Query 030524
Match_columns 175
No_of_seqs 107 out of 1674
Neff 10.6
Searched_HMMs 29240
Date Tue Mar 26 00:33:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030524.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030524hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 9E-43 3.1E-47 243.1 19.6 166 7-172 11-176 (216)
2 2a5j_A RAS-related protein RAB 100.0 4.4E-37 1.5E-41 210.9 22.6 168 6-173 18-185 (191)
3 2ew1_A RAS-related protein RAB 100.0 3.1E-37 1.1E-41 213.4 21.7 167 7-173 24-190 (201)
4 1z0f_A RAB14, member RAS oncog 100.0 3.4E-37 1.1E-41 208.8 21.4 168 5-172 11-178 (179)
5 2gf9_A RAS-related protein RAB 100.0 1.1E-36 3.8E-41 208.5 23.8 168 7-174 20-187 (189)
6 2fu5_C RAS-related protein RAB 100.0 1.7E-37 5.9E-42 211.3 19.7 167 7-173 6-172 (183)
7 2hup_A RAS-related protein RAB 100.0 2.6E-37 8.8E-42 213.7 20.5 167 7-173 27-194 (201)
8 3tkl_A RAS-related protein RAB 100.0 1.3E-36 4.4E-41 209.0 23.4 166 8-173 15-180 (196)
9 2bcg_Y Protein YP2, GTP-bindin 100.0 1.1E-36 3.9E-41 211.1 23.3 167 7-173 6-172 (206)
10 2bme_A RAB4A, RAS-related prot 100.0 8.3E-37 2.8E-41 208.3 22.1 167 7-173 8-174 (186)
11 1z08_A RAS-related protein RAB 100.0 5.2E-37 1.8E-41 206.4 20.2 166 7-172 4-169 (170)
12 1r2q_A RAS-related protein RAB 100.0 5.3E-37 1.8E-41 206.1 20.2 165 7-171 4-168 (170)
13 2efe_B Small GTP-binding prote 100.0 1.4E-36 4.7E-41 206.3 22.0 167 6-172 9-175 (181)
14 3t5g_A GTP-binding protein RHE 100.0 6.9E-37 2.4E-41 208.0 20.5 168 4-172 1-169 (181)
15 1ek0_A Protein (GTP-binding pr 100.0 7.7E-37 2.6E-41 205.3 20.3 164 8-171 2-168 (170)
16 3kkq_A RAS-related protein M-R 100.0 2.2E-36 7.4E-41 205.9 22.3 167 5-172 14-182 (183)
17 2il1_A RAB12; G-protein, GDP, 100.0 6.2E-37 2.1E-41 210.4 19.3 170 4-173 21-191 (192)
18 1zbd_A Rabphilin-3A; G protein 100.0 3E-36 1E-40 208.4 22.6 167 7-173 6-172 (203)
19 1z0j_A RAB-22, RAS-related pro 100.0 2.4E-36 8.3E-41 203.0 21.6 165 7-171 4-168 (170)
20 2g6b_A RAS-related protein RAB 100.0 4.3E-36 1.5E-40 203.7 22.6 168 6-173 7-175 (180)
21 2oil_A CATX-8, RAS-related pro 100.0 2.8E-36 9.7E-41 207.0 21.9 167 7-173 23-189 (193)
22 3tw8_B RAS-related protein RAB 100.0 5.2E-36 1.8E-40 203.3 22.9 166 7-173 7-172 (181)
23 2o52_A RAS-related protein RAB 100.0 1.3E-36 4.6E-41 210.0 20.1 167 7-173 23-189 (200)
24 3bc1_A RAS-related protein RAB 100.0 3.2E-36 1.1E-40 206.5 21.7 173 1-173 3-186 (195)
25 2y8e_A RAB-protein 6, GH09086P 100.0 1.8E-36 6.2E-41 205.2 20.0 166 7-172 12-177 (179)
26 1g16_A RAS-related protein SEC 100.0 2.2E-36 7.4E-41 203.2 20.1 165 8-173 2-166 (170)
27 1z2a_A RAS-related protein RAB 100.0 2.9E-36 1E-40 202.2 20.1 165 7-172 3-167 (168)
28 2fg5_A RAB-22B, RAS-related pr 100.0 2.1E-36 7.1E-41 207.7 19.7 166 7-172 21-186 (192)
29 3cbq_A GTP-binding protein REM 100.0 2.1E-36 7.3E-41 208.3 19.4 169 4-172 18-188 (195)
30 3dz8_A RAS-related protein RAB 100.0 2.2E-37 7.6E-42 212.3 14.5 167 8-174 22-188 (191)
31 3cpj_B GTP-binding protein YPT 100.0 3.2E-36 1.1E-40 211.3 20.6 167 7-173 11-177 (223)
32 2p5s_A RAS and EF-hand domain 100.0 1.3E-36 4.4E-41 209.8 18.2 169 5-173 24-198 (199)
33 1z06_A RAS-related protein RAB 100.0 4E-36 1.4E-40 205.7 20.1 167 6-172 17-188 (189)
34 2hxs_A RAB-26, RAS-related pro 100.0 2.1E-36 7.3E-41 204.9 18.4 168 6-173 3-174 (178)
35 3c5c_A RAS-like protein 12; GD 100.0 3.2E-36 1.1E-40 206.0 19.4 167 4-172 16-186 (187)
36 3q85_A GTP-binding protein REM 100.0 5.6E-36 1.9E-40 201.2 20.2 164 9-172 2-167 (169)
37 2fn4_A P23, RAS-related protei 100.0 7.4E-36 2.5E-40 202.5 20.9 167 6-173 6-173 (181)
38 3oes_A GTPase rhebl1; small GT 100.0 2E-36 6.8E-41 209.2 18.1 169 4-173 19-188 (201)
39 1wms_A RAB-9, RAB9, RAS-relate 100.0 1.9E-35 6.5E-40 200.0 22.4 167 6-173 4-175 (177)
40 3clv_A RAB5 protein, putative; 100.0 2.1E-35 7.2E-40 203.9 22.8 168 4-174 2-206 (208)
41 1u8z_A RAS-related protein RAL 100.0 9.8E-36 3.4E-40 199.4 20.2 165 7-172 2-167 (168)
42 2atv_A RERG, RAS-like estrogen 100.0 1E-35 3.5E-40 204.8 20.4 170 2-173 21-192 (196)
43 2atx_A Small GTP binding prote 100.0 1.2E-35 4.3E-40 204.0 20.6 169 2-172 11-193 (194)
44 1c1y_A RAS-related protein RAP 100.0 1.3E-35 4.5E-40 198.8 19.8 163 8-171 2-166 (167)
45 3q3j_B RHO-related GTP-binding 100.0 1.1E-35 3.8E-40 207.4 19.6 168 4-173 22-204 (214)
46 3ihw_A Centg3; RAS, centaurin, 100.0 3.6E-35 1.2E-39 200.4 21.5 163 4-173 15-181 (184)
47 2a9k_A RAS-related protein RAL 100.0 2.4E-35 8.2E-40 200.9 20.4 168 5-173 14-182 (187)
48 3cph_A RAS-related protein SEC 100.0 4.4E-35 1.5E-39 203.8 21.8 166 7-173 18-183 (213)
49 1ky3_A GTP-binding protein YPT 100.0 2E-35 6.8E-40 200.6 19.6 168 6-173 5-179 (182)
50 3reg_A RHO-like small GTPase; 100.0 4.8E-35 1.7E-39 201.1 21.7 166 6-173 20-189 (194)
51 1x3s_A RAS-related protein RAB 100.0 5.2E-35 1.8E-39 200.7 21.7 164 8-172 14-178 (195)
52 1kao_A RAP2A; GTP-binding prot 100.0 1.4E-35 4.9E-40 198.4 18.4 164 8-172 2-166 (167)
53 2bov_A RAla, RAS-related prote 100.0 5.4E-35 1.8E-39 202.3 21.6 167 5-172 10-177 (206)
54 1vg8_A RAS-related protein RAB 100.0 6.2E-35 2.1E-39 202.2 21.9 166 6-172 5-175 (207)
55 2nzj_A GTP-binding protein REM 100.0 4.6E-35 1.6E-39 197.7 20.7 166 7-173 2-170 (175)
56 2iwr_A Centaurin gamma 1; ANK 100.0 4.8E-35 1.6E-39 198.4 20.5 163 4-173 2-170 (178)
57 2f7s_A C25KG, RAS-related prot 100.0 1E-35 3.6E-40 207.7 17.7 167 7-173 23-200 (217)
58 3q72_A GTP-binding protein RAD 100.0 4.7E-35 1.6E-39 196.2 20.2 163 9-173 2-165 (166)
59 2yc2_C IFT27, small RAB-relate 100.0 4.7E-36 1.6E-40 207.8 14.3 167 7-173 18-193 (208)
60 2j0v_A RAC-like GTP-binding pr 100.0 2.1E-35 7.3E-40 205.5 17.7 169 2-172 2-180 (212)
61 4dsu_A GTPase KRAS, isoform 2B 100.0 2.3E-34 7.9E-39 196.5 21.7 165 7-173 2-167 (189)
62 2g3y_A GTP-binding protein GEM 100.0 1.1E-34 3.8E-39 201.7 20.5 166 7-172 35-203 (211)
63 2q3h_A RAS homolog gene family 100.0 2.1E-34 7.2E-39 198.8 21.5 167 5-173 16-196 (201)
64 1m7b_A RND3/RHOE small GTP-bin 100.0 8.6E-35 2.9E-39 198.3 18.9 165 6-172 4-183 (184)
65 3con_A GTPase NRAS; structural 100.0 5.4E-34 1.8E-38 195.1 22.7 167 5-173 17-184 (190)
66 1mh1_A RAC1; GTP-binding, GTPa 100.0 2E-34 6.9E-39 196.3 20.3 164 7-172 3-180 (186)
67 4djt_A GTP-binding nuclear pro 100.0 4.5E-35 1.5E-39 204.6 17.3 169 5-173 7-176 (218)
68 1gwn_A RHO-related GTP-binding 100.0 1.3E-34 4.3E-39 200.9 18.8 164 7-172 26-204 (205)
69 3l0i_B RAS-related protein RAB 100.0 3.5E-37 1.2E-41 212.7 5.1 167 7-173 31-197 (199)
70 2erx_A GTP-binding protein DI- 100.0 2E-34 6.8E-39 193.9 18.3 164 8-172 2-167 (172)
71 3bwd_D RAC-like GTP-binding pr 100.0 1.1E-35 3.7E-40 202.0 12.2 168 3-172 2-181 (182)
72 2j1l_A RHO-related GTP-binding 100.0 3.8E-34 1.3E-38 199.6 19.5 164 7-172 32-209 (214)
73 2ce2_X GTPase HRAS; signaling 100.0 1.3E-33 4.4E-38 188.6 21.1 163 8-172 2-165 (166)
74 2gco_A H9, RHO-related GTP-bin 100.0 1.7E-33 5.8E-38 194.5 21.1 162 8-171 24-199 (201)
75 4gzl_A RAS-related C3 botulinu 100.0 4.6E-34 1.6E-38 197.9 17.9 162 7-170 28-203 (204)
76 2fv8_A H6, RHO-related GTP-bin 100.0 1.7E-33 5.7E-38 195.4 20.7 165 7-173 23-201 (207)
77 2gf0_A GTP-binding protein DI- 100.0 8.5E-34 2.9E-38 195.3 19.0 166 5-172 4-171 (199)
78 3gj0_A GTP-binding nuclear pro 100.0 1.2E-34 3.9E-39 203.1 14.7 166 4-172 10-175 (221)
79 2cjw_A GTP-binding protein GEM 100.0 3.9E-33 1.3E-37 191.5 21.1 165 7-172 4-172 (192)
80 3t1o_A Gliding protein MGLA; G 100.0 1.4E-34 4.9E-39 198.8 13.3 164 6-173 11-193 (198)
81 4bas_A ADP-ribosylation factor 100.0 1.2E-33 4.2E-38 194.5 15.0 164 4-173 12-190 (199)
82 2f9l_A RAB11B, member RAS onco 100.0 1.2E-31 4.2E-36 184.9 22.5 165 8-172 4-168 (199)
83 1f6b_A SAR1; gtpases, N-termin 100.0 1.5E-32 5.3E-37 189.3 16.7 157 7-170 23-197 (198)
84 1m2o_B GTP-binding protein SAR 100.0 4.3E-32 1.5E-36 186.0 18.6 156 7-169 21-189 (190)
85 2h57_A ADP-ribosylation factor 100.0 4.5E-32 1.5E-36 185.7 18.5 162 7-174 19-189 (190)
86 1upt_A ARL1, ADP-ribosylation 100.0 9.4E-33 3.2E-37 185.7 14.8 159 8-173 6-170 (171)
87 1ksh_A ARF-like protein 2; sma 100.0 5.6E-32 1.9E-36 184.5 18.8 160 7-173 16-181 (186)
88 1zd9_A ADP-ribosylation factor 100.0 2.1E-33 7E-38 192.2 10.8 160 7-172 20-185 (188)
89 1oix_A RAS-related protein RAB 100.0 2.9E-31 1E-35 182.0 21.4 163 8-170 28-190 (191)
90 1r8s_A ADP-ribosylation factor 100.0 2.9E-33 9.8E-38 187.1 10.5 157 10-173 1-163 (164)
91 2b6h_A ADP-ribosylation factor 100.0 7.4E-33 2.5E-37 190.1 12.1 160 6-172 26-191 (192)
92 2h17_A ADP-ribosylation factor 100.0 3.3E-32 1.1E-36 185.1 14.8 158 5-169 17-180 (181)
93 1zj6_A ADP-ribosylation factor 100.0 8.1E-32 2.8E-36 184.0 16.1 159 7-172 14-178 (187)
94 2wkq_A NPH1-1, RAS-related C3 100.0 5.8E-31 2E-35 194.2 20.7 163 8-172 154-330 (332)
95 2x77_A ADP-ribosylation factor 100.0 1.5E-32 5.2E-37 187.8 10.8 160 7-173 20-185 (189)
96 2zej_A Dardarin, leucine-rich 100.0 1.8E-32 6E-37 187.0 10.5 163 9-172 2-178 (184)
97 1fzq_A ADP-ribosylation factor 100.0 2E-31 6.8E-36 181.3 15.1 159 7-172 14-178 (181)
98 3th5_A RAS-related C3 botulinu 100.0 2.3E-34 7.7E-39 199.2 0.0 162 7-170 28-203 (204)
99 3llu_A RAS-related GTP-binding 100.0 8.9E-32 3E-36 185.2 12.0 161 5-170 16-195 (196)
100 1moz_A ARL1, ADP-ribosylation 100.0 5.3E-31 1.8E-35 179.1 15.5 160 7-173 16-181 (183)
101 3c5h_A Glucocorticoid receptor 100.0 1.3E-31 4.6E-36 191.3 8.6 166 4-171 14-254 (255)
102 2fh5_B SR-beta, signal recogni 100.0 9.2E-31 3.1E-35 182.3 11.5 161 6-169 4-213 (214)
103 2wji_A Ferrous iron transport 100.0 6.1E-30 2.1E-34 171.5 13.9 154 8-170 2-163 (165)
104 2lkc_A Translation initiation 100.0 3.1E-29 1E-33 169.6 15.6 155 6-172 5-171 (178)
105 3o47_A ADP-ribosylation factor 100.0 1.7E-30 5.8E-35 191.7 10.0 159 7-172 163-327 (329)
106 2qu8_A Putative nucleolar GTP- 100.0 5.9E-29 2E-33 174.9 17.3 164 7-173 27-206 (228)
107 3r7w_A Gtpase1, GTP-binding pr 100.0 1.1E-29 3.8E-34 185.8 13.9 161 8-172 2-181 (307)
108 3lvq_E ARF-GAP with SH3 domain 100.0 1.9E-29 6.3E-34 195.6 13.0 160 7-173 320-485 (497)
109 1svi_A GTP-binding protein YSX 100.0 2.2E-29 7.4E-34 172.8 11.7 162 3-171 17-194 (195)
110 3r7w_B Gtpase2, GTP-binding pr 100.0 4.2E-30 1.4E-34 187.2 7.5 156 11-173 1-175 (331)
111 2wjg_A FEOB, ferrous iron tran 100.0 7.5E-29 2.6E-33 169.2 12.2 157 7-172 5-169 (188)
112 2dyk_A GTP-binding protein; GT 100.0 2.2E-28 7.6E-33 162.7 11.2 150 10-170 2-160 (161)
113 2gj8_A MNME, tRNA modification 100.0 1E-28 3.6E-33 166.6 9.7 154 8-171 3-165 (172)
114 3dpu_A RAB family protein; roc 100.0 6.8E-29 2.3E-33 193.8 9.7 164 5-172 37-208 (535)
115 2cxx_A Probable GTP-binding pr 100.0 1.2E-28 4.2E-33 168.2 9.7 155 10-173 2-185 (190)
116 3a1s_A Iron(II) transport prot 100.0 8E-28 2.7E-32 171.9 13.4 156 7-171 3-166 (258)
117 3pqc_A Probable GTP-binding pr 100.0 1.3E-27 4.4E-32 163.7 12.8 160 3-172 17-194 (195)
118 3iev_A GTP-binding protein ERA 100.0 2.6E-27 8.9E-32 173.3 14.3 164 4-171 5-181 (308)
119 3iby_A Ferrous iron transport 99.9 5.1E-28 1.7E-32 172.7 9.1 151 10-169 2-164 (256)
120 3b1v_A Ferrous iron uptake tra 99.9 7.7E-28 2.6E-32 173.0 9.5 153 9-171 3-163 (272)
121 1nrj_B SR-beta, signal recogni 99.9 2.3E-28 8E-33 170.5 5.0 147 3-158 6-170 (218)
122 3i8s_A Ferrous iron transport 99.9 9.2E-28 3.1E-32 173.0 8.1 155 8-171 2-168 (274)
123 3k53_A Ferrous iron transport 99.9 1.3E-26 4.5E-31 166.8 12.0 157 8-172 2-166 (271)
124 4dhe_A Probable GTP-binding pr 99.9 3.5E-27 1.2E-31 165.0 8.6 165 4-172 24-211 (223)
125 3gee_A MNME, tRNA modification 99.9 1.8E-25 6.2E-30 171.5 13.4 156 9-171 233-397 (476)
126 2hjg_A GTP-binding protein ENG 99.9 1.2E-25 4.1E-30 171.6 11.4 160 7-172 173-349 (436)
127 2e87_A Hypothetical protein PH 99.9 1.3E-24 4.6E-29 161.9 16.8 161 7-172 165-336 (357)
128 3qq5_A Small GTP-binding prote 99.9 2.7E-26 9.4E-31 173.5 7.6 158 5-171 30-195 (423)
129 1wf3_A GTP-binding protein; GT 99.9 4.9E-25 1.7E-29 160.6 13.2 155 7-170 5-171 (301)
130 4dcu_A GTP-binding protein ENG 99.9 4.7E-25 1.6E-29 169.2 11.7 160 7-172 193-369 (456)
131 1s0u_A EIF-2-gamma, translatio 99.9 1.2E-23 4.1E-28 159.3 17.9 167 3-171 2-197 (408)
132 3sjy_A Translation initiation 99.9 7.4E-24 2.5E-28 160.2 16.1 165 4-171 3-191 (403)
133 1lnz_A SPO0B-associated GTP-bi 99.9 6.8E-25 2.3E-29 162.0 8.8 158 10-172 159-330 (342)
134 1cip_A Protein (guanine nucleo 99.9 4.4E-24 1.5E-28 158.2 13.0 116 57-172 192-344 (353)
135 1xzp_A Probable tRNA modificat 99.9 3.3E-24 1.1E-28 164.6 11.5 152 9-171 243-404 (482)
136 3lxx_A GTPase IMAP family memb 99.9 4.1E-24 1.4E-28 151.2 10.7 164 5-172 25-214 (239)
137 3ohm_A Guanine nucleotide-bind 99.9 9.2E-24 3.2E-28 154.5 12.8 117 57-173 166-319 (327)
138 1wb1_A Translation elongation 99.9 7.8E-24 2.7E-28 163.1 13.0 158 5-171 15-188 (482)
139 1mky_A Probable GTP-binding pr 99.9 1.6E-23 5.6E-28 159.9 13.8 152 10-171 2-165 (439)
140 3j2k_7 ERF3, eukaryotic polype 99.9 1.5E-23 5.3E-28 159.9 12.8 157 6-164 14-217 (439)
141 2ywe_A GTP-binding protein LEP 99.9 3.5E-23 1.2E-27 162.1 14.8 160 7-172 4-184 (600)
142 3cb4_D GTP-binding protein LEP 99.9 2.7E-23 9.4E-28 163.0 14.0 159 8-172 3-182 (599)
143 2xtp_A GTPase IMAP family memb 99.9 2.2E-23 7.4E-28 149.2 12.3 163 6-172 19-208 (260)
144 3lxw_A GTPase IMAP family memb 99.9 1.6E-23 5.4E-28 148.8 10.7 163 6-172 18-208 (247)
145 3geh_A MNME, tRNA modification 99.9 4.7E-24 1.6E-28 163.1 8.3 152 9-172 224-384 (462)
146 3t5d_A Septin-7; GTP-binding p 99.9 3.8E-24 1.3E-28 154.2 7.3 164 3-170 2-202 (274)
147 2xtz_A Guanine nucleotide-bind 99.9 5.5E-23 1.9E-27 152.3 13.4 117 56-172 181-345 (354)
148 1kk1_A EIF2gamma; initiation o 99.9 5E-23 1.7E-27 156.0 13.5 164 6-171 7-199 (410)
149 1ega_A Protein (GTP-binding pr 99.9 8.5E-23 2.9E-27 148.9 14.3 158 6-170 5-173 (301)
150 3izy_P Translation initiation 99.9 1.6E-25 5.5E-30 173.3 -0.4 159 8-171 3-167 (537)
151 2qtf_A Protein HFLX, GTP-bindi 99.9 1.6E-22 5.4E-27 150.7 15.4 161 9-172 178-354 (364)
152 1zcb_A G alpha I/13; GTP-bindi 99.9 1.3E-22 4.5E-27 150.8 14.7 116 57-172 200-353 (362)
153 2qag_A Septin-2, protein NEDD5 99.9 2.5E-24 8.4E-29 160.5 5.2 161 8-174 36-235 (361)
154 2ged_A SR-beta, signal recogni 99.9 1.4E-23 4.9E-28 143.5 8.2 116 7-131 46-173 (193)
155 3p26_A Elongation factor 1 alp 99.9 6.9E-24 2.4E-28 163.7 7.4 153 8-161 32-227 (483)
156 2hjg_A GTP-binding protein ENG 99.9 2.1E-23 7E-28 159.3 7.7 152 9-171 3-164 (436)
157 1jny_A EF-1-alpha, elongation 99.9 3.3E-24 1.1E-28 163.5 3.3 159 5-164 2-205 (435)
158 1mky_A Probable GTP-binding pr 99.9 4.3E-22 1.5E-26 152.1 14.7 159 8-172 179-355 (439)
159 4fid_A G protein alpha subunit 99.9 6.4E-23 2.2E-27 150.6 9.7 117 56-172 159-328 (340)
160 1zun_B Sulfate adenylate trans 99.9 4.4E-23 1.5E-27 157.3 8.9 153 7-163 22-215 (434)
161 1g7s_A Translation initiation 99.9 4.8E-22 1.6E-26 156.0 14.1 158 7-171 3-217 (594)
162 1d2e_A Elongation factor TU (E 99.9 7.7E-23 2.6E-27 154.4 9.1 160 8-171 2-194 (397)
163 2elf_A Protein translation elo 99.9 1.1E-22 3.7E-27 151.9 9.1 145 11-171 23-179 (370)
164 2c78_A Elongation factor TU-A; 99.9 2.8E-23 9.5E-28 157.2 5.8 162 5-170 7-210 (405)
165 1r5b_A Eukaryotic peptide chai 99.9 2.4E-23 8.1E-28 160.0 4.8 155 7-163 41-243 (467)
166 3tr5_A RF-3, peptide chain rel 99.9 2.6E-22 9E-27 155.8 10.1 115 8-128 12-148 (528)
167 1zo1_I IF2, translation initia 99.9 2.9E-24 1E-28 165.1 -0.9 157 7-169 2-164 (501)
168 3izq_1 HBS1P, elongation facto 99.9 5.3E-23 1.8E-27 162.2 6.0 154 7-162 165-362 (611)
169 4dcu_A GTP-binding protein ENG 99.9 1E-22 3.5E-27 156.2 6.0 155 7-171 21-184 (456)
170 1f60_A Elongation factor EEF1A 99.9 7.6E-23 2.6E-27 156.8 3.5 152 6-162 4-202 (458)
171 3avx_A Elongation factor TS, e 99.9 9.6E-22 3.3E-26 161.5 8.7 161 6-170 293-484 (1289)
172 2aka_B Dynamin-1; fusion prote 99.9 5.3E-22 1.8E-26 144.5 5.7 160 6-169 23-250 (299)
173 3mca_A HBS1, elongation factor 99.8 1.1E-22 3.6E-27 160.1 1.2 150 6-160 174-371 (592)
174 3def_A T7I23.11 protein; chlor 99.8 3.6E-20 1.2E-24 132.6 13.7 124 7-133 34-170 (262)
175 1pui_A ENGB, probable GTP-bind 99.8 8.3E-21 2.8E-25 131.4 9.8 158 6-172 23-199 (210)
176 2dy1_A Elongation factor G; tr 99.8 1.9E-20 6.5E-25 149.2 12.2 123 1-127 1-139 (665)
177 1udx_A The GTP-binding protein 99.8 1.2E-19 4E-24 137.0 12.7 158 10-172 158-325 (416)
178 2qnr_A Septin-2, protein NEDD5 99.8 2.3E-21 7.9E-26 141.2 3.1 161 8-173 17-215 (301)
179 2h5e_A Peptide chain release f 99.8 1.7E-19 5.9E-24 140.1 11.8 117 8-128 12-148 (529)
180 1azs_C GS-alpha; complex (lyas 99.8 2.2E-19 7.4E-24 134.6 11.6 122 49-172 210-385 (402)
181 3t34_A Dynamin-related protein 99.8 1.9E-20 6.4E-25 139.8 5.8 154 9-165 34-254 (360)
182 2j69_A Bacterial dynamin-like 99.8 3.3E-19 1.1E-23 142.6 13.2 161 8-171 68-324 (695)
183 1h65_A Chloroplast outer envel 99.8 1.6E-19 5.6E-24 129.7 10.3 124 7-133 37-173 (270)
184 1u0l_A Probable GTPase ENGC; p 99.8 1.9E-20 6.5E-25 136.5 5.2 135 24-169 32-170 (301)
185 1dar_A EF-G, elongation factor 99.8 2.2E-19 7.7E-24 143.5 10.8 116 7-128 10-143 (691)
186 1jwy_B Dynamin A GTPase domain 99.8 3.3E-19 1.1E-23 130.7 10.7 111 58-171 131-261 (315)
187 2qag_C Septin-7; cell cycle, c 99.8 1.2E-19 4.2E-24 137.0 8.5 159 8-170 30-225 (418)
188 2rdo_7 EF-G, elongation factor 99.8 7E-18 2.4E-22 135.1 16.4 118 7-128 8-148 (704)
189 2xex_A Elongation factor G; GT 99.8 2.2E-18 7.7E-23 137.8 12.0 118 5-128 6-141 (693)
190 1wxq_A GTP-binding protein; st 99.8 6.8E-19 2.3E-23 132.5 7.2 85 10-94 1-114 (397)
191 2wsm_A Hydrogenase expression/ 99.7 8.6E-18 2.9E-22 117.2 8.1 154 8-172 29-214 (221)
192 2x2e_A Dynamin-1; nitration, h 99.7 1.3E-18 4.6E-23 129.4 3.2 159 7-168 29-254 (353)
193 2hf9_A Probable hydrogenase ni 99.7 1.9E-19 6.7E-24 125.9 -2.8 154 8-172 37-224 (226)
194 3p32_A Probable GTPase RV1496/ 99.7 7.7E-18 2.6E-22 125.4 4.1 103 58-171 172-283 (355)
195 3vqt_A RF-3, peptide chain rel 99.7 7.3E-16 2.5E-20 120.3 15.1 114 8-127 30-165 (548)
196 1n0u_A EF-2, elongation factor 99.7 6.1E-17 2.1E-21 132.0 9.0 117 7-127 17-163 (842)
197 1jal_A YCHF protein; nucleotid 99.7 9.4E-16 3.2E-20 113.6 14.3 146 9-154 2-239 (363)
198 2qpt_A EH domain-containing pr 99.7 5.5E-17 1.9E-21 126.7 5.9 120 7-129 63-233 (550)
199 2dby_A GTP-binding protein; GD 99.6 1.5E-15 5.2E-20 113.0 9.1 154 10-165 2-255 (368)
200 2www_A Methylmalonic aciduria 99.6 2.3E-15 7.9E-20 111.7 9.3 101 58-170 167-277 (349)
201 1yrb_A ATP(GTP)binding protein 99.6 7.6E-15 2.6E-19 104.7 9.8 110 58-172 109-257 (262)
202 4a9a_A Ribosome-interacting GT 99.6 5E-14 1.7E-18 104.9 13.6 153 9-164 72-240 (376)
203 2p67_A LAO/AO transport system 99.6 6.8E-16 2.3E-20 114.3 3.5 103 58-171 149-260 (341)
204 3j25_A Tetracycline resistance 99.6 5E-16 1.7E-20 123.3 2.9 114 10-127 3-132 (638)
205 2yv5_A YJEQ protein; hydrolase 99.6 8.9E-15 3E-19 106.6 9.1 111 55-168 47-165 (302)
206 4fn5_A EF-G 1, elongation fact 99.6 5.5E-14 1.9E-18 113.0 14.4 116 8-127 12-150 (709)
207 3zvr_A Dynamin-1; hydrolase, D 99.5 1.9E-14 6.5E-19 115.3 8.0 158 8-169 50-275 (772)
208 3l82_B F-box only protein 4; T 99.5 2.4E-14 8.4E-19 97.5 5.8 104 66-172 110-223 (227)
209 2qm8_A GTPase/ATPase; G protei 99.5 7E-14 2.4E-18 103.3 7.6 103 58-171 148-260 (337)
210 2ohf_A Protein OLA1, GTP-bindi 99.4 1.5E-13 5.2E-18 102.8 5.6 88 8-95 21-130 (396)
211 3l2o_B F-box only protein 4; s 99.4 3.2E-13 1.1E-17 96.3 4.9 105 65-172 194-308 (312)
212 1ni3_A YCHF GTPase, YCHF GTP-b 99.4 2.9E-11 1E-15 90.6 14.5 86 8-93 19-127 (392)
213 2qag_B Septin-6, protein NEDD5 99.1 2.3E-10 8E-15 86.4 7.4 139 10-153 43-217 (427)
214 3h2y_A GTPase family protein; 99.1 2.4E-10 8.1E-15 85.4 6.9 96 67-169 55-157 (368)
215 2j37_W Signal recognition part 99.0 1E-10 3.5E-15 90.3 3.5 151 8-169 100-310 (504)
216 3ec1_A YQEH GTPase; atnos1, at 99.0 2.1E-11 7.1E-16 91.1 -0.8 138 9-156 162-315 (369)
217 3h2y_A GTPase family protein; 98.9 5.1E-11 1.8E-15 88.9 -1.6 131 9-147 160-305 (368)
218 1puj_A YLQF, conserved hypothe 98.9 1.3E-09 4.4E-14 78.5 5.5 100 62-171 3-105 (282)
219 3sop_A Neuronal-specific septi 98.9 5.3E-09 1.8E-13 74.9 8.7 137 9-150 2-178 (270)
220 3ec1_A YQEH GTPase; atnos1, at 98.9 6.3E-10 2.2E-14 83.1 3.9 97 67-170 57-160 (369)
221 1tq4_A IIGP1, interferon-induc 98.9 3.2E-08 1.1E-12 74.7 12.0 156 9-171 69-252 (413)
222 1puj_A YLQF, conserved hypothe 98.7 2E-08 6.9E-13 72.3 5.1 57 7-68 118-175 (282)
223 3cnl_A YLQF, putative uncharac 98.6 1E-08 3.6E-13 73.0 2.8 57 10-70 100-156 (262)
224 3dm5_A SRP54, signal recogniti 98.6 3.5E-08 1.2E-12 74.9 3.8 141 8-160 99-279 (443)
225 2v3c_C SRP54, signal recogniti 98.5 6.7E-07 2.3E-11 68.0 8.5 84 57-151 180-271 (432)
226 3cnl_A YLQF, putative uncharac 98.4 7.1E-08 2.4E-12 68.7 2.6 93 65-168 4-97 (262)
227 1f5n_A Interferon-induced guan 98.4 3E-07 1E-11 72.3 5.6 62 8-69 37-102 (592)
228 3kl4_A SRP54, signal recogniti 98.3 3E-07 1E-11 69.8 3.9 91 57-159 179-277 (433)
229 1t9h_A YLOQ, probable GTPase E 98.3 2.3E-07 8E-12 67.4 2.4 91 72-165 77-170 (307)
230 1j8m_F SRP54, signal recogniti 98.2 3.2E-06 1.1E-10 61.3 6.4 91 58-161 181-280 (297)
231 3szr_A Interferon-induced GTP- 98.2 3.1E-06 1.1E-10 67.1 6.8 24 10-33 46-69 (608)
232 1bif_A 6-phosphofructo-2-kinas 98.1 8.1E-08 2.8E-12 73.9 -3.0 101 8-110 38-148 (469)
233 2rcn_A Probable GTPase ENGC; Y 98.0 1.9E-05 6.6E-10 58.5 7.9 85 78-166 127-213 (358)
234 3q5d_A Atlastin-1; G protein, 97.9 1.7E-05 5.8E-10 60.5 5.9 25 8-32 66-90 (447)
235 1zp6_A Hypothetical protein AT 97.8 1.3E-05 4.6E-10 53.9 3.6 28 5-32 5-32 (191)
236 1kgd_A CASK, peripheral plasma 97.7 1.9E-05 6.5E-10 52.8 3.1 23 10-32 6-28 (180)
237 1ye8_A Protein THEP1, hypothet 97.7 2.1E-05 7.2E-10 52.6 3.2 22 11-32 2-23 (178)
238 3ney_A 55 kDa erythrocyte memb 97.7 3.2E-05 1.1E-09 52.6 3.7 28 5-32 15-42 (197)
239 1lvg_A Guanylate kinase, GMP k 97.7 2.5E-05 8.5E-10 53.1 3.1 23 10-32 5-27 (198)
240 3asz_A Uridine kinase; cytidin 97.6 3.6E-05 1.2E-09 52.6 3.1 26 6-31 3-28 (211)
241 3tr0_A Guanylate kinase, GMP k 97.6 3.7E-05 1.3E-09 52.2 3.0 23 10-32 8-30 (205)
242 2j41_A Guanylate kinase; GMP, 97.6 4.6E-05 1.6E-09 51.8 3.4 26 8-33 5-30 (207)
243 4eun_A Thermoresistant glucoki 97.6 4.5E-05 1.6E-09 51.8 3.3 25 7-31 27-51 (200)
244 3a00_A Guanylate kinase, GMP k 97.6 3.9E-05 1.3E-09 51.5 3.0 22 11-32 3-24 (186)
245 1y63_A LMAJ004144AAA protein; 97.5 6.8E-05 2.3E-09 50.3 3.8 29 4-32 5-33 (184)
246 4gp7_A Metallophosphoesterase; 97.5 5.2E-05 1.8E-09 50.3 2.9 20 11-30 11-30 (171)
247 3iij_A Coilin-interacting nucl 97.5 7.7E-05 2.6E-09 49.7 3.7 25 7-31 9-33 (180)
248 1s96_A Guanylate kinase, GMP k 97.5 5.8E-05 2E-09 52.2 3.0 24 10-33 17-40 (219)
249 3tau_A Guanylate kinase, GMP k 97.5 5.8E-05 2E-09 51.7 3.0 24 10-33 9-32 (208)
250 1nn5_A Similar to deoxythymidy 97.5 6.4E-05 2.2E-09 51.4 3.2 29 3-31 3-31 (215)
251 1ex7_A Guanylate kinase; subst 97.5 6.6E-05 2.3E-09 50.6 3.2 21 12-32 4-24 (186)
252 1z6g_A Guanylate kinase; struc 97.5 5.8E-05 2E-09 52.1 3.0 24 10-33 24-47 (218)
253 2xxa_A Signal recognition part 97.5 0.00041 1.4E-08 52.8 7.9 84 57-151 183-273 (433)
254 1znw_A Guanylate kinase, GMP k 97.5 6.1E-05 2.1E-09 51.5 3.0 24 10-33 21-44 (207)
255 1via_A Shikimate kinase; struc 97.5 7.4E-05 2.5E-09 49.6 3.2 21 11-31 6-26 (175)
256 2yv5_A YJEQ protein; hydrolase 97.5 0.00027 9.3E-09 51.2 6.4 21 10-30 166-186 (302)
257 2qor_A Guanylate kinase; phosp 97.5 7.2E-05 2.4E-09 51.0 3.0 24 9-32 12-35 (204)
258 3c8u_A Fructokinase; YP_612366 97.4 8.4E-05 2.9E-09 50.8 3.3 24 8-31 21-44 (208)
259 1ly1_A Polynucleotide kinase; 97.4 0.0001 3.5E-09 48.9 3.6 22 10-31 3-24 (181)
260 1kag_A SKI, shikimate kinase I 97.4 8E-05 2.8E-09 49.2 3.0 23 10-32 5-27 (173)
261 1knq_A Gluconate kinase; ALFA/ 97.4 0.00012 4.2E-09 48.4 3.9 23 9-31 8-30 (175)
262 3lw7_A Adenylate kinase relate 97.4 9.2E-05 3.1E-09 48.7 3.2 20 10-29 2-21 (179)
263 1qf9_A UMP/CMP kinase, protein 97.4 0.00012 4.1E-09 49.0 3.7 24 8-31 5-28 (194)
264 2rcn_A Probable GTPase ENGC; Y 97.4 0.0001 3.6E-09 54.6 3.4 24 11-34 217-240 (358)
265 3kb2_A SPBC2 prophage-derived 97.4 9.7E-05 3.3E-09 48.6 2.9 22 11-32 3-24 (173)
266 2bdt_A BH3686; alpha-beta prot 97.4 0.0001 3.4E-09 49.5 3.0 21 11-31 4-24 (189)
267 3tif_A Uncharacterized ABC tra 97.4 0.00011 3.7E-09 51.4 3.1 23 11-33 33-55 (235)
268 2cdn_A Adenylate kinase; phosp 97.4 0.00016 5.5E-09 49.0 3.8 26 6-31 17-42 (201)
269 2bbw_A Adenylate kinase 4, AK4 97.3 0.00014 4.7E-09 51.1 3.4 22 9-30 27-48 (246)
270 3fb4_A Adenylate kinase; psych 97.3 0.00014 4.8E-09 49.8 3.2 21 11-31 2-22 (216)
271 1uf9_A TT1252 protein; P-loop, 97.3 0.00015 5.2E-09 49.0 3.4 31 1-32 1-31 (203)
272 1ukz_A Uridylate kinase; trans 97.3 0.00025 8.7E-09 48.0 4.4 25 7-31 13-37 (203)
273 1htw_A HI0065; nucleotide-bind 97.3 0.00014 4.9E-09 47.6 3.0 24 10-33 34-57 (158)
274 3dl0_A Adenylate kinase; phosp 97.3 0.00015 5.1E-09 49.7 3.2 21 11-31 2-22 (216)
275 2i3b_A HCR-ntpase, human cance 97.3 0.00015 5E-09 49.0 3.1 22 11-32 3-24 (189)
276 1cke_A CK, MSSA, protein (cyti 97.3 0.00016 5.6E-09 49.8 3.2 22 10-31 6-27 (227)
277 3t61_A Gluconokinase; PSI-biol 97.3 0.00015 5.2E-09 49.2 3.0 22 10-31 19-40 (202)
278 2pcj_A ABC transporter, lipopr 97.3 0.00014 4.7E-09 50.5 2.8 23 11-33 32-54 (224)
279 1tev_A UMP-CMP kinase; ploop, 97.3 0.0002 6.9E-09 48.0 3.6 23 9-31 3-25 (196)
280 2onk_A Molybdate/tungstate ABC 97.3 0.00017 5.8E-09 50.6 3.2 23 11-33 26-48 (240)
281 2eyu_A Twitching motility prot 97.3 0.00015 5.2E-09 51.5 3.0 23 10-32 26-48 (261)
282 3vaa_A Shikimate kinase, SK; s 97.3 0.00018 6E-09 48.8 3.2 22 10-31 26-47 (199)
283 1qhx_A CPT, protein (chloramph 97.3 0.00022 7.4E-09 47.3 3.6 23 10-32 4-26 (178)
284 1kht_A Adenylate kinase; phosp 97.3 0.00019 6.4E-09 48.0 3.3 22 10-31 4-25 (192)
285 3cm0_A Adenylate kinase; ATP-b 97.3 0.00023 7.7E-09 47.5 3.6 23 9-31 4-26 (186)
286 3sr0_A Adenylate kinase; phosp 97.3 0.00018 6.2E-09 49.2 3.2 22 11-32 2-23 (206)
287 1sgw_A Putative ABC transporte 97.3 0.00018 6.2E-09 49.5 3.2 23 11-33 37-59 (214)
288 3tlx_A Adenylate kinase 2; str 97.3 0.00022 7.5E-09 50.0 3.7 24 8-31 28-51 (243)
289 3umf_A Adenylate kinase; rossm 97.2 0.00029 9.8E-09 48.6 4.1 22 11-32 31-52 (217)
290 2cbz_A Multidrug resistance-as 97.2 0.00019 6.5E-09 50.2 3.3 23 11-33 33-55 (237)
291 1u0l_A Probable GTPase ENGC; p 97.2 0.00021 7.3E-09 51.8 3.6 24 10-33 170-193 (301)
292 1aky_A Adenylate kinase; ATP:A 97.2 0.0002 6.8E-09 49.3 3.4 23 9-31 4-26 (220)
293 1jjv_A Dephospho-COA kinase; P 97.2 0.00022 7.4E-09 48.5 3.5 22 10-31 3-24 (206)
294 2v9p_A Replication protein E1; 97.2 0.00017 5.9E-09 52.3 3.1 22 10-31 127-148 (305)
295 3gfo_A Cobalt import ATP-bindi 97.2 0.00018 6.1E-09 51.5 3.2 23 11-33 36-58 (275)
296 1b0u_A Histidine permease; ABC 97.2 0.00018 6.3E-09 51.1 3.2 23 11-33 34-56 (262)
297 3ec2_A DNA replication protein 97.2 0.00016 5.4E-09 48.2 2.7 24 9-32 38-61 (180)
298 4g1u_C Hemin import ATP-bindin 97.2 0.00019 6.5E-09 51.1 3.2 23 11-33 39-61 (266)
299 1t9h_A YLOQ, probable GTPase E 97.2 5.3E-05 1.8E-09 55.0 0.3 24 10-33 174-197 (307)
300 1np6_A Molybdopterin-guanine d 97.2 0.0002 6.8E-09 47.7 3.0 23 10-32 7-29 (174)
301 2rhm_A Putative kinase; P-loop 97.2 0.00022 7.5E-09 47.8 3.3 23 9-31 5-27 (193)
302 1g6h_A High-affinity branched- 97.2 0.0002 6.8E-09 50.7 3.1 23 11-33 35-57 (257)
303 3uie_A Adenylyl-sulfate kinase 97.2 0.0002 6.7E-09 48.6 3.0 25 8-32 24-48 (200)
304 2plr_A DTMP kinase, probable t 97.2 0.00029 9.8E-09 47.9 3.8 23 9-31 4-26 (213)
305 1uj2_A Uridine-cytidine kinase 97.2 0.00024 8.3E-09 50.0 3.5 28 4-31 17-44 (252)
306 3lnc_A Guanylate kinase, GMP k 97.2 0.00011 3.9E-09 50.9 1.8 23 10-32 28-51 (231)
307 2pze_A Cystic fibrosis transme 97.2 0.00021 7.3E-09 49.7 3.2 23 11-33 36-58 (229)
308 2if2_A Dephospho-COA kinase; a 97.2 0.00019 6.4E-09 48.7 2.8 22 10-31 2-23 (204)
309 2ff7_A Alpha-hemolysin translo 97.2 0.00022 7.6E-09 50.2 3.3 23 11-33 37-59 (247)
310 1mv5_A LMRA, multidrug resista 97.2 0.00032 1.1E-08 49.2 4.1 23 11-33 30-52 (243)
311 1gvn_B Zeta; postsegregational 97.2 0.00025 8.6E-09 51.0 3.6 25 7-31 31-55 (287)
312 2olj_A Amino acid ABC transpor 97.2 0.00022 7.5E-09 50.7 3.2 23 11-33 52-74 (263)
313 3aez_A Pantothenate kinase; tr 97.2 0.0003 1E-08 51.3 3.9 25 7-31 88-112 (312)
314 1nks_A Adenylate kinase; therm 97.2 0.00021 7.2E-09 47.8 3.0 21 11-31 3-23 (194)
315 2jaq_A Deoxyguanosine kinase; 97.2 0.00023 8E-09 48.1 3.2 21 11-31 2-22 (205)
316 1vpl_A ABC transporter, ATP-bi 97.2 0.00023 7.8E-09 50.4 3.2 23 11-33 43-65 (256)
317 1ji0_A ABC transporter; ATP bi 97.2 0.00023 7.8E-09 49.9 3.1 23 11-33 34-56 (240)
318 3trf_A Shikimate kinase, SK; a 97.2 0.00026 8.8E-09 47.2 3.2 22 10-31 6-27 (185)
319 2qi9_C Vitamin B12 import ATP- 97.2 0.00024 8.2E-09 50.1 3.2 23 11-33 28-50 (249)
320 1zd8_A GTP:AMP phosphotransfer 97.2 0.00024 8E-09 49.2 3.0 23 9-31 7-29 (227)
321 2ghi_A Transport protein; mult 97.2 0.00026 8.9E-09 50.2 3.3 23 11-33 48-70 (260)
322 2qt1_A Nicotinamide riboside k 97.2 0.00035 1.2E-08 47.5 3.8 25 8-32 20-44 (207)
323 2d2e_A SUFC protein; ABC-ATPas 97.2 0.00026 8.9E-09 49.9 3.2 22 11-32 31-52 (250)
324 3tqc_A Pantothenate kinase; bi 97.1 0.00036 1.2E-08 51.0 3.9 25 7-31 90-114 (321)
325 2ixe_A Antigen peptide transpo 97.1 0.00026 8.9E-09 50.5 3.1 23 11-33 47-69 (271)
326 2v54_A DTMP kinase, thymidylat 97.1 0.00035 1.2E-08 47.3 3.6 24 9-32 4-27 (204)
327 2ehv_A Hypothetical protein PH 97.1 0.00027 9.3E-09 49.3 3.2 20 11-30 32-51 (251)
328 1zak_A Adenylate kinase; ATP:A 97.1 0.00026 9E-09 48.7 3.1 24 8-31 4-27 (222)
329 2zu0_C Probable ATP-dependent 97.1 0.00028 9.5E-09 50.3 3.2 22 11-32 48-69 (267)
330 2ihy_A ABC transporter, ATP-bi 97.1 0.0003 1E-08 50.5 3.3 23 11-33 49-71 (279)
331 2wwf_A Thymidilate kinase, put 97.1 0.00031 1.1E-08 47.8 3.3 24 8-31 9-32 (212)
332 2nq2_C Hypothetical ABC transp 97.1 0.00028 9.5E-09 49.9 3.1 23 11-33 33-55 (253)
333 1e4v_A Adenylate kinase; trans 97.1 0.00026 9E-09 48.5 2.9 21 11-31 2-22 (214)
334 2yvu_A Probable adenylyl-sulfa 97.1 0.00044 1.5E-08 46.2 4.0 24 8-31 12-35 (186)
335 2jeo_A Uridine-cytidine kinase 97.1 0.00036 1.2E-08 48.9 3.6 24 8-31 24-47 (245)
336 3b85_A Phosphate starvation-in 97.1 0.00018 6.3E-09 49.3 2.0 22 11-32 24-45 (208)
337 2yz2_A Putative ABC transporte 97.1 0.00029 1E-08 50.1 3.1 23 11-33 35-57 (266)
338 4a74_A DNA repair and recombin 97.1 0.00025 8.5E-09 48.9 2.6 22 11-32 27-48 (231)
339 1odf_A YGR205W, hypothetical 3 97.1 0.00043 1.5E-08 49.9 3.9 25 7-31 29-53 (290)
340 2c95_A Adenylate kinase 1; tra 97.1 0.00034 1.2E-08 47.0 3.2 23 9-31 9-31 (196)
341 2pjz_A Hypothetical protein ST 97.1 0.00037 1.3E-08 49.5 3.3 23 11-33 32-54 (263)
342 2p5t_B PEZT; postsegregational 97.1 0.00031 1.1E-08 49.5 2.9 26 6-31 29-54 (253)
343 3jvv_A Twitching mobility prot 97.1 0.00032 1.1E-08 52.1 3.0 22 11-32 125-146 (356)
344 2f1r_A Molybdopterin-guanine d 97.1 0.00014 4.9E-09 48.2 1.0 22 11-32 4-25 (171)
345 2pt5_A Shikimate kinase, SK; a 97.0 0.00043 1.5E-08 45.3 3.3 21 11-31 2-22 (168)
346 3nh6_A ATP-binding cassette SU 97.0 0.00025 8.4E-09 51.5 2.2 24 10-33 81-104 (306)
347 2xb4_A Adenylate kinase; ATP-b 97.0 0.00044 1.5E-08 47.8 3.3 21 11-31 2-22 (223)
348 2ze6_A Isopentenyl transferase 97.0 0.00039 1.3E-08 49.1 3.1 21 11-31 3-23 (253)
349 1lw7_A Transcriptional regulat 97.0 0.00034 1.2E-08 52.0 2.7 25 9-33 170-194 (365)
350 2kjq_A DNAA-related protein; s 97.0 0.00024 8E-09 46.1 1.7 23 10-32 37-59 (149)
351 1xjc_A MOBB protein homolog; s 97.0 0.00046 1.6E-08 45.7 3.1 22 10-31 5-26 (169)
352 2x8a_A Nuclear valosin-contain 97.0 0.00041 1.4E-08 49.6 3.0 22 11-32 46-67 (274)
353 2bwj_A Adenylate kinase 5; pho 97.0 0.00044 1.5E-08 46.6 3.0 23 9-31 12-34 (199)
354 2z0h_A DTMP kinase, thymidylat 97.0 0.00046 1.6E-08 46.4 3.1 21 11-31 2-22 (197)
355 1ixz_A ATP-dependent metallopr 97.0 0.00045 1.6E-08 48.5 3.1 22 11-32 51-72 (254)
356 1rz3_A Hypothetical protein rb 97.0 0.00059 2E-08 46.3 3.5 24 8-31 21-44 (201)
357 1e6c_A Shikimate kinase; phosp 97.0 0.00052 1.8E-08 45.1 3.1 21 11-31 4-24 (173)
358 3fvq_A Fe(3+) IONS import ATP- 97.0 0.00041 1.4E-08 51.4 2.8 23 11-33 32-54 (359)
359 2ewv_A Twitching motility prot 97.0 0.00046 1.6E-08 51.5 3.1 23 10-32 137-159 (372)
360 2iyv_A Shikimate kinase, SK; t 97.0 0.0005 1.7E-08 45.8 3.0 21 11-31 4-24 (184)
361 3d3q_A TRNA delta(2)-isopenten 97.0 0.0006 2.1E-08 50.1 3.6 22 10-31 8-29 (340)
362 2pbr_A DTMP kinase, thymidylat 97.0 0.0005 1.7E-08 46.0 3.0 21 11-31 2-22 (195)
363 1sq5_A Pantothenate kinase; P- 96.9 0.00055 1.9E-08 49.7 3.4 25 7-31 78-102 (308)
364 1z47_A CYSA, putative ABC-tran 96.9 0.0005 1.7E-08 51.0 3.2 23 11-33 43-65 (355)
365 1vht_A Dephospho-COA kinase; s 96.9 0.00068 2.3E-08 46.5 3.7 23 9-31 4-26 (218)
366 1jbk_A CLPB protein; beta barr 96.9 0.00055 1.9E-08 45.4 3.2 24 9-32 43-66 (195)
367 2gza_A Type IV secretion syste 96.9 0.00041 1.4E-08 51.6 2.7 24 10-33 176-199 (361)
368 3be4_A Adenylate kinase; malar 96.9 0.00045 1.5E-08 47.5 2.8 23 9-31 5-27 (217)
369 1rj9_A FTSY, signal recognitio 96.9 0.00048 1.6E-08 50.0 3.0 84 59-152 186-281 (304)
370 3tui_C Methionine import ATP-b 96.9 0.00053 1.8E-08 51.0 3.2 23 11-33 56-78 (366)
371 2pt7_A CAG-ALFA; ATPase, prote 96.9 0.00043 1.5E-08 50.9 2.7 24 10-33 172-195 (330)
372 2yyz_A Sugar ABC transporter, 96.9 0.00052 1.8E-08 50.9 3.2 23 11-33 31-53 (359)
373 2bbs_A Cystic fibrosis transme 96.9 0.00048 1.6E-08 49.6 2.9 23 11-33 66-88 (290)
374 2it1_A 362AA long hypothetical 96.9 0.00055 1.9E-08 50.9 3.2 23 11-33 31-53 (362)
375 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.00054 1.8E-08 48.5 3.1 22 10-31 5-26 (260)
376 3rlf_A Maltose/maltodextrin im 96.9 0.00055 1.9E-08 51.2 3.2 23 11-33 31-53 (381)
377 1gtv_A TMK, thymidylate kinase 96.9 0.00017 5.9E-09 49.2 0.5 21 11-31 2-22 (214)
378 4e22_A Cytidylate kinase; P-lo 96.9 0.00062 2.1E-08 48.0 3.4 21 10-30 28-48 (252)
379 3r20_A Cytidylate kinase; stru 96.9 0.00064 2.2E-08 47.4 3.3 24 8-31 8-31 (233)
380 2f6r_A COA synthase, bifunctio 96.9 0.00075 2.6E-08 48.4 3.8 23 8-30 74-96 (281)
381 3crm_A TRNA delta(2)-isopenten 96.9 0.00073 2.5E-08 49.4 3.7 22 10-31 6-27 (323)
382 1ak2_A Adenylate kinase isoenz 96.9 0.00078 2.7E-08 46.8 3.7 23 9-31 16-38 (233)
383 1p9r_A General secretion pathw 96.9 0.00053 1.8E-08 52.0 3.0 22 11-32 169-190 (418)
384 3b9q_A Chloroplast SRP recepto 96.9 0.00057 1.9E-08 49.6 3.0 23 9-31 100-122 (302)
385 1v43_A Sugar-binding transport 96.9 0.00061 2.1E-08 50.8 3.2 23 11-33 39-61 (372)
386 1g29_1 MALK, maltose transport 96.9 0.0006 2E-08 50.9 3.2 23 11-33 31-53 (372)
387 2vli_A Antibiotic resistance p 96.9 0.00039 1.3E-08 46.2 2.0 23 9-31 5-27 (183)
388 3e70_C DPA, signal recognition 96.9 0.00086 3E-08 49.2 4.0 141 8-160 128-308 (328)
389 1zuh_A Shikimate kinase; alpha 96.9 0.00073 2.5E-08 44.3 3.3 21 11-31 9-29 (168)
390 2pez_A Bifunctional 3'-phospho 96.9 0.00082 2.8E-08 44.6 3.5 23 9-31 5-27 (179)
391 2oap_1 GSPE-2, type II secreti 96.9 0.00053 1.8E-08 53.3 2.9 24 10-33 261-284 (511)
392 1in4_A RUVB, holliday junction 96.8 0.00063 2.1E-08 50.0 3.0 23 10-32 52-74 (334)
393 1iy2_A ATP-dependent metallopr 96.8 0.00069 2.4E-08 48.3 3.1 22 11-32 75-96 (278)
394 4ido_A Atlastin-1; GTPase, GTP 96.8 0.0023 7.7E-08 48.9 5.9 23 8-30 66-88 (457)
395 2w0m_A SSO2452; RECA, SSPF, un 96.8 0.00072 2.5E-08 46.5 3.0 21 11-31 25-45 (235)
396 3d31_A Sulfate/molybdate ABC t 96.8 0.00049 1.7E-08 50.9 2.2 23 11-33 28-50 (348)
397 2grj_A Dephospho-COA kinase; T 96.8 0.00094 3.2E-08 45.1 3.4 25 8-32 11-35 (192)
398 2vp4_A Deoxynucleoside kinase; 96.8 0.00087 3E-08 46.5 3.3 25 8-32 19-43 (230)
399 3co5_A Putative two-component 96.8 0.0015 5.2E-08 41.7 4.2 24 9-32 27-50 (143)
400 3gd7_A Fusion complex of cysti 96.7 0.00076 2.6E-08 50.6 2.8 22 11-32 49-70 (390)
401 2p65_A Hypothetical protein PF 96.7 0.0007 2.4E-08 44.8 2.4 24 9-32 43-66 (187)
402 3nwj_A ATSK2; P loop, shikimat 96.7 0.00088 3E-08 47.2 3.0 22 10-31 49-70 (250)
403 3bos_A Putative DNA replicatio 96.7 0.00097 3.3E-08 46.0 3.2 23 9-31 52-74 (242)
404 1ltq_A Polynucleotide kinase; 96.7 0.0011 3.9E-08 47.7 3.6 22 10-31 3-24 (301)
405 4eaq_A DTMP kinase, thymidylat 96.7 0.0014 4.8E-08 45.5 3.9 25 8-32 25-49 (229)
406 2w58_A DNAI, primosome compone 96.7 0.0011 3.7E-08 44.9 3.2 23 10-32 55-77 (202)
407 3kta_A Chromosome segregation 96.7 0.00096 3.3E-08 44.3 2.8 21 11-31 28-48 (182)
408 3t15_A Ribulose bisphosphate c 96.7 0.0013 4.6E-08 47.3 3.8 25 8-32 35-59 (293)
409 2og2_A Putative signal recogni 96.7 0.00097 3.3E-08 49.5 3.0 23 9-31 157-179 (359)
410 1m7g_A Adenylylsulfate kinase; 96.7 0.0014 4.7E-08 44.8 3.6 23 9-31 25-47 (211)
411 1lv7_A FTSH; alpha/beta domain 96.7 0.0013 4.6E-08 46.2 3.6 23 9-31 45-67 (257)
412 1oxx_K GLCV, glucose, ABC tran 96.7 0.00049 1.7E-08 51.0 1.4 23 11-33 33-55 (353)
413 1f2t_A RAD50 ABC-ATPase; DNA d 96.7 0.0013 4.3E-08 42.6 3.2 19 12-30 26-44 (149)
414 3zvl_A Bifunctional polynucleo 96.7 0.0017 6E-08 49.1 4.4 25 8-32 257-281 (416)
415 2npi_A Protein CLP1; CLP1-PCF1 96.7 0.00087 3E-08 51.4 2.6 24 10-33 139-162 (460)
416 2cvh_A DNA repair and recombin 96.7 0.0011 3.9E-08 45.2 3.0 22 10-31 21-42 (220)
417 1n0w_A DNA repair protein RAD5 96.7 0.0011 3.9E-08 45.9 3.1 22 11-32 26-47 (243)
418 1cr0_A DNA primase/helicase; R 96.6 0.00093 3.2E-08 48.1 2.6 22 11-32 37-58 (296)
419 2yhs_A FTSY, cell division pro 96.6 0.0011 3.7E-08 51.2 3.1 91 58-160 376-478 (503)
420 1svm_A Large T antigen; AAA+ f 96.6 0.0012 4.3E-08 49.3 3.0 23 9-31 169-191 (377)
421 1tue_A Replication protein E1; 96.6 0.0011 3.6E-08 45.3 2.4 22 10-31 59-80 (212)
422 3ld9_A DTMP kinase, thymidylat 96.6 0.002 6.9E-08 44.6 3.8 29 3-31 15-43 (223)
423 3gmt_A Adenylate kinase; ssgci 96.6 0.0017 5.7E-08 45.2 3.3 24 8-31 7-30 (230)
424 2obl_A ESCN; ATPase, hydrolase 96.5 0.0013 4.4E-08 48.6 2.8 24 10-33 72-95 (347)
425 3n70_A Transport activator; si 96.5 0.002 6.9E-08 41.3 3.4 25 8-32 23-47 (145)
426 1nij_A Hypothetical protein YJ 96.5 0.00087 3E-08 48.9 1.8 23 11-33 6-28 (318)
427 3a8t_A Adenylate isopentenyltr 96.5 0.0022 7.7E-08 47.0 3.9 23 10-32 41-63 (339)
428 3foz_A TRNA delta(2)-isopenten 96.5 0.0022 7.5E-08 46.6 3.8 25 8-32 9-33 (316)
429 2qmh_A HPR kinase/phosphorylas 96.5 0.0016 5.5E-08 44.2 2.8 25 9-33 34-58 (205)
430 3v9p_A DTMP kinase, thymidylat 96.5 0.0013 4.6E-08 45.6 2.4 24 8-31 24-47 (227)
431 3h4m_A Proteasome-activating n 96.5 0.0018 6.2E-08 46.1 3.1 25 8-32 50-74 (285)
432 2chg_A Replication factor C sm 96.5 0.0018 6.1E-08 43.9 3.0 22 11-32 40-61 (226)
433 1q3t_A Cytidylate kinase; nucl 96.5 0.0022 7.5E-08 44.6 3.5 24 8-31 15-38 (236)
434 2qz4_A Paraplegin; AAA+, SPG7, 96.5 0.0022 7.7E-08 45.0 3.5 24 8-31 38-61 (262)
435 1njg_A DNA polymerase III subu 96.4 0.0018 6.1E-08 44.5 3.0 21 11-31 47-67 (250)
436 3b9p_A CG5977-PA, isoform A; A 96.4 0.0019 6.5E-08 46.4 3.1 24 9-32 54-77 (297)
437 3syl_A Protein CBBX; photosynt 96.4 0.0026 8.8E-08 45.9 3.8 24 8-31 66-89 (309)
438 3euj_A Chromosome partition pr 96.4 0.0018 6.1E-08 49.9 3.1 21 11-31 31-51 (483)
439 3b5x_A Lipid A export ATP-bind 96.4 0.0024 8.3E-08 50.4 3.9 23 11-33 371-393 (582)
440 3b60_A Lipid A export ATP-bind 96.4 0.0021 7.1E-08 50.8 3.5 24 10-33 370-393 (582)
441 3ake_A Cytidylate kinase; CMP 96.4 0.0022 7.6E-08 43.3 3.2 21 11-31 4-24 (208)
442 1yqt_A RNAse L inhibitor; ATP- 96.4 0.003 1E-07 49.5 4.1 24 10-33 48-71 (538)
443 1l8q_A Chromosomal replication 96.4 0.002 6.7E-08 47.0 2.9 22 10-31 38-59 (324)
444 3qf7_A RAD50; ABC-ATPase, ATPa 96.4 0.0022 7.5E-08 47.7 3.2 19 12-30 26-44 (365)
445 2dpy_A FLII, flagellum-specifi 96.4 0.0019 6.4E-08 49.3 2.8 24 10-33 158-181 (438)
446 1d2n_A N-ethylmaleimide-sensit 96.4 0.0033 1.1E-07 44.5 4.0 26 7-32 62-87 (272)
447 2h92_A Cytidylate kinase; ross 96.4 0.0024 8.2E-08 43.7 3.1 23 9-31 3-25 (219)
448 1nlf_A Regulatory protein REPA 96.3 0.0019 6.5E-08 46.1 2.6 21 11-31 32-52 (279)
449 3cf0_A Transitional endoplasmi 96.3 0.0023 8E-08 46.2 3.1 24 9-32 49-72 (301)
450 3ozx_A RNAse L inhibitor; ATP 96.3 0.0031 1E-07 49.4 3.9 23 11-33 27-49 (538)
451 3exa_A TRNA delta(2)-isopenten 96.3 0.0034 1.2E-07 45.6 3.6 23 10-32 4-26 (322)
452 3j16_B RLI1P; ribosome recycli 96.2 0.0036 1.2E-07 49.7 4.0 23 11-33 105-127 (608)
453 4a82_A Cystic fibrosis transme 96.2 0.002 6.9E-08 50.9 2.5 24 10-33 368-391 (578)
454 2yl4_A ATP-binding cassette SU 96.2 0.0022 7.6E-08 50.8 2.6 23 11-33 372-394 (595)
455 2dr3_A UPF0273 protein PH0284; 96.2 0.0027 9.4E-08 44.0 2.8 21 11-31 25-45 (247)
456 1ofh_A ATP-dependent HSL prote 96.2 0.0029 1E-07 45.4 3.1 23 9-31 50-72 (310)
457 3qf4_B Uncharacterized ABC tra 96.2 0.0025 8.5E-08 50.6 2.8 24 10-33 382-405 (598)
458 1vma_A Cell division protein F 96.2 0.003 1E-07 45.8 3.1 86 58-153 187-284 (306)
459 2px0_A Flagellar biosynthesis 96.2 0.0027 9.4E-08 45.8 2.8 85 58-152 183-273 (296)
460 1p5z_B DCK, deoxycytidine kina 96.2 0.0023 8E-08 45.2 2.4 25 8-32 23-47 (263)
461 3bk7_A ABC transporter ATP-bin 96.2 0.0043 1.5E-07 49.3 4.1 24 10-33 118-141 (607)
462 1fnn_A CDC6P, cell division co 96.2 0.0033 1.1E-07 46.6 3.2 22 11-32 46-67 (389)
463 1sxj_C Activator 1 40 kDa subu 96.2 0.003 1E-07 46.3 2.9 21 12-32 49-69 (340)
464 1sxj_E Activator 1 40 kDa subu 96.2 0.0024 8.4E-08 46.9 2.5 20 12-31 39-58 (354)
465 3ozx_A RNAse L inhibitor; ATP 96.2 0.0043 1.5E-07 48.6 3.9 23 11-33 296-318 (538)
466 1a7j_A Phosphoribulokinase; tr 96.1 0.0015 5.3E-08 47.0 1.3 24 8-31 4-27 (290)
467 4fcw_A Chaperone protein CLPB; 96.1 0.0051 1.7E-07 44.3 4.1 23 10-32 48-70 (311)
468 1c9k_A COBU, adenosylcobinamid 96.1 0.0036 1.2E-07 41.8 3.0 21 12-32 2-22 (180)
469 2qby_A CDC6 homolog 1, cell di 96.1 0.0027 9.3E-08 46.9 2.7 24 9-32 45-68 (386)
470 2qgz_A Helicase loader, putati 96.1 0.0035 1.2E-07 45.5 3.2 23 9-31 152-174 (308)
471 3qf4_A ABC transporter, ATP-bi 96.1 0.0029 9.8E-08 50.1 2.9 22 11-32 371-392 (587)
472 1pzn_A RAD51, DNA repair and r 96.1 0.0028 9.5E-08 46.9 2.6 23 10-32 132-154 (349)
473 4b4t_M 26S protease regulatory 96.1 0.0041 1.4E-07 47.3 3.5 24 8-31 214-237 (434)
474 2ocp_A DGK, deoxyguanosine kin 96.1 0.0041 1.4E-07 43.3 3.3 24 9-32 2-25 (241)
475 1yqt_A RNAse L inhibitor; ATP- 96.1 0.0051 1.8E-07 48.1 4.1 23 11-33 314-336 (538)
476 3qks_A DNA double-strand break 96.1 0.0041 1.4E-07 42.3 3.2 19 12-30 26-44 (203)
477 1xwi_A SKD1 protein; VPS4B, AA 96.1 0.0037 1.3E-07 45.6 3.1 24 9-32 45-68 (322)
478 3bk7_A ABC transporter ATP-bin 96.1 0.0054 1.8E-07 48.7 4.1 23 11-33 384-406 (607)
479 4b4t_K 26S protease regulatory 96.1 0.0044 1.5E-07 47.1 3.5 24 8-31 205-228 (428)
480 4edh_A DTMP kinase, thymidylat 96.0 0.0054 1.9E-07 42.1 3.6 24 8-31 5-28 (213)
481 3eie_A Vacuolar protein sortin 96.0 0.0039 1.3E-07 45.4 3.1 23 9-31 51-73 (322)
482 2ga8_A Hypothetical 39.9 kDa p 96.0 0.0066 2.3E-07 44.9 4.2 23 9-31 24-46 (359)
483 3lv8_A DTMP kinase, thymidylat 96.0 0.0045 1.5E-07 43.2 3.1 24 8-31 26-49 (236)
484 4b4t_L 26S protease subunit RP 96.0 0.0052 1.8E-07 46.8 3.5 24 8-31 214-237 (437)
485 2v1u_A Cell division control p 96.0 0.0044 1.5E-07 45.8 3.1 25 8-32 43-67 (387)
486 1sxj_D Activator 1 41 kDa subu 96.0 0.0043 1.5E-07 45.4 3.0 22 11-32 60-81 (353)
487 3tqf_A HPR(Ser) kinase; transf 95.9 0.0051 1.7E-07 40.8 2.9 25 9-33 16-40 (181)
488 3j16_B RLI1P; ribosome recycli 95.9 0.0065 2.2E-07 48.3 4.0 23 12-34 381-403 (608)
489 2r62_A Cell division protease 95.9 0.0019 6.6E-08 45.6 0.9 22 10-31 45-66 (268)
490 4dzz_A Plasmid partitioning pr 95.9 0.0093 3.2E-07 40.1 4.3 84 58-148 76-161 (206)
491 1um8_A ATP-dependent CLP prote 95.9 0.0058 2E-07 45.4 3.5 24 9-32 72-95 (376)
492 4b4t_J 26S protease regulatory 95.9 0.0058 2E-07 46.0 3.3 24 8-31 181-204 (405)
493 2z4s_A Chromosomal replication 95.9 0.0048 1.7E-07 47.0 2.9 22 10-31 131-152 (440)
494 3hws_A ATP-dependent CLP prote 95.8 0.0062 2.1E-07 45.1 3.5 25 8-32 50-74 (363)
495 3uk6_A RUVB-like 2; hexameric 95.8 0.0047 1.6E-07 45.6 2.8 22 10-31 71-92 (368)
496 3pfi_A Holliday junction ATP-d 95.8 0.0066 2.3E-07 44.3 3.5 23 10-32 56-78 (338)
497 3pxg_A Negative regulator of g 95.8 0.0046 1.6E-07 47.6 2.7 24 9-32 201-224 (468)
498 3cr8_A Sulfate adenylyltranfer 95.8 0.0031 1.1E-07 49.5 1.7 25 8-32 368-392 (552)
499 2qen_A Walker-type ATPase; unk 95.8 0.0057 1.9E-07 44.6 3.1 22 11-32 33-54 (350)
500 3m6a_A ATP-dependent protease 95.8 0.0052 1.8E-07 48.2 3.0 22 10-31 109-130 (543)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=9e-43 Score=243.12 Aligned_cols=166 Identities=77% Similarity=1.159 Sum_probs=147.4
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
.+.+||+|+|++|||||||+++|+.+.+...+.+|.+.++.......++..+.+.+|||+|+++|..++..|++++++++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i 90 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV 90 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l 166 (175)
+|||++++++|+.+..|+..+....++++|+++|+||+|+.+.+++..+++++++++++++|++|||++|.||+++|..|
T Consensus 91 lv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i 170 (216)
T 4dkx_A 91 VVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 170 (216)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHH
T ss_pred EEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHH
Confidence 99999999999999999999998888899999999999999889999999999999999999999999999999999999
Q ss_pred HHHHhh
Q 030524 167 NSLITV 172 (175)
Q Consensus 167 ~~~~~~ 172 (175)
++.+..
T Consensus 171 ~~~i~~ 176 (216)
T 4dkx_A 171 AAALPG 176 (216)
T ss_dssp HHHC--
T ss_pred HHHHHh
Confidence 887753
No 2
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=4.4e-37 Score=210.87 Aligned_cols=168 Identities=36% Similarity=0.664 Sum_probs=150.9
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (175)
....+||+++|++|+|||||+++|+++.+...+.++.+.++....+..++..+.+.+||+||++++...+..++.++|++
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 97 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 97 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEE
Confidence 34579999999999999999999999888777788888888888888899889999999999999999999999999999
Q ss_pred EEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHH
Q 030524 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHT 165 (175)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~ 165 (175)
|+|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+...+.+.++..++++++++||++|.|++++|.+
T Consensus 98 i~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 177 (191)
T 2a5j_A 98 LLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFIN 177 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999998877778999999999999877788888999999999999999999999999999999
Q ss_pred HHHHHhhh
Q 030524 166 LNSLITVC 173 (175)
Q Consensus 166 l~~~~~~~ 173 (175)
|.+.+..+
T Consensus 178 l~~~i~~~ 185 (191)
T 2a5j_A 178 TAKEIYRK 185 (191)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888754
No 3
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.1e-37 Score=213.39 Aligned_cols=167 Identities=38% Similarity=0.624 Sum_probs=154.9
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
...++|+++|++|+|||||+++|+++.+...+.++.+.++....+..++..+.+.+||+||++++...+..+++++|++|
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 35699999999999999999999999888888888888888888889998899999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l 166 (175)
+|||++++++++.+..|+..+......+.|+++|+||+|+.+.+++...+++.++...+++++++||++|.|++++|.++
T Consensus 104 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l 183 (201)
T 2ew1_A 104 LTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDL 183 (201)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988777789999999999998778888889999999999999999999999999999999
Q ss_pred HHHHhhh
Q 030524 167 NSLITVC 173 (175)
Q Consensus 167 ~~~~~~~ 173 (175)
.+.+..+
T Consensus 184 ~~~i~~~ 190 (201)
T 2ew1_A 184 ACRLISE 190 (201)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888654
No 4
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=3.4e-37 Score=208.81 Aligned_cols=168 Identities=33% Similarity=0.611 Sum_probs=154.3
Q ss_pred CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 030524 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (175)
Q Consensus 5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (175)
.....++|+++|++|+|||||+++++++.+...+.++.+.++.......++..+.+.+||+||++++...+..+++++|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence 34467999999999999999999999998887788888888888888889988999999999999999999999999999
Q ss_pred EEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHH
Q 030524 85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCH 164 (175)
Q Consensus 85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~ 164 (175)
+|+|||++++.+++.+..|+..+......+.|+++++||+|+.+++.....+.++++..++++++++||++|.|++++|+
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 170 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL 170 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999888777899999999999987788888899999999999999999999999999999
Q ss_pred HHHHHHhh
Q 030524 165 TLNSLITV 172 (175)
Q Consensus 165 ~l~~~~~~ 172 (175)
++.+.+..
T Consensus 171 ~l~~~i~~ 178 (179)
T 1z0f_A 171 EAAKKIYQ 178 (179)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHhh
Confidence 99988754
No 5
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=1.1e-36 Score=208.49 Aligned_cols=168 Identities=37% Similarity=0.665 Sum_probs=154.7
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
...++|+++|++|+|||||+++|+++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..++.++|++|
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 99 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL 99 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence 35699999999999999999999999888788888888888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l 166 (175)
+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.....+.++++..++++++++||++|.|++++|++|
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 179 (189)
T 2gf9_A 100 LMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERL 179 (189)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999988766789999999999998777888889999999999999999999999999999999
Q ss_pred HHHHhhhh
Q 030524 167 NSLITVCI 174 (175)
Q Consensus 167 ~~~~~~~~ 174 (175)
.+.+..+.
T Consensus 180 ~~~i~~~~ 187 (189)
T 2gf9_A 180 VDVICEKM 187 (189)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99887653
No 6
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=1.7e-37 Score=211.28 Aligned_cols=167 Identities=41% Similarity=0.686 Sum_probs=125.8
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
...++|+++|++|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+||+||++++...+..++.++|++|
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 45699999999999999999999988877788888888888888888998899999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l 166 (175)
+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+...+++.++..++++++++||++|.|++++|.+|
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 165 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTL 165 (183)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988766789999999999998777888899999999999999999999999999999999
Q ss_pred HHHHhhh
Q 030524 167 NSLITVC 173 (175)
Q Consensus 167 ~~~~~~~ 173 (175)
.+.+..+
T Consensus 166 ~~~i~~~ 172 (183)
T 2fu5_C 166 ARDIKAK 172 (183)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887654
No 7
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=2.6e-37 Score=213.74 Aligned_cols=167 Identities=40% Similarity=0.696 Sum_probs=146.3
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
...++|+++|++|+|||||+++|+++.+...+.++.+.++....+..++..+.+.+||+||++++...+..++.++|++|
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 45699999999999999999999998887778888888888888888988899999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC-eEEEeccCCCCCHHHHHHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKLCCHT 165 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~f~~ 165 (175)
+|||++++++++.+..|+..+......++|+++|+||+|+.+.+.+...++++++..+++ +++++||++|+|++++|.+
T Consensus 107 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 186 (201)
T 2hup_A 107 LAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLR 186 (201)
T ss_dssp EEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHH
Confidence 999999999999999999999888777899999999999987778888999999999999 9999999999999999999
Q ss_pred HHHHHhhh
Q 030524 166 LNSLITVC 173 (175)
Q Consensus 166 l~~~~~~~ 173 (175)
|.+.+..+
T Consensus 187 l~~~i~~~ 194 (201)
T 2hup_A 187 VATELIMR 194 (201)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99988764
No 8
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=1.3e-36 Score=208.98 Aligned_cols=166 Identities=39% Similarity=0.671 Sum_probs=156.4
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (175)
..++|+++|++|+|||||+++|+++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..++.++|++|+
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 94 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 94 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEE
Confidence 46999999999999999999999998888888999889998999999999999999999999999999999999999999
Q ss_pred EEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLN 167 (175)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~ 167 (175)
|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.....+.+.++..++++++++||++|.|++++|.+|.
T Consensus 95 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 174 (196)
T 3tkl_A 95 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA 174 (196)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999999999888778899999999999988888899999999999999999999999999999999999
Q ss_pred HHHhhh
Q 030524 168 SLITVC 173 (175)
Q Consensus 168 ~~~~~~ 173 (175)
+.+...
T Consensus 175 ~~i~~~ 180 (196)
T 3tkl_A 175 AEIKKR 180 (196)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988754
No 9
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=1.1e-36 Score=211.05 Aligned_cols=167 Identities=39% Similarity=0.631 Sum_probs=155.3
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
...++|+++|++|+|||||+++|++..+...+.++.+.++....+..++..+.+.+||+||++++...+..++.++|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 45799999999999999999999999888888888888888888888998899999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l 166 (175)
+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+....+++..++..++++++++||++|.|++++|.+|
T Consensus 86 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 165 (206)
T 2bcg_Y 86 IVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTM 165 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988777789999999999998877888889999999999999999999999999999999
Q ss_pred HHHHhhh
Q 030524 167 NSLITVC 173 (175)
Q Consensus 167 ~~~~~~~ 173 (175)
.+.+...
T Consensus 166 ~~~i~~~ 172 (206)
T 2bcg_Y 166 ARQIKES 172 (206)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888654
No 10
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=8.3e-37 Score=208.34 Aligned_cols=167 Identities=35% Similarity=0.605 Sum_probs=154.7
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
...++|+++|++|+|||||+++++++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..++.++|++|
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 45699999999999999999999999888888888888888888888998899999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l 166 (175)
+|||++++++++.+..|+..+......+.|+++++||+|+.+++.....+...++...+++++++||++|.|++++|+++
T Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 167 (186)
T 2bme_A 88 LVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQC 167 (186)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence 99999999999999999999888777789999999999998777888889999999999999999999999999999999
Q ss_pred HHHHhhh
Q 030524 167 NSLITVC 173 (175)
Q Consensus 167 ~~~~~~~ 173 (175)
.+.+..+
T Consensus 168 ~~~~~~~ 174 (186)
T 2bme_A 168 ARKILNK 174 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888754
No 11
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=5.2e-37 Score=206.37 Aligned_cols=166 Identities=37% Similarity=0.642 Sum_probs=146.5
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
...++|+++|++|+|||||+++++++.+...+.++.+.++....+..++..+.+.+||+||++++...+..+++++|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 45799999999999999999999999888888888888888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l 166 (175)
+|||++++.+++.+..|+..+......+.|+++++||+|+.+++.+...+.+.++...+++++++||++|.|++++|++|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 163 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 99999999999999999999887766789999999999998878888889999999999999999999999999999999
Q ss_pred HHHHhh
Q 030524 167 NSLITV 172 (175)
Q Consensus 167 ~~~~~~ 172 (175)
.+.+..
T Consensus 164 ~~~~~~ 169 (170)
T 1z08_A 164 CKRMIE 169 (170)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 988753
No 12
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=5.3e-37 Score=206.10 Aligned_cols=165 Identities=38% Similarity=0.748 Sum_probs=152.6
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
...++|+++|++|+|||||+++++++.+...+.++.+.++.......++..+.+.+||+||++++...+..++.++|++|
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 35799999999999999999999998888778888888888888888988999999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l 166 (175)
+|||++++.+++.+..|+..+.....+++|+++++||+|+.+++.....+...++...+++++++||++|.|++++|++|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i 163 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988877889999999999998777888889999999999999999999999999999999
Q ss_pred HHHHh
Q 030524 167 NSLIT 171 (175)
Q Consensus 167 ~~~~~ 171 (175)
.+.+.
T Consensus 164 ~~~~~ 168 (170)
T 1r2q_A 164 AKKLP 168 (170)
T ss_dssp HHTSC
T ss_pred HHHHh
Confidence 88764
No 13
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=1.4e-36 Score=206.33 Aligned_cols=167 Identities=37% Similarity=0.683 Sum_probs=153.2
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (175)
....++|+++|++|+|||||+++++++.+...+.++.+.++....+..++..+.+.+||+||++++...+..+++++|++
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 88 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 88 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence 34679999999999999999999999988877788888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHH
Q 030524 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHT 165 (175)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~ 165 (175)
|+|||++++.+++.+..|+..+.....++.|+++++||+|+.+.++....+.+.++..++++++++||++|.|++++|.+
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 168 (181)
T 2efe_B 89 IIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYE 168 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999998887678999999999999877888889999999999999999999999999999999
Q ss_pred HHHHHhh
Q 030524 166 LNSLITV 172 (175)
Q Consensus 166 l~~~~~~ 172 (175)
|.+.+..
T Consensus 169 l~~~~~~ 175 (181)
T 2efe_B 169 IARRLPR 175 (181)
T ss_dssp HHHTCC-
T ss_pred HHHHHHh
Confidence 9987654
No 14
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=6.9e-37 Score=207.97 Aligned_cols=168 Identities=31% Similarity=0.406 Sum_probs=151.1
Q ss_pred CCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCc
Q 030524 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (175)
Q Consensus 4 ~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 83 (175)
|+..+.++|+++|++|+|||||+++|+.+.+...+.++.+.++ ......++..+.+.+||+||++++...+..++.++|
T Consensus 1 m~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 79 (181)
T 3t5g_A 1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDIN 79 (181)
T ss_dssp -CCEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCS
T ss_pred CCCCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCC
Confidence 3455689999999999999999999998888888888887666 677778898999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHH
Q 030524 84 VAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLC 162 (175)
Q Consensus 84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~ 162 (175)
++++|||++++++++.+..|+..+..... .++|+++|+||+|+.+++.+...+++.++..++++++++||++|.|++++
T Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 159 (181)
T 3t5g_A 80 GYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDV 159 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHH
Confidence 99999999999999999999999877654 58999999999999888899999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 030524 163 CHTLNSLITV 172 (175)
Q Consensus 163 f~~l~~~~~~ 172 (175)
|.++.+.+..
T Consensus 160 ~~~l~~~~~~ 169 (181)
T 3t5g_A 160 FRRIILEAEK 169 (181)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999998765
No 15
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=7.7e-37 Score=205.33 Aligned_cols=164 Identities=43% Similarity=0.755 Sum_probs=151.2
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (175)
.+++|+++|++|+|||||+++++++.+...+.++.+.++.......++..+.+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 46899999999999999999999998888888888888888888889989999999999999999999999999999999
Q ss_pred EEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC---CCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHH
Q 030524 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK---RQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCH 164 (175)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~ 164 (175)
|||++++.+++.+..|+..+......+.|+++++||+|+.+. +++...+.+.++..++++++++||++|.|++++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999998887778999999999998765 67788888999999999999999999999999999
Q ss_pred HHHHHHh
Q 030524 165 TLNSLIT 171 (175)
Q Consensus 165 ~l~~~~~ 171 (175)
+|.+.+.
T Consensus 162 ~l~~~i~ 168 (170)
T 1ek0_A 162 GIGEKIP 168 (170)
T ss_dssp HHHTTSC
T ss_pred HHHHHHh
Confidence 9988764
No 16
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=2.2e-36 Score=205.85 Aligned_cols=167 Identities=31% Similarity=0.517 Sum_probs=151.9
Q ss_pred CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 030524 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (175)
Q Consensus 5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (175)
.....+||+++|++|+|||||+++++++.+...+.++.+..+ ......++..+.+.+||+||++.+...+..++.++|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 92 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG 92 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 345679999999999999999999999888888888877555 6777788988999999999999999999999999999
Q ss_pred EEEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccC-CCCCHHHH
Q 030524 85 AVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK-AGFNIKLC 162 (175)
Q Consensus 85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~v~~~ 162 (175)
+++|||++++++++.+..|+..+..... .++|+++|+||+|+.+.+.+...+++.++..++++++++||+ +|.|++++
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l 172 (183)
T 3kkq_A 93 FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKT 172 (183)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHH
Confidence 9999999999999999999999877543 789999999999998888999999999999999999999999 99999999
Q ss_pred HHHHHHHHhh
Q 030524 163 CHTLNSLITV 172 (175)
Q Consensus 163 f~~l~~~~~~ 172 (175)
|++|.+.+..
T Consensus 173 ~~~l~~~i~~ 182 (183)
T 3kkq_A 173 FHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999988764
No 17
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.2e-37 Score=210.36 Aligned_cols=170 Identities=35% Similarity=0.602 Sum_probs=147.7
Q ss_pred CCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCc
Q 030524 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (175)
Q Consensus 4 ~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 83 (175)
.+....++|+++|++|+|||||+++|+++.+...+.++.+.++....+..++..+.+.+||+||++++...+..++.++|
T Consensus 21 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (192)
T 2il1_A 21 RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAK 100 (192)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCS
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCC
Confidence 34456799999999999999999999998887778888888888888888998899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhc-CCeEEEeccCCCCCHHHH
Q 030524 84 VAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKLC 162 (175)
Q Consensus 84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~v~~~ 162 (175)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+++...+.+.++... +++++++||++|+|++++
T Consensus 101 ~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 180 (192)
T 2il1_A 101 GIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEI 180 (192)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHH
Confidence 9999999999999999999999888877678999999999999877888888888999885 789999999999999999
Q ss_pred HHHHHHHHhhh
Q 030524 163 CHTLNSLITVC 173 (175)
Q Consensus 163 f~~l~~~~~~~ 173 (175)
|++|.+.+..+
T Consensus 181 ~~~l~~~i~~~ 191 (192)
T 2il1_A 181 FLKLVDDILKK 191 (192)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 18
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=3e-36 Score=208.44 Aligned_cols=167 Identities=35% Similarity=0.632 Sum_probs=154.2
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
...++|+++|++|+|||||+++|++..+...+.++.+.++....+..++..+.+.+||+||++++...+..++.++|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 45699999999999999999999999888888888888888888888988999999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l 166 (175)
+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.....+.+.++..++++++++||++|.|++++|++|
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 165 (203)
T 1zbd_A 86 LMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERL 165 (203)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999988766789999999999998878888899999999999999999999999999999999
Q ss_pred HHHHhhh
Q 030524 167 NSLITVC 173 (175)
Q Consensus 167 ~~~~~~~ 173 (175)
.+.+..+
T Consensus 166 ~~~i~~~ 172 (203)
T 1zbd_A 166 VDVICEK 172 (203)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887654
No 19
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=2.4e-36 Score=202.99 Aligned_cols=165 Identities=36% Similarity=0.668 Sum_probs=153.0
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
.+.++|+++|++|+|||||+++++++.+...+.++.+.++.......++....+.+||+||++++...+..++.++|++|
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 45699999999999999999999999888888888888888888888998899999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l 166 (175)
+|||++++.+++.+..|+..+.....+..|+++++||+|+.+.++....+.+.++..++++++++||++|.|++++|.+|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 163 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence 99999999999999999999988767889999999999998878888889999999999999999999999999999999
Q ss_pred HHHHh
Q 030524 167 NSLIT 171 (175)
Q Consensus 167 ~~~~~ 171 (175)
.+.+.
T Consensus 164 ~~~i~ 168 (170)
T 1z0j_A 164 SRRIP 168 (170)
T ss_dssp HHHCC
T ss_pred HHHHh
Confidence 88764
No 20
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.3e-36 Score=203.72 Aligned_cols=168 Identities=38% Similarity=0.669 Sum_probs=145.3
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (175)
....++|+++|++|+|||||+++|++..+. ..+.++.+.++.......++..+.+.+||+||++++...+..++.++|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 346799999999999999999999998875 4677888888888888889988999999999999999999999999999
Q ss_pred EEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHH
Q 030524 85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCH 164 (175)
Q Consensus 85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~ 164 (175)
+|+|||++++.+++.+..|+..+......+.|+++++||+|+.+++.....+.+.++..++++++++||++|.|++++|+
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 166 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFT 166 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999887767899999999999988788888899999999999999999999999999999
Q ss_pred HHHHHHhhh
Q 030524 165 TLNSLITVC 173 (175)
Q Consensus 165 ~l~~~~~~~ 173 (175)
++.+.+...
T Consensus 167 ~l~~~~~~~ 175 (180)
T 2g6b_A 167 AIAKELKRR 175 (180)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 999887643
No 21
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.8e-36 Score=207.02 Aligned_cols=167 Identities=32% Similarity=0.622 Sum_probs=154.0
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
...++|+++|++|+|||||+++|++..+...+.++.+.++.......++..+.+.+||+||++++...+..++.++|++|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 34699999999999999999999999888788888888888888888888999999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l 166 (175)
+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.....+++.++...+++++++||++|.|++++|.+|
T Consensus 103 ~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 182 (193)
T 2oil_A 103 LVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETV 182 (193)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999987766789999999999998777888889999999999999999999999999999999
Q ss_pred HHHHhhh
Q 030524 167 NSLITVC 173 (175)
Q Consensus 167 ~~~~~~~ 173 (175)
.+.+..+
T Consensus 183 ~~~i~~~ 189 (193)
T 2oil_A 183 LKEIFAK 189 (193)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988764
No 22
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.2e-36 Score=203.28 Aligned_cols=166 Identities=37% Similarity=0.670 Sum_probs=151.6
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
...++|+++|++|+|||||+++|+++.....+.++.+.++....+..++..+.+.+||+||++.+...+..++.++|++|
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 86 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI 86 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence 45699999999999999999999999888888888888888888889999899999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l 166 (175)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+.+.....+...++...+++++++||++|.|++++|+++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 165 (181)
T 3tw8_B 87 VVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCI 165 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 9999999999999999999988765 589999999999998888888899999999999999999999999999999999
Q ss_pred HHHHhhh
Q 030524 167 NSLITVC 173 (175)
Q Consensus 167 ~~~~~~~ 173 (175)
.+.+...
T Consensus 166 ~~~~~~~ 172 (181)
T 3tw8_B 166 TELVLRA 172 (181)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887653
No 23
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.3e-36 Score=209.98 Aligned_cols=167 Identities=35% Similarity=0.616 Sum_probs=144.3
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
...++|+++|++|+|||||+++|+++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++++|++|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 45799999999999999999999998887778888888888888888998899999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l 166 (175)
+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+...++..++...+++++++||++|.|++++|.+|
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l 182 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKC 182 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988776789999999999998777888889999999999999999999999999999999
Q ss_pred HHHHhhh
Q 030524 167 NSLITVC 173 (175)
Q Consensus 167 ~~~~~~~ 173 (175)
.+.+..+
T Consensus 183 ~~~i~~~ 189 (200)
T 2o52_A 183 ARTILNK 189 (200)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888654
No 24
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=3.2e-36 Score=206.48 Aligned_cols=173 Identities=37% Similarity=0.594 Sum_probs=152.4
Q ss_pred CCCCCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEE-EEEEEECCe---------EEEEEEEeCCCccc
Q 030524 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFL-SKTMYLEDR---------TVRLQLWDTAGQER 70 (175)
Q Consensus 1 ~~~~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~D~~G~~~ 70 (175)
|++......++|+++|++|+|||||+++|+++.+...+.++.+.++. ......++. .+.+.+||+||++.
T Consensus 3 m~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 82 (195)
T 3bc1_A 3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER 82 (195)
T ss_dssp ---CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG
T ss_pred CcccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH
Confidence 34334456799999999999999999999998888788888887777 556666655 78999999999999
Q ss_pred ccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEE
Q 030524 71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFI 149 (175)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~ 149 (175)
+...+..++.++|++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+.....+++.++..++++++
T Consensus 83 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 162 (195)
T 3bc1_A 83 FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYF 162 (195)
T ss_dssp GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEE
Confidence 999999999999999999999999999999999999988765 6899999999999987778888899999999999999
Q ss_pred EeccCCCCCHHHHHHHHHHHHhhh
Q 030524 150 ETSAKAGFNIKLCCHTLNSLITVC 173 (175)
Q Consensus 150 ~~s~~~~~~v~~~f~~l~~~~~~~ 173 (175)
++||++|.|++++|.+|.+.+...
T Consensus 163 ~~Sa~~~~~v~~l~~~l~~~~~~~ 186 (195)
T 3bc1_A 163 ETSAANGTNISHAIEMLLDLIMKR 186 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999887654
No 25
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=1.8e-36 Score=205.19 Aligned_cols=166 Identities=79% Similarity=1.169 Sum_probs=153.5
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
..+++|+++|++|+|||||+++++++.+...+.++.+.++....+..++..+.+.+||+||++++...+..++.++|++|
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 45699999999999999999999998888888888888888888889998899999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l 166 (175)
+|||++++.+++.+..|+..+......++|+++|+||+|+.++++....+.+.++...+++++++||++|.|++++|++|
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 171 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 171 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988777789999999999998878888889999999999999999999999999999999
Q ss_pred HHHHhh
Q 030524 167 NSLITV 172 (175)
Q Consensus 167 ~~~~~~ 172 (175)
.+.+..
T Consensus 172 ~~~~~~ 177 (179)
T 2y8e_A 172 AAALPG 177 (179)
T ss_dssp HHTCC-
T ss_pred HHHHhh
Confidence 887653
No 26
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=2.2e-36 Score=203.23 Aligned_cols=165 Identities=40% Similarity=0.722 Sum_probs=145.5
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (175)
..++|+++|++|+|||||+++++++.+...+.++.+.++....+..++..+.+.+||+||++++...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 45899999999999999999999998888888888888888888888888899999999999999999999999999999
Q ss_pred EEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLN 167 (175)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~ 167 (175)
|||++++.+++.+..|+..+......+.|+++++||+|+ ..+.....+.+.++..++++++++||++|.|++++|.+|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 160 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999999998887778999999999998 4566778888999999999999999999999999999999
Q ss_pred HHHhhh
Q 030524 168 SLITVC 173 (175)
Q Consensus 168 ~~~~~~ 173 (175)
+.+..+
T Consensus 161 ~~~~~~ 166 (170)
T 1g16_A 161 KLIQEK 166 (170)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 988765
No 27
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=2.9e-36 Score=202.23 Aligned_cols=165 Identities=35% Similarity=0.594 Sum_probs=152.0
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
...++|+++|++|+|||||+++++++.+...+.++.+.++....+..++..+.+.+||+||++++...+..++.++|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 35799999999999999999999999888888888888888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l 166 (175)
+|||++++++++.+..|+..+.... .+.|+++++||+|+.+.++....+.+.++..++++++++||++|.|++++|++|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 161 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL 161 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence 9999999999999999999988776 689999999999998777888889999999999999999999999999999999
Q ss_pred HHHHhh
Q 030524 167 NSLITV 172 (175)
Q Consensus 167 ~~~~~~ 172 (175)
.+.+..
T Consensus 162 ~~~~~~ 167 (168)
T 1z2a_A 162 AEKHLQ 167 (168)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 988764
No 28
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.1e-36 Score=207.70 Aligned_cols=166 Identities=36% Similarity=0.681 Sum_probs=152.9
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
...+||+++|++|+|||||+++|+++.+...+.++.+.++.......++....+.+||+||++++...+..++.++|++|
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV 100 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence 45799999999999999999999999887788888888888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l 166 (175)
+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.....+.++++..++++++++||++|.|++++|++|
T Consensus 101 lV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 180 (192)
T 2fg5_A 101 IVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGI 180 (192)
T ss_dssp EEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence 99999999999999999999988776789999999999998777888899999999999999999999999999999999
Q ss_pred HHHHhh
Q 030524 167 NSLITV 172 (175)
Q Consensus 167 ~~~~~~ 172 (175)
.+.+..
T Consensus 181 ~~~i~~ 186 (192)
T 2fg5_A 181 SRQIPP 186 (192)
T ss_dssp HHTCC-
T ss_pred HHHHHh
Confidence 987754
No 29
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=2.1e-36 Score=208.26 Aligned_cols=169 Identities=25% Similarity=0.341 Sum_probs=144.9
Q ss_pred CCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc-cccccccCC
Q 030524 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-LIPSYIRDS 82 (175)
Q Consensus 4 ~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~ 82 (175)
.+....++|+++|++|||||||+++|++........++.+.+.....+.+++..+.+.+||++|++.+.. ++..++.++
T Consensus 18 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~ 97 (195)
T 3cbq_A 18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTG 97 (195)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHC
T ss_pred CCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccC
Confidence 3445679999999999999999999986544434455566677777778899999999999999988765 777888999
Q ss_pred cEEEEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHH
Q 030524 83 SVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKL 161 (175)
Q Consensus 83 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~ 161 (175)
|++|+|||++++++|+.+..|+..+..... .++|+++|+||+|+.+.+.+...+++.++..++++++++||++|.|+++
T Consensus 98 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~ 177 (195)
T 3cbq_A 98 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRE 177 (195)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHH
Confidence 999999999999999999999999887654 5899999999999987788888899999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 030524 162 CCHTLNSLITV 172 (175)
Q Consensus 162 ~f~~l~~~~~~ 172 (175)
+|.++.+.+..
T Consensus 178 lf~~l~~~i~~ 188 (195)
T 3cbq_A 178 LFEGAVRQIRL 188 (195)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 30
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.2e-37 Score=212.35 Aligned_cols=167 Identities=35% Similarity=0.647 Sum_probs=155.4
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (175)
..+||+++|++|+|||||+++|+++.+...+.++.+.++.......++..+.+.+||+||++.+...+..++.++|++|+
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 101 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL 101 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEE
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEE
Confidence 56999999999999999999999988888888888888888888888888899999999999999999999999999999
Q ss_pred EEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLN 167 (175)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~ 167 (175)
|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.....+.+.++..++++++++||++|.|++++|++|.
T Consensus 102 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 181 (191)
T 3dz8_A 102 MYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLV 181 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999999887777899999999999988888899999999999999999999999999999999999
Q ss_pred HHHhhhh
Q 030524 168 SLITVCI 174 (175)
Q Consensus 168 ~~~~~~~ 174 (175)
+.+..+.
T Consensus 182 ~~i~~~~ 188 (191)
T 3dz8_A 182 DAICDKM 188 (191)
T ss_dssp HHHHHHC
T ss_pred HHHHHhc
Confidence 9887653
No 31
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-36 Score=211.35 Aligned_cols=167 Identities=34% Similarity=0.636 Sum_probs=145.8
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
...++|+++|++|+|||||+++|++..+...+.++.+.++....+..++..+.+.+||+||++++...+..++.++|++|
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 45699999999999999999999999888788888888888888888998899999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l 166 (175)
+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+++...++..++..++++++++||++|.|++++|++|
T Consensus 91 lV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 170 (223)
T 3cpj_B 91 IVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEEL 170 (223)
T ss_dssp EEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988776789999999999998777888889999999999999999999999999999999
Q ss_pred HHHHhhh
Q 030524 167 NSLITVC 173 (175)
Q Consensus 167 ~~~~~~~ 173 (175)
.+.+...
T Consensus 171 ~~~i~~~ 177 (223)
T 3cpj_B 171 INTIYQK 177 (223)
T ss_dssp HHHHTTC
T ss_pred HHHHHHH
Confidence 9888654
No 32
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.3e-36 Score=209.84 Aligned_cols=169 Identities=39% Similarity=0.618 Sum_probs=140.4
Q ss_pred CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 030524 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (175)
Q Consensus 5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (175)
.....++|+++|++|+|||||+++++++.+...+.++.+.++....+.+++..+.+.+||+||++++...+..++.++|+
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 103 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG 103 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence 34467999999999999999999999998877778888888888888889999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC------CCCCCCHHHHHHHHHhcCCeEEEeccCCCCC
Q 030524 85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV------EKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158 (175)
Q Consensus 85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~------~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 158 (175)
+|+|||++++.+++.+..|+..+......++|+++|+||+|+. ..+.+...+++.++...+++++++||++|.|
T Consensus 104 iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~g 183 (199)
T 2p5s_A 104 VLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSN 183 (199)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCC
Confidence 9999999999999999999998887766789999999999986 3567778889999999999999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 030524 159 IKLCCHTLNSLITVC 173 (175)
Q Consensus 159 v~~~f~~l~~~~~~~ 173 (175)
++++|.+|.+.+..+
T Consensus 184 v~el~~~l~~~i~~~ 198 (199)
T 2p5s_A 184 IVEAVLHLAREVKKR 198 (199)
T ss_dssp HHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999987653
No 33
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=4e-36 Score=205.70 Aligned_cols=167 Identities=34% Similarity=0.580 Sum_probs=148.9
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccccc-ccccccccCCcE
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-SLIPSYIRDSSV 84 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~ 84 (175)
..+.+||+++|++|+|||||+++|+++.+...+.++.+.++....+..++..+.+.+||+||++++. ..+..+++++|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 3467999999999999999999999998888888888888888888889988999999999999998 888999999999
Q ss_pred EEEEEECCChhhHHhHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCC---CCHH
Q 030524 85 AVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG---FNIK 160 (175)
Q Consensus 85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~~v~ 160 (175)
+|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+++...+.+.++..++++++++||++| +|+.
T Consensus 97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~ 176 (189)
T 1z06_A 97 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVE 176 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHH
Confidence 999999999999999999999998876 468999999999999877788889999999999999999999999 9999
Q ss_pred HHHHHHHHHHhh
Q 030524 161 LCCHTLNSLITV 172 (175)
Q Consensus 161 ~~f~~l~~~~~~ 172 (175)
++|.+|.+.+..
T Consensus 177 ~l~~~l~~~i~~ 188 (189)
T 1z06_A 177 AIFMTLAHKLKS 188 (189)
T ss_dssp HHHHHHC-----
T ss_pred HHHHHHHHHHhh
Confidence 999999887643
No 34
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=2.1e-36 Score=204.87 Aligned_cols=168 Identities=32% Similarity=0.479 Sum_probs=149.5
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECC-eEEEEEEEeCCCcccccccccccccCCcE
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (175)
....++|+++|++|+|||||+++|+++.+...+.++.+.++....+..++ ..+.+.+||+||++.+...+..++.++|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 45679999999999999999999999887777778888788888888876 67899999999999999999999999999
Q ss_pred EEEEEECCChhhHHhHHHHHHHHHHhcC--CCCc-EEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHH
Q 030524 85 AVVVYDVASRQSFLNTSKWIDEVRTERG--SDVI-IVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKL 161 (175)
Q Consensus 85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~-~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~ 161 (175)
+|+|||++++++++.+..|+..+..... .+.| +++|+||+|+.+.+.....+.+.++..++++++++||++|.|+++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 162 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL 162 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 9999999999999999999988877532 2455 889999999987778888899999999999999999999999999
Q ss_pred HHHHHHHHHhhh
Q 030524 162 CCHTLNSLITVC 173 (175)
Q Consensus 162 ~f~~l~~~~~~~ 173 (175)
+|++|.+.+...
T Consensus 163 l~~~l~~~~~~~ 174 (178)
T 2hxs_A 163 CFQKVAAEILGI 174 (178)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHhh
Confidence 999999887653
No 35
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=3.2e-36 Score=206.01 Aligned_cols=167 Identities=25% Similarity=0.383 Sum_probs=143.6
Q ss_pred CCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCc
Q 030524 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (175)
Q Consensus 4 ~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 83 (175)
+.....+||+++|++|+|||||+++++++.+...+.++.+..+ .....+++..+.+.+||++|++++... ..++.++|
T Consensus 16 ~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~ 93 (187)
T 3c5c_A 16 FQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAH 93 (187)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCS
T ss_pred hCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCC
Confidence 3445679999999999999999999999988888888877554 456678888899999999999988875 67899999
Q ss_pred EEEEEEECCChhhHHhHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEecc-CCCCCH
Q 030524 84 VAVVVYDVASRQSFLNTSKWIDEVRTERG---SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSA-KAGFNI 159 (175)
Q Consensus 84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~v 159 (175)
++|+|||++++++++.+..|+..+..... .++|+++|+||+|+.+.+.+...++.+++..++++++++|| ++|.|+
T Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv 173 (187)
T 3c5c_A 94 AFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHV 173 (187)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccH
Confidence 99999999999999999999999887642 58999999999999877888899999999999999999999 899999
Q ss_pred HHHHHHHHHHHhh
Q 030524 160 KLCCHTLNSLITV 172 (175)
Q Consensus 160 ~~~f~~l~~~~~~ 172 (175)
+++|+++.+.+..
T Consensus 174 ~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 174 QHVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988753
No 36
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=5.6e-36 Score=201.21 Aligned_cols=164 Identities=26% Similarity=0.369 Sum_probs=135.2
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc-cccccccCCcEEEE
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-LIPSYIRDSSVAVV 87 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~i~ 87 (175)
.+||+++|++|+|||||++++++........++.+.+.....+..++..+.+.+||++|++++.. .+..++.++|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 48999999999999999999998776666666666778888888999999999999999998876 77778899999999
Q ss_pred EEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524 88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166 (175)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l 166 (175)
|||++++++++.+..|+..+..... .++|+++++||+|+.+.+.+...+.+.++..++++++++||++|.|++++|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 9999999999999999999988765 589999999999998888899999999999999999999999999999999999
Q ss_pred HHHHhh
Q 030524 167 NSLITV 172 (175)
Q Consensus 167 ~~~~~~ 172 (175)
.+.+..
T Consensus 162 ~~~i~~ 167 (169)
T 3q85_A 162 VRQIRL 167 (169)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998764
No 37
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=7.4e-36 Score=202.51 Aligned_cols=167 Identities=31% Similarity=0.453 Sum_probs=149.9
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (175)
....++|+++|++|+|||||+++|+++.+...+.++.+..+. .....++..+.+.+||+||++++...+..++.++|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence 456799999999999999999999999887787888776554 6677888888999999999999999999999999999
Q ss_pred EEEEECCChhhHHhHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHH
Q 030524 86 VVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCH 164 (175)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~ 164 (175)
++|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+.+++...+.+.++...+++++++||++|.|++++|+
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 164 (181)
T 2fn4_A 85 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFE 164 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Confidence 99999999999999999999986554 46899999999999988788888899999999999999999999999999999
Q ss_pred HHHHHHhhh
Q 030524 165 TLNSLITVC 173 (175)
Q Consensus 165 ~l~~~~~~~ 173 (175)
+|.+.+...
T Consensus 165 ~l~~~~~~~ 173 (181)
T 2fn4_A 165 QLVRAVRKY 173 (181)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999887653
No 38
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2e-36 Score=209.20 Aligned_cols=169 Identities=31% Similarity=0.419 Sum_probs=145.1
Q ss_pred CCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCc
Q 030524 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (175)
Q Consensus 4 ~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 83 (175)
|+..+.+||+++|++|+|||||+++|+++.+...+.++.+..+ ......++..+.+.+||+||++++...+..++.++|
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 97 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVH 97 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCC
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCC
Confidence 5556789999999999999999999999988888888877555 556666777788999999999999999999999999
Q ss_pred EEEEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHH
Q 030524 84 VAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLC 162 (175)
Q Consensus 84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~ 162 (175)
++|+|||++++++++.+..|+..+..... .++|+++|+||+|+.+.+.+...+.+.++..++++++++||++|.|++++
T Consensus 98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 177 (201)
T 3oes_A 98 GYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGI 177 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Confidence 99999999999999999999999887644 57999999999999888889999999999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 030524 163 CHTLNSLITVC 173 (175)
Q Consensus 163 f~~l~~~~~~~ 173 (175)
|.+|.+.+...
T Consensus 178 ~~~l~~~i~~~ 188 (201)
T 3oes_A 178 FTKVIQEIARV 188 (201)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhh
Confidence 99999987653
No 39
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=1.9e-35 Score=200.02 Aligned_cols=167 Identities=37% Similarity=0.591 Sum_probs=147.5
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (175)
....++|+++|++|+|||||+++++++.+...+.++.+.++....+..++..+.+.+||+||++++...+..++.++|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 34579999999999999999999999988888888888888888888999889999999999999999999999999999
Q ss_pred EEEEECCChhhHHhHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-hcCCeEEEeccCCCCCHH
Q 030524 86 VVVYDVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-ELNVMFIETSAKAGFNIK 160 (175)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~v~ 160 (175)
++|||++++.+++.+..|+..+..... .+.|+++++||+|+. .++....+...++. ..+++++++||++|.|++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 162 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVA 162 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence 999999999999999999999887654 678999999999986 56677888888888 567899999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030524 161 LCCHTLNSLITVC 173 (175)
Q Consensus 161 ~~f~~l~~~~~~~ 173 (175)
++|+++.+.+...
T Consensus 163 ~l~~~l~~~~~~~ 175 (177)
T 1wms_A 163 AAFEEAVRRVLAT 175 (177)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987653
No 40
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=2.1e-35 Score=203.91 Aligned_cols=168 Identities=38% Similarity=0.630 Sum_probs=149.6
Q ss_pred CCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeE--------------------------
Q 030524 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT-------------------------- 57 (175)
Q Consensus 4 ~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 57 (175)
|+....++|+++|++|+|||||+++|++..+...+.++.+.++....+..++..
T Consensus 2 m~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (208)
T 3clv_A 2 MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITN 81 (208)
T ss_dssp CCCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC----------------------------
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccc
Confidence 455678999999999999999999999998888888888878777777766654
Q ss_pred -----------EEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 030524 58 -----------VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126 (175)
Q Consensus 58 -----------~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~ 126 (175)
..+.+||+||++.+...+..++.++|++|+|||++++.+++.+..|+..+....+ .|+++|+||+|
T Consensus 82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D- 158 (208)
T 3clv_A 82 QHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKID- 158 (208)
T ss_dssp ---CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTT-
T ss_pred ccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCC-
Confidence 7899999999999999999999999999999999999999999999999987753 99999999999
Q ss_pred CCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHHHhhhh
Q 030524 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLITVCI 174 (175)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~~~~~~ 174 (175)
...+.....+++.++..++++++++||++|.|++++|.+|.+.+..++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 206 (208)
T 3clv_A 159 KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206 (208)
T ss_dssp CC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 556778889999999999999999999999999999999999887664
No 41
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=9.8e-36 Score=199.45 Aligned_cols=165 Identities=33% Similarity=0.555 Sum_probs=145.3
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
+..++|+++|++|+|||||+++++++.+...+.++.+..+ ......++..+.+.+||+||++++...+..++.++|+++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 80 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEE
Confidence 3579999999999999999999999887777777766443 455677888889999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHT 165 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~ 165 (175)
+|||++++++++.+..|+..+..... .+.|+++++||+|+.+.++....+.+.++..++++++++||++|.|++++|++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (168)
T 1u8z_A 81 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD 160 (168)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence 99999999999999999999988765 58999999999999877788889999999999999999999999999999999
Q ss_pred HHHHHhh
Q 030524 166 LNSLITV 172 (175)
Q Consensus 166 l~~~~~~ 172 (175)
+.+.+..
T Consensus 161 l~~~i~~ 167 (168)
T 1u8z_A 161 LMREIRA 167 (168)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9988764
No 42
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1e-35 Score=204.84 Aligned_cols=170 Identities=32% Similarity=0.433 Sum_probs=147.6
Q ss_pred CCCCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccC
Q 030524 2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 81 (175)
Q Consensus 2 ~~~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 81 (175)
+.|.....++|+++|++|+|||||+++|+++.+...+.++.+..+ ......++..+.+.+||+||++. ...+..++.+
T Consensus 21 ~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~ 98 (196)
T 2atv_A 21 QSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRW 98 (196)
T ss_dssp ------CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHH
T ss_pred hccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhcc
Confidence 455666789999999999999999999999988777777776444 55567788889999999999988 7788889999
Q ss_pred CcEEEEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCC-CH
Q 030524 82 SSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF-NI 159 (175)
Q Consensus 82 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~v 159 (175)
+|++|+|||++++++++.+..|+..+..... .++|+++|+||+|+.+.+++...+++.++..++++++++||++|. |+
T Consensus 99 ~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi 178 (196)
T 2atv_A 99 GEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNI 178 (196)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCH
Confidence 9999999999999999999999998887654 689999999999998778888899999999999999999999999 99
Q ss_pred HHHHHHHHHHHhhh
Q 030524 160 KLCCHTLNSLITVC 173 (175)
Q Consensus 160 ~~~f~~l~~~~~~~ 173 (175)
+++|++|.+.+..+
T Consensus 179 ~~l~~~l~~~i~~~ 192 (196)
T 2atv_A 179 TEIFYELCREVRRR 192 (196)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988764
No 43
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-35 Score=203.97 Aligned_cols=169 Identities=25% Similarity=0.433 Sum_probs=146.9
Q ss_pred CCCCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccC
Q 030524 2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 81 (175)
Q Consensus 2 ~~~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 81 (175)
++++....++|+++|++|+|||||+++++++.+...+.++.+..+ ...+..++..+.+.+||+||++++...+..++.+
T Consensus 11 ~~~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 89 (194)
T 2atx_A 11 AHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPM 89 (194)
T ss_dssp SSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTT
T ss_pred CCCCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCC
Confidence 344445679999999999999999999999887777777776443 4566677888899999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHhcCC-e
Q 030524 82 SSVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-M 147 (175)
Q Consensus 82 ~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~~------------~~~~~~~~~~~~~~~~~-~ 147 (175)
+|++|+|||++++++++.+. .|+..+.... +++|+++|+||+|+.+. +.+...++..++..+++ +
T Consensus 90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 168 (194)
T 2atx_A 90 TDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACC 168 (194)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSC
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcE
Confidence 99999999999999999987 7888887764 48999999999999653 46778889999999998 9
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHhh
Q 030524 148 FIETSAKAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 148 ~~~~s~~~~~~v~~~f~~l~~~~~~ 172 (175)
++++||++|.|++++|+++.+.+..
T Consensus 169 ~~~~Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 169 YVECSALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999988753
No 44
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=1.3e-35 Score=198.84 Aligned_cols=163 Identities=30% Similarity=0.514 Sum_probs=145.7
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (175)
+.++|+++|++|+|||||+++++++.+...+.++.+..+ ......++..+.+.+||+||++++...+..++.++|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 468999999999999999999999887777777776444 4556678888899999999999999999999999999999
Q ss_pred EEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhc-CCeEEEeccCCCCCHHHHHHH
Q 030524 88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKLCCHT 165 (175)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~v~~~f~~ 165 (175)
|||++++.+++.+..|+..+..... .+.|+++++||+|+.+++.....+...++..+ +++++++||++|.|++++|++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD 160 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence 9999999999999999998887643 68999999999999887888888999999888 789999999999999999999
Q ss_pred HHHHHh
Q 030524 166 LNSLIT 171 (175)
Q Consensus 166 l~~~~~ 171 (175)
|.+.+.
T Consensus 161 l~~~i~ 166 (167)
T 1c1y_A 161 LVRQIN 166 (167)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 988764
No 45
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=1.1e-35 Score=207.43 Aligned_cols=168 Identities=27% Similarity=0.441 Sum_probs=145.8
Q ss_pred CCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCc
Q 030524 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (175)
Q Consensus 4 ~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 83 (175)
.+....+||+++|++|+|||||+++|+++.+...+.++.+.++ .....+++..+.+.+||++|++++...+..++.++|
T Consensus 22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 100 (214)
T 3q3j_B 22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD 100 (214)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCe
Confidence 3445679999999999999999999999988888888887655 456667788889999999999999999999999999
Q ss_pred EEEEEEECCChhhHHh-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHhcCC-eEE
Q 030524 84 VAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFI 149 (175)
Q Consensus 84 ~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~------------~~~~~~~~~~~~~~~~~-~~~ 149 (175)
++|+|||++++++++. +..|+..+.... ++.|+++|+||+|+.++ +.+...++..++..+++ +++
T Consensus 101 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 179 (214)
T 3q3j_B 101 AVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYL 179 (214)
T ss_dssp EEEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEE
Confidence 9999999999999999 788999888775 58999999999999753 67889999999999999 999
Q ss_pred EeccCCCCC-HHHHHHHHHHHHhhh
Q 030524 150 ETSAKAGFN-IKLCCHTLNSLITVC 173 (175)
Q Consensus 150 ~~s~~~~~~-v~~~f~~l~~~~~~~ 173 (175)
+|||++|.| ++++|+++.+.+...
T Consensus 180 e~SA~~g~g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 180 EGSAFTSEKSIHSIFRTASMLCLNK 204 (214)
T ss_dssp ECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred EeccCCCcccHHHHHHHHHHHHhcc
Confidence 999999998 999999999887653
No 46
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=3.6e-35 Score=200.37 Aligned_cols=163 Identities=18% Similarity=0.302 Sum_probs=143.2
Q ss_pred CCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCc
Q 030524 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (175)
Q Consensus 4 ~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 83 (175)
+.....+||+++|++|+|||||+++++.+.+...+.++. ..+...+.+++..+.+.+||++|++.+. ++.++|
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~--~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~ 87 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG--GRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD 87 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC--EEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc--ceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence 345678999999999999999999999998877777763 3445778889999999999999998876 788899
Q ss_pred EEEEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCC--CCCCCCHHHHHHHHHhcC-CeEEEeccCCCCCH
Q 030524 84 VAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLV--EKRQVSIEEGEAKSRELN-VMFIETSAKAGFNI 159 (175)
Q Consensus 84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~--~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v 159 (175)
++++|||++++.+|+.+..|+..+..... .++|+++++||+|+. ..+.+...+++.++..++ ++++++||++|.|+
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv 167 (184)
T 3ihw_A 88 AVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNV 167 (184)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCH
Confidence 99999999999999999999999987754 679999999999984 567788899999999997 89999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 030524 160 KLCCHTLNSLITVC 173 (175)
Q Consensus 160 ~~~f~~l~~~~~~~ 173 (175)
+++|+++.+.+...
T Consensus 168 ~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 168 ERVFQDVAQKVVAL 181 (184)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987654
No 47
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=2.4e-35 Score=200.95 Aligned_cols=168 Identities=32% Similarity=0.536 Sum_probs=148.5
Q ss_pred CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 030524 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (175)
Q Consensus 5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (175)
+....++|+++|++|+|||||+++|+++.+...+.++.+.. ....+..++..+.+.+||+||++++...+..++.++|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (187)
T 2a9k_A 14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 92 (187)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceE-EEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCE
Confidence 34567999999999999999999999988777777776644 34556778888899999999999999999999999999
Q ss_pred EEEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHH
Q 030524 85 AVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCC 163 (175)
Q Consensus 85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f 163 (175)
+++|||++++++++.+..|+..+..... .++|+++|+||+|+.+.++....+.+.++..++++++++|+++|.|++++|
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 172 (187)
T 2a9k_A 93 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 172 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHH
Confidence 9999999999999999999999988765 589999999999998777888899999999999999999999999999999
Q ss_pred HHHHHHHhhh
Q 030524 164 HTLNSLITVC 173 (175)
Q Consensus 164 ~~l~~~~~~~ 173 (175)
++|.+.+...
T Consensus 173 ~~l~~~i~~~ 182 (187)
T 2a9k_A 173 FDLMREIRAR 182 (187)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999987653
No 48
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=4.4e-35 Score=203.83 Aligned_cols=166 Identities=41% Similarity=0.713 Sum_probs=150.9
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
...++|+++|++|+|||||+++|++..+...+.++.+.++....+..++..+.+.+||+||++.+...+..++.++|++|
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 97 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII 97 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 34699999999999999999999998888888888888888888888998899999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l 166 (175)
+|||++++.+++.+..|+..+......+.|+++|+||+|+ ..+.....+.+.++..++++++++||++|.|++++|.+|
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 176 (213)
T 3cph_A 98 LVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 176 (213)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999999998877678999999999998 556677888889999999999999999999999999999
Q ss_pred HHHHhhh
Q 030524 167 NSLITVC 173 (175)
Q Consensus 167 ~~~~~~~ 173 (175)
.+.+...
T Consensus 177 ~~~~~~~ 183 (213)
T 3cph_A 177 AKLIQEK 183 (213)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887654
No 49
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=2e-35 Score=200.57 Aligned_cols=168 Identities=36% Similarity=0.578 Sum_probs=135.0
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEEC-CeEEEEEEEeCCCcccccccccccccCCcE
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (175)
....++|+++|++|+|||||++++++..+...+.++.+.++....+..+ +....+.+||+||++.+...+..++.++|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 4567999999999999999999999998888888888878887777776 556789999999999999999999999999
Q ss_pred EEEEEECCChhhHHhHHHHHHHHHHhcC----CCCcEEEEEeCCCCCC-CCCCCHHHHHHHHH-hcCCeEEEeccCCCCC
Q 030524 85 AVVVYDVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVE-KRQVSIEEGEAKSR-ELNVMFIETSAKAGFN 158 (175)
Q Consensus 85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~nk~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~ 158 (175)
+|+|||++++.+++.+..|+..+..... .+.|+++++||+|+.+ .+.....+...++. ..+++++++||++|.|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g 164 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN 164 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence 9999999999999999999999887754 6899999999999853 45567888888888 5678999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 030524 159 IKLCCHTLNSLITVC 173 (175)
Q Consensus 159 v~~~f~~l~~~~~~~ 173 (175)
++++|++|.+.+...
T Consensus 165 i~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 165 VDTAFEEIARSALQQ 179 (182)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887653
No 50
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=4.8e-35 Score=201.09 Aligned_cols=166 Identities=31% Similarity=0.468 Sum_probs=146.7
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (175)
....+||+++|++|+|||||+++++++.+...+.++.+.++. .....++..+.+.+||+||++++...+..++.++|++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 98 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV 98 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence 346799999999999999999999999888788888875554 4667888899999999999999999999999999999
Q ss_pred EEEEECCChhhHHhH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC--CCCCHHHHHHHHHhcCCe-EEEeccCCCCCHHH
Q 030524 86 VVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK--RQVSIEEGEAKSRELNVM-FIETSAKAGFNIKL 161 (175)
Q Consensus 86 i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nk~D~~~~--~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~v~~ 161 (175)
|+|||++++++++.+ ..|+..+.... .+.|+++|+||+|+.++ +.+...+++.++..+++. ++++||++|.|+++
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 177 (194)
T 3reg_A 99 LLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNE 177 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHH
Confidence 999999999999997 66777776554 68999999999998753 678889999999999997 99999999999999
Q ss_pred HHHHHHHHHhhh
Q 030524 162 CCHTLNSLITVC 173 (175)
Q Consensus 162 ~f~~l~~~~~~~ 173 (175)
+|+++.+.+..+
T Consensus 178 l~~~l~~~i~~~ 189 (194)
T 3reg_A 178 VFEKSVDCIFSN 189 (194)
T ss_dssp HHHHHHHHHHCS
T ss_pred HHHHHHHHHHhc
Confidence 999999988654
No 51
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.2e-35 Score=200.71 Aligned_cols=164 Identities=39% Similarity=0.678 Sum_probs=150.2
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (175)
..++|+++|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++|+
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 93 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL 93 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence 46999999999999999999999998888888888888888888899999999999999999999999999999999999
Q ss_pred EEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524 88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166 (175)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l 166 (175)
|||++++.+++.+..|+..+..... .++|+++|+||+|+. .+.....+...++..++++++++||++|.|++++|++|
T Consensus 94 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 172 (195)
T 1x3s_A 94 VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEEL 172 (195)
T ss_dssp EEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999999877653 579999999999984 45677888999999999999999999999999999999
Q ss_pred HHHHhh
Q 030524 167 NSLITV 172 (175)
Q Consensus 167 ~~~~~~ 172 (175)
.+.+..
T Consensus 173 ~~~~~~ 178 (195)
T 1x3s_A 173 VEKIIQ 178 (195)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 988764
No 52
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=1.4e-35 Score=198.45 Aligned_cols=164 Identities=32% Similarity=0.508 Sum_probs=147.4
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (175)
++++|+++|++|+|||||+++++++.+...+.++.+ +........++....+.+||+||++++...+..++.++|++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcc-eeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 468999999999999999999999887777777665 4446677788888899999999999999999999999999999
Q ss_pred EEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524 88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166 (175)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l 166 (175)
|||++++.+++.+..|+..+..... .+.|+++++||+|+.+.++....+.+.++..++++++++||++|.|++++|++|
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 160 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI 160 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence 9999999999999999998887654 689999999999998778888889999999999999999999999999999999
Q ss_pred HHHHhh
Q 030524 167 NSLITV 172 (175)
Q Consensus 167 ~~~~~~ 172 (175)
.+.+..
T Consensus 161 ~~~~~~ 166 (167)
T 1kao_A 161 VRQMNY 166 (167)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 988754
No 53
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=5.4e-35 Score=202.32 Aligned_cols=167 Identities=32% Similarity=0.554 Sum_probs=149.5
Q ss_pred CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 030524 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (175)
Q Consensus 5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (175)
+....++|+++|++|+|||||+++++++.+...+.++.+..+ ...+..++..+.+.+||+||++++...+..++.++|+
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 88 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 88 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence 345679999999999999999999999887777777776443 4566778888899999999999999999999999999
Q ss_pred EEEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHH
Q 030524 85 AVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCC 163 (175)
Q Consensus 85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f 163 (175)
+++|||++++++++.+..|+..+..... .++|+++|+||+|+.+.++....++..++..++++++++||++|.|++++|
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 168 (206)
T 2bov_A 89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 168 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999999999999988764 589999999999998878888899999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 030524 164 HTLNSLITV 172 (175)
Q Consensus 164 ~~l~~~~~~ 172 (175)
++|.+.+..
T Consensus 169 ~~l~~~i~~ 177 (206)
T 2bov_A 169 FDLMREIRA 177 (206)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988765
No 54
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=6.2e-35 Score=202.24 Aligned_cols=166 Identities=38% Similarity=0.637 Sum_probs=148.5
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (175)
....++|+++|++|+|||||+++|++..+...+.++.+.++....+..++..+.+.+||+||++.+...+..++.++|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 34679999999999999999999999988888888888888888888888888999999999999999999999999999
Q ss_pred EEEEECCChhhHHhHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-hcCCeEEEeccCCCCCHH
Q 030524 86 VVVYDVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-ELNVMFIETSAKAGFNIK 160 (175)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~v~ 160 (175)
|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+. .+.....+...++. ..+++++++||++|.|++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 163 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVE 163 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence 999999999999999999998887653 478999999999987 55667778888887 677899999999999999
Q ss_pred HHHHHHHHHHhh
Q 030524 161 LCCHTLNSLITV 172 (175)
Q Consensus 161 ~~f~~l~~~~~~ 172 (175)
++|++|.+.+..
T Consensus 164 ~l~~~l~~~~~~ 175 (207)
T 1vg8_A 164 QAFQTIARNALK 175 (207)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 55
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=4.6e-35 Score=197.68 Aligned_cols=166 Identities=32% Similarity=0.423 Sum_probs=135.6
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccc--ccccccccccCCcE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--FRSLIPSYIRDSSV 84 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~~~~~~~~d~ 84 (175)
...++|+++|++|+|||||+++|++......+ ++.+.+.....+..++..+.+.+||+||++. +......++..+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 35699999999999999999999988765443 3455567777778888888999999999987 56677788899999
Q ss_pred EEEEEECCChhhHHhHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHH
Q 030524 85 AVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCC 163 (175)
Q Consensus 85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f 163 (175)
+++|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+.+++...+.+.++..++++++++||++|.|++++|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence 999999999999999999998887653 3579999999999998878888888889999999999999999999999999
Q ss_pred HHHHHHHhhh
Q 030524 164 HTLNSLITVC 173 (175)
Q Consensus 164 ~~l~~~~~~~ 173 (175)
++|.+.+...
T Consensus 161 ~~l~~~~~~~ 170 (175)
T 2nzj_A 161 EGVVRQLRLR 170 (175)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999887653
No 56
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=4.8e-35 Score=198.37 Aligned_cols=163 Identities=20% Similarity=0.357 Sum_probs=138.6
Q ss_pred CCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCc
Q 030524 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (175)
Q Consensus 4 ~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 83 (175)
|.....+||+++|++|+|||||+++++++.+.. +.++.+ +.+...+.+++..+.+.+||++|+++ ..+++++|
T Consensus 2 m~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d 74 (178)
T 2iwr_A 2 MRSIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTES-EQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWAD 74 (178)
T ss_dssp CCCCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSS-SEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCS
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcc-eeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCC
Confidence 566788999999999999999999999988765 666666 44466777888889999999999876 45788999
Q ss_pred EEEEEEECCChhhHHhHHHHHHHHHHhc---CCCCcEEEEEeCCCCC--CCCCCCHHHHHHHHHhc-CCeEEEeccCCCC
Q 030524 84 VAVVVYDVASRQSFLNTSKWIDEVRTER---GSDVIIVLVGNKTDLV--EKRQVSIEEGEAKSREL-NVMFIETSAKAGF 157 (175)
Q Consensus 84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~iiv~nk~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~ 157 (175)
++|+|||++++++++.+..|+..+.... ..++|+++|+||+|+. ..+.+...+++.++... +++++++||++|.
T Consensus 75 ~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 154 (178)
T 2iwr_A 75 AVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGL 154 (178)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTB
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccC
Confidence 9999999999999999999766665543 3689999999999984 45677888889898876 6899999999999
Q ss_pred CHHHHHHHHHHHHhhh
Q 030524 158 NIKLCCHTLNSLITVC 173 (175)
Q Consensus 158 ~v~~~f~~l~~~~~~~ 173 (175)
|++++|+++.+.+...
T Consensus 155 ~i~~lf~~l~~~~~~~ 170 (178)
T 2iwr_A 155 NVDRVFQEVAQKVVTL 170 (178)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999887653
No 57
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=1e-35 Score=207.73 Aligned_cols=167 Identities=38% Similarity=0.633 Sum_probs=149.7
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCe----------EEEEEEEeCCCccccccccc
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------TVRLQLWDTAGQERFRSLIP 76 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~D~~G~~~~~~~~~ 76 (175)
...++|+++|++|+|||||+++|+++.+...+.++.+.++....+..++. .+.+.+||+||++++...+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 45699999999999999999999998887777888887777777777665 78899999999999999999
Q ss_pred ccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCC
Q 030524 77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA 155 (175)
Q Consensus 77 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 155 (175)
.++.++|++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+.+...+.+.++..++++++++||++
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 182 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAAT 182 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTT
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCC
Confidence 999999999999999999999999999888776554 6899999999999987778888999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhh
Q 030524 156 GFNIKLCCHTLNSLITVC 173 (175)
Q Consensus 156 ~~~v~~~f~~l~~~~~~~ 173 (175)
|.|++++|++|.+.+...
T Consensus 183 g~gi~~l~~~l~~~i~~~ 200 (217)
T 2f7s_A 183 GQNVEKAVETLLDLIMKR 200 (217)
T ss_dssp TBTHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999887654
No 58
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=4.7e-35 Score=196.19 Aligned_cols=163 Identities=29% Similarity=0.397 Sum_probs=123.8
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (175)
.+||+++|++|+|||||++++.+.... ...++.+.+ .......++..+.+.+||++|++.+...+..++.++|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHT-YDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CE-EEEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccc-eEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 589999999999999999999876543 223333333 345667888999999999999999999999999999999999
Q ss_pred EECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524 89 YDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLN 167 (175)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~ 167 (175)
||++++++++.+..|+..+..... .++|+++++||+|+.+++.....+.+.++...+++++++||++|.|++++|+++.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence 999999999999999999887643 6899999999999988888999999999999999999999999999999999999
Q ss_pred HHHhhh
Q 030524 168 SLITVC 173 (175)
Q Consensus 168 ~~~~~~ 173 (175)
+.+...
T Consensus 160 ~~~~~~ 165 (166)
T 3q72_A 160 RQIRLR 165 (166)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 987653
No 59
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=4.7e-36 Score=207.83 Aligned_cols=167 Identities=27% Similarity=0.449 Sum_probs=112.8
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcC--CCCCcccccceeeEEEEEEEECCe--EEEEEEEeCCCcccccccccccccCC
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYD--KFDNTYQATIGIDFLSKTMYLEDR--TVRLQLWDTAGQERFRSLIPSYIRDS 82 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~ 82 (175)
...++|+++|++|+|||||+++|++. .+...+.++.+.++....+..++. .+.+.+||+||++.+...+..++.++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 45689999999999999999999998 666777788877777888888876 88999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHhHHHHHHHHHHhcC---CCCcEEEEEeCCCCCC-CCCCCHHHHHHHHHhcCCeEEEeccCC-CC
Q 030524 83 SVAVVVYDVASRQSFLNTSKWIDEVRTERG---SDVIIVLVGNKTDLVE-KRQVSIEEGEAKSRELNVMFIETSAKA-GF 157 (175)
Q Consensus 83 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~iiv~nk~D~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~ 157 (175)
|++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+.+ .+.+...+++.++..++++++++||++ |.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 177 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK 177 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 999999999999999999999999988876 6899999999999987 678888999999999999999999999 99
Q ss_pred CHHHHHHHHHHHHhhh
Q 030524 158 NIKLCCHTLNSLITVC 173 (175)
Q Consensus 158 ~v~~~f~~l~~~~~~~ 173 (175)
|++++|++|.+.+...
T Consensus 178 gi~~l~~~i~~~~~~~ 193 (208)
T 2yc2_C 178 DADAPFLSIATTFYRN 193 (208)
T ss_dssp --CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999887653
No 60
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=2.1e-35 Score=205.46 Aligned_cols=169 Identities=31% Similarity=0.503 Sum_probs=145.9
Q ss_pred CCCCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccC
Q 030524 2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 81 (175)
Q Consensus 2 ~~~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 81 (175)
++|+....++|+++|++|+|||||+++++++.+...+.++.+.. +...+..++..+.+.+||+||++++..++..++.+
T Consensus 2 s~m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 80 (212)
T 2j0v_A 2 SHMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN-FSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRG 80 (212)
T ss_dssp CCCSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCC-EEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTT
T ss_pred CCCCcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCcccee-EEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccC
Confidence 46777788999999999999999999999988877777777644 35566678888899999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCC--------CCHHHHHHHHHhcCC-eEEEe
Q 030524 82 SSVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--------VSIEEGEAKSRELNV-MFIET 151 (175)
Q Consensus 82 ~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~--------~~~~~~~~~~~~~~~-~~~~~ 151 (175)
+|++|+|||++++++++.+. .|+..+.... ++.|+++|+||+|+.+.+. +...++..++..+++ +++++
T Consensus 81 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 159 (212)
T 2j0v_A 81 ADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIEC 159 (212)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEEC
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEc
Confidence 99999999999999999986 7888887765 4899999999999865433 367888899999996 99999
Q ss_pred ccCCCCCHHHHHHHHHHHHhh
Q 030524 152 SAKAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 152 s~~~~~~v~~~f~~l~~~~~~ 172 (175)
||++|+|++++|+++.+.+..
T Consensus 160 Sa~~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 160 SSKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC
T ss_pred cCCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999988764
No 61
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=2.3e-34 Score=196.49 Aligned_cols=165 Identities=30% Similarity=0.496 Sum_probs=144.5
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
...++|+++|++|+|||||+++|+++.+...+.++.. +........++..+.+.+||+||++.+...+..++.++|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 3579999999999999999999999887777777664 555667778888899999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHT 165 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~ 165 (175)
+|||++++.+++.+..|+..+..... .+.|+++++||+|+. .+.........++..++++++++||++|.|++++|++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 159 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT 159 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS-SCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999988654 689999999999986 5567788899999999999999999999999999999
Q ss_pred HHHHHhhh
Q 030524 166 LNSLITVC 173 (175)
Q Consensus 166 l~~~~~~~ 173 (175)
|.+.+...
T Consensus 160 l~~~~~~~ 167 (189)
T 4dsu_A 160 LVREIRKH 167 (189)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99887643
No 62
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-34 Score=201.67 Aligned_cols=166 Identities=28% Similarity=0.399 Sum_probs=139.6
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCC-CCcccccceeeEEEEEEEECCeEEEEEEEeCCCccc-ccccccccccCCcE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-FRSLIPSYIRDSSV 84 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d~ 84 (175)
...+||+++|++|+|||||+++|++... .....++.+.+++...+.+++..+.+.+||++|.+. +..+...++..+|+
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 4569999999999999999999997432 122234466677777788899999999999999876 55567778899999
Q ss_pred EEEEEECCChhhHHhHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHH
Q 030524 85 AVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCC 163 (175)
Q Consensus 85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f 163 (175)
+|+|||++++++|+.+..|+..+.... ..++|+++|+||+|+.+.+++..++++.++..++++++++||++|.|++++|
T Consensus 115 ~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf 194 (211)
T 2g3y_A 115 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF 194 (211)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 999999999999999999988876542 2579999999999998777888888888999999999999999999999999
Q ss_pred HHHHHHHhh
Q 030524 164 HTLNSLITV 172 (175)
Q Consensus 164 ~~l~~~~~~ 172 (175)
.++.+.+..
T Consensus 195 ~~l~~~i~~ 203 (211)
T 2g3y_A 195 EGIVRQVRL 203 (211)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988754
No 63
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=2.1e-34 Score=198.84 Aligned_cols=167 Identities=32% Similarity=0.460 Sum_probs=138.0
Q ss_pred CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 030524 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (175)
Q Consensus 5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (175)
.....++|+++|++|+|||||+++++++.+...+.++.+ +.+...+..++..+.+.+||+||++++...+..++.++|+
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAF-DNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI 94 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSS-EEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccc-ceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence 345679999999999999999999999887777777775 4445667788888899999999999999999999999999
Q ss_pred EEEEEECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHhcCC-eEEE
Q 030524 85 AVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELNV-MFIE 150 (175)
Q Consensus 85 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~ 150 (175)
+|+|||++++++++.+. .|+..+.... .++|+++|+||+|+.+ .+.+...+...++..+++ ++++
T Consensus 95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 173 (201)
T 2q3h_A 95 FLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIE 173 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence 99999999999999987 7888887765 4899999999999865 356778889999999997 9999
Q ss_pred eccCCCCCHHHHHHHHHHHHhhh
Q 030524 151 TSAKAGFNIKLCCHTLNSLITVC 173 (175)
Q Consensus 151 ~s~~~~~~v~~~f~~l~~~~~~~ 173 (175)
+||++|.|++++|+++.+.+...
T Consensus 174 ~Sa~~g~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 174 CSALTQKNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999887653
No 64
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=8.6e-35 Score=198.34 Aligned_cols=165 Identities=24% Similarity=0.458 Sum_probs=143.4
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (175)
....++|+++|++|+|||||+++|+++.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..++.++|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 45679999999999999999999999888777778776554 45566788888999999999999999999999999999
Q ss_pred EEEEECCChhhHHhH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHhcC-CeEEEe
Q 030524 86 VVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELN-VMFIET 151 (175)
Q Consensus 86 i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nk~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 151 (175)
|+|||++++++++.+ ..|+..+.... ++.|+++++||+|+.++ +.+..+++..+++.++ ++++++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 161 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 161 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence 999999999999998 67888887654 58999999999998642 5677888999999988 699999
Q ss_pred ccC-CCCCHHHHHHHHHHHHhh
Q 030524 152 SAK-AGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 152 s~~-~~~~v~~~f~~l~~~~~~ 172 (175)
||+ +|.|++++|+++.+.+..
T Consensus 162 Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 162 SALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp BTTTBHHHHHHHHHHHHHHHHT
T ss_pred eecCCCcCHHHHHHHHHHHHhc
Confidence 999 689999999999998764
No 65
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=5.4e-34 Score=195.14 Aligned_cols=167 Identities=29% Similarity=0.495 Sum_probs=135.5
Q ss_pred CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 030524 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (175)
Q Consensus 5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (175)
+....++|+++|++|+|||||+++|+++.....+.++.+ +.....+..++..+.+.+||+||++++...+..++.++|+
T Consensus 17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (190)
T 3con_A 17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 95 (190)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCC-----------CTTCSE
T ss_pred cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccc-eEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCE
Confidence 445679999999999999999999999887766666665 3445566778888899999999999999999999999999
Q ss_pred EEEEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHH
Q 030524 85 AVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCC 163 (175)
Q Consensus 85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f 163 (175)
+++|||++++.+++.+..|+..+..... .++|+++|+||+|+.+ +.....+.++++..++++++++|+++|.|++++|
T Consensus 96 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 174 (190)
T 3con_A 96 FLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAF 174 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999999999998887654 5799999999999865 5667888999999999999999999999999999
Q ss_pred HHHHHHHhhh
Q 030524 164 HTLNSLITVC 173 (175)
Q Consensus 164 ~~l~~~~~~~ 173 (175)
++|.+.+...
T Consensus 175 ~~l~~~~~~~ 184 (190)
T 3con_A 175 YTLVREIRQY 184 (190)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999887653
No 66
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=2e-34 Score=196.31 Aligned_cols=164 Identities=29% Similarity=0.473 Sum_probs=144.1
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
+..++|+++|++|+|||||+++++++.+...+.++.+. ........++..+.+.+||+||++++...+..++.++|+++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCC-EEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccc-eeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 46799999999999999999999998877777777653 34556678888999999999999999999999999999999
Q ss_pred EEEECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHhcCC-eEEEec
Q 030524 87 VVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETS 152 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s 152 (175)
+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+. +.+...+...++..+++ +++++|
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 999999999999987 6888887765 38999999999998653 56778888899999997 999999
Q ss_pred cCCCCCHHHHHHHHHHHHhh
Q 030524 153 AKAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 153 ~~~~~~v~~~f~~l~~~~~~ 172 (175)
|++|.|++++|+++.+.+..
T Consensus 161 a~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHSC
T ss_pred CCCccCHHHHHHHHHHHHhc
Confidence 99999999999999988754
No 67
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=4.5e-35 Score=204.64 Aligned_cols=169 Identities=30% Similarity=0.465 Sum_probs=146.8
Q ss_pred CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECC-eEEEEEEEeCCCcccccccccccccCCc
Q 030524 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (175)
Q Consensus 5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d 83 (175)
.....+||+++|++|+|||||+++|+++.+...+.++.+.+.........+ ..+.+.+||+||++.+...+..++.++|
T Consensus 7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (218)
T 4djt_A 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS 86 (218)
T ss_dssp ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence 344679999999999999999999998887777788887777666665544 4488999999999999999999999999
Q ss_pred EEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHH
Q 030524 84 VAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCC 163 (175)
Q Consensus 84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f 163 (175)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.........++...+++++++||++|.|++++|
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 166 (218)
T 4djt_A 87 GAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF 166 (218)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Confidence 99999999999999999999999998887789999999999998877888899999999999999999999999999999
Q ss_pred HHHHHHHhhh
Q 030524 164 HTLNSLITVC 173 (175)
Q Consensus 164 ~~l~~~~~~~ 173 (175)
.+|.+.+...
T Consensus 167 ~~l~~~~~~~ 176 (218)
T 4djt_A 167 LHLARIFTGR 176 (218)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHhcc
Confidence 9999887643
No 68
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=1.3e-34 Score=200.86 Aligned_cols=164 Identities=24% Similarity=0.463 Sum_probs=143.4
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
...+||+++|++|+|||||+++|++..+...+.++.+.++ ...+..++..+.+.+||++|++.+...+..++.++|++|
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 104 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 104 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence 4579999999999999999999999988877778776554 455667788889999999999999999999999999999
Q ss_pred EEEECCChhhHHhH-HHHHHHHHHhcCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHhcC-CeEEEec
Q 030524 87 VVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELN-VMFIETS 152 (175)
Q Consensus 87 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nk~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~s 152 (175)
+|||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+ .+.+...+++.+++.++ ++++++|
T Consensus 105 lv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 183 (205)
T 1gwn_A 105 ICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 183 (205)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEee
Confidence 99999999999998 78888887664 5899999999999864 25677888999999988 6999999
Q ss_pred cC-CCCCHHHHHHHHHHHHhh
Q 030524 153 AK-AGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 153 ~~-~~~~v~~~f~~l~~~~~~ 172 (175)
|+ +|.|++++|+++.+.+..
T Consensus 184 Ak~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 184 ALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp TTTCHHHHHHHHHHHHHHHHH
T ss_pred eccCCcCHHHHHHHHHHHHhh
Confidence 99 689999999999998764
No 69
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=3.5e-37 Score=212.67 Aligned_cols=167 Identities=38% Similarity=0.659 Sum_probs=143.2
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
...+||+++|++|+|||||+++|+++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..++.++|++|
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 34699999999999999999999998888888888888888888889999899999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l 166 (175)
+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.....+.+.++..++++++++||++|.|++++|.+|
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l 190 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 190 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999987766789999999999998777777777888999999999999999999999999999
Q ss_pred HHHHhhh
Q 030524 167 NSLITVC 173 (175)
Q Consensus 167 ~~~~~~~ 173 (175)
.+.+...
T Consensus 191 ~~~l~~~ 197 (199)
T 3l0i_B 191 AAEIKKR 197 (199)
T ss_dssp TTTTTTT
T ss_pred HHHHHHh
Confidence 8877653
No 70
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2e-34 Score=193.87 Aligned_cols=164 Identities=29% Similarity=0.457 Sum_probs=143.7
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (175)
+.++|+++|++|+|||||+++++++.+...+.++.+.++ ......++..+.+.+||+||++++...+..++.++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 468999999999999999999999887767777766443 3455677888899999999999999999999999999999
Q ss_pred EEECCChhhHHhHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHH
Q 030524 88 VYDVASRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHT 165 (175)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~ 165 (175)
|||++++++++.+..|+..+..... .+.|+++++||+|+.+.++....+.+.++..++++++++||++|.|++++|++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence 9999999999999999888877643 57999999999999877788888889999999999999999999999999999
Q ss_pred HHHHHhh
Q 030524 166 LNSLITV 172 (175)
Q Consensus 166 l~~~~~~ 172 (175)
|.+.+..
T Consensus 161 l~~~~~~ 167 (172)
T 2erx_A 161 LLNLEKR 167 (172)
T ss_dssp HHHTCCS
T ss_pred HHHHHhh
Confidence 9887643
No 71
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=100.00 E-value=1.1e-35 Score=202.04 Aligned_cols=168 Identities=33% Similarity=0.513 Sum_probs=127.7
Q ss_pred CCCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCC
Q 030524 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS 82 (175)
Q Consensus 3 ~~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 82 (175)
+|+....++|+++|++|+|||||+++++.+.+...+.++.+..+ ......++..+.+.+||+||++++...+..++.++
T Consensus 2 s~~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 80 (182)
T 3bwd_D 2 SMSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGA 80 (182)
T ss_dssp -----CCCEEEEECSTTSSHHHHHHHHHHSCCC----------C-BCCCC-------CEEECCCC-CTTTTTGGGGGTTC
T ss_pred CCCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhccCC
Confidence 46667789999999999999999999999887766666665333 23344566677889999999999999999999999
Q ss_pred cEEEEEEECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCC----------CCHHHHHHHHHhcCC-eEEE
Q 030524 83 SVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQ----------VSIEEGEAKSRELNV-MFIE 150 (175)
Q Consensus 83 d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~ 150 (175)
|++++|||++++.+++.+. .|+..+.... .+.|+++++||+|+.+.+. +...++..++..+++ ++++
T Consensus 81 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 159 (182)
T 3bwd_D 81 DVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIE 159 (182)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEE
Confidence 9999999999999999987 6888887765 4899999999999865443 467888899999997 9999
Q ss_pred eccCCCCCHHHHHHHHHHHHhh
Q 030524 151 TSAKAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 151 ~s~~~~~~v~~~f~~l~~~~~~ 172 (175)
+||++|.|++++|+++.+.+..
T Consensus 160 ~Sa~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 160 CSSKSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp CCTTTCTTHHHHHHHHHHHHSC
T ss_pred EECCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999988753
No 72
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=3.8e-34 Score=199.62 Aligned_cols=164 Identities=30% Similarity=0.502 Sum_probs=124.2
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
...++|+++|++|+|||||+++|+++.+...+.++.. +.+.....+++..+.+.+||+||++++...+..++.++|++|
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVF-ERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCC-EEEEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccc-eeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 4579999999999999999999999887777777665 444556678888899999999999999999999999999999
Q ss_pred EEEECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHhcCC-eEEEec
Q 030524 87 VVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETS 152 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s 152 (175)
+|||++++.+++.+. .|+..+.... .++|+++|+||+|+.+. +.+...++..++..+++ +++++|
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 189 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS 189 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence 999999999999986 6888887654 57999999999998754 36677888999999998 999999
Q ss_pred cCCCCCHHHHHHHHHHHHhh
Q 030524 153 AKAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 153 ~~~~~~v~~~f~~l~~~~~~ 172 (175)
|++|.|++++|++|.+.+..
T Consensus 190 A~~g~gi~el~~~l~~~~~~ 209 (214)
T 2j1l_A 190 ARLHDNVHAVFQEAAEVALS 209 (214)
T ss_dssp TTTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999988765
No 73
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=1.3e-33 Score=188.64 Aligned_cols=163 Identities=29% Similarity=0.491 Sum_probs=143.6
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (175)
..++|+++|++|+|||||+++++++.....+.++.+ +........++..+.+.+||+||++++...+..++.++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 80 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccc-eEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence 358999999999999999999999887766666665 3445566778888899999999999999999999999999999
Q ss_pred EEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHH
Q 030524 88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTL 166 (175)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l 166 (175)
|||++++.+++.+..|+..+..... .+.|+++++||+|+.+ +.....+.++++..++++++++|+++|.|++++|.++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (166)
T 2ce2_X 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999998887654 4799999999999865 5667888899999999999999999999999999999
Q ss_pred HHHHhh
Q 030524 167 NSLITV 172 (175)
Q Consensus 167 ~~~~~~ 172 (175)
.+.+..
T Consensus 160 ~~~~~~ 165 (166)
T 2ce2_X 160 VREIRQ 165 (166)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 988754
No 74
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=1.7e-33 Score=194.49 Aligned_cols=162 Identities=31% Similarity=0.510 Sum_probs=142.6
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (175)
..+||+++|++|+|||||++++.++.+...+.++.+.++. ..+..++..+.+.+||+||++++...+..++.++|++|+
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence 5699999999999999999999998887777777765554 346778888899999999999999999999999999999
Q ss_pred EEECCChhhHHhH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHhcCC-eEEEecc
Q 030524 88 VYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETSA 153 (175)
Q Consensus 88 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nk~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~ 153 (175)
|||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+. +.+...++..++...++ +++++||
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 181 (201)
T 2gco_A 103 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSA 181 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeC
Confidence 9999999999998 67777776654 58999999999998754 45778888999999998 9999999
Q ss_pred CCCCCHHHHHHHHHHHHh
Q 030524 154 KAGFNIKLCCHTLNSLIT 171 (175)
Q Consensus 154 ~~~~~v~~~f~~l~~~~~ 171 (175)
++|.|++++|++|.+.+.
T Consensus 182 ~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 182 KTKEGVREVFEMATRAGL 199 (201)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999998765
No 75
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=100.00 E-value=4.6e-34 Score=197.85 Aligned_cols=162 Identities=30% Similarity=0.484 Sum_probs=140.2
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
...+||+++|++|+|||||+++++.+.+...+.++.+ +........++..+.+.+||+||++++...+..++.++|++|
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 4679999999999999999999999888777777775 555666778888889999999999999999999999999999
Q ss_pred EEEECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC------------CCCHHHHHHHHHhcCC-eEEEec
Q 030524 87 VVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKR------------QVSIEEGEAKSRELNV-MFIETS 152 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~s 152 (175)
+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.. .+...++..++...++ +++++|
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 185 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEee
Confidence 999999999999987 7888777765 689999999999986543 3778888999999997 699999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 030524 153 AKAGFNIKLCCHTLNSLI 170 (175)
Q Consensus 153 ~~~~~~v~~~f~~l~~~~ 170 (175)
|++|+|++++|+++.+.+
T Consensus 186 A~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TTTCTTHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998865
No 76
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.7e-33 Score=195.36 Aligned_cols=165 Identities=31% Similarity=0.500 Sum_probs=138.3
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
...++|+++|++|+|||||+++|+++.+...+.++.+.++. ..+..++..+.+.+||+||++++...+..++.++|++|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 45789999999999999999999998887777777765544 34677888889999999999999999999999999999
Q ss_pred EEEECCChhhHHhH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHhcCC-eEEEec
Q 030524 87 VVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETS 152 (175)
Q Consensus 87 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nk~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s 152 (175)
+|||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+. +.+...++..++...++ +++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 99999999999998 67877776654 58999999999998654 45778888899999998 999999
Q ss_pred cCCCCCHHHHHHHHHHHHhhh
Q 030524 153 AKAGFNIKLCCHTLNSLITVC 173 (175)
Q Consensus 153 ~~~~~~v~~~f~~l~~~~~~~ 173 (175)
|++|.|++++|++|.+.+...
T Consensus 181 A~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp TTTCTTHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999987643
No 77
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=8.5e-34 Score=195.30 Aligned_cols=166 Identities=30% Similarity=0.472 Sum_probs=143.5
Q ss_pred CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 030524 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (175)
Q Consensus 5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (175)
+....++|+++|++|+|||||+++|+++.+...+.++.+.++ ......++..+.+.+||+||++++...+..++.++|+
T Consensus 4 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 82 (199)
T 2gf0_A 4 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHA 82 (199)
T ss_dssp -CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSE
T ss_pred cCCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCE
Confidence 445679999999999999999999999887777777766443 3455678888899999999999999999999999999
Q ss_pred EEEEEECCChhhHHhHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHH
Q 030524 85 AVVVYDVASRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLC 162 (175)
Q Consensus 85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~ 162 (175)
+++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+ +.....+...++..++++++++||++|.|++++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 161 (199)
T 2gf0_A 83 FILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKEL 161 (199)
T ss_dssp EEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Confidence 9999999999999999988887776543 4789999999999864 566778888899999999999999999999999
Q ss_pred HHHHHHHHhh
Q 030524 163 CHTLNSLITV 172 (175)
Q Consensus 163 f~~l~~~~~~ 172 (175)
|++|.+.+..
T Consensus 162 ~~~l~~~~~~ 171 (199)
T 2gf0_A 162 FQELLTLETR 171 (199)
T ss_dssp HHHHHHHCSS
T ss_pred HHHHHHHHhh
Confidence 9999987643
No 78
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=100.00 E-value=1.2e-34 Score=203.06 Aligned_cols=166 Identities=27% Similarity=0.513 Sum_probs=147.6
Q ss_pred CCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCc
Q 030524 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (175)
Q Consensus 4 ~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 83 (175)
......+||+++|++|+|||||+++++.+.+...+.++.+.+........++..+.+.+||+||++.+...+..++.++|
T Consensus 10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 89 (221)
T 3gj0_A 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQ 89 (221)
T ss_dssp TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCC
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCC
Confidence 34456799999999999999999998877777777888888888888889999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHH
Q 030524 84 VAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCC 163 (175)
Q Consensus 84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f 163 (175)
++|+|||++++.+++.+..|+..+.... .++|+++|+||+|+.+.... .+...++...+++++++||++|.|++++|
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 166 (221)
T 3gj0_A 90 CAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPF 166 (221)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCSSC--GGGCCHHHHHTCEEEECBGGGTBTTTHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCcccccccc--HHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999999999999999998875 48999999999998654432 25667788889999999999999999999
Q ss_pred HHHHHHHhh
Q 030524 164 HTLNSLITV 172 (175)
Q Consensus 164 ~~l~~~~~~ 172 (175)
.+|.+.+..
T Consensus 167 ~~l~~~l~~ 175 (221)
T 3gj0_A 167 LWLARKLIG 175 (221)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999988764
No 79
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=100.00 E-value=3.9e-33 Score=191.49 Aligned_cols=165 Identities=28% Similarity=0.454 Sum_probs=136.8
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCC--CCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccc-ccccccccccCCc
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDK--FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-FRSLIPSYIRDSS 83 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d 83 (175)
...+||+++|++|+|||||+++|++.. +... .++.+.++....+.+++..+.+.+||++|.+. +..+...++..+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc-ccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 346899999999999999999999633 2333 34456677777788899988999999999776 5567778888999
Q ss_pred EEEEEEECCChhhHHhHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHH
Q 030524 84 VAVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLC 162 (175)
Q Consensus 84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~ 162 (175)
++++|||++++++|+.+..|+..+.... ..++|+++++||+|+.+.+.+...+++.++..++++++++||++|.|++++
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence 9999999999999999999988877653 357999999999999877778888888888889999999999999999999
Q ss_pred HHHHHHHHhh
Q 030524 163 CHTLNSLITV 172 (175)
Q Consensus 163 f~~l~~~~~~ 172 (175)
|.++.+.+..
T Consensus 163 f~~l~~~~~~ 172 (192)
T 2cjw_A 163 FEGIVRQVRL 172 (192)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999987753
No 80
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=100.00 E-value=1.4e-34 Score=198.77 Aligned_cols=164 Identities=22% Similarity=0.233 Sum_probs=136.4
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCCCCc-----------ccccceeeEEEEEE-EECCeEEEEEEEeCCCcccccc
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT-----------YQATIGIDFLSKTM-YLEDRTVRLQLWDTAGQERFRS 73 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~~~~~ 73 (175)
....+||+++|++|+|||||++.+.+. +... +.++.+.++..... ..++..+.+.+||+||++++..
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 89 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred cccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence 345799999999999999999766554 3333 23455555555444 5677788999999999999999
Q ss_pred cccccccCCcEEEEEEECC------ChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC-
Q 030524 74 LIPSYIRDSSVAVVVYDVA------SRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV- 146 (175)
Q Consensus 74 ~~~~~~~~~d~~i~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~- 146 (175)
.+..+++++|++|+|||++ +.++++.+..|+..+. ....++|+++|+||+|+.+ ....+++++++..+++
T Consensus 90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~ 166 (198)
T 3t1o_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-LTLDDVPIVIQVNKRDLPD--ALPVEMVRAVVDPEGKF 166 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCTTSSCEEEEEECTTSTT--CCCHHHHHHHHCTTCCS
T ss_pred HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-cccCCCCEEEEEEchhccc--ccCHHHHHHHHHhcCCc
Confidence 9999999999999999999 6678888888888773 2337899999999999855 4778899999999999
Q ss_pred eEEEeccCCCCCHHHHHHHHHHHHhhh
Q 030524 147 MFIETSAKAGFNIKLCCHTLNSLITVC 173 (175)
Q Consensus 147 ~~~~~s~~~~~~v~~~f~~l~~~~~~~ 173 (175)
+++++||++|.|++++|.+|.+.+..+
T Consensus 167 ~~~~~Sa~~~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 167 PVLEAVATEGKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp CEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred eEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence 999999999999999999999988765
No 81
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=100.00 E-value=1.2e-33 Score=194.50 Aligned_cols=164 Identities=17% Similarity=0.228 Sum_probs=129.5
Q ss_pred CCCCCceeEEEECCCCCCHHHHHHHHhcCCCCC-cccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCC
Q 030524 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS 82 (175)
Q Consensus 4 ~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 82 (175)
.+.....+|+++|++|+|||||+++|+++.+.. .+.++.+..... +. +..+.+.+||+||++++...+..++.++
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 87 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVET--FE--KGRVAFTVFDMGGAKKFRGLWETYYDNI 87 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEE--EE--ETTEEEEEEEECCSGGGGGGGGGGCTTC
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEE--EE--eCCEEEEEEECCCCHhHHHHHHHHHhcC
Confidence 345578999999999999999999999998877 777777744433 22 3446899999999999999999999999
Q ss_pred cEEEEEEECCChhhHHhHHHHHHHHHHhcC--------CCCcEEEEEeCCCCCCCCCCCHHHHHH------HHHhcCCeE
Q 030524 83 SVAVVVYDVASRQSFLNTSKWIDEVRTERG--------SDVIIVLVGNKTDLVEKRQVSIEEGEA------KSRELNVMF 148 (175)
Q Consensus 83 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--------~~~~~iiv~nk~D~~~~~~~~~~~~~~------~~~~~~~~~ 148 (175)
|++|+|||++++++|+.+..|+..+..... .++|+++|+||+|+.+... ..+... ++...++++
T Consensus 88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~ 165 (199)
T 4bas_A 88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT--AAELVEILDLTTLMGDHPFVI 165 (199)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC--HHHHHHHHTHHHHHTTSCEEE
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC--HHHHHHHhcchhhccCCeeEE
Confidence 999999999999999999999988876522 2799999999999865432 222211 124567899
Q ss_pred EEeccCCCCCHHHHHHHHHHHHhhh
Q 030524 149 IETSAKAGFNIKLCCHTLNSLITVC 173 (175)
Q Consensus 149 ~~~s~~~~~~v~~~f~~l~~~~~~~ 173 (175)
+++||++|.|++++|++|.+.+...
T Consensus 166 ~~~Sa~~g~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 166 FASNGLKGTGVHEGFSWLQETASRQ 190 (199)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred EEeeCCCccCHHHHHHHHHHHHHHH
Confidence 9999999999999999999887654
No 82
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=100.00 E-value=1.2e-31 Score=184.88 Aligned_cols=165 Identities=35% Similarity=0.669 Sum_probs=147.4
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (175)
..++|+++|++|+|||||++++++..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..++.+++++++
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 83 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL 83 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence 35899999999999999999999988877778888888888888899998999999999999999999999999999999
Q ss_pred EEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLN 167 (175)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~ 167 (175)
|||++++.+++.+..|+..+......+.|+++++||+|+.+.+.....+++.++...++.++++|++++.|++++|++|.
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~ 163 (199)
T 2f9l_A 84 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNIL 163 (199)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999998888766556799999999999987777788889999999999999999999999999999999
Q ss_pred HHHhh
Q 030524 168 SLITV 172 (175)
Q Consensus 168 ~~~~~ 172 (175)
+.+..
T Consensus 164 ~~~~~ 168 (199)
T 2f9l_A 164 TEIYR 168 (199)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 83
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=100.00 E-value=1.5e-32 Score=189.35 Aligned_cols=157 Identities=21% Similarity=0.246 Sum_probs=123.4
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
.+.++|+++|++|+|||||++++.++.+. .+.++.+.+ ...+..++ ..+.+|||||++.+...+..+++++|+++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 97 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV 97 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence 45689999999999999999999987653 345555443 23455566 68999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHh-----------------cCCeE
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-----------------LNVMF 148 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~-----------------~~~~~ 148 (175)
+|||++++++|+.+..|+..+.... ..++|+++++||+|+.+ ....++..+++.. .++++
T Consensus 98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (198)
T 1f6b_A 98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV 175 (198)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence 9999999999999999999887653 36899999999999864 5566777776653 34689
Q ss_pred EEeccCCCCCHHHHHHHHHHHH
Q 030524 149 IETSAKAGFNIKLCCHTLNSLI 170 (175)
Q Consensus 149 ~~~s~~~~~~v~~~f~~l~~~~ 170 (175)
++|||++|+|++++|++|.+.+
T Consensus 176 ~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 176 FMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp EECBTTTTBSHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 9999999999999999998654
No 84
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=100.00 E-value=4.3e-32 Score=185.95 Aligned_cols=156 Identities=23% Similarity=0.241 Sum_probs=127.9
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
.+.++|+++|++|+|||||++++.++.+. .+.++.+.+ ...+..++ +.+.+||+||++.+...+..++.++|+++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 95 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV 95 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 35689999999999999999999987754 445555543 34555666 68999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHh------------cCCeEEEecc
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE------------LNVMFIETSA 153 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~s~ 153 (175)
+|||++++++++.+..|+..+.... ..+.|+++++||+|+.+ ....++..+.+.. .+++++++||
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 173 (190)
T 1m2o_B 96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV 173 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence 9999999999999999998887643 26899999999999865 4556666665543 3568999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 030524 154 KAGFNIKLCCHTLNSL 169 (175)
Q Consensus 154 ~~~~~v~~~f~~l~~~ 169 (175)
++|+|++++|++|.+.
T Consensus 174 ~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 174 VMRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTTBSHHHHHHHHHTT
T ss_pred CcCCCHHHHHHHHHhh
Confidence 9999999999998764
No 85
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.5e-32 Score=185.68 Aligned_cols=162 Identities=20% Similarity=0.282 Sum_probs=130.2
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCC-CCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDK-FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (175)
.+.++|+++|++|+|||||+++|++.. ....+.++.+ .....+..++ ..+.+||+||++++...+..++.++|++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAI 94 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 457999999999999999999999887 4555666665 3344444554 6799999999999999999999999999
Q ss_pred EEEEECCChhhHHhHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----hcCCeEEEeccCCCC
Q 030524 86 VVVYDVASRQSFLNTSKWIDEVRTERG---SDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGF 157 (175)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~ 157 (175)
|+|||++++++++.+..|+..+..... .+.|+++|+||+|+.+ .....+....+. ..+++++++||++|.
T Consensus 95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (190)
T 2h57_A 95 IFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD--AVTSVKVSQLLCLENIKDKPWHICASDAIKGE 172 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc--CCCHHHHHHHhChhhccCCceEEEEccCCCCc
Confidence 999999999999999999988877643 4799999999999864 334555555553 246789999999999
Q ss_pred CHHHHHHHHHHHHhhhh
Q 030524 158 NIKLCCHTLNSLITVCI 174 (175)
Q Consensus 158 ~v~~~f~~l~~~~~~~~ 174 (175)
|++++|++|.+.+....
T Consensus 173 gi~~l~~~l~~~i~~~k 189 (190)
T 2h57_A 173 GLQEGVDWLQDQIQTVK 189 (190)
T ss_dssp THHHHHHHHHHHC----
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999998876544
No 86
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=100.00 E-value=9.4e-33 Score=185.69 Aligned_cols=159 Identities=21% Similarity=0.313 Sum_probs=127.6
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (175)
..++|+++|++|+|||||+++++++.+. .+.++.+.. ...+..+ ...+.+||+||++.+...+..++.++|++++
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 80 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFN--VETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY 80 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEE--EEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccc--eEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 4699999999999999999999987764 345555533 3344444 3679999999999999999999999999999
Q ss_pred EEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHH-----HHhcCCeEEEeccCCCCCHHH
Q 030524 88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAK-----SRELNVMFIETSAKAGFNIKL 161 (175)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~v~~ 161 (175)
|||++++++++.+..|+..+..... .+.|+++++||+|+.+... ..+.... +...+++++++||++|.|+++
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 158 (171)
T 1upt_A 81 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMANSLGLPALKDRKWQIFKTSATKGTGLDE 158 (171)
T ss_dssp EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC--HHHHHHHhCchhccCCceEEEECcCCCCcCHHH
Confidence 9999999999999998888876533 6899999999999865432 2222222 334467899999999999999
Q ss_pred HHHHHHHHHhhh
Q 030524 162 CCHTLNSLITVC 173 (175)
Q Consensus 162 ~f~~l~~~~~~~ 173 (175)
+|++|.+.+..+
T Consensus 159 l~~~l~~~i~~~ 170 (171)
T 1upt_A 159 AMEWLVETLKSR 170 (171)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHhhc
Confidence 999999887653
No 87
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=100.00 E-value=5.6e-32 Score=184.50 Aligned_cols=160 Identities=23% Similarity=0.321 Sum_probs=130.7
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
...++|+++|++|+|||||+++++++. ...+.++.+... ..+..++ ..+.+||+||++++...+..+++++|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~--~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNI--KTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEE--EEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 567999999999999999999999887 666677766443 3344444 67999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----hcCCeEEEeccCCCCCHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNIK 160 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~ 160 (175)
+|||++++++++.+..|+..+..... .+.|+++++||+|+.++. ...+..+... ..+++++++||++|.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL--SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC--CHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence 99999999999999999888876533 679999999999986543 3334333322 346789999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030524 161 LCCHTLNSLITVC 173 (175)
Q Consensus 161 ~~f~~l~~~~~~~ 173 (175)
++|+++.+.+..+
T Consensus 169 ~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 169 PGIDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887654
No 88
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=100.00 E-value=2.1e-33 Score=192.16 Aligned_cols=160 Identities=23% Similarity=0.338 Sum_probs=130.1
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
...++|+++|++|+|||||+++|+++.+...+.++.+.++.. +... .+.+.+||+||++++...+..++.++|++|
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIV 95 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEeC--CEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence 457999999999999999999999988777777777766543 2233 467999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HhcCCeEEEeccCCCCCHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIK 160 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~ 160 (175)
+|||++++++++.+..|+..+..... .++|+++|+||+|+.+.. ...+..... ...+++++++||++|.|++
T Consensus 96 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~ 173 (188)
T 1zd9_A 96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNID 173 (188)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCCCHH
Confidence 99999999999999999988876532 689999999999986532 222322221 1235689999999999999
Q ss_pred HHHHHHHHHHhh
Q 030524 161 LCCHTLNSLITV 172 (175)
Q Consensus 161 ~~f~~l~~~~~~ 172 (175)
++|++|.+.+..
T Consensus 174 ~l~~~l~~~~~~ 185 (188)
T 1zd9_A 174 ITLQWLIQHSKS 185 (188)
T ss_dssp HHHHHHHHTCC-
T ss_pred HHHHHHHHHHHh
Confidence 999999987654
No 89
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=100.00 E-value=2.9e-31 Score=181.98 Aligned_cols=163 Identities=35% Similarity=0.680 Sum_probs=148.7
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (175)
..++|+++|++|||||||++++.+......+.++.+.++....+.+++..+.+.+||++|.+++...+..++.+++++++
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 107 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALL 107 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEE
Confidence 45899999999999999999999998888888898888888888899988889999999999999999999999999999
Q ss_pred EEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHH
Q 030524 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLN 167 (175)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~ 167 (175)
|||+++..+++.+..|+..+......+.|+++++||+|+.+.+......++.++.+.++.++++|++++.+++++|++|.
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~ 187 (191)
T 1oix_A 108 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTIL 187 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999998898887766556789999999999987777788889999999999999999999999999999998
Q ss_pred HHH
Q 030524 168 SLI 170 (175)
Q Consensus 168 ~~~ 170 (175)
+.+
T Consensus 188 ~~i 190 (191)
T 1oix_A 188 TEI 190 (191)
T ss_dssp HHH
T ss_pred HHh
Confidence 765
No 90
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=100.00 E-value=2.9e-33 Score=187.11 Aligned_cols=157 Identities=21% Similarity=0.330 Sum_probs=122.6
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (175)
+||+++|++|+|||||+++++++.+.. +.++.+.. ...+.. ..+.+.+||+||++++...+..++.++|++++||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC--EEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee--EEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999877553 45555532 233333 3467999999999999999999999999999999
Q ss_pred ECCChhhHHhHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHH-----HHhcCCeEEEeccCCCCCHHHHH
Q 030524 90 DVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAK-----SRELNVMFIETSAKAGFNIKLCC 163 (175)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nk~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~v~~~f 163 (175)
|++++++++.+..|+..+.... ..+.|+++++||+|+.+.. ...+.... +...+++++++||++|.|++++|
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence 9999999999999988887643 2689999999999986532 22232222 12235689999999999999999
Q ss_pred HHHHHHHhhh
Q 030524 164 HTLNSLITVC 173 (175)
Q Consensus 164 ~~l~~~~~~~ 173 (175)
+++.+.+..+
T Consensus 154 ~~l~~~i~~~ 163 (164)
T 1r8s_A 154 DWLSNQLRNQ 163 (164)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHHhhc
Confidence 9999887543
No 91
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=100.00 E-value=7.4e-33 Score=190.08 Aligned_cols=160 Identities=20% Similarity=0.328 Sum_probs=121.7
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (175)
..+.++|+++|++|+|||||+++++.+.+. .+.++.+. ....+..++ +.+.+||+||++++...+..++.++|++
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 100 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGF--NVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGL 100 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTE--EEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCce--eEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 456799999999999999999999987654 34555542 233344444 6799999999999999999999999999
Q ss_pred EEEEECCChhhHHhHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHH-----HHhcCCeEEEeccCCCCCH
Q 030524 86 VVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAK-----SRELNVMFIETSAKAGFNI 159 (175)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nk~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~v 159 (175)
|+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.. ...+.... +...+++++++||++|.|+
T Consensus 101 ilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi 178 (192)
T 2b6h_A 101 IFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM--PVSELTDKLGLQHLRSRTWYVQATCATQGTGL 178 (192)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEECcCCCcCCH
Confidence 99999999999999999998887643 2579999999999986532 22232222 1223467999999999999
Q ss_pred HHHHHHHHHHHhh
Q 030524 160 KLCCHTLNSLITV 172 (175)
Q Consensus 160 ~~~f~~l~~~~~~ 172 (175)
+++|++|.+.+..
T Consensus 179 ~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 179 YDGLDWLSHELSK 191 (192)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987753
No 92
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=100.00 E-value=3.3e-32 Score=185.08 Aligned_cols=158 Identities=20% Similarity=0.298 Sum_probs=125.9
Q ss_pred CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 030524 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (175)
Q Consensus 5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (175)
...+.++|+++|++|+|||||+++|+++.+ ..+.++.+... ..+..++ ..+.+||+||++++...+..++.++|+
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEF 91 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 345679999999999999999999999876 45555555443 3334454 679999999999999999999999999
Q ss_pred EEEEEECCChhhHHhHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HhcCCeEEEeccCCCCC
Q 030524 85 AVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFN 158 (175)
Q Consensus 85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~ 158 (175)
+|+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+. ....+..+.. ...+++++++||++|.|
T Consensus 92 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~g 169 (181)
T 2h17_A 92 VIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEG 169 (181)
T ss_dssp EEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCCcC
Confidence 999999999999999999988887653 368999999999998653 3344444433 23456899999999999
Q ss_pred HHHHHHHHHHH
Q 030524 159 IKLCCHTLNSL 169 (175)
Q Consensus 159 v~~~f~~l~~~ 169 (175)
++++|++|.+.
T Consensus 170 i~~l~~~l~~~ 180 (181)
T 2h17_A 170 LCQGLEWMMSR 180 (181)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhh
Confidence 99999998764
No 93
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=8.1e-32 Score=183.96 Aligned_cols=159 Identities=20% Similarity=0.317 Sum_probs=125.9
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
.+.++|+++|++|+|||||+++++++.+. .+.++.+... ..+..++ ..+.+||+||++++...+..++.++|++|
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSC--EEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999987765 5555555333 3334454 67999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HhcCCeEEEeccCCCCCHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIK 160 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~ 160 (175)
+|||++++++++.+..|+..+..... .+.|+++|+||+|+.+. ....+..+.. ...+++++++||++|.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 166 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence 99999999999999999998877532 67999999999998642 3344444433 2346789999999999999
Q ss_pred HHHHHHHHHHhh
Q 030524 161 LCCHTLNSLITV 172 (175)
Q Consensus 161 ~~f~~l~~~~~~ 172 (175)
++|++|.+.+..
T Consensus 167 ~l~~~l~~~~~~ 178 (187)
T 1zj6_A 167 QGLEWMMSRLKI 178 (187)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHHHH
Confidence 999999987754
No 94
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=100.00 E-value=5.8e-31 Score=194.22 Aligned_cols=163 Identities=29% Similarity=0.475 Sum_probs=143.7
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (175)
..++|+++|++|+|||||+++++++.+...+.++.+ +.....+..++..+.+.+||+||++.+...+..++.++|++++
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSE-EEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccc-ceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 458999999999999999999999888777777765 4445667788888999999999999999999999999999999
Q ss_pred EEECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHhcCC-eEEEecc
Q 030524 88 VYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETSA 153 (175)
Q Consensus 88 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~ 153 (175)
|||++++.+++.+. .|+..+.... .++|+++|+||+|+.+. +.+...++..++...++ +++++||
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 311 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence 99999999999987 6877777665 48999999999998643 56788899999999997 9999999
Q ss_pred CCCCCHHHHHHHHHHHHhh
Q 030524 154 KAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 154 ~~~~~v~~~f~~l~~~~~~ 172 (175)
++|.|++++|++|.+.+..
T Consensus 312 ~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 312 LTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp TTCTTHHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHHHHhc
Confidence 9999999999999988754
No 95
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.98 E-value=1.5e-32 Score=187.82 Aligned_cols=160 Identities=21% Similarity=0.307 Sum_probs=127.5
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
.+.++|+++|++|+|||||+++++.+.+. .+.++.+.. ...+..++ ..+.+|||||++++...+..+++++|++|
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVV-TTVPTVGVN--LETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCE-EECSSTTCC--EEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCC-CcCCCCceE--EEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 46799999999999999999999877654 345555433 33344443 67999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHH-----HHhcCCeEEEeccCCCCCHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAK-----SRELNVMFIETSAKAGFNIK 160 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~v~ 160 (175)
+|+|++++++++.+..|+..+..... .+.|+++|+||+|+.+.. ...+.... +...+++++++||++|.|++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA--SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV 172 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC--CHHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence 99999999999999998888876543 689999999999986542 22233222 23345689999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030524 161 LCCHTLNSLITVC 173 (175)
Q Consensus 161 ~~f~~l~~~~~~~ 173 (175)
++|+++.+.+...
T Consensus 173 ~l~~~l~~~i~~~ 185 (189)
T 2x77_A 173 EGMDWLVERLREQ 185 (189)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887653
No 96
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.98 E-value=1.8e-32 Score=186.96 Aligned_cols=163 Identities=21% Similarity=0.348 Sum_probs=124.1
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcC--CCCCcccccceeeEEEEEEEE---CCeEEEEEEEeCCCcccccccccccccCCc
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYD--KFDNTYQATIGIDFLSKTMYL---EDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 83 (175)
.+||+++|++|+|||||++++++. .....+.++.+.++....... ++..+.+.+||++|++++..++..++.++|
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999999985 444556777777776665543 335678999999999999999999999999
Q ss_pred EEEEEEECCCh-hhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCC---HHHHHHHHHhcCCe----EEEeccCC
Q 030524 84 VAVVVYDVASR-QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS---IEEGEAKSRELNVM----FIETSAKA 155 (175)
Q Consensus 84 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~---~~~~~~~~~~~~~~----~~~~s~~~ 155 (175)
++++|||++++ .+++.+..|+..+.... ++.|+++|+||+|+.+.+... ......++..++++ ++++||++
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE 160 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence 99999999997 58999999999887654 479999999999986543322 23345666677876 99999999
Q ss_pred CC-CHHHHHHHHHHHHhh
Q 030524 156 GF-NIKLCCHTLNSLITV 172 (175)
Q Consensus 156 ~~-~v~~~f~~l~~~~~~ 172 (175)
|. ++.+++..+.+.+..
T Consensus 161 ~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 161 ESDALAKLRKTIINESLN 178 (184)
T ss_dssp CCHHHHHHHHHHHHHHHC
T ss_pred CchhHHHHHHHHHHHHhc
Confidence 97 999999998877653
No 97
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.98 E-value=2e-31 Score=181.32 Aligned_cols=159 Identities=22% Similarity=0.346 Sum_probs=125.6
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
...++|+++|++|+|||||++++.+... ..+.++.+.. ...+..++ +.+.+||+||++.+...+..++.++|+++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFN--IKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEE--EEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeE--EEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 4679999999999999999999998753 3445555533 33344453 67999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HhcCCeEEEeccCCCCCHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIK 160 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~ 160 (175)
+|||++++++++.+..|+..+..... .+.|+++++||+|+.+... ..+..+.. ...+++++++||++|+|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ 166 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC--HHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence 99999999999999999888765432 6799999999999865432 33333221 2235689999999999999
Q ss_pred HHHHHHHHHHhh
Q 030524 161 LCCHTLNSLITV 172 (175)
Q Consensus 161 ~~f~~l~~~~~~ 172 (175)
++|+++.+.+..
T Consensus 167 ~l~~~l~~~~~~ 178 (181)
T 1fzq_A 167 DGMNWVCKNVNA 178 (181)
T ss_dssp HHHHHHHHTC--
T ss_pred HHHHHHHHHHHh
Confidence 999999987754
No 98
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.96 E-value=2.3e-34 Score=199.24 Aligned_cols=162 Identities=30% Similarity=0.493 Sum_probs=137.5
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
.+.++|+++|++|+|||||+++++++.+...+.++.. +.....+..++..+.+.+||+||++++...+..++.++|++|
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 5679999999999999999999998877766666664 333455566777788999999999999999999999999999
Q ss_pred EEEECCChhhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC------------CCCHHHHHHHHHhcCC-eEEEec
Q 030524 87 VVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKR------------QVSIEEGEAKSRELNV-MFIETS 152 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~s 152 (175)
+|||++++.+++.+. .|+..+.... .++|+++|+||+|+.+.. .....+...++...++ +++++|
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS 185 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
Confidence 999999999999986 7877776554 379999999999986543 4556677788888887 999999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 030524 153 AKAGFNIKLCCHTLNSLI 170 (175)
Q Consensus 153 ~~~~~~v~~~f~~l~~~~ 170 (175)
|++|.|++++|+++.+.+
T Consensus 186 A~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
Confidence 999999999999998765
No 99
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.97 E-value=8.9e-32 Score=185.18 Aligned_cols=161 Identities=16% Similarity=0.184 Sum_probs=123.1
Q ss_pred CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEE--EEEEEE-CCeEEEEEEEeCCCcccccccc---ccc
Q 030524 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFL--SKTMYL-EDRTVRLQLWDTAGQERFRSLI---PSY 78 (175)
Q Consensus 5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~i~D~~G~~~~~~~~---~~~ 78 (175)
+....+||+++|++|||||||++++.++... . ++.+.+.. .....+ ++..+.+.+||++|+++|.... ..+
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 92 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSP-N--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI 92 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCCCG-G--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcCCC-c--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence 4456899999999999999999988775322 2 23332222 222223 2556789999999999987776 899
Q ss_pred ccCCcEEEEEEECCCh--hhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-------CCCCCHHHHHHHHH----hcC
Q 030524 79 IRDSSVAVVVYDVASR--QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE-------KRQVSIEEGEAKSR----ELN 145 (175)
Q Consensus 79 ~~~~d~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~-------~~~~~~~~~~~~~~----~~~ 145 (175)
++++|++|+|||++++ ++++.+..|+..+... ..+.|+++|+||+|+.+ .+.+...+...++. .++
T Consensus 93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 171 (196)
T 3llu_A 93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLH 171 (196)
T ss_dssp HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSC
T ss_pred cccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCC
Confidence 9999999999999997 7777788888877543 36899999999999754 23444556677777 678
Q ss_pred CeEEEeccCCCCCHHHHHHHHHHHH
Q 030524 146 VMFIETSAKAGFNIKLCCHTLNSLI 170 (175)
Q Consensus 146 ~~~~~~s~~~~~~v~~~f~~l~~~~ 170 (175)
++++++||++ .|++++|..+.+.+
T Consensus 172 ~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 172 LSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred cceEEEEech-hhHHHHHHHHHHHh
Confidence 8999999999 99999999998875
No 100
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=5.3e-31 Score=179.06 Aligned_cols=160 Identities=23% Similarity=0.337 Sum_probs=126.0
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
...++|+++|++|+|||||+++++++.. ..+.++.+... ..+..++ ..+.+||+||++++...+..++.++|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNV--ETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCE--EEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 5679999999999999999999998765 45555655333 3344444 67999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----hcCCeEEEeccCCCCCHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNIK 160 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~ 160 (175)
+|+|++++++++.+..|+..+.... ..+.|+++++||+|+.+. ....+...... ..+++++++||++|+|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT 168 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 9999999999999999998887654 368999999999998653 33444444332 234589999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030524 161 LCCHTLNSLITVC 173 (175)
Q Consensus 161 ~~f~~l~~~~~~~ 173 (175)
++|++|.+.+..+
T Consensus 169 ~l~~~l~~~~~~~ 181 (183)
T 1moz_A 169 EGLDWLIDVIKEE 181 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988654
No 101
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.97 E-value=1.3e-31 Score=191.32 Aligned_cols=166 Identities=20% Similarity=0.275 Sum_probs=126.0
Q ss_pred CCCCCceeEEEECCC---------CCCHHHHHHHHhc---CCCCCcccccc-eeeEEEEEE--------------EECCe
Q 030524 4 VSALAKYKLVFLGDQ---------SVGKTSIITRFMY---DKFDNTYQATI-GIDFLSKTM--------------YLEDR 56 (175)
Q Consensus 4 ~~~~~~~~i~l~G~~---------~~GKSsli~~l~~---~~~~~~~~~~~-~~~~~~~~~--------------~~~~~ 56 (175)
......+||+++|.+ |||||||+++|++ ..+...+.++. +.++....+ .+++.
T Consensus 14 ~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 93 (255)
T 3c5h_A 14 LYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCV 93 (255)
T ss_dssp SSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-------
T ss_pred CCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCc
Confidence 345567999999999 9999999999998 44555555553 333221111 14567
Q ss_pred EEEEEEEe-----------------------CCCccccccccccccc---------------------CCcEEEEEEECC
Q 030524 57 TVRLQLWD-----------------------TAGQERFRSLIPSYIR---------------------DSSVAVVVYDVA 92 (175)
Q Consensus 57 ~~~~~i~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~~i~v~d~~ 92 (175)
.+.+.+|| ++|+++|..++..++. ++|++|+|||++
T Consensus 94 ~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t 173 (255)
T 3c5h_A 94 ECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS 173 (255)
T ss_dssp --CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred EEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence 78899999 7778888888888887 799999999999
Q ss_pred Ch--hhHHhHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHh-cCCeEEEeccCCCCCHHHHHHHHHH
Q 030524 93 SR--QSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNIKLCCHTLNS 168 (175)
Q Consensus 93 ~~--~~~~~~~~~~~~~~~~-~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~v~~~f~~l~~ 168 (175)
++ ++|+.+..|+..+... ...++|+++|+||+|+.+.+.+ .+.+.++.. .+++++++||++|.|++++|.+|.+
T Consensus 174 ~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~ 251 (255)
T 3c5h_A 174 RGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQ 251 (255)
T ss_dssp C----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 98 9999999999998776 3368999999999998654443 566777766 4889999999999999999999988
Q ss_pred HHh
Q 030524 169 LIT 171 (175)
Q Consensus 169 ~~~ 171 (175)
.+.
T Consensus 252 ~l~ 254 (255)
T 3c5h_A 252 LID 254 (255)
T ss_dssp HHH
T ss_pred Hhc
Confidence 763
No 102
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.97 E-value=9.2e-31 Score=182.28 Aligned_cols=161 Identities=21% Similarity=0.292 Sum_probs=115.2
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCe-EEEEEEEeCCCcccccc-cccccccCCc
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR-TVRLQLWDTAGQERFRS-LIPSYIRDSS 83 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~-~~~~~~~~~d 83 (175)
....++|+++|++|+|||||+++|+++.+...+.++ +.+... +..++. .+.+.+|||||++++.. ++..++.++|
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 80 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSAR 80 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCC
Confidence 346799999999999999999999998877666543 334433 445543 57899999999999988 7888999999
Q ss_pred EEEEEEECCChh-hHHhHHHHHHHHHHh---cCCCCcEEEEEeCCCCCCCCCCCH--HHHH-------------------
Q 030524 84 VAVVVYDVASRQ-SFLNTSKWIDEVRTE---RGSDVIIVLVGNKTDLVEKRQVSI--EEGE------------------- 138 (175)
Q Consensus 84 ~~i~v~d~~~~~-~~~~~~~~~~~~~~~---~~~~~~~iiv~nk~D~~~~~~~~~--~~~~------------------- 138 (175)
++|+|||+++.. ++.....++..+... ...++|+++|+||+|+.+...... ....
T Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~ 160 (214)
T 2fh5_B 81 AVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDS 160 (214)
T ss_dssp EEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC--------
T ss_pred EEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccC
Confidence 999999999864 466665555544333 235799999999999865432110 0111
Q ss_pred -------------HHHH-hc--CCeEEEeccCCC------CCHHHHHHHHHHH
Q 030524 139 -------------AKSR-EL--NVMFIETSAKAG------FNIKLCCHTLNSL 169 (175)
Q Consensus 139 -------------~~~~-~~--~~~~~~~s~~~~------~~v~~~f~~l~~~ 169 (175)
.++. .+ +++|++|||++| .|++++|++|.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 161 SSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred CccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 1111 11 668999999999 9999999999875
No 103
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.97 E-value=6.1e-30 Score=171.49 Aligned_cols=154 Identities=15% Similarity=0.223 Sum_probs=116.3
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc------ccccccc-
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS------LIPSYIR- 80 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~~- 80 (175)
..++|+++|++|+|||||++++.+........++.+.+.....+..++ ..+.+|||||+.++.. +...++.
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 79 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 79 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence 358999999999999999999998765544455555555555555555 4799999999887652 3355554
Q ss_pred -CCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCH
Q 030524 81 -DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159 (175)
Q Consensus 81 -~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 159 (175)
++|++++|+|+++.+. ...|+..+.. .+.|+++++||+|+.+.+.... +.+.++..++++++++||++|.|+
T Consensus 80 ~~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v 152 (165)
T 2wji_A 80 EKPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGI 152 (165)
T ss_dssp HCCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSH
T ss_pred CCCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCH
Confidence 8999999999988653 3446666554 3699999999999865444332 467788888999999999999999
Q ss_pred HHHHHHHHHHH
Q 030524 160 KLCCHTLNSLI 170 (175)
Q Consensus 160 ~~~f~~l~~~~ 170 (175)
+++|+++.+.+
T Consensus 153 ~~l~~~l~~~~ 163 (165)
T 2wji_A 153 EELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998765
No 104
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.97 E-value=3.1e-29 Score=169.57 Aligned_cols=155 Identities=16% Similarity=0.207 Sum_probs=119.3
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (175)
..+.++|+++|++|+|||||+++|++..+...+.++.+.+.....+..++. .+.+||+||++++...+..++..+|++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 82 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIV 82 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence 456799999999999999999999998877666666665655556666664 578999999999999999999999999
Q ss_pred EEEEECCCh---hhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHh-------cC--CeEEEecc
Q 030524 86 VVVYDVASR---QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-------LN--VMFIETSA 153 (175)
Q Consensus 86 i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~-------~~--~~~~~~s~ 153 (175)
|+|+|++++ .+++.+ ..+ ...++|+++|+||+|+.+. ...+....... ++ ++++++||
T Consensus 83 i~v~d~~~~~~~~~~~~l----~~~---~~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 152 (178)
T 2lkc_A 83 ILVVAADDGVMPQTVEAI----NHA---KAANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSA 152 (178)
T ss_dssp EEEEETTCCCCHHHHHHH----HHH---GGGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCS
T ss_pred EEEEECCCCCcHHHHHHH----HHH---HhCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEec
Confidence 999999884 333322 222 2257999999999998653 22333333222 22 58999999
Q ss_pred CCCCCHHHHHHHHHHHHhh
Q 030524 154 KAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 154 ~~~~~v~~~f~~l~~~~~~ 172 (175)
++|.|++++|++|.+.+..
T Consensus 153 ~~~~gv~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 153 KTKEGLDHLLEMILLVSEM 171 (178)
T ss_dssp SSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhhhh
Confidence 9999999999999887654
No 105
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.97 E-value=1.7e-30 Score=191.69 Aligned_cols=159 Identities=21% Similarity=0.324 Sum_probs=121.0
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
.+.++|+++|++|+|||||+++|.++.+... .++.+..+. .+... .+.+.+|||||++.+..++..++.++|++|
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~--~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi 237 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 237 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEE--EEEET--TEEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEE--EEecC--cEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 3568999999999999999999998775433 345544433 23333 367999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----hcCCeEEEeccCCCCCHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNIK 160 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~ 160 (175)
+|||++++.+|+.+..|+..+..... .++|+++|+||+|+.+.. ...+...... ..+++++++||++|.|++
T Consensus 238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~ 315 (329)
T 3o47_A 238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLY 315 (329)
T ss_dssp EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc--CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHH
Confidence 99999999999999888887765543 689999999999986543 2233322222 234579999999999999
Q ss_pred HHHHHHHHHHhh
Q 030524 161 LCCHTLNSLITV 172 (175)
Q Consensus 161 ~~f~~l~~~~~~ 172 (175)
++|++|.+.+..
T Consensus 316 el~~~l~~~l~~ 327 (329)
T 3o47_A 316 EGLDWLSNQLRN 327 (329)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 106
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.97 E-value=5.9e-29 Score=174.86 Aligned_cols=164 Identities=17% Similarity=0.146 Sum_probs=116.4
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcc------cc---cccccc
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE------RF---RSLIPS 77 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~------~~---~~~~~~ 77 (175)
...++|+++|++|+|||||+++|++..+.....+..+.+........++ ..+.+|||||+. .. ...+..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 4679999999999999999999998765422222223333333333344 579999999983 21 112334
Q ss_pred cccCCcEEEEEEECCChhhHHh--HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHH---HHHHHHHhcC--CeEEE
Q 030524 78 YIRDSSVAVVVYDVASRQSFLN--TSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIE---EGEAKSRELN--VMFIE 150 (175)
Q Consensus 78 ~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~---~~~~~~~~~~--~~~~~ 150 (175)
++..+|++|+|||++++.+++. ...|+..+... ..++|+++|+||+|+.+.++.... ....++...+ +++++
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSS 183 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHh-hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEE
Confidence 5778999999999999887652 23455555432 247999999999999776666554 4566777777 89999
Q ss_pred eccCCCCCHHHHHHHHHHHHhhh
Q 030524 151 TSAKAGFNIKLCCHTLNSLITVC 173 (175)
Q Consensus 151 ~s~~~~~~v~~~f~~l~~~~~~~ 173 (175)
+||++|+|++++|++|.+.+...
T Consensus 184 ~SA~~g~gi~~l~~~l~~~i~~~ 206 (228)
T 2qu8_A 184 FSTLTGVGVEQAKITACELLKND 206 (228)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999887643
No 107
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.97 E-value=1.1e-29 Score=185.78 Aligned_cols=161 Identities=21% Similarity=0.306 Sum_probs=128.5
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCC---CcccccceeeEEEEEEEECCeEEEEEEEeCCCcccc-----cccccccc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD---NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-----RSLIPSYI 79 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~ 79 (175)
..+||+++|++|+|||||+++++++... ..+.+|.+..+.. ..+++ .+.+.+||+||++.+ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH--LRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE--EEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 4689999999999999999999987432 2345555554443 33444 578999999999988 77888999
Q ss_pred cCCcEEEEEEECCChhhHHhHHHHHHHHHHhc--CCCCcEEEEEeCCCCCC--CCC----CCHHHHHHHHHhcC---CeE
Q 030524 80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTER--GSDVIIVLVGNKTDLVE--KRQ----VSIEEGEAKSRELN---VMF 148 (175)
Q Consensus 80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~iiv~nk~D~~~--~~~----~~~~~~~~~~~~~~---~~~ 148 (175)
+++|++|+|||++++++++.+..|...+.... .+++|+++++||+|+.+ .+. ....++.+++..+| +++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 99999999999999999999877755444332 36899999999999875 343 55577888999987 799
Q ss_pred EEeccCCCCCHHHHHHHHHHHHhh
Q 030524 149 IETSAKAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 149 ~~~s~~~~~~v~~~f~~l~~~~~~ 172 (175)
+++||++ .++.++|..+.+.+.+
T Consensus 159 ~~tSa~~-~~i~e~~~~iv~~li~ 181 (307)
T 3r7w_A 159 FPTSIWD-ESLYKAWSQIVCSLIP 181 (307)
T ss_dssp EECCTTS-SHHHHHHHHHHHTTCS
T ss_pred EEeeecC-ChHHHHHHHHHHHHcC
Confidence 9999999 8999999998876643
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.96 E-value=1.9e-29 Score=195.56 Aligned_cols=160 Identities=23% Similarity=0.332 Sum_probs=126.8
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
...++|+++|.+|+|||||+++|+++... ...+|.+.++.. +.. ..+.+.+|||+|++.+...+..++.++|++|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~~~~--~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET--VTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEE--EES--SSCEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccceeEEE--EEe--CCEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 35699999999999999999999998744 345566544433 333 3467999999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----hcCCeEEEeccCCCCCHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNIK 160 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~ 160 (175)
+|||++++++|+.+..|+..+..... .++|+++|+||+|+.+.. ...+...... ..+++++++||++|+|++
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 472 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 472 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCC--CHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCC--CHHHHHHHhchhhhhcCCeEEEEEECCCCCCHH
Confidence 99999999999999999988876543 689999999999986532 3333333221 234579999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030524 161 LCCHTLNSLITVC 173 (175)
Q Consensus 161 ~~f~~l~~~~~~~ 173 (175)
++|++|.+.+...
T Consensus 473 ~l~~~l~~~~~~~ 485 (497)
T 3lvq_E 473 EGLTWLTSNYKSK 485 (497)
T ss_dssp HHHHHHHHHCC--
T ss_pred HHHHHHHHHHHhc
Confidence 9999999876543
No 109
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.96 E-value=2.2e-29 Score=172.79 Aligned_cols=162 Identities=15% Similarity=0.184 Sum_probs=111.4
Q ss_pred CCCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCC----------ccccc
Q 030524 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERFR 72 (175)
Q Consensus 3 ~~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~ 72 (175)
+++....++|+++|++|+|||||+++|++..+.....++.+.+........++ .+.+||||| ++.+.
T Consensus 17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (195)
T 1svi_A 17 QYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWG 93 (195)
T ss_dssp GSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHH
T ss_pred hCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHH
Confidence 34556679999999999999999999998875544444444444333334444 589999999 67777
Q ss_pred ccccccccCC---cEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCH--HHHHH-HHHhcCC
Q 030524 73 SLIPSYIRDS---SVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI--EEGEA-KSRELNV 146 (175)
Q Consensus 73 ~~~~~~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~--~~~~~-~~~~~~~ 146 (175)
..+..++.++ |++++|+|++++.++.... ++..+. . .+.|+++|+||+|+.+.++... .+..+ ++...++
T Consensus 94 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~-~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 169 (195)
T 1svi_A 94 RMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLK-Y--YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPED 169 (195)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHH-H--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHH-H--cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCC
Confidence 7788887776 9999999999887766532 112222 1 5789999999999876544322 22332 3334467
Q ss_pred eEEEeccCCCCCHHHHHHHHHHHHh
Q 030524 147 MFIETSAKAGFNIKLCCHTLNSLIT 171 (175)
Q Consensus 147 ~~~~~s~~~~~~v~~~f~~l~~~~~ 171 (175)
+++++||++|.|++++|++|.+.+.
T Consensus 170 ~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 170 ELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred ceEEEEccCCCCHHHHHHHHHHHhc
Confidence 9999999999999999999988753
No 110
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.96 E-value=4.2e-30 Score=187.16 Aligned_cols=156 Identities=16% Similarity=0.151 Sum_probs=119.9
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCCCC---cccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc---cccccccCCcE
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKFDN---TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---LIPSYIRDSSV 84 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~d~ 84 (175)
||+++|+.|||||||++++.++..+. ...+|.++++.. ++ ..+++.+|||+|+++|.. .+..|++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999887664332 245667666543 22 347899999999999975 46889999999
Q ss_pred EEEEEECCCh--hhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-------CCCCHHHHHHHHHh----cCCeEEEe
Q 030524 85 AVVVYDVASR--QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK-------RQVSIEEGEAKSRE----LNVMFIET 151 (175)
Q Consensus 85 ~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~-------~~~~~~~~~~~~~~----~~~~~~~~ 151 (175)
+|+|||++++ +.++.+..|+..+... .+++|+++++||+|+.++ +++...+++++++. ++++|+++
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT 154 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT 154 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence 9999999998 3333333444444433 368999999999999654 34556667777775 68899999
Q ss_pred ccCCCCCHHHHHHHHHHHHhhh
Q 030524 152 SAKAGFNIKLCCHTLNSLITVC 173 (175)
Q Consensus 152 s~~~~~~v~~~f~~l~~~~~~~ 173 (175)
||++ .++.++|..+++.+.++
T Consensus 155 SAkd-~nV~eAFs~iv~~li~~ 175 (331)
T 3r7w_B 155 SIFD-HSIYEAFSRIVQKLIPE 175 (331)
T ss_dssp CSSS-SHHHHHHHHHHTTSSTT
T ss_pred ccCC-CcHHHHHHHHHHHHHhh
Confidence 9998 58999999999887765
No 111
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=7.5e-29 Score=169.17 Aligned_cols=157 Identities=14% Similarity=0.199 Sum_probs=123.4
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccccc------cccccccc
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR------SLIPSYIR 80 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~ 80 (175)
.+.++|+++|++|+|||||+++|++........++.+.+.....+..++ ..+.+|||||++.+. ..+..++.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYII 82 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHh
Confidence 3679999999999999999999998765555555656666666666665 578999999988775 34555554
Q ss_pred --CCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCC
Q 030524 81 --DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158 (175)
Q Consensus 81 --~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 158 (175)
.+|++++|+|.++ ++....|+..+.. .+.|+++++||+|+.+.+... ...+.++..++++++++|+++|.|
T Consensus 83 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~ 155 (188)
T 2wjg_A 83 NEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMG 155 (188)
T ss_dssp HHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBS
T ss_pred ccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCC
Confidence 5999999999865 4556667666654 478999999999986544433 356778888899999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 030524 159 IKLCCHTLNSLITV 172 (175)
Q Consensus 159 v~~~f~~l~~~~~~ 172 (175)
++++|+++.+.+..
T Consensus 156 v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 156 IEELKKAISIAVKD 169 (188)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887754
No 112
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.96 E-value=2.2e-28 Score=162.73 Aligned_cols=150 Identities=17% Similarity=0.155 Sum_probs=107.3
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCccc-------ccccccccccC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRSLIPSYIRD 81 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~ 81 (175)
.||+++|++|+|||||++++.+.... ....+..+.+........++. .+.+||+||+.. +...+..++.+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 58999999999999999999987643 233334444555555666664 689999999876 34456677899
Q ss_pred CcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC-eEEEeccCCCCCHH
Q 030524 82 SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIK 160 (175)
Q Consensus 82 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~ 160 (175)
+|++++|+|++++.+.. ..++...... .+.|+++++||+|+.+.. .+..+++ .+++ +++++||++|.|++
T Consensus 80 ~~~~i~v~d~~~~~~~~--~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~ 150 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQA--DYEVAEYLRR--KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLE 150 (161)
T ss_dssp CSEEEEEEESSSCCCHH--HHHHHHHHHH--HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred CCEEEEEEECCCcccHh--HHHHHHHHHh--cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChH
Confidence 99999999999864332 2333333333 468999999999986542 2334445 5677 89999999999999
Q ss_pred HHHHHHHHHH
Q 030524 161 LCCHTLNSLI 170 (175)
Q Consensus 161 ~~f~~l~~~~ 170 (175)
++|+++.+.+
T Consensus 151 ~l~~~l~~~l 160 (161)
T 2dyk_A 151 ELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999998764
No 113
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.96 E-value=1e-28 Score=166.62 Aligned_cols=154 Identities=19% Similarity=0.191 Sum_probs=115.0
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSY 78 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~ 78 (175)
...+|+++|++|+|||||+++|.+.... ....+..+.++....+..++. .+.+|||||+.++... ...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 4589999999999999999999987532 222334445666666677764 4899999998653221 1135
Q ss_pred ccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCC
Q 030524 79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158 (175)
Q Consensus 79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 158 (175)
+.++|++++|||++++.+++ ...|+..+......++|+++|+||+|+.++.. .++...+++++++||++|.|
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g 152 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG 152 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence 78999999999999988875 45677777766556899999999999853211 12333567999999999999
Q ss_pred HHHHHHHHHHHHh
Q 030524 159 IKLCCHTLNSLIT 171 (175)
Q Consensus 159 v~~~f~~l~~~~~ 171 (175)
++++|++|.+.+.
T Consensus 153 v~~l~~~l~~~~~ 165 (172)
T 2gj8_A 153 VDVLRNHLKQSMG 165 (172)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987653
No 114
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.96 E-value=6.8e-29 Score=193.83 Aligned_cols=164 Identities=21% Similarity=0.340 Sum_probs=126.2
Q ss_pred CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEE------EEE--CCeEEEEEEEeCCCccccccccc
Q 030524 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKT------MYL--EDRTVRLQLWDTAGQERFRSLIP 76 (175)
Q Consensus 5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~i~D~~G~~~~~~~~~ 76 (175)
.....+||+++|.+|+|||||++++.+..+...+.++.+.++.... +.+ ++..+.+.+||+||++.+...+.
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 4567899999999999999999999998887778888887776553 112 23357899999999999999999
Q ss_pred ccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCC
Q 030524 77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG 156 (175)
Q Consensus 77 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 156 (175)
.++.++|++|+|+|+++. +.+..|+..+.... .+.|+++|+||+|+.+.+.....+.+.++...+++++++||++|
T Consensus 117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g 192 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNG 192 (535)
T ss_dssp HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC---
T ss_pred HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcc
Confidence 999999999999998765 45677888777665 47999999999999888888888899999999999999999999
Q ss_pred CCHHHHHHHHHHHHhh
Q 030524 157 FNIKLCCHTLNSLITV 172 (175)
Q Consensus 157 ~~v~~~f~~l~~~~~~ 172 (175)
.|++++|..+.+.+..
T Consensus 193 ~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 193 DGVESIAKSLKSAVLH 208 (535)
T ss_dssp --CTTHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHhc
Confidence 9999999999987754
No 115
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.95 E-value=1.2e-28 Score=168.20 Aligned_cols=155 Identities=23% Similarity=0.286 Sum_probs=118.2
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCC-----------ccccccccccc
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG-----------QERFRSLIPSY 78 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~ 78 (175)
++|+++|++|+|||||++++++..+...+.++.+.... ..... .+.+||+|| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~--~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKII--EIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCE--EEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeE--EEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 68999999999999999999998876666555443332 22233 589999999 66777777778
Q ss_pred ccC-CcEEEEEEECCChhhHHhH-HHHHHH--------HHH-hcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCe
Q 030524 79 IRD-SSVAVVVYDVASRQSFLNT-SKWIDE--------VRT-ERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM 147 (175)
Q Consensus 79 ~~~-~d~~i~v~d~~~~~~~~~~-~~~~~~--------~~~-~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~ 147 (175)
+.+ ++++++++++.+..+++.+ ..|... +.. ....++|+++++||+|+.+.. ....+.++..++++
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~ 152 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP 152 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence 777 7777777777777788776 555542 222 222579999999999986544 56677888888874
Q ss_pred -------EEEeccCCCCCHHHHHHHHHHHHhhh
Q 030524 148 -------FIETSAKAGFNIKLCCHTLNSLITVC 173 (175)
Q Consensus 148 -------~~~~s~~~~~~v~~~f~~l~~~~~~~ 173 (175)
++++||++|.|++++|+++.+.+...
T Consensus 153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred hhccCCcEEEEecCCCCCHHHHHHHHHHhcchh
Confidence 79999999999999999999887653
No 116
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.95 E-value=8e-28 Score=171.89 Aligned_cols=156 Identities=17% Similarity=0.189 Sum_probs=120.3
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccccccc------ccccc-
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL------IPSYI- 79 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~- 79 (175)
.+.++|+++|++|+|||||+++|++........+..+++.....+...+ ..+.+||+||...+... ...++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 3568999999999999999999998776544455555555555554444 57999999998877653 24555
Q ss_pred -cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCC
Q 030524 80 -RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158 (175)
Q Consensus 80 -~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 158 (175)
.++|++++|+|+++.++... |...+.. .++|+++++||+|+.+.+.... +...++..++++++++||++|.|
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~~---~~~~l~~---~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~g 153 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSLY---LLLEILE---MEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEG 153 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHHH---HHHHHHT---TTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTT
T ss_pred hcCCCEEEEEeCCCchhhHHH---HHHHHHh---cCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcC
Confidence 58999999999998765433 4444443 4799999999999865544442 36778888999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 030524 159 IKLCCHTLNSLIT 171 (175)
Q Consensus 159 v~~~f~~l~~~~~ 171 (175)
++++|+++.+.+.
T Consensus 154 i~el~~~i~~~~~ 166 (258)
T 3a1s_A 154 LEELKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988764
No 117
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.95 E-value=1.3e-27 Score=163.68 Aligned_cols=160 Identities=18% Similarity=0.245 Sum_probs=114.0
Q ss_pred CCCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCC----------ccccc
Q 030524 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERFR 72 (175)
Q Consensus 3 ~~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~ 72 (175)
+.+....++|+++|++|+|||||++++++... ....++.+.+........+. .+.+||+|| ++.+.
T Consensus 17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~ 92 (195)
T 3pqc_A 17 DYPPPLKGEVAFVGRSNVGKSSLLNALFNRKI-AFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWK 92 (195)
T ss_dssp CCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCC-SCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHH
T ss_pred hCCCCCCeEEEEECCCCCCHHHHHHHHHcCcc-ccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHH
Confidence 34556679999999999999999999998863 23333333333333333333 478999999 66677
Q ss_pred ccccccccCC---cEEEEEEECCChhhHH--hHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC--CCCHHHHHHHHHhcC
Q 030524 73 SLIPSYIRDS---SVAVVVYDVASRQSFL--NTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR--QVSIEEGEAKSRELN 145 (175)
Q Consensus 73 ~~~~~~~~~~---d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~--~~~~~~~~~~~~~~~ 145 (175)
..+..++.++ |++++|+|++++.+.. .+..|+.. .++|+++|+||+|+.++. .....+.+.++...+
T Consensus 93 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 166 (195)
T 3pqc_A 93 RLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS------LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYG 166 (195)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH------cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcC
Confidence 7777777665 9999999998763332 23334332 269999999999986432 233445566666644
Q ss_pred -CeEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524 146 -VMFIETSAKAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 146 -~~~~~~s~~~~~~v~~~f~~l~~~~~~ 172 (175)
++++++||++|.|++++|++|.+.+..
T Consensus 167 ~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 167 EYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp CSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 799999999999999999999988754
No 118
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.95 E-value=2.6e-27 Score=173.28 Aligned_cols=164 Identities=12% Similarity=0.142 Sum_probs=125.4
Q ss_pred CCCCCceeEEEECCCCCCHHHHHHHHhcCCCCC-cccccceeeEEEEEEEECCeEEEEEEEeCCCccccc----------
Q 030524 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR---------- 72 (175)
Q Consensus 4 ~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------- 72 (175)
++...+-.|+++|.+|+|||||+|+|++..... ...+..+.+........+ ....+.+|||||+.++.
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHH
Confidence 455677899999999999999999999987652 222223223333333333 13579999999986544
Q ss_pred ccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcC--CeEEE
Q 030524 73 SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN--VMFIE 150 (175)
Q Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~--~~~~~ 150 (175)
..+..++..+|++++|+|++++.+++....|+..+.. .+.|+++|+||+|+.............+...++ .++++
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~ 160 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVP 160 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEE
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEE
Confidence 4566778899999999999998888887777777665 368999999999987455556667777777775 68999
Q ss_pred eccCCCCCHHHHHHHHHHHHh
Q 030524 151 TSAKAGFNIKLCCHTLNSLIT 171 (175)
Q Consensus 151 ~s~~~~~~v~~~f~~l~~~~~ 171 (175)
+||++|.|++++|+++.+.+.
T Consensus 161 vSA~~g~gv~~L~~~l~~~l~ 181 (308)
T 3iev_A 161 ISALKGANLDELVKTILKYLP 181 (308)
T ss_dssp CBTTTTBSHHHHHHHHHHHSC
T ss_pred EeCCCCCCHHHHHHHHHHhCc
Confidence 999999999999999988764
No 119
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.95 E-value=5.1e-28 Score=172.66 Aligned_cols=151 Identities=15% Similarity=0.184 Sum_probs=118.8
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc----------cccccc
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS----------LIPSYI 79 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~~ 79 (175)
.+|+++|++|+|||||+|+|.+........+..+.+.....+..++. .+.+|||||...+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 48999999999999999999998765555666776777777777764 689999999876654 455666
Q ss_pred --cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCC
Q 030524 80 --RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF 157 (175)
Q Consensus 80 --~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 157 (175)
.++|++|+|+|+++.++...+..++. ..++|+++++||+|+.+.+.... ....++..++++++++||++|.
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~l~------~~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~ 152 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQLF------ELGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNI 152 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHHHT------TSCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTB
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHHHH------HcCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCC
Confidence 89999999999998766655444332 23799999999999865443322 2455778889999999999999
Q ss_pred CHHHHHHHHHHH
Q 030524 158 NIKLCCHTLNSL 169 (175)
Q Consensus 158 ~v~~~f~~l~~~ 169 (175)
|++++|+++.+.
T Consensus 153 gi~el~~~i~~~ 164 (256)
T 3iby_A 153 GIPALQQSLLHC 164 (256)
T ss_dssp SHHHHHHHHHTC
T ss_pred CHHHHHHHHHhh
Confidence 999999998765
No 120
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.95 E-value=7.7e-28 Score=172.97 Aligned_cols=153 Identities=14% Similarity=0.171 Sum_probs=115.0
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccccc------cccccccc--
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR------SLIPSYIR-- 80 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~-- 80 (175)
.++|+++|++|+|||||+|+|++........+..+++ .....++. ...+.+||+||+..+. .++..++.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~--~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 79 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVE--RKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ 79 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCS--CEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEE--EEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence 5799999999999999999999876443333433333 23333444 5579999999988775 34556665
Q ss_pred CCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHH
Q 030524 81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160 (175)
Q Consensus 81 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~ 160 (175)
++|++|+|+|+++.++.. .|...+.. .++|+++++||+|+.+.+... .....++..++++++++||++|.|++
T Consensus 80 ~~d~vi~V~D~t~~e~~~---~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~ 152 (272)
T 3b1v_A 80 RADSILNVVDATNLERNL---YLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGVD 152 (272)
T ss_dssp CCSEEEEEEEGGGHHHHH---HHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSHH
T ss_pred CCCEEEEEecCCchHhHH---HHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCHH
Confidence 699999999999876543 34444443 479999999999986544433 35677888889999999999999999
Q ss_pred HHHHHHHHHHh
Q 030524 161 LCCHTLNSLIT 171 (175)
Q Consensus 161 ~~f~~l~~~~~ 171 (175)
++|+++.+.+.
T Consensus 153 el~~~i~~~~~ 163 (272)
T 3b1v_A 153 QVVKKAAHTTT 163 (272)
T ss_dssp HHHHHHHHSCT
T ss_pred HHHHHHHHHHh
Confidence 99999988653
No 121
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.94 E-value=2.3e-28 Score=170.53 Aligned_cols=147 Identities=17% Similarity=0.226 Sum_probs=107.1
Q ss_pred CCCCCCceeEEEECCCCCCHHHHHHHHhcCCCCC---cccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccc
Q 030524 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDN---TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 79 (175)
Q Consensus 3 ~~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 79 (175)
.......++|+++|++|+|||||+++|++..+.. .+.++.+.++ ....+.+||+||++.+...+..++
T Consensus 6 ~~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~ 76 (218)
T 1nrj_B 6 IKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYL 76 (218)
T ss_dssp ----CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHH
T ss_pred CCccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHH
Confidence 3445577999999999999999999999877543 2333333222 345689999999999998888888
Q ss_pred cC----CcEEEEEEECC-ChhhHHhHHHHHHHHHHh----cCCCCcEEEEEeCCCCCCCCCCC------HHHHHHHHHhc
Q 030524 80 RD----SSVAVVVYDVA-SRQSFLNTSKWIDEVRTE----RGSDVIIVLVGNKTDLVEKRQVS------IEEGEAKSREL 144 (175)
Q Consensus 80 ~~----~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~----~~~~~~~iiv~nk~D~~~~~~~~------~~~~~~~~~~~ 144 (175)
.+ +|++|+|+|++ +++++.....|+..+... ...++|+++++||+|+.+.+... ..+...++...
T Consensus 77 ~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~ 156 (218)
T 1nrj_B 77 KTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERR 156 (218)
T ss_dssp HHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 77 89999999999 889999999998888765 34689999999999997655433 44556666666
Q ss_pred CCeEEEeccCCCCC
Q 030524 145 NVMFIETSAKAGFN 158 (175)
Q Consensus 145 ~~~~~~~s~~~~~~ 158 (175)
+++++++|+++|.+
T Consensus 157 ~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 157 KKSLNEVERKINEE 170 (218)
T ss_dssp HHHHHC--------
T ss_pred hccccccccccccc
Confidence 67777788777654
No 122
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.94 E-value=9.2e-28 Score=173.04 Aligned_cols=155 Identities=18% Similarity=0.219 Sum_probs=118.1
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc----------cccc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS----------LIPS 77 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~ 77 (175)
.+++|+++|++|+|||||+|+|++........+..+.+.....+...+ ..+.+|||||+..+.. .+..
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHH
Confidence 468999999999999999999999876555556666666666666555 3578999999877662 2233
Q ss_pred cc--cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCC
Q 030524 78 YI--RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA 155 (175)
Q Consensus 78 ~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 155 (175)
++ .++|++|+|+|+++.++...+..++.+. ++|+++++||+|+.+.+... .....++..++++++++||++
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~------~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~ 152 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNLYLTLQLLEL------GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTR 152 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHHHHHHHHHHH------TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGG
T ss_pred HHhhcCCCEEEEEecCCChHHHHHHHHHHHhc------CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCC
Confidence 33 6999999999999876655544444332 69999999999986443322 134667788899999999999
Q ss_pred CCCHHHHHHHHHHHHh
Q 030524 156 GFNIKLCCHTLNSLIT 171 (175)
Q Consensus 156 ~~~v~~~f~~l~~~~~ 171 (175)
|.|++++|+++.+.+.
T Consensus 153 g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 153 GRGIEALKLAIDRYKA 168 (274)
T ss_dssp GHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999987653
No 123
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.94 E-value=1.3e-26 Score=166.85 Aligned_cols=157 Identities=20% Similarity=0.203 Sum_probs=121.1
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc------cccccc--
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS------LIPSYI-- 79 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~-- 79 (175)
..++|+++|++|+|||||+++|++........++.+.+........++. .+.+||+||...+.. .+..++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 3589999999999999999999998765556666777777777666664 489999999887766 455565
Q ss_pred cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCH
Q 030524 80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159 (175)
Q Consensus 80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 159 (175)
.++|++++|+|+++.+. ...|...+... ...|+++++||+|+.+.+....+ ...++..++++++++|+++|.|+
T Consensus 80 ~~~d~vi~v~D~~~~~~---~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi 153 (271)
T 3k53_A 80 GNADVIVDIVDSTCLMR---NLFLTLELFEM--EVKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGV 153 (271)
T ss_dssp TCCSEEEEEEEGGGHHH---HHHHHHHHHHT--TCCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTH
T ss_pred cCCcEEEEEecCCcchh---hHHHHHHHHhc--CCCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCH
Confidence 68999999999987642 22333333332 23999999999998644333322 67788888999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 030524 160 KLCCHTLNSLITV 172 (175)
Q Consensus 160 ~~~f~~l~~~~~~ 172 (175)
.++|+.+.+.+..
T Consensus 154 ~~l~~~i~~~~~~ 166 (271)
T 3k53_A 154 EELKRMIALMAEG 166 (271)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887643
No 124
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.94 E-value=3.5e-27 Score=165.04 Aligned_cols=165 Identities=13% Similarity=0.105 Sum_probs=108.5
Q ss_pred CCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEEC-CeEEEEEEEeCCCc----------cccc
Q 030524 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQ----------ERFR 72 (175)
Q Consensus 4 ~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~----------~~~~ 72 (175)
.+....++|+++|.+|+|||||+++|++...........+.+......... .....+.+|||||. +.+.
T Consensus 24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 103 (223)
T 4dhe_A 24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE 103 (223)
T ss_dssp SCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence 344567999999999999999999999986321111222212222222233 33357899999994 3445
Q ss_pred ccccccccC---CcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCC--HHHHHHHHHh----
Q 030524 73 SLIPSYIRD---SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS--IEEGEAKSRE---- 143 (175)
Q Consensus 73 ~~~~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~--~~~~~~~~~~---- 143 (175)
..+..++.. +|++++|+|++++.+. ....++..+.. .++|+++|+||+|+.+..... .....+....
T Consensus 104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 179 (223)
T 4dhe_A 104 QLLSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDA 179 (223)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhc
Confidence 555566655 7889999999875332 22334444433 468999999999986533221 1222222332
Q ss_pred ---cCCeEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524 144 ---LNVMFIETSAKAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 144 ---~~~~~~~~s~~~~~~v~~~f~~l~~~~~~ 172 (175)
.+++++++||++|.|+.++|++|.+.+..
T Consensus 180 ~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 180 GYAGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp TCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred ccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 45699999999999999999999987754
No 125
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.93 E-value=1.8e-25 Score=171.46 Aligned_cols=156 Identities=15% Similarity=0.150 Sum_probs=98.9
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCC-CCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccc--------cccc
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI--------PSYI 79 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~~ 79 (175)
.++|+++|++|+|||||+|+|++... .....+..+.+.....+..++ ..+.+|||||+.++...+ ..++
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 58899999999999999999998753 234445555566666666766 469999999987765433 4468
Q ss_pred cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCH
Q 030524 80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159 (175)
Q Consensus 80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 159 (175)
.++|++++|+|++++.+++.+..+...+ ... .++|+++|+||+|+.+.... ..+.+.....++++++||++|.|+
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l-~~l-~~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~GI 385 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEIRELK-AAH-PAAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGDGI 385 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHHHHHH-HHC-TTSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBSH
T ss_pred ccCCEEEEEEECCCCcchhhhHHHHHHH-Hhc-CCCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCCCH
Confidence 8999999999999988776433333222 222 27999999999998654432 223344432478999999999999
Q ss_pred HHHHHHHHHHHh
Q 030524 160 KLCCHTLNSLIT 171 (175)
Q Consensus 160 ~~~f~~l~~~~~ 171 (175)
+++|++|.+.+.
T Consensus 386 ~eL~~~i~~~~~ 397 (476)
T 3gee_A 386 DTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHHHTHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988775
No 126
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.93 E-value=1.2e-25 Score=171.57 Aligned_cols=160 Identities=19% Similarity=0.171 Sum_probs=114.1
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCc----------ccccccc
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ----------ERFRSLI 75 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~ 75 (175)
...++|+++|.+|+|||||+|++++.... ....+..+.+.....+..++. .+.+|||||+ +.|....
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence 35699999999999999999999987643 333444455555556666664 4899999997 3343333
Q ss_pred c-ccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHH-----HHhcCCeEE
Q 030524 76 P-SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAK-----SRELNVMFI 149 (175)
Q Consensus 76 ~-~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~-----~~~~~~~~~ 149 (175)
. .++.++|++++|+|++++.+++.. .|+..+.. .+.|+++++||+|+.+.+....++..+. ....+++++
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 326 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 326 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence 3 467899999999999998887765 45555543 4799999999999976655443333222 222367999
Q ss_pred EeccCCCCCHHHHHHHHHHHHhh
Q 030524 150 ETSAKAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 150 ~~s~~~~~~v~~~f~~l~~~~~~ 172 (175)
++||++|.|++++|+.+.+.+..
T Consensus 327 ~~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 327 FMSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHHH
Confidence 99999999999999998877653
No 127
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.93 E-value=1.3e-24 Score=161.94 Aligned_cols=161 Identities=19% Similarity=0.170 Sum_probs=119.3
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc---------cccc
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---------LIPS 77 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---------~~~~ 77 (175)
...++|+++|++|+|||||+++|.+........+..+.+........++ ..+.+|||||...+.. ....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 4568999999999999999999998764322222222233333333333 5689999999754321 1223
Q ss_pred cccCCcEEEEEEECCChh--hHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCC
Q 030524 78 YIRDSSVAVVVYDVASRQ--SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA 155 (175)
Q Consensus 78 ~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 155 (175)
+...+|++++|+|++++. +++....|+..+..... +.|+++|+||+|+.+... ..+...++...+++++++||++
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iSA~~ 319 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEEN--IKRLEKFVKEKGLNPIKISALK 319 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHH--HHHHHHHHHHTTCCCEECBTTT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHH--HHHHHHHHHhcCCCeEEEeCCC
Confidence 455799999999999877 67788888888877654 799999999999865432 2455667777889999999999
Q ss_pred CCCHHHHHHHHHHHHhh
Q 030524 156 GFNIKLCCHTLNSLITV 172 (175)
Q Consensus 156 ~~~v~~~f~~l~~~~~~ 172 (175)
|+|++++|+++.+.+..
T Consensus 320 g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 320 GTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp TBTHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHH
Confidence 99999999999887754
No 128
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.93 E-value=2.7e-26 Score=173.48 Aligned_cols=158 Identities=18% Similarity=0.191 Sum_probs=115.5
Q ss_pred CCCCceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCccccccc-------cc
Q 030524 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-------IP 76 (175)
Q Consensus 5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~ 76 (175)
+....++|+++|++|+|||||++++++.... ....+..+.+.........+.. .+.+|||||++++... +.
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~ 108 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKAR 108 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHH
Confidence 3456799999999999999999999987753 2333444445555666665543 7899999999877655 34
Q ss_pred ccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCC
Q 030524 77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG 156 (175)
Q Consensus 77 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 156 (175)
.++.++|++|+|+|++..+ ....|+..+... ++|+++|+||+|+...... ...+.++..++++++++||++|
T Consensus 109 ~~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg 180 (423)
T 3qq5_A 109 RVFYRADCGILVTDSAPTP---YEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQK 180 (423)
T ss_dssp HHHTSCSEEEEECSSSCCH---HHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCT
T ss_pred HHHhcCCEEEEEEeCCChH---HHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCC
Confidence 4788999999999984333 345565555543 7999999999999765554 5667777788999999999999
Q ss_pred CCHHHHHHHHHHHHh
Q 030524 157 FNIKLCCHTLNSLIT 171 (175)
Q Consensus 157 ~~v~~~f~~l~~~~~ 171 (175)
.|++++|++|.+.+.
T Consensus 181 ~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 181 KGFDDIGKTISEILP 195 (423)
T ss_dssp TSTTTHHHHHHHHSC
T ss_pred CCHHHHHHHHHHhhh
Confidence 999999999998773
No 129
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.93 E-value=4.9e-25 Score=160.58 Aligned_cols=155 Identities=17% Similarity=0.140 Sum_probs=107.9
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCC-cccccceeeEEEEEEEECCeEEEEEEEeCCCccc--------ccccccc
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--------FRSLIPS 77 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~ 77 (175)
.+..+|+++|.+|+|||||+|+|++..... ...+..+.+........+ ...+.+|||||..+ +......
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHHHHHH
Confidence 566789999999999999999999987642 222222222222222233 35799999999765 3445567
Q ss_pred cccCCcEEEEEEECCChhhHHhHHHHH-HHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhc-C-CeEEEeccC
Q 030524 78 YIRDSSVAVVVYDVASRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-N-VMFIETSAK 154 (175)
Q Consensus 78 ~~~~~d~~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~-~-~~~~~~s~~ 154 (175)
++..+|++++|+|++++.+.. ..|+ ..+... ..+.|+++++||+|+.+.... ....+..+ + .+++++||+
T Consensus 83 ~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~----~~~~~~~~~~~~~~~~iSA~ 155 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTPE--DELVARALKPL-VGKVPILLVGNKLDAAKYPEE----AMKAYHELLPEAEPRMLSAL 155 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGG-TTTSCEEEEEECGGGCSSHHH----HHHHHHHTSTTSEEEECCTT
T ss_pred HHhcCCEEEEEEECCCCCChH--HHHHHHHHHhh-cCCCCEEEEEECcccCCchHH----HHHHHHHhcCcCcEEEEeCC
Confidence 789999999999999874433 3444 334332 247999999999998643220 22233332 3 478999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 030524 155 AGFNIKLCCHTLNSLI 170 (175)
Q Consensus 155 ~~~~v~~~f~~l~~~~ 170 (175)
+|.|++++|+.+.+.+
T Consensus 156 ~g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 156 DERQVAELKADLLALM 171 (301)
T ss_dssp CHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHhc
Confidence 9999999999998765
No 130
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.92 E-value=4.7e-25 Score=169.18 Aligned_cols=160 Identities=20% Similarity=0.199 Sum_probs=117.2
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCC-CCcccccceeeEEEEEEEECCeEEEEEEEeCCC----------cccccccc
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERFRSLI 75 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~ 75 (175)
...++|+++|.+|+|||||++++++... .....+..+.+.....+..++. .+.+||||| ++.|....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence 3569999999999999999999997642 2333344444554455556664 689999999 56666554
Q ss_pred c-ccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhc-----CCeEE
Q 030524 76 P-SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-----NVMFI 149 (175)
Q Consensus 76 ~-~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~-----~~~~~ 149 (175)
. .++..+|++++|+|++++..- ....|...+.. .+.|+++|+||+|+.+.++...++..+.+.+. +++++
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~-~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIE-QDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 346 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHhhCCEEEEEEeCCCCcCH-HHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEE
Confidence 4 377899999999999875432 22334444433 46999999999999877777667776666655 57999
Q ss_pred EeccCCCCCHHHHHHHHHHHHhh
Q 030524 150 ETSAKAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 150 ~~s~~~~~~v~~~f~~l~~~~~~ 172 (175)
++||++|.|++++|.++.+.+..
T Consensus 347 ~~SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 347 FMSALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHH
T ss_pred EEcCCCCcCHHHHHHHHHHHHHH
Confidence 99999999999999999887654
No 131
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.92 E-value=1.2e-23 Score=159.31 Aligned_cols=167 Identities=19% Similarity=0.192 Sum_probs=106.6
Q ss_pred CCCCCCceeEEEECCCCCCHHHHHHHHhcCC---CCCcccc--cceeeEEEEEEEE-------------C--C----eEE
Q 030524 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDK---FDNTYQA--TIGIDFLSKTMYL-------------E--D----RTV 58 (175)
Q Consensus 3 ~~~~~~~~~i~l~G~~~~GKSsli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~ 58 (175)
|++....++|+++|+.++|||||+++|.+.. ...+..+ |....+....... + + ...
T Consensus 2 p~~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~ 81 (408)
T 1s0u_A 2 PLGSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLR 81 (408)
T ss_dssp ---CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEE
T ss_pred CcccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCccccccc
Confidence 5666778999999999999999999998643 2233333 3333333222211 1 1 136
Q ss_pred EEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC--CCHHH
Q 030524 59 RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--VSIEE 136 (175)
Q Consensus 59 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~--~~~~~ 136 (175)
.+.+||||||++|...+...+..+|++|+|+|++++........++..+.. . ...|+++++||+|+.+... ...++
T Consensus 82 ~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-l-~~~~iivv~NK~Dl~~~~~~~~~~~~ 159 (408)
T 1s0u_A 82 RVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEI-L-GIDKIIIVQNKIDLVDEKQAEENYEQ 159 (408)
T ss_dssp EEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-T-TCCCEEEEEECTTSSCTTTTTTHHHH
T ss_pred EEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHH-c-CCCeEEEEEEccCCCCHHHHHHHHHH
Confidence 899999999999998888888899999999999854211222222222222 1 2357999999999976443 23455
Q ss_pred HHHHHHh---cCCeEEEeccCCCCCHHHHHHHHHHHHh
Q 030524 137 GEAKSRE---LNVMFIETSAKAGFNIKLCCHTLNSLIT 171 (175)
Q Consensus 137 ~~~~~~~---~~~~~~~~s~~~~~~v~~~f~~l~~~~~ 171 (175)
.+.++.. .+++++++||++|+|+.+++++|.+.+.
T Consensus 160 i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 160 IKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 6666665 3579999999999999999999987654
No 132
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.92 E-value=7.4e-24 Score=160.25 Aligned_cols=165 Identities=16% Similarity=0.087 Sum_probs=116.4
Q ss_pred CCCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEE---------EE-------EE---ECCeEEEEEEEe
Q 030524 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLS---------KT-------MY---LEDRTVRLQLWD 64 (175)
Q Consensus 4 ~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~---------~~-------~~---~~~~~~~~~i~D 64 (175)
+.....++|+++|++|+|||||+++|++............ +... .. .. .......+.+||
T Consensus 3 ~~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiD 81 (403)
T 3sjy_A 3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAET-NIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFID 81 (403)
T ss_dssp CCCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEE-EEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEE
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCcccc-ceeeccccccccceecccccccccccccccccceEEEEE
Confidence 4556779999999999999999999998543221100000 0000 00 00 012236899999
Q ss_pred CCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC--CHHHHHHHHH
Q 030524 65 TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEGEAKSR 142 (175)
Q Consensus 65 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~--~~~~~~~~~~ 142 (175)
|||+++|...+..++.++|++|+|+|++++.++.....|+..+.... ..|+++++||+|+.+..+. ..++...+..
T Consensus 82 tPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~ 159 (403)
T 3sjy_A 82 APGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTK 159 (403)
T ss_dssp CCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998776777777776655442 3589999999998653321 1122333333
Q ss_pred hc---CCeEEEeccCCCCCHHHHHHHHHHHHh
Q 030524 143 EL---NVMFIETSAKAGFNIKLCCHTLNSLIT 171 (175)
Q Consensus 143 ~~---~~~~~~~s~~~~~~v~~~f~~l~~~~~ 171 (175)
.. +++++++||++|+|+.++|++|.+.+.
T Consensus 160 ~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 160 GTWAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp TSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred hhCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 22 568999999999999999999987653
No 133
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.91 E-value=6.8e-25 Score=162.02 Aligned_cols=158 Identities=18% Similarity=0.119 Sum_probs=115.8
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccc----cccccccccc---CC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----FRSLIPSYIR---DS 82 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~~~---~~ 82 (175)
.+|+|+|.+|+|||||+++|+.........+..+.+.....+..++. ..+.+||+||..+ +..+...+++ ++
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 36899999999999999999986533111111122222223334432 3689999999643 3334444544 59
Q ss_pred cEEEEEEECCC---hhhHHhHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcC--CeEEEeccCC
Q 030524 83 SVAVVVYDVAS---RQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN--VMFIETSAKA 155 (175)
Q Consensus 83 d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~--~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~ 155 (175)
|++|+|+|+++ +.+++.+..|+.++..+.. .++|+++|+||+|+.... ...+.++..++ ++++++||++
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~t 313 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVT 313 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCC
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCC
Confidence 99999999998 7889999999998887653 579999999999986432 34566666666 6899999999
Q ss_pred CCCHHHHHHHHHHHHhh
Q 030524 156 GFNIKLCCHTLNSLITV 172 (175)
Q Consensus 156 ~~~v~~~f~~l~~~~~~ 172 (175)
++|++++|.+|.+.+..
T Consensus 314 g~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 314 REGLRELLFEVANQLEN 330 (342)
T ss_dssp SSTTHHHHHHHHHHHTS
T ss_pred CcCHHHHHHHHHHHHhh
Confidence 99999999999988754
No 134
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.91 E-value=4.4e-24 Score=158.20 Aligned_cols=116 Identities=18% Similarity=0.254 Sum_probs=100.0
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEECCC----------hhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCC
Q 030524 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVAS----------RQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTD 125 (175)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D 125 (175)
.+.+.+||++|++.++..|..++.+++++|||||+++ ..++++...|+..+..... .++|+++++||+|
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D 271 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 271 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence 4679999999999999999999999999999999998 5679999999998887533 6899999999999
Q ss_pred CCCCC---------------CCCHHHHHHHHH-----------hcCCeEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524 126 LVEKR---------------QVSIEEGEAKSR-----------ELNVMFIETSAKAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 126 ~~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~s~~~~~~v~~~f~~l~~~~~~ 172 (175)
+.+++ .....++..++. ..++.+++|||++|.|+.++|.++.+.+..
T Consensus 272 L~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~ 344 (353)
T 1cip_A 272 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK 344 (353)
T ss_dssp HHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred chhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHH
Confidence 85332 356778888876 356789999999999999999999988764
No 135
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.91 E-value=3.3e-24 Score=164.63 Aligned_cols=152 Identities=20% Similarity=0.265 Sum_probs=114.0
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCC-CCcccccceeeEEEEEEEECCeEEEEEEEeCCCcc-cccc--------ccccc
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE-RFRS--------LIPSY 78 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~~~~--------~~~~~ 78 (175)
.++|+++|.||+|||||+|+|++... .....+..+.+.....+..++ ..+.+|||||.. ++.. ....+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 38999999999999999999998753 233344555566666666766 458999999987 5543 23456
Q ss_pred ccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCC
Q 030524 79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158 (175)
Q Consensus 79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 158 (175)
+.++|++|+|+|++++.+++... .++.+ .+.|+++|+||+|+.+. ....+...++. .+++++++||++|+|
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~G 391 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEG 391 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCC
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCC
Confidence 78999999999999887775533 22222 37899999999998643 34444444432 457899999999999
Q ss_pred HHHHHHHHHHHHh
Q 030524 159 IKLCCHTLNSLIT 171 (175)
Q Consensus 159 v~~~f~~l~~~~~ 171 (175)
++++|++|.+.+.
T Consensus 392 i~eL~~~l~~~~~ 404 (482)
T 1xzp_A 392 LEKLEESIYRETQ 404 (482)
T ss_dssp HHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988754
No 136
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.91 E-value=4.1e-24 Score=151.19 Aligned_cols=164 Identities=12% Similarity=0.121 Sum_probs=107.5
Q ss_pred CCCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccc--cceeeEEEEEEEECCeEEEEEEEeCCCc-----------ccc
Q 030524 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA--TIGIDFLSKTMYLEDRTVRLQLWDTAGQ-----------ERF 71 (175)
Q Consensus 5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~-----------~~~ 71 (175)
+....++|+++|++|+|||||++++++........+ +.+.+........++ ..+.+|||||. ..+
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~ 102 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEI 102 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHH
Confidence 345679999999999999999999999877655444 334444444555555 46899999993 234
Q ss_pred cccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCCC------HHHHHHHHHh
Q 030524 72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVS------IEEGEAKSRE 143 (175)
Q Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~iiv~nk~D~~~~~~~~------~~~~~~~~~~ 143 (175)
...+..+++++|++|+|+|+++... ....++..+....+ ...|+++|+||+|+.+..... ....+.++..
T Consensus 103 ~~~~~~~~~~~~~~l~v~d~~~~~~--~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~ 180 (239)
T 3lxx_A 103 IRCILLTSPGPHALLLVVPLGRYTE--EEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDI 180 (239)
T ss_dssp HHHHHHTTTCCSEEEEEEETTCCSS--HHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEeeCCCCCH--HHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHH
Confidence 4455566778999999999875433 12233333332221 246999999999986543332 2357778888
Q ss_pred cCCeEEEeccCCC-----CCHHHHHHHHHHHHhh
Q 030524 144 LNVMFIETSAKAG-----FNIKLCCHTLNSLITV 172 (175)
Q Consensus 144 ~~~~~~~~s~~~~-----~~v~~~f~~l~~~~~~ 172 (175)
++..++.++...+ .++.++|..+.+.+..
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 181 FGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 8888888877644 6889999887776543
No 137
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.91 E-value=9.2e-24 Score=154.53 Aligned_cols=117 Identities=15% Similarity=0.152 Sum_probs=99.3
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEECC----------ChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCCC
Q 030524 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVA----------SRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTD 125 (175)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~D 125 (175)
.+.+++||++|+++++..|.+|+.+++++|+|||++ +..++.+...|+..+..... .++|+++++||+|
T Consensus 166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~D 245 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD 245 (327)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHH
T ss_pred ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECch
Confidence 378999999999999999999999999999999665 67889888888888876543 6899999999999
Q ss_pred CCCCC----------------CCCHHHHHHHH----------HhcCCeEEEeccCCCCCHHHHHHHHHHHHhhh
Q 030524 126 LVEKR----------------QVSIEEGEAKS----------RELNVMFIETSAKAGFNIKLCCHTLNSLITVC 173 (175)
Q Consensus 126 ~~~~~----------------~~~~~~~~~~~----------~~~~~~~~~~s~~~~~~v~~~f~~l~~~~~~~ 173 (175)
+.+++ ..+.+++..++ ...++.++++||+++.||+++|..+.+.+..+
T Consensus 246 L~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~ 319 (327)
T 3ohm_A 246 LLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL 319 (327)
T ss_dssp HHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHH
Confidence 86533 46777887773 34567889999999999999999999988753
No 138
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.91 E-value=7.8e-24 Score=163.07 Aligned_cols=158 Identities=19% Similarity=0.180 Sum_probs=110.3
Q ss_pred CCCCceeEEEECCCCCCHHHHHHHHhcCC-------CCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccc
Q 030524 5 SALAKYKLVFLGDQSVGKTSIITRFMYDK-------FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 77 (175)
Q Consensus 5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 77 (175)
..+..++|+++|++++|||||+++|++.. ...+..+..+.+........++ ..+.+|||||+++|...+..
T Consensus 15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~ 92 (482)
T 1wb1_A 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVS 92 (482)
T ss_dssp CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHH
T ss_pred hcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHH
Confidence 33567999999999999999999999865 1222222233333223333444 57999999999999999999
Q ss_pred cccCCcEEEEEEECCCh---hhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC--CCCHHHHHHHHHhc----CCeE
Q 030524 78 YIRDSSVAVVVYDVASR---QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR--QVSIEEGEAKSREL----NVMF 148 (175)
Q Consensus 78 ~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~--~~~~~~~~~~~~~~----~~~~ 148 (175)
.+.++|++|+|+|++++ .+.+.+ ..+. . .++|.++++||+|+.++. +....+...++... ++++
T Consensus 93 ~~~~aD~~ilVvda~~g~~~qt~e~l----~~~~-~--~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~i 165 (482)
T 1wb1_A 93 AADIIDLALIVVDAKEGPKTQTGEHM----LILD-H--FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI 165 (482)
T ss_dssp HTTSCCEEEEEEETTTCSCHHHHHHH----HHHH-H--TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred HHhhCCEEEEEEecCCCccHHHHHHH----HHHH-H--cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceE
Confidence 99999999999999873 333322 2222 2 368889999999986432 11233445555554 5799
Q ss_pred EEeccCCCCCHHHHHHHHHHHHh
Q 030524 149 IETSAKAGFNIKLCCHTLNSLIT 171 (175)
Q Consensus 149 ~~~s~~~~~~v~~~f~~l~~~~~ 171 (175)
+++||++|+|+.+++++|.+.+.
T Consensus 166 i~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 166 IPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHhhc
Confidence 99999999999999999988764
No 139
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.91 E-value=1.6e-23 Score=159.94 Aligned_cols=152 Identities=18% Similarity=0.218 Sum_probs=103.6
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCccc---------ccccccccc
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------FRSLIPSYI 79 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~ 79 (175)
.+|+++|.||||||||+|+|++.... ....+..+.+........++. .+.+|||||.+. +...+..++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 37999999999999999999987643 233445555666666667764 479999999653 234566788
Q ss_pred cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHH-HHHHHhcCC-eEEEeccCCCC
Q 030524 80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEG-EAKSRELNV-MFIETSAKAGF 157 (175)
Q Consensus 80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~-~~~~~~~~~-~~~~~s~~~~~ 157 (175)
+++|++++|+|++++.+... .++..+... .++|+++++||+|+.+.. ..+. ..+. .+++ +++++||++|.
T Consensus 80 ~~ad~il~V~D~~~~~~~~d--~~i~~~l~~--~~~p~ilv~NK~D~~~~~---~~~~~~~~~-~lg~~~~~~iSA~~g~ 151 (439)
T 1mky_A 80 READLVLFVVDGKRGITKED--ESLADFLRK--STVDTILVANKAENLREF---EREVKPELY-SLGFGEPIPVSAEHNI 151 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHH--HHHHHHHHH--HTCCEEEEEESCCSHHHH---HHHTHHHHG-GGSSCSCEECBTTTTB
T ss_pred HhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEeCCCCcccc---HHHHHHHHH-hcCCCCEEEEeccCCC
Confidence 99999999999987644332 222222222 268999999999974321 1222 3343 5676 78999999999
Q ss_pred CHHHHHHHHHHHHh
Q 030524 158 NIKLCCHTLNSLIT 171 (175)
Q Consensus 158 ~v~~~f~~l~~~~~ 171 (175)
|+.++|+++.+.+.
T Consensus 152 gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 152 NLDTMLETIIKKLE 165 (439)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcc
Confidence 99999999988765
No 140
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.90 E-value=1.5e-23 Score=159.85 Aligned_cols=157 Identities=16% Similarity=0.183 Sum_probs=105.2
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCCC-------------------------------CcccccceeeEEEEEEEEC
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD-------------------------------NTYQATIGIDFLSKTMYLE 54 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 54 (175)
....++|+++|++++|||||+++|++.... .+..+..+++.....+.
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~-- 91 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE-- 91 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe--
Confidence 346799999999999999999999654210 11112233333333333
Q ss_pred CeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhh---HHhHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCC
Q 030524 55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQS---FLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKR 130 (175)
Q Consensus 55 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~-~iiv~nk~D~~~~~ 130 (175)
.....+.+|||||+++|...+...+.++|++|+|+|++++.. |+....+.+.+......++| +++++||+|+....
T Consensus 92 ~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~ 171 (439)
T 3j2k_7 92 TEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVN 171 (439)
T ss_pred cCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccc
Confidence 334579999999999999999999999999999999987632 22111222222222224577 89999999985321
Q ss_pred ------CCCHHHHHHHHHhcC------CeEEEeccCCCCCHHHHHH
Q 030524 131 ------QVSIEEGEAKSRELN------VMFIETSAKAGFNIKLCCH 164 (175)
Q Consensus 131 ------~~~~~~~~~~~~~~~------~~~~~~s~~~~~~v~~~f~ 164 (175)
+....+...++...+ ++++++||++|+|+.++++
T Consensus 172 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 172 WSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 112233444555544 4799999999999999654
No 141
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.90 E-value=3.5e-23 Score=162.12 Aligned_cols=160 Identities=19% Similarity=0.216 Sum_probs=114.7
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCC--CCCc-----c------cccceeeEE----EEEEEE-CCeEEEEEEEeCCCc
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDK--FDNT-----Y------QATIGIDFL----SKTMYL-EDRTVRLQLWDTAGQ 68 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~--~~~~-----~------~~~~~~~~~----~~~~~~-~~~~~~~~i~D~~G~ 68 (175)
.+..+|+++|+.++|||||+++|+... .... . ....+++.. ...+.. ++..+.+.+|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 345799999999999999999998631 1100 0 001122221 111111 455688999999999
Q ss_pred ccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC--
Q 030524 69 ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-- 146 (175)
Q Consensus 69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~-- 146 (175)
.+|...+...+..+|++|+|+|++++.+.+....|..... .++|+++++||+|+.... ......++...+++
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~ 157 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDP 157 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCG
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCc
Confidence 9999999999999999999999999888777777765543 479999999999986533 22334556666676
Q ss_pred -eEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524 147 -MFIETSAKAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 147 -~~~~~s~~~~~~v~~~f~~l~~~~~~ 172 (175)
.++++||++|.|+.++|+++.+.+.+
T Consensus 158 ~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 158 EEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp GGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred ccEEEEEeecCCCchHHHHHHHHhccc
Confidence 48999999999999999999887643
No 142
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.90 E-value=2.7e-23 Score=162.96 Aligned_cols=159 Identities=18% Similarity=0.211 Sum_probs=112.0
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCC--CCC-----c------ccccceeeEEEEEEEE-----CCeEEEEEEEeCCCcc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDK--FDN-----T------YQATIGIDFLSKTMYL-----EDRTVRLQLWDTAGQE 69 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~--~~~-----~------~~~~~~~~~~~~~~~~-----~~~~~~~~i~D~~G~~ 69 (175)
+-.+|+++|+.++|||||+++|+... ... . .....+++.......+ ++..+.+.+|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 35799999999999999999998632 110 0 0112233332222222 5567899999999999
Q ss_pred cccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC---
Q 030524 70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV--- 146 (175)
Q Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~--- 146 (175)
+|...+...+..+|++|+|+|++++.+.+....|..... .++|+++++||+|+.... ......++...+++
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~ 156 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDAT 156 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcc
Confidence 999999999999999999999999877777777765543 468999999999986533 23334556666676
Q ss_pred eEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524 147 MFIETSAKAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 147 ~~~~~s~~~~~~v~~~f~~l~~~~~~ 172 (175)
.++++||++|.|++++|+++.+.+.+
T Consensus 157 ~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 157 DAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp TCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred eEEEeecccCCCchhHHHHHhhcCCC
Confidence 48999999999999999999887643
No 143
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.90 E-value=2.2e-23 Score=149.18 Aligned_cols=163 Identities=10% Similarity=0.087 Sum_probs=105.5
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCC-CCccccc-ceeeEEEEEEEECCeEEEEEEEeCCCcccccccc--------
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQAT-IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI-------- 75 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-------- 75 (175)
....++|+++|++|+|||||++++++... .....++ .+.+........++ ..+.+|||||+..+....
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 34579999999999999999999998763 3333333 33444444445555 468999999986654322
Q ss_pred ---cccccCCcEEEEEEECCChhhH-HhHHHHHHHHHHhcCCCCcEEEEEe-CCCCCCCCCCCH-------HHHHHHHHh
Q 030524 76 ---PSYIRDSSVAVVVYDVASRQSF-LNTSKWIDEVRTERGSDVIIVLVGN-KTDLVEKRQVSI-------EEGEAKSRE 143 (175)
Q Consensus 76 ---~~~~~~~d~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~iiv~n-k~D~~~~~~~~~-------~~~~~~~~~ 143 (175)
..+++.+|++|+|+|+++.... ..+..++..+.... ...|.++++| |+|+... .... .+...++..
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~ 174 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAA 174 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHH
Confidence 2367899999999999862221 12333333332111 1356666666 9998632 1111 223445555
Q ss_pred cCCe---E--EEeccCCCCCHHHHHHHHHHHHhh
Q 030524 144 LNVM---F--IETSAKAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 144 ~~~~---~--~~~s~~~~~~v~~~f~~l~~~~~~ 172 (175)
.+.. + +++||++|.|+.++|.++.+.+..
T Consensus 175 ~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 175 CGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp TTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 5532 2 789999999999999999887765
No 144
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.90 E-value=1.6e-23 Score=148.85 Aligned_cols=163 Identities=10% Similarity=0.059 Sum_probs=105.2
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccc--eeeEEEEEEEECCeEEEEEEEeCCCc--------ccccccc
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATI--GIDFLSKTMYLEDRTVRLQLWDTAGQ--------ERFRSLI 75 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~ 75 (175)
....++|+++|.+|+|||||+|++++........++. +..........++ ..+.+|||||. +.+...+
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i 95 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEER 95 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHH
Confidence 3467999999999999999999999987654433332 2223333344454 56899999995 3333333
Q ss_pred cccc----cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCC------CHHHHHHHHH
Q 030524 76 PSYI----RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG---SDVIIVLVGNKTDLVEKRQV------SIEEGEAKSR 142 (175)
Q Consensus 76 ~~~~----~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~iiv~nk~D~~~~~~~------~~~~~~~~~~ 142 (175)
..++ +.+|++++|+|+++... ....+++.+....+ .+.|+++++||.|+.+.... .....+.+..
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~--~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~ 173 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLGRFTA--QDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVA 173 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETTBCCH--HHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhcCCCCCEEEEEEeCCCCCH--HHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHH
Confidence 3333 89999999999975321 12222333333322 36899999999998543211 1134577777
Q ss_pred hcCCeEEEeccCC-----CCCHHHHHHHHHHHHhh
Q 030524 143 ELNVMFIETSAKA-----GFNIKLCCHTLNSLITV 172 (175)
Q Consensus 143 ~~~~~~~~~s~~~-----~~~v~~~f~~l~~~~~~ 172 (175)
.++..+..++... +.++.+++..+.+.+..
T Consensus 174 ~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 174 ECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 8888777776655 57899999998877654
No 145
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.90 E-value=4.7e-24 Score=163.10 Aligned_cols=152 Identities=19% Similarity=0.233 Sum_probs=102.9
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccc--------cccc
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI--------PSYI 79 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~~ 79 (175)
.++|+++|++|+|||||+|+|++.... ....+..+.+.....+..++ ..+.+|||||..++...+ ..++
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CCC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 578999999999999999999986432 33344444455555556666 458999999976554332 3467
Q ss_pred cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCH
Q 030524 80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159 (175)
Q Consensus 80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 159 (175)
.++|++++|+|++++.+... ..++..+ ...|+++|+||+|+.+..... ..+.+. .+.+++++|+++|.|+
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l-----~~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~Gi 371 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGD-QEIYEQV-----KHRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQGI 371 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHH-HHHHHHH-----TTSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBSH
T ss_pred hcCCEEEEEeccCCCCCHHH-HHHHHhc-----cCCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCCH
Confidence 89999999999998766544 3444443 247999999999987654432 111111 3568999999999999
Q ss_pred HHHHHHHHHHHhh
Q 030524 160 KLCCHTLNSLITV 172 (175)
Q Consensus 160 ~~~f~~l~~~~~~ 172 (175)
+++|++|.+.+..
T Consensus 372 ~eL~~~i~~~~~~ 384 (462)
T 3geh_A 372 DSLETAILEIVQT 384 (462)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987654
No 146
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.90 E-value=3.8e-24 Score=154.20 Aligned_cols=164 Identities=12% Similarity=0.200 Sum_probs=94.0
Q ss_pred CCCCCCceeEEEECCCCCCHHHHHHHHhcCCCC-Ccc-------cccceeeEEEEEEEECCeEEEEEEEeCCCcccc---
Q 030524 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTY-------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF--- 71 (175)
Q Consensus 3 ~~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--- 71 (175)
|+..-..++|+++|.+|+|||||+|+|++.... ..+ .++.+.+.....+..++..+.+.+|||||....
T Consensus 2 p~~~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~ 81 (274)
T 3t5d_A 2 PLGSGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN 81 (274)
T ss_dssp -----CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCC
T ss_pred CCcCccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccc
Confidence 445556799999999999999999998876544 333 455556666666655666678999999997322
Q ss_pred ----cccc-------ccccc-------------CCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524 72 ----RSLI-------PSYIR-------------DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (175)
Q Consensus 72 ----~~~~-------~~~~~-------------~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~ 127 (175)
..+. ..++. .+|+++++++.++......-..++..+. .++|+++|+||+|+.
T Consensus 82 ~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~----~~~pvi~V~nK~D~~ 157 (274)
T 3t5d_A 82 SNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTL 157 (274)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHT----TTSCEEEEESSGGGS
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHh----ccCCEEEEEeccCCC
Confidence 1121 22222 3789999997665321122233333333 279999999999975
Q ss_pred CCCCCC--HHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 030524 128 EKRQVS--IEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170 (175)
Q Consensus 128 ~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~~ 170 (175)
...+.. .....+.+...+++++++|+.+++|+.+++.+|.+.+
T Consensus 158 ~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 158 TPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 432221 2234555667789999999999999999999988754
No 147
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.90 E-value=5.5e-23 Score=152.33 Aligned_cols=117 Identities=17% Similarity=0.177 Sum_probs=94.0
Q ss_pred eEEEEEEEeCCCcccccccccccccCCcEEEEEEECC----------ChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCC
Q 030524 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVA----------SRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKT 124 (175)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~ 124 (175)
..+.+.+||++|+++++..|..|+++++++|+|||++ +..++++...|+..+..... .++|+++++||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5689999999999999999999999999999999998 78899999999998876543 689999999999
Q ss_pred CCCCCCC--C-------------------CHHHHHHHHHh----------------cCCeEEEeccCCCCCHHHHHHHHH
Q 030524 125 DLVEKRQ--V-------------------SIEEGEAKSRE----------------LNVMFIETSAKAGFNIKLCCHTLN 167 (175)
Q Consensus 125 D~~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~s~~~~~~v~~~f~~l~ 167 (175)
|+.+++. + +.+++..++.. ..+.+++|||++++||+++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9854321 1 13455555432 224579999999999999999998
Q ss_pred HHHhh
Q 030524 168 SLITV 172 (175)
Q Consensus 168 ~~~~~ 172 (175)
+.+..
T Consensus 341 ~~I~~ 345 (354)
T 2xtz_A 341 ETLRR 345 (354)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 148
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.90 E-value=5e-23 Score=156.03 Aligned_cols=164 Identities=18% Similarity=0.188 Sum_probs=111.1
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCC---CCCcccc--cceeeEEEEEEEE-------------C--C----eEEEEE
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDK---FDNTYQA--TIGIDFLSKTMYL-------------E--D----RTVRLQ 61 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~ 61 (175)
....++|+++|++++|||||+++|++.. ...+..+ |....+....+.. + + ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 3456999999999999999999998643 2233333 3332333222211 1 1 136899
Q ss_pred EEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC--CCHHHHHH
Q 030524 62 LWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--VSIEEGEA 139 (175)
Q Consensus 62 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~--~~~~~~~~ 139 (175)
+|||||+++|...+...+..+|++|+|+|++++........++..+... ...|+++++||+|+.+... ...++.+.
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~--~~~~iivviNK~Dl~~~~~~~~~~~~i~~ 164 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII--GQKNIIIAQNKIELVDKEKALENYRQIKE 164 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH--TCCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc--CCCcEEEEEECccCCCHHHHHHHHHHHHH
Confidence 9999999999888888888999999999998642112222222222222 2357899999999865332 12334445
Q ss_pred HHHh---cCCeEEEeccCCCCCHHHHHHHHHHHHh
Q 030524 140 KSRE---LNVMFIETSAKAGFNIKLCCHTLNSLIT 171 (175)
Q Consensus 140 ~~~~---~~~~~~~~s~~~~~~v~~~f~~l~~~~~ 171 (175)
++.. .+++++++||++|+|+.+++++|.+.+.
T Consensus 165 ~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 165 FIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 5544 3579999999999999999999987654
No 149
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.90 E-value=8.5e-23 Score=148.88 Aligned_cols=158 Identities=15% Similarity=0.168 Sum_probs=108.8
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCCCC-cccccceeeEEEEEEEECCeEEEEEEEeCCCcc---------cccccc
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE---------RFRSLI 75 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~ 75 (175)
..+..+|+++|++|+|||||+|++++..... ...+..+.+........++ ..+.+|||||+. .+....
T Consensus 5 ~~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~ 82 (301)
T 1ega_A 5 KSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAA 82 (301)
T ss_dssp CCEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHH
Confidence 3456789999999999999999999876431 1122121121222222333 478999999987 344455
Q ss_pred cccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC-eEEEeccC
Q 030524 76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAK 154 (175)
Q Consensus 76 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~ 154 (175)
..++..+|++++|+|+++ +.....|+..... ..+.|+++++||+|+.............+...++. .++++|++
T Consensus 83 ~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~ 157 (301)
T 1ega_A 83 SSSIGDVELVIFVVEGTR---WTPDDEMVLNKLR--EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAE 157 (301)
T ss_dssp TSCCCCEEEEEEEEETTC---CCHHHHHHHHHHH--SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred HHHHhcCCEEEEEEeCCC---CCHHHHHHHHHHH--hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECC
Confidence 677899999999999976 3333334433332 24799999999999864222223445556666676 79999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 030524 155 AGFNIKLCCHTLNSLI 170 (175)
Q Consensus 155 ~~~~v~~~f~~l~~~~ 170 (175)
+|.|+.++++.+.+.+
T Consensus 158 ~g~~v~~l~~~i~~~l 173 (301)
T 1ega_A 158 TGLNVDTIAAIVRKHL 173 (301)
T ss_dssp TTTTHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHhC
Confidence 9999999999988654
No 150
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.90 E-value=1.6e-25 Score=173.31 Aligned_cols=159 Identities=17% Similarity=0.182 Sum_probs=113.1
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (175)
++.+|+++|++|+|||||+++|.+..+.....++.+.++....+..++ ...+.||||||++.|..++..++..+|++|+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 568999999999999999999998655444444444444333333322 2368999999999999999999999999999
Q ss_pred EEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCC-HHHHHHH---HHhc--CCeEEEeccCCCCCHHH
Q 030524 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS-IEEGEAK---SREL--NVMFIETSAKAGFNIKL 161 (175)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~-~~~~~~~---~~~~--~~~~~~~s~~~~~~v~~ 161 (175)
|+|++++...+.... +......++|+++++||+|+.+..... ..+.... +..+ .++++++||++|.|+.+
T Consensus 82 VVDa~dg~~~qt~e~----l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e 157 (537)
T 3izy_P 82 VVAADDGVMKQTVES----IQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA 157 (537)
T ss_dssp ECBSSSCCCHHHHHH----HHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred EEECCCCccHHHHHH----HHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence 999998654433322 222333578999999999986432211 1111111 1222 24899999999999999
Q ss_pred HHHHHHHHHh
Q 030524 162 CCHTLNSLIT 171 (175)
Q Consensus 162 ~f~~l~~~~~ 171 (175)
+|+++...+.
T Consensus 158 Lle~I~~l~~ 167 (537)
T 3izy_P 158 LAEATIALAE 167 (537)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhhh
Confidence 9999887653
No 151
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.90 E-value=1.6e-22 Score=150.70 Aligned_cols=161 Identities=19% Similarity=0.130 Sum_probs=107.5
Q ss_pred cee-EEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcc---------ccccccccc
Q 030524 9 KYK-LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE---------RFRSLIPSY 78 (175)
Q Consensus 9 ~~~-i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~ 78 (175)
.++ |+++|++|+|||||+|+|.+........+..+.+.....+.+++ ..+.+|||+|.- .+...+ ..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~ 254 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SE 254 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HH
Confidence 355 99999999999999999998765433334444455666677777 468999999962 122222 24
Q ss_pred ccCCcEEEEEEECCChh--hHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC-CHHHHHHHHHhc---CCeEEEec
Q 030524 79 IRDSSVAVVVYDVASRQ--SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-SIEEGEAKSREL---NVMFIETS 152 (175)
Q Consensus 79 ~~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~-~~~~~~~~~~~~---~~~~~~~s 152 (175)
+..+|++++|+|++++. ..+....|...+......+.|+++|+||+|+...... ....+..++..+ +.+++++|
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~S 334 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPIS 334 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECB
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 78899999999999876 4555555555444433367899999999998643210 011222333444 34789999
Q ss_pred cCCCCCHHHHHHHHHHHHhh
Q 030524 153 AKAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 153 ~~~~~~v~~~f~~l~~~~~~ 172 (175)
+++|.|+++++++|.+.+..
T Consensus 335 A~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 335 ALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp TTTTBSHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhcc
Confidence 99999999999999887654
No 152
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.90 E-value=1.3e-22 Score=150.79 Aligned_cols=116 Identities=20% Similarity=0.216 Sum_probs=91.1
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEECCC----------hhhHHhHHHHHHHHHHhc-CCCCcEEEEEeCCC
Q 030524 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVAS----------RQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTD 125 (175)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nk~D 125 (175)
.+.+.+||++|++.++..|..++.+++++|||+|+++ ..++.+...|+..+.... ..++|+++++||+|
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D 279 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD 279 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence 3689999999999999999999999999999999999 779999999999887753 26899999999999
Q ss_pred CCCCC----------------CCCHHHHHHHH--------H---hcCCeEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524 126 LVEKR----------------QVSIEEGEAKS--------R---ELNVMFIETSAKAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 126 ~~~~~----------------~~~~~~~~~~~--------~---~~~~~~~~~s~~~~~~v~~~f~~l~~~~~~ 172 (175)
+.+++ .....++..++ . ..++.++++||++++|++++|.++.+.+..
T Consensus 280 L~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~ 353 (362)
T 1zcb_A 280 LLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH 353 (362)
T ss_dssp HHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHH
Confidence 85322 25667777765 1 346789999999999999999999888764
No 153
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.89 E-value=2.5e-24 Score=160.50 Aligned_cols=161 Identities=16% Similarity=0.244 Sum_probs=90.8
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCC-Cccc--------ccceeeEEEEEEEECCeEEEEEEEeCCCc-------ccc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQ--------ATIGIDFLSKTMYLEDRTVRLQLWDTAGQ-------ERF 71 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~~ 71 (175)
..++|+++|++|+|||||+++|++.... ..+. ++.+.+........++....+.+|||||+ +.+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 3689999999999999999998775432 2221 34444444444445566778999999998 556
Q ss_pred ccccc-------ccccCC-------------cEEEEEEECCChhhHHhHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 030524 72 RSLIP-------SYIRDS-------------SVAVVVYDVASRQSFLNTSK-WIDEVRTERGSDVIIVLVGNKTDLVEKR 130 (175)
Q Consensus 72 ~~~~~-------~~~~~~-------------d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~iiv~nk~D~~~~~ 130 (175)
..++. .++.++ |+++|+++.+ ..++..+.. ++..+ ..++|+++|+||+|+...+
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~~ 190 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTLK 190 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCHH
Confidence 66654 444433 3455544431 344555442 33322 3679999999999987554
Q ss_pred CCCH--HHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHHHhhhh
Q 030524 131 QVSI--EEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLITVCI 174 (175)
Q Consensus 131 ~~~~--~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~~~~~~ 174 (175)
++.. .++..++..++++++++|+++|.+ .+.|.++.+.+...+
T Consensus 191 ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~i 235 (361)
T 2qag_A 191 ERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASI 235 (361)
T ss_dssp HHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcC
Confidence 4433 466777888899999999999999 888888888776543
No 154
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.4e-23 Score=143.51 Aligned_cols=116 Identities=17% Similarity=0.295 Sum_probs=90.1
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCC---cccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccC--
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDN---TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD-- 81 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~-- 81 (175)
...++|+++|++|+|||||++++++..+.. ...++.+. +.....+.+||+||++.+...+..++.+
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 116 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA---------DYDGSGVTLVDFPGHVKLRYKLSDYLKTRA 116 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee---------eecCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence 467899999999999999999999876543 12222221 1134568999999999998888888776
Q ss_pred --CcEEEEEEECC-ChhhHHhHHHHHHHHHHhc----CCCCcEEEEEeCCCCCCCCC
Q 030524 82 --SSVAVVVYDVA-SRQSFLNTSKWIDEVRTER----GSDVIIVLVGNKTDLVEKRQ 131 (175)
Q Consensus 82 --~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~~----~~~~~~iiv~nk~D~~~~~~ 131 (175)
+|++|+|||++ +++++..+..|+..+.... ..+.|+++|+||+|+.+...
T Consensus 117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 173 (193)
T 2ged_A 117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 173 (193)
T ss_dssp GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence 89999999999 8999999989888887653 35899999999999865443
No 155
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.89 E-value=6.9e-24 Score=163.68 Aligned_cols=153 Identities=18% Similarity=0.205 Sum_probs=97.8
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCC--CCc---------------------------ccccceeeEEEEEEEECCeEE
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKF--DNT---------------------------YQATIGIDFLSKTMYLEDRTV 58 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~~ 58 (175)
..+||+++|++|+|||||+++|++... ... .....+++.......++....
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 469999999999999999999976511 100 000112222222222333446
Q ss_pred EEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHh-----HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCC
Q 030524 59 RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLN-----TSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS 133 (175)
Q Consensus 59 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-----~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~ 133 (175)
.+.+|||||+++|...+..++.++|++|+|+|+++++.+.. ...+...+.... ...|+++++||+|+.+.++..
T Consensus 112 ~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~~~~iIvviNK~Dl~~~~~~~ 190 (483)
T 3p26_A 112 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKMDNVDWSQQR 190 (483)
T ss_dssp EEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-TCCCEEEEEECGGGGTTCHHH
T ss_pred eEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-CCCcEEEEEECcCcccchHHH
Confidence 79999999999999999999999999999999998754322 111222222222 234699999999987543333
Q ss_pred HHHH----HHHHHhc-----CCeEEEeccCCCCCHHH
Q 030524 134 IEEG----EAKSREL-----NVMFIETSAKAGFNIKL 161 (175)
Q Consensus 134 ~~~~----~~~~~~~-----~~~~~~~s~~~~~~v~~ 161 (175)
.++. ..+.... +++++++||++|+|+.+
T Consensus 191 ~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 191 FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 3333 3333333 46899999999999875
No 156
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.89 E-value=2.1e-23 Score=159.27 Aligned_cols=152 Identities=16% Similarity=0.158 Sum_probs=99.2
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCC-cccccceeeEEEEEEEECCeEEEEEEEeCCCcc--------cccccccccc
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE--------RFRSLIPSYI 79 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~ 79 (175)
..+|+++|.+|||||||+|+|++..... ...+..+.+..... .......+.+|||||++ .+...+..++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~--~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 80 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSS--AEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 80 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEE--CTTCSSCCEEEC---------CHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEE--EEECCceEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 3689999999999999999999875431 22222222333333 33233469999999975 5666777889
Q ss_pred cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC-eEEEeccCCCCC
Q 030524 80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFN 158 (175)
Q Consensus 80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~ 158 (175)
.++|++|+|+|+.++.+... .++..+.. ..++|+++++||+|+.+... +..++. .+++ .++++||++|.|
T Consensus 81 ~~ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~g 151 (436)
T 2hjg_A 81 DEADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLG 151 (436)
T ss_dssp HHCSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC---------CCCSSG-GGSSCCCEECBTTTTBT
T ss_pred HhCCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCccchh----hHHHHH-HcCCCCeEEEeCcCCCC
Confidence 99999999999988755443 33333333 25789999999999864321 111222 3565 789999999999
Q ss_pred HHHHHHHHHHHHh
Q 030524 159 IKLCCHTLNSLIT 171 (175)
Q Consensus 159 v~~~f~~l~~~~~ 171 (175)
+.++|+++.+.+.
T Consensus 152 v~~L~~~i~~~l~ 164 (436)
T 2hjg_A 152 LGDLLDAVAEHFK 164 (436)
T ss_dssp HHHHHHHHHHTGG
T ss_pred hHHHHHHHHHhcC
Confidence 9999999988764
No 157
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.89 E-value=3.3e-24 Score=163.54 Aligned_cols=159 Identities=18% Similarity=0.264 Sum_probs=104.7
Q ss_pred CCCCceeEEEECCCCCCHHHHHHHHhcC--CCCCccc---------------------------ccceeeEEEEEEEECC
Q 030524 5 SALAKYKLVFLGDQSVGKTSIITRFMYD--KFDNTYQ---------------------------ATIGIDFLSKTMYLED 55 (175)
Q Consensus 5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~--~~~~~~~---------------------------~~~~~~~~~~~~~~~~ 55 (175)
+....++|+++|++++|||||+++|+.. ....... ...+.+.......++.
T Consensus 2 ~~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~ 81 (435)
T 1jny_A 2 SQKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET 81 (435)
T ss_dssp --CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC
T ss_pred CCCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec
Confidence 3456799999999999999999999864 2221100 0111222222222333
Q ss_pred eEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHh----cCCCC-cEEEEEeCCCCCCCC
Q 030524 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE----RGSDV-IIVLVGNKTDLVEKR 130 (175)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~----~~~~~-~~iiv~nk~D~~~~~ 130 (175)
....+.+|||||+++|...+..++..+|++|+|+|+++ .+|+....|..+...+ ...++ |+++++||+|+.+..
T Consensus 82 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~ 160 (435)
T 1jny_A 82 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP 160 (435)
T ss_dssp SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST
T ss_pred CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcc
Confidence 44679999999999999999999999999999999998 6676543322222211 11244 588999999986521
Q ss_pred ------CCCHHHHHHHHHhcC-----CeEEEeccCCCCCHHHHHH
Q 030524 131 ------QVSIEEGEAKSRELN-----VMFIETSAKAGFNIKLCCH 164 (175)
Q Consensus 131 ------~~~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~~f~ 164 (175)
+....+.+.++..++ ++++++||++|+|+.+++.
T Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 112345666666665 6899999999999986543
No 158
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.89 E-value=4.3e-22 Score=152.09 Aligned_cols=159 Identities=21% Similarity=0.219 Sum_probs=106.0
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccc-----------
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI----------- 75 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----------- 75 (175)
..++|+++|++|+|||||+|++++.... ....+..+.+.....+..++. .+.+|||+|..++....
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence 4689999999999999999999987542 222333444555556667775 57899999974332211
Q ss_pred -cccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHH-----HHHhcCCeEE
Q 030524 76 -PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEA-----KSRELNVMFI 149 (175)
Q Consensus 76 -~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~-----~~~~~~~~~~ 149 (175)
..++..+|++++++|++++.+.+.. ++...... .+.|+++++||+|+.+.+.....+... +....+++++
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMER--RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI 332 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH--TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEE
Confidence 2356789999999999887655442 22222222 479999999999987654443333322 2223357999
Q ss_pred EeccCCCCCHHHHHHHHHHHHhh
Q 030524 150 ETSAKAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 150 ~~s~~~~~~v~~~f~~l~~~~~~ 172 (175)
++||++|.|++++|+.+.+.+..
T Consensus 333 ~~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 333 FTSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999998876543
No 159
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.89 E-value=6.4e-23 Score=150.62 Aligned_cols=117 Identities=21% Similarity=0.227 Sum_probs=95.9
Q ss_pred eEEEEEEEeCCCcccccccccccccCCcEEEEEEECC----------ChhhHHhHHHHHHHHHHhcC-CCCcEEEEEeCC
Q 030524 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVA----------SRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKT 124 (175)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nk~ 124 (175)
..+.+++||++|++.++..|..|+++++++|+|||++ +..++.+...|+..+..... .++|+++++||+
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~ 238 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKM 238 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECc
Confidence 3478999999999999999999999999999999998 77899999999988877644 689999999999
Q ss_pred CCCCC---------------CCCCHHHHHHHHHh---------------------------cCCeEEEeccCCCCCHHHH
Q 030524 125 DLVEK---------------RQVSIEEGEAKSRE---------------------------LNVMFIETSAKAGFNIKLC 162 (175)
Q Consensus 125 D~~~~---------------~~~~~~~~~~~~~~---------------------------~~~~~~~~s~~~~~~v~~~ 162 (175)
|+.++ ...+.+++.+++.. .++.++++||+++.+++.+
T Consensus 239 DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~v 318 (340)
T 4fid_A 239 DLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRV 318 (340)
T ss_dssp HHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHH
T ss_pred hhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHH
Confidence 98532 11245555444322 2367899999999999999
Q ss_pred HHHHHHHHhh
Q 030524 163 CHTLNSLITV 172 (175)
Q Consensus 163 f~~l~~~~~~ 172 (175)
|..+.+.|..
T Consensus 319 F~~v~~~Il~ 328 (340)
T 4fid_A 319 FMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 160
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.88 E-value=4.4e-23 Score=157.32 Aligned_cols=153 Identities=18% Similarity=0.187 Sum_probs=103.3
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCC--CCc----------cccc-------------------ceeeEEEEEEEECC
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF--DNT----------YQAT-------------------IGIDFLSKTMYLED 55 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~--~~~----------~~~~-------------------~~~~~~~~~~~~~~ 55 (175)
...++|+++|++++|||||+++|++... ... ...+ .+++..........
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 4569999999999999999999986531 110 0011 11111111122223
Q ss_pred eEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCC-cEEEEEeCCCCCCCCCC--
Q 030524 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDV-IIVLVGNKTDLVEKRQV-- 132 (175)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~iiv~nk~D~~~~~~~-- 132 (175)
....+.+|||||+++|...+..++.++|++|+|+|++++... ....++..+.. .++ |+++++||+|+.+..+.
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~~~---~~~~~iIvviNK~Dl~~~~~~~~ 177 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIASL---LGIKHIVVAINKMDLNGFDERVF 177 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHHHH---TTCCEEEEEEECTTTTTSCHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCeEEEEEEcCcCCcccHHHH
Confidence 345799999999999999888899999999999999986432 23344433332 234 68999999998653211
Q ss_pred --CHHHHHHHHHhcC-----CeEEEeccCCCCCHHHHH
Q 030524 133 --SIEEGEAKSRELN-----VMFIETSAKAGFNIKLCC 163 (175)
Q Consensus 133 --~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~~f 163 (175)
...+...++..++ ++++++||++|+|+.++|
T Consensus 178 ~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~ 215 (434)
T 1zun_B 178 ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS 215 (434)
T ss_dssp HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCC
T ss_pred HHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccc
Confidence 2344566677777 689999999999998743
No 161
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.88 E-value=4.8e-22 Score=156.04 Aligned_cols=158 Identities=22% Similarity=0.219 Sum_probs=106.2
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcc----cccceeeEEEEEE------------EECCeEEEEEEEeCCCccc
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTY----QATIGIDFLSKTM------------YLEDRTVRLQLWDTAGQER 70 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~----~~~~~~~~~~~~~------------~~~~~~~~~~i~D~~G~~~ 70 (175)
.++.+|+++|++++|||||+++|++....... ..+.+..+..... ..+.....+.+|||||++.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 35689999999999999999999875432211 1122211111100 0001112589999999999
Q ss_pred ccccccccccCCcEEEEEEECCC---hhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC-------------CH
Q 030524 71 FRSLIPSYIRDSSVAVVVYDVAS---RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-------------SI 134 (175)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~-------------~~ 134 (175)
|..++..++..+|++|+|+|+++ +.+++.+.. +.. .++|+++++||+|+.+.... ..
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~ 155 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI 155 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence 99999999999999999999998 555554432 222 47899999999998642211 00
Q ss_pred H----------HHHHHHHhc---------------CCeEEEeccCCCCCHHHHHHHHHHHHh
Q 030524 135 E----------EGEAKSREL---------------NVMFIETSAKAGFNIKLCCHTLNSLIT 171 (175)
Q Consensus 135 ~----------~~~~~~~~~---------------~~~~~~~s~~~~~~v~~~f~~l~~~~~ 171 (175)
. +......+. .++++++||++|.|+.++++++...+.
T Consensus 156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 0 111112222 238999999999999999999987654
No 162
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.88 E-value=7.7e-23 Score=154.36 Aligned_cols=160 Identities=14% Similarity=0.114 Sum_probs=110.2
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCC-------CCCc-------ccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDK-------FDNT-------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS 73 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 73 (175)
..++|+++|++++|||||+++|++.. +... .....+.+.......++.....+.+|||||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 46899999999999999999998731 0000 001222333323333433445789999999999998
Q ss_pred cccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC---CCHHHHHHHHHhcC----
Q 030524 74 LIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQ---VSIEEGEAKSRELN---- 145 (175)
Q Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nk~D~~~~~~---~~~~~~~~~~~~~~---- 145 (175)
.+..++..+|++|+|+|++++...+. ..++..+.. .++| +++++||+|+.+..+ ....+.+.++..++
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt-~e~l~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQT-REHLLLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE 157 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 88889999999999999998643333 333333322 3688 688999999864211 11235566676665
Q ss_pred -CeEEEeccCCCCC----------HHHHHHHHHHHHh
Q 030524 146 -VMFIETSAKAGFN----------IKLCCHTLNSLIT 171 (175)
Q Consensus 146 -~~~~~~s~~~~~~----------v~~~f~~l~~~~~ 171 (175)
++++++||++|.| +.++++.|.+.+.
T Consensus 158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 5899999999764 8899998877553
No 163
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.88 E-value=1.1e-22 Score=151.95 Aligned_cols=145 Identities=10% Similarity=0.050 Sum_probs=104.5
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEE
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (175)
+|+++|++++|||||+++|+ ....|. +..... +......+.+|||||+++|...+...+..+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~~giTi--~~~~~~--~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------KKGTSS--DITMYN--NDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------EEEEES--SSEEEE--ECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCEEE--EeeEEE--EecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 89999999999999999998 111122 222222 33333469999999999998888888899999999999
Q ss_pred CCChhhHHhHHHHHHHHHHhcCCCCcE-EEEEe-CCCCCCCCCCC--HHHHHHHHHhcC---CeEEE--eccCC---CCC
Q 030524 91 VASRQSFLNTSKWIDEVRTERGSDVII-VLVGN-KTDLVEKRQVS--IEEGEAKSRELN---VMFIE--TSAKA---GFN 158 (175)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiv~n-k~D~~~~~~~~--~~~~~~~~~~~~---~~~~~--~s~~~---~~~ 158 (175)
+. ..+...+.++..+.. .++|. ++++| |+|+ ++.... .++.+.++...+ +++++ +||++ |+|
T Consensus 93 -~~-g~~~qt~e~~~~~~~---~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g 166 (370)
T 2elf_A 93 -PQ-GLDAHTGECIIALDL---LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG 166 (370)
T ss_dssp -TT-CCCHHHHHHHHHHHH---TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred -CC-CCcHHHHHHHHHHHH---cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence 53 334445555554443 35776 88888 9998 432211 144555555543 69999 99999 999
Q ss_pred HHHHHHHHHHHHh
Q 030524 159 IKLCCHTLNSLIT 171 (175)
Q Consensus 159 v~~~f~~l~~~~~ 171 (175)
++++++.|.+.+.
T Consensus 167 i~~L~~~l~~~~~ 179 (370)
T 2elf_A 167 VDELKARINEVAE 179 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcc
Confidence 9999999988754
No 164
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.88 E-value=2.8e-23 Score=157.20 Aligned_cols=162 Identities=19% Similarity=0.171 Sum_probs=111.4
Q ss_pred CCCCceeEEEECCCCCCHHHHHHHHhcC--------CCCCc-------ccccceeeEEEEEEEECCeEEEEEEEeCCCcc
Q 030524 5 SALAKYKLVFLGDQSVGKTSIITRFMYD--------KFDNT-------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (175)
Q Consensus 5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 69 (175)
.....++|+++|++++|||||+++|++. .+... .....+.+........+.....+.+|||||++
T Consensus 7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~ 86 (405)
T 2c78_A 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA 86 (405)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG
T ss_pred CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH
Confidence 3456799999999999999999999873 11100 00122333333333344444678999999999
Q ss_pred cccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC---CCHHHHHHHHHhcC
Q 030524 70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQ---VSIEEGEAKSRELN 145 (175)
Q Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nk~D~~~~~~---~~~~~~~~~~~~~~ 145 (175)
+|...+..++.++|++|+|+|++++... ....++..+.. .++| +++++||+|+.+..+ ....+.+.++..++
T Consensus 87 ~f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~---~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 87 DYIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ---VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp GGHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHH---TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence 9999898999999999999999886533 34445544433 3678 889999999864211 11234556666665
Q ss_pred -----CeEEEeccCCCCC------------------HHHHHHHHHHHH
Q 030524 146 -----VMFIETSAKAGFN------------------IKLCCHTLNSLI 170 (175)
Q Consensus 146 -----~~~~~~s~~~~~~------------------v~~~f~~l~~~~ 170 (175)
++++++||++|.| +.++++.|.+.+
T Consensus 163 ~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 210 (405)
T 2c78_A 163 FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYI 210 (405)
T ss_dssp SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHS
T ss_pred ccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhc
Confidence 6899999999987 677777776644
No 165
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.88 E-value=2.4e-23 Score=159.96 Aligned_cols=155 Identities=17% Similarity=0.237 Sum_probs=92.5
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcC--CCCCc-----------------------------ccccceeeEEEEEEEECC
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYD--KFDNT-----------------------------YQATIGIDFLSKTMYLED 55 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 55 (175)
...++|+++|++++|||||+++|+.. ..... .....+++.....+..+
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~- 119 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE- 119 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS-
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC-
Confidence 45689999999999999999999752 11100 00111111111122223
Q ss_pred eEEEEEEEeCCCcccccccccccccCCcEEEEEEECCCh---hhHHhHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCC-
Q 030524 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR---QSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKR- 130 (175)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~-~iiv~nk~D~~~~~- 130 (175)
...+.+||||||++|...+...+..+|++|+|+|++++ .+|+....+.+.+......++| +++++||+|+.+..
T Consensus 120 -~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~ 198 (467)
T 1r5b_A 120 -HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW 198 (467)
T ss_dssp -SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred -CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence 35799999999999999999999999999999999986 3443322333333333335677 99999999985321
Q ss_pred -----CCCHHHHHHHHHhc-------CCeEEEeccCCCCCHHHHH
Q 030524 131 -----QVSIEEGEAKSREL-------NVMFIETSAKAGFNIKLCC 163 (175)
Q Consensus 131 -----~~~~~~~~~~~~~~-------~~~~~~~s~~~~~~v~~~f 163 (175)
+....+...++... +++++++||++|+|+.++|
T Consensus 199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 11223456666655 4579999999999998765
No 166
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.87 E-value=2.6e-22 Score=155.75 Aligned_cols=115 Identities=17% Similarity=0.150 Sum_probs=82.5
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCC-----------------CCcc-----cccceeeEEEEEEEECCeEEEEEEEeC
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKF-----------------DNTY-----QATIGIDFLSKTMYLEDRTVRLQLWDT 65 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~-----------------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~D~ 65 (175)
+..+|+++|++|+|||||+++|+.... ..++ ....++......+...+ +.+.+|||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liDT 89 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLDT 89 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEECC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEEC
Confidence 468999999999999999999972110 0000 01112222233333343 67999999
Q ss_pred CCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 030524 66 AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (175)
Q Consensus 66 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~ 128 (175)
||+.+|...+..++..+|++|+|+|++++.+.+....|. .+. ..++|+++++||+|+..
T Consensus 90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~---~~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCR---LRHTPIMTFINKMDRDT 148 (528)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHH---TTTCCEEEEEECTTSCC
T ss_pred CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHH---HcCCCEEEEEeCCCCcc
Confidence 999999999999999999999999999876666655443 222 24789999999999853
No 167
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.87 E-value=2.9e-24 Score=165.07 Aligned_cols=157 Identities=20% Similarity=0.183 Sum_probs=106.9
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (175)
.++.+|+++|++++|||||+++|.+........+..+.+.....+..++ ..+.+||||||+.|..++...+..+|++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 4678999999999999999999987554433333333232222222333 36899999999999999999999999999
Q ss_pred EEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC--CCHH--HHHHHHHhcC--CeEEEeccCCCCCHH
Q 030524 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--VSIE--EGEAKSRELN--VMFIETSAKAGFNIK 160 (175)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~--~~~~--~~~~~~~~~~--~~~~~~s~~~~~~v~ 160 (175)
+|+|++++...+.. .++.... ..++|+++++||+|+.+... .... +...++..++ ++++++||++|.|+.
T Consensus 80 LVVda~~g~~~qT~-e~l~~~~---~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~ 155 (501)
T 1zo1_I 80 LVVAADDGVMPQTI-EAIQHAK---AAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGID 155 (501)
T ss_dssp EEEETTTBSCTTTH-HHHHHHH---HTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCT
T ss_pred EEeecccCccHHHH-HHHHHHH---hcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcc
Confidence 99999874322111 2222222 24789999999999864211 1000 0001122233 689999999999999
Q ss_pred HHHHHHHHH
Q 030524 161 LCCHTLNSL 169 (175)
Q Consensus 161 ~~f~~l~~~ 169 (175)
++|+++...
T Consensus 156 eLle~I~~~ 164 (501)
T 1zo1_I 156 ELLDAILLQ 164 (501)
T ss_dssp THHHHTTTT
T ss_pred hhhhhhhhh
Confidence 999998653
No 168
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.87 E-value=5.3e-23 Score=162.18 Aligned_cols=154 Identities=16% Similarity=0.219 Sum_probs=101.4
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcc-------------------------------cccceeeEEEEEEEECC
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTY-------------------------------QATIGIDFLSKTMYLED 55 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~ 55 (175)
...++|+++|++|+|||||+++|++....... .+..+++.....+..
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~-- 242 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-- 242 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC--
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec--
Confidence 45799999999999999999999875321110 011222222222222
Q ss_pred eEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChh---hHHhHHHHHHHHHHhcCCCC-cEEEEEeCCCCCCCCC
Q 030524 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ---SFLNTSKWIDEVRTERGSDV-IIVLVGNKTDLVEKRQ 131 (175)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~-~~iiv~nk~D~~~~~~ 131 (175)
....+.||||||+++|...+..++.++|++|+|+|++++. ++.....+...+......++ |+++++||+|+.+..+
T Consensus 243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~ 322 (611)
T 3izq_1 243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ 322 (611)
T ss_dssp SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCH
T ss_pred CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhH
Confidence 3457999999999999999999999999999999998753 11111222222222222344 5899999999875332
Q ss_pred CC----HHHHHHHHHhc-----CCeEEEeccCCCCCHHHH
Q 030524 132 VS----IEEGEAKSREL-----NVMFIETSAKAGFNIKLC 162 (175)
Q Consensus 132 ~~----~~~~~~~~~~~-----~~~~~~~s~~~~~~v~~~ 162 (175)
.. ..+...++... +++++++||++|.|+.++
T Consensus 323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 22 22333344444 358999999999999865
No 169
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.87 E-value=1e-22 Score=156.18 Aligned_cols=155 Identities=17% Similarity=0.152 Sum_probs=101.9
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCC--------ccccccccccc
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG--------QERFRSLIPSY 78 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G--------~~~~~~~~~~~ 78 (175)
+...+|+++|.+|||||||+|+|++..... ...+.+.+..............+.+||||| ++.+...+..+
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~-v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 99 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA 99 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcc-cCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence 346799999999999999999999875431 122333344444444444445799999999 67777788888
Q ss_pred ccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCC-eEEEeccCCCC
Q 030524 79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGF 157 (175)
Q Consensus 79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~ 157 (175)
+.++|++|+|+|..++ +.....|+..+... .++|+++++||+|+.+... ...++ ...+. ..+++||.+|.
T Consensus 100 ~~~ad~il~VvD~~~~--~~~~d~~l~~~l~~--~~~pvilV~NK~D~~~~~~----~~~e~-~~lg~~~~~~iSA~~g~ 170 (456)
T 4dcu_A 100 MDEADVIIFMVNGREG--VTAADEEVAKILYR--TKKPVVLAVNKLDNTEMRA----NIYDF-YSLGFGEPYPISGTHGL 170 (456)
T ss_dssp HHHCSEEEEEEESSSC--SCHHHHHHHHHHTT--CCSCEEEEEECC-------------CCS-GGGSSSSEEECCTTTCT
T ss_pred HhhCCEEEEEEeCCCC--CChHHHHHHHHHHH--cCCCEEEEEECccchhhhh----hHHHH-HHcCCCceEEeeccccc
Confidence 9999999999998764 33333444444433 5799999999999753221 11111 12343 56799999999
Q ss_pred CHHHHHHHHHHHHh
Q 030524 158 NIKLCCHTLNSLIT 171 (175)
Q Consensus 158 ~v~~~f~~l~~~~~ 171 (175)
|+.++|+.+.+.+.
T Consensus 171 gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 171 GLGDLLDAVAEHFK 184 (456)
T ss_dssp THHHHHHHHHTTGG
T ss_pred chHHHHHHHHhhcc
Confidence 99999999887654
No 170
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.86 E-value=7.6e-23 Score=156.80 Aligned_cols=152 Identities=17% Similarity=0.215 Sum_probs=102.0
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcC--CCCCc-----------------------------ccccceeeEEEEEEEEC
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYD--KFDNT-----------------------------YQATIGIDFLSKTMYLE 54 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~ 54 (175)
....++|+++|++++|||||+++|++. ..... .....+++..... ++
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~--~~ 81 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWK--FE 81 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEE--EE
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEE--Ee
Confidence 346799999999999999999999864 11110 0011122222222 23
Q ss_pred CeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChh---hHH---hHHHHHHHHHHhcCCCCc-EEEEEeCCCCC
Q 030524 55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ---SFL---NTSKWIDEVRTERGSDVI-IVLVGNKTDLV 127 (175)
Q Consensus 55 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~-~iiv~nk~D~~ 127 (175)
.....+.+|||||+++|...+..++..+|++|+|+|++++. +|+ ....++.... . .++| +++++||+|+.
T Consensus 82 ~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~-~--~~v~~iivviNK~Dl~ 158 (458)
T 1f60_A 82 TPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAF-T--LGVRQLIVAVNKMDSV 158 (458)
T ss_dssp CSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHH-H--TTCCEEEEEEECGGGG
T ss_pred cCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHH-H--cCCCeEEEEEEccccc
Confidence 33467999999999999999999999999999999998763 232 2222222222 1 3565 89999999986
Q ss_pred CCCC----CCHHHHHHHHHhcC-----CeEEEeccCCCCCHHHH
Q 030524 128 EKRQ----VSIEEGEAKSRELN-----VMFIETSAKAGFNIKLC 162 (175)
Q Consensus 128 ~~~~----~~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~~ 162 (175)
+..+ ....+...++..++ ++++++||++|+|+.++
T Consensus 159 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 159 KWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 3211 12234555566665 68999999999998743
No 171
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.85 E-value=9.6e-22 Score=161.50 Aligned_cols=161 Identities=17% Similarity=0.124 Sum_probs=109.9
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCC-------C-----C--cccccceeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF-------D-----N--TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~-------~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 71 (175)
....++|+++|++++|||||+++|++... . + ....+.+++.......++.....+.+|||||+++|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 34569999999999999999999987310 0 0 01122333332222333344467999999999999
Q ss_pred cccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC---CCHHHHHHHHHhcC--
Q 030524 72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQ---VSIEEGEAKSRELN-- 145 (175)
Q Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nk~D~~~~~~---~~~~~~~~~~~~~~-- 145 (175)
...+..++..+|++|+|+|++++... ....++..+.. .++| +++++||+|+.+..+ ....+...++..++
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~---lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~ 448 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQ---VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP 448 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHH---HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHH---cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence 99888899999999999999986432 34444444433 2678 788999999864221 11245566676665
Q ss_pred ---CeEEEeccCCC--------CCHHHHHHHHHHHH
Q 030524 146 ---VMFIETSAKAG--------FNIKLCCHTLNSLI 170 (175)
Q Consensus 146 ---~~~~~~s~~~~--------~~v~~~f~~l~~~~ 170 (175)
++++++||++| .|+.++++.|.+.+
T Consensus 449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred ccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 68999999999 46888888887754
No 172
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.85 E-value=5.3e-22 Score=144.49 Aligned_cols=160 Identities=19% Similarity=0.194 Sum_probs=102.2
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcc------cccc----------------------eee------------
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTY------QATI----------------------GID------------ 45 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~------~~~~----------------------~~~------------ 45 (175)
....++|+++|.+|+|||||+|+|++..+.+.. .++. +.+
T Consensus 23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~ 102 (299)
T 2aka_B 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 345689999999999999999999997753211 1210 000
Q ss_pred ---------E--EEEEEEECCeEEEEEEEeCCCcc-------------cccccccccccCCcEEE-EEEECCChhhHHhH
Q 030524 46 ---------F--LSKTMYLEDRTVRLQLWDTAGQE-------------RFRSLIPSYIRDSSVAV-VVYDVASRQSFLNT 100 (175)
Q Consensus 46 ---------~--~~~~~~~~~~~~~~~i~D~~G~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~~~~~~ 100 (175)
. ....+... ....+.+|||||.. .+...+..++.+++.+| +|+|+++..+....
T Consensus 103 i~g~~~gi~~~~~~~~~~~~-~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~ 181 (299)
T 2aka_B 103 VTGTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA 181 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEET-TCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH
T ss_pred hcccCCCccccceEEEEeCC-CCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH
Confidence 0 00000011 12479999999963 34456677888888776 69999876443333
Q ss_pred HHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHh--cC-CeEEEeccCCCCCHHHHHHHHHHH
Q 030524 101 SKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE--LN-VMFIETSAKAGFNIKLCCHTLNSL 169 (175)
Q Consensus 101 ~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~--~~-~~~~~~s~~~~~~v~~~f~~l~~~ 169 (175)
..++..+. ..+.|+++|+||+|+.+.........+..... .+ .+++++||++|.|+.++|+++.+.
T Consensus 182 ~~~~~~~~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 182 LKIAKEVD---PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHHHHHC---TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHHHHhC---CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 33433332 35789999999999875544333222211111 13 368899999999999999998764
No 173
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.85 E-value=1.1e-22 Score=160.05 Aligned_cols=150 Identities=21% Similarity=0.237 Sum_probs=83.6
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCC--C-----------------------------CcccccceeeEEEEEEEEC
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF--D-----------------------------NTYQATIGIDFLSKTMYLE 54 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~ 54 (175)
....++|+++|++++|||||+++|++... . .+..+ +++.......+.
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~--GiTid~~~~~~~ 251 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERAR--GVTMDVASTTFE 251 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcC--CeeEEeeEEEEE
Confidence 34568999999999999999999964210 0 00111 222222222233
Q ss_pred CeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChh---hH--Hh-HHHHHHHHHHhcCCCCc-EEEEEeCCCCC
Q 030524 55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ---SF--LN-TSKWIDEVRTERGSDVI-IVLVGNKTDLV 127 (175)
Q Consensus 55 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~--~~-~~~~~~~~~~~~~~~~~-~iiv~nk~D~~ 127 (175)
.....+.||||||+++|...+...+..+|++|+|+|++++. ++ .. ....+..+. . .++| +++++||+|+.
T Consensus 252 ~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~-~--lgip~iIvviNKiDl~ 328 (592)
T 3mca_A 252 SDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLR-A--LGISEIVVSVNKLDLM 328 (592)
T ss_dssp -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHH-H--SSCCCEEEEEECGGGG
T ss_pred eCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHH-H--cCCCeEEEEEeccccc
Confidence 34467999999999999999999999999999999998643 22 11 222222222 2 3565 88999999986
Q ss_pred CCCCCC----HHHHHHHH-HhcCC-----eEEEeccCCCCCHH
Q 030524 128 EKRQVS----IEEGEAKS-RELNV-----MFIETSAKAGFNIK 160 (175)
Q Consensus 128 ~~~~~~----~~~~~~~~-~~~~~-----~~~~~s~~~~~~v~ 160 (175)
+..... ..+...+. ...++ +++++||++|.|+.
T Consensus 329 ~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 329 SWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred cccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 522111 22334444 44454 79999999999998
No 174
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.84 E-value=3.6e-20 Score=132.59 Aligned_cols=124 Identities=13% Similarity=0.157 Sum_probs=87.5
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCccccccccccccc-----
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR----- 80 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~----- 80 (175)
...++|+++|++|+|||||+++|++.... ....+..+..........++ ..+.+|||||++++......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 46799999999999999999999987642 22223333344444445555 47999999999887765554443
Q ss_pred ----CCcEEEEEEECCChhhHHh-HHHHHHHHHHhcCCC--CcEEEEEeCCCCCCCCCCC
Q 030524 81 ----DSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSD--VIIVLVGNKTDLVEKRQVS 133 (175)
Q Consensus 81 ----~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~--~~~iiv~nk~D~~~~~~~~ 133 (175)
++|++++|+++++.. +.. ...|+..+....+.+ .|+++++||+|+.+.....
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~ 170 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELS 170 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCC
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCcc
Confidence 789999999987654 433 346777776665533 4999999999986544444
No 175
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.84 E-value=8.3e-21 Score=131.41 Aligned_cols=158 Identities=16% Similarity=0.215 Sum_probs=99.9
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccc----------ccccc
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----------FRSLI 75 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~ 75 (175)
.....+|+++|++|+|||||++++++..+.....++.+.+........++ .+.+||+||... +....
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 34568999999999999999999998763333334444333333333333 478999999742 22223
Q ss_pred cccc---cCCcEEEEEEECCChhhHHh--HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC--CCCHHHHHHHHHhcC--C
Q 030524 76 PSYI---RDSSVAVVVYDVASRQSFLN--TSKWIDEVRTERGSDVIIVLVGNKTDLVEKR--QVSIEEGEAKSRELN--V 146 (175)
Q Consensus 76 ~~~~---~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~--~~~~~~~~~~~~~~~--~ 146 (175)
..++ ..++++++++|++++.+... +..|+ .. .++|+++++||+|+.... +.....+..++.+.+ +
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~----~~--~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~ 173 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA----VD--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV 173 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH----HH--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHH----HH--cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCC
Confidence 3333 47899999999988655432 22222 12 468999999999975432 112345555666554 4
Q ss_pred eEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524 147 MFIETSAKAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 147 ~~~~~s~~~~~~v~~~f~~l~~~~~~ 172 (175)
.++++|++++.++++++++|.+.+..
T Consensus 174 ~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 174 QVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred ceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 78999999999999999999887644
No 176
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.84 E-value=1.9e-20 Score=149.15 Aligned_cols=123 Identities=16% Similarity=0.145 Sum_probs=82.6
Q ss_pred CCCCCCCCceeEEEECCCCCCHHHHHHHHhcCCCCC-------------cccc---cceeeEEEEEEEECCeEEEEEEEe
Q 030524 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDN-------------TYQA---TIGIDFLSKTMYLEDRTVRLQLWD 64 (175)
Q Consensus 1 ~~~~~~~~~~~i~l~G~~~~GKSsli~~l~~~~~~~-------------~~~~---~~~~~~~~~~~~~~~~~~~~~i~D 64 (175)
|+........+|+++|+.|+|||||+++|++..... ++.+ ..++++......+....+.+.+||
T Consensus 1 ~~s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliD 80 (665)
T 2dy1_A 1 MGTEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLD 80 (665)
T ss_dssp -----CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEE
T ss_pred CCCCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEe
Confidence 444445567899999999999999999998532210 0000 112233233333333346799999
Q ss_pred CCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524 65 TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (175)
Q Consensus 65 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~ 127 (175)
|||+.+|...+..++..+|++++|+|+++....+. ..++..+.. .++|+++++||+|+.
T Consensus 81 TpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 81 APGYGDFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp CCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred CCCccchHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH---ccCCEEEEecCCchh
Confidence 99999999999999999999999999887644332 333333333 479999999999975
No 177
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.82 E-value=1.2e-19 Score=137.03 Aligned_cols=158 Identities=18% Similarity=0.176 Sum_probs=107.9
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCcccc----ccccccc---ccC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF----RSLIPSY---IRD 81 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~~~---~~~ 81 (175)
-.|+|+|++|+|||||++++.+.... ..+..+ +.......+..++ ...+.+||+||..+. ..+...+ +..
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ft-Tl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~er 235 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFT-TLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIAR 235 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTC-SSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccc-eecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHH
Confidence 35899999999999999999886432 111111 1122222233333 246899999996432 2222222 457
Q ss_pred CcEEEEEEECCChhhHHhHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCH
Q 030524 82 SSVAVVVYDVASRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159 (175)
Q Consensus 82 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 159 (175)
++.++.++|++ +..+..+..+..++..... ...|.++++||+|+... .........+...+++++.+||++++|+
T Consensus 236 a~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi 312 (416)
T 1udx_A 236 TRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGL 312 (416)
T ss_dssp SSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTH
T ss_pred HHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCH
Confidence 99999999997 5566677776666655432 35888999999998643 2334445555566889999999999999
Q ss_pred HHHHHHHHHHHhh
Q 030524 160 KLCCHTLNSLITV 172 (175)
Q Consensus 160 ~~~f~~l~~~~~~ 172 (175)
+++++++.+.+..
T Consensus 313 ~eL~~~i~~~l~~ 325 (416)
T 1udx_A 313 PALKEALHALVRS 325 (416)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988754
No 178
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.82 E-value=2.3e-21 Score=141.24 Aligned_cols=161 Identities=15% Similarity=0.205 Sum_probs=87.2
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcC-CCCCccc--------ccceeeEEEEEEEECCeEEEEEEEeCCCc-------ccc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYD-KFDNTYQ--------ATIGIDFLSKTMYLEDRTVRLQLWDTAGQ-------ERF 71 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~~ 71 (175)
..++|+++|++|+|||||++++.+. ..+.... ++............++....+.+||++|. +.+
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 4689999999999999999998875 3332221 12212222222233444568999999997 444
Q ss_pred ccccc-------cccc-------------CCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 030524 72 RSLIP-------SYIR-------------DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ 131 (175)
Q Consensus 72 ~~~~~-------~~~~-------------~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~ 131 (175)
..... .++. .+++++++.+.+. .+++.... .+......++++++|+||+|+...++
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~---~~l~~l~~~~~iilV~~K~Dl~~~~e 172 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV---AFMKAIHNKVNIVPVIAKADTLTLKE 172 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH---HHHHHHTTTSCEEEEECCGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH---HHHHHHHhcCCEEEEEEeCCCCCHHH
Confidence 44443 3332 2344555555322 12333331 22222234689999999999865433
Q ss_pred C--CHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHHHhhh
Q 030524 132 V--SIEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLITVC 173 (175)
Q Consensus 132 ~--~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~~~~~ 173 (175)
. ...++.+++..++++++++||+++ +++++|.++.+.+...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~ 215 (301)
T 2qnr_A 173 RERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKAS 215 (301)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcC
Confidence 2 245677888999999999999999 9999999999887654
No 179
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.81 E-value=1.7e-19 Score=140.11 Aligned_cols=117 Identities=21% Similarity=0.208 Sum_probs=77.6
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCc--------------------ccccceeeEEEEEEEECCeEEEEEEEeCCC
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNT--------------------YQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 67 (175)
+.++|+++|++|+|||||+++|+....... .....+.+.......+....+.+.+|||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 568999999999999999999986321000 001111121111122222336799999999
Q ss_pred cccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 030524 68 QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (175)
Q Consensus 68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~ 128 (175)
+.+|...+..++..+|++|+|+|++++...+ ...++..+ ...++|+++++||+|+..
T Consensus 92 ~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~---~~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 92 HEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVT---RLRDTPILTFMNKLDRDI 148 (529)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHH---TTTTCCEEEEEECTTSCC
T ss_pred ChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHH---HHcCCCEEEEEcCcCCcc
Confidence 9999988888999999999999998764322 12222222 225799999999999854
No 180
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.81 E-value=2.2e-19 Score=134.64 Aligned_cols=122 Identities=16% Similarity=0.186 Sum_probs=98.6
Q ss_pred EEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCC----------hhhHHhHHHHHHHHHHhc-CCCCcE
Q 030524 49 KTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVAS----------RQSFLNTSKWIDEVRTER-GSDVII 117 (175)
Q Consensus 49 ~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~ 117 (175)
..+.+++ +.+.+||++|++.++..|..|+.+++++|||||+++ ..+|++...|+..+.... ..++|+
T Consensus 210 ~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pi 287 (402)
T 1azs_C 210 TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISV 287 (402)
T ss_dssp EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCE
T ss_pred EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeE
Confidence 3444554 789999999999999999999999999999999999 889999999999988763 368999
Q ss_pred EEEEeCCCCCCCCC---C---------------------------CHHHHHHHH-----Hh--------cCCeEEEeccC
Q 030524 118 VLVGNKTDLVEKRQ---V---------------------------SIEEGEAKS-----RE--------LNVMFIETSAK 154 (175)
Q Consensus 118 iiv~nk~D~~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~s~~ 154 (175)
++++||+|+.+++. . ...++..++ .. .++.++++||+
T Consensus 288 iLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~ 367 (402)
T 1azs_C 288 ILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAV 367 (402)
T ss_dssp EEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTT
T ss_pred EEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEee
Confidence 99999999854321 1 134455543 22 24678899999
Q ss_pred CCCCHHHHHHHHHHHHhh
Q 030524 155 AGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 155 ~~~~v~~~f~~l~~~~~~ 172 (175)
++.||+++|.++.+.+..
T Consensus 368 d~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 368 DTENIRRVFNDCRDIIQR 385 (402)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHHHHH
Confidence 999999999998887754
No 181
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.81 E-value=1.9e-20 Score=139.75 Aligned_cols=154 Identities=20% Similarity=0.235 Sum_probs=103.6
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceee---E---------------------------------------
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGID---F--------------------------------------- 46 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~---~--------------------------------------- 46 (175)
-.+|+++|++|||||||+++|++..+.+......+.. .
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR 113 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence 3499999999999999999999976532222111100 0
Q ss_pred ------------EEEEEEECCeEEEEEEEeCCCcccc-------------cccccccccCCcEEEEEEECCChhhHHhHH
Q 030524 47 ------------LSKTMYLEDRTVRLQLWDTAGQERF-------------RSLIPSYIRDSSVAVVVYDVASRQSFLNTS 101 (175)
Q Consensus 47 ------------~~~~~~~~~~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~ 101 (175)
....+... ....+.+|||||...+ ..+...++.++|++|+++|.++.+... .
T Consensus 114 ~~g~~~~~s~~~i~l~i~~~-~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~ 190 (360)
T 3t34_A 114 ETGRSKAISSVPIHLSIYSP-NVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (360)
T ss_dssp TSCTTCCCCCSCEEEEEEET-TSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred hcCCCCCcccceEEEEEeCC-CCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence 00001111 1235899999997765 456778899999999999876543221 3
Q ss_pred HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHHHHHH
Q 030524 102 KWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKLCCHT 165 (175)
Q Consensus 102 ~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~ 165 (175)
.|+..+......+.|+++|+||+|+.+......+..+.+...++.+|+.++++++.++.+.+..
T Consensus 191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 191 DAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp HHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred HHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCH
Confidence 3344444444457899999999999766555555555556667789999999999888776554
No 182
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.81 E-value=3.3e-19 Score=142.60 Aligned_cols=161 Identities=14% Similarity=0.205 Sum_probs=106.0
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCC-cccccce-eeEE--------------------------------------
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIG-IDFL-------------------------------------- 47 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~-~~~~~~~-~~~~-------------------------------------- 47 (175)
..++|+++|.+|+|||||+|+|++....+ ...++.. ....
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 46899999999999999999999876432 2233221 0000
Q ss_pred --------------EEEEEECCeE--EEEEEEeCCCccc---ccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHH
Q 030524 48 --------------SKTMYLEDRT--VRLQLWDTAGQER---FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVR 108 (175)
Q Consensus 48 --------------~~~~~~~~~~--~~~~i~D~~G~~~---~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 108 (175)
...+..+... ..+.+|||||... ....+..+++++|++|+|+|++++.+......|...+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~ 227 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK 227 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence 0001111100 2589999999654 34566778899999999999998877766655543332
Q ss_pred HhcCCCCcEEEEEeCCCCCCCCCCCHH---H-------HH-----HHHHh--------cCCeEEEeccC-----------
Q 030524 109 TERGSDVIIVLVGNKTDLVEKRQVSIE---E-------GE-----AKSRE--------LNVMFIETSAK----------- 154 (175)
Q Consensus 109 ~~~~~~~~~iiv~nk~D~~~~~~~~~~---~-------~~-----~~~~~--------~~~~~~~~s~~----------- 154 (175)
. .+.|+++|+||+|+......+.+ + .. .+... ...+++++||+
T Consensus 228 ~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~ 304 (695)
T 2j69_A 228 G---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ 304 (695)
T ss_dssp T---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred h---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence 2 36789999999998654311110 1 11 11111 12479999999
Q ss_pred ---CCCCHHHHHHHHHHHHh
Q 030524 155 ---AGFNIKLCCHTLNSLIT 171 (175)
Q Consensus 155 ---~~~~v~~~f~~l~~~~~ 171 (175)
++.|+.+++..+.+.+.
T Consensus 305 ~~~~~~Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 305 ADLDGTGFPKFMDSLNTFLT 324 (695)
T ss_dssp CCCTTSSHHHHHHHHHHHHH
T ss_pred hhhhccCHHHHHHHHHHHHH
Confidence 99999999999887664
No 183
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.81 E-value=1.6e-19 Score=129.72 Aligned_cols=124 Identities=12% Similarity=0.116 Sum_probs=82.8
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCC-cccccceeeEEEEEEEECCeEEEEEEEeCCCccccccccc-------cc
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP-------SY 78 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~-------~~ 78 (175)
...++|+++|.+|+|||||+|+|++..... ...+..+..........+ ...+.+|||||+.++..... .+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA--GFTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEET--TEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeC--CeEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 357999999999999999999999876431 212222222222333333 35799999999876654322 11
Q ss_pred --ccCCcEEEEEEECCChhhHHh-HHHHHHHHHHhcCCC--CcEEEEEeCCCCCCCCCCC
Q 030524 79 --IRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSD--VIIVLVGNKTDLVEKRQVS 133 (175)
Q Consensus 79 --~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~--~~~iiv~nk~D~~~~~~~~ 133 (175)
...+|++++|+|++.. ++.. ...|+..+....+.+ .|+++|+||+|+.+.....
T Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~ 173 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLP 173 (270)
T ss_dssp TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCC
T ss_pred hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCC
Confidence 2478999999998653 3433 346777776655433 7999999999986554433
No 184
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.81 E-value=1.9e-20 Score=136.48 Aligned_cols=135 Identities=19% Similarity=0.159 Sum_probs=109.4
Q ss_pred HHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChh-hHHhHH
Q 030524 24 SIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ-SFLNTS 101 (175)
Q Consensus 24 sli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~ 101 (175)
+|+.+++.+.+. ..+.+|.+ +.+......++ .+.+||+ ++++..+++.++.++|++|+|||++++. ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiG-d~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVG-DRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTT-CEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCc-cEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 677788888877 78889988 44444332222 6899999 8999999999999999999999999997 788899
Q ss_pred HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcC--CeEEEeccCCCCCHHHHHHHHHHH
Q 030524 102 KWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN--VMFIETSAKAGFNIKLCCHTLNSL 169 (175)
Q Consensus 102 ~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~v~~~f~~l~~~ 169 (175)
.|+..+.. .++|+++|+||+|+.+.+.+ ++.++++..++ ++++++||++|.|++++|..+...
T Consensus 106 ~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ge 170 (301)
T 1u0l_A 106 KFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGK 170 (301)
T ss_dssp HHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSSS
T ss_pred HHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcCC
Confidence 99887654 47999999999998654332 44667777777 899999999999999999887543
No 185
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.80 E-value=2.2e-19 Score=143.52 Aligned_cols=116 Identities=20% Similarity=0.255 Sum_probs=82.3
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCC--C------CC-----c-----ccccceeeEEEEEEEECCeEEEEEEEeCCCc
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDK--F------DN-----T-----YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~--~------~~-----~-----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 68 (175)
.+..+|+++|++|+|||||+++|+... . .. + .....++......+..+ .+.+.+|||||+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~--~~~i~liDTPG~ 87 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK--DHRINIIDTPGH 87 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEET--TEEEEEECCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEEC--CeEEEEEECcCc
Confidence 456899999999999999999998421 1 00 0 01111112222222333 367999999999
Q ss_pred ccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 030524 69 ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (175)
Q Consensus 69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~ 128 (175)
.+|...+..++..+|++|+|+|++++.+.+....|.. +.. .++|+++++||+|+..
T Consensus 88 ~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 88 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG 143 (691)
T ss_dssp TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred cchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence 9999999999999999999999998877776665543 222 3799999999999854
No 186
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.80 E-value=3.3e-19 Score=130.67 Aligned_cols=111 Identities=20% Similarity=0.213 Sum_probs=69.4
Q ss_pred EEEEEEeCCCccc-------------ccccccccccCCcEEEEEEECCChhhH-HhHHHHHHHHHHhcCCCCcEEEEEeC
Q 030524 58 VRLQLWDTAGQER-------------FRSLIPSYIRDSSVAVVVYDVASRQSF-LNTSKWIDEVRTERGSDVIIVLVGNK 123 (175)
Q Consensus 58 ~~~~i~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~iiv~nk 123 (175)
..+.+|||||... +...+..++.++|++++|+|.++.... .....+...+ ...+.|+++|+||
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~---~~~~~~~i~v~NK 207 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEGKRTIGVITK 207 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSCSSEEEEEEC
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh---CCCCCcEEEEEcC
Confidence 4689999999643 445567788999999999997543211 1111222222 2257899999999
Q ss_pred CCCCCCCCCCHHHHHHHHHhcCCeEEEeccCC------CCCHHHHHHHHHHHHh
Q 030524 124 TDLVEKRQVSIEEGEAKSRELNVMFIETSAKA------GFNIKLCCHTLNSLIT 171 (175)
Q Consensus 124 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~v~~~f~~l~~~~~ 171 (175)
+|+.+......+..+......+..++++++.+ +.|+.+++..+.+.+.
T Consensus 208 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~ 261 (315)
T 1jwy_B 208 LDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFK 261 (315)
T ss_dssp TTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHH
T ss_pred cccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHh
Confidence 99875544223322211112235666666554 6889999988776654
No 187
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.80 E-value=1.2e-19 Score=136.97 Aligned_cols=159 Identities=13% Similarity=0.215 Sum_probs=82.9
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCC-Ccc-------cccceeeEEEEEEEECCeEEEEEEEeCCCcccccc------
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTY-------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS------ 73 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------ 73 (175)
..++|+++|++|+|||||+++|++.... ... .++.............+....+.+||++|...+..
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 3588999999999999999999987652 211 11222222222222233345789999999765311
Q ss_pred -------------------cccccccCCcEEEEEEECCCh-hhHHhHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC
Q 030524 74 -------------------LIPSYIRDSSVAVVVYDVASR-QSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQV 132 (175)
Q Consensus 74 -------------------~~~~~~~~~d~~i~v~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~ 132 (175)
+.+.++.++++.+++|..... .++.... .|+..+. .++|+++|+||+|+...+++
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~ev 185 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPEEC 185 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHHHH
Confidence 123345555554444444332 2444443 4555543 37999999999998655444
Q ss_pred CH--HHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 030524 133 SI--EEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNSLI 170 (175)
Q Consensus 133 ~~--~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~~ 170 (175)
.. ..+...+..++++++++|+.++.++.++|..+.+.+
T Consensus 186 ~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 186 QQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred HHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 43 567778888899999999999999999988877654
No 188
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.78 E-value=7e-18 Score=135.13 Aligned_cols=118 Identities=19% Similarity=0.233 Sum_probs=82.4
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCC--CCC-----------cccc---cceeeEE--EEEEEE-----CCeEEEEEEE
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDK--FDN-----------TYQA---TIGIDFL--SKTMYL-----EDRTVRLQLW 63 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~--~~~-----------~~~~---~~~~~~~--~~~~~~-----~~~~~~~~i~ 63 (175)
.+..+|+++|+.|+|||||+++|+... ... ++.+ ..+++.. ...... ++..+.+.+|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 456899999999999999999997531 110 0000 1112221 122222 2334789999
Q ss_pred eCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 030524 64 DTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (175)
Q Consensus 64 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~ 128 (175)
||||+.+|...+..++..+|++|+|+|+++....+....|. ... ..++|+++++||+|+..
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~-~~~---~~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR-QAN---KYKVPRIAFVNKMDRMG 148 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHH-HHH---HcCCCEEEEEeCCCccc
Confidence 99999999999999999999999999999876555444442 222 24799999999999853
No 189
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.77 E-value=2.2e-18 Score=137.81 Aligned_cols=118 Identities=23% Similarity=0.271 Sum_probs=83.3
Q ss_pred CCCCceeEEEECCCCCCHHHHHHHHhcC--CCC------C-----cc-----cccceeeEEEEEEEECCeEEEEEEEeCC
Q 030524 5 SALAKYKLVFLGDQSVGKTSIITRFMYD--KFD------N-----TY-----QATIGIDFLSKTMYLEDRTVRLQLWDTA 66 (175)
Q Consensus 5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~--~~~------~-----~~-----~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 66 (175)
+..+..+|+++|++|+|||||+++|+.. ... . ++ .+..++......+..++ ..+.+||||
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTP 83 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTP 83 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECc
Confidence 3456789999999999999999999852 111 0 00 01111111122233333 579999999
Q ss_pred CcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 030524 67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (175)
Q Consensus 67 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~ 128 (175)
|+.+|...+..++..+|++|+|+|++++.+.+....|.. +.. .++|+++++||+|+..
T Consensus 84 G~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 84 GHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp CCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred CCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence 999999999999999999999999998877666555543 332 3789999999999854
No 190
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.76 E-value=6.8e-19 Score=132.45 Aligned_cols=85 Identities=18% Similarity=0.203 Sum_probs=47.3
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceee--EEEEEE-------------------EECC-eEEEEEEEeCCC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGID--FLSKTM-------------------YLED-RTVRLQLWDTAG 67 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~-------------------~~~~-~~~~~~i~D~~G 67 (175)
++|+++|.||+|||||+|+|++........+..+.+ ...... .+++ ....+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 589999999999999999999876322222211111 111111 1233 246799999999
Q ss_pred ccc----cccccc---ccccCCcEEEEEEECCCh
Q 030524 68 QER----FRSLIP---SYIRDSSVAVVVYDVASR 94 (175)
Q Consensus 68 ~~~----~~~~~~---~~~~~~d~~i~v~d~~~~ 94 (175)
... ...+.. .+++++|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 753 222222 456899999999999875
No 191
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.73 E-value=8.6e-18 Score=117.16 Aligned_cols=154 Identities=18% Similarity=0.165 Sum_probs=95.5
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeE--------------EEEEEEE----------------CCeE
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDF--------------LSKTMYL----------------EDRT 57 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--------------~~~~~~~----------------~~~~ 57 (175)
...+|+++|.+|+|||||+++|+..............+. ....+.. ....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 357899999999999999999986521111011100000 0011111 0122
Q ss_pred EEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHH
Q 030524 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEG 137 (175)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~ 137 (175)
..+.+|||+|+.... ..+-...+.+++|+|+++... ....+... .+.|.++++||+|+.+.......+.
T Consensus 109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~--~~~~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~~~ 177 (221)
T 2wsm_A 109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDD--VVEKHPEI------FRVADLIVINKVALAEAVGADVEKM 177 (221)
T ss_dssp CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTT--HHHHCHHH------HHTCSEEEEECGGGHHHHTCCHHHH
T ss_pred CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcch--hhhhhhhh------hhcCCEEEEecccCCcchhhHHHHH
Confidence 468899999851111 111135788999999876532 11111111 1478899999999865434456666
Q ss_pred HHHHHhc--CCeEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524 138 EAKSREL--NVMFIETSAKAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 138 ~~~~~~~--~~~~~~~s~~~~~~v~~~f~~l~~~~~~ 172 (175)
...+... +++++++|+++|.|+.++|++|.+.+..
T Consensus 178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 6666654 4689999999999999999999887643
No 192
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.72 E-value=1.3e-18 Score=129.40 Aligned_cols=159 Identities=18% Similarity=0.183 Sum_probs=93.6
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCCCcc------cccce-------------------------------------
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTY------QATIG------------------------------------- 43 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~------~~~~~------------------------------------- 43 (175)
....+|+++|.+|+|||||+|+|++..+.+.. .++..
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 34579999999999999999999997653211 12100
Q ss_pred ------eeEEEEEEEEC-CeEEEEEEEeCCCcc-------------cccccccccccCCcEEEE-EEECCChhhHHhHHH
Q 030524 44 ------IDFLSKTMYLE-DRTVRLQLWDTAGQE-------------RFRSLIPSYIRDSSVAVV-VYDVASRQSFLNTSK 102 (175)
Q Consensus 44 ------~~~~~~~~~~~-~~~~~~~i~D~~G~~-------------~~~~~~~~~~~~~d~~i~-v~d~~~~~~~~~~~~ 102 (175)
+......+.+. .....+.+|||||.. .+..++..|+.+.+.+|+ +.+++.. +... .
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~--~~~~-~ 185 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD--LANS-D 185 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSC--GGGC-H
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCc--cchh-H
Confidence 00000001110 112469999999953 344566677766655544 5665542 2221 1
Q ss_pred HHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHH--HHhcCC-eEEEeccCCCCCHHHHHHHHHH
Q 030524 103 WIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAK--SRELNV-MFIETSAKAGFNIKLCCHTLNS 168 (175)
Q Consensus 103 ~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~--~~~~~~-~~~~~s~~~~~~v~~~f~~l~~ 168 (175)
+...+......+.|+++|+||+|+.+.........+.. ....++ +++.+||+++.|+.++|+.+.+
T Consensus 186 ~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 186 ALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 22222223335799999999999875433222221110 111232 6788999999999999998876
No 193
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.71 E-value=1.9e-19 Score=125.93 Aligned_cols=154 Identities=17% Similarity=0.208 Sum_probs=92.0
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEE------------EEEEEEC-Ce------------------
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFL------------SKTMYLE-DR------------------ 56 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~------------------ 56 (175)
...+|+++|++|||||||+++|+.......+.++...++. .....++ +.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4689999999999999999999976544333333333322 1111111 11
Q ss_pred -EEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHH
Q 030524 57 -TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIE 135 (175)
Q Consensus 57 -~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~ 135 (175)
...+.+.|++|.-... ..+-...+..+.+.|..+...... .. ... ...|.++++||+|+.+.......
T Consensus 117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~-~~~-----~~~~~iiv~NK~Dl~~~~~~~~~ 185 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KH-PGI-----MKTADLIVINKIDLADAVGADIK 185 (226)
T ss_dssp GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TC-HHH-----HTTCSEEEEECGGGHHHHTCCHH
T ss_pred CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hh-hhH-----hhcCCEEEEeccccCchhHHHHH
Confidence 1135555665521000 011112344556666432211110 00 011 13677999999998655445667
Q ss_pred HHHHHHHhc--CCeEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524 136 EGEAKSREL--NVMFIETSAKAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 136 ~~~~~~~~~--~~~~~~~s~~~~~~v~~~f~~l~~~~~~ 172 (175)
+...++... +++++++||++|.|+.++|+++.+.+..
T Consensus 186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 777777654 5799999999999999999999887653
No 194
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.69 E-value=7.7e-18 Score=125.38 Aligned_cols=103 Identities=17% Similarity=0.088 Sum_probs=68.6
Q ss_pred EEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCH--H
Q 030524 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI--E 135 (175)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~--~ 135 (175)
+.+.+|||||... .....+..+|++++|+|....+.++.+... + .+.|+++|+||+|+.+...... .
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~---~-----~~~p~ivVlNK~Dl~~~~~~~~~~~ 240 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG---V-----LELADIVVVNKADGEHHKEARLAAR 240 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT---S-----GGGCSEEEEECCCGGGHHHHHHHHH
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh---H-----hhcCCEEEEECCCCcChhHHHHHHH
Confidence 5789999999432 223345889999999998766544333211 1 2468899999999854322111 1
Q ss_pred HHHHHHH-------hcCCeEEEeccCCCCCHHHHHHHHHHHHh
Q 030524 136 EGEAKSR-------ELNVMFIETSAKAGFNIKLCCHTLNSLIT 171 (175)
Q Consensus 136 ~~~~~~~-------~~~~~~~~~s~~~~~~v~~~f~~l~~~~~ 171 (175)
+...... .++.+++++||++|+|++++++++.+.+.
T Consensus 241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 241 ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp HHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 1111111 12578999999999999999999988764
No 195
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.69 E-value=7.3e-16 Score=120.32 Aligned_cols=114 Identities=17% Similarity=0.144 Sum_probs=80.5
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCC------------------C----CcccccceeeEEEEEEEECCeEEEEEEEeC
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKF------------------D----NTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 65 (175)
+..+|+|+|+.++|||||.++|+...- . .+.....++......+..++ +.+.++||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDT 107 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDT 107 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeC
Confidence 468999999999999999999973210 0 11111122222223333344 67999999
Q ss_pred CCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524 66 AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (175)
Q Consensus 66 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~ 127 (175)
|||.+|.......+.-+|++|+|+|+..+-.-+....|.. ... .++|.++++||+|..
T Consensus 108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~-a~~---~~lp~i~fINK~Dr~ 165 (548)
T 3vqt_A 108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDV-CRM---RATPVMTFVNKMDRE 165 (548)
T ss_dssp CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSC
T ss_pred CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHH-HHH---hCCceEEEEecccch
Confidence 9999999999999999999999999987755555555533 322 479999999999974
No 196
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.69 E-value=6.1e-17 Score=131.95 Aligned_cols=117 Identities=17% Similarity=0.174 Sum_probs=85.3
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCC------------CC----cccc--cceeeEEEEEEE------------ECCe
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF------------DN----TYQA--TIGIDFLSKTMY------------LEDR 56 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~------------~~----~~~~--~~~~~~~~~~~~------------~~~~ 56 (175)
.+..+|+++|++|+|||||+++|+...- .. ++.. |.........+. .++.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 3568999999999999999999986411 00 0111 111111122222 2445
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (175)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~ 127 (175)
.+.+.+|||||+.+|...+..++..+|++|+|+|++++.+++....|..... .++|+++++||+|+.
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcc
Confidence 7889999999999999999999999999999999999888877665644332 478999999999975
No 197
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.69 E-value=9.4e-16 Score=113.59 Aligned_cols=146 Identities=12% Similarity=0.074 Sum_probs=88.6
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCe---------------EEEEEEEeCCCccccc-
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQERFR- 72 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~- 72 (175)
.++|+++|.||+|||||+|+|++........+..+.+.....+.+++. ...+.+||+||..++.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 378999999999999999999987643222221111111112233332 1469999999987643
Q ss_pred ---cccc---ccccCCcEEEEEEECCCh----------hhHHhHHHHHHHH-----------------------------
Q 030524 73 ---SLIP---SYIRDSSVAVVVYDVASR----------QSFLNTSKWIDEV----------------------------- 107 (175)
Q Consensus 73 ---~~~~---~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~----------------------------- 107 (175)
.+.. .+++++|++++|+|+++. +.++.+..+..++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~ 161 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFE 161 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHH
Confidence 2222 347899999999999852 2232222111111
Q ss_pred -----------HH-------------------h-cCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEeccC
Q 030524 108 -----------RT-------------------E-RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK 154 (175)
Q Consensus 108 -----------~~-------------------~-~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 154 (175)
.. . ....+|+++++|+.|..-.........+.++...+++++.+||+
T Consensus 162 ~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~ 239 (363)
T 1jal_A 162 LSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAA 239 (363)
T ss_dssp HHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHH
T ss_pred HHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechH
Confidence 00 0 01248999999999853212233566777788889999999965
No 198
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.67 E-value=5.5e-17 Score=126.73 Aligned_cols=120 Identities=21% Similarity=0.222 Sum_probs=79.7
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCC---CcccccceeeEEEE----------------------------------
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD---NTYQATIGIDFLSK---------------------------------- 49 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~---------------------------------- 49 (175)
....+|+++|.+|+|||||+|+|++..+. ....++........
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 35689999999999999999999998753 22222221100000
Q ss_pred --EEEECCe-EEEEEEEeCCCccc-----------ccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCC
Q 030524 50 --TMYLEDR-TVRLQLWDTAGQER-----------FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDV 115 (175)
Q Consensus 50 --~~~~~~~-~~~~~i~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (175)
....++. ...+.+|||||... +...+..++..+|++|+|+|+++....+....++..+.. .+.
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~ 219 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---HED 219 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---CGG
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---cCC
Confidence 0000000 02589999999764 445566778899999999999875444555566555432 468
Q ss_pred cEEEEEeCCCCCCC
Q 030524 116 IIVLVGNKTDLVEK 129 (175)
Q Consensus 116 ~~iiv~nk~D~~~~ 129 (175)
|+++|+||+|+...
T Consensus 220 pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 220 KIRVVLNKADMVET 233 (550)
T ss_dssp GEEEEEECGGGSCH
T ss_pred CEEEEEECCCccCH
Confidence 99999999998643
No 199
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.62 E-value=1.5e-15 Score=113.00 Aligned_cols=154 Identities=16% Similarity=0.144 Sum_probs=92.6
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCC-Ccccc-cceeeEEEEEEEECC-------------------eEEEEEEEeCCCc
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQA-TIGIDFLSKTMYLED-------------------RTVRLQLWDTAGQ 68 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~-~~~~~~~~~~~~~~~-------------------~~~~~~i~D~~G~ 68 (175)
++|+++|.||+|||||++++.+.... .++.. |...+.. ...+++ ....+.+||+||.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g--~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVG--VVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEE--EEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceecccee--eEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 68999999999999999999876422 12211 1111111 112211 2346999999998
Q ss_pred ccccc----c---ccccccCCcEEEEEEECCCh----------hhHHhHHHHHHHH------------------------
Q 030524 69 ERFRS----L---IPSYIRDSSVAVVVYDVASR----------QSFLNTSKWIDEV------------------------ 107 (175)
Q Consensus 69 ~~~~~----~---~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~------------------------ 107 (175)
.+..+ + ....++++|++++|+|+++. +.++.+..+..++
T Consensus 80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~ 159 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRE 159 (368)
T ss_dssp CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred cccccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchh
Confidence 65432 2 22347899999999999851 1222111100000
Q ss_pred -----------HHh----------------------c--CCCCcEEEEEeCCCC--CCC-CCCCHHHHHHHHHhcCCeEE
Q 030524 108 -----------RTE----------------------R--GSDVIIVLVGNKTDL--VEK-RQVSIEEGEAKSRELNVMFI 149 (175)
Q Consensus 108 -----------~~~----------------------~--~~~~~~iiv~nk~D~--~~~-~~~~~~~~~~~~~~~~~~~~ 149 (175)
... . -...|+++++||.|. .+. ........+.+++..+++++
T Consensus 160 ~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv 239 (368)
T 2dby_A 160 RLPLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVV 239 (368)
T ss_dssp GHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEE
Confidence 000 0 023799999999973 221 12345667778888899999
Q ss_pred EeccCCCCCHHHHHHH
Q 030524 150 ETSAKAGFNIKLCCHT 165 (175)
Q Consensus 150 ~~s~~~~~~v~~~f~~ 165 (175)
++||+...++.+++..
T Consensus 240 ~iSAk~E~el~eL~~~ 255 (368)
T 2dby_A 240 VVSARLEAELAELSGE 255 (368)
T ss_dssp EECHHHHHHHHTSCHH
T ss_pred EeechhHHHHHHhchH
Confidence 9999886665555443
No 200
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.61 E-value=2.3e-15 Score=111.71 Aligned_cols=101 Identities=12% Similarity=0.046 Sum_probs=61.1
Q ss_pred EEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHH
Q 030524 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEG 137 (175)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~ 137 (175)
+.+.++||+|... ........+|.+++|+|++++...+.+.. .+ ...|.++++||+|+.+..... ...
T Consensus 167 ~~~iliDT~Gi~~---~~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~~-~~~ 234 (349)
T 2www_A 167 YDIILIETVGVGQ---SEFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPAR-RIQ 234 (349)
T ss_dssp CSEEEEECCCC-----CHHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHHH-HHH
T ss_pred CCEEEEECCCcch---hhhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhHH-HHH
Confidence 4689999999531 12344678999999999987643322211 11 246778899999985321100 011
Q ss_pred HHHHH----------hcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 030524 138 EAKSR----------ELNVMFIETSAKAGFNIKLCCHTLNSLI 170 (175)
Q Consensus 138 ~~~~~----------~~~~~~~~~s~~~~~~v~~~f~~l~~~~ 170 (175)
..+.. .++.+++.+|+++|+|+++++++|.+.+
T Consensus 235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 11211 1245789999999999999999998765
No 201
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.59 E-value=7.6e-15 Score=104.72 Aligned_cols=110 Identities=15% Similarity=0.025 Sum_probs=68.2
Q ss_pred EEEEEEeCCCccccccccc------ccccCCcEEEEEEECCCh---hhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 030524 58 VRLQLWDTAGQERFRSLIP------SYIRDSSVAVVVYDVASR---QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (175)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~ 128 (175)
+.+.+|||||..+...... ..+.. +++++++|.... ..+.....+..... ...+.|+++++||+|+..
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~--~~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLID--LRLGATTIPALNKVDLLS 185 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH--HHHTSCEEEEECCGGGCC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh--cccCCCeEEEEecccccc
Confidence 4799999999866543221 23456 888889887533 22222221111111 113689999999999854
Q ss_pred CCCCCHHHHHH----------------------------HHHhcC--CeEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524 129 KRQVSIEEGEA----------------------------KSRELN--VMFIETSAKAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 129 ~~~~~~~~~~~----------------------------~~~~~~--~~~~~~s~~~~~~v~~~f~~l~~~~~~ 172 (175)
..+. .+... ++..++ ++++++|+++|+|++++|+++.+.+..
T Consensus 186 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 186 EEEK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp HHHH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cccH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 3211 11111 123333 489999999999999999999887643
No 202
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.58 E-value=5e-14 Score=104.91 Aligned_cols=153 Identities=12% Similarity=0.094 Sum_probs=96.3
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc-------cccccccC
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------LIPSYIRD 81 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~~~ 81 (175)
..+|+++|.||+|||||+|+|.+........+..+.+.....+..++ .++.+.|+||.-+-.+ ..-..+++
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 46899999999999999999999765544445555566666666676 4589999999532111 11234578
Q ss_pred CcEEEEEEECCChh-hHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC--------CCCCCCHHHHHHHHHhcCCeEEEec
Q 030524 82 SSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV--------EKRQVSIEEGEAKSRELNVMFIETS 152 (175)
Q Consensus 82 ~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~--------~~~~~~~~~~~~~~~~~~~~~~~~s 152 (175)
+|++++|+|+++|. .++.+...+....... ...|.+++.||.|.. .....+.++.+.....+.+..-++-
T Consensus 150 ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l-~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv~ 228 (376)
T 4a9a_A 150 CNLLFIILDVNKPLHHKQIIEKELEGVGIRL-NKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEIA 228 (376)
T ss_dssp CSEEEEEEETTSHHHHHHHHHHHHHHTTEEE-TCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEEE
T ss_pred cCccccccccCccHHHHHHHHHHHHHhhHhh-ccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCee
Confidence 99999999999873 2333444433322221 456777888999963 1234556666666666655222222
Q ss_pred cCCCCCHHHHHH
Q 030524 153 AKAGFNIKLCCH 164 (175)
Q Consensus 153 ~~~~~~v~~~f~ 164 (175)
...+...+++.+
T Consensus 229 ~~~nv~eddl~d 240 (376)
T 4a9a_A 229 FRCDATVDDLID 240 (376)
T ss_dssp ECSCCCHHHHHH
T ss_pred ecccCCHHHHHH
Confidence 233444555443
No 203
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.58 E-value=6.8e-16 Score=114.30 Aligned_cols=103 Identities=17% Similarity=0.106 Sum_probs=63.9
Q ss_pred EEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCH--H
Q 030524 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI--E 135 (175)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~--~ 135 (175)
+.+.++||||....... ....+|++++|+|.+.+..++.+.. .. .+.|.++|+||+|+.+...... .
T Consensus 149 ~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~ 217 (341)
T 2p67_A 149 YDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIARH 217 (341)
T ss_dssp CSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHHH
Confidence 57999999996543322 3578999999999876543322211 11 1367789999999854211110 1
Q ss_pred HHHHHHHhc-------CCeEEEeccCCCCCHHHHHHHHHHHHh
Q 030524 136 EGEAKSREL-------NVMFIETSAKAGFNIKLCCHTLNSLIT 171 (175)
Q Consensus 136 ~~~~~~~~~-------~~~~~~~s~~~~~~v~~~f~~l~~~~~ 171 (175)
+.+...... ..+++++||++|+|+++++++|.+.+.
T Consensus 218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 122111111 457899999999999999999987653
No 204
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.57 E-value=5e-16 Score=123.33 Aligned_cols=114 Identities=15% Similarity=0.215 Sum_probs=80.2
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCC--------CCC-----cc---cccceeeEEEEEEEECCeEEEEEEEeCCCcccccc
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDK--------FDN-----TY---QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS 73 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~--------~~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 73 (175)
.||+++|+.++|||||.++|+... ... ++ ....+++.......+.-..+.+.++|||||.+|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 589999999999999999997421 000 00 01123333333333444446799999999999999
Q ss_pred cccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524 74 LIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (175)
Q Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~ 127 (175)
.....+.-+|++|+|+|+..+-.-+....|. .... .++|.++++||+|..
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~-~a~~---~~lp~i~~INKmDr~ 132 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQTRILFH-ALRK---MGIPTIFFINKIDQN 132 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHHHHHHH-HHHH---HTCSCEECCEECCSS
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHHHHHHH-HHHH---cCCCeEEEEeccccc
Confidence 9999999999999999998764433333333 3333 268889999999974
No 205
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.57 E-value=8.9e-15 Score=106.56 Aligned_cols=111 Identities=20% Similarity=0.138 Sum_probs=86.9
Q ss_pred CeEEEEEEEe-CCC-----cccccccccccccCCcEEEEEEECCChh-hHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524 55 DRTVRLQLWD-TAG-----QERFRSLIPSYIRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (175)
Q Consensus 55 ~~~~~~~i~D-~~G-----~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~ 127 (175)
|+.+.+..+| +.| ++++..+.+.++.++|++++|+|++++. ++..+.+|+..+.. .++|+++|+||+|+.
T Consensus 47 GD~V~~~~~~~~~g~I~~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~ 123 (302)
T 2yv5_A 47 GDYVWGEVVDPNTFAIEEVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLL 123 (302)
T ss_dssp TCEEEEEEEETTEEEEEEECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGC
T ss_pred ceEEEEEEccCCeEEEEeeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCC
Confidence 3445555555 323 6788888899999999999999999986 88888999886654 479999999999986
Q ss_pred CCCCCC-HHHHHHHHHhcCCeEEEeccCCCCCHHHHHHHHHH
Q 030524 128 EKRQVS-IEEGEAKSRELNVMFIETSAKAGFNIKLCCHTLNS 168 (175)
Q Consensus 128 ~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~ 168 (175)
++.++. ..+...++...+++++++||++|.|++++|..+..
T Consensus 124 ~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 124 NEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTTT
T ss_pred CccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhccC
Confidence 543212 34455666677899999999999999999987654
No 206
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.57 E-value=5.5e-14 Score=113.01 Aligned_cols=116 Identities=21% Similarity=0.228 Sum_probs=78.6
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCC--------CCCc--------ccccceeeEEE--EEEEEC-----CeEEEEEEEe
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDK--------FDNT--------YQATIGIDFLS--KTMYLE-----DRTVRLQLWD 64 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~--------~~~~--------~~~~~~~~~~~--~~~~~~-----~~~~~~~i~D 64 (175)
+-.+|+|+|+.++|||||.++|+... .... .....+++... ...... ...+.++++|
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 44789999999999999999987421 1100 01112222222 222222 2357899999
Q ss_pred CCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524 65 TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (175)
Q Consensus 65 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~ 127 (175)
||||.+|.......+.-+|++|+|+|+..+-..+....|..... .++|.++++||+|..
T Consensus 92 TPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~----~~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 92 TPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK----YGVPRIVYVNKMDRQ 150 (709)
T ss_dssp CCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH----HTCCEEEEEECSSST
T ss_pred CCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH----cCCCeEEEEcccccc
Confidence 99999999999999999999999999987654444444444333 369999999999964
No 207
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.53 E-value=1.9e-14 Score=115.26 Aligned_cols=158 Identities=19% Similarity=0.187 Sum_probs=95.5
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCC-cccccce-------------------------------------------
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIG------------------------------------------- 43 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~-~~~~~~~------------------------------------------- 43 (175)
...+|+++|.+++|||||+|+|++..+.+ ....+..
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 45799999999999999999999976521 1111100
Q ss_pred -----e--eEEEEEEEECCeEEEEEEEeCCCccc-------------ccccccccc-cCCcEEEEEEECCChhhHHhHHH
Q 030524 44 -----I--DFLSKTMYLEDRTVRLQLWDTAGQER-------------FRSLIPSYI-RDSSVAVVVYDVASRQSFLNTSK 102 (175)
Q Consensus 44 -----~--~~~~~~~~~~~~~~~~~i~D~~G~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~~~~~~~~ 102 (175)
+ +.....+...+ ...+.++||||-.. ....+..|+ ..+|++++|+|+++...-+....
T Consensus 130 g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp CSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred CCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 0 00011111111 12478999999432 222344444 47899999999986532222222
Q ss_pred HHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH--hcC-CeEEEeccCCCCCHHHHHHHHHHH
Q 030524 103 WIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR--ELN-VMFIETSAKAGFNIKLCCHTLNSL 169 (175)
Q Consensus 103 ~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~--~~~-~~~~~~s~~~~~~v~~~f~~l~~~ 169 (175)
.+..+. ..+.|+++|+||+|+................ ..+ .+++.+||++|.|++++++.+.+.
T Consensus 209 ll~~L~---~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 209 IAKEVD---PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHHC---TTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHH---hcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 223232 3478999999999987554433221110000 123 267889999999999999988763
No 208
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.50 E-value=2.4e-14 Score=97.47 Aligned_cols=104 Identities=6% Similarity=-0.071 Sum_probs=71.8
Q ss_pred CCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHH---HHhc--CCCCcEEEEEeCC-CCCCCCCCCHHHHHH
Q 030524 66 AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV---RTER--GSDVIIVLVGNKT-DLVEKRQVSIEEGEA 139 (175)
Q Consensus 66 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~---~~~~--~~~~~~iiv~nk~-D~~~~~~~~~~~~~~ 139 (175)
+|++.++..|++|+.++|++|||+|.+|++.++ .+..+.++ .... ..++|++|++||. |+. ...+..+..+
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp--~Ams~~EI~e 186 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV--KRMPCFYLAH 186 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS--CBCCHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc--CCCCHHHHHH
Confidence 478999999999999999999999999987654 45444333 3222 1579999999985 663 3445555444
Q ss_pred HHH----hcCCeEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524 140 KSR----ELNVMFIETSAKAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 140 ~~~----~~~~~~~~~s~~~~~~v~~~f~~l~~~~~~ 172 (175)
... ...+.+..|||.+|+|+.+.++||.+.+..
T Consensus 187 ~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 187 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 223 (227)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred HcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence 322 235689999999999999999999877654
No 209
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.48 E-value=7e-14 Score=103.27 Aligned_cols=103 Identities=11% Similarity=0.046 Sum_probs=61.5
Q ss_pred EEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHH
Q 030524 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEG 137 (175)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~ 137 (175)
..+.++||+|...-. ......+|.+++++|...++..+.+.... . ..+.++++||+|+...........
T Consensus 148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i---~-----~~~~ivvlNK~Dl~~~~~~s~~~~ 216 (337)
T 2qm8_A 148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGI---F-----ELADMIAVNKADDGDGERRASAAA 216 (337)
T ss_dssp CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTH---H-----HHCSEEEEECCSTTCCHHHHHHHH
T ss_pred CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHH---h-----ccccEEEEEchhccCchhHHHHHH
Confidence 568999999954221 12346899999999986543322111111 1 234567779999643221111112
Q ss_pred HHHHHh----------cCCeEEEeccCCCCCHHHHHHHHHHHHh
Q 030524 138 EAKSRE----------LNVMFIETSAKAGFNIKLCCHTLNSLIT 171 (175)
Q Consensus 138 ~~~~~~----------~~~~~~~~s~~~~~~v~~~f~~l~~~~~ 171 (175)
+.+... +..+++.+|++++.|++++++.|.+...
T Consensus 217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 217 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 222211 1457899999999999999999887653
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.42 E-value=1.5e-13 Score=102.78 Aligned_cols=88 Identities=16% Similarity=0.100 Sum_probs=51.3
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCe---------------EEEEEEEeCCCccccc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQERFR 72 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~ 72 (175)
..++|+++|.+|+|||||+|+|.+........+..+.+.....+.+++. ...+.+||+||.....
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 4589999999999999999999987654333343443433444444432 2358999999977644
Q ss_pred c-------cccccccCCcEEEEEEECCChh
Q 030524 73 S-------LIPSYIRDSSVAVVVYDVASRQ 95 (175)
Q Consensus 73 ~-------~~~~~~~~~d~~i~v~d~~~~~ 95 (175)
+ .+..+++++|++++|+|+++.+
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC----
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 3 3456678999999999998543
No 211
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.38 E-value=3.2e-13 Score=96.28 Aligned_cols=105 Identities=6% Similarity=-0.086 Sum_probs=76.4
Q ss_pred CCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHH---HHHHhc--CCCCcEEEEEeC-CCCCCCCCCCHHHHH
Q 030524 65 TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWID---EVRTER--GSDVIIVLVGNK-TDLVEKRQVSIEEGE 138 (175)
Q Consensus 65 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~---~~~~~~--~~~~~~iiv~nk-~D~~~~~~~~~~~~~ 138 (175)
.+|++..+..|++|+.++|++|||+|.+|++.++ .+..+. .+.... ..+.|++|++|| .|+.. ..+..+..
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~ 270 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLA 270 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHH
Confidence 4678999999999999999999999999998754 444333 233221 268999999996 68743 44444544
Q ss_pred HHHH----hcCCeEEEeccCCCCCHHHHHHHHHHHHhh
Q 030524 139 AKSR----ELNVMFIETSAKAGFNIKLCCHTLNSLITV 172 (175)
Q Consensus 139 ~~~~----~~~~~~~~~s~~~~~~v~~~f~~l~~~~~~ 172 (175)
+... ...+.+..|||.+|+|+.+.++||.+.+..
T Consensus 271 e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 271 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred HHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence 4322 235679999999999999999999987654
No 212
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.36 E-value=2.9e-11 Score=90.61 Aligned_cols=86 Identities=17% Similarity=0.167 Sum_probs=58.9
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCC-CCcccccceeeEEEEEEEECCe---------------EEEEEEEeCCCcccc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQERF 71 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~ 71 (175)
...+++++|++|+|||||+|+|++... .....+..+.+.....+.+++. ...+.+||+||....
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 457999999999999999999999765 3333443344444444445441 135899999995332
Q ss_pred -------cccccccccCCcEEEEEEECCC
Q 030524 72 -------RSLIPSYIRDSSVAVVVYDVAS 93 (175)
Q Consensus 72 -------~~~~~~~~~~~d~~i~v~d~~~ 93 (175)
...+...+.++|++++|+|+.+
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2233445678999999999863
No 213
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.09 E-value=2.3e-10 Score=86.39 Aligned_cols=139 Identities=14% Similarity=0.181 Sum_probs=69.9
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcc----cccceeeEEEEEEEECCeEEEEEEEeCCCccccc-------------
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTY----QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR------------- 72 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------------- 72 (175)
++++|+|++|+|||||++.+++..+.... .+..............+-...+.++|++|.....
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 56999999999999999999886533211 1111112112222222223468899999854210
Q ss_pred -ccc----ccc---------ccCC--cE-EEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCC--
Q 030524 73 -SLI----PSY---------IRDS--SV-AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS-- 133 (175)
Q Consensus 73 -~~~----~~~---------~~~~--d~-~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~-- 133 (175)
..+ ..+ ...+ |+ +.|+.|...+-+ ... .++......++|+|++.||+|.....+..
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~--~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l 197 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLK--SLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKF 197 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---C--HHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCC--HHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHH
Confidence 011 111 1122 34 555666554322 221 12223333679999999999975432211
Q ss_pred HHHHHHHHHhcCCeEEEecc
Q 030524 134 IEEGEAKSRELNVMFIETSA 153 (175)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~s~ 153 (175)
...........|++++.+|.
T Consensus 198 ~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 198 KIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHHHHBTTBCCCCCCC-
T ss_pred HHHHHHHHHHcCCcEEecCC
Confidence 11222223445777777774
No 214
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.07 E-value=2.4e-10 Score=85.36 Aligned_cols=96 Identities=19% Similarity=0.320 Sum_probs=72.8
Q ss_pred CcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHH----HHH
Q 030524 67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEA----KSR 142 (175)
Q Consensus 67 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~----~~~ 142 (175)
..+.|...++.+.+.+|++++|+|++++. ..|...+.... .+.|+++|+||+|+.+.. ......++ .++
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-~~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-GNNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-SSSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-CCCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence 45788999999999999999999999863 34444555444 378999999999986433 33333333 356
Q ss_pred hcCC---eEEEeccCCCCCHHHHHHHHHHH
Q 030524 143 ELNV---MFIETSAKAGFNIKLCCHTLNSL 169 (175)
Q Consensus 143 ~~~~---~~~~~s~~~~~~v~~~f~~l~~~ 169 (175)
..++ .++.+||++|.|++++++.+.+.
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 6777 79999999999999999998764
No 215
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.03 E-value=1e-10 Score=90.29 Aligned_cols=151 Identities=19% Similarity=0.179 Sum_probs=83.1
Q ss_pred CceeEEEECCCCCCHHHHHHHHh------cCCCC----Cccccc-----------ceeeEEEEEEE-------------E
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFM------YDKFD----NTYQAT-----------IGIDFLSKTMY-------------L 53 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~------~~~~~----~~~~~~-----------~~~~~~~~~~~-------------~ 53 (175)
.+..|+++|++|+||||+++.|. +.... +.+.+. .+++.+..... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998 32210 001110 01222211000 0
Q ss_pred CCeEEEEEEEeCCCcccccc-ccc---cc--ccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcE-EEEEeCCCC
Q 030524 54 EDRTVRLQLWDTAGQERFRS-LIP---SY--IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVII-VLVGNKTDL 126 (175)
Q Consensus 54 ~~~~~~~~i~D~~G~~~~~~-~~~---~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiv~nk~D~ 126 (175)
....+.+.|+||||...... .+. .. +..+|.+++|+|+....... .....+.. .+|+ ++|+||+|.
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~----~~~i~gvVlNK~D~ 252 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKD----KVDVASVIVTKLDG 252 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHH----HHCCCCEEEECTTS
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHh----hcCceEEEEeCCcc
Confidence 00235689999999643211 111 11 23789999999998653211 11222222 1554 778899997
Q ss_pred CCCCCCCHHHHHHHHHhcCCeE------------------EEeccCCCCC-HHHHHHHHHHH
Q 030524 127 VEKRQVSIEEGEAKSRELNVMF------------------IETSAKAGFN-IKLCCHTLNSL 169 (175)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~------------------~~~s~~~~~~-v~~~f~~l~~~ 169 (175)
.... . .........++|+ ..+|+..|.| +.++++++.+.
T Consensus 253 ~~~~--g--~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 253 HAKG--G--GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCCC--T--HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccch--H--HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 5321 1 1222333444443 3468888888 88888887654
No 216
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.02 E-value=2.1e-11 Score=91.12 Aligned_cols=138 Identities=15% Similarity=0.165 Sum_probs=77.4
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcC------CCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcccccc--------c
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYD------KFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------L 74 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~ 74 (175)
..+|+++|.+|+|||||+|+|++. .......+..+ ........+. .+.++||||-..... .
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT--~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~ 236 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTT--LDMIEIPLES---GATLYDTPGIINHHQMAHFVDARD 236 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSS--CEEEEEECST---TCEEEECCSCCCCSSGGGGSCTTT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeE--EeeEEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHH
Confidence 357999999999999999999975 22122222222 2222333333 279999999532211 1
Q ss_pred ccccc--cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEec
Q 030524 75 IPSYI--RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETS 152 (175)
Q Consensus 75 ~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~s 152 (175)
...++ +..+.++++++....-.+..+.. +......+.|+++++||.|..+.... ....+.+.++.+..+...+
T Consensus 237 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~p~~ 311 (369)
T 3ec1_A 237 LKIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLSPPS 311 (369)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBCSSC
T ss_pred HHHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccCCCC
Confidence 11222 56799999998742211111111 11112357899999999997643332 2334445556666544444
Q ss_pred cCCC
Q 030524 153 AKAG 156 (175)
Q Consensus 153 ~~~~ 156 (175)
+...
T Consensus 312 ~~~~ 315 (369)
T 3ec1_A 312 KRYA 315 (369)
T ss_dssp GGGT
T ss_pred chhh
Confidence 4433
No 217
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.93 E-value=5.1e-11 Score=88.93 Aligned_cols=131 Identities=14% Similarity=0.146 Sum_probs=70.8
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCC-----cccccceeeEEEEEEEECCeEEEEEEEeCCCccccccc--------c
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDN-----TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------I 75 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~ 75 (175)
..+|+++|.+|+|||||+|+|++..... ......+.+........+.. +.++||||-...... .
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 236 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSL 236 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHH
Confidence 3689999999999999999998853111 01111122222223333332 789999995332211 1
Q ss_pred ccc--ccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhcCCe
Q 030524 76 PSY--IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM 147 (175)
Q Consensus 76 ~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~ 147 (175)
..+ .+..+.++++++......+..+.. +......+.|+++++||.|..+... .....+.+.++.+..
T Consensus 237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~~~-~~~~~~~~~~~~g~~ 305 (368)
T 3h2y_A 237 KLITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHRTK-LEKADELYKNHAGDL 305 (368)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEE-HHHHHHHHHHHBTTT
T ss_pred HHhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCcccccccc-HHHHHHHHHHHhCCc
Confidence 111 256788888887632110111111 1111235789999999999764332 233334445555554
No 218
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.92 E-value=1.3e-09 Score=78.54 Aligned_cols=100 Identities=9% Similarity=0.081 Sum_probs=68.9
Q ss_pred EEeCCCcc-cccccccccccCCcEEEEEEECCChhhHHh--HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHH
Q 030524 62 LWDTAGQE-RFRSLIPSYIRDSSVAVVVYDVASRQSFLN--TSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGE 138 (175)
Q Consensus 62 i~D~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~ 138 (175)
+-..|||. +....+...+.++|+++.|+|+.++.+... +.+++ .++|.++++||+|+.+... .....
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~~--~~~~~ 72 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAAV--TQQWK 72 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHHH--HHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHHH--HHHHH
Confidence 44578875 444566677899999999999999876653 33332 4789999999999865211 12223
Q ss_pred HHHHhcCCeEEEeccCCCCCHHHHHHHHHHHHh
Q 030524 139 AKSRELNVMFIETSAKAGFNIKLCCHTLNSLIT 171 (175)
Q Consensus 139 ~~~~~~~~~~~~~s~~~~~~v~~~f~~l~~~~~ 171 (175)
.+....+++++.+|+.++.|+.+++..+.+.+.
T Consensus 73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 334455789999999999999999998877654
No 219
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.92 E-value=5.3e-09 Score=74.89 Aligned_cols=137 Identities=12% Similarity=0.159 Sum_probs=68.7
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCCcc-------cccceeeEEEEEEEEC--CeEEEEEEEeCCCcccccc------
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTY-------QATIGIDFLSKTMYLE--DRTVRLQLWDTAGQERFRS------ 73 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~------ 73 (175)
.++++++|+.|+|||||++.+++...+... ................ +-...+.++|++|......
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 478999999999999999999874322110 0000000011111111 2123678999998432110
Q ss_pred cc----------------------cccccCCcEEEEEEECCChhhHHhH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 030524 74 LI----------------------PSYIRDSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130 (175)
Q Consensus 74 ~~----------------------~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~ 130 (175)
.. +-.+..+++.++++|-... ++..+ ...+..+. .. ++++++++|+|.....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~-gL~~lD~~~l~~L~---~~-~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGH-SLRPLDLEFMKHLS---KV-VNIIPVIAKADTMTLE 156 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSS-SCCHHHHHHHHHHH---TT-SEEEEEETTGGGSCHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCC-cCCHHHHHHHHHHH---hc-CcEEEEEeccccCCHH
Confidence 00 0112346888999885411 12222 22222222 23 8999999999975432
Q ss_pred CC--CHHHHHHHHHhcCCeEEE
Q 030524 131 QV--SIEEGEAKSRELNVMFIE 150 (175)
Q Consensus 131 ~~--~~~~~~~~~~~~~~~~~~ 150 (175)
+. ...........+++.+++
T Consensus 157 e~~~~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 157 EKSEFKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHHHHcCccccC
Confidence 21 122233344556666554
No 220
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.92 E-value=6.3e-10 Score=83.09 Aligned_cols=97 Identities=22% Similarity=0.272 Sum_probs=71.6
Q ss_pred CcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHH----HHH
Q 030524 67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEA----KSR 142 (175)
Q Consensus 67 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~----~~~ 142 (175)
.++.|...+++++..++++++|+|++++.+ .|...+.... .+.|+++|+||+|+.+.. ......++ .++
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-~~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-ADNPILLVGNKADLLPRS-VKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-TTSCEEEEEECGGGSCTT-CCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-CCCCEEEEEEChhcCCCc-cCHHHHHHHHHHHHH
Confidence 478899999999999999999999998763 2333344333 378999999999986532 23333333 355
Q ss_pred hcCC---eEEEeccCCCCCHHHHHHHHHHHH
Q 030524 143 ELNV---MFIETSAKAGFNIKLCCHTLNSLI 170 (175)
Q Consensus 143 ~~~~---~~~~~s~~~~~~v~~~f~~l~~~~ 170 (175)
..++ .++.+||++|.|++++++.+.+..
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 6676 789999999999999999987643
No 221
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.88 E-value=3.2e-08 Score=74.72 Aligned_cols=156 Identities=13% Similarity=0.097 Sum_probs=81.3
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCCCCCcc-cccceeeE--EEEEEEECCeEEEEEEEeCCCccccccccccc-----cc
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTY-QATIGIDF--LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY-----IR 80 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~-----~~ 80 (175)
...++++|++|+|||||+|.+.+...+... ....+.+. ........ ..-.+.++|++|..........+ +.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~-~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecccc-ccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 357999999999999999999985332211 11111110 01111111 11147899999854221111111 23
Q ss_pred CCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC-------CCCCCCHHHH----HHHH----HhcC
Q 030524 81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV-------EKRQVSIEEG----EAKS----RELN 145 (175)
Q Consensus 81 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~-------~~~~~~~~~~----~~~~----~~~~ 145 (175)
..+..++ ++..... ..+..+-..... .+.|++++.||.|+. .-......+. +++. .+.+
T Consensus 148 ~~~~~~~-lS~G~~~---kqrv~la~aL~~--~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g 221 (413)
T 1tq4_A 148 EYDFFII-ISATRFK---KNDIDIAKAISM--MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG 221 (413)
T ss_dssp GCSEEEE-EESSCCC---HHHHHHHHHHHH--TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCeEE-eCCCCcc---HHHHHHHHHHHh--cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455554 7765211 111111111122 368999999999863 1112222332 2232 1222
Q ss_pred ---CeEEEecc--CCCCCHHHHHHHHHHHHh
Q 030524 146 ---VMFIETSA--KAGFNIKLCCHTLNSLIT 171 (175)
Q Consensus 146 ---~~~~~~s~--~~~~~v~~~f~~l~~~~~ 171 (175)
...+.+|+ ..+.|++++.+.+.+.+-
T Consensus 222 ~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp 252 (413)
T 1tq4_A 222 IAEPPIFLLSNKNVCHYDFPVLMDKLISDLP 252 (413)
T ss_dssp CSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred CCCCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence 36788899 556679999998876653
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.68 E-value=2e-08 Score=72.32 Aligned_cols=57 Identities=21% Similarity=0.318 Sum_probs=35.4
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcCCCC-CcccccceeeEEEEEEEECCeEEEEEEEeCCCc
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 68 (175)
...++|+++|.||+|||||+|+|.+.... ....+..+.+. ..+..+. .+.++||||.
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtpG~ 175 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQ--QWVKVGK---ELELLDTPGI 175 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEEETT---TEEEEECCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeee--EEEEeCC---CEEEEECcCc
Confidence 35689999999999999999999986532 22222222121 1222332 4789999995
No 223
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.65 E-value=1e-08 Score=73.04 Aligned_cols=57 Identities=23% Similarity=0.315 Sum_probs=34.9
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCccc
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 70 (175)
++++++|.+|+|||||+|+|.+...... .++.+.+.....+..+. .+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 5999999999999999999998664321 12222222222222222 579999999643
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.56 E-value=3.5e-08 Score=74.92 Aligned_cols=141 Identities=17% Similarity=0.161 Sum_probs=77.5
Q ss_pred CceeEEEECCCCCCHHHHHHHHhc------CCC----CCcccc-----------cceeeEEEEEEEEC------------
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMY------DKF----DNTYQA-----------TIGIDFLSKTMYLE------------ 54 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~------~~~----~~~~~~-----------~~~~~~~~~~~~~~------------ 54 (175)
.+..|+++|++|+||||++..|.. ... .+.+.+ ..+++.+......+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 367899999999999999998863 111 001111 11111111000000
Q ss_pred -CeEEEEEEEeCCCcccccc-c---cc--ccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524 55 -DRTVRLQLWDTAGQERFRS-L---IP--SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (175)
Q Consensus 55 -~~~~~~~i~D~~G~~~~~~-~---~~--~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~ 127 (175)
...+.+.++||+|...... . .. .....+|.+++|+|+...... ......+... -.+..+|+||.|..
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a---~~~a~~f~~~---~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA---YNQALAFKEA---TPIGSIIVTKLDGS 252 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHHS---CTTEEEEEECCSSC
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH---HHHHHHHHhh---CCCeEEEEECCCCc
Confidence 0125789999999432111 1 11 113367999999998764322 2222333322 23456778999963
Q ss_pred CCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHH
Q 030524 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160 (175)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~ 160 (175)
. ....+.......++|+..++. |++++
T Consensus 253 ~----~gG~~ls~~~~~g~PI~fig~--Ge~vd 279 (443)
T 3dm5_A 253 A----KGGGALSAVAATGAPIKFIGT--GEKID 279 (443)
T ss_dssp S----SHHHHHHHHHTTCCCEEEEEC--SSSTT
T ss_pred c----cccHHHHHHHHHCCCEEEEEc--CCChH
Confidence 2 233455666678888887765 66554
No 225
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.46 E-value=6.7e-07 Score=68.03 Aligned_cols=84 Identities=17% Similarity=0.095 Sum_probs=48.2
Q ss_pred EEEEEEEeCCCcccccc-c---cc--ccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCC-c-EEEEEeCCCCCC
Q 030524 57 TVRLQLWDTAGQERFRS-L---IP--SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDV-I-IVLVGNKTDLVE 128 (175)
Q Consensus 57 ~~~~~i~D~~G~~~~~~-~---~~--~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~-~iiv~nk~D~~~ 128 (175)
.+.+.++||||...... . .. ..+..+|.+++|.|+.... ........+. ... | ..+|+||+|...
T Consensus 180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~----~~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGIQAKAFK----EAVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHHHHHHHH----TTSCSCEEEEEECSSSCS
T ss_pred CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHHHHHHHh----hcccCCeEEEEeCCCCcc
Confidence 35689999999543211 1 11 1123689999999986543 2222222221 235 5 788899999632
Q ss_pred CCCCCHHHHHHHHHhcCCeEEEe
Q 030524 129 KRQVSIEEGEAKSRELNVMFIET 151 (175)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~ 151 (175)
. ...........+.++..+
T Consensus 253 ~----~g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 253 K----GGGALSAVAETKAPIKFI 271 (432)
T ss_dssp T----THHHHHHHHHSSCCEEEE
T ss_pred c----hHHHHHHHHHHCCCEEEe
Confidence 1 123444666677776655
No 226
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.45 E-value=7.1e-08 Score=68.74 Aligned_cols=93 Identities=14% Similarity=0.057 Sum_probs=61.3
Q ss_pred CCCcccc-cccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHh
Q 030524 65 TAGQERF-RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE 143 (175)
Q Consensus 65 ~~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~ 143 (175)
.|||... ...+...+.++|+++.|+|+.+|.+..... +. +. ++|.++++||+|+.+... ......+...
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-ll-----~k~~iivlNK~DL~~~~~--~~~~~~~~~~ 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-FS-----RKETIILLNKVDIADEKT--TKKWVEFFKK 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-CT-----TSEEEEEEECGGGSCHHH--HHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-hc-----CCCcEEEEECccCCCHHH--HHHHHHHHHH
Confidence 3676532 235566789999999999999886654311 11 11 689999999999865311 1222334445
Q ss_pred cCCeEEEeccCCCCCHHHHHHHHHH
Q 030524 144 LNVMFIETSAKAGFNIKLCCHTLNS 168 (175)
Q Consensus 144 ~~~~~~~~s~~~~~~v~~~f~~l~~ 168 (175)
.++++ .+|+.++.|+++++..+.+
T Consensus 74 ~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 74 QGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred cCCeE-EEECCCCcCHHHHHHHHHH
Confidence 67888 9999999999999887644
No 227
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.41 E-value=3e-07 Score=72.33 Aligned_cols=62 Identities=15% Similarity=0.029 Sum_probs=37.6
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccc-cceeeEEEEEE--EE-CCeEEEEEEEeCCCcc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA-TIGIDFLSKTM--YL-EDRTVRLQLWDTAGQE 69 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~--~~-~~~~~~~~i~D~~G~~ 69 (175)
...+|+++|.||+|||||+|+|++....-.... +.+.+.....+ .. ......+.++||||-.
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 458899999999999999999998753211111 11111111111 11 1122468999999954
No 228
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.34 E-value=3e-07 Score=69.82 Aligned_cols=91 Identities=14% Similarity=0.081 Sum_probs=54.3
Q ss_pred EEEEEEEeCCCccc--ccc-c---ccc--cccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 030524 57 TVRLQLWDTAGQER--FRS-L---IPS--YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (175)
Q Consensus 57 ~~~~~i~D~~G~~~--~~~-~---~~~--~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~ 128 (175)
.+.+.++||||... ... . ... ...+.|.+++|+|+...... ......+.... .+..+|+||.|..
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a---~~~a~~f~~~~---~~~gVIlTKlD~~- 251 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKA---YDLASRFHQAS---PIGSVIITKMDGT- 251 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGG---HHHHHHHHHHC---SSEEEEEECGGGC-
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHH---HHHHHHHhccc---CCcEEEEeccccc-
Confidence 35688999999533 111 1 111 12256899999998765322 22223333222 3456788999953
Q ss_pred CCCCCHHHHHHHHHhcCCeEEEeccCCCCCH
Q 030524 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159 (175)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 159 (175)
.....+.......+.|+..++. |+++
T Consensus 252 ---a~~G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 252 ---AKGGGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp ---SCHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred ---ccchHHHHHHHHHCCCEEEEEC--CCCh
Confidence 2334566667778999888875 6665
No 229
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.30 E-value=2.3e-07 Score=67.38 Aligned_cols=91 Identities=19% Similarity=0.172 Sum_probs=60.6
Q ss_pred cccccccccCCcEEEEEEECCChhhH-HhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC--CCHHHHHHHHHhcCCeE
Q 030524 72 RSLIPSYIRDSSVAVVVYDVASRQSF-LNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--VSIEEGEAKSRELNVMF 148 (175)
Q Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~--~~~~~~~~~~~~~~~~~ 148 (175)
..+.+..+.++|.+++|+|+.+|..- ..+.+++... ...++|.++|+||+|+.++.. .............|.+.
T Consensus 77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~---~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v 153 (307)
T 1t9h_A 77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLV---EANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDV 153 (307)
T ss_dssp CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHH---HTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCE
T ss_pred hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHH---HHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeE
Confidence 34556678899999999999877533 2334333222 225789999999999865422 01123333444568899
Q ss_pred EEeccCCCCCHHHHHHH
Q 030524 149 IETSAKAGFNIKLCCHT 165 (175)
Q Consensus 149 ~~~s~~~~~~v~~~f~~ 165 (175)
+.+|+.++.|+++++..
T Consensus 154 ~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 154 YLTSSKDQDSLADIIPH 170 (307)
T ss_dssp EECCHHHHTTCTTTGGG
T ss_pred EEEecCCCCCHHHHHhh
Confidence 99999999988876653
No 230
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.19 E-value=3.2e-06 Score=61.27 Aligned_cols=91 Identities=12% Similarity=0.037 Sum_probs=55.2
Q ss_pred EEEEEEeCCCccc--ccc-ccc-----ccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCc-EEEEEeCCCCCC
Q 030524 58 VRLQLWDTAGQER--FRS-LIP-----SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVE 128 (175)
Q Consensus 58 ~~~~i~D~~G~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nk~D~~~ 128 (175)
+.+.++||||... ... ++. .....+|.+++|.|.... +........+.. ..+ ..+++||.|...
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~----~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ----ASKIGTIIITKMDGTA 253 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence 5689999999654 211 221 124478999999998643 222222222222 245 667889999532
Q ss_pred CCCCCHHHHHHHHHhcCCeEEEeccCCCCCHHH
Q 030524 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKL 161 (175)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~ 161 (175)
........+...+.|+..++ .|+++++
T Consensus 254 ----~~g~~~~~~~~~~~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 254 ----KGGGALSAVAATGATIKFIG--TGEKIDE 280 (297)
T ss_dssp ----THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred ----chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence 23455667778888887776 4666543
No 231
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.19 E-value=3.1e-06 Score=67.13 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.4
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
..|+|+|+.|||||||++.+.+-.
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 359999999999999999998864
No 232
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.14 E-value=8.1e-08 Score=73.93 Aligned_cols=101 Identities=12% Similarity=0.082 Sum_probs=58.4
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCcccccceeeEEEEEEEECCeEEEEEEEeCCCcc--cccccc--------cc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE--RFRSLI--------PS 77 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--~~~~~~--------~~ 77 (175)
.+..|+++|.+|+||||+.++|...... ...++..+..........+......+||..|++ +.+..+ ..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999998754211 111111111000000011111234678988873 233333 55
Q ss_pred cccCCcEEEEEEECCChhhHHhHHHHHHHHHHh
Q 030524 78 YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE 110 (175)
Q Consensus 78 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~ 110 (175)
++...++.++|+|.++. +.+....|+..+...
T Consensus 117 ~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp HHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred HHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 66678888999999987 455555665555443
No 233
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.03 E-value=1.9e-05 Score=58.50 Aligned_cols=85 Identities=18% Similarity=0.182 Sum_probs=54.6
Q ss_pred cccCCcEEEEEEECCChh-hHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCC-HHHHHHHHHhcCCeEEEeccCC
Q 030524 78 YIRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS-IEEGEAKSRELNVMFIETSAKA 155 (175)
Q Consensus 78 ~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~ 155 (175)
.+.|+|.+++|.+. +|. +...+.+++..... .++|.++|+||+|+.++.... ...........|++++.+|+.+
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 46799999988765 464 33334444333322 367889999999986532100 1112222335688999999999
Q ss_pred CCCHHHHHHHH
Q 030524 156 GFNIKLCCHTL 166 (175)
Q Consensus 156 ~~~v~~~f~~l 166 (175)
+.|++++...+
T Consensus 203 ~~gl~~L~~~~ 213 (358)
T 2rcn_A 203 QDGLKPLEEAL 213 (358)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHHhc
Confidence 99999876643
No 234
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.91 E-value=1.7e-05 Score=60.45 Aligned_cols=25 Identities=12% Similarity=0.118 Sum_probs=21.7
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcC
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
+..-|.|+|++++|||+|+|+|++.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhh
Confidence 4566889999999999999999863
No 235
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.82 E-value=1.3e-05 Score=53.85 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=22.9
Q ss_pred CCCCceeEEEECCCCCCHHHHHHHHhcC
Q 030524 5 SALAKYKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
.-...-.|+++|++||||||+++.+.+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3344567999999999999999999875
No 236
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.72 E-value=1.9e-05 Score=52.84 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=20.4
Q ss_pred eeEEEECCCCCCHHHHHHHHhcC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
--++++||+|||||||++.|.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999998874
No 237
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.71 E-value=2.1e-05 Score=52.64 Aligned_cols=22 Identities=27% Similarity=0.664 Sum_probs=19.9
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~ 32 (175)
+++++|++|+|||||++.+.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988764
No 238
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.67 E-value=3.2e-05 Score=52.55 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=22.6
Q ss_pred CCCCceeEEEECCCCCCHHHHHHHHhcC
Q 030524 5 SALAKYKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 5 ~~~~~~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
+....--|+|+||+|+|||||++.|.+.
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3344557899999999999999999864
No 239
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.67 E-value=2.5e-05 Score=53.14 Aligned_cols=23 Identities=17% Similarity=0.509 Sum_probs=20.3
Q ss_pred eeEEEECCCCCCHHHHHHHHhcC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
-.++|+||+|+|||||++.+.+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999998763
No 240
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.60 E-value=3.6e-05 Score=52.63 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=21.2
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhc
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
......|+++|+.|||||||++.+.+
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 34556899999999999999998766
No 241
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.59 E-value=3.7e-05 Score=52.24 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=20.3
Q ss_pred eeEEEECCCCCCHHHHHHHHhcC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
--++++|++|||||||++.+.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 35899999999999999998874
No 242
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.58 E-value=4.6e-05 Score=51.78 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=22.2
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCC
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
....|+++|++||||||+++.|.+..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34578999999999999999987754
No 243
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.58 E-value=4.5e-05 Score=51.81 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=20.7
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhc
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
...-.|+|+|++||||||+++.|.+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3446799999999999999998865
No 244
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.57 E-value=3.9e-05 Score=51.54 Aligned_cols=22 Identities=18% Similarity=0.551 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~ 32 (175)
-++|+||.|+|||||++.+.+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3789999999999999998864
No 245
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.54 E-value=6.8e-05 Score=50.27 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=23.4
Q ss_pred CCCCCceeEEEECCCCCCHHHHHHHHhcC
Q 030524 4 VSALAKYKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 4 ~~~~~~~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
|+......|+++|++||||||+.+.|...
T Consensus 5 ~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 5 MEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp -CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 44455678999999999999999988654
No 246
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.51 E-value=5.2e-05 Score=50.29 Aligned_cols=20 Identities=20% Similarity=0.532 Sum_probs=17.6
Q ss_pred eEEEECCCCCCHHHHHHHHh
Q 030524 11 KLVFLGDQSVGKTSIITRFM 30 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~ 30 (175)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999644
No 247
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.51 E-value=7.7e-05 Score=49.68 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=21.2
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhc
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
.....|+++|++||||||+.+.|..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 3456799999999999999998864
No 248
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.50 E-value=5.8e-05 Score=52.23 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=20.9
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
--++|+||.|||||||++.+.+..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 468899999999999999988753
No 249
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.50 E-value=5.8e-05 Score=51.67 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.0
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
--|+++||+|||||||++.|....
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 458899999999999999998754
No 250
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.50 E-value=6.4e-05 Score=51.40 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=21.7
Q ss_pred CCCCCCceeEEEECCCCCCHHHHHHHHhc
Q 030524 3 PVSALAKYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 3 ~~~~~~~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
+|+-.+...|++.|++||||||+.+.|..
T Consensus 3 ~m~~~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 3 HMAARRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp ----CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred cccccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 44434557899999999999999998864
No 251
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.49 E-value=6.6e-05 Score=50.58 Aligned_cols=21 Identities=19% Similarity=0.586 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 030524 12 LVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 12 i~l~G~~~~GKSsli~~l~~~ 32 (175)
|+|+||+||||+||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999864
No 252
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.49 E-value=5.8e-05 Score=52.13 Aligned_cols=24 Identities=33% Similarity=0.647 Sum_probs=20.9
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
-.++|+||+|+|||||++.+.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 458999999999999999988743
No 253
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.49 E-value=0.00041 Score=52.84 Aligned_cols=84 Identities=14% Similarity=0.023 Sum_probs=45.3
Q ss_pred EEEEEEEeCCCcccccc-ccc-----ccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCC
Q 030524 57 TVRLQLWDTAGQERFRS-LIP-----SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEK 129 (175)
Q Consensus 57 ~~~~~i~D~~G~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nk~D~~~~ 129 (175)
.+.+.|+||||...... ... ..+..++.+++|.|+.... ........+.. .++ .-+|+||.|...
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~---~~~~~~~~f~~----~l~i~gvVlnK~D~~~- 254 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ---DAANTAKAFNE----ALPLTGVVLTKVDGDA- 254 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT---THHHHHHHHHH----HSCCCCEEEECTTSSS-
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH---HHHHHHHHHhc----cCCCeEEEEecCCCCc-
Confidence 35689999999543321 111 1244789999999987542 22222222322 233 235779999632
Q ss_pred CCCCHHHHHHHHHhcCCeEEEe
Q 030524 130 RQVSIEEGEAKSRELNVMFIET 151 (175)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~ 151 (175)
+ . ..+.......+.|+..+
T Consensus 255 ~-~--g~~l~i~~~~~~Pi~~i 273 (433)
T 2xxa_A 255 R-G--GAALSIRHITGKPIKFL 273 (433)
T ss_dssp C-C--THHHHHHHHHCCCEEEE
T ss_pred c-H--HHHHHHHHHHCCCeEEE
Confidence 2 1 23445555566654433
No 254
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.48 E-value=6.1e-05 Score=51.47 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=20.5
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
--++++|+.|+|||||++.+.+-.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 357899999999999999987743
No 255
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.47 E-value=7.4e-05 Score=49.56 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=18.9
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q 030524 11 KLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~ 31 (175)
+|+++|++||||||+...|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998754
No 256
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.47 E-value=0.00027 Score=51.22 Aligned_cols=21 Identities=33% Similarity=0.686 Sum_probs=19.4
Q ss_pred eeEEEECCCCCCHHHHHHHHh
Q 030524 10 YKLVFLGDQSVGKTSIITRFM 30 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~ 30 (175)
-.++++|++|+|||||+|.+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999998
No 257
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.45 E-value=7.2e-05 Score=50.99 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=20.7
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcC
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
..-|+|+|++||||||+++.|...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 356899999999999999998764
No 258
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.44 E-value=8.4e-05 Score=50.82 Aligned_cols=24 Identities=13% Similarity=0.268 Sum_probs=21.0
Q ss_pred CceeEEEECCCCCCHHHHHHHHhc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
....|+|+|++|||||||++.+.+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998765
No 259
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.44 E-value=0.0001 Score=48.88 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=20.0
Q ss_pred eeEEEECCCCCCHHHHHHHHhc
Q 030524 10 YKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~ 31 (175)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999886
No 260
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.43 E-value=8e-05 Score=49.16 Aligned_cols=23 Identities=17% Similarity=0.366 Sum_probs=20.2
Q ss_pred eeEEEECCCCCCHHHHHHHHhcC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
..|+++|++||||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999988763
No 261
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.43 E-value=0.00012 Score=48.43 Aligned_cols=23 Identities=17% Similarity=0.314 Sum_probs=20.0
Q ss_pred ceeEEEECCCCCCHHHHHHHHhc
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
.-.|+++|++||||||+.+.|.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999998764
No 262
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.43 E-value=9.2e-05 Score=48.73 Aligned_cols=20 Identities=15% Similarity=0.250 Sum_probs=18.4
Q ss_pred eeEEEECCCCCCHHHHHHHH
Q 030524 10 YKLVFLGDQSVGKTSIITRF 29 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l 29 (175)
..|+++|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999998
No 263
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.41 E-value=0.00012 Score=49.04 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=20.6
Q ss_pred CceeEEEECCCCCCHHHHHHHHhc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
....|++.|++||||||+.+.|..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999998764
No 264
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.39 E-value=0.0001 Score=54.59 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~~ 34 (175)
.++++|++|+|||||+|.|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 689999999999999999998653
No 265
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.38 E-value=9.7e-05 Score=48.60 Aligned_cols=22 Identities=9% Similarity=0.270 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~ 32 (175)
.|++.|++||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999988653
No 266
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.38 E-value=0.0001 Score=49.52 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=19.1
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q 030524 11 KLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~ 31 (175)
.++++|++|+||||+++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999875
No 267
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.37 E-value=0.00011 Score=51.40 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
.++++|+.|||||||++.+.+-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999888753
No 268
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.35 E-value=0.00016 Score=49.01 Aligned_cols=26 Identities=15% Similarity=0.307 Sum_probs=22.1
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhc
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
...+..|+|+|++||||||+.+.|..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999998864
No 269
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.34 E-value=0.00014 Score=51.06 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=20.2
Q ss_pred ceeEEEECCCCCCHHHHHHHHh
Q 030524 9 KYKLVFLGDQSVGKTSIITRFM 30 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~ 30 (175)
.-.|+|+|++||||||+++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999988
No 270
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.32 E-value=0.00014 Score=49.85 Aligned_cols=21 Identities=19% Similarity=0.389 Sum_probs=19.0
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q 030524 11 KLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~ 31 (175)
+|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998854
No 271
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.32 E-value=0.00015 Score=49.03 Aligned_cols=31 Identities=13% Similarity=0.103 Sum_probs=22.2
Q ss_pred CCCCCCCCceeEEEECCCCCCHHHHHHHHhcC
Q 030524 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 1 ~~~~~~~~~~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
|..++.. +..|+|+|++||||||+.+.|...
T Consensus 1 ~~~~~~~-~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 1 MGHEAKH-PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp -----CC-CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CCCcccC-ceEEEEECCCCCCHHHHHHHHHHC
Confidence 3444443 478999999999999999988764
No 272
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.30 E-value=0.00025 Score=48.04 Aligned_cols=25 Identities=16% Similarity=0.213 Sum_probs=21.1
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhc
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
.....|+|.|++||||||+.+.|..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998864
No 273
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.30 E-value=0.00014 Score=47.60 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=20.9
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
-.++++|+.|+|||||++.+.+..
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 358899999999999999988754
No 274
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.30 E-value=0.00015 Score=49.72 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=19.1
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q 030524 11 KLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~ 31 (175)
+|+|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998854
No 275
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.30 E-value=0.00015 Score=49.03 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~ 32 (175)
.++++|+.|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999988764
No 276
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.28 E-value=0.00016 Score=49.81 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=19.9
Q ss_pred eeEEEECCCCCCHHHHHHHHhc
Q 030524 10 YKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~ 31 (175)
..|+++|++||||||+.+.|.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998765
No 277
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.28 E-value=0.00015 Score=49.19 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=19.7
Q ss_pred eeEEEECCCCCCHHHHHHHHhc
Q 030524 10 YKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~ 31 (175)
..|+|+|++||||||+.+.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998865
No 278
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.27 E-value=0.00014 Score=50.47 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
.++++|+.|+|||||++.+.+-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999887753
No 279
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.27 E-value=0.0002 Score=48.00 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.1
Q ss_pred ceeEEEECCCCCCHHHHHHHHhc
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
+..|++.|++||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998754
No 280
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.27 E-value=0.00017 Score=50.57 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
.++++|+.|+|||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999988753
No 281
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.26 E-value=0.00015 Score=51.46 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=20.1
Q ss_pred eeEEEECCCCCCHHHHHHHHhcC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
=.++++|++|||||||++.+.+-
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 35899999999999999988763
No 282
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.26 E-value=0.00018 Score=48.83 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=19.6
Q ss_pred eeEEEECCCCCCHHHHHHHHhc
Q 030524 10 YKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~ 31 (175)
-.|+++|++||||||+...|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 283
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.26 E-value=0.00022 Score=47.28 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.1
Q ss_pred eeEEEECCCCCCHHHHHHHHhcC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
..|++.|++||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999998763
No 284
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.26 E-value=0.00019 Score=48.03 Aligned_cols=22 Identities=27% Similarity=0.178 Sum_probs=19.6
Q ss_pred eeEEEECCCCCCHHHHHHHHhc
Q 030524 10 YKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~ 31 (175)
..|++.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998754
No 285
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.26 E-value=0.00023 Score=47.54 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.2
Q ss_pred ceeEEEECCCCCCHHHHHHHHhc
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
...|+++|++||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 286
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.25 E-value=0.00018 Score=49.24 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=19.4
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~ 32 (175)
.|+++|+|||||+|...+|...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999987653
No 287
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.25 E-value=0.00018 Score=49.54 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
.++++|+.|+|||||++.+.+-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988753
No 288
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.25 E-value=0.00022 Score=50.02 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=21.4
Q ss_pred CceeEEEECCCCCCHHHHHHHHhc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
.+.+|+|.|++||||||+...|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998864
No 289
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.25 E-value=0.00029 Score=48.64 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=18.0
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~ 32 (175)
-|+++|+|||||+|....|...
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999987653
No 290
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.25 E-value=0.00019 Score=50.22 Aligned_cols=23 Identities=17% Similarity=0.465 Sum_probs=20.3
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
.++++|+.|+|||||++.+.+-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999988753
No 291
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.25 E-value=0.00021 Score=51.76 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=21.0
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
-.++++|++|+|||||+|.+.+..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 357899999999999999998754
No 292
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.25 E-value=0.0002 Score=49.29 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=20.3
Q ss_pred ceeEEEECCCCCCHHHHHHHHhc
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
...|+|+|++||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998754
No 293
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.25 E-value=0.00022 Score=48.55 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=20.1
Q ss_pred eeEEEECCCCCCHHHHHHHHhc
Q 030524 10 YKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~ 31 (175)
+.|+++|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999876
No 294
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.25 E-value=0.00017 Score=52.31 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.6
Q ss_pred eeEEEECCCCCCHHHHHHHHhc
Q 030524 10 YKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~ 31 (175)
=.++|+|++|+|||||++.+.+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhh
Confidence 4689999999999999998875
No 295
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.25 E-value=0.00018 Score=51.49 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
.++++|+.|||||||++.+.+-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999988753
No 296
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.24 E-value=0.00018 Score=51.06 Aligned_cols=23 Identities=13% Similarity=0.377 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
.++++|+.|+|||||++.+.+-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988753
No 297
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.24 E-value=0.00016 Score=48.17 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=20.4
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcC
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
.-.++++|++|+|||||+..+.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999988753
No 298
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.23 E-value=0.00019 Score=51.10 Aligned_cols=23 Identities=13% Similarity=0.290 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
.++++|+.|+|||||++.+.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999988753
No 299
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.23 E-value=5.3e-05 Score=55.05 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=20.4
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
-.++++|++|+|||||+|.+.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 478999999999999999998753
No 300
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.22 E-value=0.0002 Score=47.70 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.2
Q ss_pred eeEEEECCCCCCHHHHHHHHhcC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
..++++|++|+|||||+++++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 35789999999999999998864
No 301
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.22 E-value=0.00022 Score=47.83 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=20.2
Q ss_pred ceeEEEECCCCCCHHHHHHHHhc
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
+..|+++|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998865
No 302
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.22 E-value=0.0002 Score=50.74 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=20.3
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
.++++|+.|+|||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999988754
No 303
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.21 E-value=0.0002 Score=48.64 Aligned_cols=25 Identities=12% Similarity=0.086 Sum_probs=21.0
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcC
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
..-.|+++|++|+||||+.+.|.+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999987653
No 304
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.21 E-value=0.00029 Score=47.94 Aligned_cols=23 Identities=26% Similarity=0.216 Sum_probs=20.5
Q ss_pred ceeEEEECCCCCCHHHHHHHHhc
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
...|++.|++||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999998865
No 305
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.21 E-value=0.00024 Score=50.00 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=21.4
Q ss_pred CCCCCceeEEEECCCCCCHHHHHHHHhc
Q 030524 4 VSALAKYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 4 ~~~~~~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
++....+.|+|.|++||||||+.+.|..
T Consensus 17 ~~~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 17 PNGGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp ----CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3444568899999999999999998754
No 306
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.21 E-value=0.00011 Score=50.95 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=15.2
Q ss_pred eeEEEECCCCCCHHHHHHHHh-cC
Q 030524 10 YKLVFLGDQSVGKTSIITRFM-YD 32 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~-~~ 32 (175)
--++|+|++|||||||++.|. +.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 358899999999999999998 54
No 307
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.21 E-value=0.00021 Score=49.67 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.3
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
.++++|+.|+|||||++.+.+-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999988754
No 308
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.20 E-value=0.00019 Score=48.74 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=19.8
Q ss_pred eeEEEECCCCCCHHHHHHHHhc
Q 030524 10 YKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~ 31 (175)
.+|+++|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999998875
No 309
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.20 E-value=0.00022 Score=50.17 Aligned_cols=23 Identities=13% Similarity=0.161 Sum_probs=20.3
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
.++++|+.|+|||||++.+.+-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999988753
No 310
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.20 E-value=0.00032 Score=49.22 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
.++++|+.|+|||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999988753
No 311
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.20 E-value=0.00025 Score=51.02 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=21.6
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhc
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
..+.-|+++|++||||||+...|..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457799999999999999999864
No 312
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.19 E-value=0.00022 Score=50.70 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
.++++|+.|+|||||++.+.+-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 47899999999999999988753
No 313
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.19 E-value=0.0003 Score=51.25 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=21.8
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhc
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
....-|+|+|++|||||||++.+.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 4557899999999999999998766
No 314
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.19 E-value=0.00021 Score=47.82 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=18.9
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q 030524 11 KLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~ 31 (175)
.|+|.|++||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 315
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.19 E-value=0.00023 Score=48.08 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=19.1
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q 030524 11 KLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~ 31 (175)
.|++.|++||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999998865
No 316
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.18 E-value=0.00023 Score=50.40 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=20.3
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
.++++|+.|+|||||++.+.+-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999988753
No 317
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.18 E-value=0.00023 Score=49.90 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
.++++|+.|+|||||++.+.+-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999988753
No 318
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.17 E-value=0.00026 Score=47.24 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.6
Q ss_pred eeEEEECCCCCCHHHHHHHHhc
Q 030524 10 YKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~ 31 (175)
..|+++|++||||||+...|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998854
No 319
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.17 E-value=0.00024 Score=50.07 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
.++++|+.|+|||||++.+.+-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999988753
No 320
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.16 E-value=0.00024 Score=49.20 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.2
Q ss_pred ceeEEEECCCCCCHHHHHHHHhc
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
...|+|+|++||||||+.+.|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998864
No 321
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.16 E-value=0.00026 Score=50.22 Aligned_cols=23 Identities=17% Similarity=0.236 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
.++++|+.|+|||||++.+.+-.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57899999999999999988753
No 322
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.16 E-value=0.00035 Score=47.54 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=21.6
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcC
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
....|+++|++||||||+.+.|.+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999998764
No 323
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.15 E-value=0.00026 Score=49.92 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=19.9
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~ 32 (175)
.++++|+.|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998874
No 324
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.14 E-value=0.00036 Score=51.01 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=21.3
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhc
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
..++-|+++|++|||||||++.+.+
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999988743
No 325
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.14 E-value=0.00026 Score=50.54 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=20.3
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
.++|+|+.|+|||||++.+.+-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999988754
No 326
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.14 E-value=0.00035 Score=47.30 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=21.2
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcC
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
...|+|.|++||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999998764
No 327
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.14 E-value=0.00027 Score=49.31 Aligned_cols=20 Identities=25% Similarity=0.619 Sum_probs=18.3
Q ss_pred eEEEECCCCCCHHHHHHHHh
Q 030524 11 KLVFLGDQSVGKTSIITRFM 30 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~ 30 (175)
-++++|++|+|||||++.++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999887
No 328
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.14 E-value=0.00026 Score=48.75 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=20.6
Q ss_pred CceeEEEECCCCCCHHHHHHHHhc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
....|+|+|++||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998764
No 329
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.14 E-value=0.00028 Score=50.27 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~ 32 (175)
.++++|+.|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998875
No 330
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.13 E-value=0.0003 Score=50.47 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.3
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
.++++|+.|+|||||++.+.+-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999988753
No 331
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.13 E-value=0.00031 Score=47.81 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=21.0
Q ss_pred CceeEEEECCCCCCHHHHHHHHhc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
....|++.|++||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 356799999999999999998865
No 332
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.12 E-value=0.00028 Score=49.87 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.3
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
.++++|+.|+|||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999988754
No 333
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.12 E-value=0.00026 Score=48.48 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=19.0
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q 030524 11 KLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~ 31 (175)
+|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 334
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.12 E-value=0.00044 Score=46.21 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=20.9
Q ss_pred CceeEEEECCCCCCHHHHHHHHhc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
....|+++|++||||||+.+.|..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457799999999999999998765
No 335
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.11 E-value=0.00036 Score=48.89 Aligned_cols=24 Identities=17% Similarity=0.364 Sum_probs=21.0
Q ss_pred CceeEEEECCCCCCHHHHHHHHhc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
....|+|+|+.|||||||++.+.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998866
No 336
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.11 E-value=0.00018 Score=49.27 Aligned_cols=22 Identities=23% Similarity=0.164 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~ 32 (175)
.++++|+.|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998875
No 337
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.11 E-value=0.00029 Score=50.11 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
.++++|+.|+|||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999988753
No 338
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.10 E-value=0.00025 Score=48.88 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~ 32 (175)
-++++|++|+|||||++.+.+.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999873
No 339
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.10 E-value=0.00043 Score=49.89 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=21.3
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhc
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
..+..|+|+|++|||||||++.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4568899999999999999987654
No 340
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.08 E-value=0.00034 Score=46.99 Aligned_cols=23 Identities=13% Similarity=0.263 Sum_probs=20.1
Q ss_pred ceeEEEECCCCCCHHHHHHHHhc
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
...|+++|++||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998764
No 341
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.07 E-value=0.00037 Score=49.51 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
.++++|+.|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999988754
No 342
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.06 E-value=0.00031 Score=49.50 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=21.9
Q ss_pred CCCceeEEEECCCCCCHHHHHHHHhc
Q 030524 6 ALAKYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 6 ~~~~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
...+..|+++|++||||||+...|..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999998764
No 343
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.05 E-value=0.00032 Score=52.06 Aligned_cols=22 Identities=14% Similarity=0.296 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~ 32 (175)
.++++|++|||||||++.+++.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999998763
No 344
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.05 E-value=0.00014 Score=48.24 Aligned_cols=22 Identities=41% Similarity=0.558 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~ 32 (175)
.++|+|++|||||||++.+.+-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999988764
No 345
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.04 E-value=0.00043 Score=45.32 Aligned_cols=21 Identities=14% Similarity=0.301 Sum_probs=19.1
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q 030524 11 KLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~ 31 (175)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 346
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.04 E-value=0.00025 Score=51.54 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=20.6
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
=.++|+|+.|+|||||++.+.+-.
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CEEEEECCCCchHHHHHHHHHcCC
Confidence 368999999999999999887643
No 347
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.03 E-value=0.00044 Score=47.76 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=18.9
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q 030524 11 KLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~ 31 (175)
.|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998754
No 348
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.02 E-value=0.00039 Score=49.09 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=18.6
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q 030524 11 KLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~ 31 (175)
-|+++|++|||||||...|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998864
No 349
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.00 E-value=0.00034 Score=52.04 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=21.9
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCC
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
.-+++|+|++|+|||||++.+.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999988753
No 350
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.00 E-value=0.00024 Score=46.07 Aligned_cols=23 Identities=13% Similarity=0.401 Sum_probs=20.1
Q ss_pred eeEEEECCCCCCHHHHHHHHhcC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
-.++++|++|+|||+|++.+.+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999998764
No 351
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.00 E-value=0.00046 Score=45.68 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=19.5
Q ss_pred eeEEEECCCCCCHHHHHHHHhc
Q 030524 10 YKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~ 31 (175)
..+.++|++|||||||+.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999875
No 352
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.99 E-value=0.00041 Score=49.57 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~ 32 (175)
.++++||+|+|||+|++.+.+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3999999999999999998763
No 353
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.99 E-value=0.00044 Score=46.56 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=20.2
Q ss_pred ceeEEEECCCCCCHHHHHHHHhc
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
...|++.|++||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998865
No 354
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.98 E-value=0.00046 Score=46.37 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=18.9
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q 030524 11 KLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~ 31 (175)
-|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999998865
No 355
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.97 E-value=0.00045 Score=48.53 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~ 32 (175)
.++++|++|+|||||++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998764
No 356
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.97 E-value=0.00059 Score=46.31 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=20.8
Q ss_pred CceeEEEECCCCCCHHHHHHHHhc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
....|+++|++||||||+++.+.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998764
No 357
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.96 E-value=0.00052 Score=45.13 Aligned_cols=21 Identities=14% Similarity=0.341 Sum_probs=18.9
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q 030524 11 KLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~ 31 (175)
.|++.|++||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998754
No 358
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.96 E-value=0.00041 Score=51.43 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.3
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
-++++||.|+|||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999988754
No 359
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.96 E-value=0.00046 Score=51.52 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=20.3
Q ss_pred eeEEEECCCCCCHHHHHHHHhcC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
=.++++|++||||||+++.+.+.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999998763
No 360
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.95 E-value=0.0005 Score=45.82 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=18.9
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q 030524 11 KLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~ 31 (175)
.|+++|++||||||+...|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998754
No 361
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.95 E-value=0.0006 Score=50.14 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=19.6
Q ss_pred eeEEEECCCCCCHHHHHHHHhc
Q 030524 10 YKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~ 31 (175)
.-|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5689999999999999998765
No 362
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.95 E-value=0.0005 Score=46.02 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=18.9
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q 030524 11 KLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~ 31 (175)
.|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 363
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.95 E-value=0.00055 Score=49.72 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=21.5
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhc
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
.....|+|+|+.|||||||++.+.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3446799999999999999998776
No 364
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.95 E-value=0.0005 Score=50.95 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
.++++|+.|+|||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999988754
No 365
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.95 E-value=0.00068 Score=46.50 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=20.5
Q ss_pred ceeEEEECCCCCCHHHHHHHHhc
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
+..|+|.|++||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999998865
No 366
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.95 E-value=0.00055 Score=45.40 Aligned_cols=24 Identities=33% Similarity=0.558 Sum_probs=20.4
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcC
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
.-.+++.|++|+|||++++.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999988753
No 367
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.95 E-value=0.00041 Score=51.59 Aligned_cols=24 Identities=25% Similarity=0.474 Sum_probs=21.3
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
-.++++|++|||||||++.+.+-.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 478999999999999999988753
No 368
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.94 E-value=0.00045 Score=47.47 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.1
Q ss_pred ceeEEEECCCCCCHHHHHHHHhc
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
...|+|+|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998754
No 369
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.94 E-value=0.00048 Score=49.99 Aligned_cols=84 Identities=15% Similarity=0.067 Sum_probs=46.2
Q ss_pred EEEEEeCCCcccccc------------cccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 030524 59 RLQLWDTAGQERFRS------------LIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126 (175)
Q Consensus 59 ~~~i~D~~G~~~~~~------------~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~ 126 (175)
.+.+.|++|...... ..+......+.++++.|...... +...+..+.... +.. ++++||.|.
T Consensus 186 d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~---~~~~~~~~~~~~--~~t-~iivTh~d~ 259 (304)
T 1rj9_A 186 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN---GLEQAKKFHEAV--GLT-GVIVTKLDG 259 (304)
T ss_dssp SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH---HHHHHHHHHHHH--CCS-EEEEECTTS
T ss_pred CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH---HHHHHHHHHHHc--CCc-EEEEECCcc
Confidence 356889999432111 11123346788888999876532 222333333322 233 456799985
Q ss_pred CCCCCCCHHHHHHHHHhcCCeEEEec
Q 030524 127 VEKRQVSIEEGEAKSRELNVMFIETS 152 (175)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~s 152 (175)
.. + ...........+.|+..+.
T Consensus 260 ~a-~---gg~~l~i~~~~~~pi~~ig 281 (304)
T 1rj9_A 260 TA-K---GGVLIPIVRTLKVPIKFVG 281 (304)
T ss_dssp SC-C---CTTHHHHHHHHCCCEEEEE
T ss_pred cc-c---ccHHHHHHHHHCCCeEEEe
Confidence 32 1 1234456667788776664
No 370
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.94 E-value=0.00053 Score=50.96 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=20.1
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
-++++|+.|+|||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 47899999999999999888753
No 371
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.94 E-value=0.00043 Score=50.85 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.0
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
-.++++|++|||||||++.+.+-.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999988754
No 372
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.93 E-value=0.00052 Score=50.92 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
.++++|+.|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 47899999999999999988753
No 373
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.93 E-value=0.00048 Score=49.64 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
.++++|+.|+|||||++.+.+-.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57899999999999999988753
No 374
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.92 E-value=0.00055 Score=50.88 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
.++++|+.|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999988753
No 375
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.92 E-value=0.00054 Score=48.50 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=19.7
Q ss_pred eeEEEECCCCCCHHHHHHHHhc
Q 030524 10 YKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~ 31 (175)
..|+++|++||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999998865
No 376
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.92 E-value=0.00055 Score=51.15 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
-++++||.|+|||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47899999999999999988754
No 377
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.92 E-value=0.00017 Score=49.21 Aligned_cols=21 Identities=14% Similarity=0.324 Sum_probs=18.8
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q 030524 11 KLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~ 31 (175)
-|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999998865
No 378
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.92 E-value=0.00062 Score=47.98 Aligned_cols=21 Identities=14% Similarity=0.215 Sum_probs=19.5
Q ss_pred eeEEEECCCCCCHHHHHHHHh
Q 030524 10 YKLVFLGDQSVGKTSIITRFM 30 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~ 30 (175)
..|+|+|++||||||+++.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999887
No 379
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.91 E-value=0.00064 Score=47.38 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=20.6
Q ss_pred CceeEEEECCCCCCHHHHHHHHhc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
.++.|.+.|++|+||||+.+.+..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998763
No 380
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.91 E-value=0.00075 Score=48.36 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.6
Q ss_pred CceeEEEECCCCCCHHHHHHHHh
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFM 30 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~ 30 (175)
....|+|.|++||||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999876
No 381
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.90 E-value=0.00073 Score=49.36 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=19.5
Q ss_pred eeEEEECCCCCCHHHHHHHHhc
Q 030524 10 YKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~ 31 (175)
..|+|+|++|||||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998765
No 382
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.89 E-value=0.00078 Score=46.79 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.4
Q ss_pred ceeEEEECCCCCCHHHHHHHHhc
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
...|+|+|++||||||+...|..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998764
No 383
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.89 E-value=0.00053 Score=51.96 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~ 32 (175)
.++|+|++||||||+++.+++.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 4889999999999999998874
No 384
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.89 E-value=0.00057 Score=49.57 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=20.1
Q ss_pred ceeEEEECCCCCCHHHHHHHHhc
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
.-.++++|+.||||||++..+.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45788999999999999998865
No 385
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.88 E-value=0.00061 Score=50.80 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.1
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
.++++|+.|+|||||++.+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 47899999999999999988753
No 386
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.88 E-value=0.0006 Score=50.88 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
-++++|+.|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 47899999999999999988754
No 387
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.88 E-value=0.00039 Score=46.21 Aligned_cols=23 Identities=22% Similarity=0.124 Sum_probs=16.1
Q ss_pred ceeEEEECCCCCCHHHHHHHHhc
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
...|++.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 388
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.88 E-value=0.00086 Score=49.17 Aligned_cols=141 Identities=15% Similarity=0.198 Sum_probs=75.3
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcCCCCCc----------cc-----------ccceeeEEEEEEEE-------------
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNT----------YQ-----------ATIGIDFLSKTMYL------------- 53 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~~~~~~----------~~-----------~~~~~~~~~~~~~~------------- 53 (175)
..--++++|+.|+||||++..+.+...+.. +. ...++.+.......
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 457899999999999999998875211000 00 00011111000000
Q ss_pred CCeEEEEEEEeCCCccccccc-ccc-----cccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 030524 54 EDRTVRLQLWDTAGQERFRSL-IPS-----YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (175)
Q Consensus 54 ~~~~~~~~i~D~~G~~~~~~~-~~~-----~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~ 127 (175)
......+.+.|++|....... ... ..-..|-.+++.|..... .+......+.... ++. .+++||.|..
T Consensus 208 ~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~--~it-~iilTKlD~~ 281 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV--KID-GIILTKLDAD 281 (328)
T ss_dssp HHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS--CCC-EEEEECGGGC
T ss_pred HhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc--CCC-EEEEeCcCCc
Confidence 001124567999995432221 111 122478889999976542 3333333343322 233 5667999952
Q ss_pred CCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHH
Q 030524 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160 (175)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~ 160 (175)
. ........+...+.|+..++ .|++++
T Consensus 282 a----~~G~~l~~~~~~~~pi~~i~--~Ge~v~ 308 (328)
T 3e70_C 282 A----RGGAALSISYVIDAPILFVG--VGQGYD 308 (328)
T ss_dssp S----CCHHHHHHHHHHTCCEEEEE--CSSSTT
T ss_pred c----chhHHHHHHHHHCCCEEEEe--CCCCcc
Confidence 1 22345667777888888876 666654
No 389
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.88 E-value=0.00073 Score=44.32 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=18.6
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q 030524 11 KLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~ 31 (175)
.|+|.|.+||||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999998754
No 390
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.87 E-value=0.00082 Score=44.59 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=20.2
Q ss_pred ceeEEEECCCCCCHHHHHHHHhc
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
...|+++|++||||||+.+.|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998865
No 391
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.87 E-value=0.00053 Score=53.29 Aligned_cols=24 Identities=21% Similarity=0.456 Sum_probs=21.1
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
-.++++|++||||||+++.+++-.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 459999999999999999988754
No 392
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.85 E-value=0.00063 Score=49.96 Aligned_cols=23 Identities=17% Similarity=0.353 Sum_probs=19.9
Q ss_pred eeEEEECCCCCCHHHHHHHHhcC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
-.++++||+|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999988763
No 393
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.83 E-value=0.00069 Score=48.33 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~ 32 (175)
.++++|++|+|||||++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 4899999999999999998864
No 394
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.82 E-value=0.0023 Score=48.85 Aligned_cols=23 Identities=13% Similarity=0.195 Sum_probs=19.1
Q ss_pred CceeEEEECCCCCCHHHHHHHHh
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFM 30 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~ 30 (175)
.-.-|.|+|+.++|||+|+|.++
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 44667799999999999999654
No 395
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.81 E-value=0.00072 Score=46.52 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=18.8
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q 030524 11 KLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~ 31 (175)
-++++|++|+|||||+..+.+
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478899999999999999875
No 396
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.81 E-value=0.00049 Score=50.86 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
.++++|+.|+|||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999988753
No 397
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.80 E-value=0.00094 Score=45.13 Aligned_cols=25 Identities=12% Similarity=0.186 Sum_probs=21.7
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcC
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
.+..|+++|.+||||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4688999999999999999987653
No 398
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.80 E-value=0.00087 Score=46.49 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=21.6
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcC
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
...-|+|.|+.||||||+++.+.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4467999999999999999988764
No 399
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.79 E-value=0.0015 Score=41.74 Aligned_cols=24 Identities=8% Similarity=0.159 Sum_probs=20.3
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcC
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
...|++.|++|+|||++.+.+...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCcEEEECCCCccHHHHHHHHHHh
Confidence 457999999999999999876653
No 400
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.74 E-value=0.00076 Score=50.62 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~ 32 (175)
.++++|+.|+|||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 4789999999999999998864
No 401
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.74 E-value=0.0007 Score=44.75 Aligned_cols=24 Identities=38% Similarity=0.623 Sum_probs=20.4
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcC
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
.-.+++.|++|+|||+++..+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999987653
No 402
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.74 E-value=0.00088 Score=47.20 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=19.6
Q ss_pred eeEEEECCCCCCHHHHHHHHhc
Q 030524 10 YKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~ 31 (175)
-.|+++|++|+||||+.+.|..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998754
No 403
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.73 E-value=0.00097 Score=46.03 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=20.3
Q ss_pred ceeEEEECCCCCCHHHHHHHHhc
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
.-.+++.|++|+|||+++..+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998865
No 404
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.73 E-value=0.0011 Score=47.67 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=19.8
Q ss_pred eeEEEECCCCCCHHHHHHHHhc
Q 030524 10 YKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~ 31 (175)
..|+++|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 405
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.72 E-value=0.0014 Score=45.52 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=21.3
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcC
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
...-|++.|++||||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3467899999999999999988764
No 406
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.71 E-value=0.0011 Score=44.85 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.3
Q ss_pred eeEEEECCCCCCHHHHHHHHhcC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
-.+++.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999987753
No 407
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.70 E-value=0.00096 Score=44.32 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=18.3
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q 030524 11 KLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~ 31 (175)
-.+|+|+.|+|||||++.+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999998754
No 408
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.70 E-value=0.0013 Score=47.31 Aligned_cols=25 Identities=16% Similarity=0.124 Sum_probs=20.6
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcC
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
.+..+++.||||+|||+|...+...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456778899999999999988753
No 409
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.69 E-value=0.00097 Score=49.50 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=20.2
Q ss_pred ceeEEEECCCCCCHHHHHHHHhc
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
.-.|+++|+.||||||++..+.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 45789999999999999998765
No 410
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.69 E-value=0.0014 Score=44.80 Aligned_cols=23 Identities=13% Similarity=0.231 Sum_probs=20.0
Q ss_pred ceeEEEECCCCCCHHHHHHHHhc
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
...|+++|++|+||||+.+.|..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998765
No 411
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.69 E-value=0.0013 Score=46.19 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=20.3
Q ss_pred ceeEEEECCCCCCHHHHHHHHhc
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
+-.++++|++|+|||++++.+.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 44699999999999999998875
No 412
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.68 E-value=0.00049 Score=50.97 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
.++++|+.|+|||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999988754
No 413
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.68 E-value=0.0013 Score=42.58 Aligned_cols=19 Identities=21% Similarity=0.571 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHh
Q 030524 12 LVFLGDQSVGKTSIITRFM 30 (175)
Q Consensus 12 i~l~G~~~~GKSsli~~l~ 30 (175)
.+|+|+.|+||||+++.+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4788999999999999875
No 414
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.67 E-value=0.0017 Score=49.12 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=21.1
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcC
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
.+.-|+++|++||||||+.+.|...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3456888999999999999998753
No 415
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.65 E-value=0.00087 Score=51.43 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.0
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
-.++|+|+.|+|||||++.+++-.
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCcc
Confidence 468999999999999999988753
No 416
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.65 E-value=0.0011 Score=45.19 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=19.7
Q ss_pred eeEEEECCCCCCHHHHHHHHhc
Q 030524 10 YKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~ 31 (175)
--++++|++|+|||||+..+..
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999987
No 417
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.65 E-value=0.0011 Score=45.90 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~ 32 (175)
-+.++|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5789999999999999999874
No 418
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.64 E-value=0.00093 Score=48.06 Aligned_cols=22 Identities=9% Similarity=0.305 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~ 32 (175)
-++|+|++|+|||||+..+.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999988764
No 419
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.64 E-value=0.0011 Score=51.20 Aligned_cols=91 Identities=13% Similarity=0.095 Sum_probs=48.2
Q ss_pred EEEEEEeCCCcccccc-cc---c-------cc-ccCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 030524 58 VRLQLWDTAGQERFRS-LI---P-------SY-IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD 125 (175)
Q Consensus 58 ~~~~i~D~~G~~~~~~-~~---~-------~~-~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D 125 (175)
+.+.++||+|...... .+ . .. ....+-++++.|.+.... .......+.... ++.. +++||.|
T Consensus 376 ~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~---al~~ak~f~~~~--~itg-vIlTKLD 449 (503)
T 2yhs_A 376 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN---AVSQAKLFHEAV--GLTG-ITLTKLD 449 (503)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHH---HHHHHHHHHHHT--CCSE-EEEECGG
T ss_pred CCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHH---HHHHHHHHHhhc--CCCE-EEEEcCC
Confidence 3578999999532211 11 1 11 113567888999765421 112223333322 3333 5679999
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEeccCCCCCHH
Q 030524 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160 (175)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~ 160 (175)
-. .. ...+...+..++.++..+. .|++++
T Consensus 450 ~t--ak--gG~~lsi~~~~~~PI~fig--~Ge~vd 478 (503)
T 2yhs_A 450 GT--AK--GGVIFSVADQFGIPIRYIG--VGERIE 478 (503)
T ss_dssp GC--SC--CTHHHHHHHHHCCCEEEEE--CSSSGG
T ss_pred Cc--cc--ccHHHHHHHHHCCCEEEEe--cCCChh
Confidence 42 22 2245667777788877753 455543
No 420
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.58 E-value=0.0012 Score=49.25 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.2
Q ss_pred ceeEEEECCCCCCHHHHHHHHhc
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
.-.++++|++|+|||||++.+.+
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34789999999999999998875
No 421
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.58 E-value=0.0011 Score=45.31 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=18.8
Q ss_pred eeEEEECCCCCCHHHHHHHHhc
Q 030524 10 YKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~ 31 (175)
-.+++.||||+|||+++..+..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999887765
No 422
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.57 E-value=0.002 Score=44.57 Aligned_cols=29 Identities=17% Similarity=0.135 Sum_probs=22.0
Q ss_pred CCCCCCceeEEEECCCCCCHHHHHHHHhc
Q 030524 3 PVSALAKYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 3 ~~~~~~~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
||......-|++.|.+||||||+++.|..
T Consensus 15 ~~~~~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 15 QTQGPGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp ----CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45556677899999999999999998764
No 423
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.56 E-value=0.0017 Score=45.15 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=20.1
Q ss_pred CceeEEEECCCCCCHHHHHHHHhc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
.+.+++++|+|||||||+...|..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 458999999999999999998754
No 424
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.55 E-value=0.0013 Score=48.65 Aligned_cols=24 Identities=13% Similarity=0.308 Sum_probs=21.3
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
=+++++|+.|+|||||++.+.+..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998864
No 425
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.54 E-value=0.002 Score=41.26 Aligned_cols=25 Identities=8% Similarity=0.070 Sum_probs=21.3
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcC
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
....|++.|++|+|||++...+...
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999988754
No 426
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.52 E-value=0.00087 Score=48.91 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
-++++|+.|||||||++.+.+..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 45778999999999999999753
No 427
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.52 E-value=0.0022 Score=47.04 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.2
Q ss_pred eeEEEECCCCCCHHHHHHHHhcC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
.-|+|+||+|||||+|...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998764
No 428
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.51 E-value=0.0022 Score=46.55 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=20.8
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcC
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
.+.-|+|+||+|||||+|...|...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh
Confidence 3456888999999999999998753
No 429
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.49 E-value=0.0016 Score=44.19 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=21.8
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCC
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
...|+|+|++|+|||+|...|..+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4568999999999999999998764
No 430
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.46 E-value=0.0013 Score=45.59 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=17.7
Q ss_pred CceeEEEECCCCCCHHHHHHHHhc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
+..-|++.|++||||||+++.|..
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999998765
No 431
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.46 E-value=0.0018 Score=46.13 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=21.2
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcC
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
..-.+++.|++|+|||++++.+...
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3456999999999999999998753
No 432
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.46 E-value=0.0018 Score=43.92 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~ 32 (175)
.+++.|++|+|||+++..+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988753
No 433
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.46 E-value=0.0022 Score=44.58 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=20.9
Q ss_pred CceeEEEECCCCCCHHHHHHHHhc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
....|+++|++||||||+.+.|..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998764
No 434
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.45 E-value=0.0022 Score=44.96 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=20.7
Q ss_pred CceeEEEECCCCCCHHHHHHHHhc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
.+..+++.|++|+|||++++.+..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999998875
No 435
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.45 E-value=0.0018 Score=44.49 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=18.8
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q 030524 11 KLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~ 31 (175)
.+++.|++|+|||+++..+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998865
No 436
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.43 E-value=0.0019 Score=46.36 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=21.0
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcC
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
.-.+++.|++|+|||++++.+...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999999998763
No 437
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.42 E-value=0.0026 Score=45.86 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=19.9
Q ss_pred CceeEEEECCCCCCHHHHHHHHhc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
....+++.|+||+|||+++..+..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999986554
No 438
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.42 E-value=0.0018 Score=49.91 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=18.8
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q 030524 11 KLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~ 31 (175)
.++|+|+.|+|||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999998865
No 439
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.42 E-value=0.0024 Score=50.42 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
.++++|+.|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999988753
No 440
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.42 E-value=0.0021 Score=50.80 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=20.8
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
=.++++|+.|+|||||++.+.+-.
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhhcc
Confidence 368999999999999999887753
No 441
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.40 E-value=0.0022 Score=43.32 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=18.9
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q 030524 11 KLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~ 31 (175)
.|.+.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998754
No 442
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.38 E-value=0.003 Score=49.47 Aligned_cols=24 Identities=13% Similarity=0.214 Sum_probs=21.0
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
=.++++|+.|+|||||++.+.+-.
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999988754
No 443
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.38 E-value=0.002 Score=46.97 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=19.7
Q ss_pred eeEEEECCCCCCHHHHHHHHhc
Q 030524 10 YKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~ 31 (175)
-.+++.|++|+|||+|++.+..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999999998875
No 444
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.37 E-value=0.0022 Score=47.73 Aligned_cols=19 Identities=26% Similarity=0.400 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHh
Q 030524 12 LVFLGDQSVGKTSIITRFM 30 (175)
Q Consensus 12 i~l~G~~~~GKSsli~~l~ 30 (175)
.+|+|+.|+|||||++.++
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4589999999999999876
No 445
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.36 E-value=0.0019 Score=49.30 Aligned_cols=24 Identities=13% Similarity=0.260 Sum_probs=21.1
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
=+++++|+.|+|||||++.+.+..
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 368999999999999999988754
No 446
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.36 E-value=0.0033 Score=44.54 Aligned_cols=26 Identities=15% Similarity=0.286 Sum_probs=22.1
Q ss_pred CCceeEEEECCCCCCHHHHHHHHhcC
Q 030524 7 LAKYKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 7 ~~~~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
.....+++.|++|+|||+++..+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 44568999999999999999988763
No 447
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.35 E-value=0.0024 Score=43.66 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.1
Q ss_pred ceeEEEECCCCCCHHHHHHHHhc
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
+..|++.|++||||||+...|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999988755
No 448
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.33 E-value=0.0019 Score=46.06 Aligned_cols=21 Identities=10% Similarity=0.132 Sum_probs=18.8
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q 030524 11 KLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~ 31 (175)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999998875
No 449
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.33 E-value=0.0023 Score=46.18 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=20.7
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcC
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
.-.+++.|++|+|||+|++.+...
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 346899999999999999998763
No 450
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.32 E-value=0.0031 Score=49.38 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
-++++|+.|+|||||++.+.+..
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57899999999999999988753
No 451
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.27 E-value=0.0034 Score=45.63 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.0
Q ss_pred eeEEEECCCCCCHHHHHHHHhcC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
.-|+|+||+|||||+|...|...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 45788999999999999998764
No 452
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.0036 Score=49.69 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
.++++|+.|+|||||++.+.+-.
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 58999999999999999988743
No 453
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.23 E-value=0.002 Score=50.85 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=20.3
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
=.++++|+.|+|||||++.+.+-.
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 368999999999999999877643
No 454
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.21 E-value=0.0022 Score=50.78 Aligned_cols=23 Identities=13% Similarity=0.310 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
.++++|+.|+|||||++.+.+-.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 68999999999999999887753
No 455
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.20 E-value=0.0027 Score=44.02 Aligned_cols=21 Identities=24% Similarity=0.537 Sum_probs=17.8
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q 030524 11 KLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~ 31 (175)
-++++|++|+|||+|+..++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999877654
No 456
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.20 E-value=0.0029 Score=45.45 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.3
Q ss_pred ceeEEEECCCCCCHHHHHHHHhc
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
+-.+++.|++|+|||++++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998865
No 457
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.20 E-value=0.0025 Score=50.56 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=20.8
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
=.++++|+.|+|||||++.+.+-.
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCc
Confidence 368999999999999999887743
No 458
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.19 E-value=0.003 Score=45.81 Aligned_cols=86 Identities=17% Similarity=0.127 Sum_probs=47.3
Q ss_pred EEEEEEeCCCcccccc-c----------ccccc-cCCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 030524 58 VRLQLWDTAGQERFRS-L----------IPSYI-RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD 125 (175)
Q Consensus 58 ~~~~i~D~~G~~~~~~-~----------~~~~~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D 125 (175)
..+.+.|+||...... . +...+ ..++.+++|.|.... .+.+.. ...+... .++. -+++||.|
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~-a~~~~~~--~~i~-gvVlTk~D 260 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQ-AKIFKEA--VNVT-GIILTKLD 260 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHH-HHHHHHH--SCCC-EEEEECGG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHH-HHHHHhc--CCCC-EEEEeCCC
Confidence 3589999999532111 1 11111 247889999998633 222222 2233322 2233 34569999
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEecc
Q 030524 126 LVEKRQVSIEEGEAKSRELNVMFIETSA 153 (175)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 153 (175)
... . ...+.......+.|+..+..
T Consensus 261 ~~~--~--gG~~l~~~~~~~~Pi~~i~~ 284 (306)
T 1vma_A 261 GTA--K--GGITLAIARELGIPIKFIGV 284 (306)
T ss_dssp GCS--C--TTHHHHHHHHHCCCEEEEEC
T ss_pred Ccc--c--hHHHHHHHHHHCCCEEEEeC
Confidence 532 2 22477778888888777743
No 459
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.18 E-value=0.0027 Score=45.82 Aligned_cols=85 Identities=14% Similarity=0.062 Sum_probs=47.1
Q ss_pred EEEEEEeCCCcccccc-c---cccccc--CCcEEEEEEECCChhhHHhHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 030524 58 VRLQLWDTAGQERFRS-L---IPSYIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ 131 (175)
Q Consensus 58 ~~~~i~D~~G~~~~~~-~---~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~ 131 (175)
..+.++||+|...... . ....+. ..+..++|+|.+.. ...+..+...+. ..+. .-++.||.|...
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~---~l~~-~giVltk~D~~~--- 253 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS---SVPV-NQYIFTKIDETT--- 253 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS---SSCC-CEEEEECTTTCS---
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh---cCCC-CEEEEeCCCccc---
Confidence 4689999999653322 1 112222 36788889987643 233333322222 1122 245569999642
Q ss_pred CCHHHHHHHHHhcCCeEEEec
Q 030524 132 VSIEEGEAKSRELNVMFIETS 152 (175)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~s 152 (175)
....+...+...++|+..++
T Consensus 254 -~~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 254 -SLGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp -CCHHHHHHHHTCSCCCSEEC
T ss_pred -chhHHHHHHHHHCcCEEEEE
Confidence 12356667778888765554
No 460
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.18 E-value=0.0023 Score=45.19 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=21.2
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcC
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
+...|+|.|.+||||||+++.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3577899999999999999987653
No 461
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.17 E-value=0.0043 Score=49.25 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=20.9
Q ss_pred eeEEEECCCCCCHHHHHHHHhcCC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
=.++++|+.|+|||||++.+.+..
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 358999999999999999988753
No 462
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.16 E-value=0.0033 Score=46.65 Aligned_cols=22 Identities=23% Similarity=0.370 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~ 32 (175)
.++|.|++|+|||++++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988764
No 463
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.16 E-value=0.003 Score=46.35 Aligned_cols=21 Identities=38% Similarity=0.610 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 030524 12 LVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 12 i~l~G~~~~GKSsli~~l~~~ 32 (175)
+++.||+|+||||+++.+.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988764
No 464
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.16 E-value=0.0024 Score=46.89 Aligned_cols=20 Identities=20% Similarity=0.394 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHhc
Q 030524 12 LVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 12 i~l~G~~~~GKSsli~~l~~ 31 (175)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998776
No 465
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.15 E-value=0.0043 Score=48.58 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
.++++|+.|+|||||++.+.+-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999988754
No 466
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.15 E-value=0.0015 Score=46.99 Aligned_cols=24 Identities=13% Similarity=0.222 Sum_probs=17.3
Q ss_pred CceeEEEECCCCCCHHHHHHHHhc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
+.+-|+|.|++||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999988754
No 467
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.14 E-value=0.0051 Score=44.29 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.0
Q ss_pred eeEEEECCCCCCHHHHHHHHhcC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
-.++++|++|+|||+++..+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 46899999999999999987653
No 468
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.14 E-value=0.0036 Score=41.80 Aligned_cols=21 Identities=19% Similarity=0.340 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 030524 12 LVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 12 i~l~G~~~~GKSsli~~l~~~ 32 (175)
|+++|.++||||++..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999865
No 469
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.14 E-value=0.0027 Score=46.93 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=20.7
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcC
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
.-.+++.|++|+|||+|++.+...
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999988763
No 470
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.14 E-value=0.0035 Score=45.52 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=20.2
Q ss_pred ceeEEEECCCCCCHHHHHHHHhc
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
.-.+++.|++|+|||+|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988765
No 471
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.14 E-value=0.0029 Score=50.08 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~ 32 (175)
.++++|+.|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999987764
No 472
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.12 E-value=0.0028 Score=46.88 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=20.2
Q ss_pred eeEEEECCCCCCHHHHHHHHhcC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
--+.|+|++|+|||||+..++..
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999998875
No 473
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.12 E-value=0.0041 Score=47.31 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=21.3
Q ss_pred CceeEEEECCCCCCHHHHHHHHhc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
.+-.|++.||||+|||.|...+.+
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHH
Confidence 356899999999999999999876
No 474
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.10 E-value=0.0041 Score=43.30 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=20.5
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcC
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
+..|++.|.+||||||+++.|...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 356899999999999999988753
No 475
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.10 E-value=0.0051 Score=48.15 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
.++++|+.|+|||||++.+.+-.
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998854
No 476
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.10 E-value=0.0041 Score=42.28 Aligned_cols=19 Identities=21% Similarity=0.571 Sum_probs=16.6
Q ss_pred EEEECCCCCCHHHHHHHHh
Q 030524 12 LVFLGDQSVGKTSIITRFM 30 (175)
Q Consensus 12 i~l~G~~~~GKSsli~~l~ 30 (175)
.+|+|+.|+||||+++.+.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 5688999999999999864
No 477
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.08 E-value=0.0037 Score=45.63 Aligned_cols=24 Identities=13% Similarity=0.271 Sum_probs=20.9
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcC
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
.-.|++.||||+|||+|+..+...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 357999999999999999998763
No 478
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.07 E-value=0.0054 Score=48.73 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
.++++|+.|+|||||++.+.+-.
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998854
No 479
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.06 E-value=0.0044 Score=47.07 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=20.9
Q ss_pred CceeEEEECCCCCCHHHHHHHHhc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
.+-.|++.||||+|||+|+..+.+
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999999875
No 480
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.05 E-value=0.0054 Score=42.07 Aligned_cols=24 Identities=13% Similarity=0.137 Sum_probs=20.4
Q ss_pred CceeEEEECCCCCCHHHHHHHHhc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
...-|++.|++||||||+++.|..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 456788999999999999998754
No 481
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.04 E-value=0.0039 Score=45.42 Aligned_cols=23 Identities=13% Similarity=0.265 Sum_probs=20.4
Q ss_pred ceeEEEECCCCCCHHHHHHHHhc
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
...+++.|+||+|||+|+..+..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999999998865
No 482
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.02 E-value=0.0066 Score=44.90 Aligned_cols=23 Identities=17% Similarity=0.429 Sum_probs=19.6
Q ss_pred ceeEEEECCCCCCHHHHHHHHhc
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
..+|+++|++|+||||+...+..
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999999986644
No 483
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.00 E-value=0.0045 Score=43.20 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=20.5
Q ss_pred CceeEEEECCCCCCHHHHHHHHhc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
...-|++.|++||||||+++.|..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999998764
No 484
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.98 E-value=0.0052 Score=46.80 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=21.3
Q ss_pred CceeEEEECCCCCCHHHHHHHHhc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
.+-.|++.||||+|||+|...+.+
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 356899999999999999999875
No 485
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.97 E-value=0.0044 Score=45.85 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=21.2
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcC
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
..-.+++.|++|+|||++++.+...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999988753
No 486
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.96 E-value=0.0043 Score=45.45 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~ 32 (175)
.+++.|++|+|||++++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999988753
No 487
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.94 E-value=0.0051 Score=40.79 Aligned_cols=25 Identities=16% Similarity=0.391 Sum_probs=21.4
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcCC
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYDK 33 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~~ 33 (175)
-.-+++.|++|+||||+.-.|..+.
T Consensus 16 G~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHTT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHcC
Confidence 3568999999999999999988753
No 488
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.92 E-value=0.0065 Score=48.26 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHhcCCC
Q 030524 12 LVFLGDQSVGKTSIITRFMYDKF 34 (175)
Q Consensus 12 i~l~G~~~~GKSsli~~l~~~~~ 34 (175)
++++|+.|+|||||++.+.+-..
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 78999999999999999887543
No 489
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.91 E-value=0.0019 Score=45.59 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=19.4
Q ss_pred eeEEEECCCCCCHHHHHHHHhc
Q 030524 10 YKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~ 31 (175)
-.+++.|++|+|||+|++.+..
T Consensus 45 ~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHH
Confidence 3588999999999999998865
No 490
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.90 E-value=0.0093 Score=40.14 Aligned_cols=84 Identities=8% Similarity=0.061 Sum_probs=52.9
Q ss_pred EEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHhHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCCCCCHH
Q 030524 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER--GSDVIIVLVGNKTDLVEKRQVSIE 135 (175)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~iiv~nk~D~~~~~~~~~~ 135 (175)
+.+.++|+|+.- .......+..+|.+|++...+. .+ ..+...++.+.... .++.++.+|.|+.+.... ...
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~---~~~ 148 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSP-LD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT---MLN 148 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCT-TT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE---EEH
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCH-HH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch---HHH
Confidence 578999999754 2344455667999999998754 34 56666666665433 245777899999994221 223
Q ss_pred HHHHHHHhcCCeE
Q 030524 136 EGEAKSRELNVMF 148 (175)
Q Consensus 136 ~~~~~~~~~~~~~ 148 (175)
+..+...+++.++
T Consensus 149 ~~~~~l~~~~~~v 161 (206)
T 4dzz_A 149 VLKESIKDTGVKA 161 (206)
T ss_dssp HHHHHHHHHTCCB
T ss_pred HHHHHHHHcCCce
Confidence 3444455555443
No 491
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.89 E-value=0.0058 Score=45.44 Aligned_cols=24 Identities=21% Similarity=0.391 Sum_probs=20.8
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcC
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
...+++.|++|+|||++...+...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999988753
No 492
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.86 E-value=0.0058 Score=45.96 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=21.2
Q ss_pred CceeEEEECCCCCCHHHHHHHHhc
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~ 31 (175)
.+-.|++.||||+|||.|...+.+
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHH
Confidence 356799999999999999999875
No 493
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.85 E-value=0.0048 Score=47.04 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.5
Q ss_pred eeEEEECCCCCCHHHHHHHHhc
Q 030524 10 YKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~ 31 (175)
-.+++.|++|+|||+|++.+.+
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998765
No 494
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.85 E-value=0.0062 Score=45.08 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=21.3
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcC
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
....+++.||||+|||++...+...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999987653
No 495
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.84 E-value=0.0047 Score=45.62 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.7
Q ss_pred eeEEEECCCCCCHHHHHHHHhc
Q 030524 10 YKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~ 31 (175)
-.+++.||||+|||+++..+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998865
No 496
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.82 E-value=0.0066 Score=44.32 Aligned_cols=23 Identities=26% Similarity=0.569 Sum_probs=20.2
Q ss_pred eeEEEECCCCCCHHHHHHHHhcC
Q 030524 10 YKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
-.+++.|++|+|||++++.+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999999999998653
No 497
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.81 E-value=0.0046 Score=47.56 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=20.4
Q ss_pred ceeEEEECCCCCCHHHHHHHHhcC
Q 030524 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 9 ~~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
.-+++++|+||+|||++++.+...
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999987653
No 498
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.80 E-value=0.0031 Score=49.50 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=21.3
Q ss_pred CceeEEEECCCCCCHHHHHHHHhcC
Q 030524 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 8 ~~~~i~l~G~~~~GKSsli~~l~~~ 32 (175)
..-.|+|+|++|||||||++.|.+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHh
Confidence 3467999999999999999988764
No 499
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.80 E-value=0.0057 Score=44.59 Aligned_cols=22 Identities=32% Similarity=0.626 Sum_probs=19.4
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q 030524 11 KLVFLGDQSVGKTSIITRFMYD 32 (175)
Q Consensus 11 ~i~l~G~~~~GKSsli~~l~~~ 32 (175)
-++|.|++|+|||+|++.+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 5788999999999999998754
No 500
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.80 E-value=0.0052 Score=48.17 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=19.4
Q ss_pred eeEEEECCCCCCHHHHHHHHhc
Q 030524 10 YKLVFLGDQSVGKTSIITRFMY 31 (175)
Q Consensus 10 ~~i~l~G~~~~GKSsli~~l~~ 31 (175)
-.++++||+|+|||||++.+.+
T Consensus 109 ~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp CEEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998765
Done!