73 SL---IPSYIRDSSVAVVVYDVA 92 (175)
Q Consensus 73 ~~---~~~~~~~~d~~i~v~d~~ 92 (175)
.+ .-..++++|+++.|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 11 122356899999999873
No 316
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=1.2e-10 Score=87.07 Aligned_cols=154 Identities=21% Similarity=0.152 Sum_probs=104.4
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC---CCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDK---FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (175)
-|+..|+-..|||||+..+.+.. ..+......+.+..-.....++. .+.|+|.||++++-+.+-.-+...|..++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~--~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDG--VMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCC--ceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 47788999999999999988753 23344444555555555444443 78999999999998888878889999999
Q ss_pred EEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhc---CCeEEEeccCCCCCHHHHHH
Q 030524 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL---NVMFIETSAKAGFNIKLCCH 164 (175)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~---~~~~~~~s~~~~~~v~~~f~ 164 (175)
|++.++.-.-+ ..+.+ .+....+ ....++++||+|..++. ......++..... +.+++.+|+.+|+|++++.+
T Consensus 80 vV~~deGl~~q-tgEhL-~iLdllg-i~~giivltk~D~~d~~-r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~ 155 (447)
T COG3276 80 VVAADEGLMAQ-TGEHL-LILDLLG-IKNGIIVLTKADRVDEA-RIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKN 155 (447)
T ss_pred EEeCccCcchh-hHHHH-HHHHhcC-CCceEEEEeccccccHH-HHHHHHHHHHhhcccccccccccccccCCCHHHHHH
Confidence 99986542211 12222 2223322 23347888999986543 1122222222222 35889999999999999999
Q ss_pred HHHHHH
Q 030524 165 TLNSLI 170 (175)
Q Consensus 165 ~l~~~~ 170 (175)
.|....
T Consensus 156 ~l~~L~ 161 (447)
T COG3276 156 ELIDLL 161 (447)
T ss_pred HHHHhh
Confidence 998876
No 317
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=2.6e-10 Score=84.17 Aligned_cols=142 Identities=15% Similarity=0.186 Sum_probs=86.4
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCCc---------ccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc---cc-
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNT---------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---LI- 75 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~- 75 (175)
.++++++|+.|.|||||+|.|+......+ ...+..+......+.-+|-.+.+++.||||..+... .|
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 49999999999999999999988744322 122333444444445567788899999999432211 11
Q ss_pred ---------------------ccccc--CCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC--C
Q 030524 76 ---------------------PSYIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK--R 130 (175)
Q Consensus 76 ---------------------~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~--~ 130 (175)
+.-+. ..|+++|.+..+.. ++..+. ..+.......+.+|.|+.|+|.... .
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~D---i~~Mk~l~~~vNiIPVI~KaD~lT~~El 176 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLD---IEFMKKLSKKVNLIPVIAKADTLTKDEL 176 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhh---HHHHHHHhccccccceeeccccCCHHHH
Confidence 11122 67999999986532 222222 2223333356778888899996432 2
Q ss_pred CCCHHHHHHHHHhcCCeEEEeccC
Q 030524 131 QVSIEEGEAKSRELNVMFIETSAK 154 (175)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~s~~ 154 (175)
..-...+.+.+..++++++....-
T Consensus 177 ~~~K~~I~~~i~~~nI~vf~fp~~ 200 (366)
T KOG2655|consen 177 NQFKKRIRQDIEEHNIKVFDFPTD 200 (366)
T ss_pred HHHHHHHHHHHHHcCcceecCCCC
Confidence 222334455566677776665444
No 318
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.22 E-value=7e-11 Score=85.32 Aligned_cols=56 Identities=23% Similarity=0.234 Sum_probs=40.9
Q ss_pred CcEEEEEeCCCCCCCCCCCHHHHHHHHHhc--CCeEEEeccCCCCCHHHHHHHHHHHH
Q 030524 115 VIIVLVGNKTDLVEKRQVSIEEGEAKSREL--NVMFIETSAKAGFNIKLCCHTLNSLI 170 (175)
Q Consensus 115 ~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~v~~~f~~l~~~~ 170 (175)
.+-++++||+|+.+......+...+..+.. ..+++.+|+++|+|++++.+||.+..
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~~ 288 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQR 288 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 455888999998653333344444444443 46999999999999999999998754
No 319
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.21 E-value=1.6e-10 Score=80.24 Aligned_cols=151 Identities=13% Similarity=0.153 Sum_probs=86.9
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCC---------cccccceeeEEEEEEEECCeEEEEEEEeCCCccccc---cccc
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDN---------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR---SLIP 76 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---~~~~ 76 (175)
.++|+++|.+|.|||||+|++....... ....|..+......+.-++-..++.++||||..++. ..|.
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe 125 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE 125 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence 5899999999999999999987654322 112223333334444456667889999999944322 1222
Q ss_pred cc-----------------------cc--CCcEEEEEEECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCC--C
Q 030524 77 SY-----------------------IR--DSSVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLV--E 128 (175)
Q Consensus 77 ~~-----------------------~~--~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~--~ 128 (175)
.. ++ ..|+++|.+..+.. +++.+. ..++.+. .-+-++.|+.|.|.. +
T Consensus 126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt----~vvNvvPVIakaDtlTle 200 (336)
T KOG1547|consen 126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLT----EVVNVVPVIAKADTLTLE 200 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHh----hhheeeeeEeecccccHH
Confidence 11 11 56899999887632 333322 2223332 235567777899942 2
Q ss_pred CCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHH
Q 030524 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCH 164 (175)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~ 164 (175)
++..=.+..++-...+++.+++-.+.+-+.-+...+
T Consensus 201 Er~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN 236 (336)
T KOG1547|consen 201 ERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLN 236 (336)
T ss_pred HHHHHHHHHHHHHHhcCcccccccccccchhHHHHH
Confidence 222223334444556777777766655443333333
No 320
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.20 E-value=1.6e-10 Score=82.75 Aligned_cols=105 Identities=16% Similarity=0.074 Sum_probs=66.6
Q ss_pred CeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCH
Q 030524 55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI 134 (175)
Q Consensus 55 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~ 134 (175)
.-++.+.|++|.|-..-... ...-+|.+++|--..-.+..+.++.-+.++-. ++++||.|.......-.
T Consensus 141 AaG~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD--------i~vINKaD~~~A~~a~r 209 (323)
T COG1703 141 AAGYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGIKAGIMEIAD--------IIVINKADRKGAEKAAR 209 (323)
T ss_pred hcCCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHHHhhhhhhhh--------eeeEeccChhhHHHHHH
Confidence 34567889999874432222 33458999888876666667777665555543 78889999532211100
Q ss_pred --HHHHHHH----HhcC--CeEEEeccCCCCCHHHHHHHHHHHH
Q 030524 135 --EEGEAKS----RELN--VMFIETSAKAGFNIKLCCHTLNSLI 170 (175)
Q Consensus 135 --~~~~~~~----~~~~--~~~~~~s~~~~~~v~~~f~~l~~~~ 170 (175)
..+..+. .+.+ .+++.+|+..|+|+.++++.+.+..
T Consensus 210 ~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~ 253 (323)
T COG1703 210 ELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHR 253 (323)
T ss_pred HHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHH
Confidence 1111111 1223 3899999999999999999987654
No 321
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.19 E-value=3.6e-10 Score=80.07 Aligned_cols=68 Identities=21% Similarity=0.259 Sum_probs=42.1
Q ss_pred EEEEEEeCCCccc-------------ccccccccccCC-cEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeC
Q 030524 58 VRLQLWDTAGQER-------------FRSLIPSYIRDS-SVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNK 123 (175)
Q Consensus 58 ~~~~i~D~~G~~~-------------~~~~~~~~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk 123 (175)
..+.++|+||... ...+...|+++. +++++|.|+.....-+........+ .+.+.++++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~l---d~~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEV---DPQGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHH---HHcCCcEEEEEEC
Confidence 4689999999532 112456677754 5888899876432211212222222 2257899999999
Q ss_pred CCCCC
Q 030524 124 TDLVE 128 (175)
Q Consensus 124 ~D~~~ 128 (175)
.|..+
T Consensus 202 ~D~~~ 206 (240)
T smart00053 202 LDLMD 206 (240)
T ss_pred CCCCC
Confidence 99764
No 322
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.18 E-value=2e-11 Score=86.02 Aligned_cols=151 Identities=15% Similarity=0.128 Sum_probs=85.5
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCC-----------CCccccc---------------ceeeEEEEEEEE--------
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKF-----------DNTYQAT---------------IGIDFLSKTMYL-------- 53 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~-----------~~~~~~~---------------~~~~~~~~~~~~-------- 53 (175)
+...|.+.|+||+|||||++.|..... .+....+ .....+....-.
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 568999999999999999998754211 0000000 001111111111
Q ss_pred ----------CCeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeC
Q 030524 54 ----------EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNK 123 (175)
Q Consensus 54 ----------~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk 123 (175)
+.-++.+.|++|.|-..-... ...-+|.+++|....-.+..+.++.-+.++.. ++|+||
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~---I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD--------i~vVNK 176 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSEVD---IADMADTVVLVLVPGLGDEIQAIKAGIMEIAD--------IFVVNK 176 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHHHH---HHTTSSEEEEEEESSTCCCCCTB-TTHHHH-S--------EEEEE-
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccHHH---HHHhcCeEEEEecCCCccHHHHHhhhhhhhcc--------EEEEeC
Confidence 112356888899873322222 24458999999988777777777765555533 788899
Q ss_pred CCCCCCCCCCHHHHHHHHH---h----cCCeEEEeccCCCCCHHHHHHHHHHHH
Q 030524 124 TDLVEKRQVSIEEGEAKSR---E----LNVMFIETSAKAGFNIKLCCHTLNSLI 170 (175)
Q Consensus 124 ~D~~~~~~~~~~~~~~~~~---~----~~~~~~~~s~~~~~~v~~~f~~l~~~~ 170 (175)
+|...... ...+.+.... . +..|++.+||.++.|+.++++.+.+..
T Consensus 177 aD~~gA~~-~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 177 ADRPGADR-TVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp -SHHHHHH-HHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CChHHHHH-HHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 99532211 1122222222 1 234899999999999999999887643
No 323
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=3.5e-10 Score=84.61 Aligned_cols=116 Identities=22% Similarity=0.259 Sum_probs=83.4
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCC--------C----CC--------cccccceeeEEEEEEEECCeEEEEEEEeCC
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDK--------F----DN--------TYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~--------~----~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 66 (175)
.++...+++-+|.+|||||...|+.-. + .. +.....++...+...+.+.....+.+.|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 456789999999999999999986411 0 00 011134555666666677677889999999
Q ss_pred CcccccccccccccCCcEEEEEEECCChhhHHh-HHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524 67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (175)
Q Consensus 67 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nk~D~~ 127 (175)
||++|..-+=.-+-.+|.+++|+|+..+ ++. ..++++-++ . +++|++-++||.|..
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKG--iE~qT~KLfeVcr-l--R~iPI~TFiNKlDR~ 146 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKG--IEPQTLKLFEVCR-L--RDIPIFTFINKLDRE 146 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccC--ccHHHHHHHHHHh-h--cCCceEEEeeccccc
Confidence 9999988776667789999999998754 333 233333332 2 689999999999953
No 324
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=2.2e-10 Score=79.68 Aligned_cols=162 Identities=14% Similarity=0.134 Sum_probs=101.9
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccccccc---ccccccCCcEEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL---IPSYIRDSSVAV 86 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~---~~~~~~~~d~~i 86 (175)
.+|+++|...+||||+..-..++..+.+.....+... ...-.+.+.-+.+.+||.||+-.+..- ....++++.++|
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTsk-i~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSK-ITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCc-ccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 5699999999999999887766544332211111010 111112335578999999998665542 345678999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcC--CCCcEEEEEeCCCCC-CCCCCCHH-----HHHHHHHhcC-----CeEEEecc
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLV-EKRQVSIE-----EGEAKSRELN-----VMFIETSA 153 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~iiv~nk~D~~-~~~~~~~~-----~~~~~~~~~~-----~~~~~~s~ 153 (175)
||+|+.+ +-.+.+.++...+....+ +++.+-+++.|.|-. ++..+..+ +...-....| +.|+.+|.
T Consensus 107 fvIDaQd-dy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI 185 (347)
T KOG3887|consen 107 FVIDAQD-DYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI 185 (347)
T ss_pred EEEechH-HHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee
Confidence 9999864 445556666666666554 778888889999942 22211111 1111111222 36777776
Q ss_pred CCCCCHHHHHHHHHHHHhhhh
Q 030524 154 KAGFNIKLCCHTLNSLITVCI 174 (175)
Q Consensus 154 ~~~~~v~~~f~~l~~~~~~~~ 174 (175)
.+. ++.|.|..+.+++.+..
T Consensus 186 yDH-SIfEAFSkvVQkLipqL 205 (347)
T KOG3887|consen 186 YDH-SIFEAFSKVVQKLIPQL 205 (347)
T ss_pred cch-HHHHHHHHHHHHHhhhc
Confidence 654 59999999999887654
No 325
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=3.3e-10 Score=88.59 Aligned_cols=115 Identities=21% Similarity=0.231 Sum_probs=82.3
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccc-----------------cceeeEEEEEE---EECCeEEEEEEEeCCC
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA-----------------TIGIDFLSKTM---YLEDRTVRLQLWDTAG 67 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~-----------------~~~~~~~~~~~---~~~~~~~~~~i~D~~G 67 (175)
...+++++|+-++|||+|++.|..+.-+.-... ..++......+ ..+++.+.+.+.||||
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPG 206 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPG 206 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCC
Confidence 458999999999999999999887643221111 11111222222 2366778899999999
Q ss_pred cccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 030524 68 QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126 (175)
Q Consensus 68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~ 126 (175)
|-.|...+..-+..+|++++++|+...-.+.. .+.+.+... .+.|+++|+||.|.
T Consensus 207 HVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikhaiq---~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 207 HVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHAIQ---NRLPIVVVINKVDR 261 (971)
T ss_pred cccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHHHh---ccCcEEEEEehhHH
Confidence 99999999999999999999999976644432 333333322 57999999999995
No 326
>PRK12289 GTPase RsgA; Reviewed
Probab=99.09 E-value=1.4e-09 Score=81.23 Aligned_cols=92 Identities=16% Similarity=0.225 Sum_probs=67.7
Q ss_pred ccccccccCCcEEEEEEECCChh-hHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEe
Q 030524 73 SLIPSYIRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIET 151 (175)
Q Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (175)
.+.+..+.++|.+++|+|+.++. ....+.+|+..... .++|+++|+||+|+....+ ..........++++++.+
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~--~~~~~~~~~~~g~~v~~i 155 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTE--QQQWQDRLQQWGYQPLFI 155 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHH--HHHHHHHHHhcCCeEEEE
Confidence 45556688999999999998775 44456777665522 5799999999999864322 122223334678899999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 030524 152 SAKAGFNIKLCCHTLNSL 169 (175)
Q Consensus 152 s~~~~~~v~~~f~~l~~~ 169 (175)
|+.++.|+++++..+...
T Consensus 156 SA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 156 SVETGIGLEALLEQLRNK 173 (352)
T ss_pred EcCCCCCHHHHhhhhccc
Confidence 999999999999988654
No 327
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.08 E-value=2.2e-08 Score=70.27 Aligned_cols=101 Identities=14% Similarity=0.219 Sum_probs=65.0
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccc-------ccccccccc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYIR 80 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~ 80 (175)
..-+++++|-|.+|||||+..+.............+.+...-.+..++ ..+++.|.||--+- ....-...+
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavAr 138 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVAR 138 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEee
Confidence 457999999999999999999887554322222222333333333444 56899999993211 112334467
Q ss_pred CCcEEEEEEECCChhhHHh-HHHHHHHHHHh
Q 030524 81 DSSVAVVVYDVASRQSFLN-TSKWIDEVRTE 110 (175)
Q Consensus 81 ~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~ 110 (175)
.+|.+++|.|++..+.-+. +.+.++.+-..
T Consensus 139 taDlilMvLDatk~e~qr~~le~ELe~vGiR 169 (364)
T KOG1486|consen 139 TADLILMVLDATKSEDQREILEKELEAVGIR 169 (364)
T ss_pred cccEEEEEecCCcchhHHHHHHHHHHHhcee
Confidence 8999999999997654443 56666665443
No 328
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.07 E-value=1.1e-09 Score=75.53 Aligned_cols=93 Identities=25% Similarity=0.303 Sum_probs=65.1
Q ss_pred ccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HhcC
Q 030524 71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELN 145 (175)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~-----~~~~ 145 (175)
+...+..+++++|++++|+|++++..- |...+... ..+.|+++|+||+|+..... .......+. ...+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~-~~~~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF-GGNNPVILVGNKIDLLPKDK-NLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh-cCCCcEEEEEEchhcCCCCC-CHHHHHHHHHHHHHhhcC
Confidence 577888899999999999999875321 12222222 24689999999999864322 233333333 2233
Q ss_pred C---eEEEeccCCCCCHHHHHHHHHHHH
Q 030524 146 V---MFIETSAKAGFNIKLCCHTLNSLI 170 (175)
Q Consensus 146 ~---~~~~~s~~~~~~v~~~f~~l~~~~ 170 (175)
. .++.+|+++|+|+++++..+.+.+
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3 689999999999999999998765
No 329
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.07 E-value=5.6e-09 Score=79.60 Aligned_cols=113 Identities=17% Similarity=0.211 Sum_probs=80.6
Q ss_pred EEEEEEeCCCcccccccccccccCCcEEEEEEECCCh----------hhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCC
Q 030524 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR----------QSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDL 126 (175)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~ 126 (175)
..+.++|++|+...+.-|.+++.+++++|||+++++- ..+.+.-..++.+..... .+.|+++++||.|+
T Consensus 236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence 5689999999999999999999999999999998732 235554555555555433 68999999999996
Q ss_pred CCC----------------C--CCCHHHHHHHHHh------------cCCeEEEeccCCCCCHHHHHHHHHHHH
Q 030524 127 VEK----------------R--QVSIEEGEAKSRE------------LNVMFIETSAKAGFNIKLCCHTLNSLI 170 (175)
Q Consensus 127 ~~~----------------~--~~~~~~~~~~~~~------------~~~~~~~~s~~~~~~v~~~f~~l~~~~ 170 (175)
..+ . ..+.+.+..+... ..+.+..++|.+.+++..+|+.+.+.|
T Consensus 316 f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 316 FEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 321 1 1334455444432 123467889999999999999887654
No 330
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=1.5e-08 Score=74.96 Aligned_cols=84 Identities=17% Similarity=0.195 Sum_probs=53.1
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEE------------C--C--eEEEEEEEeCCCcccc-
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL------------E--D--RTVRLQLWDTAGQERF- 71 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~------------~--~--~~~~~~i~D~~G~~~~- 71 (175)
.+++.++|.||+|||||.|.+..........|-.+++...-...+ . . ....+.++|.+|.-.-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 478999999999999999999987655322332222222111111 1 1 1346899999983211
Q ss_pred ---cc---cccccccCCcEEEEEEECC
Q 030524 72 ---RS---LIPSYIRDSSVAVVVYDVA 92 (175)
Q Consensus 72 ---~~---~~~~~~~~~d~~i~v~d~~ 92 (175)
+. ..-.-++++|+++-|+++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 11 2223367899999999887
No 331
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.04 E-value=3.3e-10 Score=81.81 Aligned_cols=153 Identities=15% Similarity=0.120 Sum_probs=95.2
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccc---------ccccccc
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------FRSLIPS 77 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~ 77 (175)
.....|.++|-+|+|||||++.|.+-...+...-..+.+........++.. .+.+.||.|.-. |+. +-.
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~A-TLe 253 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQA-TLE 253 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHH-HHH
Confidence 345679999999999999999999765554444444444444444454443 588999999321 111 122
Q ss_pred cccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcC-CCCc----EEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEec
Q 030524 78 YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVI----IVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETS 152 (175)
Q Consensus 78 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~----~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s 152 (175)
-+..+|.++=|.|+++|.--+... -....++..+ +..| ++=|-||.|..+.... ...++ -+.+|
T Consensus 254 eVaeadlllHvvDiShP~ae~q~e-~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e--------~E~n~--~v~is 322 (410)
T KOG0410|consen 254 EVAEADLLLHVVDISHPNAEEQRE-TVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE--------EEKNL--DVGIS 322 (410)
T ss_pred HHhhcceEEEEeecCCccHHHHHH-HHHHHHHhcCCCcHHHHhHHHhhccccccccccCc--------cccCC--ccccc
Confidence 356899999999999985433322 2233333332 2233 3445577776432211 11122 46799
Q ss_pred cCCCCCHHHHHHHHHHHHhh
Q 030524 153 AKAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 153 ~~~~~~v~~~f~~l~~~~~~ 172 (175)
+.+|+|++++.+.+-.+...
T Consensus 323 altgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 323 ALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred cccCccHHHHHHHHHHHhhh
Confidence 99999999998887666543
No 332
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.04 E-value=1.5e-09 Score=79.39 Aligned_cols=87 Identities=16% Similarity=0.144 Sum_probs=67.3
Q ss_pred ccccCCcEEEEEEECCChh-hHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCC
Q 030524 77 SYIRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA 155 (175)
Q Consensus 77 ~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 155 (175)
..+.++|.+++|+|+.++. ++..+.+|+..+.. .++|+++|+||+|+.++.+ ...........+.+++.+|+++
T Consensus 74 ~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~~ 148 (287)
T cd01854 74 VIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAKT 148 (287)
T ss_pred eEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECCC
Confidence 3478999999999999887 88888888776654 4689999999999864311 1222333445788999999999
Q ss_pred CCCHHHHHHHHHH
Q 030524 156 GFNIKLCCHTLNS 168 (175)
Q Consensus 156 ~~~v~~~f~~l~~ 168 (175)
+.|+++++..|..
T Consensus 149 g~gi~~L~~~L~~ 161 (287)
T cd01854 149 GEGLDELREYLKG 161 (287)
T ss_pred CccHHHHHhhhcc
Confidence 9999999988754
No 333
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.02 E-value=8.4e-10 Score=73.62 Aligned_cols=93 Identities=23% Similarity=0.263 Sum_probs=63.3
Q ss_pred cccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEe
Q 030524 72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIET 151 (175)
Q Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (175)
+.++++.+.++|++++|+|++++..... ..+ ..... ..+.|+++++||+|+.+... ......+....+.+++.+
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l-~~~~~--~~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~i 76 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS-RKL-ERYVL--ELGKKLLIVLNKADLVPKEV--LEKWKSIKESEGIPVVYV 76 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC-HHH-HHHHH--hCCCcEEEEEEhHHhCCHHH--HHHHHHHHHhCCCcEEEE
Confidence 4566777888999999999987643222 111 11111 14689999999999853211 111112334456789999
Q ss_pred ccCCCCCHHHHHHHHHHHH
Q 030524 152 SAKAGFNIKLCCHTLNSLI 170 (175)
Q Consensus 152 s~~~~~~v~~~f~~l~~~~ 170 (175)
|++++.|++++++.+.+.+
T Consensus 77 Sa~~~~gi~~L~~~l~~~~ 95 (156)
T cd01859 77 SAKERLGTKILRRTIKELA 95 (156)
T ss_pred EccccccHHHHHHHHHHHH
Confidence 9999999999999988765
No 334
>PRK00098 GTPase RsgA; Reviewed
Probab=99.01 E-value=1.9e-09 Score=79.17 Aligned_cols=86 Identities=20% Similarity=0.195 Sum_probs=64.3
Q ss_pred ccCCcEEEEEEECCChhhHHh-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCC
Q 030524 79 IRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF 157 (175)
Q Consensus 79 ~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 157 (175)
+.++|.+++|+|+.+++.... +.+|+..+.. .++|+++|+||+|+.+..+ ............+++++.+|+++++
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g~ 153 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEGE 153 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCCc
Confidence 489999999999988865544 4667665543 4789999999999853221 1223344455678899999999999
Q ss_pred CHHHHHHHHHH
Q 030524 158 NIKLCCHTLNS 168 (175)
Q Consensus 158 ~v~~~f~~l~~ 168 (175)
|+++++..+..
T Consensus 154 gi~~L~~~l~g 164 (298)
T PRK00098 154 GLDELKPLLAG 164 (298)
T ss_pred cHHHHHhhccC
Confidence 99999988753
No 335
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=2e-09 Score=78.38 Aligned_cols=147 Identities=19% Similarity=0.167 Sum_probs=98.9
Q ss_pred CCCCceeEEEECCCCCCHHHHHHHHhcC----------CCC----CcccccceeeEEEEEEEECCeEEEEEEEeCCCccc
Q 030524 5 SALAKYKLVFLGDQSVGKTSIITRFMYD----------KFD----NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70 (175)
Q Consensus 5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~----------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 70 (175)
.+..+++|.-+|+...|||||.-.+..- .+. .......++++....+..+-....+.=.|+|||.+
T Consensus 50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD 129 (449)
T KOG0460|consen 50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD 129 (449)
T ss_pred cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH
Confidence 3456799999999999999998776431 111 11122455666666665555556778889999999
Q ss_pred ccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC---CCHHHHHHHHHhcC-
Q 030524 71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQ---VSIEEGEAKSRELN- 145 (175)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nk~D~~~~~~---~~~~~~~~~~~~~~- 145 (175)
|-..+-.-..+.|+.|+|+.++|..- ...+ ++++...--+++ +++++||.|+.++.+ .-+-+.+++..+++
T Consensus 130 YIKNMItGaaqMDGaILVVaatDG~M-PQTr---EHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf 205 (449)
T KOG0460|consen 130 YIKNMITGAAQMDGAILVVAATDGPM-PQTR---EHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGF 205 (449)
T ss_pred HHHHhhcCccccCceEEEEEcCCCCC-cchH---HHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCC
Confidence 99988888889999999999998732 2223 333333323444 667789999874322 22445677777776
Q ss_pred ----CeEEEeccCC
Q 030524 146 ----VMFIETSAKA 155 (175)
Q Consensus 146 ----~~~~~~s~~~ 155 (175)
+|++.-||..
T Consensus 206 ~Gd~~PvI~GSAL~ 219 (449)
T KOG0460|consen 206 DGDNTPVIRGSALC 219 (449)
T ss_pred CCCCCCeeecchhh
Confidence 4787776654
No 336
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.97 E-value=1.8e-09 Score=70.88 Aligned_cols=54 Identities=28% Similarity=0.355 Sum_probs=38.1
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCc
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 68 (175)
+++++|.+|+|||||+|++++..... .....+.+.....+.+++ .+.+|||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVS-VSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcee-eCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 89999999999999999999876532 122222333444444544 4799999994
No 337
>PRK12288 GTPase RsgA; Reviewed
Probab=98.97 E-value=5.3e-09 Score=78.14 Aligned_cols=88 Identities=17% Similarity=0.159 Sum_probs=67.0
Q ss_pred ccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC-CHHHHHHHHHhcCCeEEEeccCCCC
Q 030524 79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-SIEEGEAKSRELNVMFIETSAKAGF 157 (175)
Q Consensus 79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~ 157 (175)
..|+|.+++|++.....++..+.+|+..... .++|+++|+||+|+.+..+. ............+++++.+|+++++
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 4679999999999877889899999775432 46899999999999643211 1122233344568899999999999
Q ss_pred CHHHHHHHHHHH
Q 030524 158 NIKLCCHTLNSL 169 (175)
Q Consensus 158 ~v~~~f~~l~~~ 169 (175)
|+++++..|...
T Consensus 195 GideL~~~L~~k 206 (347)
T PRK12288 195 GLEELEAALTGR 206 (347)
T ss_pred CHHHHHHHHhhC
Confidence 999999998754
No 338
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.92 E-value=3.5e-09 Score=78.27 Aligned_cols=157 Identities=16% Similarity=0.161 Sum_probs=95.0
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccc----------------eeeEEEEEE------E-----------
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATI----------------GIDFLSKTM------Y----------- 52 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~----------------~~~~~~~~~------~----------- 52 (175)
.+.++.+...|+.+.|||||...|.-+......-.+. .+.+...-+ .
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 4567999999999999999999887665543322211 111111100 0
Q ss_pred --ECCeEEEEEEEeCCCcccccccc--cccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 030524 53 --LEDRTVRLQLWDTAGQERFRSLI--PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (175)
Q Consensus 53 --~~~~~~~~~i~D~~G~~~~~~~~--~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~ 128 (175)
++...--+.+.|+.||+.|.... -.+-.+.|..+++..+++.-+ .+.+ +++-.....+.|++++.||+|+.+
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~--~~tk--EHLgi~~a~~lPviVvvTK~D~~~ 269 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT--KMTK--EHLGIALAMELPVIVVVTKIDMVP 269 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc--hhhh--HhhhhhhhhcCCEEEEEEecccCc
Confidence 11122347899999999877533 223346899999999987632 3322 223223335899999999999864
Q ss_pred CCCC------------------------CHHHHHHHHHhcC---CeEEEeccCCCCCHHHHHHHH
Q 030524 129 KRQV------------------------SIEEGEAKSRELN---VMFIETSAKAGFNIKLCCHTL 166 (175)
Q Consensus 129 ~~~~------------------------~~~~~~~~~~~~~---~~~~~~s~~~~~~v~~~f~~l 166 (175)
+... +.......+.+.+ +|++.+|+.+|+|++-+-..+
T Consensus 270 ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f 334 (527)
T COG5258 270 DDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF 334 (527)
T ss_pred HHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHH
Confidence 3110 1110011111122 499999999999987655444
No 339
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.89 E-value=9.7e-09 Score=77.38 Aligned_cols=95 Identities=26% Similarity=0.344 Sum_probs=69.8
Q ss_pred cccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHH----HHHHh
Q 030524 68 QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGE----AKSRE 143 (175)
Q Consensus 68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~----~~~~~ 143 (175)
.++|..+...+.+.++++++|+|+.+.. ..|...+.... .+.|+++|+||+|+.+. ........ ++++.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~-~~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV-GGNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh-CCCCEEEEEEchhhCCC-CCCHHHHHHHHHHHHHH
Confidence 5678888888889999999999997653 22344444443 36799999999998643 33333333 34566
Q ss_pred cCC---eEEEeccCCCCCHHHHHHHHHHH
Q 030524 144 LNV---MFIETSAKAGFNIKLCCHTLNSL 169 (175)
Q Consensus 144 ~~~---~~~~~s~~~~~~v~~~f~~l~~~ 169 (175)
.++ .++.+||++|.|++++|..+.+.
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 676 48999999999999999998654
No 340
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.88 E-value=7.7e-09 Score=69.06 Aligned_cols=56 Identities=27% Similarity=0.335 Sum_probs=36.4
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCC
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 67 (175)
..++|+++|.||+|||||+|++.+...... .+..+.+.....+..+. .+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKV-APIPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceee-CCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence 457899999999999999999998654322 11122222222222222 378999998
No 341
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.87 E-value=9e-09 Score=69.67 Aligned_cols=54 Identities=20% Similarity=0.318 Sum_probs=37.6
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCC
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 67 (175)
.++++++|.||+|||||+|++.+.... ....+ +.+.....+..+. .+.++||||
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~p--g~T~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATP--GVTKSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecCCC--CeEcceEEEEeCC---CEEEEECcC
Confidence 489999999999999999999986543 22222 2333333333332 478999998
No 342
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=1.7e-08 Score=80.10 Aligned_cols=120 Identities=23% Similarity=0.195 Sum_probs=83.0
Q ss_pred CCCCCCCceeEEEECCCCCCHHHHHHHHhcCCC------------C--CcccccceeeEEEEEEEECCeEEEEEEEeCCC
Q 030524 2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKF------------D--NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67 (175)
Q Consensus 2 ~~~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 67 (175)
.+++...-.+|.++.+...|||||.+.|+...- . -+...+.+++.....+..--+.+.+.++|+||
T Consensus 2 ~~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspg 81 (887)
T KOG0467|consen 2 LQKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPG 81 (887)
T ss_pred CCCCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCC
Confidence 456677778999999999999999999876321 0 01122334444444443434567899999999
Q ss_pred cccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 030524 68 QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD 125 (175)
Q Consensus 68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D 125 (175)
|-+|.+.......=+|++++++|+..+--.+...- +++....+...++++||+|
T Consensus 82 hvdf~sevssas~l~d~alvlvdvvegv~~qt~~v----lrq~~~~~~~~~lvinkid 135 (887)
T KOG0467|consen 82 HVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAV----LRQAWIEGLKPILVINKID 135 (887)
T ss_pred ccchhhhhhhhhhhcCCcEEEEeeccccchhHHHH----HHHHHHccCceEEEEehhh
Confidence 99999999888888999999999875432222111 1211224677888999999
No 343
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.79 E-value=8e-09 Score=71.65 Aligned_cols=117 Identities=15% Similarity=0.171 Sum_probs=85.1
Q ss_pred eEEEEEEEeCCCcccccccccccccCCcEEEEEEECC----------ChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCC
Q 030524 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVA----------SRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKT 124 (175)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~ 124 (175)
..+.+.+.|.+|+..-+.-|-+++.+...++|+..++ |...+++...++..+..+-. .+.++|+++||.
T Consensus 197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKk 276 (359)
T KOG0085|consen 197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK 276 (359)
T ss_pred hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechh
Confidence 3456889999999888889999999999888887665 34456666667776666544 789999999999
Q ss_pred CCCCC----------------CCCCHHHHHHHHHhc----C------CeEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524 125 DLVEK----------------RQVSIEEGEAKSREL----N------VMFIETSAKAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 125 D~~~~----------------~~~~~~~~~~~~~~~----~------~~~~~~s~~~~~~v~~~f~~l~~~~~~ 172 (175)
|+.++ .+.+...+++|+-.. | +--..+.|.+.+|+.-+|..+...+..
T Consensus 277 DlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq 350 (359)
T KOG0085|consen 277 DLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ 350 (359)
T ss_pred hhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHH
Confidence 98542 344455556665433 1 112456678899999999988777654
No 344
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.79 E-value=2.7e-08 Score=67.42 Aligned_cols=57 Identities=21% Similarity=0.274 Sum_probs=38.9
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 68 (175)
..++++++|.+|+|||||+|++.+...... ....+.+........+ ..+.++||||-
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 457999999999999999999998765321 2222223333334443 35789999993
No 345
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=7.6e-08 Score=74.74 Aligned_cols=138 Identities=10% Similarity=0.146 Sum_probs=83.7
Q ss_pred CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 030524 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (175)
Q Consensus 5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (175)
..+.++-++++||||.|||||+..|+.+........ .......+.++...+++.++|. +. +.+-...+-+|.
T Consensus 65 d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~-----i~GPiTvvsgK~RRiTflEcp~--Dl-~~miDvaKIaDL 136 (1077)
T COG5192 65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDE-----IRGPITVVSGKTRRITFLECPS--DL-HQMIDVAKIADL 136 (1077)
T ss_pred cCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhc-----cCCceEEeecceeEEEEEeChH--HH-HHHHhHHHhhhe
Confidence 345678888999999999999999887532211111 1112223567778999999993 22 233344677999
Q ss_pred EEEEEECCChhhHHhHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCCCHHHHHHHHHh-------cCCeEEEeccCC
Q 030524 85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQVSIEEGEAKSRE-------LNVMFIETSAKA 155 (175)
Q Consensus 85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nk~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~s~~~ 155 (175)
+++++|.+-. |+.-...+..+...++ .| ++-|+|..|+... +......+.-.++ .|+++|.+|...
T Consensus 137 VlLlIdgnfG--fEMETmEFLnil~~HG--mPrvlgV~ThlDlfk~-~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 137 VLLLIDGNFG--FEMETMEFLNILISHG--MPRVLGVVTHLDLFKN-PSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred eEEEeccccC--ceehHHHHHHHHhhcC--CCceEEEEeecccccC-hHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 9999998644 5443333344454443 44 5556799998532 2222222222221 167888887654
No 346
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.77 E-value=4.9e-08 Score=68.91 Aligned_cols=73 Identities=19% Similarity=0.297 Sum_probs=56.4
Q ss_pred CeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCC----------hhhHHhHHHHHHHHHHhcC-CCCcEEEEEeC
Q 030524 55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVAS----------RQSFLNTSKWIDEVRTERG-SDVIIVLVGNK 123 (175)
Q Consensus 55 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk 123 (175)
-..+.|+.+|.+|+.+-+.-|-.++....++|||...+. ...+++.-.+++.+..+.. ..+.+|+++||
T Consensus 199 Vdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNK 278 (379)
T KOG0099|consen 199 VDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNK 278 (379)
T ss_pred ccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecH
Confidence 344679999999999989999999999999999998773 2344554455555555544 57889999999
Q ss_pred CCCC
Q 030524 124 TDLV 127 (175)
Q Consensus 124 ~D~~ 127 (175)
.|+.
T Consensus 279 qDll 282 (379)
T KOG0099|consen 279 QDLL 282 (379)
T ss_pred HHHH
Confidence 9974
No 347
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.77 E-value=3.5e-08 Score=65.88 Aligned_cols=87 Identities=18% Similarity=0.198 Sum_probs=56.4
Q ss_pred ccCCcEEEEEEECCChhh--HHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCC
Q 030524 79 IRDSSVAVVVYDVASRQS--FLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG 156 (175)
Q Consensus 79 ~~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 156 (175)
++++|++++|.|+.++.. ...+.+++. ....+.|+++++||+|+.++.. .......+...+....+.+|++.+
T Consensus 6 l~~aD~il~VvD~~~p~~~~~~~i~~~l~----~~~~~~p~ilVlNKiDl~~~~~-~~~~~~~~~~~~~~~~~~iSa~~~ 80 (157)
T cd01858 6 IDSSDVVIQVLDARDPMGTRCKHVEEYLK----KEKPHKHLIFVLNKCDLVPTWV-TARWVKILSKEYPTIAFHASINNP 80 (157)
T ss_pred hhhCCEEEEEEECCCCccccCHHHHHHHH----hccCCCCEEEEEEchhcCCHHH-HHHHHHHHhcCCcEEEEEeecccc
Confidence 678999999999988732 222333322 2234689999999999854321 111122222222233578999999
Q ss_pred CCHHHHHHHHHHHH
Q 030524 157 FNIKLCCHTLNSLI 170 (175)
Q Consensus 157 ~~v~~~f~~l~~~~ 170 (175)
.|++++.+.+.+..
T Consensus 81 ~~~~~L~~~l~~~~ 94 (157)
T cd01858 81 FGKGSLIQLLRQFS 94 (157)
T ss_pred ccHHHHHHHHHHHH
Confidence 99999999987653
No 348
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.77 E-value=6.7e-08 Score=82.65 Aligned_cols=112 Identities=22% Similarity=0.256 Sum_probs=71.9
Q ss_pred EEEECCCCCCHHHHHHHHhcCCCCCcc----ccc--ceeeEEEEEEEECCeEEEEEEEeCCCc----c----cccccccc
Q 030524 12 LVFLGDQSVGKTSIITRFMYDKFDNTY----QAT--IGIDFLSKTMYLEDRTVRLQLWDTAGQ----E----RFRSLIPS 77 (175)
Q Consensus 12 i~l~G~~~~GKSsli~~l~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~i~D~~G~----~----~~~~~~~~ 77 (175)
.+++|++|+||||++..- +..++-.. ..+ .+-+.. ..+.+.+ ...++|++|. + .....|..
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~-c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRN-CDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcc-cceEecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence 478999999999999874 43332111 111 111111 2222333 3569999992 1 22234554
Q ss_pred ccc---------CCcEEEEEEECCC-----hh----hHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 030524 78 YIR---------DSSVAVVVYDVAS-----RQ----SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (175)
Q Consensus 78 ~~~---------~~d~~i~v~d~~~-----~~----~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~ 128 (175)
++. -.|++|+++|+.+ ++ .-+.++..+.++....+...||+++.||+|+..
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 432 4799999999873 21 123577788888888889999999999999864
No 349
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.77 E-value=1.3e-08 Score=72.31 Aligned_cols=157 Identities=15% Similarity=0.087 Sum_probs=90.7
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccc-cceeeEEEEEEEECCeEEEEEEEeCCCc----------cccccc
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA-TIGIDFLSKTMYLEDRTVRLQLWDTAGQ----------ERFRSL 74 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~ 74 (175)
+..+.+++++|-+|+|||||+|.++.......... ..+.+.......+ .-.+.+.|.||. .++..+
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v---~~~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV---GKSWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec---cceEEEEecCCcccccCCccCcchHhHh
Confidence 45678999999999999999999988654433222 2322222222222 236789999992 234445
Q ss_pred ccccccCCc---EEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC------CC-----HHHHHHH
Q 030524 75 IPSYIRDSS---VAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ------VS-----IEEGEAK 140 (175)
Q Consensus 75 ~~~~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~------~~-----~~~~~~~ 140 (175)
...|+.+-+ .++++.|++-+ ++.......++.. ..++|..+|.||+|..-... .. .....+.
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~g--e~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~ 285 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVP--IQPTDNPEIAWLG--ENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRG 285 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCC--CCCCChHHHHHHh--hcCCCeEEeeehhhhhhhccccccCccccceeehhhcccc
Confidence 566665543 34555666533 2332222122222 25899999999999632111 00 1111111
Q ss_pred HHhcCCeEEEeccCCCCCHHHHHHHHHHH
Q 030524 141 SRELNVMFIETSAKAGFNIKLCCHTLNSL 169 (175)
Q Consensus 141 ~~~~~~~~~~~s~~~~~~v~~~f~~l~~~ 169 (175)
......+++.+|+.++.|.+++..-+.+.
T Consensus 286 ~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 286 VFLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred ceeccCCceeeecccccCceeeeeehhhh
Confidence 11223478889999999999887665543
No 350
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.76 E-value=2e-08 Score=69.20 Aligned_cols=56 Identities=21% Similarity=0.316 Sum_probs=37.0
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCC-------cccccceeeEEEEEEEECCeEEEEEEEeCCC
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDN-------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 67 (175)
..+++++|.+|+|||||+|.|++..... ......+.+........+. .+.++||||
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence 4689999999999999999999854321 1111122333334444433 479999999
No 351
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.75 E-value=4.5e-08 Score=65.25 Aligned_cols=56 Identities=23% Similarity=0.269 Sum_probs=38.4
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCC
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 67 (175)
...+++++|.+|+||||++|++.++.. ....++.+.+........++ .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 457899999999999999999997542 23334444333333222333 589999998
No 352
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.74 E-value=5.7e-08 Score=71.14 Aligned_cols=56 Identities=23% Similarity=0.349 Sum_probs=39.2
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 68 (175)
..++++++|.||+|||||+|+|.+.... ....+. .+.....+..+. .+.++||||-
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g--~T~~~~~~~~~~---~~~l~DtPGi 176 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPG--VTKAQQWIKLGK---GLELLDTPGI 176 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCC--eEEEEEEEEeCC---cEEEEECCCc
Confidence 4589999999999999999999987643 222332 233333344433 4789999994
No 353
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=4.8e-08 Score=72.27 Aligned_cols=155 Identities=18% Similarity=0.292 Sum_probs=93.5
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccc-----------------------cceeeEEEEEEE----------EC
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA-----------------------TIGIDFLSKTMY----------LE 54 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~-----------------------~~~~~~~~~~~~----------~~ 54 (175)
..++++++|...+|||||+.-|..+........ ..+++.....+. ++
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 468999999999999999998876654322111 111111111111 11
Q ss_pred CeEEEEEEEeCCCccccccccccccc--CCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC---
Q 030524 55 DRTVRLQLWDTAGQERFRSLIPSYIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK--- 129 (175)
Q Consensus 55 ~~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~--- 129 (175)
...-.+.++|.+|+.+|....-+-+. ..|...+|+++...-.. ..++.+-.+. .-++|+.++.+|+|+...
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~-tTrEHLgl~~---AL~iPfFvlvtK~Dl~~~~~~ 321 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITW-TTREHLGLIA---ALNIPFFVLVTKMDLVDRQGL 321 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcc-ccHHHHHHHH---HhCCCeEEEEEeeccccchhH
Confidence 22235889999999998875543333 35788888887654221 1233332222 258999999999999643
Q ss_pred ---------------------CCCCHHHHHHHHHh----cCCeEEEeccCCCCCHHHHHHHH
Q 030524 130 ---------------------RQVSIEEGEAKSRE----LNVMFIETSAKAGFNIKLCCHTL 166 (175)
Q Consensus 130 ---------------------~~~~~~~~~~~~~~----~~~~~~~~s~~~~~~v~~~f~~l 166 (175)
+.-+.+++-..+.+ .-.|++.+|+.+|+|++-+-..|
T Consensus 322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL 383 (591)
T KOG1143|consen 322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL 383 (591)
T ss_pred HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence 11123333222222 22489999999999987655443
No 354
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.74 E-value=3.3e-07 Score=64.49 Aligned_cols=159 Identities=16% Similarity=0.155 Sum_probs=102.1
Q ss_pred eeEEEECCCCC--CHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524 10 YKLVFLGDQSV--GKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (175)
Q Consensus 10 ~~i~l~G~~~~--GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (175)
..++++|..|+ ||.+|+.+|..-.+.....+.....++.+++........+.++=.+--+++.--......-..++++
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~vm 84 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFVM 84 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEEE
Confidence 46788999999 9999999998877766655555556666554333333334444333212222222222334468899
Q ss_pred EEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC--------------------------------------
Q 030524 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK-------------------------------------- 129 (175)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~-------------------------------------- 129 (175)
+||++...++..++.|+.....+.- -..+.++||.|.++.
T Consensus 85 vfdlse~s~l~alqdwl~htdinsf--dillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegssl 162 (418)
T KOG4273|consen 85 VFDLSEKSGLDALQDWLPHTDINSF--DILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGSSL 162 (418)
T ss_pred EEeccchhhhHHHHhhccccccccc--hhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccccccccc
Confidence 9999999999999999886654321 123455799996531
Q ss_pred ------CCCCHHHHHHHHHhcCCeEEEeccCCC------------CCHHHHHHHHHHHH
Q 030524 130 ------RQVSIEEGEAKSRELNVMFIETSAKAG------------FNIKLCCHTLNSLI 170 (175)
Q Consensus 130 ------~~~~~~~~~~~~~~~~~~~~~~s~~~~------------~~v~~~f~~l~~~~ 170 (175)
.-........|+.++|+.|++.++.+. .|++.+|..|...+
T Consensus 163 lgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahm 221 (418)
T KOG4273|consen 163 LGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHM 221 (418)
T ss_pred cccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhcc
Confidence 001234456778888999999988543 36888887765443
No 355
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.72 E-value=5.5e-08 Score=70.85 Aligned_cols=57 Identities=26% Similarity=0.352 Sum_probs=38.7
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 68 (175)
..++++++|.||+|||||+|+|.+....... ...+.+.....+..+. .+.++||||-
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVG-NRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccC-CCCCeecceEEEEeCC---CEEEEECCCc
Confidence 4589999999999999999999986543221 1122233333344433 4789999995
No 356
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.69 E-value=5.6e-08 Score=72.16 Aligned_cols=56 Identities=27% Similarity=0.369 Sum_probs=42.2
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCC
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 67 (175)
..++++++|-||+|||||||+|++..... ..+..+.+.....+.++.. +.++||||
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~-~s~~PG~Tk~~q~i~~~~~---i~LlDtPG 186 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAK-TSNRPGTTKGIQWIKLDDG---IYLLDTPG 186 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhccccee-eCCCCceecceEEEEcCCC---eEEecCCC
Confidence 45889999999999999999999987532 2222355666666666553 79999999
No 357
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.67 E-value=1.8e-07 Score=62.34 Aligned_cols=83 Identities=19% Similarity=0.100 Sum_probs=54.3
Q ss_pred cEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHH
Q 030524 83 SVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLC 162 (175)
Q Consensus 83 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~ 162 (175)
|++++|+|+.++.+... .++.. ......++|+++++||+|+.+..+. ......+....+..++.+|++++.|+.++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence 78999999988765443 22221 1112257999999999998532210 01111232333567899999999999999
Q ss_pred HHHHHHH
Q 030524 163 CHTLNSL 169 (175)
Q Consensus 163 f~~l~~~ 169 (175)
.+.+.+.
T Consensus 77 ~~~i~~~ 83 (155)
T cd01849 77 ESAFTKQ 83 (155)
T ss_pred HHHHHHH
Confidence 9988764
No 358
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=1.1e-07 Score=70.25 Aligned_cols=121 Identities=21% Similarity=0.294 Sum_probs=74.0
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCccccc-ceeeEEEEEEE------ECC-------------------------
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQAT-IGIDFLSKTMY------LED------------------------- 55 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~-~~~~~~~~~~~------~~~------------------------- 55 (175)
.+.-|+++|+-..||||+++-|+.+.++.-.... .+.+++..... ++|
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 4677999999999999999999998876433221 11222222111 011
Q ss_pred -------e-EEEEEEEeCCCc--c---------cccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCc
Q 030524 56 -------R-TVRLQLWDTAGQ--E---------RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI 116 (175)
Q Consensus 56 -------~-~~~~~i~D~~G~--~---------~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (175)
. --.+.++||||- . .|...++=+...+|.+|++||...-+--++..+-+..+ .+..-.
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aL---kG~Edk 213 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDAL---KGHEDK 213 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHh---hCCcce
Confidence 1 125899999992 1 23334555678999999999975432222333333333 334556
Q ss_pred EEEEEeCCCCCCCCC
Q 030524 117 IVLVGNKTDLVEKRQ 131 (175)
Q Consensus 117 ~iiv~nk~D~~~~~~ 131 (175)
+-+|+||+|.++..+
T Consensus 214 iRVVLNKADqVdtqq 228 (532)
T KOG1954|consen 214 IRVVLNKADQVDTQQ 228 (532)
T ss_pred eEEEeccccccCHHH
Confidence 777789999765433
No 359
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=5.9e-07 Score=70.98 Aligned_cols=144 Identities=24% Similarity=0.302 Sum_probs=83.7
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCccc-ccc----------e------------------e---------eE---
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQ-ATI----------G------------------I---------DF--- 46 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~-~~~----------~------------------~---------~~--- 46 (175)
.+.||++.|..++||||++|+++..+.-++.. ++. | + +.
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 46899999999999999999998765432211 110 0 0 00
Q ss_pred --EEEEEEECCe-----EEEEEEEeCCCcc---cccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCc
Q 030524 47 --LSKTMYLEDR-----TVRLQLWDTAGQE---RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI 116 (175)
Q Consensus 47 --~~~~~~~~~~-----~~~~~i~D~~G~~---~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (175)
..-.+..+.+ .-.+.+.|.||-+ +...-...+...+|++|||.++.+..+..+. .++..... .+.-
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek-~Ff~~vs~---~Kpn 263 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK-QFFHKVSE---EKPN 263 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH-HHHHHhhc---cCCc
Confidence 0000111111 1157889999943 3444556667899999999998776444332 22222221 2233
Q ss_pred EEEEEeCCCCCCCCCCCHHHHHHHHHhcCC--------eEEEeccCC
Q 030524 117 IVLVGNKTDLVEKRQVSIEEGEAKSRELNV--------MFIETSAKA 155 (175)
Q Consensus 117 ~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~--------~~~~~s~~~ 155 (175)
+.++.||+|.....+..........+++.+ .++.||++.
T Consensus 264 iFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 264 IFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred EEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 455568989876555555555555555542 478888553
No 360
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.61 E-value=6.4e-08 Score=64.33 Aligned_cols=59 Identities=27% Similarity=0.322 Sum_probs=33.2
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCc-cccc---ce--eeEEEEEEEECCeEEEEEEEeCCCcccc
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNT-YQAT---IG--IDFLSKTMYLEDRTVRLQLWDTAGQERF 71 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~-~~~~---~~--~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 71 (175)
-.++++|++|||||||+|.|+....... ..+. .+ .+.....+..++. ..++||||...+
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCcc
Confidence 4688999999999999999998632211 1110 00 1112223334332 378999995543
No 361
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.61 E-value=1.1e-07 Score=64.41 Aligned_cols=97 Identities=16% Similarity=0.119 Sum_probs=62.1
Q ss_pred CCcc-cccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhc
Q 030524 66 AGQE-RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL 144 (175)
Q Consensus 66 ~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~ 144 (175)
|||. +........+.++|++++|+|++++..-... . +.... .+.|+++++||+|+.++.. .....+.....
T Consensus 3 ~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~----i~~~~-~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~ 74 (171)
T cd01856 3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNP-L----LEKIL-GNKPRIIVLNKADLADPKK--TKKWLKYFESK 74 (171)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCCh-h----hHhHh-cCCCEEEEEehhhcCChHH--HHHHHHHHHhc
Confidence 4542 3334456678899999999999876432221 1 11111 3578999999999853211 11111222233
Q ss_pred CCeEEEeccCCCCCHHHHHHHHHHHH
Q 030524 145 NVMFIETSAKAGFNIKLCCHTLNSLI 170 (175)
Q Consensus 145 ~~~~~~~s~~~~~~v~~~f~~l~~~~ 170 (175)
+..++.+|++++.|++++...+.+.+
T Consensus 75 ~~~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 75 GEKVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHH
Confidence 45789999999999999999887764
No 362
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.60 E-value=2.1e-07 Score=62.00 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=36.8
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCC
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 67 (175)
...+++++|.+|+|||||+|.+.+.... ....+..+.+.. ....+ ..+.++||||
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~--~~~~~---~~~~liDtPG 154 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQ--EVKLD---NKIKLLDTPG 154 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceE--EEEec---CCEEEEECCC
Confidence 4688999999999999999999986532 222222222222 22232 2489999998
No 363
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=7.4e-08 Score=72.24 Aligned_cols=116 Identities=22% Similarity=0.283 Sum_probs=90.7
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcC--------CCCCc--------ccccceeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYD--------KFDNT--------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~--------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 71 (175)
+-.+|.++.+-.+||||...+++.- .+... .....+++.++..+..+=++.++.++||||+-+|
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 3468999999999999999998752 11111 1224567788888878777888999999999999
Q ss_pred cccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524 72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (175)
Q Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~ 127 (175)
+-....+++--|+++.|||.+..-.-+.+..|.+. .+-++|...++||+|..
T Consensus 116 ~leverclrvldgavav~dasagve~qtltvwrqa----dk~~ip~~~finkmdk~ 167 (753)
T KOG0464|consen 116 RLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA----DKFKIPAHCFINKMDKL 167 (753)
T ss_pred EEEHHHHHHHhcCeEEEEeccCCcccceeeeehhc----cccCCchhhhhhhhhhh
Confidence 99999999999999999999977555556666442 33578999999999964
No 364
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.58 E-value=2.3e-07 Score=69.53 Aligned_cols=83 Identities=14% Similarity=0.051 Sum_probs=54.2
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCC-CCcccccceeeEEEEEEEECCe---------------EEEEEEEeCCCccccc-
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQERFR- 72 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~- 72 (175)
++++++|.|++|||||.+.+.+... .....+..+.+.....+.+.+. ...+.+.|.||-..-.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999998776 4322232222333333333221 2367899999943211
Q ss_pred ------ccccccccCCcEEEEEEECC
Q 030524 73 ------SLIPSYIRDSSVAVVVYDVA 92 (175)
Q Consensus 73 ------~~~~~~~~~~d~~i~v~d~~ 92 (175)
...-..++++|+++.|+++.
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 12233467899999999974
No 365
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.57 E-value=2.2e-07 Score=60.92 Aligned_cols=76 Identities=18% Similarity=0.208 Sum_probs=52.2
Q ss_pred ccccCCcEEEEEEECCChhhHH--hHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccC
Q 030524 77 SYIRDSSVAVVVYDVASRQSFL--NTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK 154 (175)
Q Consensus 77 ~~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 154 (175)
..+.++|++++|+|+.++.+.. .+.+++... ..+.|+++++||+|+.++.. .....+.....+..++.+|+.
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa~ 80 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----DPRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSAL 80 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----cCCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEec
Confidence 3467899999999998876543 233443322 24689999999999854322 223344555567889999999
Q ss_pred CCCC
Q 030524 155 AGFN 158 (175)
Q Consensus 155 ~~~~ 158 (175)
++.+
T Consensus 81 ~~~~ 84 (141)
T cd01857 81 KENA 84 (141)
T ss_pred CCCc
Confidence 8764
No 366
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.56 E-value=1e-06 Score=65.29 Aligned_cols=143 Identities=17% Similarity=0.170 Sum_probs=79.3
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCC----------ccc-----------ccceeeEEEEEEE-------------E
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDN----------TYQ-----------ATIGIDFLSKTMY-------------L 53 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~----------~~~-----------~~~~~~~~~~~~~-------------~ 53 (175)
..-.|+++|++|+||||++..+...-... .+. ...++.+...... .
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 35678899999999999998875421100 000 0011122111000 0
Q ss_pred CCeEEEEEEEeCCCcccccc----ccccc--------ccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEE
Q 030524 54 EDRTVRLQLWDTAGQERFRS----LIPSY--------IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVG 121 (175)
Q Consensus 54 ~~~~~~~~i~D~~G~~~~~~----~~~~~--------~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~ 121 (175)
....+.+.++||||...... ....+ -...+..++|.|++.. .+.+.. ...+.... -+.-+|+
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~-a~~f~~~~---~~~giIl 266 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQ-AKAFHEAV---GLTGIIL 266 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHH-HHHHHhhC---CCCEEEE
Confidence 12345799999999543221 11111 1246788999998854 222222 12222211 2335677
Q ss_pred eCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHH
Q 030524 122 NKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLC 162 (175)
Q Consensus 122 nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~ 162 (175)
||.|.... .-.+...+...++|+..++ .|++++++
T Consensus 267 TKlD~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl 301 (318)
T PRK10416 267 TKLDGTAK----GGVVFAIADELGIPIKFIG--VGEGIDDL 301 (318)
T ss_pred ECCCCCCC----ccHHHHHHHHHCCCEEEEe--CCCChhhC
Confidence 99995322 2355566677799998887 78887654
No 367
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.55 E-value=2.7e-06 Score=64.30 Aligned_cols=154 Identities=19% Similarity=0.216 Sum_probs=89.4
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCCc--------------ccccce----------eeEEEEEEEE-CCeEEEEEEE
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNT--------------YQATIG----------IDFLSKTMYL-EDRTVRLQLW 63 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~--------------~~~~~~----------~~~~~~~~~~-~~~~~~~~i~ 63 (175)
.+=|.++||..+|||||+.||...-+-++ .++..+ +......+.+ ++-.+++++.
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi 96 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI 96 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence 46689999999999999999865321110 111111 1112233444 4667899999
Q ss_pred eCCCcc--------ccc--c-ccccc------------------cc-CC-cEEEEEEECC----ChhhHHhH-HHHHHHH
Q 030524 64 DTAGQE--------RFR--S-LIPSY------------------IR-DS-SVAVVVYDVA----SRQSFLNT-SKWIDEV 107 (175)
Q Consensus 64 D~~G~~--------~~~--~-~~~~~------------------~~-~~-d~~i~v~d~~----~~~~~~~~-~~~~~~~ 107 (175)
||.|.- +-. . ....+ +. ++ =++++.=|-+ .++.|.+. .+-+.++
T Consensus 97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL 176 (492)
T PF09547_consen 97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL 176 (492)
T ss_pred eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence 999811 000 0 00111 11 22 2555554433 24444443 3344444
Q ss_pred HHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCC--CCCHHHHHHHHH
Q 030524 108 RTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA--GFNIKLCCHTLN 167 (175)
Q Consensus 108 ~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~v~~~f~~l~ 167 (175)
.. -++|+++++|-.+- ..+.......++..+++++++.+++.+ .+.+..++..++
T Consensus 177 k~---igKPFvillNs~~P--~s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vL 233 (492)
T PF09547_consen 177 KE---IGKPFVILLNSTKP--YSEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVL 233 (492)
T ss_pred HH---hCCCEEEEEeCCCC--CCHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHH
Confidence 43 47999999998873 445556777888889999988887654 445555555443
No 368
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.54 E-value=1.3e-07 Score=70.20 Aligned_cols=153 Identities=15% Similarity=0.205 Sum_probs=86.7
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCC------------------cccccceeeEEEE-------------------
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDN------------------TYQATIGIDFLSK------------------- 49 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~------------------~~~~~~~~~~~~~------------------- 49 (175)
-...+++++|+..+|||||+.-|.++.... ...++.+.++...
T Consensus 131 F~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdW 210 (641)
T KOG0463|consen 131 FIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDW 210 (641)
T ss_pred ceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccc
Confidence 457899999999999999998876654322 1122222222111
Q ss_pred EEEECCeEEEEEEEeCCCcccccccccccc--cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524 50 TMYLEDRTVRLQLWDTAGQERFRSLIPSYI--RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (175)
Q Consensus 50 ~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~ 127 (175)
...+++..--+.|+|.+||++|....-.-. .-.|...+++-++.. +-.+ ..+++.....-.+|+.+|.+|+|++
T Consensus 211 vkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG--IiGm--TKEHLgLALaL~VPVfvVVTKIDMC 286 (641)
T KOG0463|consen 211 VKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG--IIGM--TKEHLGLALALHVPVFVVVTKIDMC 286 (641)
T ss_pred eeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc--ceec--cHHhhhhhhhhcCcEEEEEEeeccC
Confidence 111223333578999999998876432211 124666666655432 1111 1122322333578888888999886
Q ss_pred CCCCCC--HHHHHHHH--------------------------HhcCCeEEEeccCCCCCHHHHH
Q 030524 128 EKRQVS--IEEGEAKS--------------------------RELNVMFIETSAKAGFNIKLCC 163 (175)
Q Consensus 128 ~~~~~~--~~~~~~~~--------------------------~~~~~~~~~~s~~~~~~v~~~f 163 (175)
...... .....++. .+.-||+|.+|-.+|+++.-+.
T Consensus 287 PANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLk 350 (641)
T KOG0463|consen 287 PANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLK 350 (641)
T ss_pred cHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHH
Confidence 532211 11112222 2233689999999999987543
No 369
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=4.2e-07 Score=70.95 Aligned_cols=116 Identities=22% Similarity=0.266 Sum_probs=81.5
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCC-C---------------cccccceeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-N---------------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~-~---------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 71 (175)
+-.+|.+.-+-.+||||+-++.+...-- . +.....+++.......+.-..+.+.++|||||-+|
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 3467888999999999999997753211 0 11112344444444333333678999999999999
Q ss_pred cccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524 72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (175)
Q Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~ 127 (175)
.-.....++--|+.+++++...+-.-+....|.+. .+ -++|.+.++||+|..
T Consensus 118 T~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~-~r---y~vP~i~FiNKmDRm 169 (721)
T KOG0465|consen 118 TFEVERALRVLDGAVLVLDAVAGVESQTETVWRQM-KR---YNVPRICFINKMDRM 169 (721)
T ss_pred EEEehhhhhhccCeEEEEEcccceehhhHHHHHHH-Hh---cCCCeEEEEehhhhc
Confidence 98888889999999999998766444444455432 22 379999999999963
No 370
>PRK14974 cell division protein FtsY; Provisional
Probab=98.52 E-value=8.5e-07 Score=66.05 Aligned_cols=95 Identities=13% Similarity=0.070 Sum_probs=55.4
Q ss_pred EEEEEEeCCCcccccc----ccccc--ccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 030524 58 VRLQLWDTAGQERFRS----LIPSY--IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ 131 (175)
Q Consensus 58 ~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~ 131 (175)
+.+.++||+|...... ..+.+ ..+.|..++|.|+..... .+ .....+.... ++ --+++||.|....
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d--~~-~~a~~f~~~~--~~-~giIlTKlD~~~~-- 294 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND--AV-EQAREFNEAV--GI-DGVILTKVDADAK-- 294 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh--HH-HHHHHHHhcC--CC-CEEEEeeecCCCC--
Confidence 4689999999543221 11222 236789999999875432 11 1112222211 22 3566799996332
Q ss_pred CCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHH
Q 030524 132 VSIEEGEAKSRELNVMFIETSAKAGFNIKLCCH 164 (175)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~ 164 (175)
.-.+...+...+.|+..++ +|++++++-.
T Consensus 295 --~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 295 --GGAALSIAYVIGKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred --ccHHHHHHHHHCcCEEEEe--CCCChhhccc
Confidence 2245555666788888886 7888876543
No 371
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.52 E-value=4.6e-07 Score=66.04 Aligned_cols=98 Identities=23% Similarity=0.232 Sum_probs=63.6
Q ss_pred CCcc-cccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhc
Q 030524 66 AGQE-RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL 144 (175)
Q Consensus 66 ~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~ 144 (175)
|||. +........+.++|++++|+|+.++.+.+. .++.... .+.|+++|+||+|+.+... .....+.....
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~ 76 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR----GNKPRLIVLNKADLADPAV--TKQWLKYFEEK 76 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH----CCCCEEEEEEccccCCHHH--HHHHHHHHHHc
Confidence 5653 222345566889999999999987644332 1112222 2579999999999853211 11111122334
Q ss_pred CCeEEEeccCCCCCHHHHHHHHHHHHh
Q 030524 145 NVMFIETSAKAGFNIKLCCHTLNSLIT 171 (175)
Q Consensus 145 ~~~~~~~s~~~~~~v~~~f~~l~~~~~ 171 (175)
+.+++.+|++++.|+.++.+.+.+.+.
T Consensus 77 ~~~vi~iSa~~~~gi~~L~~~i~~~~~ 103 (276)
T TIGR03596 77 GIKALAINAKKGKGVKKIIKAAKKLLK 103 (276)
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 568899999999999999888877654
No 372
>PRK12288 GTPase RsgA; Reviewed
Probab=98.51 E-value=2.8e-07 Score=69.05 Aligned_cols=59 Identities=20% Similarity=0.295 Sum_probs=35.1
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCCCC-ccccc---ce--eeEEEEEEEECCeEEEEEEEeCCCccccc
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKFDN-TYQAT---IG--IDFLSKTMYLEDRTVRLQLWDTAGQERFR 72 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~~~-~~~~~---~~--~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 72 (175)
.++|+|.+|+|||||+|+|++..... ...+. .+ .+.....+.+++. ..++||||-.++.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence 37899999999999999999764321 11111 01 1222222333332 2599999965443
No 373
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.51 E-value=5.8e-07 Score=65.73 Aligned_cols=87 Identities=22% Similarity=0.171 Sum_probs=60.6
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECC---------------eEEEEEEEeCCCccc
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED---------------RTVRLQLWDTAGQER 70 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~D~~G~~~ 70 (175)
..+.++|.++|.|+|||||+.|.|......+...|-.+++.....+.+.. -...+.++|++|.-.
T Consensus 17 ~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 17 DGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred CCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 34679999999999999999999999877666666665665555544422 134689999998432
Q ss_pred ccc----c---ccccccCCcEEEEEEECC
Q 030524 71 FRS----L---IPSYIRDSSVAVVVYDVA 92 (175)
Q Consensus 71 ~~~----~---~~~~~~~~d~~i~v~d~~ 92 (175)
-.+ + .-.-++.+|+++=|.++.
T Consensus 97 GAs~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 97 GASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred CcccCcCchHHHHHhhhhccceeEEEEec
Confidence 211 1 122356789998887665
No 374
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.51 E-value=1.3e-05 Score=52.95 Aligned_cols=111 Identities=14% Similarity=0.248 Sum_probs=63.6
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCC-Cccc--------------cc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA-GQER--------------FR 72 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~-G~~~--------------~~ 72 (175)
..++|++.|+|||||||++.++...-.... .... -+.+.++.-++...-|.+.|.. |... |.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g-~kvg--Gf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~ 80 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKG-YKVG--GFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG 80 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcC-ceee--eEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence 468999999999999999998764321211 1111 3455566667777778888887 4221 11
Q ss_pred c-----------cccccccCCcEEEEEEECCChhhHHh-HHHHHHHHHHhcCCCCcEEEEEeCCC
Q 030524 73 S-----------LIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTD 125 (175)
Q Consensus 73 ~-----------~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nk~D 125 (175)
. ..+..++.+|++|+ |=-- .++. .+.+.+.+......+.|++..+.+.+
T Consensus 81 V~v~~le~i~~~al~rA~~~aDvIII--DEIG--pMElks~~f~~~ve~vl~~~kpliatlHrrs 141 (179)
T COG1618 81 VNVEGLEEIAIPALRRALEEADVIII--DEIG--PMELKSKKFREAVEEVLKSGKPLIATLHRRS 141 (179)
T ss_pred eeHHHHHHHhHHHHHHHhhcCCEEEE--eccc--chhhccHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 0 11122334565553 4221 2222 34444555555556788888776665
No 375
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.50 E-value=9.6e-07 Score=62.38 Aligned_cols=85 Identities=16% Similarity=0.094 Sum_probs=48.9
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcC--CCCCccc-ccceeeEEEEEEEEC-CeEEEEEEEeCCCcccccc------cccc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYD--KFDNTYQ-ATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRS------LIPS 77 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~--~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~------~~~~ 77 (175)
+-.-|.++|++++|||+|+|+|++. .+..... ...+........... +....+.++||+|...... ....
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~ 85 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLF 85 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHH
Confidence 4467889999999999999999998 4432211 111111111111111 2345799999999543222 1111
Q ss_pred ccc--CCcEEEEEEECC
Q 030524 78 YIR--DSSVAVVVYDVA 92 (175)
Q Consensus 78 ~~~--~~d~~i~v~d~~ 92 (175)
.+. -++++|+..+..
T Consensus 86 ~l~~llss~~i~n~~~~ 102 (224)
T cd01851 86 ALATLLSSVLIYNSWET 102 (224)
T ss_pred HHHHHHhCEEEEeccCc
Confidence 122 378888876655
No 376
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.50 E-value=5.3e-07 Score=64.36 Aligned_cols=116 Identities=16% Similarity=0.294 Sum_probs=72.8
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCC----cccccceeeEEEEEEEECCeEEEEEEEeCCCccc-------ccc----
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDN----TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRS---- 73 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~---- 73 (175)
.++|+-+|.+|-|||||++.|....+.. ...+........+...-.|-.+++.+.||.|..+ |..
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdy 121 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDY 121 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHH
Confidence 5899999999999999999999876543 3344444444555555567788999999999321 111
Q ss_pred ---cccccc---------------cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 030524 74 ---LIPSYI---------------RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (175)
Q Consensus 74 ---~~~~~~---------------~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~ 128 (175)
....|+ ...++++|.+..+.. ++..+.- .........+-+|.++.|.|...
T Consensus 122 idaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH-~LKslDL---vtmk~LdskVNIIPvIAKaDtis 190 (406)
T KOG3859|consen 122 IDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGH-SLKSLDL---VTMKKLDSKVNIIPVIAKADTIS 190 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCc-chhHHHH---HHHHHHhhhhhhHHHHHHhhhhh
Confidence 111111 256888888887643 3333222 12222224566666778888643
No 377
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.49 E-value=9.7e-07 Score=59.01 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 030524 12 LVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 12 i~l~G~~~~GKSsli~~l~~~ 32 (175)
+++.|+.|+|||||+++++..
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 678999999999999998865
No 378
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.48 E-value=2.5e-06 Score=66.31 Aligned_cols=82 Identities=18% Similarity=0.217 Sum_probs=56.2
Q ss_pred EEEEEeCCC-------------cccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhc-CCCCcEEEEEeCC
Q 030524 59 RLQLWDTAG-------------QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKT 124 (175)
Q Consensus 59 ~~~i~D~~G-------------~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nk~ 124 (175)
...+.|.|| .+....+..+|..|.+++|+|+--. |.+.-+.....+-... +.+...|+|+||.
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG---SVDAERSnVTDLVsq~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG---SVDAERSIVTDLVSQMDPHGRRTIFVLTKV 489 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC---CcchhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence 578899999 2344456788899999999998422 2233233333333333 2567789999999
Q ss_pred CCCCCCCCCHHHHHHHHHh
Q 030524 125 DLVEKRQVSIEEGEAKSRE 143 (175)
Q Consensus 125 D~~~~~~~~~~~~~~~~~~ 143 (175)
|+.+..-.+.+.+++....
T Consensus 490 DlAEknlA~PdRI~kIleG 508 (980)
T KOG0447|consen 490 DLAEKNVASPSRIQQIIEG 508 (980)
T ss_pred chhhhccCCHHHHHHHHhc
Confidence 9988878888888777653
No 379
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.47 E-value=9.8e-07 Score=64.07 Aligned_cols=95 Identities=15% Similarity=0.025 Sum_probs=55.9
Q ss_pred EEEEEEEeCCCcccccccc----cc---c-----ccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCC
Q 030524 57 TVRLQLWDTAGQERFRSLI----PS---Y-----IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124 (175)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~----~~---~-----~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~ 124 (175)
.+.+.++||||........ .. . -..+|..++|.|++.. .+.+. ....+.... -+--+|+||.
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~-~~~~f~~~~---~~~g~IlTKl 227 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALE-QAKVFNEAV---GLTGIILTKL 227 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHH-HHHHHHhhC---CCCEEEEEcc
Confidence 3678999999964322211 11 1 1238999999999743 22222 223333222 1346677999
Q ss_pred CCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHH
Q 030524 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCC 163 (175)
Q Consensus 125 D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f 163 (175)
|.... .-.....+...++|+..++ +|++++++-
T Consensus 228 De~~~----~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 228 DGTAK----GGIILSIAYELKLPIKFIG--VGEKIDDLA 260 (272)
T ss_pred CCCCC----ccHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence 96332 2245555666788888887 777776653
No 380
>PRK01889 GTPase RsgA; Reviewed
Probab=98.44 E-value=1.3e-06 Score=65.85 Aligned_cols=83 Identities=17% Similarity=0.169 Sum_probs=57.6
Q ss_pred ccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-hcCCeEEEeccCCCC
Q 030524 79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-ELNVMFIETSAKAGF 157 (175)
Q Consensus 79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~ 157 (175)
..|+|.+++|.++..+.....+.+++..... .+++.++|+||+|+.+... .....+.. ..+++++.+|++++.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~---~~i~piIVLNK~DL~~~~~---~~~~~~~~~~~g~~Vi~vSa~~g~ 183 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE---SGAEPVIVLTKADLCEDAE---EKIAEVEALAPGVPVLAVSALDGE 183 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH---cCCCEEEEEEChhcCCCHH---HHHHHHHHhCCCCcEEEEECCCCc
Confidence 5789999999999644444445555544443 4678888999999965311 11222222 356799999999999
Q ss_pred CHHHHHHHHH
Q 030524 158 NIKLCCHTLN 167 (175)
Q Consensus 158 ~v~~~f~~l~ 167 (175)
|++++..++.
T Consensus 184 gl~~L~~~L~ 193 (356)
T PRK01889 184 GLDVLAAWLS 193 (356)
T ss_pred cHHHHHHHhh
Confidence 9999888874
No 381
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=6.8e-08 Score=69.68 Aligned_cols=163 Identities=18% Similarity=0.189 Sum_probs=97.0
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCC---CCCccccccee-------------------------------e-EEEEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDK---FDNTYQATIGI-------------------------------D-FLSKTM 51 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~-------------------------------~-~~~~~~ 51 (175)
.-.++|.-+|+.-.||||++..+.+-. +..+.....++ + ..+...
T Consensus 36 QATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~ 115 (466)
T KOG0466|consen 36 QATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRP 115 (466)
T ss_pred eeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccC
Confidence 457999999999999999998765421 00000000000 0 000000
Q ss_pred EECC---eEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 030524 52 YLED---RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (175)
Q Consensus 52 ~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~ 128 (175)
...+ -...+.|.|+|||+-....+-.-..-.|+.++++..+..-.-....+++-.+... .=..++++-||.|+..
T Consensus 116 g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM--~LkhiiilQNKiDli~ 193 (466)
T KOG0466|consen 116 GCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM--KLKHIIILQNKIDLIK 193 (466)
T ss_pred CCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh--hhceEEEEechhhhhh
Confidence 1111 1245789999999866554444444568999998876432111222222222222 1245788889999976
Q ss_pred CCCCCH--HHHHHHHHhc---CCeEEEeccCCCCCHHHHHHHHHHHHh
Q 030524 129 KRQVSI--EEGEAKSREL---NVMFIETSAKAGFNIKLCCHTLNSLIT 171 (175)
Q Consensus 129 ~~~~~~--~~~~~~~~~~---~~~~~~~s~~~~~~v~~~f~~l~~~~~ 171 (175)
+.+... +....|...- +.|++++||.-+.|++-+.+++..++-
T Consensus 194 e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 194 ESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred HHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 544332 2334444433 569999999999999999999888764
No 382
>PRK12289 GTPase RsgA; Reviewed
Probab=98.41 E-value=5.9e-07 Score=67.36 Aligned_cols=23 Identities=39% Similarity=0.561 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
.++|+|++|+|||||+|.|++..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcc
Confidence 37999999999999999999754
No 383
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.41 E-value=2.3e-06 Score=57.74 Aligned_cols=135 Identities=17% Similarity=0.228 Sum_probs=70.8
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeC-CCcc---------------c----
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT-AGQE---------------R---- 70 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~-~G~~---------------~---- 70 (175)
+|++.|+||+|||||+.+++..-... ..+..+ +++....-++...-|.+.|. .|.. +
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~-~~~v~G--f~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKK-GLPVGG--FYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHT-CGGEEE--EEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhcc-CCccce--EEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 68999999999999999987532111 122222 33444444555666677776 3311 1
Q ss_pred ---cccccccc----ccCCcEEEEEEECCChhhHHh-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH
Q 030524 71 ---FRSLIPSY----IRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR 142 (175)
Q Consensus 71 ---~~~~~~~~----~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~ 142 (175)
+....... +.++| ++++|=- ..++. ...|.+.+......+.|++.++-+.. .....+.+.+
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~--liviDEI--G~mEl~~~~F~~~v~~~l~s~~~vi~vv~~~~-------~~~~l~~i~~ 146 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSD--LIVIDEI--GKMELKSPGFREAVEKLLDSNKPVIGVVHKRS-------DNPFLEEIKR 146 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCH--EEEE-----STTCCC-CHHHHHHHHHHCTTSEEEEE--SS---------SCCHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCCCC--EEEEecc--chhhhcCHHHHHHHHHHHcCCCcEEEEEecCC-------CcHHHHHHHh
Confidence 11111111 13455 5566521 11222 34455555555556788888876662 1124566777
Q ss_pred hcCCeEEEeccCCCCCH
Q 030524 143 ELNVMFIETSAKAGFNI 159 (175)
Q Consensus 143 ~~~~~~~~~s~~~~~~v 159 (175)
+.++.+++++..+.+.+
T Consensus 147 ~~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 147 RPDVKIFEVTEENRDAL 163 (168)
T ss_dssp TTTSEEEE--TTTCCCH
T ss_pred CCCcEEEEeChhHHhhH
Confidence 77899999988776655
No 384
>PRK13796 GTPase YqeH; Provisional
Probab=98.39 E-value=2.5e-06 Score=64.54 Aligned_cols=92 Identities=26% Similarity=0.384 Sum_probs=60.9
Q ss_pred cccccccccccCCc-EEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHH----HHHHhc
Q 030524 70 RFRSLIPSYIRDSS-VAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGE----AKSREL 144 (175)
Q Consensus 70 ~~~~~~~~~~~~~d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~----~~~~~~ 144 (175)
.|....+.. ...+ .+++|+|+.+.. ..|...+.... .+.|+++|+||+|+.+. .....+.. .+++..
T Consensus 58 ~~~~~l~~i-~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~-~~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 58 DFLKLLNGI-GDSDALVVNVVDIFDFN-----GSWIPGLHRFV-GNNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKEL 129 (365)
T ss_pred HHHHHHHhh-cccCcEEEEEEECccCC-----CchhHHHHHHh-CCCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhc
Confidence 455544443 4445 889999987642 22333444333 26789999999999642 23333333 335556
Q ss_pred CC---eEEEeccCCCCCHHHHHHHHHHH
Q 030524 145 NV---MFIETSAKAGFNIKLCCHTLNSL 169 (175)
Q Consensus 145 ~~---~~~~~s~~~~~~v~~~f~~l~~~ 169 (175)
++ .++.+||+++.|++++++.+.+.
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 66 58999999999999999998764
No 385
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.39 E-value=5e-06 Score=63.70 Aligned_cols=141 Identities=17% Similarity=0.139 Sum_probs=74.4
Q ss_pred ceeEEEECCCCCCHHHHHHHHhc------CCC----CCcccc-----------cceeeEEEEEEEEC-------------
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMY------DKF----DNTYQA-----------TIGIDFLSKTMYLE------------- 54 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~------~~~----~~~~~~-----------~~~~~~~~~~~~~~------------- 54 (175)
+..|+++|++||||||++..|.. ... ...+.+ ..+++++......+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 56789999999999999998752 111 011110 11122221110000
Q ss_pred CeEEEEEEEeCCCcccccc----ccccc--ccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 030524 55 DRTVRLQLWDTAGQERFRS----LIPSY--IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (175)
Q Consensus 55 ~~~~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~ 128 (175)
...+.+.|+||+|...... ....+ ..+.|-+++|.|+.-...-.. ....+... --+--+|+||.|...
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~---~a~~F~~~---~~~~g~IlTKlD~~a 253 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEA---QAKAFKDS---VDVGSVIITKLDGHA 253 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHH---HHHHHHhc---cCCcEEEEECccCCC
Confidence 1246789999999543222 11111 235788999999875422222 22222221 134567789999532
Q ss_pred CCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHH
Q 030524 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKL 161 (175)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~ 161 (175)
..-.+.......+.|+..++ .|+.+++
T Consensus 254 ----rgG~aLs~~~~t~~PI~fig--~Ge~v~D 280 (429)
T TIGR01425 254 ----KGGGALSAVAATKSPIIFIG--TGEHIDD 280 (429)
T ss_pred ----CccHHhhhHHHHCCCeEEEc--CCCChhh
Confidence 12234555666677766663 3444443
No 386
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.38 E-value=1.3e-06 Score=64.09 Aligned_cols=99 Identities=21% Similarity=0.192 Sum_probs=64.1
Q ss_pred CCCccc-ccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHh
Q 030524 65 TAGQER-FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE 143 (175)
Q Consensus 65 ~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~ 143 (175)
.|||.. -.......+.++|++++|+|+.++.+.+. .++.... .+.|+++|+||+|+.+... ......+..+
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~~--~~~~~~~~~~ 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPEV--TKKWIEYFEE 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHHH--HHHHHHHHHH
Confidence 466532 22344566889999999999987644332 1222222 2689999999999853211 1112222234
Q ss_pred cCCeEEEeccCCCCCHHHHHHHHHHHHh
Q 030524 144 LNVMFIETSAKAGFNIKLCCHTLNSLIT 171 (175)
Q Consensus 144 ~~~~~~~~s~~~~~~v~~~f~~l~~~~~ 171 (175)
.+.+++.+|++.+.|+.++...+.+.+.
T Consensus 79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 79 QGIKALAINAKKGQGVKKILKAAKKLLK 106 (287)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 4678899999999999999888776653
No 387
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.37 E-value=1.1e-06 Score=66.37 Aligned_cols=57 Identities=25% Similarity=0.339 Sum_probs=35.5
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCC----cccccceeeEEEEEEEECCeEEEEEEEeCCCcc
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDN----TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 69 (175)
.++.++|.+|+|||||+|++++..... ......+.+........++ .+.++||||-.
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~ 215 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGII 215 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCC
Confidence 489999999999999999999853211 1111112222223333322 25799999954
No 388
>PRK13796 GTPase YqeH; Provisional
Probab=98.35 E-value=9e-07 Score=66.95 Aligned_cols=56 Identities=23% Similarity=0.330 Sum_probs=34.9
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCc----ccccceeeEEEEEEEECCeEEEEEEEeCCCc
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNT----YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 68 (175)
.++.++|.+|+|||||+|+|++...... ..+..+.+.....+..++. ..++||||-
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi 220 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGI 220 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCc
Confidence 4799999999999999999986431110 1111222333333334332 479999995
No 389
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.34 E-value=6.2e-07 Score=68.78 Aligned_cols=55 Identities=24% Similarity=0.214 Sum_probs=39.7
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCc
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 68 (175)
.+.|++||-|||||||+||.|.+++.. ....|..+.++++.. +.. .+-++||||.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~--ls~---~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIF--LSP---SVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEE--cCC---CceecCCCCc
Confidence 489999999999999999999998644 333444443333333 333 4789999993
No 390
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=1.9e-06 Score=72.82 Aligned_cols=111 Identities=21% Similarity=0.220 Sum_probs=68.1
Q ss_pred EEECCCCCCHHHHHHHHhcCCCC-Cccccc---cee-eEEEEEEEECCeEEEEEEEeCCCc--------cccccccccc-
Q 030524 13 VFLGDQSVGKTSIITRFMYDKFD-NTYQAT---IGI-DFLSKTMYLEDRTVRLQLWDTAGQ--------ERFRSLIPSY- 78 (175)
Q Consensus 13 ~l~G~~~~GKSsli~~l~~~~~~-~~~~~~---~~~-~~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~~~~- 78 (175)
+++|++|+||||++.. .+..++ ...... ... +..+. ..+.+ .-.++||+|. +.....|..+
T Consensus 129 ~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~gT~~cd-wwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~fL 203 (1188)
T COG3523 129 MVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPGTRNCD-WWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGFL 203 (1188)
T ss_pred EEecCCCCCcchHHhc-ccccCcchhhhccccccCCCCcccC-ccccc---ceEEEcCCcceecccCcchhhHHHHHHHH
Confidence 6899999999999864 222221 111111 111 12222 22222 3588999982 1223345444
Q ss_pred --------ccCCcEEEEEEECCC-----h----hhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 030524 79 --------IRDSSVAVVVYDVAS-----R----QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (175)
Q Consensus 79 --------~~~~d~~i~v~d~~~-----~----~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~ 128 (175)
.+-.|++|+.+|+.+ + .-...++..++++........||++++||.|+..
T Consensus 204 ~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 204 GLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 235699999999873 1 1123366677888887788999999999999864
No 391
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.34 E-value=1.1e-06 Score=63.69 Aligned_cols=58 Identities=19% Similarity=0.245 Sum_probs=35.1
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCCC------Ccc-cccceeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKFD------NTY-QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 72 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 72 (175)
..+++|++|+|||||+|+|...... ... ...++ +.....+.+++.+ .++||||..++.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHT-Tt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHT-TTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCc-cceEEEEEcCCCC---EEEeCCCCCccC
Confidence 5678999999999999999873211 111 11111 2233333443333 689999966544
No 392
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.33 E-value=1.4e-06 Score=62.33 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=21.3
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
-.++++|++|+|||||+|+|++..
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhh
Confidence 468899999999999999999754
No 393
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.30 E-value=7e-06 Score=61.93 Aligned_cols=140 Identities=13% Similarity=0.075 Sum_probs=70.2
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCC--C-cccccc--------------------eeeEEEEEEE-------ECCeEE
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFD--N-TYQATI--------------------GIDFLSKTMY-------LEDRTV 58 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~--~-~~~~~~--------------------~~~~~~~~~~-------~~~~~~ 58 (175)
.-.++++||+|+||||++..|...... . ...... ++........ ..-...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 457889999999999999988653211 0 000001 1111110000 001234
Q ss_pred EEEEEeCCCccccccc----cccc--ccCCcEEEEEEECCCh-hhHHhHHHHHHHHHHhcCC--CCcEEEEEeCCCCCCC
Q 030524 59 RLQLWDTAGQERFRSL----IPSY--IRDSSVAVVVYDVASR-QSFLNTSKWIDEVRTERGS--DVIIVLVGNKTDLVEK 129 (175)
Q Consensus 59 ~~~i~D~~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~--~~~~iiv~nk~D~~~~ 129 (175)
.+.++||+|....... ...+ .....-.++|.+++.. +.+..+...+......... .-+--+|.||.|...
T Consensus 217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~- 295 (374)
T PRK14722 217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS- 295 (374)
T ss_pred CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC-
Confidence 6899999995533221 1111 1233456788888754 3333332222222110000 012345669999532
Q ss_pred CCCCHHHHHHHHHhcCCeEEEec
Q 030524 130 RQVSIEEGEAKSRELNVMFIETS 152 (175)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~s 152 (175)
..-.+...+...+.|+..++
T Consensus 296 ---~~G~~l~~~~~~~lPi~yvt 315 (374)
T PRK14722 296 ---NLGGVLDTVIRYKLPVHYVS 315 (374)
T ss_pred ---CccHHHHHHHHHCcCeEEEe
Confidence 23356666677777666553
No 394
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=98.29 E-value=0.00013 Score=48.76 Aligned_cols=145 Identities=8% Similarity=0.061 Sum_probs=104.6
Q ss_pred CCCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEe-CCCcccccccccccccC
Q 030524 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD-TAGQERFRSLIPSYIRD 81 (175)
Q Consensus 3 ~~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D-~~G~~~~~~~~~~~~~~ 81 (175)
.++..+...|+++|..+.++..|.+.++...- +. . +++++-- .|-..+. ...=+.
T Consensus 9 klp~ln~atiLLVg~e~~~~~~LA~a~l~~~~------~~--~------------l~Vh~a~sLPLp~e~----~~lRpr 64 (176)
T PF11111_consen 9 KLPELNTATILLVGTEEALLQQLAEAMLEEDK------EF--K------------LKVHLAKSLPLPSEN----NNLRPR 64 (176)
T ss_pred cCCCcceeEEEEecccHHHHHHHHHHHHhhcc------ce--e------------EEEEEeccCCCcccc----cCCCce
Confidence 46777899999999999999999999885210 01 0 1111111 1111111 111346
Q ss_pred CcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHH
Q 030524 82 SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKL 161 (175)
Q Consensus 82 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~ 161 (175)
.|.++|++|.....+++.++.-+..+...+-. -.++++++.....+...+..++..+++..+.+|++.+.-...++...
T Consensus 65 IDlIVFvinl~sk~SL~~ve~SL~~vd~~ffl-GKVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~ 143 (176)
T PF11111_consen 65 IDLIVFVINLHSKYSLQSVEASLSHVDPSFFL-GKVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTS 143 (176)
T ss_pred eEEEEEEEecCCcccHHHHHHHHhhCChhhhc-cceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHH
Confidence 89999999999999999999888877655433 44666677777666678889999999999999999999888888887
Q ss_pred HHHHHHHHHhh
Q 030524 162 CCHTLNSLITV 172 (175)
Q Consensus 162 ~f~~l~~~~~~ 172 (175)
+-..|.+.+..
T Consensus 144 lAqRLL~~lqi 154 (176)
T PF11111_consen 144 LAQRLLRMLQI 154 (176)
T ss_pred HHHHHHHHHHH
Confidence 77777776543
No 395
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.28 E-value=1.2e-05 Score=58.49 Aligned_cols=96 Identities=17% Similarity=0.193 Sum_probs=70.3
Q ss_pred ccccccccccCCcEEEEEEECCChh-hHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEE
Q 030524 71 FRSLIPSYIRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFI 149 (175)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~ 149 (175)
-..+.+.-+.+.|-.++++++.+|+ +...+.+++-.... .++..++++||+|+.++.+....+........+++.+
T Consensus 69 kn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~ 145 (301)
T COG1162 69 KNVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVL 145 (301)
T ss_pred cCceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEE
Confidence 3345555667889999999998885 44445555444333 4677778899999976554444456667777899999
Q ss_pred EeccCCCCCHHHHHHHHHHH
Q 030524 150 ETSAKAGFNIKLCCHTLNSL 169 (175)
Q Consensus 150 ~~s~~~~~~v~~~f~~l~~~ 169 (175)
.+|+++++++.++...+...
T Consensus 146 ~~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 146 FVSAKNGDGLEELAELLAGK 165 (301)
T ss_pred EecCcCcccHHHHHHHhcCC
Confidence 99999999999998887654
No 396
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=2.7e-06 Score=63.63 Aligned_cols=157 Identities=18% Similarity=0.212 Sum_probs=92.7
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCC-------------------CCccc----c------cceeeEEEEEEEECCeE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF-------------------DNTYQ----A------TIGIDFLSKTMYLEDRT 57 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~-------------------~~~~~----~------~~~~~~~~~~~~~~~~~ 57 (175)
..++++.++|...+||||+-..++...- ...|. . ..+.+.......++-..
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~ 156 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN 156 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence 4679999999999999999777654210 00000 0 01111111122222333
Q ss_pred EEEEEEeCCCcccccccccccccCCcEEEEEEECCCh---hhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCC--CCC
Q 030524 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR---QSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVE--KRQ 131 (175)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~--~~~ 131 (175)
.++.+.|+|||..|-..+-.-..++|..++|+++.-. ..|+.-.+-.++...+.. .-...++++||+|-.. ...
T Consensus 157 ~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~ 236 (501)
T KOG0459|consen 157 KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSN 236 (501)
T ss_pred eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcch
Confidence 5799999999999888877778899999999987422 234432122222222221 3455677889999431 111
Q ss_pred CC----HHHHHHHHHhcC------CeEEEeccCCCCCHHHHH
Q 030524 132 VS----IEEGEAKSRELN------VMFIETSAKAGFNIKLCC 163 (175)
Q Consensus 132 ~~----~~~~~~~~~~~~------~~~~~~s~~~~~~v~~~f 163 (175)
.- .+....+.+..| ..|+++|..+|.++.+.-
T Consensus 237 eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 237 ERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred hhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence 11 222333444333 469999999999988643
No 397
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.23 E-value=1.1e-05 Score=57.29 Aligned_cols=82 Identities=20% Similarity=0.312 Sum_probs=51.1
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCccc-------ccccccccccC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRSLIPSYIRD 81 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~ 81 (175)
-++.++|-|.+||||++..+.+-..+ +.+..+. .....-.+.. ...++++.|.||--+ .....-...+.
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyeftt-l~~vpG~~~y--~gaKiqlldlpgiiegakdgkgrg~qviavart 136 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTT-LTTVPGVIRY--KGAKIQLLDLPGIIEGAKDGKGRGKQVIAVART 136 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCcccccccee-EEEecceEec--cccceeeecCcchhcccccCCCCccEEEEEeec
Confidence 48999999999999999998875433 2222222 1111111112 235689999998321 11122334567
Q ss_pred CcEEEEEEECCCh
Q 030524 82 SSVAVVVYDVASR 94 (175)
Q Consensus 82 ~d~~i~v~d~~~~ 94 (175)
|+.+++|.|+..|
T Consensus 137 cnli~~vld~~kp 149 (358)
T KOG1487|consen 137 CNLIFIVLDVLKP 149 (358)
T ss_pred ccEEEEEeeccCc
Confidence 8999999998754
No 398
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.22 E-value=3.4e-06 Score=61.82 Aligned_cols=59 Identities=24% Similarity=0.194 Sum_probs=36.4
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcc-cc-----cceeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTY-QA-----TIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 71 (175)
-.++++|++|+|||||+|.|++....... .+ ....+.....+...+. ..++||||..++
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence 57899999999999999999985432211 11 1111222233333322 268999997654
No 399
>PRK00098 GTPase RsgA; Reviewed
Probab=98.19 E-value=4.8e-06 Score=61.39 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=21.8
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKF 34 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~ 34 (175)
-.++++|++|+|||||+|.|++...
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcC
Confidence 4688999999999999999987643
No 400
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.19 E-value=3.7e-05 Score=57.17 Aligned_cols=95 Identities=12% Similarity=0.124 Sum_probs=50.1
Q ss_pred EEEEEEeCCCccccccccccccc--------CCcEEEEEEECCChhhHHh-HHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 030524 58 VRLQLWDTAGQERFRSLIPSYIR--------DSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (175)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nk~D~~~ 128 (175)
....++++.|-.+-......+.. ..+.+|.|+|+.+...... ......++. .+. ++++||+|+..
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~-~AD-----~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVG-YAD-----RILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHH-hCC-----EEEEeccccCC
Confidence 45678899986544333333211 3488999999875422211 111112222 222 77789999865
Q ss_pred CCCCCHHHHHHHHHhcC--CeEEEeccCCCCCHHHHH
Q 030524 129 KRQVSIEEGEAKSRELN--VMFIETSAKAGFNIKLCC 163 (175)
Q Consensus 129 ~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~v~~~f 163 (175)
+. +..+...+..+ ++++.++ ........+|
T Consensus 165 ~~----~~~~~~l~~lnp~a~i~~~~-~~~v~~~~l~ 196 (318)
T PRK11537 165 EA----EKLRERLARINARAPVYTVV-HGDIDLSLLF 196 (318)
T ss_pred HH----HHHHHHHHHhCCCCEEEEec-cCCCCHHHHh
Confidence 32 35555555554 4666554 2233444443
No 401
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.18 E-value=1.1e-05 Score=54.75 Aligned_cols=84 Identities=13% Similarity=0.077 Sum_probs=46.1
Q ss_pred EEEEEEEeCCCcccccc----ccccc--ccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 030524 57 TVRLQLWDTAGQERFRS----LIPSY--IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130 (175)
Q Consensus 57 ~~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~ 130 (175)
...+.+.|++|...+.. ....+ ....+.+++|+|...... ...+...+....+ ...++.||.|.....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~~---~~~viltk~D~~~~~ 155 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEALG---ITGVILTKLDGDARG 155 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhCC---CCEEEEECCcCCCCc
Confidence 34578899999642211 11111 134899999999865432 2233444433332 345667999964322
Q ss_pred CCCHHHHHHHHHhcCCeEEE
Q 030524 131 QVSIEEGEAKSRELNVMFIE 150 (175)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~ 150 (175)
......+...++|+..
T Consensus 156 ----g~~~~~~~~~~~p~~~ 171 (173)
T cd03115 156 ----GAALSIRAVTGKPIKF 171 (173)
T ss_pred ----chhhhhHHHHCcCeEe
Confidence 2233366666666543
No 402
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.15 E-value=2.7e-05 Score=57.79 Aligned_cols=144 Identities=22% Similarity=0.229 Sum_probs=79.5
Q ss_pred EEEECCCCCCHHHHHHHHhcCCCCC------------ccc-----cc-----ceeeEEEEEEEEC-------------Ce
Q 030524 12 LVFLGDQSVGKTSIITRFMYDKFDN------------TYQ-----AT-----IGIDFLSKTMYLE-------------DR 56 (175)
Q Consensus 12 i~l~G~~~~GKSsli~~l~~~~~~~------------~~~-----~~-----~~~~~~~~~~~~~-------------~~ 56 (175)
.++-|--|||||||++.++.+.... ..+ .. ..+...+.-.+++ ..
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~ 83 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRD 83 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhccC
Confidence 4566999999999999998764300 000 00 0111111122211 12
Q ss_pred EEEEEEEeCCCcccccccccccc--------cCCcEEEEEEECCChhhHHh-HHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524 57 TVRLQLWDTAGQERFRSLIPSYI--------RDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (175)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nk~D~~ 127 (175)
.....++++.|-..-...+..+. -..|++|-|+|+.+-..... +..........+. ++++||.|+.
T Consensus 84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD-----~ivlNK~Dlv 158 (323)
T COG0523 84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFAD-----VIVLNKTDLV 158 (323)
T ss_pred CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCc-----EEEEecccCC
Confidence 24577888888443322222221 13588999999876533222 4444444444443 7888999998
Q ss_pred CCCCCCHHHHHHHHHhcC--CeEEEeccCCCCCHHHHH
Q 030524 128 EKRQVSIEEGEAKSRELN--VMFIETSAKAGFNIKLCC 163 (175)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~v~~~f 163 (175)
.+.. ....+...++.+ ++++.++. .+.+..+++
T Consensus 159 ~~~~--l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll 193 (323)
T COG0523 159 DAEE--LEALEARLRKLNPRARIIETSY-GDVDLAELL 193 (323)
T ss_pred CHHH--HHHHHHHHHHhCCCCeEEEccc-cCCCHHHhh
Confidence 7653 445555666655 47787776 334443433
No 403
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.12 E-value=1.7e-05 Score=54.87 Aligned_cols=138 Identities=17% Similarity=0.154 Sum_probs=73.2
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCC----------cc-----------cccceeeEEEEEEE-------------ECC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDN----------TY-----------QATIGIDFLSKTMY-------------LED 55 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~----------~~-----------~~~~~~~~~~~~~~-------------~~~ 55 (175)
-.|+++||+||||||.+-+|....... .+ ....++.++..... ...
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 468999999999999988875421100 00 00112222211100 001
Q ss_pred eEEEEEEEeCCCcccccc----cccccc--cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 030524 56 RTVRLQLWDTAGQERFRS----LIPSYI--RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129 (175)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~ 129 (175)
.++.+.++||+|...+.. .+..++ ...+-+++|.+++... +.+. ....+.... ++. -++.||.|...
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~--~~~~-~~~~~~~~~--~~~-~lIlTKlDet~- 154 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ--EDLE-QALAFYEAF--GID-GLILTKLDETA- 154 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG--HHHH-HHHHHHHHS--STC-EEEEESTTSSS-
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh--HHHH-HHHHHhhcc--cCc-eEEEEeecCCC-
Confidence 124689999999543322 122221 1577888999987542 2222 222222222 122 35579999532
Q ss_pred CCCCHHHHHHHHHhcCCeEEEeccCCCCCH
Q 030524 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNI 159 (175)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 159 (175)
..-....++.+.+.|+-.++ +|+++
T Consensus 155 ---~~G~~l~~~~~~~~Pi~~it--~Gq~V 179 (196)
T PF00448_consen 155 ---RLGALLSLAYESGLPISYIT--TGQRV 179 (196)
T ss_dssp ---TTHHHHHHHHHHTSEEEEEE--SSSST
T ss_pred ---CcccceeHHHHhCCCeEEEE--CCCCh
Confidence 23467777888888877774 45555
No 404
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.10 E-value=7.1e-06 Score=55.94 Aligned_cols=82 Identities=24% Similarity=0.175 Sum_probs=44.7
Q ss_pred EEEEEEeCCCccccccc--cccc---ccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC
Q 030524 58 VRLQLWDTAGQERFRSL--IPSY---IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV 132 (175)
Q Consensus 58 ~~~~i~D~~G~~~~~~~--~~~~---~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~ 132 (175)
....++++.|-..-... .... .-..+.+|.|+|+.+-.........+......+. ++++||+|+.++. .
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD-----vIvlnK~D~~~~~-~ 158 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFAD-----VIVLNKIDLVSDE-Q 158 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S-----EEEEE-GGGHHHH--
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcC-----EEEEeccccCChh-h
Confidence 45677888884433333 0100 1246889999999765444444444444444443 7788999986544 2
Q ss_pred CHHHHHHHHHhcC
Q 030524 133 SIEEGEAKSRELN 145 (175)
Q Consensus 133 ~~~~~~~~~~~~~ 145 (175)
..+..++..++.+
T Consensus 159 ~i~~~~~~ir~ln 171 (178)
T PF02492_consen 159 KIERVREMIRELN 171 (178)
T ss_dssp -HHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHC
Confidence 2345555555554
No 405
>PRK13695 putative NTPase; Provisional
Probab=98.10 E-value=0.00021 Score=48.50 Aligned_cols=49 Identities=6% Similarity=-0.056 Sum_probs=31.4
Q ss_pred CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 030524 112 GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170 (175)
Q Consensus 112 ~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~~ 170 (175)
..+.|++++.+|... ...........+..+++++.- |=+++.+.+.+.+
T Consensus 124 ~~~~~~i~v~h~~~~-------~~~~~~i~~~~~~~i~~~~~~---~r~~~~~~~~~~~ 172 (174)
T PRK13695 124 DSEKPVIATLHRRSV-------HPFVQEIKSRPGGRVYELTPE---NRDSLPFEILNRL 172 (174)
T ss_pred hCCCeEEEEECchhh-------HHHHHHHhccCCcEEEEEcch---hhhhHHHHHHHHH
Confidence 356899999887542 123444556667788888544 4457777777654
No 406
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.09 E-value=1.5e-05 Score=61.05 Aligned_cols=138 Identities=16% Similarity=0.139 Sum_probs=71.7
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCC---Cccc---cc-----------------ceeeEEEEEEE-------ECCeEE
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFD---NTYQ---AT-----------------IGIDFLSKTMY-------LEDRTV 58 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~---~~~~---~~-----------------~~~~~~~~~~~-------~~~~~~ 58 (175)
.-.|+++|+.|+||||++..|.+.... .... .. .++........ ..-...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~ 270 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK 270 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence 458999999999999999977653110 0000 00 00111000000 011224
Q ss_pred EEEEEeCCCccccc----ccccccc--cCCcEEEEEEECCC-hhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 030524 59 RLQLWDTAGQERFR----SLIPSYI--RDSSVAVVVYDVAS-RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ 131 (175)
Q Consensus 59 ~~~i~D~~G~~~~~----~~~~~~~--~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~ 131 (175)
.+.++||+|..... .....+. ...+-.++|.|++. ...+..+. ..+. ..+ +--+|+||.|...
T Consensus 271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~---~~f~---~~~-~~~~I~TKlDEt~--- 340 (420)
T PRK14721 271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVI---SAYQ---GHG-IHGCIITKVDEAA--- 340 (420)
T ss_pred CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHH---HHhc---CCC-CCEEEEEeeeCCC---
Confidence 67999999954322 1222221 23456778888873 33333322 2222 112 2245569999532
Q ss_pred CCHHHHHHHHHhcCCeEEEeccCCCCCH
Q 030524 132 VSIEEGEAKSRELNVMFIETSAKAGFNI 159 (175)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~s~~~~~~v 159 (175)
..-.+...+...++|+..++ +|.+|
T Consensus 341 -~~G~~l~~~~~~~lPi~yvt--~Gq~V 365 (420)
T PRK14721 341 -SLGIALDAVIRRKLVLHYVT--NGQKV 365 (420)
T ss_pred -CccHHHHHHHHhCCCEEEEE--CCCCc
Confidence 33456667777888777774 45554
No 407
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=9e-06 Score=62.69 Aligned_cols=117 Identities=20% Similarity=0.219 Sum_probs=75.6
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCC------------CCcc--cccceeeEEEEEEE----------------ECC
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF------------DNTY--QATIGIDFLSKTMY----------------LED 55 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~------------~~~~--~~~~~~~~~~~~~~----------------~~~ 55 (175)
..+-.++.++.+...|||||.+.|+.+.- .... ....++++.+..+. .++
T Consensus 16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~ 95 (842)
T KOG0469|consen 16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG 95 (842)
T ss_pred ccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence 34557889999999999999999875321 1100 01122233222221 134
Q ss_pred eEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 030524 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126 (175)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~ 126 (175)
..+-+.++|.|||-+|.+.....++-.|+.++|+|.-+.--.+.-..+.+.+. ..+.-++++||.|.
T Consensus 96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~----ERIkPvlv~NK~DR 162 (842)
T KOG0469|consen 96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIA----ERIKPVLVMNKMDR 162 (842)
T ss_pred cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHH----hhccceEEeehhhH
Confidence 56788999999999999999999999999999999876532222222222222 23444567899994
No 408
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.03 E-value=7.7e-05 Score=58.59 Aligned_cols=139 Identities=17% Similarity=0.185 Sum_probs=72.2
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCC------------Ccccc-----------cceeeEEEEEEE------E-CCeEE
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFD------------NTYQA-----------TIGIDFLSKTMY------L-EDRTV 58 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~------------~~~~~-----------~~~~~~~~~~~~------~-~~~~~ 58 (175)
.-.|+|+|++|+||||++..|...... +.+.. ..++.+...... + .-..+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~ 429 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY 429 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence 357889999999999999887642100 00000 000111110000 0 01235
Q ss_pred EEEEEeCCCcccccccccc---ccc--CCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCC
Q 030524 59 RLQLWDTAGQERFRSLIPS---YIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS 133 (175)
Q Consensus 59 ~~~i~D~~G~~~~~~~~~~---~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~ 133 (175)
.+.|+||+|.......... .+. .....++|++.+. +...+...+..+.. ..+.-+|+||.|.. ..
T Consensus 430 DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~----~~~~gvILTKlDEt----~~ 499 (559)
T PRK12727 430 KLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH----AKPQGVVLTKLDET----GR 499 (559)
T ss_pred CEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh----hCCeEEEEecCcCc----cc
Confidence 7899999995432211000 010 1234566677653 23344443333332 23556788999952 23
Q ss_pred HHHHHHHHHhcCCeEEEeccCCCCCH
Q 030524 134 IEEGEAKSRELNVMFIETSAKAGFNI 159 (175)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~s~~~~~~v 159 (175)
...........+.++..++ +|..|
T Consensus 500 lG~aLsv~~~~~LPI~yvt--~GQ~V 523 (559)
T PRK12727 500 FGSALSVVVDHQMPITWVT--DGQRV 523 (559)
T ss_pred hhHHHHHHHHhCCCEEEEe--CCCCc
Confidence 3567777778888877774 44444
No 409
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.99 E-value=6e-06 Score=61.69 Aligned_cols=57 Identities=23% Similarity=0.366 Sum_probs=41.6
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCC
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 67 (175)
..++++.++|-|++||||+||+|..+....- ..+.+++..-..+..+. .+.+.|+||
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~v-g~~pGvT~smqeV~Ldk---~i~llDsPg 306 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNV-GNVPGVTRSMQEVKLDK---KIRLLDSPG 306 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccC-CCCccchhhhhheeccC---CceeccCCc
Confidence 5689999999999999999999998876422 23333444444444444 579999999
No 410
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.99 E-value=3.2e-05 Score=51.14 Aligned_cols=58 Identities=16% Similarity=0.110 Sum_probs=35.8
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 030524 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD 125 (175)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D 125 (175)
.+.+.++||+|.. .....++..+|-++++....-.+.+.-++. .+...+ -++++||.|
T Consensus 91 ~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe~~D~y~~~k~---~~~~~~-----~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVG---QSEVDIASMADTTVVVMAPGAGDDIQAIKA---GIMEIA-----DIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccC---hhhhhHHHhCCEEEEEECCCchhHHHHhhh---hHhhhc-----CEEEEeCCC
Confidence 4678999999854 222347788998888887653333333322 222222 267789987
No 411
>PRK10867 signal recognition particle protein; Provisional
Probab=97.98 E-value=3.4e-05 Score=59.47 Aligned_cols=87 Identities=10% Similarity=0.019 Sum_probs=48.1
Q ss_pred EEEEEEEeCCCcccccc-cc---ccc--ccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 030524 57 TVRLQLWDTAGQERFRS-LI---PSY--IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130 (175)
Q Consensus 57 ~~~~~i~D~~G~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~ 130 (175)
.+.+.++||+|...... .+ ..+ .-+.+.+++|.|.... +........+.... ++ .-+|+||.|....
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~--~i-~giIlTKlD~~~r- 255 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL--GL-TGVILTKLDGDAR- 255 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC--CC-CEEEEeCccCccc-
Confidence 35789999999432211 11 111 1256788999998654 23333333333221 12 3456699995221
Q ss_pred CCCHHHHHHHHHhcCCeEEEecc
Q 030524 131 QVSIEEGEAKSRELNVMFIETSA 153 (175)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~s~ 153 (175)
.-.+.......++|+..++.
T Consensus 256 ---gG~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 256 ---GGAALSIRAVTGKPIKFIGT 275 (433)
T ss_pred ---ccHHHHHHHHHCcCEEEEeC
Confidence 12366667777887766643
No 412
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.97 E-value=4.5e-05 Score=41.33 Aligned_cols=44 Identities=16% Similarity=0.193 Sum_probs=30.1
Q ss_pred CCcEEEEEEECCCh--hhHHhHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 030524 81 DSSVAVVVYDVASR--QSFLNTSKWIDEVRTERGSDVIIVLVGNKTD 125 (175)
Q Consensus 81 ~~d~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D 125 (175)
-.++++|++|++.. .+.+.....+.+++... .+.|+++|.||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F-~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF-PNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT-TTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc-CCCCEEEEEeccC
Confidence 36899999999954 46667777888887776 4899999999998
No 413
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.96 E-value=9.5e-05 Score=60.49 Aligned_cols=140 Identities=16% Similarity=0.148 Sum_probs=72.9
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCC-Cc--cccc--------------------ceeeEEEEEE-------EECCeEEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFD-NT--YQAT--------------------IGIDFLSKTM-------YLEDRTVR 59 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~-~~--~~~~--------------------~~~~~~~~~~-------~~~~~~~~ 59 (175)
-.|+|+|+.|+||||++..|...... .. .... .+++.....- .-.-....
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 46889999999999999988754311 00 0000 0011110000 00112346
Q ss_pred EEEEeCCCccccc----cccccc--ccCCcEEEEEEECCCh-hhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC
Q 030524 60 LQLWDTAGQERFR----SLIPSY--IRDSSVAVVVYDVASR-QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV 132 (175)
Q Consensus 60 ~~i~D~~G~~~~~----~~~~~~--~~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~ 132 (175)
+.++||+|..... ...... ....+-.++|.|++.. +.+.++.+ .+......+ +--+|+||.|...
T Consensus 266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~---~f~~~~~~~-i~glIlTKLDEt~---- 337 (767)
T PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVH---AYRHGAGED-VDGCIITKLDEAT---- 337 (767)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHH---HHhhcccCC-CCEEEEeccCCCC----
Confidence 8999999932211 111111 2245667888888743 33443333 232211111 2245579999532
Q ss_pred CHHHHHHHHHhcCCeEEEeccCCCCCH
Q 030524 133 SIEEGEAKSRELNVMFIETSAKAGFNI 159 (175)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~s~~~~~~v 159 (175)
..-.+.......++|+..++ +|++|
T Consensus 338 ~~G~iL~i~~~~~lPI~yit--~GQ~V 362 (767)
T PRK14723 338 HLGPALDTVIRHRLPVHYVS--TGQKV 362 (767)
T ss_pred CccHHHHHHHHHCCCeEEEe--cCCCC
Confidence 23356667777788877774 55555
No 414
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.96 E-value=0.00014 Score=55.33 Aligned_cols=140 Identities=14% Similarity=0.138 Sum_probs=73.4
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCC--------------Ccccc-----------cceeeEEEEEEE-------ECC
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD--------------NTYQA-----------TIGIDFLSKTMY-------LED 55 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~--------------~~~~~-----------~~~~~~~~~~~~-------~~~ 55 (175)
.+-.|+++|++|+||||.+..+...... ..+.. ..++........ -.-
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 3467899999999999999887542110 00000 011111111100 011
Q ss_pred eEEEEEEEeCCCcccccc----cccccccC--Cc-EEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 030524 56 RTVRLQLWDTAGQERFRS----LIPSYIRD--SS-VAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (175)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~----~~~~~~~~--~d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~ 128 (175)
..+.+.++||+|...... ....++.. .+ -.++|.|++.. ...+...+..+.. .+ +--+++||.|...
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~---~~-~~~~I~TKlDet~ 326 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSP---FS-YKTVIFTKLDETT 326 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcC---CC-CCEEEEEeccCCC
Confidence 345799999999543221 12223332 23 57889998764 2334433333321 11 2345569999532
Q ss_pred CCCCCHHHHHHHHHhcCCeEEEeccCCCCCH
Q 030524 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159 (175)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 159 (175)
..-.+...+...+.|+..++ +|+++
T Consensus 327 ----~~G~~l~~~~~~~~Pi~yit--~Gq~v 351 (388)
T PRK12723 327 ----CVGNLISLIYEMRKEVSYVT--DGQIV 351 (388)
T ss_pred ----cchHHHHHHHHHCCCEEEEe--CCCCC
Confidence 23355666777777776663 45555
No 415
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.95 E-value=4.4e-05 Score=57.66 Aligned_cols=133 Identities=18% Similarity=0.161 Sum_probs=71.5
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCC-Ccc--cccceeeEEEE---------------EEE-E-----------CCeEE
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFD-NTY--QATIGIDFLSK---------------TMY-L-----------EDRTV 58 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~--~~~~~~~~~~~---------------~~~-~-----------~~~~~ 58 (175)
.-.|+++||+||||||.+-.|..+... ... ..-.+.|.+-. .+. + .-..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 567899999999999998887665431 111 11111111100 000 0 11334
Q ss_pred EEEEEeCCCcccccc----cccccccCC--cEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC
Q 030524 59 RLQLWDTAGQERFRS----LIPSYIRDS--SVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV 132 (175)
Q Consensus 59 ~~~i~D~~G~~~~~~----~~~~~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~ 132 (175)
.+.+.||.|...+.. .+..++..+ .-.-+|++++.. .+.++.-+..+.. -++. -++.||.|...
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~---~~i~-~~I~TKlDET~---- 352 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSL---FPID-GLIFTKLDETT---- 352 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhcc---CCcc-eeEEEcccccC----
Confidence 789999999654443 334444333 334556676643 3445554444432 1222 34459999532
Q ss_pred CHHHHHHHHHhcCCeEEEe
Q 030524 133 SIEEGEAKSRELNVMFIET 151 (175)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~ 151 (175)
..-.....+.+.+.|+..+
T Consensus 353 s~G~~~s~~~e~~~PV~Yv 371 (407)
T COG1419 353 SLGNLFSLMYETRLPVSYV 371 (407)
T ss_pred chhHHHHHHHHhCCCeEEE
Confidence 2345666666677766555
No 416
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.92 E-value=8.9e-05 Score=57.85 Aligned_cols=138 Identities=14% Similarity=0.098 Sum_probs=69.9
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCC-cc--c---cc-----------------ceeeEEEEEEE-------ECCeEEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDN-TY--Q---AT-----------------IGIDFLSKTMY-------LEDRTVR 59 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~-~~--~---~~-----------------~~~~~~~~~~~-------~~~~~~~ 59 (175)
--++|+|+.|+||||++..|....... .. . .. .++........ .+-....
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d 336 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNKH 336 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCCC
Confidence 468999999999999999887532110 00 0 00 00011000000 0111235
Q ss_pred EEEEeCCCcccccc---cccccccC---CcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCC
Q 030524 60 LQLWDTAGQERFRS---LIPSYIRD---SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS 133 (175)
Q Consensus 60 ~~i~D~~G~~~~~~---~~~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~ 133 (175)
+.++||+|...... .....+.. ..-.++|+|.+.. ...+.+....+. ....--+|+||.|... .
T Consensus 337 ~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~--~~~l~~i~~~f~----~~~~~g~IlTKlDet~----~ 406 (484)
T PRK06995 337 IVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH--GDTLNEVVQAYR----GPGLAGCILTKLDEAA----S 406 (484)
T ss_pred eEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc--HHHHHHHHHHhc----cCCCCEEEEeCCCCcc----c
Confidence 78999999432221 11111111 2336788887643 122222222221 1223345679999532 3
Q ss_pred HHHHHHHHHhcCCeEEEeccCCCCCH
Q 030524 134 IEEGEAKSRELNVMFIETSAKAGFNI 159 (175)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~s~~~~~~v 159 (175)
.-.+...+.+.++|+..++ +|++|
T Consensus 407 ~G~~l~i~~~~~lPI~yvt--~GQ~V 430 (484)
T PRK06995 407 LGGALDVVIRYKLPLHYVS--NGQRV 430 (484)
T ss_pred chHHHHHHHHHCCCeEEEe--cCCCC
Confidence 4466777778888877774 56666
No 417
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.91 E-value=4.2e-05 Score=50.00 Aligned_cols=105 Identities=15% Similarity=0.127 Sum_probs=62.1
Q ss_pred EECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCC
Q 030524 14 FLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVAS 93 (175)
Q Consensus 14 l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 93 (175)
.-|..|+|||++.-.+...-.. ....+.-++.. .......+.+.++|+|+.. .......+..+|.++++.+.+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~-~~~~~~~vd~D---~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~- 77 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAK-LGKRVLLLDAD---LGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE- 77 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEECC---CCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-
Confidence 3479999999997665432111 00111111100 0011112678999998743 333456788999999999874
Q ss_pred hhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 030524 94 RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126 (175)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~ 126 (175)
..+++.....++.+.... ...++.++.|+.+.
T Consensus 78 ~~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~ 109 (139)
T cd02038 78 PTSITDAYALIKKLAKQL-RVLNFRVVVNRAES 109 (139)
T ss_pred hhHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCC
Confidence 556666566555554433 35567788899974
No 418
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.91 E-value=0.00014 Score=56.06 Aligned_cols=87 Identities=13% Similarity=0.040 Sum_probs=49.8
Q ss_pred EEEEEEEeCCCcccccc-ccc---c--cccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 030524 57 TVRLQLWDTAGQERFRS-LIP---S--YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130 (175)
Q Consensus 57 ~~~~~i~D~~G~~~~~~-~~~---~--~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~ 130 (175)
.+.+.++||+|...... ... . ..-+.|.+++|+|+... +........+.... ++ .-+|.||.|....
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v--~i-~giIlTKlD~~~~- 254 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL--GL-TGVVLTKLDGDAR- 254 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC--CC-CEEEEeCccCccc-
Confidence 35689999999532221 111 1 12357889999998754 23333334443222 22 3556799994221
Q ss_pred CCCHHHHHHHHHhcCCeEEEecc
Q 030524 131 QVSIEEGEAKSRELNVMFIETSA 153 (175)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~s~ 153 (175)
.-.+...+...++|+..++.
T Consensus 255 ---~G~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 255 ---GGAALSVRSVTGKPIKFIGV 274 (428)
T ss_pred ---ccHHHHHHHHHCcCEEEEeC
Confidence 22366677777887776653
No 419
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.90 E-value=6.1e-05 Score=58.22 Aligned_cols=135 Identities=16% Similarity=0.156 Sum_probs=71.8
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcC----CC------CCccccc-----------ceeeEEEEEEEE-----------CC
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYD----KF------DNTYQAT-----------IGIDFLSKTMYL-----------ED 55 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~----~~------~~~~~~~-----------~~~~~~~~~~~~-----------~~ 55 (175)
.+..|+++|++|+||||++..|... .. .+.+.+. .++..+...... ..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 4678999999999999998876531 10 0111110 111111110000 00
Q ss_pred eEEEEEEEeCCCccccccc----cccc--ccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 030524 56 RTVRLQLWDTAGQERFRSL----IPSY--IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129 (175)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~ 129 (175)
....+.++||+|....... .... +..+|.+++|+|++... ........+.... + ..-+|.||.|...
T Consensus 174 ~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l--~-i~gvIlTKlD~~a- 246 (437)
T PRK00771 174 KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV--G-IGGIIITKLDGTA- 246 (437)
T ss_pred hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC--C-CCEEEEecccCCC-
Confidence 1237899999995433211 1111 33688999999987642 2222223322211 1 2346679999522
Q ss_pred CCCCHHHHHHHHHhcCCeEEEec
Q 030524 130 RQVSIEEGEAKSRELNVMFIETS 152 (175)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~s 152 (175)
..-.+.......+.|+..++
T Consensus 247 ---~~G~~ls~~~~~~~Pi~fig 266 (437)
T PRK00771 247 ---KGGGALSAVAETGAPIKFIG 266 (437)
T ss_pred ---cccHHHHHHHHHCcCEEEEe
Confidence 12355666677777776664
No 420
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.90 E-value=0.00014 Score=56.26 Aligned_cols=90 Identities=14% Similarity=0.105 Sum_probs=49.9
Q ss_pred EEEEEEeCCCccccc----cccccccc---CCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 030524 58 VRLQLWDTAGQERFR----SLIPSYIR---DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130 (175)
Q Consensus 58 ~~~~i~D~~G~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~ 130 (175)
+.+.++||+|..... .....++. ...-.++|++++-. ...+...+..+.. .+. --++.||.|...
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~---~~~-~~vI~TKlDet~-- 371 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSR---LPL-DGLIFTKLDETS-- 371 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCC---CCC-CEEEEecccccc--
Confidence 578999999964332 12223333 33466777887533 2233333233321 122 246679999532
Q ss_pred CCCHHHHHHHHHhcCCeEEEeccCCCCCH
Q 030524 131 QVSIEEGEAKSRELNVMFIETSAKAGFNI 159 (175)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 159 (175)
....+...+...++|+..++ +|.+|
T Consensus 372 --~~G~i~~~~~~~~lPv~yit--~Gq~V 396 (424)
T PRK05703 372 --SLGSILSLLIESGLPISYLT--NGQRV 396 (424)
T ss_pred --cccHHHHHHHHHCCCEEEEe--CCCCC
Confidence 23357777888888877774 44443
No 421
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.81 E-value=0.00017 Score=55.18 Aligned_cols=134 Identities=20% Similarity=0.237 Sum_probs=68.9
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCC-CC----------Cccc-----------ccceeeEEEEE-E-----EECCeEEEE
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDK-FD----------NTYQ-----------ATIGIDFLSKT-M-----YLEDRTVRL 60 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~-~~----------~~~~-----------~~~~~~~~~~~-~-----~~~~~~~~~ 60 (175)
...++++|++||||||++..|.... .. +.+. ...+++..... . ......+.+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 3568899999999999999886421 00 0000 01111111110 0 011134578
Q ss_pred EEEeCCCcccccc----ccccccc-----CCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 030524 61 QLWDTAGQERFRS----LIPSYIR-----DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ 131 (175)
Q Consensus 61 ~i~D~~G~~~~~~----~~~~~~~-----~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~ 131 (175)
.++||+|...... .+..++. ...-.++|.|++... +.+......+. ..+ +--+|+||.|...
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~---~~~-~~glIlTKLDEt~--- 373 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYE---SLN-YRRILLTKLDEAD--- 373 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhc---CCC-CCEEEEEcccCCC---
Confidence 9999999542211 2222222 234677888887542 22332222221 112 2245569999532
Q ss_pred CCHHHHHHHHHhcCCeEEEec
Q 030524 132 VSIEEGEAKSRELNVMFIETS 152 (175)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~s 152 (175)
..-.+...+...+.|+..++
T Consensus 374 -~~G~il~i~~~~~lPI~ylt 393 (432)
T PRK12724 374 -FLGSFLELADTYSKSFTYLS 393 (432)
T ss_pred -CccHHHHHHHHHCCCEEEEe
Confidence 22346667777787766654
No 422
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.81 E-value=8.7e-05 Score=56.08 Aligned_cols=134 Identities=16% Similarity=0.234 Sum_probs=69.8
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCC----C-----C-Ccccc-----------cceeeEEEEEE--EE-------C-CeE
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDK----F-----D-NTYQA-----------TIGIDFLSKTM--YL-------E-DRT 57 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~----~-----~-~~~~~-----------~~~~~~~~~~~--~~-------~-~~~ 57 (175)
.-.++++|+.|+||||++..+.... . . +.+.. ..++.+....- .+ . ...
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~ 285 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNC 285 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCC
Confidence 4568899999999999998875421 0 0 01111 01111111000 00 0 023
Q ss_pred EEEEEEeCCCcccccc----ccccccc--CCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 030524 58 VRLQLWDTAGQERFRS----LIPSYIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ 131 (175)
Q Consensus 58 ~~~~i~D~~G~~~~~~----~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~ 131 (175)
+.+.++||+|...... ....+.. +.+.+++|.+.+ ...+.+...+..+. ..+ +--+|+||.|...
T Consensus 286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag--~~~~d~~~i~~~f~---~l~-i~glI~TKLDET~--- 356 (407)
T PRK12726 286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG--MKSADVMTILPKLA---EIP-IDGFIITKMDETT--- 356 (407)
T ss_pred CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc--ccHHHHHHHHHhcC---cCC-CCEEEEEcccCCC---
Confidence 5789999999643222 2222222 446667777653 22333333333221 112 2345579999532
Q ss_pred CCHHHHHHHHHhcCCeEEEec
Q 030524 132 VSIEEGEAKSRELNVMFIETS 152 (175)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~s 152 (175)
..-.+...+...+.|+..++
T Consensus 357 -~~G~~Lsv~~~tglPIsylt 376 (407)
T PRK12726 357 -RIGDLYTVMQETNLPVLYMT 376 (407)
T ss_pred -CccHHHHHHHHHCCCEEEEe
Confidence 23466777788888876664
No 423
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.81 E-value=1.9e-05 Score=50.20 Aligned_cols=22 Identities=14% Similarity=0.332 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~ 32 (175)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998764
No 424
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.76 E-value=0.0002 Score=49.49 Aligned_cols=23 Identities=17% Similarity=0.426 Sum_probs=19.4
Q ss_pred ceeEEEECCCCCCHHHHHHHHhc
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
.+-++++||.||||||+.+.+..
T Consensus 3 ~ya~lV~GpAgSGKSTyC~~~~~ 25 (273)
T KOG1534|consen 3 RYAQLVMGPAGSGKSTYCSSMYE 25 (273)
T ss_pred ceeEEEEccCCCCcchHHHHHHH
Confidence 45678999999999999988753
No 425
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.75 E-value=0.00019 Score=44.33 Aligned_cols=82 Identities=15% Similarity=0.143 Sum_probs=50.7
Q ss_pred EEEEC-CCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEE
Q 030524 12 LVFLG-DQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (175)
Q Consensus 12 i~l~G-~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (175)
|.+.| ..|+||||+...+...-.. ...+..-++ .+.. +.+.++|+|+... ......+..+|.++++.+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~vl~~d-------~d~~-~d~viiD~p~~~~--~~~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRVLLID-------LDPQ-YDYIIIDTPPSLG--LLTRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcEEEEe-------CCCC-CCEEEEeCcCCCC--HHHHHHHHHCCEEEEecc
Confidence 56776 6699999998766542211 111111111 1111 6789999998543 223356778999999998
Q ss_pred CCChhhHHhHHHHHH
Q 030524 91 VASRQSFLNTSKWID 105 (175)
Q Consensus 91 ~~~~~~~~~~~~~~~ 105 (175)
. +..+++.+.++++
T Consensus 71 ~-~~~s~~~~~~~~~ 84 (104)
T cd02042 71 P-SPLDLDGLEKLLE 84 (104)
T ss_pred C-CHHHHHHHHHHHH
Confidence 6 4567777776665
No 426
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.75 E-value=3.4e-05 Score=42.79 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=18.2
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q 030524 11 KLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~ 31 (175)
..+|.|+.|+|||||++.+..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999998653
No 427
>PRK08118 topology modulation protein; Reviewed
Probab=97.74 E-value=2.7e-05 Score=52.52 Aligned_cols=22 Identities=18% Similarity=0.483 Sum_probs=19.9
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~ 32 (175)
+|+|+|++|||||||...|...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988754
No 428
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=8.6e-05 Score=55.65 Aligned_cols=100 Identities=20% Similarity=0.248 Sum_probs=57.4
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccc---------------------cceeeEEEEEEEE------------
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA---------------------TIGIDFLSKTMYL------------ 53 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~---------------------~~~~~~~~~~~~~------------ 53 (175)
.++--|+++|-.|+||||.+-.|........+.. ...+.++......
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~ 178 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDR 178 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHH
Confidence 3456789999999999999887654221111100 1223344332211
Q ss_pred -CCeEEEEEEEeCCCccccc-cccc-----ccccCCcEEEEEEECCChhhHHhHHHHHHH
Q 030524 54 -EDRTVRLQLWDTAGQERFR-SLIP-----SYIRDSSVAVVVYDVASRQSFLNTSKWIDE 106 (175)
Q Consensus 54 -~~~~~~~~i~D~~G~~~~~-~~~~-----~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 106 (175)
....+.+.|.||+|..... ++.. .-.-+.|-+|||.|++=...-+...+.+++
T Consensus 179 fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~ 238 (483)
T KOG0780|consen 179 FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKE 238 (483)
T ss_pred HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHH
Confidence 2345679999999943211 1111 112368999999999866555554443333
No 429
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.72 E-value=8.1e-05 Score=54.19 Aligned_cols=57 Identities=21% Similarity=0.346 Sum_probs=35.1
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCC------CcccccceeeEEEEE-EEECCeEEEEEEEeCCC
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD------NTYQATIGIDFLSKT-MYLEDRTVRLQLWDTAG 67 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~------~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~G 67 (175)
..++++++|-||+|||||+|.+.....- ....+.. +..... +.+.... .+.+.||||
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGV--T~~V~~~iri~~rp-~vy~iDTPG 205 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGV--TRRVSERIRISHRP-PVYLIDTPG 205 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCc--eeeehhheEeccCC-ceEEecCCC
Confidence 4689999999999999999987543221 1222222 222222 2222222 488999999
No 430
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.69 E-value=3.1e-05 Score=50.58 Aligned_cols=20 Identities=20% Similarity=0.506 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHhc
Q 030524 12 LVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 12 i~l~G~~~~GKSsli~~l~~ 31 (175)
|+++|+|||||||++..+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999874
No 431
>PRK07261 topology modulation protein; Provisional
Probab=97.69 E-value=3.5e-05 Score=52.17 Aligned_cols=22 Identities=18% Similarity=0.454 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~ 32 (175)
+|+|+|++|||||||...+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998654
No 432
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.68 E-value=3.8e-05 Score=52.33 Aligned_cols=22 Identities=18% Similarity=0.543 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~ 32 (175)
+|+|+|+|||||||+...|...
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998876
No 433
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.67 E-value=0.00017 Score=46.65 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=20.9
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
-.|++.|+.|+|||||++.+...-
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 458899999999999999988753
No 434
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.66 E-value=0.00037 Score=45.14 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=21.6
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCC
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
...+++.|++|+|||++++.+....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999999988754
No 435
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.66 E-value=0.00077 Score=50.70 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=18.2
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 030524 12 LVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 12 i~l~G~~~~GKSsli~~l~~~ 32 (175)
.++.|..|+|||||+++++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 456699999999999999864
No 436
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.64 E-value=0.0006 Score=41.02 Aligned_cols=77 Identities=16% Similarity=0.186 Sum_probs=47.0
Q ss_pred EEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccccccc-ccccccCCcEEEEEEE
Q 030524 12 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-IPSYIRDSSVAVVVYD 90 (175)
Q Consensus 12 i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-~~~~~~~~d~~i~v~d 90 (175)
+++.|.+|+|||++...+...-.... .+..- ++ .+.+.|+++.-..... .......+|.++++.+
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g-~~v~~---------~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRG-KRVLL---------ID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-CeEEE---------EC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 67889999999999987765321111 11111 11 6899999985432221 1345567899999988
Q ss_pred CCChhhHHhHHHH
Q 030524 91 VASRQSFLNTSKW 103 (175)
Q Consensus 91 ~~~~~~~~~~~~~ 103 (175)
.. ..+.......
T Consensus 68 ~~-~~~~~~~~~~ 79 (99)
T cd01983 68 PE-ALAVLGARRL 79 (99)
T ss_pred Cc-hhhHHHHHHH
Confidence 65 3444444443
No 437
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.61 E-value=0.00062 Score=46.37 Aligned_cols=88 Identities=13% Similarity=0.103 Sum_probs=48.0
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEe--CC-CcccccccccccccCCcEEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD--TA-GQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D--~~-G~~~~~~~~~~~~~~~d~~i 86 (175)
=.++++|+.|+|||||++.+.+-..+.. + .+.+++..+.+..-+ .+ |+.....+.+.+..+.++++
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~-----G------~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lll 94 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNG-----D------NDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYL 94 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCC-----c------EEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 4688999999999999999887542211 1 011112111111111 33 34344445566677777766
Q ss_pred EE--EECCChhhHHhHHHHHHHHH
Q 030524 87 VV--YDVASRQSFLNTSKWIDEVR 108 (175)
Q Consensus 87 ~v--~d~~~~~~~~~~~~~~~~~~ 108 (175)
+= .+.-|+.+-+.+..++.++.
T Consensus 95 LDEPts~LD~~~~~~l~~~l~~~~ 118 (177)
T cd03222 95 FDEPSAYLDIEQRLNAARAIRRLS 118 (177)
T ss_pred EECCcccCCHHHHHHHHHHHHHHH
Confidence 62 22235555555666666554
No 438
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.60 E-value=0.00039 Score=50.49 Aligned_cols=133 Identities=18% Similarity=0.177 Sum_probs=70.7
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCC----C-----CC-c-----------ccccceeeEEEEEEE---------E-CCeEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDK----F-----DN-T-----------YQATIGIDFLSKTMY---------L-EDRTV 58 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~----~-----~~-~-----------~~~~~~~~~~~~~~~---------~-~~~~~ 58 (175)
-+++++|++|+||||++..+.... . .. . +....+++....... . ....+
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 155 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 155 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCC
Confidence 689999999999999988765421 0 00 0 000111111111000 0 11245
Q ss_pred EEEEEeCCCcccccc----cccccc--cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC
Q 030524 59 RLQLWDTAGQERFRS----LIPSYI--RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV 132 (175)
Q Consensus 59 ~~~i~D~~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~ 132 (175)
.+.++||+|...... .+..++ .+.+-.++|.|++.. .+.+......+.. -.+--++.||.|...
T Consensus 156 D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~----~~~~~~I~TKlDet~---- 225 (270)
T PRK06731 156 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD----IHIDGIVFTKFDETA---- 225 (270)
T ss_pred CEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC----CCCCEEEEEeecCCC----
Confidence 789999999653221 122222 245678999997632 2233333333322 122345669999543
Q ss_pred CHHHHHHHHHhcCCeEEEec
Q 030524 133 SIEEGEAKSRELNVMFIETS 152 (175)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~s 152 (175)
..-.+...+...+.|+..++
T Consensus 226 ~~G~~l~~~~~~~~Pi~~it 245 (270)
T PRK06731 226 SSGELLKIPAVSSAPIVLMT 245 (270)
T ss_pred CccHHHHHHHHHCcCEEEEe
Confidence 23356667777788776664
No 439
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.60 E-value=0.00045 Score=42.92 Aligned_cols=103 Identities=16% Similarity=0.152 Sum_probs=59.9
Q ss_pred EEEE-CCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEE
Q 030524 12 LVFL-GDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (175)
Q Consensus 12 i~l~-G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (175)
|.++ +..|+||||+.-.|...-.......+.-++ ...... ..+.++|+|+... ......+..+|.++++.+
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d-----~d~~~~-~D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~ 73 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVD-----LDLQFG-DDYVVVDLGRSLD--EVSLAALDQADRVFLVTQ 73 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEE-----CCCCCC-CCEEEEeCCCCcC--HHHHHHHHHcCeEEEEec
Confidence 3444 578999999876654321111011111111 000000 1689999987542 233446778999999988
Q ss_pred CCChhhHHhHHHHHHHHHHhcCC-CCcEEEEEeC
Q 030524 91 VASRQSFLNTSKWIDEVRTERGS-DVIIVLVGNK 123 (175)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~nk 123 (175)
. +..++..+..+++.+.....+ ...+.+++|+
T Consensus 74 ~-~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 74 Q-DLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred C-ChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 6 456777777777777655433 4567677775
No 440
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.59 E-value=5.8e-05 Score=53.01 Aligned_cols=22 Identities=14% Similarity=0.215 Sum_probs=18.7
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~ 32 (175)
-++++||+|||||||+|-+-+-
T Consensus 33 ~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999976543
No 441
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.59 E-value=7.4e-05 Score=42.67 Aligned_cols=21 Identities=14% Similarity=0.419 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 030524 12 LVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 12 i~l~G~~~~GKSsli~~l~~~ 32 (175)
|.+.|++|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 788999999999999988765
No 442
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.59 E-value=8.3e-05 Score=50.27 Aligned_cols=28 Identities=14% Similarity=0.172 Sum_probs=23.2
Q ss_pred CCCCceeEEEECCCCCCHHHHHHHHhcC
Q 030524 5 SALAKYKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
+.....-+.++|++|||||||+.+++..
T Consensus 2 ~~~~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 2 NKTMIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CCCCceEEEEECCCCChHHHHHHHHHHH
Confidence 3445567899999999999999998864
No 443
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.57 E-value=9.2e-05 Score=51.71 Aligned_cols=27 Identities=15% Similarity=0.158 Sum_probs=22.8
Q ss_pred CCCCceeEEEECCCCCCHHHHHHHHhc
Q 030524 5 SALAKYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 5 ~~~~~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
..+...-|+++|++|||||||++.+.+
T Consensus 2 ~~~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 2 DKPKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 345557899999999999999999875
No 444
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.56 E-value=7.2e-05 Score=51.89 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=19.6
Q ss_pred eeEEEECCCCCCHHHHHHHHhcC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
=.++++||+|||||||++.+-+-
T Consensus 29 evv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 35789999999999999987653
No 445
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.52 E-value=6.2e-05 Score=50.49 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=17.6
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~ 32 (175)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999998865
No 446
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.52 E-value=0.0013 Score=52.19 Aligned_cols=84 Identities=10% Similarity=0.012 Sum_probs=47.3
Q ss_pred cEEEEEEECCCh---hhHHhHHHHHHHHHHhcCCCC-cEEEEEeCCCCCCCCC-C-----C--HHHHHHHHHhcCCeEEE
Q 030524 83 SVAVVVYDVASR---QSFLNTSKWIDEVRTERGSDV-IIVLVGNKTDLVEKRQ-V-----S--IEEGEAKSRELNVMFIE 150 (175)
Q Consensus 83 d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~-~~iiv~nk~D~~~~~~-~-----~--~~~~~~~~~~~~~~~~~ 150 (175)
--+|+|=|+-+- ++ ...+..+..+... ... |+|+|++-+|...... . + .-.......+.++..+.
T Consensus 133 ~kvILVEDlPN~~~~~~-~~f~~~L~~~l~~--~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~ 209 (519)
T PF03215_consen 133 KKVILVEDLPNVFHRDT-SRFREALRQYLRS--SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIK 209 (519)
T ss_pred ceEEEeeccccccchhH-HHHHHHHHHHHHc--CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEE
Confidence 456677666542 22 3334444443333 234 9999999665322111 0 0 01124455667788888
Q ss_pred eccCCCCCHHHHHHHHHHH
Q 030524 151 TSAKAGFNIKLCCHTLNSL 169 (175)
Q Consensus 151 ~s~~~~~~v~~~f~~l~~~ 169 (175)
..+....-+...+..++..
T Consensus 210 FNpIa~T~mkKaL~rI~~~ 228 (519)
T PF03215_consen 210 FNPIAPTFMKKALKRILKK 228 (519)
T ss_pred ecCCCHHHHHHHHHHHHHH
Confidence 8888877777777776554
No 447
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.52 E-value=0.00019 Score=45.68 Aligned_cols=61 Identities=11% Similarity=0.079 Sum_probs=31.2
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccc
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 70 (175)
--|++-|+-|+|||||.+.++..--......+.++......-..+..-+.+.++-..+.++
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~~lg~~~~V~SPTF~l~~~Y~~~~~~l~H~DLYRl~~~~e 76 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLARALGIDEEVTSPTFSLVNEYEGGNIPLYHFDLYRLEDPEE 76 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTT--S----TTTTSEEEEEETTEEEEEEE-TT-SSTHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCCCCcCCCCeEEEEEecCCCceEEEeeccccCCHHH
Confidence 4578889999999999999877432222233333333322222222334555665555444
No 448
>PRK10646 ADP-binding protein; Provisional
Probab=97.49 E-value=0.00068 Score=44.84 Aligned_cols=58 Identities=14% Similarity=0.126 Sum_probs=34.0
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCc
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 68 (175)
-|++-|+-|+|||||.+.++..--......+.+++.....-..+..-+.+.+|-..+.
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~Lg~~~~V~SPTFtlv~~Y~~~~~~l~H~DlYRL~~~ 87 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQALGHQGNVKSPTYTLVEPYTLDNLMVYHFDLYRLADP 87 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCCCCCCCCEeeEEEeeCCCCCEEEEeeccCCCH
Confidence 4788899999999999999775322333444444433322212223455666655543
No 449
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.48 E-value=0.00011 Score=47.95 Aligned_cols=21 Identities=29% Similarity=0.699 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 030524 12 LVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 12 i~l~G~~~~GKSsli~~l~~~ 32 (175)
|+++||+|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999998864
No 450
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.48 E-value=0.00091 Score=52.48 Aligned_cols=90 Identities=8% Similarity=-0.026 Sum_probs=51.7
Q ss_pred cEEEEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHH
Q 030524 83 SVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKL 161 (175)
Q Consensus 83 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~ 161 (175)
-.+|+|=|+-+...+.....+.+.+..+.. ...|+|+++|-+-...-......-...+-.+.++..+...+....-++.
T Consensus 195 ~~liLveDLPn~~~~d~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK 274 (634)
T KOG1970|consen 195 KKLILVEDLPNQFYRDDSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKK 274 (634)
T ss_pred ceEEEeeccchhhhhhhHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHH
Confidence 346888787654433222222222222222 5688999998776543333333334444466677777777777777777
Q ss_pred HHHHHHHHHhh
Q 030524 162 CCHTLNSLITV 172 (175)
Q Consensus 162 ~f~~l~~~~~~ 172 (175)
.+..++.....
T Consensus 275 ~L~ric~~e~~ 285 (634)
T KOG1970|consen 275 FLKRICRIEAN 285 (634)
T ss_pred HHHHHHHHhcc
Confidence 77776655443
No 451
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.47 E-value=0.00012 Score=47.02 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=22.2
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFD 35 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~ 35 (175)
-.++++|++|+|||+++..+...-..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 46899999999999999999876543
No 452
>PRK14530 adenylate kinase; Provisional
Probab=97.47 E-value=0.00012 Score=51.48 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=19.8
Q ss_pred eeEEEECCCCCCHHHHHHHHhc
Q 030524 10 YKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~ 31 (175)
.+|+|+|+|||||||+.+.|..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998864
No 453
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=97.45 E-value=0.00049 Score=45.03 Aligned_cols=60 Identities=12% Similarity=0.082 Sum_probs=37.2
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcc
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 69 (175)
--|.+-|+-|+|||||.+.+...--......+.+++...........-+.+.+|-....+
T Consensus 26 ~Vv~L~GdLGAGKTtf~rgi~~~Lg~~~~V~SPTFtlv~~Y~~~~~~lyH~DlYRl~d~e 85 (149)
T COG0802 26 DVVLLSGDLGAGKTTLVRGIAKGLGVDGNVKSPTFTLVEEYEEGRLPLYHFDLYRLSDPE 85 (149)
T ss_pred CEEEEEcCCcCChHHHHHHHHHHcCCCCcccCCCeeeehhhcCCCCcEEEEeeeccCChH
Confidence 457788999999999999988754334444444444443333233445566666555433
No 454
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.45 E-value=0.00015 Score=51.45 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=22.2
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcC
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
..+.+|+|+|+|||||||+...|...
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999988654
No 455
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.43 E-value=5.2e-05 Score=56.96 Aligned_cols=59 Identities=27% Similarity=0.311 Sum_probs=0.0
Q ss_pred CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCC
Q 030524 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67 (175)
Q Consensus 5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 67 (175)
++...+.|.++|-||+||||++|+|....+... .|-.+-+..=..++.-. .+-++|+||
T Consensus 303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkv-APIpGETKVWQYItLmk---rIfLIDcPG 361 (572)
T KOG2423|consen 303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKV-APIPGETKVWQYITLMK---RIFLIDCPG 361 (572)
T ss_pred cCccceeeeeecCCCCchHHHHHHHhhcccccc-cCCCCcchHHHHHHHHh---ceeEecCCC
No 456
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.42 E-value=0.00013 Score=47.25 Aligned_cols=24 Identities=13% Similarity=0.210 Sum_probs=20.9
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
=.++|+|+.|+|||||++.+.+..
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEEccCCCccccceeeecccc
Confidence 368999999999999999888754
No 457
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.42 E-value=0.00012 Score=46.66 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 030524 12 LVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 12 i~l~G~~~~GKSsli~~l~~~ 32 (175)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999988654
No 458
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.41 E-value=0.00015 Score=49.74 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~ 32 (175)
.++|+|++|+|||||++.|...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5889999999999999998664
No 459
>PRK08233 hypothetical protein; Provisional
Probab=97.40 E-value=0.00018 Score=48.91 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=20.9
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcC
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
..-|++.|++|||||||.+.|...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 467888999999999999998764
No 460
>PRK06217 hypothetical protein; Validated
Probab=97.40 E-value=0.00015 Score=49.64 Aligned_cols=23 Identities=13% Similarity=0.237 Sum_probs=20.4
Q ss_pred eeEEEECCCCCCHHHHHHHHhcC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
.+|+|+|.+||||||+..+|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999998764
No 461
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.40 E-value=0.00071 Score=46.96 Aligned_cols=22 Identities=14% Similarity=0.291 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHhcCC
Q 030524 12 LVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 12 i~l~G~~~~GKSsli~~l~~~~ 33 (175)
|+++|++||||||+++.++...
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999887654
No 462
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.40 E-value=0.00015 Score=51.36 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 030524 12 LVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 12 i~l~G~~~~GKSsli~~l~~~ 32 (175)
++++||+|+|||||++-+.+-
T Consensus 32 vsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999987764
No 463
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.40 E-value=0.00014 Score=49.46 Aligned_cols=22 Identities=14% Similarity=0.255 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~ 32 (175)
.++++|++||||||+++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
No 464
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.40 E-value=0.00021 Score=49.96 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=22.8
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcC
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
.++..|+|.|++|||||||.+.+...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999988764
No 465
>PRK03839 putative kinase; Provisional
Probab=97.38 E-value=0.00016 Score=49.30 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.6
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~ 32 (175)
+|+++|+|||||||+...|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988654
No 466
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.37 E-value=0.00017 Score=49.09 Aligned_cols=22 Identities=23% Similarity=0.545 Sum_probs=19.9
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~ 32 (175)
-|+++|++|||||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4789999999999999999874
No 467
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.37 E-value=0.00018 Score=46.11 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 030524 12 LVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 12 i~l~G~~~~GKSsli~~l~~~ 32 (175)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999998865
No 468
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.35 E-value=0.00018 Score=49.25 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=19.2
Q ss_pred eeEEEECCCCCCHHHHHHHHhc
Q 030524 10 YKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~ 31 (175)
-.|+++|++||||||+++.+..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3578899999999999999873
No 469
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.34 E-value=0.00022 Score=50.72 Aligned_cols=26 Identities=27% Similarity=0.664 Sum_probs=22.6
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcC
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
..+++++++|++|||||+|+-.++..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 35689999999999999999888754
No 470
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.33 E-value=0.00021 Score=49.13 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=21.0
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
.=|+|+||+|||||||+++|+...
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 458899999999999999998753
No 471
>PRK14531 adenylate kinase; Provisional
Probab=97.33 E-value=0.00022 Score=48.81 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.2
Q ss_pred eeEEEECCCCCCHHHHHHHHhcC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
.+|+++|+|||||||+...+...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988653
No 472
>PRK13949 shikimate kinase; Provisional
Probab=97.33 E-value=0.00021 Score=48.34 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=19.2
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q 030524 11 KLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~ 31 (175)
+|+|+|++|+||||+...+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998765
No 473
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.32 E-value=0.00019 Score=49.70 Aligned_cols=21 Identities=19% Similarity=0.378 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 030524 12 LVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 12 i~l~G~~~~GKSsli~~l~~~ 32 (175)
|+|.|++|||||||++.+.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999988663
No 474
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.32 E-value=0.00022 Score=44.22 Aligned_cols=21 Identities=24% Similarity=0.544 Sum_probs=18.7
Q ss_pred eeEEEECCCCCCHHHHHHHHh
Q 030524 10 YKLVFLGDQSVGKTSIITRFM 30 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~ 30 (175)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 458999999999999999875
No 475
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.32 E-value=0.00039 Score=48.54 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=21.2
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcC
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
...-|+|+|++|+|||||++.|...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4566788899999999999998754
No 476
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.32 E-value=0.00041 Score=52.90 Aligned_cols=114 Identities=20% Similarity=0.276 Sum_probs=62.3
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcC----CC------CCcccc-----------cceeeEEEEEEE-----E-------
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYD----KF------DNTYQA-----------TIGIDFLSKTMY-----L------- 53 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~----~~------~~~~~~-----------~~~~~~~~~~~~-----~------- 53 (175)
..+..|+++|-.||||||..-.|... .. .+.|.| ..+++++..... +
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 35688999999999999997765431 11 112222 122333333110 0
Q ss_pred -CCeEEEEEEEeCCCcccccc-ccc-----ccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 030524 54 -EDRTVRLQLWDTAGQERFRS-LIP-----SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126 (175)
Q Consensus 54 -~~~~~~~~i~D~~G~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~ 126 (175)
....+.+.|+||+|.-.... ++. .-.-+.|=+++|.|+.-...-.+..+.+.+-.. +. -+|+||.|-
T Consensus 178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~-----it-GvIlTKlDG 251 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALG-----IT-GVILTKLDG 251 (451)
T ss_pred HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcC-----Cc-eEEEEcccC
Confidence 11235799999999433222 111 123478999999998866444444333222221 11 244578773
No 477
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.32 E-value=0.00023 Score=48.90 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=21.6
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCC
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
.-.++++|++||||||+++.+++-.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4578999999999999999988753
No 478
>PLN02200 adenylate kinase family protein
Probab=97.29 E-value=0.00035 Score=49.80 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=21.0
Q ss_pred CceeEEEECCCCCCHHHHHHHHhc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
.+..|+++|+|||||||+..+|..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998865
No 479
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.29 E-value=0.00019 Score=48.65 Aligned_cols=24 Identities=25% Similarity=0.548 Sum_probs=21.1
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
.=+++.||+|+|||||+.+|+...
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 457888999999999999999865
No 480
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.29 E-value=0.001 Score=49.22 Aligned_cols=143 Identities=18% Similarity=0.178 Sum_probs=75.2
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccc---------------------cceeeEEEEEEE-------E-----
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA---------------------TIGIDFLSKTMY-------L----- 53 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~---------------------~~~~~~~~~~~~-------~----- 53 (175)
.++.-|+++|-.|+||||-+-.|..........- -.+.+....... .
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 3578999999999999999988765321111000 011222111100 0
Q ss_pred -CCeEEEEEEEeCCCccccc-----------cccccccc-CCcEEEEEEECCChh-hHHhHHHHHHHHHHhcCCCCcEEE
Q 030524 54 -EDRTVRLQLWDTAGQERFR-----------SLIPSYIR-DSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVL 119 (175)
Q Consensus 54 -~~~~~~~~i~D~~G~~~~~-----------~~~~~~~~-~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~ii 119 (175)
...++.+.++||+|.-... ..+....+ ..|=++++.|++-+. +++..+.+ .+... +- -+
T Consensus 217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F-~eav~-----l~-Gi 289 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIF-NEAVG-----LD-GI 289 (340)
T ss_pred HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHH-HHhcC-----Cc-eE
Confidence 1134679999999932111 11122222 234478888998663 34333332 22221 22 45
Q ss_pred EEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHH
Q 030524 120 VGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLC 162 (175)
Q Consensus 120 v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~ 162 (175)
++||.|-...- --....+..+++|+..+- -|++++++
T Consensus 290 IlTKlDgtAKG----G~il~I~~~l~~PI~fiG--vGE~~~DL 326 (340)
T COG0552 290 ILTKLDGTAKG----GIILSIAYELGIPIKFIG--VGEGYDDL 326 (340)
T ss_pred EEEecccCCCc----ceeeeHHHHhCCCEEEEe--CCCChhhc
Confidence 67999943211 133456677788877774 34555544
No 481
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.28 E-value=0.00023 Score=46.55 Aligned_cols=22 Identities=23% Similarity=0.557 Sum_probs=19.6
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~ 32 (175)
.|+++|+.|+|||||+..|+..
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
No 482
>PRK14532 adenylate kinase; Provisional
Probab=97.28 E-value=0.00025 Score=48.70 Aligned_cols=22 Identities=23% Similarity=0.527 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~ 32 (175)
+|+++|+|||||||+..+|...
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998754
No 483
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.27 E-value=0.00023 Score=48.93 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~ 32 (175)
+|+++|+|||||||+...|...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988764
No 484
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.26 E-value=0.00036 Score=47.37 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=21.1
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcC
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
...-|++.|++||||||+.+.+...
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~ 30 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYER 30 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4468999999999999999987653
No 485
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.26 E-value=0.0031 Score=42.90 Aligned_cols=86 Identities=17% Similarity=0.151 Sum_probs=59.1
Q ss_pred eEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHH
Q 030524 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIE 135 (175)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~ 135 (175)
..+.+.++|+|+... ......+..+|.++++...+ ..+...+.+.++.+... +.|+.+++||+|... ....
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~-~~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~---~~~~ 161 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPT-PSGLHDLERAVELVRHF---GIPVGVVINKYDLND---EIAE 161 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCC-cccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCc---chHH
Confidence 456899999996432 23334567899999999876 44666666666655432 467889999999532 2345
Q ss_pred HHHHHHHhcCCeEEE
Q 030524 136 EGEAKSRELNVMFIE 150 (175)
Q Consensus 136 ~~~~~~~~~~~~~~~ 150 (175)
+.++++.+.+++++.
T Consensus 162 ~~~~~~~~~~~~vl~ 176 (179)
T cd03110 162 EIEDYCEEEGIPILG 176 (179)
T ss_pred HHHHHHHHcCCCeEE
Confidence 677788888887654
No 486
>PRK01889 GTPase RsgA; Reviewed
Probab=97.26 E-value=0.00038 Score=52.66 Aligned_cols=24 Identities=21% Similarity=0.560 Sum_probs=21.4
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
-+++++|.+|+|||||+|.+++..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 478999999999999999998753
No 487
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.26 E-value=0.00026 Score=49.27 Aligned_cols=23 Identities=17% Similarity=0.444 Sum_probs=20.5
Q ss_pred eeEEEECCCCCCHHHHHHHHhcC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
--|+++|++|||||||++.+.+.
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 45899999999999999998875
No 488
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.26 E-value=0.00025 Score=48.37 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 030524 12 LVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 12 i~l~G~~~~GKSsli~~l~~~ 32 (175)
|+++|+|||||||+..+|...
T Consensus 2 i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999988654
No 489
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.24 E-value=0.0019 Score=48.60 Aligned_cols=25 Identities=16% Similarity=0.372 Sum_probs=22.6
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCC
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
..+|+++|++||||||+++.+++.-
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHccc
Confidence 5789999999999999999998754
No 490
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.24 E-value=0.0003 Score=47.75 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=19.8
Q ss_pred eeEEEECCCCCCHHHHHHHHhcC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
=.++++|++|+|||||+|-+.+-
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF 48 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGF 48 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhc
Confidence 46899999999999999977653
No 491
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.23 E-value=0.00026 Score=49.94 Aligned_cols=21 Identities=19% Similarity=0.215 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 030524 12 LVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 12 i~l~G~~~~GKSsli~~l~~~ 32 (175)
|++.|++|||||||++.|.+.
T Consensus 2 igI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHH
Confidence 689999999999999988753
No 492
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.22 E-value=0.00029 Score=52.51 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHhcCC
Q 030524 12 LVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 12 i~l~G~~~~GKSsli~~l~~~~ 33 (175)
++++||+|+|||||++.+.+-.
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999987743
No 493
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.22 E-value=0.00029 Score=45.87 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~ 32 (175)
.|+++|++|+|||+|+..+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988754
No 494
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.21 E-value=0.00031 Score=49.16 Aligned_cols=21 Identities=33% Similarity=0.495 Sum_probs=19.0
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q 030524 11 KLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~ 31 (175)
+|+|+|+|||||||+..+|..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 495
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.21 E-value=0.0021 Score=47.17 Aligned_cols=107 Identities=17% Similarity=0.243 Sum_probs=60.8
Q ss_pred CCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccc-------------
Q 030524 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER------------- 70 (175)
Q Consensus 4 ~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------------- 70 (175)
+...+-.+++++|++|.|||++++++........ ... ...+.+....+|....
T Consensus 56 P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~-d~~-------------~~~~PVv~vq~P~~p~~~~~Y~~IL~~lg 121 (302)
T PF05621_consen 56 PKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQS-DED-------------AERIPVVYVQMPPEPDERRFYSAILEALG 121 (302)
T ss_pred CcccCCCceEEecCCCCcHHHHHHHHHHHCCCCC-CCC-------------CccccEEEEecCCCCChHHHHHHHHHHhC
Confidence 3445567899999999999999999998654321 111 1123455555554211
Q ss_pred -----------ccccccccccCCcEEEEEEECCCh---hhHHhHHHHHHHHHHhcC-CCCcEEEEEeCC
Q 030524 71 -----------FRSLIPSYIRDSSVAVVVYDVASR---QSFLNTSKWIDEVRTERG-SDVIIVLVGNKT 124 (175)
Q Consensus 71 -----------~~~~~~~~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~ 124 (175)
........++...+=++++|=-+. .+....+..+..++.... -.+|++.+|++-
T Consensus 122 aP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 122 APYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 111222445567777888873321 233333444444433332 579999988753
No 496
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.19 E-value=0.00038 Score=47.36 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=19.4
Q ss_pred ceeEEEECCCCCCHHHHHHHHh
Q 030524 9 KYKLVFLGDQSVGKTSIITRFM 30 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~ 30 (175)
.-.++++|+.|+|||||++.++
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3578999999999999999876
No 497
>PRK02496 adk adenylate kinase; Provisional
Probab=97.18 E-value=0.0004 Score=47.51 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.2
Q ss_pred eeEEEECCCCCCHHHHHHHHhcC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
.+|+++|+|||||||+...+...
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~ 24 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEH 24 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988653
No 498
>PRK14527 adenylate kinase; Provisional
Probab=97.17 E-value=0.00053 Score=47.25 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=20.5
Q ss_pred CceeEEEECCCCCCHHHHHHHHhc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
..-.|+++|+|||||||+...+..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999998864
No 499
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.16 E-value=0.0017 Score=48.72 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=22.9
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCC
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
...+|+++|++||||||+++.++..-
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~i 184 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhC
Confidence 36799999999999999999988754
No 500
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.16 E-value=0.00038 Score=49.94 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~ 32 (175)
-++++||.|+|||||++.+.+-
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 3689999999999999998773
Done!