Query 030525
Match_columns 175
No_of_seqs 147 out of 1509
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 15:02:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030525.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030525hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 4.1E-36 9E-41 213.7 12.4 126 4-130 7-134 (205)
2 KOG0092 GTPase Rab5/YPT51 and 100.0 1.1E-33 2.3E-38 200.6 12.2 124 3-127 2-127 (200)
3 KOG0098 GTPase Rab2, small G p 100.0 1.6E-33 3.5E-38 198.7 10.9 135 1-146 1-137 (216)
4 cd04133 Rop_like Rop subfamily 100.0 1.9E-32 4.1E-37 198.3 14.9 140 7-146 2-141 (176)
5 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 2.6E-32 5.6E-37 198.7 13.9 144 3-146 2-147 (182)
6 KOG0078 GTP-binding protein SE 100.0 1.2E-32 2.7E-37 198.3 11.5 123 4-127 10-134 (207)
7 KOG0080 GTPase Rab18, small G 100.0 1.8E-32 3.8E-37 189.2 10.6 137 5-152 10-151 (209)
8 cd04131 Rnd Rnd subfamily. Th 100.0 7E-32 1.5E-36 195.8 13.9 141 6-146 1-143 (178)
9 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 5.6E-32 1.2E-36 192.2 12.1 125 5-130 21-148 (221)
10 cd01875 RhoG RhoG subfamily. 100.0 2E-31 4.3E-36 195.4 14.1 122 5-126 2-123 (191)
11 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 2.7E-31 5.8E-36 198.5 13.1 144 7-150 2-149 (222)
12 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 5.8E-31 1.3E-35 197.7 14.1 146 5-150 12-161 (232)
13 cd01874 Cdc42 Cdc42 subfamily. 100.0 7.6E-31 1.7E-35 189.8 13.7 141 6-146 1-143 (175)
14 KOG0087 GTPase Rab11/YPT3, sma 100.0 4.5E-31 9.7E-36 189.8 10.8 127 4-131 12-140 (222)
15 cd04121 Rab40 Rab40 subfamily. 100.0 1.9E-30 4E-35 189.9 13.7 123 4-127 4-127 (189)
16 KOG0079 GTP-binding protein H- 100.0 2.8E-31 6.1E-36 181.0 8.6 126 5-131 7-133 (198)
17 KOG0093 GTPase Rab3, small G p 100.0 1.4E-30 3.1E-35 177.3 11.1 122 5-127 20-143 (193)
18 cd04120 Rab12 Rab12 subfamily. 100.0 4.9E-30 1.1E-34 189.4 14.4 120 7-127 1-122 (202)
19 KOG0095 GTPase Rab30, small G 100.0 1.3E-30 2.7E-35 178.2 9.7 125 4-129 5-131 (213)
20 cd01871 Rac1_like Rac1-like su 100.0 1.9E-29 4.1E-34 182.3 15.4 140 7-146 2-143 (174)
21 KOG0394 Ras-related GTPase [Ge 100.0 2.3E-30 4.9E-35 182.4 10.0 121 4-125 7-133 (210)
22 KOG0393 Ras-related small GTPa 100.0 1.2E-30 2.5E-35 188.6 8.3 156 4-159 2-162 (198)
23 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 7.7E-30 1.7E-34 184.1 12.6 121 6-127 2-124 (172)
24 cd04134 Rho3 Rho3 subfamily. 100.0 1.1E-28 2.5E-33 180.5 15.6 121 7-127 1-121 (189)
25 cd04122 Rab14 Rab14 subfamily. 100.0 1.5E-28 3.2E-33 176.0 14.1 121 6-127 2-124 (166)
26 cd04136 Rap_like Rap-like subf 100.0 1.9E-28 4.2E-33 174.3 14.1 120 7-127 2-123 (163)
27 smart00174 RHO Rho (Ras homolo 100.0 3.1E-28 6.8E-33 175.3 15.1 118 9-126 1-118 (174)
28 PTZ00369 Ras-like protein; Pro 100.0 2.7E-28 5.9E-33 178.4 14.9 125 1-127 1-127 (189)
29 cd04102 RabL3 RabL3 (Rab-like3 100.0 2.6E-28 5.7E-33 180.0 13.7 120 7-127 1-146 (202)
30 cd04132 Rho4_like Rho4-like su 100.0 3.5E-28 7.6E-33 177.2 14.2 120 7-126 1-121 (187)
31 cd04117 Rab15 Rab15 subfamily. 100.0 3.3E-28 7.1E-33 173.6 13.5 120 7-127 1-122 (161)
32 cd04130 Wrch_1 Wrch-1 subfamil 100.0 7.7E-28 1.7E-32 173.5 15.6 119 7-125 1-119 (173)
33 cd04175 Rap1 Rap1 subgroup. T 100.0 4.7E-28 1E-32 172.9 13.8 121 6-127 1-123 (164)
34 cd04176 Rap2 Rap2 subgroup. T 100.0 6.7E-28 1.4E-32 171.9 14.3 120 6-126 1-122 (163)
35 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 9.9E-28 2.1E-32 177.0 14.7 118 7-125 1-125 (201)
36 PF00071 Ras: Ras family; Int 100.0 4.5E-28 9.7E-33 172.5 12.2 119 8-127 1-121 (162)
37 KOG0086 GTPase Rab4, small G p 100.0 1.2E-28 2.7E-33 169.0 8.9 125 5-130 8-134 (214)
38 PLN03071 GTP-binding nuclear p 100.0 1.4E-27 3.1E-32 178.5 15.3 120 4-124 11-131 (219)
39 cd04135 Tc10 TC10 subfamily. 100.0 1.3E-27 2.9E-32 172.0 14.4 139 7-145 1-141 (174)
40 cd04144 Ras2 Ras2 subfamily. 100.0 5.5E-28 1.2E-32 177.0 12.3 119 8-127 1-123 (190)
41 cd04140 ARHI_like ARHI subfami 100.0 1E-27 2.2E-32 171.5 13.2 120 7-127 2-125 (165)
42 cd04124 RabL2 RabL2 subfamily. 100.0 2.9E-27 6.3E-32 168.7 15.0 117 7-124 1-118 (161)
43 cd01867 Rab8_Rab10_Rab13_like 100.0 2.2E-27 4.7E-32 170.2 14.3 122 5-127 2-125 (167)
44 cd04138 H_N_K_Ras_like H-Ras/N 100.0 2.4E-27 5.1E-32 168.2 14.1 118 6-124 1-120 (162)
45 cd01865 Rab3 Rab3 subfamily. 100.0 3E-27 6.6E-32 169.1 14.6 120 7-127 2-123 (165)
46 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 2.7E-27 5.9E-32 170.5 14.2 118 8-126 2-122 (170)
47 cd04106 Rab23_lke Rab23-like s 100.0 2.2E-27 4.8E-32 168.8 13.5 120 7-127 1-123 (162)
48 smart00173 RAS Ras subfamily o 100.0 2E-27 4.3E-32 169.5 13.1 120 7-127 1-122 (164)
49 cd00877 Ran Ran (Ras-related n 100.0 5.7E-27 1.2E-31 168.1 15.5 116 7-123 1-117 (166)
50 cd04127 Rab27A Rab27a subfamil 100.0 2.8E-27 6.1E-32 171.3 13.7 123 4-127 2-137 (180)
51 cd04145 M_R_Ras_like M-Ras/R-R 100.0 4.3E-27 9.4E-32 167.5 14.1 120 6-126 2-123 (164)
52 cd04128 Spg1 Spg1p. Spg1p (se 100.0 5.1E-27 1.1E-31 170.9 14.6 116 7-124 1-118 (182)
53 KOG0088 GTPase Rab21, small G 100.0 1.9E-28 4.1E-33 169.0 6.5 126 4-130 11-138 (218)
54 cd04110 Rab35 Rab35 subfamily. 99.9 5.8E-27 1.3E-31 172.7 14.8 123 4-127 4-127 (199)
55 cd01864 Rab19 Rab19 subfamily. 99.9 5.7E-27 1.2E-31 167.5 14.3 122 5-127 2-125 (165)
56 cd04115 Rab33B_Rab33A Rab33B/R 99.9 3.8E-27 8.1E-32 169.5 13.4 121 6-127 2-126 (170)
57 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 6.1E-27 1.3E-31 167.5 14.2 121 6-127 2-124 (166)
58 cd01873 RhoBTB RhoBTB subfamil 99.9 5E-27 1.1E-31 172.6 13.6 139 6-146 2-165 (195)
59 cd04119 RJL RJL (RabJ-Like) su 99.9 5.7E-27 1.2E-31 167.2 13.5 117 7-124 1-124 (168)
60 KOG0395 Ras-related GTPase [Ge 99.9 1.8E-27 4E-32 174.5 10.7 136 5-151 2-141 (196)
61 cd04109 Rab28 Rab28 subfamily. 99.9 6.9E-27 1.5E-31 174.3 13.8 120 7-127 1-126 (215)
62 cd04143 Rhes_like Rhes_like su 99.9 6.3E-27 1.4E-31 177.7 13.8 119 7-126 1-129 (247)
63 cd01870 RhoA_like RhoA-like su 99.9 2E-26 4.3E-31 166.0 15.4 119 7-125 2-120 (175)
64 cd04125 RabA_like RabA-like su 99.9 1.2E-26 2.7E-31 169.4 14.5 120 7-127 1-122 (188)
65 cd04146 RERG_RasL11_like RERG/ 99.9 5.6E-27 1.2E-31 167.5 12.1 119 8-127 1-123 (165)
66 PLN00023 GTP-binding protein; 99.9 1.4E-26 3E-31 179.4 15.0 122 4-126 19-167 (334)
67 cd01868 Rab11_like Rab11-like. 99.9 2E-26 4.3E-31 164.5 14.3 122 5-127 2-125 (165)
68 cd04113 Rab4 Rab4 subfamily. 99.9 1.6E-26 3.4E-31 164.4 13.7 119 7-126 1-121 (161)
69 cd04116 Rab9 Rab9 subfamily. 99.9 2.6E-26 5.6E-31 164.8 14.9 120 3-123 2-127 (170)
70 cd01892 Miro2 Miro2 subfamily. 99.9 3.3E-26 7.2E-31 164.6 15.1 121 4-126 2-124 (169)
71 cd01866 Rab2 Rab2 subfamily. 99.9 2.6E-26 5.6E-31 164.8 14.4 121 5-126 3-125 (168)
72 cd04118 Rab24 Rab24 subfamily. 99.9 3.6E-26 7.8E-31 167.4 15.4 117 7-124 1-119 (193)
73 cd04103 Centaurin_gamma Centau 99.9 2.3E-26 5E-31 163.8 13.6 111 7-124 1-113 (158)
74 cd00157 Rho Rho (Ras homology) 99.9 4.8E-26 1E-30 163.1 15.3 121 7-127 1-121 (171)
75 PLN03110 Rab GTPase; Provision 99.9 2.5E-26 5.4E-31 171.4 14.3 122 5-127 11-134 (216)
76 cd04177 RSR1 RSR1 subgroup. R 99.9 3.5E-26 7.7E-31 164.0 14.5 120 7-127 2-123 (168)
77 PLN03108 Rab family protein; P 99.9 3.3E-26 7.2E-31 170.1 14.7 126 1-127 1-128 (210)
78 KOG0091 GTPase Rab39, small G 99.9 9.6E-28 2.1E-32 166.2 5.7 131 5-146 7-142 (213)
79 cd04111 Rab39 Rab39 subfamily. 99.9 3.1E-26 6.8E-31 170.3 14.1 121 6-127 2-126 (211)
80 smart00176 RAN Ran (Ras-relate 99.9 2.7E-26 5.9E-31 169.2 13.6 112 12-124 1-113 (200)
81 cd04112 Rab26 Rab26 subfamily. 99.9 5.3E-26 1.1E-30 166.6 14.0 119 7-126 1-122 (191)
82 cd01893 Miro1 Miro1 subfamily. 99.9 6.8E-26 1.5E-30 162.3 13.7 120 7-127 1-120 (166)
83 cd04101 RabL4 RabL4 (Rab-like4 99.9 7.7E-26 1.7E-30 161.3 13.7 120 7-127 1-124 (164)
84 cd04126 Rab20 Rab20 subfamily. 99.9 9.2E-26 2E-30 168.5 14.0 113 7-124 1-114 (220)
85 cd01861 Rab6 Rab6 subfamily. 99.9 1.2E-25 2.6E-30 159.7 13.7 118 7-125 1-120 (161)
86 cd04142 RRP22 RRP22 subfamily. 99.9 1.7E-25 3.8E-30 164.8 14.8 119 7-126 1-132 (198)
87 cd04129 Rho2 Rho2 subfamily. 99.9 1.5E-25 3.3E-30 163.6 14.0 119 7-125 2-120 (187)
88 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 9.3E-26 2E-30 161.5 11.8 115 9-127 2-116 (164)
89 cd01860 Rab5_related Rab5-rela 99.9 2.7E-25 5.9E-30 158.2 14.0 119 6-125 1-121 (163)
90 smart00175 RAB Rab subfamily o 99.9 3E-25 6.5E-30 157.9 13.7 119 7-126 1-121 (164)
91 cd01862 Rab7 Rab7 subfamily. 99.9 4.7E-25 1E-29 158.1 14.1 117 7-124 1-123 (172)
92 cd04123 Rab21 Rab21 subfamily. 99.9 5.7E-25 1.2E-29 155.9 14.3 120 7-127 1-122 (162)
93 cd04114 Rab30 Rab30 subfamily. 99.9 1.1E-24 2.4E-29 155.9 15.1 126 1-127 1-129 (169)
94 cd04148 RGK RGK subfamily. Th 99.9 5.4E-25 1.2E-29 164.8 13.9 118 7-127 1-123 (221)
95 cd01863 Rab18 Rab18 subfamily. 99.9 1.4E-24 2.9E-29 154.4 14.9 116 7-123 1-119 (161)
96 cd04149 Arf6 Arf6 subfamily. 99.9 2.5E-25 5.4E-30 159.9 11.1 116 4-124 7-124 (168)
97 cd04139 RalA_RalB RalA/RalB su 99.9 8.5E-25 1.8E-29 155.4 13.7 117 7-124 1-119 (164)
98 PLN03118 Rab family protein; P 99.9 1.6E-24 3.4E-29 161.1 15.0 122 5-127 13-137 (211)
99 KOG0097 GTPase Rab14, small G 99.9 1.3E-25 2.7E-30 152.6 8.2 123 4-127 9-133 (215)
100 KOG0083 GTPase Rab26/Rab37, sm 99.9 4.7E-27 1E-31 157.9 1.1 120 10-130 1-123 (192)
101 smart00177 ARF ARF-like small 99.9 5E-25 1.1E-29 159.3 11.6 117 4-125 11-129 (175)
102 cd04150 Arf1_5_like Arf1-Arf5- 99.9 5.7E-25 1.2E-29 156.7 11.0 115 7-125 1-116 (159)
103 PTZ00132 GTP-binding nuclear p 99.9 3.2E-24 7E-29 159.8 15.5 122 2-124 5-127 (215)
104 KOG0081 GTPase Rab27, small G 99.9 5E-27 1.1E-31 162.1 0.1 126 5-131 8-145 (219)
105 PLN00223 ADP-ribosylation fact 99.9 6.9E-25 1.5E-29 159.5 11.3 117 4-125 15-133 (181)
106 PF08477 Miro: Miro-like prote 99.9 1.8E-24 3.9E-29 146.6 12.3 114 8-121 1-119 (119)
107 cd00876 Ras Ras family. The R 99.9 1.6E-24 3.5E-29 153.3 12.5 118 8-126 1-120 (160)
108 cd04147 Ras_dva Ras-dva subfam 99.9 2E-24 4.4E-29 159.1 13.2 116 8-124 1-118 (198)
109 PTZ00133 ADP-ribosylation fact 99.9 1.4E-24 3.1E-29 157.9 11.3 117 4-125 15-133 (182)
110 cd00154 Rab Rab family. Rab G 99.9 1.2E-23 2.7E-28 147.9 13.6 116 7-123 1-118 (159)
111 cd04137 RheB Rheb (Ras Homolog 99.9 8.6E-24 1.9E-28 153.1 13.1 119 7-126 2-122 (180)
112 cd04161 Arl2l1_Arl13_like Arl2 99.9 7.9E-24 1.7E-28 151.9 12.4 114 8-126 1-116 (167)
113 cd04158 ARD1 ARD1 subfamily. 99.9 6.7E-24 1.4E-28 152.5 11.7 112 8-124 1-114 (169)
114 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 1.7E-23 3.6E-28 152.4 12.8 117 6-124 3-123 (183)
115 cd04157 Arl6 Arl6 subfamily. 99.9 1.5E-23 3.2E-28 148.9 10.6 114 8-125 1-119 (162)
116 cd04154 Arl2 Arl2 subfamily. 99.9 3.8E-23 8.1E-28 149.0 12.5 117 4-125 12-130 (173)
117 KOG4252 GTP-binding protein [S 99.9 3.6E-25 7.9E-30 155.7 1.0 123 4-127 18-141 (246)
118 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 5.4E-23 1.2E-27 148.5 11.6 117 4-124 13-130 (174)
119 COG1100 GTPase SAR1 and relate 99.9 7.9E-23 1.7E-27 152.3 12.4 122 6-127 5-128 (219)
120 cd04151 Arl1 Arl1 subfamily. 99.9 5.8E-23 1.3E-27 145.8 10.8 114 8-125 1-115 (158)
121 cd04156 ARLTS1 ARLTS1 subfamil 99.9 1.5E-22 3.2E-27 143.7 11.8 113 8-124 1-115 (160)
122 cd04159 Arl10_like Arl10-like 99.9 8.6E-22 1.9E-26 138.6 12.3 114 9-126 2-117 (159)
123 cd00878 Arf_Arl Arf (ADP-ribos 99.9 6.6E-22 1.4E-26 140.2 11.1 114 8-126 1-116 (158)
124 cd00879 Sar1 Sar1 subfamily. 99.9 1.3E-21 2.8E-26 142.9 12.7 116 4-124 17-134 (190)
125 cd04160 Arfrp1 Arfrp1 subfamil 99.9 1E-21 2.2E-26 140.3 11.6 114 8-125 1-122 (167)
126 smart00178 SAR Sar1p-like memb 99.9 1.5E-21 3.2E-26 142.3 12.6 116 4-124 15-132 (184)
127 PF00025 Arf: ADP-ribosylation 99.9 2.8E-21 6E-26 139.8 11.2 119 3-125 11-130 (175)
128 cd04105 SR_beta Signal recogni 99.9 4.2E-21 9.2E-26 142.0 10.9 118 8-125 2-124 (203)
129 TIGR00231 small_GTP small GTP- 99.8 3.1E-20 6.7E-25 130.1 13.0 120 6-125 1-123 (161)
130 cd01890 LepA LepA subfamily. 99.8 1.6E-20 3.5E-25 135.6 10.4 114 8-125 2-134 (179)
131 KOG0073 GTP-binding ADP-ribosy 99.8 7.3E-20 1.6E-24 127.1 11.1 118 3-124 13-131 (185)
132 cd04155 Arl3 Arl3 subfamily. 99.8 1.9E-19 4.1E-24 129.3 12.9 117 4-125 12-130 (173)
133 cd01898 Obg Obg subfamily. Th 99.8 7.3E-20 1.6E-24 131.0 10.5 118 8-127 2-131 (170)
134 KOG0070 GTP-binding ADP-ribosy 99.8 6E-20 1.3E-24 130.2 9.7 121 3-127 14-135 (181)
135 cd01897 NOG NOG1 is a nucleola 99.8 2.1E-19 4.7E-24 128.4 12.7 117 8-127 2-130 (168)
136 cd01878 HflX HflX subfamily. 99.8 1.2E-19 2.7E-24 133.9 10.9 122 4-127 39-170 (204)
137 KOG3883 Ras family small GTPas 99.8 3E-19 6.5E-24 122.9 11.6 124 5-129 8-137 (198)
138 cd04171 SelB SelB subfamily. 99.8 1.8E-19 4E-24 127.9 10.5 111 8-125 2-119 (164)
139 cd01891 TypA_BipA TypA (tyrosi 99.8 1E-19 2.3E-24 133.5 9.1 116 6-125 2-132 (194)
140 TIGR03156 GTP_HflX GTP-binding 99.8 3.4E-19 7.4E-24 141.5 11.3 119 5-126 188-317 (351)
141 cd00882 Ras_like_GTPase Ras-li 99.8 7.8E-19 1.7E-23 121.6 11.6 116 11-127 1-119 (157)
142 TIGR00450 mnmE_trmE_thdF tRNA 99.8 9.2E-19 2E-23 142.7 13.4 114 5-125 202-325 (442)
143 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 7.1E-19 1.5E-23 125.5 10.7 114 8-125 2-117 (168)
144 PTZ00099 rab6; Provisional 99.8 1.1E-18 2.4E-23 126.3 11.5 98 29-127 3-102 (176)
145 KOG0075 GTP-binding ADP-ribosy 99.8 1.7E-19 3.6E-24 123.3 4.6 117 6-125 20-137 (186)
146 TIGR02528 EutP ethanolamine ut 99.8 2.5E-19 5.5E-24 124.9 5.7 96 8-124 2-102 (142)
147 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 1.6E-18 3.4E-23 123.2 9.4 121 5-126 9-130 (216)
148 PRK15494 era GTPase Era; Provi 99.8 3.8E-18 8.1E-23 135.2 12.4 118 2-125 48-175 (339)
149 PRK05291 trmE tRNA modificatio 99.8 2.7E-18 5.9E-23 140.5 11.7 115 5-127 214-338 (449)
150 KOG1707 Predicted Ras related/ 99.8 7.2E-19 1.6E-23 143.0 8.2 123 4-127 7-132 (625)
151 PRK12299 obgE GTPase CgtA; Rev 99.8 4.4E-18 9.6E-23 134.2 11.2 119 6-126 158-287 (335)
152 cd04164 trmE TrmE (MnmE, ThdF, 99.8 1.3E-17 2.9E-22 117.2 12.2 113 7-127 2-124 (157)
153 cd01894 EngA1 EngA1 subfamily. 99.8 5.3E-18 1.1E-22 119.4 10.0 112 10-127 1-122 (157)
154 KOG0071 GTP-binding ADP-ribosy 99.8 1.1E-17 2.3E-22 113.7 10.3 120 4-127 15-135 (180)
155 PRK03003 GTP-binding protein D 99.8 9.2E-18 2E-22 138.4 11.9 113 6-124 38-160 (472)
156 cd01881 Obg_like The Obg-like 99.8 1E-17 2.2E-22 120.3 10.6 115 11-127 1-137 (176)
157 PRK03003 GTP-binding protein D 99.8 9.2E-18 2E-22 138.4 11.6 114 5-124 210-336 (472)
158 cd01879 FeoB Ferrous iron tran 99.7 1.6E-17 3.5E-22 117.3 10.5 108 11-126 1-117 (158)
159 PRK04213 GTP-binding protein; 99.7 2.3E-18 5E-23 126.8 6.3 116 4-126 7-146 (201)
160 PRK11058 GTPase HflX; Provisio 99.7 2.5E-17 5.5E-22 133.7 11.6 117 7-125 198-324 (426)
161 TIGR03598 GTPase_YsxC ribosome 99.7 2.2E-17 4.8E-22 119.7 10.2 117 2-125 14-144 (179)
162 KOG1673 Ras GTPases [General f 99.7 1.4E-17 3.1E-22 114.9 8.2 118 5-123 19-137 (205)
163 TIGR00436 era GTP-binding prot 99.7 2.1E-17 4.6E-22 127.2 10.0 111 8-125 2-122 (270)
164 TIGR02729 Obg_CgtA Obg family 99.7 3.3E-17 7.2E-22 129.1 11.3 119 6-126 157-289 (329)
165 cd00881 GTP_translation_factor 99.7 2.7E-17 5.8E-22 119.3 9.7 111 8-124 1-128 (189)
166 PRK00093 GTP-binding protein D 99.7 3.9E-17 8.4E-22 133.5 11.6 112 7-124 2-123 (435)
167 cd01895 EngA2 EngA2 subfamily. 99.7 6.9E-17 1.5E-21 115.2 11.2 114 6-125 2-128 (174)
168 TIGR03594 GTPase_EngA ribosome 99.7 1.1E-16 2.5E-21 130.5 13.6 113 5-123 171-296 (429)
169 TIGR01393 lepA GTP-binding pro 99.7 6.2E-17 1.3E-21 136.3 11.4 117 5-125 2-137 (595)
170 cd04163 Era Era subfamily. Er 99.7 1.1E-16 2.4E-21 113.2 10.5 113 6-124 3-125 (168)
171 TIGR03594 GTPase_EngA ribosome 99.7 1E-16 2.2E-21 130.8 10.9 113 8-126 1-123 (429)
172 cd04167 Snu114p Snu114p subfam 99.7 5.4E-17 1.2E-21 120.9 8.3 112 8-123 2-136 (213)
173 TIGR00487 IF-2 translation ini 99.7 2.6E-16 5.6E-21 132.1 13.0 115 5-124 86-201 (587)
174 cd01889 SelB_euk SelB subfamil 99.7 9.5E-17 2.1E-21 117.6 8.5 114 7-124 1-134 (192)
175 PRK00454 engB GTP-binding prot 99.7 2.2E-16 4.7E-21 115.6 10.4 116 4-125 22-150 (196)
176 PRK12297 obgE GTPase CgtA; Rev 99.7 4.8E-16 1E-20 125.8 12.1 117 7-125 159-289 (424)
177 cd04168 TetM_like Tet(M)-like 99.7 1.7E-16 3.6E-21 120.0 8.8 113 8-124 1-130 (237)
178 PRK09518 bifunctional cytidyla 99.7 2.8E-16 6.2E-21 135.2 11.2 115 5-125 449-576 (712)
179 cd01850 CDC_Septin CDC/Septin. 99.7 6.6E-16 1.4E-20 119.1 11.9 117 5-125 3-158 (276)
180 CHL00189 infB translation init 99.7 3E-16 6.4E-21 133.9 10.8 118 4-125 242-362 (742)
181 PRK05306 infB translation init 99.7 9.6E-16 2.1E-20 131.8 12.9 115 4-124 288-403 (787)
182 cd04169 RF3 RF3 subfamily. Pe 99.7 9.4E-16 2E-20 117.8 11.0 115 7-125 3-138 (267)
183 PF02421 FeoB_N: Ferrous iron 99.7 3.2E-16 7E-21 110.6 7.4 113 7-127 1-122 (156)
184 COG2229 Predicted GTPase [Gene 99.7 1.5E-15 3.3E-20 107.8 10.5 119 4-127 8-138 (187)
185 PRK00089 era GTPase Era; Revie 99.7 1.1E-15 2.4E-20 118.9 10.8 115 4-124 3-127 (292)
186 PRK05433 GTP-binding protein L 99.7 8.1E-16 1.8E-20 129.7 10.8 120 2-125 3-141 (600)
187 cd01885 EF2 EF2 (for archaea a 99.7 6.9E-16 1.5E-20 115.4 9.0 112 8-123 2-138 (222)
188 PRK12296 obgE GTPase CgtA; Rev 99.6 1.7E-15 3.7E-20 124.3 11.6 118 6-126 159-300 (500)
189 KOG0074 GTP-binding ADP-ribosy 99.6 1.8E-15 4E-20 103.0 9.7 119 4-125 15-134 (185)
190 PRK09518 bifunctional cytidyla 99.6 2E-15 4.2E-20 130.0 12.5 115 5-125 274-398 (712)
191 PF09439 SRPRB: Signal recogni 99.6 1.5E-16 3.3E-21 114.7 4.7 119 6-126 3-128 (181)
192 PRK00093 GTP-binding protein D 99.6 4.1E-15 9E-20 121.6 13.6 115 5-125 172-299 (435)
193 COG1160 Predicted GTPases [Gen 99.6 1.2E-15 2.7E-20 121.8 9.6 134 7-146 4-153 (444)
194 TIGR00491 aIF-2 translation in 99.6 1.6E-15 3.4E-20 127.3 10.6 112 6-124 4-135 (590)
195 cd00880 Era_like Era (E. coli 99.6 3E-15 6.6E-20 104.6 10.4 112 11-127 1-121 (163)
196 TIGR00475 selB selenocysteine- 99.6 2.7E-15 5.9E-20 126.2 11.7 111 7-126 1-119 (581)
197 PRK10218 GTP-binding protein; 99.6 3.9E-15 8.5E-20 125.3 12.4 119 4-126 3-136 (607)
198 PRK12298 obgE GTPase CgtA; Rev 99.6 2.3E-15 5.1E-20 121.0 10.5 118 7-126 160-291 (390)
199 PRK12317 elongation factor 1-a 99.6 2E-15 4.3E-20 123.1 10.1 121 1-124 1-153 (425)
200 KOG0076 GTP-binding ADP-ribosy 99.6 2.7E-16 5.9E-21 110.4 4.1 123 1-126 12-142 (197)
201 PRK15467 ethanolamine utilizat 99.6 9.2E-16 2E-20 109.2 6.9 100 8-125 3-106 (158)
202 cd04104 p47_IIGP_like p47 (47- 99.6 2.7E-15 5.8E-20 110.5 9.2 113 6-124 1-121 (197)
203 COG1159 Era GTPase [General fu 99.6 2.6E-15 5.5E-20 114.3 8.8 137 2-144 2-158 (298)
204 KOG4423 GTP-binding protein-li 99.6 3.6E-18 7.8E-23 121.1 -7.2 120 5-125 24-150 (229)
205 cd01896 DRG The developmentall 99.6 3.3E-14 7.1E-19 107.3 13.5 82 8-91 2-91 (233)
206 PF01926 MMR_HSR1: 50S ribosom 99.6 2.4E-14 5.2E-19 96.6 11.5 105 8-119 1-116 (116)
207 COG0486 ThdF Predicted GTPase 99.6 1.6E-14 3.5E-19 115.8 11.4 116 5-127 216-341 (454)
208 PF00009 GTP_EFTU: Elongation 99.6 7.2E-15 1.6E-19 107.3 8.7 116 5-124 2-136 (188)
209 TIGR00483 EF-1_alpha translati 99.6 6.9E-15 1.5E-19 120.0 9.3 119 3-124 4-155 (426)
210 PRK09554 feoB ferrous iron tra 99.6 3E-14 6.5E-19 122.9 13.4 113 6-126 3-128 (772)
211 cd04170 EF-G_bact Elongation f 99.6 8.6E-15 1.9E-19 112.6 8.9 114 8-125 1-131 (268)
212 TIGR01394 TypA_BipA GTP-bindin 99.6 1.1E-14 2.4E-19 122.6 10.2 116 7-126 2-132 (594)
213 PRK04004 translation initiatio 99.6 2.5E-14 5.3E-19 120.4 11.8 113 4-123 4-136 (586)
214 cd04166 CysN_ATPS CysN_ATPS su 99.6 1.4E-14 3.1E-19 107.5 9.2 112 8-124 1-144 (208)
215 TIGR00437 feoB ferrous iron tr 99.6 1.9E-14 4.2E-19 121.3 10.7 106 13-126 1-115 (591)
216 cd01886 EF-G Elongation factor 99.6 3.4E-14 7.3E-19 109.3 10.9 112 8-125 1-131 (270)
217 PRK13351 elongation factor G; 99.6 7.8E-15 1.7E-19 126.0 8.0 116 3-125 5-140 (687)
218 COG1084 Predicted GTPase [Gene 99.6 2.4E-14 5.2E-19 110.2 9.1 120 4-127 166-297 (346)
219 cd01888 eIF2_gamma eIF2-gamma 99.5 2.7E-14 5.8E-19 105.6 9.0 66 54-125 83-152 (203)
220 cd01876 YihA_EngB The YihA (En 99.5 3.3E-14 7.1E-19 100.7 8.9 109 8-124 1-124 (170)
221 TIGR00503 prfC peptide chain r 99.5 4.3E-14 9.4E-19 117.6 10.2 117 4-124 9-146 (527)
222 PRK00741 prfC peptide chain re 99.5 3.6E-14 7.8E-19 118.1 9.2 119 4-126 8-147 (526)
223 KOG0077 Vesicle coat complex C 99.5 1.9E-14 4.1E-19 100.5 6.1 117 5-125 19-136 (193)
224 KOG1423 Ras-like GTPase ERA [C 99.5 3.1E-14 6.7E-19 108.6 7.5 125 3-130 69-205 (379)
225 PF04670 Gtr1_RagA: Gtr1/RagA 99.5 1.2E-13 2.6E-18 103.6 9.6 117 8-126 1-127 (232)
226 KOG0072 GTP-binding ADP-ribosy 99.5 2.4E-14 5.1E-19 97.9 4.5 118 4-125 16-134 (182)
227 COG2262 HflX GTPases [General 99.5 2.5E-13 5.4E-18 107.4 10.6 139 4-145 190-343 (411)
228 cd01884 EF_Tu EF-Tu subfamily. 99.5 2.5E-13 5.4E-18 99.8 9.9 113 6-124 2-132 (195)
229 TIGR00484 EF-G translation elo 99.5 1.9E-13 4.1E-18 117.5 10.6 116 4-125 8-142 (689)
230 COG1160 Predicted GTPases [Gen 99.5 7E-13 1.5E-17 106.3 12.0 115 5-125 177-304 (444)
231 cd01883 EF1_alpha Eukaryotic e 99.5 3.2E-13 6.9E-18 101.0 8.6 111 8-123 1-150 (219)
232 TIGR00490 aEF-2 translation el 99.4 3.4E-13 7.4E-18 116.3 9.2 117 4-124 17-152 (720)
233 smart00010 small_GTPase Small 99.4 7.4E-13 1.6E-17 89.7 9.0 90 7-125 1-92 (124)
234 TIGR03680 eif2g_arch translati 99.4 2.8E-13 6E-18 110.0 7.8 116 4-125 2-149 (406)
235 PRK10512 selenocysteinyl-tRNA- 99.4 1.1E-12 2.3E-17 111.2 11.1 109 8-125 2-119 (614)
236 cd04165 GTPBP1_like GTPBP1-lik 99.4 1E-12 2.2E-17 98.6 9.6 114 8-125 1-153 (224)
237 TIGR00485 EF-Tu translation el 99.4 8.8E-13 1.9E-17 106.7 10.0 116 4-125 10-143 (394)
238 PRK12736 elongation factor Tu; 99.4 1.2E-12 2.5E-17 106.0 9.9 116 4-125 10-143 (394)
239 PRK12735 elongation factor Tu; 99.4 1.8E-12 3.9E-17 104.9 10.6 115 4-124 10-142 (396)
240 CHL00071 tufA elongation facto 99.4 1.7E-12 3.7E-17 105.4 10.5 117 4-126 10-144 (409)
241 PLN03126 Elongation factor Tu; 99.4 1.9E-12 4E-17 106.7 10.1 116 4-125 79-212 (478)
242 KOG1489 Predicted GTP-binding 99.4 3E-12 6.4E-17 98.3 10.2 118 6-125 196-327 (366)
243 PRK12739 elongation factor G; 99.4 3E-12 6.5E-17 110.1 11.1 116 4-125 6-140 (691)
244 PRK04000 translation initiatio 99.4 1.4E-12 3.1E-17 105.9 8.6 116 3-125 6-154 (411)
245 cd01853 Toc34_like Toc34-like 99.4 5E-12 1.1E-16 96.1 10.7 119 4-125 29-164 (249)
246 COG3596 Predicted GTPase [Gene 99.4 4.8E-13 1E-17 100.9 4.9 119 3-125 36-163 (296)
247 cd01899 Ygr210 Ygr210 subfamil 99.4 4.5E-12 9.8E-17 99.5 10.3 80 9-88 1-110 (318)
248 TIGR00991 3a0901s02IAP34 GTP-b 99.4 6.3E-12 1.4E-16 97.5 10.8 118 4-124 36-167 (313)
249 cd01852 AIG1 AIG1 (avrRpt2-ind 99.4 6E-12 1.3E-16 92.5 10.2 113 7-124 1-130 (196)
250 COG0218 Predicted GTPase [Gene 99.3 9E-12 2E-16 90.3 9.7 116 4-126 22-151 (200)
251 cd00066 G-alpha G protein alph 99.3 8.7E-12 1.9E-16 98.1 10.1 75 53-127 160-245 (317)
252 PRK00007 elongation factor G; 99.3 1.4E-11 3.1E-16 106.0 11.9 116 4-125 8-142 (693)
253 PLN03127 Elongation factor Tu; 99.3 1.7E-11 3.7E-16 100.5 11.1 115 4-124 59-191 (447)
254 PRK05124 cysN sulfate adenylyl 99.3 1.1E-11 2.5E-16 102.2 9.9 118 4-124 25-174 (474)
255 PRK00049 elongation factor Tu; 99.3 1.7E-11 3.8E-16 99.2 10.7 115 4-124 10-142 (396)
256 TIGR02034 CysN sulfate adenyly 99.3 1.1E-11 2.5E-16 100.5 8.7 115 7-124 1-147 (406)
257 KOG0090 Signal recognition par 99.3 7.6E-12 1.6E-16 91.1 6.3 116 6-125 38-160 (238)
258 KOG1191 Mitochondrial GTPase [ 99.3 2.4E-11 5.3E-16 98.0 9.7 119 4-125 266-404 (531)
259 PRK05506 bifunctional sulfate 99.3 1.2E-11 2.6E-16 105.5 8.4 118 4-124 22-171 (632)
260 PF10662 PduV-EutP: Ethanolami 99.3 1E-11 2.2E-16 86.1 5.3 96 8-123 3-102 (143)
261 PLN00116 translation elongatio 99.2 2.2E-11 4.8E-16 106.7 8.6 116 4-123 17-163 (843)
262 COG0370 FeoB Fe2+ transport sy 99.2 5.9E-11 1.3E-15 99.3 10.6 117 6-130 3-128 (653)
263 smart00275 G_alpha G protein a 99.2 4.5E-11 9.8E-16 94.9 9.3 75 53-127 183-268 (342)
264 PRK12740 elongation factor G; 99.2 1.8E-11 3.8E-16 105.2 7.2 110 12-125 1-127 (668)
265 PLN00043 elongation factor 1-a 99.2 6.5E-11 1.4E-15 97.1 9.8 116 4-123 5-158 (447)
266 PTZ00416 elongation factor 2; 99.2 7.1E-11 1.5E-15 103.4 10.1 116 4-123 17-157 (836)
267 PTZ00141 elongation factor 1- 99.2 9.2E-11 2E-15 96.2 10.0 117 3-122 4-157 (446)
268 COG0536 Obg Predicted GTPase [ 99.2 3.9E-11 8.4E-16 93.1 7.2 117 7-125 160-290 (369)
269 KOG1532 GTPase XAB1, interacts 99.2 1.6E-11 3.4E-16 92.8 4.1 26 4-29 17-42 (366)
270 KOG1707 Predicted Ras related/ 99.2 4.2E-10 9.2E-15 92.4 12.5 121 3-127 422-543 (625)
271 PRK07560 elongation factor EF- 99.2 1.3E-10 2.8E-15 100.6 9.7 116 4-123 18-152 (731)
272 PF00735 Septin: Septin; Inte 99.2 5.4E-10 1.2E-14 86.5 11.8 117 6-126 4-158 (281)
273 KOG0705 GTPase-activating prot 99.2 1.2E-11 2.7E-16 100.7 2.3 155 5-171 29-187 (749)
274 PF00350 Dynamin_N: Dynamin fa 99.2 1.7E-10 3.7E-15 82.4 7.9 62 56-120 103-168 (168)
275 PF05049 IIGP: Interferon-indu 99.1 8.7E-11 1.9E-15 93.4 5.5 113 4-122 33-153 (376)
276 PRK09602 translation-associate 99.1 6.4E-10 1.4E-14 89.9 10.3 82 7-88 2-113 (396)
277 cd01882 BMS1 Bms1. Bms1 is an 99.1 7.3E-10 1.6E-14 83.2 9.5 110 4-124 37-147 (225)
278 KOG0468 U5 snRNP-specific prot 99.1 3.9E-10 8.4E-15 94.0 7.8 116 3-122 125-261 (971)
279 PF04548 AIG1: AIG1 family; I 99.1 1.2E-09 2.6E-14 81.3 9.6 115 7-126 1-132 (212)
280 COG1163 DRG Predicted GTPase [ 99.1 2.2E-09 4.9E-14 82.9 10.8 86 5-92 62-155 (365)
281 KOG0462 Elongation factor-type 99.0 2.1E-09 4.4E-14 88.0 9.9 120 4-127 58-194 (650)
282 COG0480 FusA Translation elong 99.0 1.6E-09 3.4E-14 92.6 9.3 119 3-125 7-143 (697)
283 TIGR00993 3a0901s04IAP86 chlor 99.0 3.2E-09 7E-14 89.3 9.8 117 5-124 117-250 (763)
284 PRK09866 hypothetical protein; 99.0 4.4E-09 9.6E-14 88.3 10.5 68 55-124 231-303 (741)
285 COG0532 InfB Translation initi 99.0 6.2E-09 1.4E-13 85.1 10.5 119 4-126 3-123 (509)
286 KOG1490 GTP-binding protein CR 98.9 6.9E-10 1.5E-14 89.9 4.1 124 4-130 166-301 (620)
287 PF03029 ATP_bind_1: Conserved 98.9 1.3E-10 2.9E-15 87.9 -0.3 68 55-124 92-170 (238)
288 PRK14845 translation initiatio 98.9 5.4E-09 1.2E-13 92.7 9.1 101 17-124 472-592 (1049)
289 COG5256 TEF1 Translation elong 98.9 1.5E-08 3.3E-13 80.7 9.9 123 2-125 3-160 (428)
290 COG0481 LepA Membrane GTPase L 98.9 1.6E-08 3.4E-13 81.8 9.9 121 3-127 6-145 (603)
291 KOG0082 G-protein alpha subuni 98.9 4.8E-09 1E-13 82.7 6.8 75 53-127 194-279 (354)
292 smart00053 DYNc Dynamin, GTPas 98.9 1.7E-08 3.8E-13 76.2 9.5 70 54-126 125-208 (240)
293 COG5019 CDC3 Septin family pro 98.9 3.5E-08 7.6E-13 77.5 11.3 117 5-125 22-177 (373)
294 KOG2655 Septin family protein 98.9 2.4E-08 5.2E-13 78.9 10.4 116 6-125 21-173 (366)
295 PRK13768 GTPase; Provisional 98.9 3.4E-09 7.4E-14 81.0 5.5 72 55-126 98-178 (253)
296 TIGR02836 spore_IV_A stage IV 98.9 3.2E-08 7E-13 79.4 10.6 114 6-121 17-191 (492)
297 KOG1145 Mitochondrial translat 98.8 2.4E-08 5.3E-13 81.9 9.6 117 4-125 151-268 (683)
298 cd01857 HSR1_MMR1 HSR1/MMR1. 98.8 9.8E-09 2.1E-13 71.6 6.5 54 8-64 85-138 (141)
299 PTZ00258 GTP-binding protein; 98.8 3.4E-08 7.3E-13 79.5 10.1 84 5-88 20-126 (390)
300 COG1217 TypA Predicted membran 98.8 2.8E-08 6E-13 80.3 8.8 119 5-127 4-137 (603)
301 cd01900 YchF YchF subfamily. 98.8 1.2E-08 2.5E-13 78.6 6.5 80 9-88 1-103 (274)
302 PTZ00327 eukaryotic translatio 98.8 1.5E-08 3.3E-13 83.3 7.3 120 3-125 31-186 (460)
303 PRK09601 GTP-binding protein Y 98.8 3.5E-08 7.6E-13 78.6 9.0 82 7-88 3-107 (364)
304 KOG3886 GTP-binding protein [S 98.8 9E-09 2E-13 76.2 4.9 119 6-126 4-132 (295)
305 KOG1547 Septin CDC10 and relat 98.8 2.7E-08 5.8E-13 74.2 6.8 114 5-122 45-196 (336)
306 KOG3905 Dynein light intermedi 98.7 1.1E-07 2.3E-12 73.9 10.0 97 5-104 51-154 (473)
307 cd01858 NGP_1 NGP-1. Autoanti 98.7 8E-08 1.7E-12 68.1 7.2 54 5-63 101-156 (157)
308 cd04178 Nucleostemin_like Nucl 98.7 8.5E-08 1.9E-12 69.1 6.9 54 5-63 116-171 (172)
309 cd01856 YlqF YlqF. Proteins o 98.7 9.2E-08 2E-12 68.8 7.0 56 5-64 114-170 (171)
310 KOG0410 Predicted GTP binding 98.6 3.2E-08 6.9E-13 76.7 4.2 138 5-146 177-329 (410)
311 TIGR00157 ribosome small subun 98.6 8.1E-08 1.7E-12 73.1 6.3 60 65-127 24-84 (245)
312 cd01859 MJ1464 MJ1464. This f 98.6 2E-07 4.4E-12 65.8 7.2 55 5-63 100-155 (156)
313 TIGR03596 GTPase_YlqF ribosome 98.6 1.9E-07 4.1E-12 72.3 7.5 55 5-64 117-173 (276)
314 KOG3887 Predicted small GTPase 98.6 5.1E-08 1.1E-12 72.8 3.3 115 7-125 28-150 (347)
315 COG4108 PrfC Peptide chain rel 98.6 2.4E-07 5.2E-12 74.4 7.2 119 5-127 11-150 (528)
316 COG2895 CysN GTPases - Sulfate 98.6 3.1E-07 6.8E-12 72.0 7.7 123 1-126 1-155 (431)
317 COG4917 EutP Ethanolamine util 98.5 2.5E-08 5.4E-13 67.1 1.3 101 8-127 3-107 (148)
318 PRK09563 rbgA GTPase YlqF; Rev 98.5 4.2E-07 9.1E-12 70.7 8.1 56 5-65 120-177 (287)
319 COG1161 Predicted GTPases [Gen 98.5 3.5E-07 7.5E-12 72.3 6.7 57 4-64 130-187 (322)
320 KOG1954 Endocytosis/signaling 98.5 5.6E-07 1.2E-11 71.1 7.5 118 8-128 60-229 (532)
321 COG0012 Predicted GTPase, prob 98.4 1.1E-06 2.4E-11 69.5 8.1 83 6-88 2-108 (372)
322 cd01855 YqeH YqeH. YqeH is an 98.4 4.9E-07 1.1E-11 66.0 5.8 25 6-30 127-151 (190)
323 PF05783 DLIC: Dynein light in 98.4 2.2E-06 4.8E-11 70.7 10.0 96 6-104 25-127 (472)
324 KOG0461 Selenocysteine-specifi 98.4 2E-06 4.4E-11 67.4 8.4 121 1-125 2-137 (522)
325 TIGR00092 GTP-binding protein 98.4 1.4E-06 3E-11 69.6 7.7 82 7-88 3-108 (368)
326 KOG1486 GTP-binding protein DR 98.4 8.4E-06 1.8E-10 61.5 11.2 99 4-104 60-166 (364)
327 cd01849 YlqF_related_GTPase Yl 98.4 1.1E-06 2.5E-11 62.0 6.5 55 4-63 98-154 (155)
328 KOG0458 Elongation factor 1 al 98.4 5.3E-06 1.1E-10 68.8 10.7 122 5-127 176-332 (603)
329 PRK09435 membrane ATPase/prote 98.3 4.5E-06 9.8E-11 66.0 9.6 62 53-125 148-209 (332)
330 PF03193 DUF258: Protein of un 98.3 6.1E-07 1.3E-11 63.7 4.0 22 8-29 37-58 (161)
331 TIGR03348 VI_IcmF type VI secr 98.3 2.3E-06 4.9E-11 78.0 8.4 110 9-123 114-256 (1169)
332 KOG1491 Predicted GTP-binding 98.3 2.6E-06 5.7E-11 66.6 7.1 85 4-88 18-125 (391)
333 TIGR00750 lao LAO/AO transport 98.3 2.5E-06 5.3E-11 66.9 6.9 63 53-126 126-188 (300)
334 PRK12288 GTPase RsgA; Reviewed 98.2 1.8E-06 3.9E-11 68.8 5.1 22 9-30 208-229 (347)
335 cd01851 GBP Guanylate-binding 98.2 1.3E-05 2.8E-10 60.2 9.2 85 4-88 5-102 (224)
336 PRK12289 GTPase RsgA; Reviewed 98.2 3.1E-06 6.7E-11 67.6 5.8 22 9-30 175-196 (352)
337 KOG1144 Translation initiation 98.2 5.5E-06 1.2E-10 70.6 7.1 109 7-122 476-604 (1064)
338 TIGR03597 GTPase_YqeH ribosome 98.1 3.8E-06 8.3E-11 67.4 5.1 54 7-65 155-215 (360)
339 KOG3859 Septins (P-loop GTPase 98.1 6E-06 1.3E-10 63.1 5.8 116 5-124 41-190 (406)
340 COG5192 BMS1 GTP-binding prote 98.1 2E-05 4.4E-10 65.6 9.0 112 4-127 67-180 (1077)
341 KOG0467 Translation elongation 98.1 1E-05 2.2E-10 69.0 7.3 115 3-121 6-135 (887)
342 cd03112 CobW_like The function 98.1 1.4E-05 3.1E-10 56.8 7.0 63 54-122 87-158 (158)
343 TIGR00157 ribosome small subun 98.1 8.5E-06 1.8E-10 62.0 5.8 23 8-30 122-144 (245)
344 cd01854 YjeQ_engC YjeQ/EngC. 98.1 4.9E-06 1.1E-10 64.8 4.5 24 7-30 162-185 (287)
345 PRK13796 GTPase YqeH; Provisio 98.0 9.7E-06 2.1E-10 65.2 5.5 23 7-29 161-183 (365)
346 KOG2486 Predicted GTPase [Gene 98.0 5.9E-06 1.3E-10 63.0 3.9 113 5-125 135-263 (320)
347 COG0050 TufB GTPases - transla 98.0 1.3E-05 2.8E-10 61.8 5.7 120 4-127 10-145 (394)
348 COG1162 Predicted GTPases [Gen 98.0 1.8E-05 3.9E-10 61.4 5.8 58 8-68 166-230 (301)
349 PRK00098 GTPase RsgA; Reviewed 97.9 1.1E-05 2.3E-10 63.2 4.4 23 8-30 166-188 (298)
350 COG1618 Predicted nucleotide k 97.9 0.00022 4.8E-09 50.5 10.2 113 4-122 3-142 (179)
351 KOG0448 Mitofusin 1 GTPase, in 97.9 9.3E-05 2E-09 62.7 8.8 66 56-125 208-276 (749)
352 KOG0464 Elongation factor G [T 97.8 2E-06 4.4E-11 69.0 -1.3 116 5-124 36-168 (753)
353 PF06858 NOG1: Nucleolar GTP-b 97.8 7.4E-05 1.6E-09 43.5 5.4 43 78-121 14-58 (58)
354 COG3523 IcmF Type VI protein s 97.8 2.9E-05 6.2E-10 70.0 4.9 115 9-124 128-270 (1188)
355 KOG4273 Uncharacterized conser 97.8 0.00012 2.6E-09 55.4 7.4 112 8-123 6-122 (418)
356 KOG1424 Predicted GTP-binding 97.8 3.2E-05 6.9E-10 63.5 4.7 55 6-64 314-369 (562)
357 KOG0447 Dynamin-like GTP bindi 97.7 0.00017 3.7E-09 60.0 8.3 68 55-125 413-494 (980)
358 cd01857 HSR1_MMR1 HSR1/MMR1. 97.7 4.5E-05 9.7E-10 53.0 3.7 52 73-126 7-58 (141)
359 PF09547 Spore_IV_A: Stage IV 97.7 0.0013 2.8E-08 53.5 12.1 117 7-125 18-195 (492)
360 PRK00098 GTPase RsgA; Reviewed 97.7 8.1E-05 1.8E-09 58.3 5.0 49 74-124 77-125 (298)
361 cd01854 YjeQ_engC YjeQ/EngC. 97.6 8.6E-05 1.9E-09 57.8 4.9 51 72-125 73-124 (287)
362 KOG0465 Mitochondrial elongati 97.6 4.7E-05 1E-09 63.7 3.6 117 5-125 38-171 (721)
363 PF00503 G-alpha: G-protein al 97.6 0.00011 2.3E-09 59.7 5.4 74 54-127 236-320 (389)
364 PRK12289 GTPase RsgA; Reviewed 97.6 0.00014 3.1E-09 58.1 5.9 54 69-125 81-135 (352)
365 TIGR01425 SRP54_euk signal rec 97.6 0.00023 5.1E-09 58.2 6.9 113 6-124 100-253 (429)
366 KOG2484 GTPase [General functi 97.6 8E-05 1.7E-09 59.5 3.7 57 4-64 250-307 (435)
367 KOG0085 G protein subunit Galp 97.5 2.3E-05 4.9E-10 58.6 0.5 23 4-26 37-59 (359)
368 KOG2485 Conserved ATP/GTP bind 97.5 7.8E-05 1.7E-09 57.9 3.4 60 4-64 141-206 (335)
369 TIGR00235 udk uridine kinase. 97.5 0.00011 2.4E-09 54.4 3.9 28 1-28 1-28 (207)
370 PF13207 AAA_17: AAA domain; P 97.5 7E-05 1.5E-09 50.3 2.6 22 8-29 1-22 (121)
371 cd01855 YqeH YqeH. YqeH is an 97.5 5.8E-05 1.2E-09 55.0 2.3 52 67-124 24-75 (190)
372 PRK08118 topology modulation p 97.5 8.8E-05 1.9E-09 53.2 3.1 22 8-29 3-24 (167)
373 cd00009 AAA The AAA+ (ATPases 97.5 0.00061 1.3E-08 46.4 6.9 26 6-31 19-44 (151)
374 cd01858 NGP_1 NGP-1. Autoanti 97.5 0.00016 3.5E-09 51.1 4.1 52 73-126 4-55 (157)
375 PRK07261 topology modulation p 97.4 0.00013 2.8E-09 52.5 3.2 22 8-29 2-23 (171)
376 COG5257 GCD11 Translation init 97.4 0.00031 6.6E-09 55.0 5.3 119 4-128 8-158 (415)
377 COG0563 Adk Adenylate kinase a 97.4 0.00014 3E-09 52.7 3.0 23 7-29 1-23 (178)
378 PRK05480 uridine/cytidine kina 97.4 0.00019 4.1E-09 53.1 3.8 29 1-29 1-29 (209)
379 KOG1143 Predicted translation 97.4 0.00035 7.5E-09 55.8 5.4 116 6-125 167-318 (591)
380 PF13671 AAA_33: AAA domain; P 97.4 0.00012 2.5E-09 50.6 2.5 20 9-28 2-21 (143)
381 COG1703 ArgK Putative periplas 97.4 0.00039 8.4E-09 53.9 5.4 62 53-125 143-204 (323)
382 COG5258 GTPBP1 GTPase [General 97.4 0.00015 3.2E-09 58.0 3.1 121 3-127 114-272 (527)
383 KOG0469 Elongation factor 2 [T 97.4 0.00041 8.9E-09 57.3 5.6 115 4-122 17-162 (842)
384 PRK10751 molybdopterin-guanine 97.4 0.00023 5E-09 51.3 3.7 29 1-29 1-29 (173)
385 COG3276 SelB Selenocysteine-sp 97.3 0.0011 2.5E-08 53.7 7.9 111 8-126 2-119 (447)
386 PRK14737 gmk guanylate kinase; 97.3 0.00022 4.7E-09 52.1 3.4 23 7-29 5-27 (186)
387 PRK12727 flagellar biosynthesi 97.3 0.00059 1.3E-08 57.1 6.3 22 7-28 351-372 (559)
388 cd02038 FleN-like FleN is a me 97.3 0.00071 1.5E-08 46.9 5.8 107 10-123 4-110 (139)
389 PRK14738 gmk guanylate kinase; 97.3 0.00028 6.1E-09 52.2 3.8 25 5-29 12-36 (206)
390 PF03266 NTPase_1: NTPase; In 97.3 0.00052 1.1E-08 49.3 4.7 52 8-61 1-52 (168)
391 PF13555 AAA_29: P-loop contai 97.3 0.00033 7.1E-09 41.6 3.0 21 8-28 25-45 (62)
392 cd01983 Fer4_NifH The Fer4_Nif 97.2 0.0022 4.7E-08 40.7 7.1 69 9-90 2-71 (99)
393 COG1126 GlnQ ABC-type polar am 97.2 0.00029 6.3E-09 52.2 3.1 24 8-31 30-53 (240)
394 PF13521 AAA_28: AAA domain; P 97.2 0.00018 3.9E-09 51.1 2.0 22 8-29 1-22 (163)
395 PRK14530 adenylate kinase; Pro 97.2 0.00037 8E-09 51.9 3.7 21 8-28 5-25 (215)
396 cd02019 NK Nucleoside/nucleoti 97.2 0.00035 7.5E-09 42.5 2.9 21 9-29 2-22 (69)
397 cd01859 MJ1464 MJ1464. This f 97.2 0.00019 4.1E-09 50.6 2.0 52 70-125 5-56 (156)
398 COG1419 FlhF Flagellar GTP-bin 97.2 0.0015 3.2E-08 52.8 7.1 64 53-123 281-351 (407)
399 COG0194 Gmk Guanylate kinase [ 97.2 0.00021 4.7E-09 51.7 1.9 25 6-30 4-28 (191)
400 PRK06217 hypothetical protein; 97.2 0.00039 8.5E-09 50.4 3.2 23 7-29 2-24 (183)
401 PF05621 TniB: Bacterial TniB 97.2 0.00082 1.8E-08 52.3 5.1 101 6-120 61-190 (302)
402 COG1136 SalX ABC-type antimicr 97.2 0.00035 7.5E-09 52.4 2.9 22 8-29 33-54 (226)
403 PF04665 Pox_A32: Poxvirus A32 97.2 0.00039 8.5E-09 52.6 3.3 26 4-29 11-36 (241)
404 KOG1487 GTP-binding protein DR 97.1 0.0026 5.6E-08 48.6 7.5 93 7-101 60-160 (358)
405 PRK12288 GTPase RsgA; Reviewed 97.1 0.00098 2.1E-08 53.3 5.6 48 75-125 118-165 (347)
406 smart00382 AAA ATPases associa 97.1 0.00045 9.8E-09 46.6 3.3 26 7-32 3-28 (148)
407 PRK14527 adenylate kinase; Pro 97.1 0.00051 1.1E-08 50.2 3.7 28 1-28 1-28 (191)
408 TIGR00101 ureG urease accessor 97.1 0.00042 9.2E-09 51.1 3.3 24 6-29 1-24 (199)
409 PF00005 ABC_tran: ABC transpo 97.1 0.0004 8.7E-09 47.6 2.7 23 8-30 13-35 (137)
410 PF00004 AAA: ATPase family as 97.1 0.00044 9.5E-09 46.8 2.9 22 9-30 1-22 (132)
411 TIGR03597 GTPase_YqeH ribosome 97.1 0.00023 4.9E-09 57.2 1.6 55 64-124 50-104 (360)
412 TIGR02322 phosphon_PhnN phosph 97.1 0.00046 1E-08 49.7 3.0 22 8-29 3-24 (179)
413 PRK11537 putative GTP-binding 97.1 0.00097 2.1E-08 52.7 5.0 22 8-29 6-27 (318)
414 PRK10078 ribose 1,5-bisphospho 97.1 0.00053 1.2E-08 49.9 3.3 22 8-29 4-25 (186)
415 cd00071 GMPK Guanosine monopho 97.1 0.00051 1.1E-08 47.6 3.0 21 9-29 2-22 (137)
416 PTZ00088 adenylate kinase 1; P 97.1 0.00062 1.4E-08 51.3 3.7 28 1-28 1-28 (229)
417 PF13238 AAA_18: AAA domain; P 97.0 0.00046 9.9E-09 46.5 2.5 21 9-29 1-21 (129)
418 COG3640 CooC CO dehydrogenase 97.0 0.0067 1.4E-07 45.6 8.7 48 73-123 151-198 (255)
419 PRK03839 putative kinase; Prov 97.0 0.00058 1.3E-08 49.3 3.1 22 8-29 2-23 (180)
420 TIGR03263 guanyl_kin guanylate 97.0 0.0007 1.5E-08 48.7 3.1 22 8-29 3-24 (180)
421 TIGR01360 aden_kin_iso1 adenyl 97.0 0.00068 1.5E-08 49.0 3.0 21 8-28 5-25 (188)
422 cd03238 ABC_UvrA The excision 97.0 0.0008 1.7E-08 48.7 3.3 21 7-27 22-42 (176)
423 PRK06547 hypothetical protein; 97.0 0.00087 1.9E-08 48.3 3.4 27 3-29 12-38 (172)
424 COG1116 TauB ABC-type nitrate/ 96.9 0.00075 1.6E-08 51.0 3.0 20 9-28 32-51 (248)
425 COG1120 FepC ABC-type cobalami 96.9 0.00074 1.6E-08 51.6 3.0 21 8-28 30-50 (258)
426 PF07728 AAA_5: AAA domain (dy 96.9 0.00071 1.5E-08 46.6 2.7 22 8-29 1-22 (139)
427 cd02042 ParA ParA and ParB of 96.9 0.0044 9.4E-08 40.4 6.3 82 9-102 2-84 (104)
428 TIGR00073 hypB hydrogenase acc 96.9 0.00097 2.1E-08 49.4 3.4 26 4-29 20-45 (207)
429 PRK14532 adenylate kinase; Pro 96.9 0.00089 1.9E-08 48.6 3.2 21 8-28 2-22 (188)
430 COG0523 Putative GTPases (G3E 96.9 0.0054 1.2E-07 48.6 7.7 21 9-29 4-24 (323)
431 KOG0099 G protein subunit Galp 96.9 0.00065 1.4E-08 51.8 2.4 74 53-126 201-285 (379)
432 PRK08233 hypothetical protein; 96.9 0.001 2.2E-08 47.8 3.4 24 6-29 3-26 (182)
433 PRK00300 gmk guanylate kinase; 96.9 0.0011 2.4E-08 48.7 3.7 24 6-29 5-28 (205)
434 cd02023 UMPK Uridine monophosp 96.9 0.00082 1.8E-08 49.3 2.9 21 9-29 2-22 (198)
435 cd00820 PEPCK_HprK Phosphoenol 96.9 0.00092 2E-08 44.3 2.8 20 8-27 17-36 (107)
436 PF03205 MobB: Molybdopterin g 96.9 0.0007 1.5E-08 47.1 2.4 22 8-29 2-23 (140)
437 PRK13949 shikimate kinase; Pro 96.9 0.00098 2.1E-08 47.8 3.2 21 8-28 3-23 (169)
438 PRK14531 adenylate kinase; Pro 96.9 0.00099 2.1E-08 48.3 3.2 23 7-29 3-25 (183)
439 PRK05416 glmZ(sRNA)-inactivati 96.9 0.0074 1.6E-07 47.1 8.2 90 6-123 6-97 (288)
440 cd01130 VirB11-like_ATPase Typ 96.9 0.001 2.2E-08 48.4 3.2 24 6-29 25-48 (186)
441 PF13401 AAA_22: AAA domain; P 96.9 0.00077 1.7E-08 45.7 2.4 22 8-29 6-27 (131)
442 PHA00729 NTP-binding motif con 96.9 0.0011 2.4E-08 49.7 3.4 25 5-29 16-40 (226)
443 cd01428 ADK Adenylate kinase ( 96.9 0.00087 1.9E-08 48.7 2.8 22 8-29 1-22 (194)
444 PRK01889 GTPase RsgA; Reviewed 96.9 0.001 2.2E-08 53.4 3.3 56 8-63 197-256 (356)
445 PRK14723 flhF flagellar biosyn 96.9 0.0029 6.3E-08 55.3 6.3 21 8-28 187-207 (767)
446 PRK05057 aroK shikimate kinase 96.8 0.0014 3E-08 47.2 3.6 23 7-29 5-27 (172)
447 TIGR01359 UMP_CMP_kin_fam UMP- 96.8 0.0011 2.4E-08 47.8 3.0 20 9-28 2-21 (183)
448 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.8 0.0012 2.6E-08 49.1 3.2 22 8-29 32-53 (218)
449 cd01131 PilT Pilus retraction 96.8 0.0011 2.3E-08 48.8 2.9 22 9-30 4-25 (198)
450 PRK05541 adenylylsulfate kinas 96.8 0.0015 3.3E-08 46.9 3.6 26 3-28 4-29 (176)
451 PRK13851 type IV secretion sys 96.8 0.0048 1E-07 49.3 6.7 25 6-30 162-186 (344)
452 PLN02200 adenylate kinase fami 96.8 0.0016 3.4E-08 49.3 3.8 24 5-28 42-65 (234)
453 PF13191 AAA_16: AAA ATPase do 96.8 0.00092 2E-08 48.0 2.4 24 5-28 23-46 (185)
454 KOG0460 Mitochondrial translat 96.8 0.0051 1.1E-07 48.7 6.5 153 4-159 52-239 (449)
455 TIGR01351 adk adenylate kinase 96.8 0.0011 2.3E-08 49.2 2.8 21 8-28 1-21 (210)
456 cd02025 PanK Pantothenate kina 96.8 0.0011 2.3E-08 49.7 2.8 20 9-28 2-21 (220)
457 PRK13900 type IV secretion sys 96.8 0.0038 8.3E-08 49.7 6.0 26 6-31 160-185 (332)
458 TIGR00960 3a0501s02 Type II (G 96.8 0.0014 3E-08 48.7 3.3 22 8-29 31-52 (216)
459 cd03222 ABC_RNaseL_inhibitor T 96.8 0.0013 2.8E-08 47.6 3.0 23 8-30 27-49 (177)
460 cd03226 ABC_cobalt_CbiO_domain 96.8 0.0014 3E-08 48.3 3.3 22 8-29 28-49 (205)
461 PLN02674 adenylate kinase 96.8 0.0015 3.2E-08 49.7 3.4 25 4-28 29-53 (244)
462 PRK02496 adk adenylate kinase; 96.8 0.0015 3.3E-08 47.3 3.4 22 7-28 2-23 (184)
463 PRK00625 shikimate kinase; Pro 96.8 0.0014 3.1E-08 47.3 3.1 21 8-28 2-22 (173)
464 TIGR00150 HI0065_YjeE ATPase, 96.7 0.0048 1E-07 42.5 5.6 22 8-29 24-45 (133)
465 PRK09270 nucleoside triphospha 96.7 0.0017 3.6E-08 48.9 3.6 25 4-28 31-55 (229)
466 cd03225 ABC_cobalt_CbiO_domain 96.7 0.0015 3.2E-08 48.3 3.3 22 8-29 29-50 (211)
467 TIGR01166 cbiO cobalt transpor 96.7 0.0014 2.9E-08 47.8 3.0 22 8-29 20-41 (190)
468 TIGR03608 L_ocin_972_ABC putat 96.7 0.0015 3.3E-08 48.1 3.3 23 8-30 26-48 (206)
469 PF05729 NACHT: NACHT domain 96.7 0.0013 2.9E-08 46.1 2.9 21 9-29 3-23 (166)
470 cd03261 ABC_Org_Solvent_Resist 96.7 0.0015 3.3E-08 49.2 3.3 22 8-29 28-49 (235)
471 cd03292 ABC_FtsE_transporter F 96.7 0.0016 3.5E-08 48.2 3.3 22 8-29 29-50 (214)
472 cd03264 ABC_drug_resistance_li 96.7 0.0014 3.1E-08 48.4 3.0 22 8-29 27-48 (211)
473 KOG3347 Predicted nucleotide k 96.7 0.0012 2.7E-08 46.1 2.4 24 5-28 6-29 (176)
474 cd03259 ABC_Carb_Solutes_like 96.7 0.0016 3.5E-08 48.2 3.3 22 8-29 28-49 (213)
475 KOG3929 Uncharacterized conser 96.7 0.0007 1.5E-08 51.5 1.3 87 4-93 43-135 (363)
476 TIGR02673 FtsE cell division A 96.7 0.0017 3.6E-08 48.2 3.3 22 8-29 30-51 (214)
477 cd03293 ABC_NrtD_SsuB_transpor 96.7 0.0017 3.7E-08 48.4 3.3 22 8-29 32-53 (220)
478 cd03265 ABC_DrrA DrrA is the A 96.7 0.0017 3.7E-08 48.4 3.3 22 8-29 28-49 (220)
479 TIGR02315 ABC_phnC phosphonate 96.7 0.0017 3.6E-08 49.1 3.3 22 8-29 30-51 (243)
480 COG3638 ABC-type phosphate/pho 96.7 0.0015 3.2E-08 49.1 2.8 21 8-28 32-52 (258)
481 PF13479 AAA_24: AAA domain 96.7 0.0016 3.4E-08 48.5 3.0 22 5-26 2-23 (213)
482 cd03269 ABC_putative_ATPase Th 96.7 0.0018 3.9E-08 47.9 3.3 23 8-30 28-50 (210)
483 PRK00131 aroK shikimate kinase 96.7 0.0022 4.7E-08 45.6 3.6 24 6-29 4-27 (175)
484 TIGR01313 therm_gnt_kin carboh 96.7 0.0013 2.8E-08 46.6 2.4 21 9-29 1-21 (163)
485 cd03224 ABC_TM1139_LivF_branch 96.7 0.0017 3.8E-08 48.3 3.2 22 8-29 28-49 (222)
486 cd03262 ABC_HisP_GlnQ_permease 96.7 0.0018 3.9E-08 47.9 3.3 23 8-30 28-50 (213)
487 COG3840 ThiQ ABC-type thiamine 96.7 0.0017 3.8E-08 47.1 3.0 21 8-28 27-47 (231)
488 COG3839 MalK ABC-type sugar tr 96.7 0.0016 3.4E-08 51.7 3.0 21 9-29 32-52 (338)
489 TIGR02211 LolD_lipo_ex lipopro 96.7 0.0018 4E-08 48.2 3.3 23 8-30 33-55 (221)
490 cd03229 ABC_Class3 This class 96.6 0.002 4.2E-08 46.5 3.3 22 8-29 28-49 (178)
491 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.6 0.0018 3.8E-08 45.2 3.0 23 8-30 28-50 (144)
492 cd03263 ABC_subfamily_A The AB 96.6 0.0019 4.1E-08 48.1 3.3 23 8-30 30-52 (220)
493 cd03218 ABC_YhbG The ABC trans 96.6 0.0019 4E-08 48.5 3.3 22 8-29 28-49 (232)
494 COG1121 ZnuC ABC-type Mn/Zn tr 96.6 0.0017 3.7E-08 49.5 3.0 21 8-28 32-52 (254)
495 PRK14528 adenylate kinase; Pro 96.6 0.002 4.2E-08 47.0 3.2 22 7-28 2-23 (186)
496 COG1936 Predicted nucleotide k 96.6 0.0018 3.9E-08 46.4 2.9 20 8-27 2-21 (180)
497 cd03258 ABC_MetN_methionine_tr 96.6 0.0019 4.1E-08 48.5 3.3 23 8-30 33-55 (233)
498 PLN03025 replication factor C 96.6 0.0066 1.4E-07 47.9 6.5 24 7-30 35-58 (319)
499 PRK13541 cytochrome c biogenes 96.6 0.0027 5.8E-08 46.5 4.0 23 8-30 28-50 (195)
500 cd03257 ABC_NikE_OppD_transpor 96.6 0.0019 4.2E-08 48.2 3.2 23 8-30 33-55 (228)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-36 Score=213.68 Aligned_cols=126 Identities=38% Similarity=0.766 Sum_probs=118.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeE-EEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
...+||+++|++|||||+|+.||..+.|.+.+..|++.++. +++.++++.+++++|||+||++|+.....||++||+||
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii 86 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 86 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence 47899999999999999999999999999999999977765 57889999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccchhhc
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFI 130 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~ 130 (175)
+|||+++.+||+++ ..|+.++.+.. +++|.++||||+|+.+.+.+..
T Consensus 87 ~vyDiT~~~SF~~v-~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~ 134 (205)
T KOG0084|consen 87 FVYDITKQESFNNV-KRWIQEIDRYASENVPKLLVGNKCDLTEKRVVST 134 (205)
T ss_pred EEEEcccHHHhhhH-HHHHHHhhhhccCCCCeEEEeeccccHhheecCH
Confidence 99999999999999 99999999988 6889999999999999887444
No 2
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-33 Score=200.64 Aligned_cols=124 Identities=38% Similarity=0.747 Sum_probs=114.7
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v 81 (175)
....+||+++|+.+||||||+.||..+.|.+...||++..+ .+.+.+++..++|.||||+||++|+++.+.||++|+++
T Consensus 2 ~~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AA 81 (200)
T KOG0092|consen 2 ATREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAA 81 (200)
T ss_pred CcceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEE
Confidence 36789999999999999999999999999998889996664 66888999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccch
Q 030525 82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
|+|||+++.+||..+ +.|++++++.. +++-+.|||||+||.+.|+
T Consensus 82 ivvYDit~~~SF~~a-K~WvkeL~~~~~~~~vialvGNK~DL~~~R~ 127 (200)
T KOG0092|consen 82 IVVYDITDEESFEKA-KNWVKELQRQASPNIVIALVGNKADLLERRE 127 (200)
T ss_pred EEEEecccHHHHHHH-HHHHHHHHhhCCCCeEEEEecchhhhhhccc
Confidence 999999999999999 99999999887 5677788999999998776
No 3
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-33 Score=198.66 Aligned_cols=135 Identities=30% Similarity=0.595 Sum_probs=125.2
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEE-EEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 030525 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGAD 79 (175)
Q Consensus 1 m~~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 79 (175)
|.....+|++++|+.|||||+|+.||+...|.+.+..|.+..+.. .++++++++++++|||+|++.|++....||+++.
T Consensus 1 m~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~ 80 (216)
T KOG0098|consen 1 MSYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAA 80 (216)
T ss_pred CCccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCc
Confidence 667789999999999999999999999999999999998777754 6889999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccchhhccCCCCccccccchhcc
Q 030525 80 VFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQVDYK 146 (175)
Q Consensus 80 ~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~vs~~~~~~~ 146 (175)
++++|||+++++||..+ ..|+..+++.. +|.-++|+|||+||...|. |+.+||+++
T Consensus 81 GalLVydit~r~sF~hL-~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~----------Vs~EEGeaF 137 (216)
T KOG0098|consen 81 GALLVYDITRRESFNHL-TSWLEDARQHSNENMVIMLIGNKSDLEARRE----------VSKEEGEAF 137 (216)
T ss_pred ceEEEEEccchhhHHHH-HHHHHHHHHhcCCCcEEEEEcchhhhhcccc----------ccHHHHHHH
Confidence 99999999999999999 99999999986 8999999999999998876 777777765
No 4
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=1.9e-32 Score=198.33 Aligned_cols=140 Identities=86% Similarity=1.382 Sum_probs=121.1
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d 86 (175)
+|++++|++|||||||+.+|..+.|..++.||.++.+...+..++..+++++|||+|+++|+.++..+++++|++|+|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 79999999999999999999999999899999988887777889999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccchhhccCCCCccccccchhcc
Q 030525 87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQVDYK 146 (175)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~vs~~~~~~~ 146 (175)
++++.||+++.+.|+..+.+..+++|++|||||+||.+++.....+....+++.+++..+
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~ 141 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEEL 141 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHH
Confidence 999999999856899999877778999999999999765532222233345666666654
No 5
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=2.6e-32 Score=198.66 Aligned_cols=144 Identities=35% Similarity=0.681 Sum_probs=124.2
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
++..+||+++|++|||||||+++|..+.|.+++.||....+.+.+.+++..+.+++|||+|+++|..+++.+++++|+++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 46788999999999999999999999999999999998888888888999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccchhhc--cCCCCccccccchhcc
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFI--DHPGAVPITTAQVDYK 146 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~--~~~~~~~vs~~~~~~~ 146 (175)
+|||++++.||+++...|.+.+.+..++.|++|||||+||.+...... ...+.++++.++++.+
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~ 147 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANM 147 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHH
Confidence 999999999999975789999988778899999999999965322111 1122346888777765
No 6
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-32 Score=198.33 Aligned_cols=123 Identities=35% Similarity=0.721 Sum_probs=115.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
...+||+++|++|||||+++.||..+.|...+..|.+.++ .+++..++..+.+++|||+||++|+.+...|+++|++++
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~ 89 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIL 89 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeE
Confidence 5789999999999999999999999999999999997666 557889999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccch
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
+|||+++..||+++ ..|++.+.... +++|++|||||+|+.++|+
T Consensus 90 LvyDitne~Sfeni-~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~ 134 (207)
T KOG0078|consen 90 LVYDITNEKSFENI-RNWIKNIDEHASDDVVKILVGNKCDLEEKRQ 134 (207)
T ss_pred EEEEccchHHHHHH-HHHHHHHHhhCCCCCcEEEeecccccccccc
Confidence 99999999999999 77999999887 5899999999999999777
No 7
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.8e-32 Score=189.19 Aligned_cols=137 Identities=31% Similarity=0.607 Sum_probs=119.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEE-EEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
..+||+++|++|||||||+.||..+.|.+....|++.++.. .+.+++..+++.+|||+||++|+.+.+.||++|.++|+
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIl 89 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIIL 89 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEE
Confidence 46999999999999999999999999988866667777654 67899999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCcccchhhccCCCCccccccchhcc--CcccHH
Q 030525 84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQVDYK--HPVCVY 152 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~vs~~~~~~~--~~~~~~ 152 (175)
|||++.+++|.++ ..|++++..++ +++-.++||||+|.+++|. |+.++|... ...|.+
T Consensus 90 VYDVT~Rdtf~kL-d~W~~Eld~Ystn~diikmlVgNKiDkes~R~----------V~reEG~kfAr~h~~LF 151 (209)
T KOG0080|consen 90 VYDVTSRDTFVKL-DIWLKELDLYSTNPDIIKMLVGNKIDKESERV----------VDREEGLKFARKHRCLF 151 (209)
T ss_pred EEEccchhhHHhH-HHHHHHHHhhcCCccHhHhhhcccccchhccc----------ccHHHHHHHHHhhCcEE
Confidence 9999999999999 99999999887 4677799999999877666 666666544 444443
No 8
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.98 E-value=7e-32 Score=195.79 Aligned_cols=141 Identities=35% Similarity=0.682 Sum_probs=120.9
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~ 85 (175)
.+||+++|++|||||||+++|..+.|..++.||....+.+.+.+++..+.+++|||+|+++|..+++.+++++|++++||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 36999999999999999999999999999999988888778888999999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccchhhc--cCCCCccccccchhcc
Q 030525 86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFI--DHPGAVPITTAQVDYK 146 (175)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~--~~~~~~~vs~~~~~~~ 146 (175)
|++++.||+++...|...+.+..++.|+++||||+||.++..... ...+..+++.++++.+
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~ 143 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAI 143 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHH
Confidence 999999999965789999988778999999999999965322111 1112346777777655
No 9
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=5.6e-32 Score=192.21 Aligned_cols=125 Identities=37% Similarity=0.628 Sum_probs=115.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
+.+|++++|+.+|||||||+||+.++|..+|.+|++.++ .+++.+.+.++.+++|||+||++|+++.+.|++++.++|+
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi 100 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 100 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence 458999999999999999999999999999999997776 5678899999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC-C-CCcEEEEEeCCCCcccchhhc
Q 030525 84 AFSLISKASYENVAKKWIPELRHYA-P-GVPIILVGTKLDLRDDKQFFI 130 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~-~~p~ilv~nK~Dl~~~~~~~~ 130 (175)
|||++|..||++. ..|++.+.+.. + ++-++|||||.||.+.+++.+
T Consensus 101 VyDit~~~Sfe~t-~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~ 148 (221)
T KOG0094|consen 101 VYDITDRNSFENT-SKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSI 148 (221)
T ss_pred EEeccccchHHHH-HHHHHHHHhccCCCceEEEEEcccccccchhhhhH
Confidence 9999999999999 99999998876 3 477889999999999998443
No 10
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.98 E-value=2e-31 Score=195.43 Aligned_cols=122 Identities=66% Similarity=1.146 Sum_probs=111.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v 84 (175)
..+||+++|++|||||||+++|..+.|.+.+.||.++.+...+.+++..+.+++|||+|+++|+.++..+++++|++|+|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 35899999999999999999999999998999999888877777889999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 85 FSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
||++++.||+++...|...+.+..+++|++|||||+||.+.+
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~ 123 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDA 123 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcCh
Confidence 999999999999457998887766789999999999997654
No 11
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.97 E-value=2.7e-31 Score=198.47 Aligned_cols=144 Identities=33% Similarity=0.676 Sum_probs=124.2
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d 86 (175)
+||+|+|++|||||||+++|..+.|.+.+.||....+...+.+++..+.+.+|||+|++.|..+++.+++++|++++|||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfd 81 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFD 81 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEE
Confidence 79999999999999999999999999999999988888888889999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccchhhc--cCCCCccccccchhcc--Cccc
Q 030525 87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFI--DHPGAVPITTAQVDYK--HPVC 150 (175)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~--~~~~~~~vs~~~~~~~--~~~~ 150 (175)
+++++||+++...|...+....+++|++|||||+||.++..... ......|++.++++.+ ..+|
T Consensus 82 is~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~ 149 (222)
T cd04173 82 ISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGA 149 (222)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCC
Confidence 99999999997789988877778999999999999976533221 1223457888887665 4454
No 12
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=5.8e-31 Score=197.68 Aligned_cols=146 Identities=35% Similarity=0.621 Sum_probs=123.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v 84 (175)
..+||+++|++|||||||+++|..+.|.+++.||.+..+...+.+++..+.+++|||+|+++|..++..+++++|++++|
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV 91 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC 91 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence 46799999999999999999999999999999999888887888899999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccchhhcc--CCCCccccccchhcc--Cccc
Q 030525 85 FSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFID--HPGAVPITTAQVDYK--HPVC 150 (175)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~--~~~~~~vs~~~~~~~--~~~~ 150 (175)
||++++.||+++...|++.+.+..++.|++|||||+||.++.....+ .....+++.++++.+ ..+|
T Consensus 92 yDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~ 161 (232)
T cd04174 92 FDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGA 161 (232)
T ss_pred EECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCC
Confidence 99999999998548999999887778999999999999753221111 112346777777655 4444
No 13
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.97 E-value=7.6e-31 Score=189.83 Aligned_cols=141 Identities=56% Similarity=1.009 Sum_probs=119.1
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~ 85 (175)
.+||+++|++|||||||+++|..+.|.+++.||.+..+...+..++..+.+++||++|++++...+..+++++|++|+||
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 37999999999999999999999999889999998888777778888999999999999999999989999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccchhhcc--CCCCccccccchhcc
Q 030525 86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFID--HPGAVPITTAQVDYK 146 (175)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~--~~~~~~vs~~~~~~~ 146 (175)
|+++++||+++...|...+....+++|+++||||+|+.+....... ....++++.++++..
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~ 143 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKL 143 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHH
Confidence 9999999999845799988876678999999999999765432221 122345666666544
No 14
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.5e-31 Score=189.78 Aligned_cols=127 Identities=38% Similarity=0.637 Sum_probs=117.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
...+||+++|++|||||-|+.||..++|..+..+|++..+ +..+.++++.++.+||||+||++|+.....||++|.+++
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl 91 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 91 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeE
Confidence 3689999999999999999999999999999999997665 557889999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccchhhcc
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFID 131 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~ 131 (175)
+|||++.+.+|+++ ..|+++++... ++++++|||||+||.+.|.+..+
T Consensus 92 lVYDITr~~Tfenv-~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te 140 (222)
T KOG0087|consen 92 LVYDITRRQTFENV-ERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTE 140 (222)
T ss_pred EEEechhHHHHHHH-HHHHHHHHhcCCCCeEEEEeecchhhhhccccchh
Confidence 99999999999999 99999999887 79999999999999998775543
No 15
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.97 E-value=1.9e-30 Score=189.87 Aligned_cols=123 Identities=33% Similarity=0.600 Sum_probs=110.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
+..+||+++|+.|||||||+++|..+.+.+++.++....+ ...+..++..+.+++||++|+++|..++..+++++|+++
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 4679999999999999999999999999887777765554 445777888999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
+|||++++.||+++ +.|++++....+++|++|||||+|+.+.+.
T Consensus 84 lVfD~t~~~Sf~~~-~~w~~~i~~~~~~~piilVGNK~DL~~~~~ 127 (189)
T cd04121 84 LVYDITNRWSFDGI-DRWIKEIDEHAPGVPKILVGNRLHLAFKRQ 127 (189)
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccchhccC
Confidence 99999999999999 899999987778999999999999977654
No 16
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=2.8e-31 Score=180.99 Aligned_cols=126 Identities=33% Similarity=0.666 Sum_probs=117.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeE-EEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
..+|.+|+|++|||||||+.+|..+.|..+|..|++.++. +++.++|..++++|||++|+++|+.+...|+++.+++++
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v 86 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV 86 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence 4678999999999999999999999999999999977764 578899999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccchhhcc
Q 030525 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFID 131 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~ 131 (175)
|||+++.+||.+. +.|+.++++.++.+|-++||||.|.++.+.+..+
T Consensus 87 VYDVTn~ESF~Nv-~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~ 133 (198)
T KOG0079|consen 87 VYDVTNGESFNNV-KRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTE 133 (198)
T ss_pred EEECcchhhhHhH-HHHHHHHHhcCccccceecccCCCCccceeeehH
Confidence 9999999999999 9999999999999999999999999988775544
No 17
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.4e-30 Score=177.33 Aligned_cols=122 Identities=34% Similarity=0.691 Sum_probs=113.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEE-EEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
..+|++|+|++.||||||+.|+..+.|...+.+|.+..+.. ++...++.+++++|||.|+++|+.+...++++++++|+
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL 99 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence 35799999999999999999999999999999988777654 56667788999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccch
Q 030525 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
+||++|.+||..+ +.|...++.++ .++|+|+||||||+.++|-
T Consensus 100 myDitNeeSf~sv-qdw~tqIktysw~naqvilvgnKCDmd~eRv 143 (193)
T KOG0093|consen 100 MYDITNEESFNSV-QDWITQIKTYSWDNAQVILVGNKCDMDSERV 143 (193)
T ss_pred EEecCCHHHHHHH-HHHHHHheeeeccCceEEEEecccCCcccee
Confidence 9999999999999 99999999998 7999999999999999887
No 18
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.97 E-value=4.9e-30 Score=189.40 Aligned_cols=120 Identities=32% Similarity=0.641 Sum_probs=108.4
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~ 85 (175)
+.|+++|++|||||||+++|..+.|.+.+.+|.+..+ .+.+..++..+.+++|||+|+++|+.++..|++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 4799999999999999999999999988888876554 556788888999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccch
Q 030525 86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
|+++++||+++ +.|+..+.+.. +++|+++||||+|+.++++
T Consensus 81 Dvtd~~Sf~~l-~~w~~~i~~~~~~~~piilVgNK~DL~~~~~ 122 (202)
T cd04120 81 DITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDRE 122 (202)
T ss_pred ECcCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccc
Confidence 99999999999 88999888765 6899999999999976554
No 19
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.3e-30 Score=178.22 Aligned_cols=125 Identities=35% Similarity=0.657 Sum_probs=114.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
.-.+||+++|+.|||||+|+.||..+-|++....|++.++ .+++.+++.++++++|||+||++|++...+||+.||++|
T Consensus 5 kflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahali 84 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEE
Confidence 3578999999999999999999999999998888886654 678999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccchhh
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFF 129 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~ 129 (175)
++||++...||+-+ ..|+.+++++. .++-.|+||||+|+.+.|++.
T Consensus 85 lvydiscqpsfdcl-pewlreie~yan~kvlkilvgnk~d~~drrevp 131 (213)
T KOG0095|consen 85 LVYDISCQPSFDCL-PEWLREIEQYANNKVLKILVGNKIDLADRREVP 131 (213)
T ss_pred EEEecccCcchhhh-HHHHHHHHHHhhcceEEEeeccccchhhhhhhh
Confidence 99999999999999 99999999887 567779999999999888743
No 20
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.97 E-value=1.9e-29 Score=182.35 Aligned_cols=140 Identities=68% Similarity=1.114 Sum_probs=117.6
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d 86 (175)
+||+++|++|||||||+.+++.+.|.+++.|+....+...+..++..+.+++|||+|++++..++..+++++|++|+|||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 81 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFS 81 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEE
Confidence 79999999999999999999999999889998877777777788889999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccchhhc--cCCCCccccccchhcc
Q 030525 87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFI--DHPGAVPITTAQVDYK 146 (175)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~--~~~~~~~vs~~~~~~~ 146 (175)
+++++||+++...|+..+....++.|+++||||+|+.+.+.... ......+++.+++..+
T Consensus 82 ~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 143 (174)
T cd01871 82 LVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 143 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHH
Confidence 99999999985579988877667899999999999975432111 1122345666666544
No 21
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.97 E-value=2.3e-30 Score=182.39 Aligned_cols=121 Identities=35% Similarity=0.689 Sum_probs=111.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
...+||+++|++|||||||+++|.+.+|...+..|++..+ .+.+.+++..+.+++|||+||++|.++.-.+|+++|.++
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv 86 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV 86 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence 5689999999999999999999999999999999996664 678899999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC-C----CCcEEEEEeCCCCccc
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYA-P----GVPIILVGTKLDLRDD 125 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~----~~p~ilv~nK~Dl~~~ 125 (175)
++||++++.||+++ ..|.+++.... + .-|+||+|||+|+.+.
T Consensus 87 lvydv~~~~Sfe~L-~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~ 133 (210)
T KOG0394|consen 87 LVYDVNNPKSFENL-ENWRKEFLIQASPQDPETFPFVILGNKIDVDGG 133 (210)
T ss_pred EEeecCChhhhccH-HHHHHHHHHhcCCCCCCcccEEEEcccccCCCC
Confidence 99999999999999 99999876554 2 5799999999999774
No 22
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.97 E-value=1.2e-30 Score=188.59 Aligned_cols=156 Identities=62% Similarity=1.007 Sum_probs=138.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEEC-CeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
...+|++|+|+.++|||+|+..+..+.|++.+.||..+.+...+.++ ++.+.+.+|||+||++|..+++..|.++|+++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 45789999999999999999999999999999999999999999995 99999999999999999999988999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccchh--hccCCCCccccccchhcc--CcccHHHHhhhH
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF--FIDHPGAVPITTAQVDYK--HPVCVYYFALLF 158 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~vs~~~~~~~--~~~~~~~~~~~~ 158 (175)
+||++.++.||+++...|+.++.+.++++|+||||+|.||.++... ...+....+++.+++... .+++..|++...
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa 161 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSA 161 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehh
Confidence 9999999999999999999999999999999999999999965433 334557789999999866 666666655443
Q ss_pred h
Q 030525 159 F 159 (175)
Q Consensus 159 ~ 159 (175)
+
T Consensus 162 ~ 162 (198)
T KOG0393|consen 162 L 162 (198)
T ss_pred h
Confidence 3
No 23
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.97 E-value=7.7e-30 Score=184.06 Aligned_cols=121 Identities=28% Similarity=0.549 Sum_probs=109.6
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~ 85 (175)
.+||+++|++|||||||++++..+.|...+.|+.+..+...+.+++..+.+++||++|+++++.++..+++++|++++||
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 57999999999999999999999999888888888778777888998999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCcccch
Q 030525 86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~ 127 (175)
|++++.||+.+ ..|...+.+.. +++|+++||||+|+.+.++
T Consensus 82 d~~~~~Sf~~~-~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~ 124 (172)
T cd04141 82 SVTDRHSFQEA-SEFKKLITRVRLTEDIPLVLVGNKVDLESQRQ 124 (172)
T ss_pred ECCchhHHHHH-HHHHHHHHHhcCCCCCCEEEEEEChhhhhcCc
Confidence 99999999999 77888777643 5799999999999976554
No 24
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.96 E-value=1.1e-28 Score=180.46 Aligned_cols=121 Identities=50% Similarity=0.872 Sum_probs=109.8
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d 86 (175)
.||+++|++|||||||+++|..+.+...+.|+....+...+..++..+.+++||++|++++..++..+++++|++|+|||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 38999999999999999999999998888888877777777788888999999999999999999899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
++++.||+.+...|+..+....++.|+++||||+|+.+.+.
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~ 121 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARN 121 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChh
Confidence 99999999985579999887667899999999999987654
No 25
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.96 E-value=1.5e-28 Score=176.02 Aligned_cols=121 Identities=31% Similarity=0.663 Sum_probs=107.4
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeE-EEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v 84 (175)
.+||+++|++|||||||++++..+.+.+.+.++....+. ..+..++..+++++||+||++++...+..+++++|++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 489999999999999999999999998888777765553 4567788889999999999999999888999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccch
Q 030525 85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
||++++.||+.+ ..|+..+.... ++.|+++||||+|+.+++.
T Consensus 82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~ 124 (166)
T cd04122 82 YDITRRSTYNHL-SSWLTDARNLTNPNTVIFLIGNKADLEAQRD 124 (166)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccC
Confidence 999999999999 89998887665 6799999999999976654
No 26
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.96 E-value=1.9e-28 Score=174.33 Aligned_cols=120 Identities=31% Similarity=0.619 Sum_probs=108.0
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d 86 (175)
+||+++|++|||||||++++..+.+...+.++..+.+.+.+..++..+.+++|||||++++..++..+++++|++++|||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYS 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEE
Confidence 79999999999999999999999998888888877777778888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCcccch
Q 030525 87 LISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~ 127 (175)
++++.+++.+ ..|...+.+.. ++.|+++|+||+|+.+.+.
T Consensus 82 ~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~ 123 (163)
T cd04136 82 ITSQSSFNDL-QDLREQILRVKDTENVPMVLVGNKCDLEDERV 123 (163)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccce
Confidence 9999999998 88888887643 5799999999999976443
No 27
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.96 E-value=3.1e-28 Score=175.29 Aligned_cols=118 Identities=71% Similarity=1.240 Sum_probs=107.8
Q ss_pred EEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECC
Q 030525 9 CVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI 88 (175)
Q Consensus 9 i~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~ 88 (175)
|+|+|++|||||||+++|..+.+...+.++....+...+..++..+.+++|||||++++..++..+++++|++++|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 58999999999999999999999888888888877777888888999999999999999999989999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 89 SKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 89 ~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
+++||+++...|+..+....++.|+++||||+|+.+++
T Consensus 81 ~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~ 118 (174)
T smart00174 81 SPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDK 118 (174)
T ss_pred CHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhCh
Confidence 99999998567999998777899999999999997643
No 28
>PTZ00369 Ras-like protein; Provisional
Probab=99.96 E-value=2.7e-28 Score=178.41 Aligned_cols=125 Identities=36% Similarity=0.615 Sum_probs=112.2
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 030525 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (175)
Q Consensus 1 m~~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 80 (175)
|+ ...+||+++|++|||||||++++..+.+...+.++.+..+.+.+.+++..+.+++|||||++++..++..+++++|+
T Consensus 1 ~~-~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ 79 (189)
T PTZ00369 1 MA-STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQG 79 (189)
T ss_pred CC-CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCE
Confidence 44 56799999999999999999999999998888888888888888889999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCcccch
Q 030525 81 FILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 81 vi~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~ 127 (175)
+++|||++++++|+.+ ..|...+.+.. +++|+++|+||+|+.+.+.
T Consensus 80 iilv~D~s~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~ 127 (189)
T PTZ00369 80 FLCVYSITSRSSFEEI-ASFREQILRVKDKDRVPMILVGNKCDLDSERQ 127 (189)
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc
Confidence 9999999999999999 88988887654 4899999999999976543
No 29
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=2.6e-28 Score=179.99 Aligned_cols=120 Identities=26% Similarity=0.415 Sum_probs=104.1
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeE-EEEEEC-----CeEEEEEEEeCCCcccccccccccccCccE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVD-----GSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~-----~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 80 (175)
+||+++|++|||||||++++..+.|.+.+.+|.+..+. +.+..+ +..+.+++||++|+++|..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 58999999999999999999999998888888765443 334442 567899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhc-------------------C-CCCcEEEEEeCCCCcccch
Q 030525 81 FILAFSLISKASYENVAKKWIPELRHY-------------------A-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 81 vi~v~d~~~~~s~~~~~~~~~~~~~~~-------------------~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
+|+|||++++.||+++ ..|+.++.+. . +++|++|||||+|+.+++.
T Consensus 81 iIlVyDvtn~~Sf~~l-~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~ 146 (202)
T cd04102 81 IILVHDLTNRKSSQNL-QRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKE 146 (202)
T ss_pred EEEEEECcChHHHHHH-HHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcc
Confidence 9999999999999999 8999988653 1 4799999999999987654
No 30
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.96 E-value=3.5e-28 Score=177.21 Aligned_cols=120 Identities=53% Similarity=1.039 Sum_probs=106.9
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEEC-CeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~ 85 (175)
+||+++|++|||||||+++|.++.+...+.++....+...+... +..+.+++|||||++++..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 58999999999999999999999998888888877776666665 77889999999999999988888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
|++++.||+++...|+..+....++.|+++||||.|+.+.+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 121 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDK 121 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCc
Confidence 99999999998567998887666789999999999997543
No 31
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.96 E-value=3.3e-28 Score=173.63 Aligned_cols=120 Identities=37% Similarity=0.713 Sum_probs=107.1
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~ 85 (175)
+||+++|++|||||||++++.++.+.+.+.++.+..+ .+.+..++..+.+++||++|++++...+..+++++|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 5899999999999999999999999888888876554 456778888899999999999999998889999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccch
Q 030525 86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
|++++.||+.+ ..|++.+.... .+.|+++||||.|+.+.++
T Consensus 81 d~~~~~sf~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~ 122 (161)
T cd04117 81 DISSERSYQHI-MKWVSDVDEYAPEGVQKILIGNKADEEQKRQ 122 (161)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccC
Confidence 99999999999 88999887665 4799999999999976654
No 32
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.96 E-value=7.7e-28 Score=173.51 Aligned_cols=119 Identities=59% Similarity=1.091 Sum_probs=108.1
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d 86 (175)
+|++++|++|||||||++++.++.|..++.+|..+.+...+..++..+.+++||+||++++...+..+++++|++|+|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 58999999999999999999999999888888877777778888888999999999999999999899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
++++.+|+++.+.|+..+....++.|+++||||+|+.+.
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 119 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTD 119 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccC
Confidence 999999999856799888866568999999999999654
No 33
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.96 E-value=4.7e-28 Score=172.92 Aligned_cols=121 Identities=31% Similarity=0.598 Sum_probs=108.3
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~ 85 (175)
.+||+++|++|||||||+++++.+.+.+.+.+++...+...+..++..+.+++|||||++++..++..+++++|++++||
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 37999999999999999999999999888888888777777888888999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCcccch
Q 030525 86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~ 127 (175)
|++++.+|+.+ ..|...+.+.. ++.|+++|+||+|+.+.+.
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~ 123 (164)
T cd04175 81 SITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDERV 123 (164)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCcchhccE
Confidence 99999999998 77888776543 6899999999999976543
No 34
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.96 E-value=6.7e-28 Score=171.87 Aligned_cols=120 Identities=33% Similarity=0.606 Sum_probs=107.5
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~ 85 (175)
.+||+++|++|||||||++++..+.+.+.+.++..+.+...+..++..+.+++||+||++++..++..+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 37999999999999999999999999888888877666777888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCcccc
Q 030525 86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~ 126 (175)
|++++.||+++ ..|...+.+.. .+.|+++|+||+|+.+.+
T Consensus 81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~ 122 (163)
T cd04176 81 SLVNQQTFQDI-KPMRDQIVRVKGYEKVPIILVGNKVDLESER 122 (163)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccchhcC
Confidence 99999999998 88888887653 589999999999996543
No 35
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=9.9e-28 Score=177.03 Aligned_cols=118 Identities=32% Similarity=0.584 Sum_probs=104.3
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEEC-CeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v 84 (175)
+||+++|++|||||||+++|.++.+...+.+|.+..+ ...+..+ +..+.+++|||+|++++..++..+++++|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 5899999999999999999999999888888886554 4456666 7889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhc-----CCCCcEEEEEeCCCCccc
Q 030525 85 FSLISKASYENVAKKWIPELRHY-----APGVPIILVGTKLDLRDD 125 (175)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~-----~~~~p~ilv~nK~Dl~~~ 125 (175)
||++++.||+.+ ..|+..+... ..++|++|||||+|+.+.
T Consensus 81 ~D~t~~~s~~~~-~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~ 125 (201)
T cd04107 81 FDVTRPSTFEAV-LKWKADLDSKVTLPNGEPIPCLLLANKCDLKKR 125 (201)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhhcccCCCCCcEEEEEECCCcccc
Confidence 999999999999 8898887643 257899999999999753
No 36
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.96 E-value=4.5e-28 Score=172.50 Aligned_cols=119 Identities=45% Similarity=0.919 Sum_probs=110.3
Q ss_pred EEEEECCCCCCHHHHHHHhhcCCCCCCCCCCe-eeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d 86 (175)
||+++|++|||||||+++|.++.+.+.+.++. .+.....+..++..+.+++||++|++++...+..+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999999999988 66667788899999999999999999998888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCC-CCcEEEEEeCCCCcccch
Q 030525 87 LISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~ 127 (175)
+++++||+++ ..|++.+....+ +.|++|||||+|+.+.+.
T Consensus 81 ~~~~~S~~~~-~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~ 121 (162)
T PF00071_consen 81 VTDEESFENL-KKWLEEIQKYKPEDIPIIVVGNKSDLSDERE 121 (162)
T ss_dssp TTBHHHHHTH-HHHHHHHHHHSTTTSEEEEEEETTTGGGGSS
T ss_pred cccccccccc-ccccccccccccccccceeeecccccccccc
Confidence 9999999999 899999998886 799999999999988554
No 37
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.2e-28 Score=169.02 Aligned_cols=125 Identities=33% Similarity=0.639 Sum_probs=115.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEE-EEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
..+|++++|++|.|||+|+++|+..+|.++..-|.+..+.. .+.+.++.+++++|||+||++|++..+.||++|-+.++
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlL 87 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALL 87 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEE
Confidence 57899999999999999999999999999888888777655 56678999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccchhhc
Q 030525 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFI 130 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~ 130 (175)
|||+++++||+.+ ..|+..++... +++-++++|||.||.++|++..
T Consensus 88 VYD~TsrdsfnaL-tnWL~DaR~lAs~nIvviL~GnKkDL~~~R~Vtf 134 (214)
T KOG0086|consen 88 VYDITSRDSFNAL-TNWLTDARTLASPNIVVILCGNKKDLDPEREVTF 134 (214)
T ss_pred EEeccchhhHHHH-HHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhH
Confidence 9999999999999 99999998877 6899999999999999988544
No 38
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.95 E-value=1.4e-27 Score=178.49 Aligned_cols=120 Identities=30% Similarity=0.545 Sum_probs=108.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeee-eEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
...+||+++|++|||||||+++++.+.+...+.+|.+.. ....+..++..+++++|||+|+++|..++..+++++|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 467899999999999999999999999988888888644 4445667777899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcc
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 124 (175)
+|||++++.||+++ ..|+..+.+..++.|+++||||+|+.+
T Consensus 91 lvfD~~~~~s~~~i-~~w~~~i~~~~~~~piilvgNK~Dl~~ 131 (219)
T PLN03071 91 IMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131 (219)
T ss_pred EEEeCCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEEchhhhh
Confidence 99999999999999 899999987778899999999999964
No 39
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.95 E-value=1.3e-27 Score=172.01 Aligned_cols=139 Identities=55% Similarity=1.037 Sum_probs=115.5
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d 86 (175)
+||+++|++|+|||||+++|..+.+.+.+.++..+.+...+..++..+.+++||++|++++...+..+++++|++++|||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 58999999999999999999999998888888877777777788888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccchhh--ccCCCCccccccchhc
Q 030525 87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQVDY 145 (175)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~--~~~~~~~~vs~~~~~~ 145 (175)
++++.+|+.+...|...+....++.|+++||||+|+.+..... .......+++.+++..
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 141 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQK 141 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHH
Confidence 9999999998667988887666789999999999997543221 1122233455555543
No 40
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.95 E-value=5.5e-28 Score=176.95 Aligned_cols=119 Identities=39% Similarity=0.654 Sum_probs=106.2
Q ss_pred EEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~ 87 (175)
||+++|++|||||||+++|..+.|...+.++.++.+...+..++..+.+++|||+|++++..++..+++++|++++|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 68999999999999999999999988888888777777777888889999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCcccch
Q 030525 88 ISKASYENVAKKWIPELRHYA----PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~ 127 (175)
+++.||+.+ ..|+..+.... .+.|+++||||+|+.+.+.
T Consensus 81 ~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~ 123 (190)
T cd04144 81 TSRSTFERV-ERFREQIQRVKDESAADVPIMIVGNKCDKVYERE 123 (190)
T ss_pred CCHHHHHHH-HHHHHHHHHHhcccCCCCCEEEEEEChhccccCc
Confidence 999999998 88888776543 4789999999999976544
No 41
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.95 E-value=1e-27 Score=171.53 Aligned_cols=120 Identities=28% Similarity=0.525 Sum_probs=105.6
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d 86 (175)
+||+++|++|||||||+++++++.+...+.|+....+...+..++..+.+++|||+|++++..++..+++++|++++|||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 79999999999999999999999998888888877777767777888999999999999998888888999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCcccch
Q 030525 87 LISKASYENVAKKWIPELRHYA----PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~ 127 (175)
++++++++++ ..|...+.+.. +++|+++|+||+|+.+.+.
T Consensus 82 ~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~ 125 (165)
T cd04140 82 VTSKQSLEEL-KPIYELICEIKGNNIEKIPIMLVGNKCDESHKRE 125 (165)
T ss_pred CCCHHHHHHH-HHHHHHHHHHhcCCCCCCCEEEEEECccccccCe
Confidence 9999999998 78887776542 5799999999999976443
No 42
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.95 E-value=2.9e-27 Score=168.67 Aligned_cols=117 Identities=33% Similarity=0.647 Sum_probs=104.2
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeee-eEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~ 85 (175)
+||+++|++|||||||++++..+.+.+.+.++.... +......++..+.+++|||+|+++|..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999999988777776433 4455667888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcc
Q 030525 86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (175)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 124 (175)
|++++.+++++ ..|+..+.+..++.|+++|+||+|+.+
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~p~ivv~nK~Dl~~ 118 (161)
T cd04124 81 DVTRKITYKNL-SKWYEELREYRPEIPCIVVANKIDLDP 118 (161)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEECccCch
Confidence 99999999998 899999987667899999999999853
No 43
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.95 E-value=2.2e-27 Score=170.17 Aligned_cols=122 Identities=31% Similarity=0.699 Sum_probs=108.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
..+||+++|++|||||||++++.++.|.+.+.++....+ ...+..++..+.+++||+||++++...+..+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 468999999999999999999999999888888876554 3466778888999999999999998888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccch
Q 030525 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
|||++++.+|+.+ ..|+..+.+.. .+.|+++||||+|+.+.++
T Consensus 82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~ 125 (167)
T cd01867 82 VYDITDEKSFENI-RNWMRNIEEHASEDVERMLVGNKCDMEEKRV 125 (167)
T ss_pred EEECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEECcccccccC
Confidence 9999999999999 78999888765 5799999999999986543
No 44
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.95 E-value=2.4e-27 Score=168.19 Aligned_cols=118 Identities=36% Similarity=0.640 Sum_probs=106.7
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~ 85 (175)
.+||+++|++|||||||+++|.++.+...+.|+..+.+.+.+..++..+.+++||++|++++..++..+++++|++++||
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 36999999999999999999999999888888888777777788888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCcc
Q 030525 86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRD 124 (175)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~ 124 (175)
|++++.+++++ ..|...+.+.. .+.|+++|+||+|+.+
T Consensus 81 ~~~~~~s~~~~-~~~~~~i~~~~~~~~~piivv~nK~Dl~~ 120 (162)
T cd04138 81 AINSRKSFEDI-HTYREQIKRVKDSDDVPMVLVGNKCDLAA 120 (162)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 99999999998 77888777653 4799999999999965
No 45
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.95 E-value=3e-27 Score=169.10 Aligned_cols=120 Identities=35% Similarity=0.702 Sum_probs=106.2
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~ 85 (175)
+||+++|++|||||||++++.++++...+.++.+..+ ...+..++..+.+++||++|++++...+..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 7999999999999999999999999888888776544 345666778899999999999999988889999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccch
Q 030525 86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
|++++.+++.+ ..|+..+.+.. .+.|+++|+||+|+.+.+.
T Consensus 82 d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 123 (165)
T cd01865 82 DITNEESFNAV-QDWSTQIKTYSWDNAQVILVGNKCDMEDERV 123 (165)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCCEEEEEECcccCcccc
Confidence 99999999999 88999988765 5799999999999976553
No 46
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.95 E-value=2.7e-27 Score=170.46 Aligned_cols=118 Identities=36% Similarity=0.637 Sum_probs=104.8
Q ss_pred EEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeE-EEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d 86 (175)
||+++|++|||||||+++|+.+.|.+.+.|+.+..+. ..+..++..+.+++|||||+++|..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 8999999999999999999999999999999876654 567788888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCcccc
Q 030525 87 LISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~ 126 (175)
++++++++.+ ..|++.+.+.. .+.|+++|+||.|+.+.+
T Consensus 82 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~ 122 (170)
T cd04108 82 LTDVASLEHT-RQWLEDALKENDPSSVLLFLVGTKKDLSSPA 122 (170)
T ss_pred CcCHHHHHHH-HHHHHHHHHhcCCCCCeEEEEEEChhcCccc
Confidence 9999999998 88998875543 357899999999996543
No 47
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.95 E-value=2.2e-27 Score=168.83 Aligned_cols=120 Identities=36% Similarity=0.677 Sum_probs=106.2
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEEC--CeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD--GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
+||+++|++|||||||++++..+.+.+.+.++....+ ...+..+ +..+++++||+||++++...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 5899999999999999999999999888888876555 4455555 778999999999999999998899999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
|||++++++++.+ ..|+..+.+...++|+++|+||+|+.+++.
T Consensus 81 v~d~~~~~s~~~l-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~ 123 (162)
T cd04106 81 VFSTTDRESFEAI-ESWKEKVEAECGDIPMVLVQTKIDLLDQAV 123 (162)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEEChhcccccC
Confidence 9999999999998 889998887677899999999999976544
No 48
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.95 E-value=2e-27 Score=169.50 Aligned_cols=120 Identities=34% Similarity=0.653 Sum_probs=106.9
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d 86 (175)
+||+++|++|||||||++++.++.+...+.++..+.+.+....++..+.+++|||||++++..++..+++++|++++|||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 58999999999999999999999998888888877777777888888999999999999999998899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCcccch
Q 030525 87 LISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~ 127 (175)
++++++++++ ..|...+.+.. .+.|+++|+||+|+.+++.
T Consensus 81 ~~~~~s~~~~-~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~ 122 (164)
T smart00173 81 ITDRQSFEEI-KKFREQILRVKDRDDVPIVLVGNKCDLESERV 122 (164)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccce
Confidence 9999999998 78887776543 4789999999999976543
No 49
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.95 E-value=5.7e-27 Score=168.09 Aligned_cols=116 Identities=33% Similarity=0.613 Sum_probs=104.2
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~ 85 (175)
+||+++|++|||||||+++++.+.+...+.++.+... ...+..++..+.+.+|||+|++++...+..++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 5899999999999999999999998888888875443 445566778899999999999999888888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCc
Q 030525 86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 123 (175)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 123 (175)
|++++.+++.+ +.|++.+.+...++|+++||||+|+.
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~piiiv~nK~Dl~ 117 (166)
T cd00877 81 DVTSRVTYKNV-PNWHRDLVRVCGNIPIVLCGNKVDIK 117 (166)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEEchhcc
Confidence 99999999999 88999998877789999999999997
No 50
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.95 E-value=2.8e-27 Score=171.30 Aligned_cols=123 Identities=40% Similarity=0.694 Sum_probs=105.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeE-EEEEEC----------CeEEEEEEEeCCCccccccccc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVD----------GSTVNLGLWDTAGQEDYNRLRP 72 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~----------~~~~~~~~~D~~G~~~~~~~~~ 72 (175)
+..+||+++|++|||||||++++.++.+.+.+.++....+. ..+... +..+.+++||+||++++...+.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 35689999999999999999999999998888888765443 334332 4568899999999999999988
Q ss_pred ccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCcccch
Q 030525 73 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 73 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~ 127 (175)
.+++++|++++|||+++++||.++ ..|+..+.... ++.|+++||||+|+.+.+.
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~ 137 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNV-RNWMSQLQTHAYCENPDIVLCGNKADLEDQRQ 137 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEeCccchhcCc
Confidence 999999999999999999999999 88999887643 5799999999999976544
No 51
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.95 E-value=4.3e-27 Score=167.51 Aligned_cols=120 Identities=36% Similarity=0.626 Sum_probs=107.3
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~ 85 (175)
.+||+++|++|||||||+++++.+.+...+.++..+.+.....+++..+.+++|||||++++..++..+++++|++++||
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 58999999999999999999999998888888887777777778888899999999999999999989999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCcccc
Q 030525 86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~ 126 (175)
|++++.+++.+ ..|...+.+.. .+.|+++|+||+|+.+.+
T Consensus 82 d~~~~~s~~~~-~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~ 123 (164)
T cd04145 82 SVTDRGSFEEV-DKFHTQILRVKDRDEFPMILVGNKADLEHQR 123 (164)
T ss_pred ECCCHHHHHHH-HHHHHHHHHHhCCCCCCEEEEeeCccccccc
Confidence 99999999998 78888877643 579999999999997654
No 52
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.95 E-value=5.1e-27 Score=170.86 Aligned_cols=116 Identities=31% Similarity=0.670 Sum_probs=103.8
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~ 85 (175)
+||+++|++|||||||+++|..+.|.+++.||.+..+ .+.+..++..+.+++||++|+++|..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 5899999999999999999999999988899886554 457788888999999999999999999989999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcc
Q 030525 86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124 (175)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~ 124 (175)
|++++.||+++ ..|+..+.+.. ...| ++||||+|+.+
T Consensus 81 D~t~~~s~~~i-~~~~~~~~~~~~~~~p-ilVgnK~Dl~~ 118 (182)
T cd04128 81 DLTRKSTLNSI-KEWYRQARGFNKTAIP-ILVGTKYDLFA 118 (182)
T ss_pred ECcCHHHHHHH-HHHHHHHHHhCCCCCE-EEEEEchhccc
Confidence 99999999999 88999887765 3566 68899999963
No 53
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.95 E-value=1.9e-28 Score=169.01 Aligned_cols=126 Identities=34% Similarity=0.682 Sum_probs=113.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
...||++++|..-||||||+-||+.++|.....+|....+ .+.+.+.+....+.||||+||++|..+-+.||+++++++
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGal 90 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGAL 90 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceE
Confidence 4578999999999999999999999999988887775554 456777778899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccchhhc
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFI 130 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~ 130 (175)
+|||++|+.||+.+ +.|..+++... ..+.+++||||+||+++|++..
T Consensus 91 LVyDITDrdSFqKV-KnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~ 138 (218)
T KOG0088|consen 91 LVYDITDRDSFQKV-KNWVLELRTMLGNEIELLIVGNKIDLEEERQVTR 138 (218)
T ss_pred EEEeccchHHHHHH-HHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhH
Confidence 99999999999999 99999999876 6789999999999999998544
No 54
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.95 E-value=5.8e-27 Score=172.75 Aligned_cols=123 Identities=33% Similarity=0.644 Sum_probs=109.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
+..+||+++|++|||||||+++|.++.+.+.+.+|.+..+ ...+..++..+.+.+||+||++.+...+..+++++|+++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 4679999999999999999999999999887788876444 456677888889999999999999988899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
+|||++++++|+.+ ..|+..+....++.|+++||||+|+.+.+.
T Consensus 84 lv~D~~~~~s~~~~-~~~~~~i~~~~~~~piivVgNK~Dl~~~~~ 127 (199)
T cd04110 84 VVYDVTNGESFVNV-KRWLQEIEQNCDDVCKVLVGNKNDDPERKV 127 (199)
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccccccc
Confidence 99999999999999 889999887777899999999999976543
No 55
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=5.7e-27 Score=167.53 Aligned_cols=122 Identities=33% Similarity=0.650 Sum_probs=106.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeee-eEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
..+||+++|++|||||||++++..+.+.+.+.++.... ....+..++..+.+++||+||++++...+..+++++|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999999887777776544 34567778888899999999999998888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccch
Q 030525 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
|||++++.+++.+ ..|+..+.... .++|+++|+||+|+.+.+.
T Consensus 82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 125 (165)
T cd01864 82 AYDITRRSSFESV-PHWIEEVEKYGASNVVLLLIGNKCDLEEQRE 125 (165)
T ss_pred EEECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEECcccccccc
Confidence 9999999999998 89999887755 5899999999999976543
No 56
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.95 E-value=3.8e-27 Score=169.45 Aligned_cols=121 Identities=34% Similarity=0.657 Sum_probs=105.4
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCccccc-ccccccccCccEEEE
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYN-RLRPLSYRGADVFIL 83 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~-~~~~~~~~~~d~vi~ 83 (175)
.+||+++|++|||||||+++++.+.+...+.++....+ ...+..++..+.+++||++|+++++ .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 58999999999999999999999998877777775443 4567778888999999999999886 467788999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCcccch
Q 030525 84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~ 127 (175)
|||++++.+++.+ ..|+..+.... .++|+++|+||+|+.+.++
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~ 126 (170)
T cd04115 82 VYDVTNMASFHSL-PSWIEECEQHSLPNEVPRILVGNKCDLREQIQ 126 (170)
T ss_pred EEECCCHHHHHhH-HHHHHHHHHhcCCCCCCEEEEEECccchhhcC
Confidence 9999999999999 88998887654 5799999999999976654
No 57
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.95 E-value=6.1e-27 Score=167.45 Aligned_cols=121 Identities=36% Similarity=0.769 Sum_probs=106.6
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v 84 (175)
.+||+++|++|||||||++++.++.+...+.++....+ ...+..++..+.+++||+||++++...+..+++++|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 58999999999999999999999998877777775444 45667788889999999999999988888999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccch
Q 030525 85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
||+++++||+++ ..|+..+.+.. ++.|+++|+||+|+.+.+.
T Consensus 82 ~d~~~~~s~~~l-~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~ 124 (166)
T cd01869 82 YDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTDKRV 124 (166)
T ss_pred EECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEEChhcccccC
Confidence 999999999999 88999988766 6799999999999976543
No 58
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.95 E-value=5e-27 Score=172.57 Aligned_cols=139 Identities=42% Similarity=0.650 Sum_probs=105.6
Q ss_pred eeEEEEECCCCCCHHHHHH-HhhcC-----CCCCCCCCCee--eeeEEE--------EEECCeEEEEEEEeCCCcccccc
Q 030525 6 FIKCVTVGDGAVGKTCMLI-SYTSN-----TFPTDYVPTVF--DNFSAN--------VVVDGSTVNLGLWDTAGQEDYNR 69 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~-~l~~~-----~~~~~~~~t~~--~~~~~~--------~~~~~~~~~~~~~D~~G~~~~~~ 69 (175)
.+||+++|++|||||||+. ++.++ .+.+++.||.+ +.+... +.+++..+.+++|||+|+++ .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999996 66554 34566778874 334332 25688899999999999975 3
Q ss_pred cccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccchhhc---------cCCCCccccc
Q 030525 70 LRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFI---------DHPGAVPITT 140 (175)
Q Consensus 70 ~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~---------~~~~~~~vs~ 140 (175)
....+++++|++++|||++++.||+++...|...+.+..++.|+++||||+||.+...... .....++++.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~ 159 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP 159 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence 4567899999999999999999999984469999887777899999999999975321100 0112356777
Q ss_pred cchhcc
Q 030525 141 AQVDYK 146 (175)
Q Consensus 141 ~~~~~~ 146 (175)
++++.+
T Consensus 160 ~e~~~~ 165 (195)
T cd01873 160 ETGRAV 165 (195)
T ss_pred HHHHHH
Confidence 777765
No 59
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.95 E-value=5.7e-27 Score=167.15 Aligned_cols=117 Identities=24% Similarity=0.608 Sum_probs=104.8
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~ 85 (175)
+||+++|++|||||||+++++++.+.+.+.++....+ .+.+..++..+.+++|||||++++..++..+++++|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999999888888876554 456777888999999999999999888888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC------CCCcEEEEEeCCCCcc
Q 030525 86 SLISKASYENVAKKWIPELRHYA------PGVPIILVGTKLDLRD 124 (175)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~------~~~p~ilv~nK~Dl~~ 124 (175)
|++++.+++.+ ..|+..+.+.. .+.|+++|+||+|+.+
T Consensus 81 D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 124 (168)
T cd04119 81 DVTDRQSFEAL-DSWLKEMKQEGGPHGNMENIVVVVCANKIDLTK 124 (168)
T ss_pred ECCCHHHHHhH-HHHHHHHHHhccccccCCCceEEEEEEchhccc
Confidence 99999999998 88999887654 3689999999999974
No 60
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.95 E-value=1.8e-27 Score=174.54 Aligned_cols=136 Identities=35% Similarity=0.602 Sum_probs=121.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v 84 (175)
...||+++|.+|||||+|+.+|..+.|.+.+.||.++.+.+.+.+++..+.+.|+||+|++++..+...+++++|++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhc-C-CCCcEEEEEeCCCCcccchhhccCCCCccccccchhcc--CcccH
Q 030525 85 FSLISKASYENVAKKWIPELRHY-A-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQVDYK--HPVCV 151 (175)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~-~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~vs~~~~~~~--~~~~~ 151 (175)
|+++|+.||+.+ ..+...+.+. . .++|+++||||+|+.+.|. |+.++|++. ...|.
T Consensus 82 ysitd~~SF~~~-~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~----------V~~eeg~~la~~~~~~ 141 (196)
T KOG0395|consen 82 YSITDRSSFEEA-KQLREQILRVKGRDDVPIILVGNKCDLERERQ----------VSEEEGKALARSWGCA 141 (196)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhhCcCCCCEEEEEEcccchhccc----------cCHHHHHHHHHhcCCc
Confidence 999999999999 7777777443 2 5789999999999998877 666666544 45555
No 61
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.95 E-value=6.9e-27 Score=174.30 Aligned_cols=120 Identities=31% Similarity=0.536 Sum_probs=104.6
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeee-eEEEEEECC-eEEEEEEEeCCCcccccccccccccCccEEEEE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDG-STVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~-~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v 84 (175)
+||+++|++|||||||+++|.++.+...+.+|.+.+ +...+..++ ..+.+++||++|++.+..++..+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 589999999999999999999999988888888644 455666654 578999999999999998998999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCcccch
Q 030525 85 FSLISKASYENVAKKWIPELRHYA----PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~ 127 (175)
||+++++||+++ +.|...+.+.. .++|+++|+||+|+.+.+.
T Consensus 81 ~D~t~~~s~~~~-~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~ 126 (215)
T cd04109 81 YDVTNSQSFENL-EDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRT 126 (215)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhccccCCCceEEEEEECcccccccc
Confidence 999999999999 88999888764 2478999999999976544
No 62
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.95 E-value=6.3e-27 Score=177.72 Aligned_cols=119 Identities=29% Similarity=0.484 Sum_probs=106.2
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d 86 (175)
+||+++|++|||||||+++|+++.|...+.+|..+.+.+.+.+++..+.+++|||+|++.|..++..++.++|++|+|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 58999999999999999999999998888888877777778889999999999999999998888888999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhc----------CCCCcEEEEEeCCCCcccc
Q 030525 87 LISKASYENVAKKWIPELRHY----------APGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~----------~~~~p~ilv~nK~Dl~~~~ 126 (175)
+++++||+++ ..|..++... ..+.|+++|+||+|+.+.+
T Consensus 81 v~~~~Sf~~i-~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~ 129 (247)
T cd04143 81 LDNRESFEEV-CRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPR 129 (247)
T ss_pred CCCHHHHHHH-HHHHHHHHHhhcccccccccCCCCcEEEEEECccchhcc
Confidence 9999999998 8888887543 2479999999999997644
No 63
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.95 E-value=2e-26 Score=166.02 Aligned_cols=119 Identities=60% Similarity=1.086 Sum_probs=107.6
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d 86 (175)
.||+++|++|||||||+++|.++.+.+.+.|+....+...+..++..+.+.+|||+|++++...+..+++++|++++|||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~ 81 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 81 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence 58999999999999999999999998888888877776777788888999999999999998888888999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
++++++|+++...|...+.+..++.|+++|+||+|+.+.
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 120 (175)
T cd01870 82 IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 120 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccC
Confidence 999999999866799888876678999999999998754
No 64
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=1.2e-26 Score=169.36 Aligned_cols=120 Identities=34% Similarity=0.628 Sum_probs=106.1
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~ 85 (175)
+||+++|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+++||++|++++...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 5899999999999999999999999877788876554 456777888899999999999999988899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccch
Q 030525 86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
|++++++|+++ ..|+..+.+.. .+.|+++||||+|+.+.+.
T Consensus 81 d~~~~~s~~~i-~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~ 122 (188)
T cd04125 81 DVTDQESFENL-KFWINEINRYARENVIKVIVANKSDLVNNKV 122 (188)
T ss_pred ECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECCCCccccc
Confidence 99999999999 77999988765 5789999999999976543
No 65
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.95 E-value=5.6e-27 Score=167.55 Aligned_cols=119 Identities=31% Similarity=0.549 Sum_probs=102.7
Q ss_pred EEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccc-cccccccccCccEEEEEEE
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-NRLRPLSYRGADVFILAFS 86 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-~~~~~~~~~~~d~vi~v~d 86 (175)
||+++|++|||||||+++++.+.+...+.++....+...+..++..+.+++||+||++++ ......+++++|++++|||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 689999999999999999999998888888876667777788888999999999999853 4455678999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCcccch
Q 030525 87 LISKASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~ 127 (175)
++++.||+.+ +.|...+.... .+.|+++||||+|+.+.+.
T Consensus 81 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 123 (165)
T cd04146 81 ITDRSSFDEI-SQLKQLIREIKKRDREIPVILVGNKADLLHYRQ 123 (165)
T ss_pred CCCHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECCchHHhCc
Confidence 9999999999 88988887653 4899999999999976543
No 66
>PLN00023 GTP-binding protein; Provisional
Probab=99.95 E-value=1.4e-26 Score=179.44 Aligned_cols=122 Identities=22% Similarity=0.389 Sum_probs=105.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEEC-------------CeEEEEEEEeCCCcccccc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD-------------GSTVNLGLWDTAGQEDYNR 69 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~~~~~D~~G~~~~~~ 69 (175)
...+||+++|+.|||||||+++|..+.+...+.+|.+..+ .+.+.++ +..+.++||||+|+++|+.
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs 98 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD 98 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence 3578999999999999999999999999888888886654 3445543 3568899999999999999
Q ss_pred cccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcC-------------CCCcEEEEEeCCCCcccc
Q 030525 70 LRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-------------PGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 70 ~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-------------~~~p~ilv~nK~Dl~~~~ 126 (175)
++..+++++|++|+|||++++.+|+++ ..|++.+.... .++|++|||||+||.+.+
T Consensus 99 L~~~yyr~AdgiILVyDITdr~SFenL-~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~ 167 (334)
T PLN00023 99 CRSLFYSQINGVIFVHDLSQRRTKTSL-QKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKE 167 (334)
T ss_pred hhHHhccCCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccc
Confidence 999999999999999999999999999 89999998652 258999999999997653
No 67
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.95 E-value=2e-26 Score=164.55 Aligned_cols=122 Identities=39% Similarity=0.674 Sum_probs=107.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
..+||+++|++|||||||++++.++.+...+.++....+ ...+..++..+.+++||+||++++..++..++++++++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 458999999999999999999999998877778776544 5567778888899999999999998888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCC-CCcEEEEEeCCCCcccch
Q 030525 84 AFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~ 127 (175)
|||++++.+++.+ ..|+..+.+... +.|+++|+||+|+.+.+.
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~ 125 (165)
T cd01868 82 VYDITKKQTFENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA 125 (165)
T ss_pred EEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccc
Confidence 9999999999999 889998887664 699999999999976543
No 68
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.95 E-value=1.6e-26 Score=164.43 Aligned_cols=119 Identities=35% Similarity=0.683 Sum_probs=104.5
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~ 85 (175)
+||+++|++|||||||++++.++.+...+.++....+ ...+.+++..+.+++||+||++++...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 5899999999999999999999998877777765544 445667888899999999999999888889999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccc
Q 030525 86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~ 126 (175)
|++++.+++++ ..|+..+.... +++|+++|+||+|+.+.+
T Consensus 81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 121 (161)
T cd04113 81 DITNRTSFEAL-PTWLSDARALASPNIVVILVGNKSDLADQR 121 (161)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEEchhcchhc
Confidence 99999999998 88998887655 689999999999997644
No 69
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.95 E-value=2.6e-26 Score=164.78 Aligned_cols=120 Identities=37% Similarity=0.699 Sum_probs=105.2
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v 81 (175)
.+..+||+++|++|||||||++++.++.+.+.+.++.+..+ .+.+..++..+.+++||+||++++..++..+++++|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 45789999999999999999999999999887777765544 45677888999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcC-----CCCcEEEEEeCCCCc
Q 030525 82 ILAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLDLR 123 (175)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~ 123 (175)
++|||++++.+++.+ ..|...+.... .++|+++|+||+|+.
T Consensus 82 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 82 LLTFAVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred EEEEECCCHHHHHhH-HHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 999999999999998 88988775432 368999999999986
No 70
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.94 E-value=3.3e-26 Score=164.62 Aligned_cols=121 Identities=21% Similarity=0.332 Sum_probs=105.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCC-CCCCCCeeeeeE-EEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~-~~~~~t~~~~~~-~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v 81 (175)
.+.+||+++|++|||||||+++|.++.+. .++.||....+. ..+..++..+.+.+||++|++.+..++..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 46799999999999999999999999998 888898876654 4567788888999999999999988888899999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 82 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
++|||++++.+++.+ ..|...+... .++|+++|+||+|+.+.+
T Consensus 82 llv~d~~~~~s~~~~-~~~~~~~~~~-~~~p~iiv~NK~Dl~~~~ 124 (169)
T cd01892 82 CLVYDSSDPKSFSYC-AEVYKKYFML-GEIPCLFVAAKADLDEQQ 124 (169)
T ss_pred EEEEeCCCHHHHHHH-HHHHHHhccC-CCCeEEEEEEcccccccc
Confidence 999999999999998 7888766432 479999999999996554
No 71
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.94 E-value=2.6e-26 Score=164.80 Aligned_cols=121 Identities=29% Similarity=0.650 Sum_probs=105.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
..+||+++|++|||||||++++.++.+...+.++.+... ...+..++....+.+||++|++++......+++++|++++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 458999999999999999999999998877777765443 4566778888899999999999988888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccc
Q 030525 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~ 126 (175)
|||++++.+++.+ ..|+..+.+.. ++.|+++|+||.|+.+++
T Consensus 83 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~ 125 (168)
T cd01866 83 VYDITRRETFNHL-TSWLEDARQHSNSNMTIMLIGNKCDLESRR 125 (168)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECccccccc
Confidence 9999999999999 88999887754 689999999999997544
No 72
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.94 E-value=3.6e-26 Score=167.42 Aligned_cols=117 Identities=37% Similarity=0.656 Sum_probs=104.4
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCC-CCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~-~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v 84 (175)
+||+++|++|||||||+++|.++.+.. .+.++.+..+ .+.+..++..+.+++||++|++++..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999999874 5777776655 44677888899999999999999988888899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcc
Q 030525 85 FSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (175)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 124 (175)
||++++.+++++ ..|+..+....++.|+++|+||+|+.+
T Consensus 81 ~d~~~~~s~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~ 119 (193)
T cd04118 81 YDLTDSSSFERA-KFWVKELQNLEEHCKIYLCGTKSDLIE 119 (193)
T ss_pred EECCCHHHHHHH-HHHHHHHHhcCCCCCEEEEEEcccccc
Confidence 999999999998 889999887666899999999999864
No 73
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.94 E-value=2.3e-26 Score=163.80 Aligned_cols=111 Identities=29% Similarity=0.432 Sum_probs=96.2
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d 86 (175)
+||+++|++|||||||++++..+.|.+.+.|+ ...+...+.+++..+.+.+||++|++. ..+++++|++++|||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d 74 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS 74 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence 58999999999999999999999987766554 455567788899899999999999975 356789999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCcc
Q 030525 87 LISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRD 124 (175)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~ 124 (175)
++++.||+++ ..|+..+.+.. +++|+++||||+|+..
T Consensus 75 ~~~~~sf~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~~ 113 (158)
T cd04103 75 LENEASFQTV-YNLYHQLSSYRNISEIPLILVGTQDAISE 113 (158)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEeeHHHhhh
Confidence 9999999999 78999887764 5799999999999853
No 74
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.94 E-value=4.8e-26 Score=163.14 Aligned_cols=121 Identities=73% Similarity=1.260 Sum_probs=108.8
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d 86 (175)
+||+++|++|||||||+++|.++.+...+.++..+.+......++..+.+++||+||++++...+..+++.+|++++|||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 68999999999999999999999997777888877777777788889999999999999888888888899999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
++++.+|......|+..+.....+.|+++|+||+|+.+.+.
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 121 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDEN 121 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchh
Confidence 99999999887889998887767899999999999986654
No 75
>PLN03110 Rab GTPase; Provisional
Probab=99.94 E-value=2.5e-26 Score=171.43 Aligned_cols=122 Identities=34% Similarity=0.630 Sum_probs=108.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
..+||+++|++|||||||+++|.++.+...+.++.+..+ ...+..++..+.+++||++|++++..++..++++++++++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il 90 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence 578999999999999999999999999877778876554 5677788888999999999999999999899999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccch
Q 030525 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
|||++++.+|+++ ..|+..+.... .++|+++|+||+|+.+.+.
T Consensus 91 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~ 134 (216)
T PLN03110 91 VYDITKRQTFDNV-QRWLRELRDHADSNIVIMMAGNKSDLNHLRS 134 (216)
T ss_pred EEECCChHHHHHH-HHHHHHHHHhCCCCCeEEEEEEChhcccccC
Confidence 9999999999998 88999888765 5799999999999976554
No 76
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.94 E-value=3.5e-26 Score=164.02 Aligned_cols=120 Identities=34% Similarity=0.627 Sum_probs=108.2
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d 86 (175)
+||+++|++|||||||++++.++.+...+.++....+.+.+..++..+.+++||+||+++|..++..+++.++++++|||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~ 81 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYS 81 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEE
Confidence 79999999999999999999999998888888877777777888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCcccch
Q 030525 87 LISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~ 127 (175)
++++++++.. ..|...+.+.. .+.|+++++||.|+.+.+.
T Consensus 82 ~~~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~ 123 (168)
T cd04177 82 VTSEASLNEL-GELREQVLRIKDSDNVPMVLVGNKADLEDDRQ 123 (168)
T ss_pred CCCHHHHHHH-HHHHHHHHHhhCCCCCCEEEEEEChhccccCc
Confidence 9999999999 78888887543 5799999999999976553
No 77
>PLN03108 Rab family protein; Provisional
Probab=99.94 E-value=3.3e-26 Score=170.08 Aligned_cols=126 Identities=29% Similarity=0.621 Sum_probs=109.8
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 030525 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGAD 79 (175)
Q Consensus 1 m~~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 79 (175)
|.....+||+++|++|||||||++++....+...+.++....+ ...+.+++..+.+++||++|++.+...+..+++++|
T Consensus 1 ~~~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad 80 (210)
T PLN03108 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA 80 (210)
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence 7677789999999999999999999999988877777775544 456777888899999999999999888888999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccch
Q 030525 80 VFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 80 ~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
++++|||++++.+|+.+ ..|+..+.... ++.|+++|+||+|+.+.+.
T Consensus 81 ~~vlv~D~~~~~s~~~l-~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~ 128 (210)
T PLN03108 81 GALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAHRRA 128 (210)
T ss_pred EEEEEEECCcHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCccccC
Confidence 99999999999999998 78988776554 5799999999999976544
No 78
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.94 E-value=9.6e-28 Score=166.22 Aligned_cols=131 Identities=31% Similarity=0.549 Sum_probs=113.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEE-EEE-ECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~-~~~-~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
..++++++|++-||||||++.|..++|.+-.+||.+.++-. -+. .+|..+++++|||+||++|++..++||+++-+++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 57899999999999999999999999999999999766533 333 4688999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC--CC-CcEEEEEeCCCCcccchhhccCCCCccccccchhcc
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYA--PG-VPIILVGTKLDLRDDKQFFIDHPGAVPITTAQVDYK 146 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~-~p~ilv~nK~Dl~~~~~~~~~~~~~~~vs~~~~~~~ 146 (175)
+|||++|+.||+.+ +.|+++..... +. +-+++||+|+||..+|+ |++++++..
T Consensus 87 lvyditnr~sfehv-~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRq----------Vt~EEaEkl 142 (213)
T KOG0091|consen 87 LVYDITNRESFEHV-ENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQ----------VTAEEAEKL 142 (213)
T ss_pred EEEeccchhhHHHH-HHHHHHHHHhcCCCCeeEEEEeccccchhhhcc----------ccHHHHHHH
Confidence 99999999999999 99999877554 33 44589999999998887 666666543
No 79
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.94 E-value=3.1e-26 Score=170.35 Aligned_cols=121 Identities=34% Similarity=0.587 Sum_probs=104.0
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeee-eEEEEEE-CCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~-~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
.+||+++|++|||||||+++|.++.+...+.++.+.+ +.+.+.. ++..+.+++|||+|++++..++..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 5899999999999999999999999988777777544 3445555 4677899999999999999888899999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCcccch
Q 030525 84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~ 127 (175)
|||++++.||+++ ..|+..+.+.. ...|+++||||+|+.+.+.
T Consensus 82 v~D~~~~~Sf~~l-~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~ 126 (211)
T cd04111 82 VFDITNRESFEHV-HDWLEEARSHIQPHRPVFILVGHKCDLESQRQ 126 (211)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCeEEEEEEccccccccc
Confidence 9999999999999 88999887654 3578899999999976543
No 80
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.94 E-value=2.7e-26 Score=169.18 Aligned_cols=112 Identities=31% Similarity=0.596 Sum_probs=102.0
Q ss_pred ECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCCh
Q 030525 12 VGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK 90 (175)
Q Consensus 12 ~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~ 90 (175)
+|++|||||||+++|+.+.+...+.+|.+..+ ...+..++..+++++|||+|+++|..++..+++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999999888888886554 45677788899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcc
Q 030525 91 ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (175)
Q Consensus 91 ~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 124 (175)
.||+.+ ..|+..+.+..+++|++|||||+|+.+
T Consensus 81 ~S~~~i-~~w~~~i~~~~~~~piilvgNK~Dl~~ 113 (200)
T smart00176 81 VTYKNV-PNWHRDLVRVCENIPIVLCGNKVDVKD 113 (200)
T ss_pred HHHHHH-HHHHHHHHHhCCCCCEEEEEECccccc
Confidence 999999 889999988778899999999999964
No 81
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.94 E-value=5.3e-26 Score=166.56 Aligned_cols=119 Identities=37% Similarity=0.774 Sum_probs=103.6
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCC-CCCCCeeeeeE-EEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~-~~~~t~~~~~~-~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v 84 (175)
+||+++|++|||||||++++..+.+.. .+.++....+. ..+.+++..+.+++|||||++++...+..+++++|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999998854 55666655543 4567788889999999999999988888899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccc
Q 030525 85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~ 126 (175)
||++++.+++++ ..|+..+.... .++|+++|+||+|+..++
T Consensus 81 ~D~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~ 122 (191)
T cd04112 81 YDITNKASFDNI-RAWLTEIKEYAQEDVVIMLLGNKADMSGER 122 (191)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEcccchhcc
Confidence 999999999999 88999888776 479999999999997544
No 82
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.94 E-value=6.8e-26 Score=162.30 Aligned_cols=120 Identities=31% Similarity=0.505 Sum_probs=100.6
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d 86 (175)
+||+++|++|||||||+++|..+.+.+.+.+ +..........++..+.+++|||||++.+...+..+++++|++++|||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPR-VLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS 79 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCC-cccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence 4899999999999999999999998765433 334444445567778999999999998877777778899999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
++++.+++.+...|++.+.....+.|+++|+||+|+.+.+.
T Consensus 80 ~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~ 120 (166)
T cd01893 80 VDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSS 120 (166)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccc
Confidence 99999999985679988887667899999999999976553
No 83
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.94 E-value=7.7e-26 Score=161.26 Aligned_cols=120 Identities=39% Similarity=0.692 Sum_probs=103.0
Q ss_pred eEEEEECCCCCCHHHHHHHhhcC--CCCCCCCCCeeeee-EEEEEEC-CeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNF-SANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~--~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
+||+++|++|||||||++++..+ .+.+++.++.+... ...+..+ +..+.+.+||+||++.+..+...+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999965 67788888885544 3445554 57799999999999998888888999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
+|||++++.+++.+ +.|+..+.....+.|+++|+||+|+.+.++
T Consensus 81 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 124 (164)
T cd04101 81 LVYDVSNKASFENC-SRWVNKVRTASKHMPGVLVGNKMDLADKAE 124 (164)
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccccccC
Confidence 99999999999998 899998887666799999999999976543
No 84
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.94 E-value=9.2e-26 Score=168.51 Aligned_cols=113 Identities=33% Similarity=0.513 Sum_probs=94.0
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d 86 (175)
+||+++|++|||||||+++|..+.|.. +.+|.+..+... ....+.+.+|||+|++.|..++..+++++|++|+|||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~---~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D 76 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLK---QWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD 76 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEE---EeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence 589999999999999999999999874 466665443221 1245789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCcc
Q 030525 87 LISKASYENVAKKWIPELRHY-APGVPIILVGTKLDLRD 124 (175)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~ 124 (175)
+++++||+++ ..|...+.+. .+++|++|||||+|+.+
T Consensus 77 vt~~~Sf~~l-~~~~~~l~~~~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 77 VSNVQSLEEL-EDRFLGLTDTANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 9999999999 5555555543 36799999999999976
No 85
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.94 E-value=1.2e-25 Score=159.70 Aligned_cols=118 Identities=36% Similarity=0.638 Sum_probs=102.6
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeee-eEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~ 85 (175)
+||+++|++|||||||++++.+..+...+.++.... ....+..++..+.+++||+||++++......+++++|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 489999999999999999999999877767766543 4556777888889999999999999888888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCccc
Q 030525 86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125 (175)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~ 125 (175)
|++++.+|+.+ ..|+..+.... .+.|+++|+||+|+.+.
T Consensus 81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~D~~~~ 120 (161)
T cd01861 81 DITNRQSFDNT-DKWIDDVRDERGNDVIIVLVGNKTDLSDK 120 (161)
T ss_pred ECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEEEChhcccc
Confidence 99999999998 88998876554 46999999999999643
No 86
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.94 E-value=1.7e-25 Score=164.81 Aligned_cols=119 Identities=26% Similarity=0.501 Sum_probs=98.8
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeee-eEEEEEECCeEEEEEEEeCCCccccccc--------ccccccC
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLSYRG 77 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~~~~~ 77 (175)
+||+|+|++|||||||+++|..+.|...+.|++... +...+..++..+.+++|||||...+... ....+++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 589999999999999999999999988888887544 4456677888899999999997654322 2234789
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHhhc----CCCCcEEEEEeCCCCcccc
Q 030525 78 ADVFILAFSLISKASYENVAKKWIPELRHY----APGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 78 ~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~ilv~nK~Dl~~~~ 126 (175)
+|++++|||++++.||+.+ +.|.+.+.+. .+++|+++||||+|+.+.+
T Consensus 81 ad~iilv~D~~~~~S~~~~-~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~ 132 (198)
T cd04142 81 SRAFILVYDICSPDSFHYV-KLLRQQILETRPAGNKEPPIVVVGNKRDQQRHR 132 (198)
T ss_pred CCEEEEEEECCCHHHHHHH-HHHHHHHHHhcccCCCCCCEEEEEECccccccc
Confidence 9999999999999999998 8888877654 2579999999999997654
No 87
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.94 E-value=1.5e-25 Score=163.64 Aligned_cols=119 Identities=55% Similarity=0.961 Sum_probs=105.5
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d 86 (175)
.|++++|++|+|||||++++..+.+.+.+.++....+...+..++..+.+.+||++|++.+......+++++|+++++||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~ 81 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA 81 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999988888777777777777777778888899999999999888777778899999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
+++.++|+++...|+..+.+..+++|+++||||+|+.+.
T Consensus 82 i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~ 120 (187)
T cd04129 82 VDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQD 120 (187)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhC
Confidence 999999999956799999877778999999999999643
No 88
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.93 E-value=9.3e-26 Score=161.53 Aligned_cols=115 Identities=19% Similarity=0.284 Sum_probs=99.0
Q ss_pred EEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECC
Q 030525 9 CVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI 88 (175)
Q Consensus 9 i~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~ 88 (175)
|+++|++|||||||+++|.++.+...+.||.+... ..+++..+++++||++|+++++..+..+++++|++++|||.+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~---~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t 78 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS---VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSA 78 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce---EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECC
Confidence 79999999999999999999988887788775432 234555688999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 89 SKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 89 ~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
++.++... +.|+..+.+..+++|+++|+||+|+.+.+.
T Consensus 79 ~~~s~~~~-~~~l~~~~~~~~~~piilv~NK~Dl~~~~~ 116 (164)
T cd04162 79 DSERLPLA-RQELHQLLQHPPDLPLVVLANKQDLPAARS 116 (164)
T ss_pred CHHHHHHH-HHHHHHHHhCCCCCcEEEEEeCcCCcCCCC
Confidence 99999988 778777765447899999999999987654
No 89
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.93 E-value=2.7e-25 Score=158.17 Aligned_cols=119 Identities=39% Similarity=0.716 Sum_probs=105.5
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v 84 (175)
.+||+++|++|||||||++++.++.+.+.+.++.+..+ ...+..++..+++.+||+||++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999999998876777776544 56777888899999999999999888888899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCccc
Q 030525 85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125 (175)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~ 125 (175)
||++++.+++.. ..|+..+.... +++|+++++||+|+.+.
T Consensus 81 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 121 (163)
T cd01860 81 YDITSEESFEKA-KSWVKELQRNASPNIIIALVGNKADLESK 121 (163)
T ss_pred EECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 999999999998 88998887766 67999999999998753
No 90
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.93 E-value=3e-25 Score=157.90 Aligned_cols=119 Identities=41% Similarity=0.779 Sum_probs=104.1
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~ 85 (175)
+||+++|++|||||||++++.+..+...+.++....+ ...+..++..+.+++||+||++++......+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 5899999999999999999999988777777765554 345677888889999999999999888888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccc
Q 030525 86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~ 126 (175)
|++++.+++.+ ..|+..+.... +++|+++|+||+|+.+.+
T Consensus 81 d~~~~~s~~~~-~~~l~~~~~~~~~~~pivvv~nK~D~~~~~ 121 (164)
T smart00175 81 DITNRESFENL-KNWLKELREYADPNVVIMLVGNKSDLEDQR 121 (164)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEEchhccccc
Confidence 99999999998 77998887765 689999999999987643
No 91
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.93 E-value=4.7e-25 Score=158.14 Aligned_cols=117 Identities=34% Similarity=0.682 Sum_probs=101.4
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeee-eEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~ 85 (175)
+||+++|++|||||||++++.++.+...+.++.... ..+.+.+++..+.+++||+||++.+...+..+++++|++|++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 589999999999999999999999887777776544 3456678888899999999999999888888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCC-----CCcEEEEEeCCCCcc
Q 030525 86 SLISKASYENVAKKWIPELRHYAP-----GVPIILVGTKLDLRD 124 (175)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~ 124 (175)
|++++.++++. ..|...+..... ++|+++|+||+|+.+
T Consensus 81 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (172)
T cd01862 81 DVTNPKSFESL-DSWRDEFLIQASPSDPENFPFVVLGNKIDLEE 123 (172)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence 99999999988 778876654432 799999999999975
No 92
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.93 E-value=5.7e-25 Score=155.93 Aligned_cols=120 Identities=38% Similarity=0.738 Sum_probs=103.3
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~ 85 (175)
+||+++|++|||||||++++..+.+.+.+.++..... ...+...+..+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 5899999999999999999999988776666664443 445666777889999999999999888888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccch
Q 030525 86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
|++++.+++.+ ..|...+.+.. .+.|+++|+||+|+.+.++
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~ 122 (162)
T cd04123 81 DITDADSFQKV-KKWIKELKQMRGNNISLVIVGNKIDLERQRV 122 (162)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccC
Confidence 99999999998 88998887765 4799999999999975543
No 93
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.93 E-value=1.1e-24 Score=155.94 Aligned_cols=126 Identities=33% Similarity=0.639 Sum_probs=107.3
Q ss_pred CCC-CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeee-eeEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 030525 1 MSA-SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78 (175)
Q Consensus 1 m~~-~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 78 (175)
|.+ ...+||+++|++|||||||++++..+.+.+.+.++... .....+..++..+.+.+||+||++.+...+..+++.+
T Consensus 1 ~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 80 (169)
T cd04114 1 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSA 80 (169)
T ss_pred CCCCCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCC
Confidence 553 45799999999999999999999988887776666643 3455677888888999999999999888888899999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccch
Q 030525 79 DVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 79 d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
|++++|||++++.+++.+ ..|+..+.... .++|+++|+||+|+.+.++
T Consensus 81 d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~ 129 (169)
T cd04114 81 NALILTYDITCEESFRCL-PEWLREIEQYANNKVITILVGNKIDLAERRE 129 (169)
T ss_pred CEEEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccc
Confidence 999999999999999998 88998887665 4799999999999976544
No 94
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.93 E-value=5.4e-25 Score=164.78 Aligned_cols=118 Identities=28% Similarity=0.436 Sum_probs=98.9
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCC-CCCCCCee-eeeEEEEEECCeEEEEEEEeCCCccccccccccccc-CccEEEE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYR-GADVFIL 83 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~-~~~~~t~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~-~~d~vi~ 83 (175)
+||+++|++|||||||+++|..+.+. ..+.++.. +.+.+.+.+++....+.+||++|++. .....+++ ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999988886 66666654 55667788888889999999999982 23345566 9999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCcccch
Q 030525 84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~ 127 (175)
|||++++.+|+.+ ..|+..+.+.. .+.|+++|+||+|+.+.+.
T Consensus 79 V~d~td~~S~~~~-~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~ 123 (221)
T cd04148 79 VYSVTDRSSFERA-SELRIQLRRNRQLEDRPIILVGNKSDLARSRE 123 (221)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEChhccccce
Confidence 9999999999998 88988887654 5799999999999976554
No 95
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.93 E-value=1.4e-24 Score=154.36 Aligned_cols=116 Identities=36% Similarity=0.727 Sum_probs=102.0
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeE-EEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~ 85 (175)
+||+++|++|||||||++++.++.+...+.++....+. ..+..++..+.+++||+||++.+......+++++|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999887767777765543 44567778899999999999999888888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCc
Q 030525 86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLR 123 (175)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~ 123 (175)
|++++.+++.+ ..|+..+.+.. .+.|+++|+||+|+.
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 81 DVTRRDTFTNL-ETWLNELETYSTNNDIVKMLVGNKIDKE 119 (161)
T ss_pred ECCCHHHHHhH-HHHHHHHHHhCCCCCCcEEEEEECCccc
Confidence 99999999998 77998887764 579999999999997
No 96
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.93 E-value=2.5e-25 Score=159.92 Aligned_cols=116 Identities=22% Similarity=0.342 Sum_probs=93.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
++.+||+++|++|||||||++++..+.+.. +.||.+.... .+.. ..+.+++||+||+++++..+..+++++|++|+
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~-~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE-TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE-EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 467899999999999999999999877753 4566544432 2222 45789999999999998888889999999999
Q ss_pred EEECCChhhHHHHHHHHHH-HHhhc-CCCCcEEEEEeCCCCcc
Q 030525 84 AFSLISKASYENVAKKWIP-ELRHY-APGVPIILVGTKLDLRD 124 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~-~~~~~-~~~~p~ilv~nK~Dl~~ 124 (175)
|||++++.++++. ..|+. .+... .+++|++||+||+|+.+
T Consensus 83 v~D~t~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 124 (168)
T cd04149 83 VVDSADRDRIDEA-RQELHRIINDREMRDALLLVFANKQDLPD 124 (168)
T ss_pred EEeCCchhhHHHH-HHHHHHHhcCHhhcCCcEEEEEECcCCcc
Confidence 9999999999998 45554 44433 26799999999999964
No 97
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.93 E-value=8.5e-25 Score=155.44 Aligned_cols=117 Identities=37% Similarity=0.654 Sum_probs=105.5
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d 86 (175)
+||+++|++|||||||++++..+.+...+.++..+.+.+....++..+.+++||+||++++...+..+++.+|+++++||
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 58999999999999999999999998888888877777777888888999999999999999998899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCcc
Q 030525 87 LISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRD 124 (175)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~ 124 (175)
++++.+++.. ..|...+.+.. .+.|+++|+||+|+.+
T Consensus 81 ~~~~~s~~~~-~~~~~~~~~~~~~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 81 ITDMESFTAT-AEFREQILRVKDDDNVPLLLVGNKCDLED 119 (164)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEcccccc
Confidence 9999999998 77777776653 5799999999999976
No 98
>PLN03118 Rab family protein; Provisional
Probab=99.93 E-value=1.6e-24 Score=161.13 Aligned_cols=122 Identities=31% Similarity=0.607 Sum_probs=103.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
..+||+++|++|||||||+++|.++.+. .+.++.+..+ ...+..++..+.+.+|||||++++..++..+++++|++++
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vl 91 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIIL 91 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 4689999999999999999999998874 4566665544 4556678888999999999999999988899999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCcccch
Q 030525 84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~ 127 (175)
|||++++++|+++...|...+.... .+.|+++|+||+|+...+.
T Consensus 92 v~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~ 137 (211)
T PLN03118 92 VYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERD 137 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCc
Confidence 9999999999999666877776543 4689999999999976543
No 99
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.3e-25 Score=152.59 Aligned_cols=123 Identities=31% Similarity=0.650 Sum_probs=112.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeE-EEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
+..+|.+|+|+-|||||+|+++|...+|..+..-+++..+. ..+.+.+.++++++|||.|+++|+...++|++++-+.+
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal 88 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 88 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence 46899999999999999999999999998888888876664 45778999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccch
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
+|||++.++++..+ ..|+...+..- ++..++++|||.||+++|.
T Consensus 89 mvyditrrstynhl-sswl~dar~ltnpnt~i~lignkadle~qrd 133 (215)
T KOG0097|consen 89 MVYDITRRSTYNHL-SSWLTDARNLTNPNTVIFLIGNKADLESQRD 133 (215)
T ss_pred EEEEehhhhhhhhH-HHHHhhhhccCCCceEEEEecchhhhhhccc
Confidence 99999999999999 89999888776 7889999999999998887
No 100
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.93 E-value=4.7e-27 Score=157.94 Aligned_cols=120 Identities=34% Similarity=0.698 Sum_probs=106.7
Q ss_pred EEECCCCCCHHHHHHHhhcCCCC-CCCCCCeeeeeEE-EEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 030525 10 VTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (175)
Q Consensus 10 ~v~G~~~~GKTsli~~l~~~~~~-~~~~~t~~~~~~~-~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~ 87 (175)
+++|++++|||+|+-||-.+.|- .+..+|.+.+++. -+..+++++++++|||.||++|++..+.||+++|+.+++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 46899999999999999998884 4455666777765 466799999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccchhhc
Q 030525 88 ISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFI 130 (175)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~ 130 (175)
.|..||++. +.|+.++..+. ..+.++++|||||+.++|.+..
T Consensus 81 ankasfdn~-~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ 123 (192)
T KOG0083|consen 81 ANKASFDNC-QAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKR 123 (192)
T ss_pred ccchhHHHH-HHHHHHHHHHHHhhHhHhhhccccccchhhcccc
Confidence 999999999 99999999887 6789999999999999887544
No 101
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.93 E-value=5e-25 Score=159.34 Aligned_cols=117 Identities=20% Similarity=0.308 Sum_probs=95.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
++.+||+++|++|||||||++++..+.+. ++.||.+.... .+.. ..+.+++||+||++++...+..+++++|++|+
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~-~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE-TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE-EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 45799999999999999999999988874 45676654443 2233 34789999999999999988899999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHh-hc-CCCCcEEEEEeCCCCccc
Q 030525 84 AFSLISKASYENVAKKWIPELR-HY-APGVPIILVGTKLDLRDD 125 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~-~~-~~~~p~ilv~nK~Dl~~~ 125 (175)
|||++++.++++. ..|+..+. +. .+++|++||+||+|+.+.
T Consensus 87 v~D~t~~~s~~~~-~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 129 (175)
T smart00177 87 VVDSNDRDRIDEA-REELHRMLNEDELRDAVILVFANKQDLPDA 129 (175)
T ss_pred EEECCCHHHHHHH-HHHHHHHhhCHhhcCCcEEEEEeCcCcccC
Confidence 9999999999998 55555543 32 257999999999999754
No 102
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.92 E-value=5.7e-25 Score=156.66 Aligned_cols=115 Identities=18% Similarity=0.295 Sum_probs=92.1
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d 86 (175)
+||+++|++|||||||++++..+.+. .+.||.+.... .+.. ..+.+.+||+||++++...+..+++++|++++|||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D 76 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE-EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 48999999999999999999988886 35676654432 2333 35789999999999998888899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCccc
Q 030525 87 LISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125 (175)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~ 125 (175)
++++.++++..+.|...+.... .+.|++|++||+|+.+.
T Consensus 77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 116 (159)
T cd04150 77 SNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA 116 (159)
T ss_pred CCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC
Confidence 9999999998443444433322 46899999999999653
No 103
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.92 E-value=3.2e-24 Score=159.82 Aligned_cols=122 Identities=31% Similarity=0.581 Sum_probs=107.8
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeE-EEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 030525 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (175)
Q Consensus 2 ~~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 80 (175)
.....+||+++|++|||||||+++++.+.+...+.++....+. ..+..++..+.+++||++|++++...+..++..+++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~ 84 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC 84 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence 4567899999999999999999999999998888888765543 345567888999999999999998888889999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcc
Q 030525 81 FILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (175)
Q Consensus 81 vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 124 (175)
+++|||++++.++..+ ..|+..+.+..+++|+++++||+|+.+
T Consensus 85 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~i~lv~nK~Dl~~ 127 (215)
T PTZ00132 85 AIIMFDVTSRITYKNV-PNWHRDIVRVCENIPIVLVGNKVDVKD 127 (215)
T ss_pred EEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccCcc
Confidence 9999999999999998 889998887777899999999999864
No 104
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=5e-27 Score=162.05 Aligned_cols=126 Identities=39% Similarity=0.656 Sum_probs=109.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEE-EEEE---------CCeEEEEEEEeCCCccccccccccc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVV---------DGSTVNLGLWDTAGQEDYNRLRPLS 74 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~-~~~~---------~~~~~~~~~~D~~G~~~~~~~~~~~ 74 (175)
..+|++.+|++||||||++.++..++|.+...+|.+.+++. .+.+ .+..+.+++|||+||++|+++...+
T Consensus 8 ylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAF 87 (219)
T KOG0081|consen 8 YLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAF 87 (219)
T ss_pred HHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHH
Confidence 46789999999999999999999999998888888766643 3333 2356889999999999999999999
Q ss_pred ccCccEEEEEEECCChhhHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCcccchhhcc
Q 030525 75 YRGADVFILAFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFFID 131 (175)
Q Consensus 75 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~ 131 (175)
+++|-+++++||+++++||-+. ..|+.+++-. +++..++++|||+||++.|.+.++
T Consensus 88 fRDAMGFlLiFDlT~eqSFLnv-rnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~ 145 (219)
T KOG0081|consen 88 FRDAMGFLLIFDLTSEQSFLNV-RNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSED 145 (219)
T ss_pred HHhhccceEEEeccchHHHHHH-HHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHH
Confidence 9999999999999999999999 9999988744 479999999999999999985543
No 105
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.92 E-value=6.9e-25 Score=159.48 Aligned_cols=117 Identities=17% Similarity=0.292 Sum_probs=94.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
.+.+||+++|++|||||||++++..+.+. .+.||.+.... .+.. ..+.+++||+||+++++.++..+++++|++|+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~-~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE-EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 45689999999999999999999988876 45677654432 2333 35789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHH-hhcC-CCCcEEEEEeCCCCccc
Q 030525 84 AFSLISKASYENVAKKWIPEL-RHYA-PGVPIILVGTKLDLRDD 125 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~-~~~~-~~~p~ilv~nK~Dl~~~ 125 (175)
|||+++++++.+. ..++..+ .... ++.|++||+||+|+++.
T Consensus 91 V~D~s~~~s~~~~-~~~l~~~l~~~~~~~~piilv~NK~Dl~~~ 133 (181)
T PLN00223 91 VVDSNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
T ss_pred EEeCCcHHHHHHH-HHHHHHHhcCHhhCCCCEEEEEECCCCCCC
Confidence 9999999999988 4454444 3222 58999999999999754
No 106
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.92 E-value=1.8e-24 Score=146.63 Aligned_cols=114 Identities=34% Similarity=0.572 Sum_probs=87.5
Q ss_pred EEEEECCCCCCHHHHHHHhhcCCCCC--CCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~~~~--~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v 84 (175)
||+|+|++|||||||+++|++..+.. ...+...... ............+.+||++|++.+...+...+.++|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 79999999999999999999988761 1122222222 23445666667799999999998888777779999999999
Q ss_pred EECCChhhHHHHHH--HHHHHHhhcCCCCcEEEEEeCCC
Q 030525 85 FSLISKASYENVAK--KWIPELRHYAPGVPIILVGTKLD 121 (175)
Q Consensus 85 ~d~~~~~s~~~~~~--~~~~~~~~~~~~~p~ilv~nK~D 121 (175)
||++++.|++.+.+ .|+..+....+++|++|||||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 99999999998733 36677776667899999999998
No 107
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.92 E-value=1.6e-24 Score=153.32 Aligned_cols=118 Identities=38% Similarity=0.720 Sum_probs=103.7
Q ss_pred EEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~ 87 (175)
||+++|++|||||||++++.+..+...+.++....+......++..+.+++||+||++.+...+..+++.+|++++|||+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 68999999999999999999988888888887766676777787789999999999998888888889999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCcccc
Q 030525 88 ISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~ 126 (175)
+++++++++ ..|...+.+.. .+.|+++|+||+|+.+.+
T Consensus 81 ~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 120 (160)
T cd00876 81 TDRESFEEI-KGYREQILRVKDDEDIPIVLVGNKCDLENER 120 (160)
T ss_pred CCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECCcccccc
Confidence 999999998 77777776654 389999999999997643
No 108
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.92 E-value=2e-24 Score=159.06 Aligned_cols=116 Identities=29% Similarity=0.483 Sum_probs=102.8
Q ss_pred EEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~ 87 (175)
||+++|++|||||||+++++.+.+...+.++........+.+.+..+.+++||++|+..+..++..+++++|++++|||+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 68999999999999999999999988777777655666677788889999999999999988888899999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCcc
Q 030525 88 ISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRD 124 (175)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~ 124 (175)
+++.+++.+ ..|...+.... .+.|+++|+||.|+.+
T Consensus 81 ~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 81 DDPESFEEV-ERLREEILEVKEDKFVPIVVVGNKADSLE 118 (198)
T ss_pred CCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEcccccc
Confidence 999999998 88887776654 4799999999999965
No 109
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.92 E-value=1.4e-24 Score=157.94 Aligned_cols=117 Identities=19% Similarity=0.318 Sum_probs=94.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
++.+||+++|++|||||||++++..+.+.. +.||.+..+. .+.. ..+.+++||+||+++++..+..+++++|++|+
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE-TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE-EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 456899999999999999999999888864 5666654432 2333 45789999999999999888899999999999
Q ss_pred EEECCChhhHHHHHHHHHHHH-hhc-CCCCcEEEEEeCCCCccc
Q 030525 84 AFSLISKASYENVAKKWIPEL-RHY-APGVPIILVGTKLDLRDD 125 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~-~~~-~~~~p~ilv~nK~Dl~~~ 125 (175)
|||++++.+++.. ..++..+ ... ..+.|++||+||.|+.+.
T Consensus 91 v~D~t~~~s~~~~-~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 133 (182)
T PTZ00133 91 VVDSNDRERIGDA-REELERMLSEDELRDAVLLVFANKQDLPNA 133 (182)
T ss_pred EEeCCCHHHHHHH-HHHHHHHHhCHhhcCCCEEEEEeCCCCCCC
Confidence 9999999999988 4444444 322 257899999999999653
No 110
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.91 E-value=1.2e-23 Score=147.94 Aligned_cols=116 Identities=44% Similarity=0.842 Sum_probs=102.4
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~ 85 (175)
+||+++|++|||||||++++.+..+...+.++....+ ...+..++....+.+||+||+..+......+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999998877677765444 445667777899999999999998888888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCc
Q 030525 86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123 (175)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~ 123 (175)
|++++++++.+ ..|+..+.... .+.|+++++||+|+.
T Consensus 81 d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 81 DITNRESFENL-DKWLKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEccccc
Confidence 99999999998 77998888776 689999999999996
No 111
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.91 E-value=8.6e-24 Score=153.06 Aligned_cols=119 Identities=32% Similarity=0.529 Sum_probs=102.1
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d 86 (175)
.||+++|++|||||||++++..+.+...+.|+....+...+..++..+.+++||+||++++...+..++..+|+++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 58999999999999999999999988777887766666677778888899999999999988888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhc-C-CCCcEEEEEeCCCCcccc
Q 030525 87 LISKASYENVAKKWIPELRHY-A-PGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~-~-~~~p~ilv~nK~Dl~~~~ 126 (175)
+++..+++.+ ..|...+.+. . .+.|+++|+||+|+.+.+
T Consensus 82 ~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~ 122 (180)
T cd04137 82 VTSRKSFEVV-KVIYDKILDMLGKESVPIVLVGNKSDLHTQR 122 (180)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEchhhhhcC
Confidence 9999999999 5555555443 3 578999999999997543
No 112
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.91 E-value=7.9e-24 Score=151.93 Aligned_cols=114 Identities=20% Similarity=0.336 Sum_probs=95.0
Q ss_pred EEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~ 87 (175)
+|+++|++|||||||++++.+. +...+.||.+.. ...+.. ..+.+++||+||+++++..+..+++++|++++|||+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~-~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~ 76 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT-PTKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS 76 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce-EEEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence 4899999999999999999976 666667776543 233444 347899999999999998888999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCcccc
Q 030525 88 ISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~ 126 (175)
+++.+++++ ..|+..+.+.. .+.|+++|+||+|+.+.+
T Consensus 77 s~~~s~~~~-~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~ 116 (167)
T cd04161 77 SDDDRVQEV-KEILRELLQHPRVSGKPILVLANKQDKKNAL 116 (167)
T ss_pred CchhHHHHH-HHHHHHHHcCccccCCcEEEEEeCCCCcCCC
Confidence 999999998 77887775442 579999999999998765
No 113
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.91 E-value=6.7e-24 Score=152.49 Aligned_cols=112 Identities=18% Similarity=0.318 Sum_probs=92.2
Q ss_pred EEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~ 87 (175)
||+++|++|||||||++++.++.+.. +.||.+..+. .+.. ..+.+++||+||+.++...+..+++++|++++|||+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~-~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 76 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE-TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS 76 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE-EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence 68999999999999999999987754 5666544442 2333 457899999999999888888899999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCcc
Q 030525 88 ISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRD 124 (175)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~ 124 (175)
++++++++. ..|+..+.+.. .+.|+++|+||+|+.+
T Consensus 77 s~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 114 (169)
T cd04158 77 SHRDRVSEA-HSELAKLLTEKELRDALLLIFANKQDVAG 114 (169)
T ss_pred CcHHHHHHH-HHHHHHHhcChhhCCCCEEEEEeCcCccc
Confidence 999999998 67776665432 4689999999999964
No 114
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.91 E-value=1.7e-23 Score=152.39 Aligned_cols=117 Identities=25% Similarity=0.399 Sum_probs=95.6
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeee-eEEEEEE-CCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~-~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
.+||+++|++|||||||++++..+.+... .||.+.. ....+.. ++..+.+.+|||||++++..++..+++++|++++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 58999999999999999999999888654 5554333 2333333 4467899999999999998888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCcc
Q 030525 84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRD 124 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~ 124 (175)
|||++++.+++.. ..|+..+.... .+.|+++|+||+|+.+
T Consensus 82 v~D~~~~~~~~~~-~~~~~~i~~~~~~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 82 VVDSVDVERMEEA-KTELHKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred EEECCCHHHHHHH-HHHHHHHHhhhhcCCCcEEEEEECcCccc
Confidence 9999999999888 77777665433 4799999999999864
No 115
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.90 E-value=1.5e-23 Score=148.94 Aligned_cols=114 Identities=24% Similarity=0.299 Sum_probs=91.7
Q ss_pred EEEEECCCCCCHHHHHHHhhcCC-CCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNT-FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d 86 (175)
+|+++|++|||||||++++.+.. +...+.|+.+.... ... ...+.+++||+||++++...+..+++++|++++|+|
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~-~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 77 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE-SFE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVID 77 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE-EEE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEe
Confidence 58999999999999999999875 35556666543222 122 345789999999999999888899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhc---C-CCCcEEEEEeCCCCccc
Q 030525 87 LISKASYENVAKKWIPELRHY---A-PGVPIILVGTKLDLRDD 125 (175)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~---~-~~~p~ilv~nK~Dl~~~ 125 (175)
++++.++... ..|+..+.+. . .+.|+++|+||+|+.+.
T Consensus 78 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 119 (162)
T cd04157 78 SSDRLRLVVV-KDELELLLNHPDIKHRRVPILFFANKMDLPDA 119 (162)
T ss_pred CCcHHHHHHH-HHHHHHHHcCcccccCCCCEEEEEeCccccCC
Confidence 9999999887 6777766442 1 47999999999999754
No 116
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.90 E-value=3.8e-23 Score=149.01 Aligned_cols=117 Identities=19% Similarity=0.317 Sum_probs=93.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
...+||+++|++|||||||++++....+ ..+.++.+.. ...+..+ .+.+.+||+||++.++..+..+++++|++++
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~-~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQ-IKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALIW 87 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccc-eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 4578999999999999999999998754 3445554422 2334444 4789999999999888888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCccc
Q 030525 84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDD 125 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~ 125 (175)
|||++++.++.+. ..|+..+... ..+.|+++|+||+|+.+.
T Consensus 88 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 130 (173)
T cd04154 88 VVDSSDRLRLDDC-KRELKELLQEERLAGATLLILANKQDLPGA 130 (173)
T ss_pred EEECCCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECcccccC
Confidence 9999999999988 6666655332 268999999999999753
No 117
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.90 E-value=3.6e-25 Score=155.69 Aligned_cols=123 Identities=36% Similarity=0.610 Sum_probs=112.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEE-EEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
+..+|++|+|+.+|||||+++|||.+-|..++..+++.++.. .+.+++..+...+||++|+++|......||++|.+.+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v 97 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV 97 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence 357899999999999999999999999999999888766543 5666777788899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
+||+-+|+.||+.. ..|...+..-..++|.++|-||+|+.++.+
T Consensus 98 LVFSTTDr~SFea~-~~w~~kv~~e~~~IPtV~vqNKIDlveds~ 141 (246)
T KOG4252|consen 98 LVFSTTDRYSFEAT-LEWYNKVQKETERIPTVFVQNKIDLVEDSQ 141 (246)
T ss_pred EEEecccHHHHHHH-HHHHHHHHHHhccCCeEEeeccchhhHhhh
Confidence 99999999999999 999999998888999999999999988776
No 118
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.90 E-value=5.4e-23 Score=148.46 Aligned_cols=117 Identities=21% Similarity=0.333 Sum_probs=92.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
...+||+++|++|||||||++++..+.+.. +.|+.+..+. ....+ ...+.+||+||++++...+..+++++|++++
T Consensus 13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE-EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE-EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 357899999999999999999999988865 4566554432 23333 4789999999999998888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcc
Q 030525 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~ 124 (175)
|+|+++++++....+.|...+.... .+.|+++++||+|+.+
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 9999999999887343444433322 5799999999999965
No 119
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.90 E-value=7.9e-23 Score=152.33 Aligned_cols=122 Identities=40% Similarity=0.710 Sum_probs=106.8
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEE-EEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v 84 (175)
.+||+++|++|||||||+++|..+.+...+.++....+.. .....+..+++.+|||+|+++++..+..|+.++++++++
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 4899999999999999999999999999888887665544 444455588999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccch
Q 030525 85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
||.++..++.+..+.|...+.... .+.|+++|+||+|+...+.
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~ 128 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQS 128 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchh
Confidence 999997666666699999999887 4799999999999988753
No 120
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.89 E-value=5.8e-23 Score=145.82 Aligned_cols=114 Identities=18% Similarity=0.288 Sum_probs=89.4
Q ss_pred EEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~ 87 (175)
||+++|+++||||||++++..+.+.. +.|+.+.... .+. ...+.+++||+||++++...+..+++++|++++|+|+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~ 76 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE-TVT--YKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS 76 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE-EEE--ECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence 68999999999999999998877753 4555443332 222 2457899999999999988888899999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCccc
Q 030525 88 ISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125 (175)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~ 125 (175)
+++.++....+.|...++... .+.|+++|+||+|+.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 115 (158)
T cd04151 77 TDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGA 115 (158)
T ss_pred CCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCC
Confidence 999888776344444444322 57999999999999753
No 121
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.89 E-value=1.5e-22 Score=143.69 Aligned_cols=113 Identities=22% Similarity=0.372 Sum_probs=90.5
Q ss_pred EEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~ 87 (175)
+|+++|++|||||||++++..+.+... .|+.+... ..+.. +..+.+.+||+||++.+...+..+++++|++++|+|+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~-~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~ 77 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV-EMLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS 77 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce-EEEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 589999999999999999999887643 45544332 22333 3457899999999998888888889999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhc-C-CCCcEEEEEeCCCCcc
Q 030525 88 ISKASYENVAKKWIPELRHY-A-PGVPIILVGTKLDLRD 124 (175)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~-~-~~~p~ilv~nK~Dl~~ 124 (175)
+++.++... ..|+..+.+. . .+.|+++|+||+|+.+
T Consensus 78 ~~~~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (160)
T cd04156 78 SDEARLDES-QKELKHILKNEHIKGVPVVLLANKQDLPG 115 (160)
T ss_pred CcHHHHHHH-HHHHHHHHhchhhcCCCEEEEEECccccc
Confidence 999999988 5666655432 2 5899999999999964
No 122
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.88 E-value=8.6e-22 Score=138.64 Aligned_cols=114 Identities=25% Similarity=0.422 Sum_probs=93.7
Q ss_pred EEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECC
Q 030525 9 CVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI 88 (175)
Q Consensus 9 i~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~ 88 (175)
|+++|++|||||||++++.+.++..++.|+....... +...+ +.+.+||+||+.+++..+..+++++|++++|+|++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 78 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK-VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAA 78 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE-EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECC
Confidence 7899999999999999999999988888877555432 23333 78999999999999888888999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhhc-C-CCCcEEEEEeCCCCcccc
Q 030525 89 SKASYENVAKKWIPELRHY-A-PGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 89 ~~~s~~~~~~~~~~~~~~~-~-~~~p~ilv~nK~Dl~~~~ 126 (175)
+..++... ..|+..+... . .+.|+++|+||.|+.+..
T Consensus 79 ~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~ 117 (159)
T cd04159 79 DRTALEAA-KNELHDLLEKPSLEGIPLLVLGNKNDLPGAL 117 (159)
T ss_pred CHHHHHHH-HHHHHHHHcChhhcCCCEEEEEeCccccCCc
Confidence 99999887 5555554332 2 578999999999987653
No 123
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.88 E-value=6.6e-22 Score=140.16 Aligned_cols=114 Identities=23% Similarity=0.364 Sum_probs=90.5
Q ss_pred EEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~ 87 (175)
||+++|.+|||||||++++++..+. .+.++..... ..+..+ .+.+.+||+||++.+...+..+++++|++++|||+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~-~~~~t~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~ 76 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV-TTIPTIGFNV-ETVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS 76 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCcCcce-EEEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 6899999999999999999988743 3444443322 223333 47899999999999988888899999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCcccc
Q 030525 88 ISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~ 126 (175)
+++.++... ..|+..+.... .+.|+++|+||+|+.+.+
T Consensus 77 ~~~~~~~~~-~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 116 (158)
T cd00878 77 SDRERIEEA-KEELHKLLNEEELKGVPLLIFANKQDLPGAL 116 (158)
T ss_pred CCHHHHHHH-HHHHHHHHhCcccCCCcEEEEeeccCCcccc
Confidence 999999998 56665554432 589999999999997644
No 124
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.88 E-value=1.3e-21 Score=142.88 Aligned_cols=116 Identities=21% Similarity=0.364 Sum_probs=92.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
.+..||+++|++|||||||++++.++.+. .+.++.... ...+..++ ..+++||+||+.++...+..+++++|++++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~-~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil 92 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT-SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF 92 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 45789999999999999999999988774 455554332 23444544 678999999999888888888999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCcc
Q 030525 84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRD 124 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~ 124 (175)
|+|+++..+++.. ..|+..+.+.. .+.|+++++||+|+.+
T Consensus 93 V~D~~~~~s~~~~-~~~~~~i~~~~~~~~~pvivv~NK~Dl~~ 134 (190)
T cd00879 93 LVDAADPERFQES-KEELDSLLSDEELANVPFLILGNKIDLPG 134 (190)
T ss_pred EEECCcHHHHHHH-HHHHHHHHcCccccCCCEEEEEeCCCCCC
Confidence 9999999999887 56666554432 5799999999999864
No 125
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.87 E-value=1e-21 Score=140.33 Aligned_cols=114 Identities=25% Similarity=0.410 Sum_probs=87.8
Q ss_pred EEEEECCCCCCHHHHHHHhhcCCC------CCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNTF------PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v 81 (175)
||+++|++|||||||++++..... ...+.++..... ..+..+ ...+++||+||++.+...+..+++++|++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 77 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI-GTIEVG--NARLKFWDLGGQESLRSLWDKYYAECHAI 77 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce-EEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEE
Confidence 689999999999999999985322 222333433222 233444 47899999999999888888899999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCccc
Q 030525 82 ILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDD 125 (175)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~ 125 (175)
++|+|.+++.++... ..|+..+.+.. .+.|+++|+||+|+.+.
T Consensus 78 v~vvd~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~ 122 (167)
T cd04160 78 IYVIDSTDRERFEES-KSALEKVLRNEALEGVPLLILANKQDLPDA 122 (167)
T ss_pred EEEEECchHHHHHHH-HHHHHHHHhChhhcCCCEEEEEEccccccC
Confidence 999999999999887 66666654432 57999999999998654
No 126
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.87 E-value=1.5e-21 Score=142.28 Aligned_cols=116 Identities=18% Similarity=0.311 Sum_probs=91.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
++.+||+++|++|||||||++++.++.+.. +.|+.... ...+..+ .+++.+||+||+..++..+..++.++|++++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~ 90 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPT-SEELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIVY 90 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccc-eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 567999999999999999999999887643 33443222 2223333 3789999999999888888899999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCcc
Q 030525 84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRD 124 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~ 124 (175)
|+|++++.++... ..++..+.+. ..+.|+++|+||+|+..
T Consensus 91 vvD~~~~~~~~~~-~~~l~~l~~~~~~~~~piliv~NK~Dl~~ 132 (184)
T smart00178 91 LVDAYDKERFAES-KRELDALLSDEELATVPFLILGNKIDAPY 132 (184)
T ss_pred EEECCcHHHHHHH-HHHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 9999999999888 5565555432 25799999999999864
No 127
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.86 E-value=2.8e-21 Score=139.82 Aligned_cols=119 Identities=24% Similarity=0.382 Sum_probs=95.1
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
.++..||+++|..||||||+++++..+.... ..||.+... ..+..++ +.+.+||.+|+..++..|+.|++++|++|
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~-~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI 86 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNI-EEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII 86 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEE-EEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccc-cCccccccc-ceeeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence 4788999999999999999999999766543 445543332 2344444 67999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCccc
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~ 125 (175)
+|+|.++.+.+.+..+.+...+.+.. .+.|+++++||.|+.+.
T Consensus 87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~ 130 (175)
T PF00025_consen 87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA 130 (175)
T ss_dssp EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS
T ss_pred EEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc
Confidence 99999999999888455545444333 68999999999998764
No 128
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.86 E-value=4.2e-21 Score=141.96 Aligned_cols=118 Identities=14% Similarity=0.191 Sum_probs=88.5
Q ss_pred EEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCc-cEEEEEEE
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA-DVFILAFS 86 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~-d~vi~v~d 86 (175)
+|+++|++|||||||+++|..+.+.....++............+....+++||+||+.+++.....+++.+ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 68999999999999999999998876654442222221121224457899999999999988777889998 99999999
Q ss_pred CCCh-hhHHHHHHHHHHHHhh---cCCCCcEEEEEeCCCCccc
Q 030525 87 LISK-ASYENVAKKWIPELRH---YAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 87 ~~~~-~s~~~~~~~~~~~~~~---~~~~~p~ilv~nK~Dl~~~ 125 (175)
.++. .++....+.|.+.+.. ..+++|+++++||+|+...
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 9988 6777763444443332 2258999999999998754
No 129
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.85 E-value=3.1e-20 Score=130.07 Aligned_cols=120 Identities=42% Similarity=0.623 Sum_probs=98.1
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v 84 (175)
.+||+++|.+|+|||||++++....+...+.++..... ...+..++..+.+.+||+||+.++...+..+++.++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 37999999999999999999999887666666654444 33456677678899999999998888887888999999999
Q ss_pred EECCCh-hhHHHHHHHHHHHHhhcCC-CCcEEEEEeCCCCccc
Q 030525 85 FSLISK-ASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDD 125 (175)
Q Consensus 85 ~d~~~~-~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~ 125 (175)
+|+... .++......|...+.+... +.|+++++||+|+...
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDA 123 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcc
Confidence 999888 7777664477777766664 8999999999999764
No 130
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.84 E-value=1.6e-20 Score=135.59 Aligned_cols=114 Identities=18% Similarity=0.174 Sum_probs=83.7
Q ss_pred EEEEECCCCCCHHHHHHHhhcCC-------CCCCCCCCe------eeeeE-EE--EEE---CCeEEEEEEEeCCCccccc
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNT-------FPTDYVPTV------FDNFS-AN--VVV---DGSTVNLGLWDTAGQEDYN 68 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~-------~~~~~~~t~------~~~~~-~~--~~~---~~~~~~~~~~D~~G~~~~~ 68 (175)
+|+++|+++||||||+++|++.. +...+.++. +.... .. ... ++..+.+++|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 79999999999999999999632 211222211 11111 11 222 5677889999999999998
Q ss_pred ccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 69 ~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
.....+++++|++++|+|+++..+++.. ..|..... .++|+++|+||+|+.+.
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~ 134 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTL-ANFYLALE---NNLEIIPVINKIDLPSA 134 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhH-HHHHHHHH---cCCCEEEEEECCCCCcC
Confidence 8888899999999999999988777665 55544332 47899999999998653
No 131
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.83 E-value=7.3e-20 Score=127.08 Aligned_cols=118 Identities=17% Similarity=0.284 Sum_probs=94.9
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
.++.++|+++|..|+||||++++|.+.. .+...||.+-... +... ..+++++||.+||...++.|+.||..+|++|
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Ik-tl~~--~~~~L~iwDvGGq~~lr~~W~nYfestdglI 88 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIK-TLEY--KGYTLNIWDVGGQKTLRSYWKNYFESTDGLI 88 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeE-EEEe--cceEEEEEEcCCcchhHHHHHHhhhccCeEE
Confidence 3568999999999999999999999876 3444565543332 2333 4478999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcc
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~ 124 (175)
+|+|.+|+.++++....+-..+.... ...|+++++||.|++.
T Consensus 89 wvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~ 131 (185)
T KOG0073|consen 89 WVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG 131 (185)
T ss_pred EEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc
Confidence 99999999999887555555554333 5789999999999984
No 132
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.83 E-value=1.9e-19 Score=129.34 Aligned_cols=117 Identities=26% Similarity=0.354 Sum_probs=89.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
.+.++|+++|++|||||||++++.+..+.. ..++.+.. ...+..++ ..+.+||+||+..+...+..+++.+|++++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~-~~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 87 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFN-IKTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIY 87 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcc-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 457899999999999999999999876542 34443322 22334444 678999999998887777788899999999
Q ss_pred EEECCChhhHHHHHHHHHHHH-hhcC-CCCcEEEEEeCCCCccc
Q 030525 84 AFSLISKASYENVAKKWIPEL-RHYA-PGVPIILVGTKLDLRDD 125 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~-~~~~-~~~p~ilv~nK~Dl~~~ 125 (175)
|+|+++..++... ..|...+ .... .++|+++++||+|+.+.
T Consensus 88 v~D~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 130 (173)
T cd04155 88 VIDSADKKRLEEA-GAELVELLEEEKLAGVPVLVFANKQDLATA 130 (173)
T ss_pred EEeCCCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECCCCccC
Confidence 9999999999887 4444443 3322 47999999999998654
No 133
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.82 E-value=7.3e-20 Score=130.96 Aligned_cols=118 Identities=23% Similarity=0.208 Sum_probs=82.0
Q ss_pred EEEEECCCCCCHHHHHHHhhcCCCCC-CCCCCeeeeeEEEEEECCeEEEEEEEeCCCccc----cccccccc---ccCcc
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----YNRLRPLS---YRGAD 79 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~----~~~~~~~~---~~~~d 79 (175)
+|+++|.+|||||||++++.+..... ....++.......+..++ ...+.+|||||..+ .+.+...+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 68999999999999999999754321 111222121112222332 24799999999742 22233333 34699
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCcccch
Q 030525 80 VFILAFSLISK-ASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 80 ~vi~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~ 127 (175)
++++|+|++++ .+++.+ ..|.+.+.... .+.|+++|+||+|+.+...
T Consensus 81 ~vi~v~D~~~~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~ 131 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDY-KTIRNELELYNPELLEKPRIVVLNKIDLLDEEE 131 (170)
T ss_pred EEEEEEecCCCCCHHHHH-HHHHHHHHHhCccccccccEEEEEchhcCCchh
Confidence 99999999999 788888 88888887654 3689999999999966543
No 134
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=6e-20 Score=130.18 Aligned_cols=121 Identities=21% Similarity=0.326 Sum_probs=102.3
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
..+..+|+++|-.++||||++.++..+++... .||.+..... +.+. .+.|++||.+||++++..|+.|+++.+++|
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~-v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI 89 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVET-VEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGLI 89 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeE-EEEc--ceEEEEEecCCCcccccchhhhccCCcEEE
Confidence 45788999999999999999999999988765 7877554432 2333 588999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccch
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
+|.|.+|++.+.+..+.+...+.... .++|+++.+||.|+++.-.
T Consensus 90 fVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als 135 (181)
T KOG0070|consen 90 FVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS 135 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCC
Confidence 99999999999998666666666544 5899999999999987654
No 135
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.82 E-value=2.1e-19 Score=128.38 Aligned_cols=117 Identities=21% Similarity=0.191 Sum_probs=79.7
Q ss_pred EEEEECCCCCCHHHHHHHhhcCCCCCC-CCCCeeeeeEEEEEECCeEEEEEEEeCCCccccccccc---------ccccC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP---------LSYRG 77 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~---------~~~~~ 77 (175)
+|+++|++|||||||++++.+..+... +..++........ ....+.+++|||||+........ .....
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHF--DYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEE--ccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 799999999999999999998876432 2222222222222 22347899999999843211100 01123
Q ss_pred ccEEEEEEECCChhhH--HHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 78 ADVFILAFSLISKASY--ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 78 ~d~vi~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
+|++++|+|++++.++ +.. ..|+..+....++.|+++|+||+|+.+.+.
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~-~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~ 130 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQ-LSLFEEIKPLFKNKPVIVVLNKIDLLTFED 130 (168)
T ss_pred cCcEEEEEeCCcccccchHHH-HHHHHHHHhhcCcCCeEEEEEccccCchhh
Confidence 6899999999987654 554 578888776556899999999999976544
No 136
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.82 E-value=1.2e-19 Score=133.93 Aligned_cols=122 Identities=21% Similarity=0.213 Sum_probs=86.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCC-CCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccc--cc------ccc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR--LR------PLS 74 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--~~------~~~ 74 (175)
+..++|+++|++|||||||++++.+..+.. +...++.......+..++. ..+.+|||||..+... .. ...
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 117 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTLEE 117 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHHHH
Confidence 456899999999999999999999876432 2222222223333444432 3789999999732111 00 112
Q ss_pred ccCccEEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccch
Q 030525 75 YRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 75 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
+..+|++++|+|++++.++... ..|...+.... .+.|+++|+||+|+.+...
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~-~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~ 170 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQI-ETVEKVLKELGAEDIPMILVLNKIDLLDDEE 170 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHH-HHHHHHHHHcCcCCCCEEEEEEccccCChHH
Confidence 5689999999999999888877 77777777655 4789999999999976553
No 137
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.82 E-value=3e-19 Score=122.87 Aligned_cols=124 Identities=28% Similarity=0.402 Sum_probs=101.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCC--CCCCCCCeeeeeEEEEEE-CCeEEEEEEEeCCCcccc-cccccccccCccE
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQEDY-NRLRPLSYRGADV 80 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~-~~~~~~~~~~~d~ 80 (175)
+..||+|+|..+||||+++.+++-+.. ..+..||.++.|...+.. ++..-.+.++||.|.... ..+-+.|++-+|+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 567999999999999999999995543 455678889988887665 455667999999998766 4456678999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCcccchhh
Q 030525 81 FILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFF 129 (175)
Q Consensus 81 vi~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~ 129 (175)
+++|||..|++||+.+ +.+-+++.+.. +.+|+++.+||+|+.+++.+.
T Consensus 88 fVLVYs~~d~eSf~rv-~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd 137 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRV-ELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVD 137 (198)
T ss_pred EEEEecCCCHHHHHHH-HHHHHHHhhccccccccEEEEechhhcccchhcC
Confidence 9999999999999998 77777776644 579999999999998776643
No 138
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.81 E-value=1.8e-19 Score=127.88 Aligned_cols=111 Identities=23% Similarity=0.208 Sum_probs=75.9
Q ss_pred EEEEECCCCCCHHHHHHHhhcC---CCCCCCCCCe-eeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN---TFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~---~~~~~~~~t~-~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
.|+++|++|||||||+++|.+. .+..+..++. .+.........+ ...+++|||||++++......+++.+|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 6899999999999999999963 3332222222 222122333332 3589999999999886655667889999999
Q ss_pred EEECCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 84 AFSLIS---KASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 84 v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
|+|+++ +++.+.+ . .+... ...|+++|+||+|+.+.
T Consensus 81 V~d~~~~~~~~~~~~~-~----~~~~~-~~~~~ilv~NK~Dl~~~ 119 (164)
T cd04171 81 VVAADEGIMPQTREHL-E----ILELL-GIKRGLVVLTKADLVDE 119 (164)
T ss_pred EEECCCCccHhHHHHH-H----HHHHh-CCCcEEEEEECccccCH
Confidence 999987 4444433 2 22221 22499999999999764
No 139
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.81 E-value=1e-19 Score=133.50 Aligned_cols=116 Identities=16% Similarity=0.139 Sum_probs=83.6
Q ss_pred eeEEEEECCCCCCHHHHHHHhhc--CCCCCCCC------------CCeeee-eEEEEEECCeEEEEEEEeCCCccccccc
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTS--NTFPTDYV------------PTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRL 70 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~--~~~~~~~~------------~t~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~ 70 (175)
.-+|+++|.++||||||+++|+. +.+..... ++.+.. ......++...+.+++|||||+++|...
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 81 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGE 81 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHH
Confidence 34899999999999999999997 55544321 111111 1222334445678999999999999888
Q ss_pred ccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 71 RPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 71 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
...+++++|++++|+|+++.. +... ..|+..+.. .++|+++|+||+|+.+.
T Consensus 82 ~~~~~~~~d~~ilV~d~~~~~-~~~~-~~~~~~~~~--~~~p~iiv~NK~Dl~~~ 132 (194)
T cd01891 82 VERVLSMVDGVLLLVDASEGP-MPQT-RFVLKKALE--LGLKPIVVINKIDRPDA 132 (194)
T ss_pred HHHHHHhcCEEEEEEECCCCc-cHHH-HHHHHHHHH--cCCCEEEEEECCCCCCC
Confidence 888999999999999998743 2232 344444433 47899999999999654
No 140
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.80 E-value=3.4e-19 Score=141.48 Aligned_cols=119 Identities=19% Similarity=0.207 Sum_probs=89.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCC-CCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcc---------ccccccccc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE---------DYNRLRPLS 74 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~---------~~~~~~~~~ 74 (175)
..++|+++|.+|||||||+|+|.+.... .+..+++.+.....+...+ ...+.+|||+|.. .|.... ..
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATL-EE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence 4589999999999999999999987643 3344555555556666643 2478999999972 222222 34
Q ss_pred ccCccEEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccc
Q 030525 75 YRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 75 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~ 126 (175)
+.++|++++|+|++++.+.+.. ..|...+.... .+.|+++|+||+|+.+..
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~-~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~ 317 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQI-EAVEKVLEELGAEDIPQLLVYNKIDLLDEP 317 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHH-HHHHHHHHHhccCCCCEEEEEEeecCCChH
Confidence 7899999999999999888876 66777666654 478999999999997543
No 141
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.80 E-value=7.8e-19 Score=121.62 Aligned_cols=116 Identities=44% Similarity=0.810 Sum_probs=90.9
Q ss_pred EECCCCCCHHHHHHHhhcCCC-CCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCC
Q 030525 11 TVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS 89 (175)
Q Consensus 11 v~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~ 89 (175)
++|++|+|||||++++..... .....++............+....+.+||+||+..+......+++.+|++++|+|+++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 80 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD 80 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence 589999999999999998877 4444555544445555566678899999999998777766778899999999999999
Q ss_pred hhhHHHHHHHH--HHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 90 KASYENVAKKW--IPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 90 ~~s~~~~~~~~--~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
+.++... ..| .........+.|+++|+||+|+.+...
T Consensus 81 ~~~~~~~-~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~ 119 (157)
T cd00882 81 RESFENV-KEWLLLILINKEGENIPIILVGNKIDLPEERV 119 (157)
T ss_pred HHHHHHH-HHHHHHHHHhhccCCCcEEEEEeccccccccc
Confidence 9999988 555 222333336899999999999876543
No 142
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.80 E-value=9.2e-19 Score=142.71 Aligned_cols=114 Identities=25% Similarity=0.325 Sum_probs=88.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCC--CCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLS 74 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~~ 74 (175)
..+||+++|++|||||||+|+|++.. +..++.+++.+.....+..++ ..+++|||||..++... ...+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 46899999999999999999999864 345566666666666677766 45789999998654432 2357
Q ss_pred ccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 75 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
++++|++++|+|++++.+++.. |+..+.. .+.|+++|+||+|+.+.
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~---~l~~~~~--~~~piIlV~NK~Dl~~~ 325 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF---LIIDLNK--SKKPFILVLNKIDLKIN 325 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH---HHHHHhh--CCCCEEEEEECccCCCc
Confidence 8899999999999998887653 6665543 47899999999999654
No 143
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.80 E-value=7.1e-19 Score=125.52 Aligned_cols=114 Identities=18% Similarity=0.217 Sum_probs=81.5
Q ss_pred EEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEEC-CeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~ 85 (175)
.|+++|.+|||||||+++|..+.+...+.++..... ...+..+ +....+.+|||||+..+...+..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 489999999999999999998887655443332222 1223332 23578999999999888887777889999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
|+++....+.. ..+..+.. .+.|+++|+||+|+.+.
T Consensus 82 d~~~~~~~~~~--~~~~~~~~--~~~p~ivv~NK~Dl~~~ 117 (168)
T cd01887 82 AADDGVMPQTI--EAIKLAKA--ANVPFIVALNKIDKPNA 117 (168)
T ss_pred ECCCCccHHHH--HHHHHHHH--cCCCEEEEEEceecccc
Confidence 99874322221 11222332 36899999999998743
No 144
>PTZ00099 rab6; Provisional
Probab=99.79 E-value=1.1e-18 Score=126.32 Aligned_cols=98 Identities=37% Similarity=0.621 Sum_probs=85.0
Q ss_pred CCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhc
Q 030525 29 NTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY 107 (175)
Q Consensus 29 ~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~ 107 (175)
+.|.+++.||.+..+ .+.+.+++..+.+.+|||+|++++..++..+++++|++|+|||++++.||+.+ ..|+..+.+.
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~-~~w~~~i~~~ 81 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENT-TKWIQDILNE 81 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHH-HHHHHHHHHh
Confidence 467788888887555 55678889999999999999999999999999999999999999999999999 8899887655
Q ss_pred C-CCCcEEEEEeCCCCcccch
Q 030525 108 A-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 108 ~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
. +++|++|||||+|+.+.+.
T Consensus 82 ~~~~~piilVgNK~DL~~~~~ 102 (176)
T PTZ00099 82 RGKDVIIALVGNKTDLGDLRK 102 (176)
T ss_pred cCCCCeEEEEEECcccccccC
Confidence 4 6799999999999976443
No 145
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.78 E-value=1.7e-19 Score=123.30 Aligned_cols=117 Identities=23% Similarity=0.379 Sum_probs=100.7
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~ 85 (175)
...+.++|-.++|||||+|....+.+.+.-.|+.+....+ ++...+.+.+||.|||.+|+++|..|++..+++++|+
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk---~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~V 96 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVV 96 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEE---eccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEe
Confidence 5688999999999999999999999988888887665543 3345678999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCccc
Q 030525 86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125 (175)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~ 125 (175)
|..+++.++....++.+.+.+.. ..+|+++.|||.|+++.
T Consensus 97 Daad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A 137 (186)
T KOG0075|consen 97 DAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA 137 (186)
T ss_pred ecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc
Confidence 99999888777566666666655 68999999999999875
No 146
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.78 E-value=2.5e-19 Score=124.86 Aligned_cols=96 Identities=25% Similarity=0.263 Sum_probs=70.1
Q ss_pred EEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcc-----cccccccccccCccEEE
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE-----DYNRLRPLSYRGADVFI 82 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~-----~~~~~~~~~~~~~d~vi 82 (175)
||+++|++|||||||+++|.+..+. +.++... ...+ .+|||||+. .+..+. ..++++|+++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~------~~~~-----~~iDt~G~~~~~~~~~~~~~-~~~~~ad~vi 67 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAV------EYND-----GAIDTPGEYVENRRLYSALI-VTAADADVIA 67 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeE------EEcC-----eeecCchhhhhhHHHHHHHH-HHhhcCCEEE
Confidence 8999999999999999999987652 2233211 1111 689999972 233332 3478999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcc
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 124 (175)
+|||++++.++... .|.... ..|+++|+||+|+.+
T Consensus 68 lv~d~~~~~s~~~~--~~~~~~-----~~p~ilv~NK~Dl~~ 102 (142)
T TIGR02528 68 LVQSATDPESRFPP--GFASIF-----VKPVIGLVTKIDLAE 102 (142)
T ss_pred EEecCCCCCcCCCh--hHHHhc-----cCCeEEEEEeeccCC
Confidence 99999999988653 454432 239999999999964
No 147
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=1.6e-18 Score=123.19 Aligned_cols=121 Identities=31% Similarity=0.511 Sum_probs=107.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEE-EEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
..+|++++|+.|.|||++++|.+.++|..++.+|.+..... ....+...+++..|||.|++.+......|+-.+.+.|+
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 37899999999999999999999999999999998655444 33344446999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
+||++..-+..++ ..|...+.+.+.++|++++|||.|..+..
T Consensus 89 mFdVtsr~t~~n~-~rwhrd~~rv~~NiPiv~cGNKvDi~~r~ 130 (216)
T KOG0096|consen 89 MFDVTSRFTYKNV-PRWHRDLVRVRENIPIVLCGNKVDIKARK 130 (216)
T ss_pred Eeeeeehhhhhcc-hHHHHHHHHHhcCCCeeeeccceeccccc
Confidence 9999999999999 99999999999999999999999987655
No 148
>PRK15494 era GTPase Era; Provisional
Probab=99.78 E-value=3.8e-18 Score=135.17 Aligned_cols=118 Identities=19% Similarity=0.323 Sum_probs=81.7
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHhhcCCCCC--CCCCCeeeeeEEEEEECCeEEEEEEEeCCCccc-cccccc------
Q 030525 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED-YNRLRP------ 72 (175)
Q Consensus 2 ~~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~-~~~~~~------ 72 (175)
++++.++|+++|.+|||||||+|+|++..+.. ....++.......+..++ .++.+|||||..+ +..+..
T Consensus 48 ~~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~ 125 (339)
T PRK15494 48 SNQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCA 125 (339)
T ss_pred cccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHH
Confidence 44567899999999999999999999887642 222333333344444554 4689999999843 322221
Q ss_pred -ccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 73 -LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 73 -~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
..+.++|++++|+|.++ ++......|+..+... +.|.++|+||+|+.+.
T Consensus 126 ~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~ 175 (339)
T PRK15494 126 WSSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIESK 175 (339)
T ss_pred HHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCccc
Confidence 24679999999999764 4555534566666543 5678899999999643
No 149
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.77 E-value=2.7e-18 Score=140.50 Aligned_cols=115 Identities=25% Similarity=0.291 Sum_probs=88.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCC--CCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLS 74 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~~ 74 (175)
..++|+++|.+|||||||+|++.+... ..+..+++.+.....+..++ ..+.+|||||..++... ...+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 357999999999999999999998753 44555566666666666665 46899999998654332 2246
Q ss_pred ccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 75 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
++++|++++|+|++++.+++.. ..|.. ..+.|+++|+||+|+.+...
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~-~~l~~-----~~~~piiiV~NK~DL~~~~~ 338 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDD-EILEE-----LKDKPVIVVLNKADLTGEID 338 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHH-HHHHh-----cCCCCcEEEEEhhhccccch
Confidence 8899999999999999888765 55543 34789999999999976544
No 150
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.77 E-value=7.2e-19 Score=142.97 Aligned_cols=123 Identities=27% Similarity=0.439 Sum_probs=100.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
.+.++|+++|+.|+||||||-++...+|.++ .|...+.......+....+...+.|++..++-+......++.||++.+
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~-VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l 85 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDA-VPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL 85 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhcccc-ccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence 4689999999999999999999999999876 444444333333333445668999998665544444577899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCcccch
Q 030525 84 AFSLISKASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~ 127 (175)
+|+++++++.+.++..|++.+++.. .++|+||||||+|+.+...
T Consensus 86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~ 132 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNEN 132 (625)
T ss_pred EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccc
Confidence 9999999999999999999999987 6899999999999876654
No 151
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.77 E-value=4.4e-18 Score=134.24 Aligned_cols=119 Identities=22% Similarity=0.226 Sum_probs=88.4
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCC-CCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccc----ccccc---ccccC
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY----NRLRP---LSYRG 77 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----~~~~~---~~~~~ 77 (175)
...|.++|.||||||||++++...+. ..++..|+.......+... ....+.+||+||..+- ..+.. ..+++
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 34799999999999999999997543 3445556555444444442 2346899999997421 12222 34567
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCcccc
Q 030525 78 ADVFILAFSLISKASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 78 ~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~ 126 (175)
++++++|+|+++.++++.+ +.|..++..+. .+.|+++|+||+|+.+..
T Consensus 237 a~vlI~ViD~s~~~s~e~~-~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~ 287 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDY-KTIRNELEKYSPELADKPRILVLNKIDLLDEE 287 (335)
T ss_pred cCEEEEEEcCCCCCCHHHH-HHHHHHHHHhhhhcccCCeEEEEECcccCCch
Confidence 9999999999988889888 88999888764 378999999999997554
No 152
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.76 E-value=1.3e-17 Score=117.24 Aligned_cols=113 Identities=25% Similarity=0.288 Sum_probs=81.5
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCC--CCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCccccccc--------cccccc
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLSYR 76 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~~~~ 76 (175)
++|+++|++|+|||||++++.+... ..+..+++..........+ ...+.+|||||..++... ....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 5899999999999999999998764 2333333333333344444 357899999997654322 123567
Q ss_pred CccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 77 GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 77 ~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
++|++++|+|++++.+.... +.|.. ..+.|+++|+||+|+.+...
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~-~~~~~-----~~~~~vi~v~nK~D~~~~~~ 124 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDL-EILEL-----PADKPIIVVLNKSDLLPDSE 124 (157)
T ss_pred hCCEEEEEEECCCCCCHHHH-HHHHh-----hcCCCEEEEEEchhcCCccc
Confidence 99999999999988877766 43332 34799999999999976554
No 153
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.76 E-value=5.3e-18 Score=119.43 Aligned_cols=112 Identities=23% Similarity=0.247 Sum_probs=79.7
Q ss_pred EEECCCCCCHHHHHHHhhcCC--CCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccc--------cccccccCcc
Q 030525 10 VTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR--------LRPLSYRGAD 79 (175)
Q Consensus 10 ~v~G~~~~GKTsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------~~~~~~~~~d 79 (175)
+++|.+|||||||++++.+.. +.....+++.+........++ ..+.+|||||...+.. .....++++|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 479999999999999999764 334444555444444444444 6799999999877543 2234678899
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 80 VFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 80 ~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
++++|+|.++..+.... .+...+.+ .+.|+++|+||+|+.+...
T Consensus 79 ~ii~v~d~~~~~~~~~~--~~~~~~~~--~~~piiiv~nK~D~~~~~~ 122 (157)
T cd01894 79 VILFVVDGREGLTPADE--EIAKYLRK--SKKPVILVVNKVDNIKEED 122 (157)
T ss_pred EEEEEEeccccCCccHH--HHHHHHHh--cCCCEEEEEECcccCChHH
Confidence 99999999876554433 23334443 2589999999999987554
No 154
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=1.1e-17 Score=113.68 Aligned_cols=120 Identities=22% Similarity=0.327 Sum_probs=99.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
.+..+|+.+|-.++||||++..+..+... ...||++.... ++.+ +.++|++||.+|+++.+..|+.||.+..++|+
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~-~~ipTvGFnve-tVty--kN~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE-TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCCc-ccccccceeEE-EEEe--eeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 46789999999999999999999987764 34566544332 2233 55889999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccch
Q 030525 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
|.|..++...++...++...+.... .+.|+++.+||.|+++...
T Consensus 91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~ 135 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMK 135 (180)
T ss_pred EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccC
Confidence 9999999988888677777776554 6899999999999998765
No 155
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.75 E-value=9.2e-18 Score=138.36 Aligned_cols=113 Identities=22% Similarity=0.261 Sum_probs=81.9
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCCC--CCCCCCeeeeeEEEEEECCeEEEEEEEeCCCccc--------ccccccccc
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED--------YNRLRPLSY 75 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~--------~~~~~~~~~ 75 (175)
..+|+|+|.+|||||||+|++++.... .....++.+.....+..++ ..+.+|||||.+. +......++
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 468999999999999999999987542 2222333344444455555 3588999999763 222234568
Q ss_pred cCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcc
Q 030525 76 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (175)
Q Consensus 76 ~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 124 (175)
+.+|++++|+|+++..++.. ..|...+.. .+.|+++|+||+|+..
T Consensus 116 ~~aD~il~VvD~~~~~s~~~--~~i~~~l~~--~~~piilV~NK~Dl~~ 160 (472)
T PRK03003 116 RTADAVLFVVDATVGATATD--EAVARVLRR--SGKPVILAANKVDDER 160 (472)
T ss_pred HhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEECccCCc
Confidence 89999999999998876653 355665554 4799999999999864
No 156
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.75 E-value=1e-17 Score=120.32 Aligned_cols=115 Identities=24% Similarity=0.273 Sum_probs=80.1
Q ss_pred EECCCCCCHHHHHHHhhcCCC-CCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCccc----ccccc---cccccCccEEE
Q 030525 11 TVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----YNRLR---PLSYRGADVFI 82 (175)
Q Consensus 11 v~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~----~~~~~---~~~~~~~d~vi 82 (175)
++|++|||||||++++.+... ..++.+++.......+..++ ...+.+|||||... .+... ..+++++|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 589999999999999998764 23333343333333333441 35689999999732 22222 23467899999
Q ss_pred EEEECCCh------hhHHHHHHHHHHHHhhcC--------CCCcEEEEEeCCCCcccch
Q 030525 83 LAFSLISK------ASYENVAKKWIPELRHYA--------PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 83 ~v~d~~~~------~s~~~~~~~~~~~~~~~~--------~~~p~ilv~nK~Dl~~~~~ 127 (175)
+|+|+++. .+++.. ..|...+.... .+.|+++|+||+|+...+.
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~ 137 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDY-EILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEE 137 (176)
T ss_pred EEEeccCCccccccCHHHHH-HHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhH
Confidence 99999988 577776 66776665432 3789999999999976544
No 157
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.75 E-value=9.2e-18 Score=138.37 Aligned_cols=114 Identities=23% Similarity=0.288 Sum_probs=85.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCC--CCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCccc----------ccccc-
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----------YNRLR- 71 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~----------~~~~~- 71 (175)
...||+++|.+|||||||+++|++..+ .....+++.+.....+..++. .+.+|||||..+ +....
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHHH
Confidence 468999999999999999999998764 334445555555566666665 467999999632 22221
Q ss_pred cccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcc
Q 030525 72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (175)
Q Consensus 72 ~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 124 (175)
..+++++|++++|+|++++.+++.. .++..+.. .+.|+++|+||+|+.+
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~--~~~~~~~~--~~~piIiV~NK~Dl~~ 336 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQ--RVLSMVIE--AGRALVLAFNKWDLVD 336 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCC
Confidence 2357899999999999999888876 35555543 4789999999999965
No 158
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.75 E-value=1.6e-17 Score=117.25 Aligned_cols=108 Identities=14% Similarity=0.185 Sum_probs=76.7
Q ss_pred EECCCCCCHHHHHHHhhcCCCCCC-CCCCeeeeeEEEEEECCeEEEEEEEeCCCccccccc------cccccc--CccEE
Q 030525 11 TVGDGAVGKTCMLISYTSNTFPTD-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL------RPLSYR--GADVF 81 (175)
Q Consensus 11 v~G~~~~GKTsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~------~~~~~~--~~d~v 81 (175)
++|.+|||||||++++.+..+... +..++.+.....+..++ ..+.+|||||+.++... ...++. ++|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998764333 23333444444555554 57899999999776542 344554 99999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 82 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
++|+|.++..+.. .|...+.. .+.|+++|+||+|+.+.+
T Consensus 79 i~v~d~~~~~~~~----~~~~~~~~--~~~~~iiv~NK~Dl~~~~ 117 (158)
T cd01879 79 VNVVDATNLERNL----YLTLQLLE--LGLPVVVALNMIDEAEKR 117 (158)
T ss_pred EEEeeCCcchhHH----HHHHHHHH--cCCCEEEEEehhhhcccc
Confidence 9999998765432 34444443 368999999999997654
No 159
>PRK04213 GTP-binding protein; Provisional
Probab=99.74 E-value=2.3e-18 Score=126.81 Aligned_cols=116 Identities=21% Similarity=0.156 Sum_probs=73.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCC-----------ccccccccc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG-----------QEDYNRLRP 72 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G-----------~~~~~~~~~ 72 (175)
...++|+++|.+|||||||++++.+..+.....+.... ....+... .+.+||||| ++.++..+.
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~-~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTR-KPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIV 81 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceee-CceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence 35789999999999999999999988765544443311 11222222 589999999 445554444
Q ss_pred cccc----CccEEEEEEECCChhhHHH---------HHHHHHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 73 LSYR----GADVFILAFSLISKASYEN---------VAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 73 ~~~~----~~d~vi~v~d~~~~~s~~~---------~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
.++. .++++++|.|.++...... ....+...+.. .++|+++|+||+|+.+.+
T Consensus 82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~ 146 (201)
T PRK04213 82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKIKNR 146 (201)
T ss_pred HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccccCcH
Confidence 4543 3567777877754322100 00112222332 379999999999996543
No 160
>PRK11058 GTPase HflX; Provisional
Probab=99.74 E-value=2.5e-17 Score=133.67 Aligned_cols=117 Identities=21% Similarity=0.184 Sum_probs=84.1
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCC-CCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccc--cccc------cccccC
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY--NRLR------PLSYRG 77 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~--~~~~------~~~~~~ 77 (175)
.+|+++|.+|||||||+|+|.+.... .+..+++.+.....+...+. ..+.+|||+|..+. .... ...++.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 58999999999999999999986643 23334444444445555442 25789999997432 1111 134689
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCccc
Q 030525 78 ADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125 (175)
Q Consensus 78 ~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~ 125 (175)
+|++++|+|++++.+++.+ ..|...+.... .+.|+++|+||+|+.+.
T Consensus 277 ADlIL~VvDaS~~~~~e~l-~~v~~iL~el~~~~~pvIiV~NKiDL~~~ 324 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENI-EAVNTVLEEIDAHEIPTLLVMNKIDMLDD 324 (426)
T ss_pred CCEEEEEEeCCCccHHHHH-HHHHHHHHHhccCCCCEEEEEEcccCCCc
Confidence 9999999999999888876 55655555443 47999999999999643
No 161
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.74 E-value=2.2e-17 Score=119.67 Aligned_cols=117 Identities=17% Similarity=0.154 Sum_probs=77.3
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEE-EEEECCeEEEEEEEeCCCccc----------cccc
Q 030525 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQED----------YNRL 70 (175)
Q Consensus 2 ~~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~~~D~~G~~~----------~~~~ 70 (175)
...+..+|+|+|.+|+|||||++++.+..+.....++....... ....++ .+.+|||||... +...
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH
Confidence 34578899999999999999999999876433333333222111 122232 589999999532 2222
Q ss_pred cccccc---CccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 71 RPLSYR---GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 71 ~~~~~~---~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
...+++ .+|++++|+|.+++.+.... .+...+.. .+.|+++|+||+|+.++
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~--~~~pviiv~nK~D~~~~ 144 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRE--RGIPVLIVLTKADKLKK 144 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCCH
Confidence 233444 46899999999876555544 33344443 37899999999999754
No 162
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.73 E-value=1.4e-17 Score=114.91 Aligned_cols=118 Identities=27% Similarity=0.581 Sum_probs=105.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
-.+||.++|++..|||||+-.|.++++.+.+..+.+..+ .+++.+.+..+.+.+||.+|++++..+.+...+++-++++
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF 98 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF 98 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence 468999999999999999999999999877777776654 5678899999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCc
Q 030525 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 123 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 123 (175)
+||++.++++..+ ..|+.+.+..++..-=++||+|-|+.
T Consensus 99 mFDLt~r~TLnSi-~~WY~QAr~~NktAiPilvGTKyD~f 137 (205)
T KOG1673|consen 99 MFDLTRRSTLNSI-KEWYRQARGLNKTAIPILVGTKYDLF 137 (205)
T ss_pred EEecCchHHHHHH-HHHHHHHhccCCccceEEeccchHhh
Confidence 9999999999999 99999999877544447899999964
No 163
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.73 E-value=2.1e-17 Score=127.24 Aligned_cols=111 Identities=18% Similarity=0.239 Sum_probs=78.3
Q ss_pred EEEEECCCCCCHHHHHHHhhcCCCC--CCCCCCeeeeeEEEEEECCeEEEEEEEeCCCccccc-cc-------ccccccC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN-RL-------RPLSYRG 77 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-~~-------~~~~~~~ 77 (175)
+|+++|.+|||||||+|++.+.++. .+...|+..... .+...+ ..++.+|||||..... .. ...++.+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~-~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRIS-GIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEE-EEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 6899999999999999999988753 233344444332 233332 2468999999975421 11 2345789
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 78 ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 78 ~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
+|++++|+|+++..+.+ +.+...+.. .+.|+++|+||+|+.+.
T Consensus 80 aDvvl~VvD~~~~~~~~---~~i~~~l~~--~~~p~ilV~NK~Dl~~~ 122 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG---EFVLTKLQN--LKRPVVLTRNKLDNKFK 122 (270)
T ss_pred CCEEEEEEECCCCCchH---HHHHHHHHh--cCCCEEEEEECeeCCCH
Confidence 99999999999876664 345555544 37899999999999743
No 164
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.73 E-value=3.3e-17 Score=129.12 Aligned_cols=119 Identities=21% Similarity=0.203 Sum_probs=86.5
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCC-CCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccc----ccccccc---ccC
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY----NRLRPLS---YRG 77 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----~~~~~~~---~~~ 77 (175)
...|+++|.++||||||++++..... ..++..|+.......+..++ ...+.+||+||..+. ..+...+ +.+
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 45899999999999999999997653 33444555444444444443 367899999997432 1233333 457
Q ss_pred ccEEEEEEECCCh---hhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCcccc
Q 030525 78 ADVFILAFSLISK---ASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 78 ~d~vi~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~ 126 (175)
++++++|+|+++. .+++.+ ..|..++..+. .+.|+++|+||+|+.++.
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l-~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~ 289 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDY-EIIRNELKKYSPELAEKPRIVVLNKIDLLDEE 289 (329)
T ss_pred hCEEEEEEcCccccccCHHHHH-HHHHHHHHHhhhhhccCCEEEEEeCccCCChH
Confidence 9999999999987 677777 78888776653 478999999999997553
No 165
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.73 E-value=2.7e-17 Score=119.30 Aligned_cols=111 Identities=21% Similarity=0.140 Sum_probs=81.1
Q ss_pred EEEEECCCCCCHHHHHHHhhcCCCCCCCCCCe-----------------eeeeEEEEEECCeEEEEEEEeCCCccccccc
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-----------------FDNFSANVVVDGSTVNLGLWDTAGQEDYNRL 70 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~-----------------~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~ 70 (175)
+|+++|.+|+|||||+++++............ .......... ....+.+||+||+.++...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW--PDRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee--CCEEEEEEeCCCcHHHHHH
Confidence 58999999999999999999876654332211 1111111222 2467999999999888777
Q ss_pred ccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcc
Q 030525 71 RPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (175)
Q Consensus 71 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 124 (175)
+..+++.+|++++|+|.+++.+.... .++..+.. .+.|+++|+||+|+..
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~~i~iv~nK~D~~~ 128 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQTR--EHLRIARE--GGLPIIVAINKIDRVG 128 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHHH--HHHHHHHH--CCCCeEEEEECCCCcc
Confidence 77889999999999999877655433 44444443 4799999999999976
No 166
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.73 E-value=3.9e-17 Score=133.48 Aligned_cols=112 Identities=24% Similarity=0.202 Sum_probs=80.3
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCC--CCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccc--------ccccccccc
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY--------NRLRPLSYR 76 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~--------~~~~~~~~~ 76 (175)
.+|+++|.+|||||||+|++.+... ..+..+++.+.....+..++ ..+.+|||||.+.. ......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 5899999999999999999998763 34444444455555555665 67999999998761 222334678
Q ss_pred CccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcc
Q 030525 77 GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (175)
Q Consensus 77 ~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 124 (175)
.+|++++|+|.+++.+.... .+...+.+. +.|+++|+||+|+.+
T Consensus 80 ~ad~il~vvd~~~~~~~~~~--~~~~~l~~~--~~piilv~NK~D~~~ 123 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADE--EIAKILRKS--NKPVILVVNKVDGPD 123 (435)
T ss_pred hCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCcEEEEEECccCcc
Confidence 99999999999876444322 223333332 689999999999764
No 167
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.72 E-value=6.9e-17 Score=115.22 Aligned_cols=114 Identities=21% Similarity=0.280 Sum_probs=78.9
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCCC--CCCCCCeeeeeEEEEEECCeEEEEEEEeCCCccccccc-----------cc
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-----------RP 72 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~-----------~~ 72 (175)
.++|+++|++|+|||||++++.+.... .+..+++..........++ ..+.+|||||..+.... ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 579999999999999999999986532 2222333333333444444 34789999997543110 11
Q ss_pred ccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 73 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 73 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
..+..+|++++|+|++++.+.... .+...+.. .+.|+++++||+|+.+.
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~--~~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL--RIAGLILE--EGKALVIVVNKWDLVEK 128 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH--HHHHHHHh--cCCCEEEEEeccccCCc
Confidence 245789999999999998776654 34444433 36899999999999765
No 168
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.72 E-value=1.1e-16 Score=130.50 Aligned_cols=113 Identities=21% Similarity=0.258 Sum_probs=84.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCC--CCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccc-----------
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR----------- 71 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~----------- 71 (175)
..+||+++|.+|+|||||++++++... ..+..+++.+.....+..++. .+.+|||||..++....
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHHH
Confidence 458999999999999999999997653 344445555555555555553 68999999976544322
Q ss_pred cccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCc
Q 030525 72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 123 (175)
Q Consensus 72 ~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 123 (175)
..+++.+|++++|+|++++.+.... .+...+.. .+.|+++|+||+|+.
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~--~~~~~~~~--~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDL--RIAGLILE--AGKALVIVVNKWDLV 296 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHH--HHHHHHHH--cCCcEEEEEECcccC
Confidence 2357899999999999988777765 34444443 378999999999997
No 169
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.71 E-value=6.2e-17 Score=136.28 Aligned_cols=117 Identities=18% Similarity=0.158 Sum_probs=86.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCC-------CCCCCCCCe------eeeeE-E--EEEE---CCeEEEEEEEeCCCcc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNT-------FPTDYVPTV------FDNFS-A--NVVV---DGSTVNLGLWDTAGQE 65 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~-------~~~~~~~t~------~~~~~-~--~~~~---~~~~~~~~~~D~~G~~ 65 (175)
..-|++++|..++|||||+++|+... +...+..+. +.... . .+.. ++..+.+++|||||+.
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~ 81 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 81 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH
Confidence 35689999999999999999999642 111111110 11111 1 1222 4667899999999999
Q ss_pred cccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 66 DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 66 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
+|......+++.+|++++|+|+++..+.+.. ..|..... .++|+++|+||+|+.+.
T Consensus 82 dF~~~v~~~l~~aD~aILVvDat~g~~~qt~-~~~~~~~~---~~ipiIiViNKiDl~~~ 137 (595)
T TIGR01393 82 DFSYEVSRSLAACEGALLLVDAAQGIEAQTL-ANVYLALE---NDLEIIPVINKIDLPSA 137 (595)
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCCCCHhHH-HHHHHHHH---cCCCEEEEEECcCCCcc
Confidence 9988888899999999999999988777766 55655443 37899999999999643
No 170
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.71 E-value=1.1e-16 Score=113.23 Aligned_cols=113 Identities=17% Similarity=0.171 Sum_probs=75.4
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCCCCC--CCCCeeeeeEEEEEECCeEEEEEEEeCCCccccccc--------ccccc
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTD--YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLSY 75 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~~~ 75 (175)
..+|+++|++|+|||||++++.+...... ...+...... .........+.+|||||....... ....+
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIR--GIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL 80 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEE--EEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence 57899999999999999999998765322 1122211111 122333467999999997543221 22347
Q ss_pred cCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcc
Q 030525 76 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (175)
Q Consensus 76 ~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 124 (175)
..+|++++|+|.+++.+... ..+...+... +.|+++|+||+|+..
T Consensus 81 ~~~d~i~~v~d~~~~~~~~~--~~~~~~~~~~--~~~~iiv~nK~Dl~~ 125 (168)
T cd04163 81 KDVDLVLFVVDASEPIGEGD--EFILELLKKS--KTPVILVLNKIDLVK 125 (168)
T ss_pred HhCCEEEEEEECCCccCchH--HHHHHHHHHh--CCCEEEEEEchhccc
Confidence 88999999999998722221 3344444432 689999999999974
No 171
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.70 E-value=1e-16 Score=130.78 Aligned_cols=113 Identities=24% Similarity=0.286 Sum_probs=81.0
Q ss_pred EEEEECCCCCCHHHHHHHhhcCCC--CCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCccc--------ccccccccccC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED--------YNRLRPLSYRG 77 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~--------~~~~~~~~~~~ 77 (175)
+|+++|.+|||||||+|++.+... ..+..+++.+.....+..++ ..+.+|||||... +......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 589999999999999999998653 33444444555555555555 4699999999632 22334456889
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 78 ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 78 ~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
+|++++|+|.+++.+... ..+...+++ .+.|+++|+||+|+.+.+
T Consensus 79 ad~vl~vvD~~~~~~~~d--~~i~~~l~~--~~~piilVvNK~D~~~~~ 123 (429)
T TIGR03594 79 ADVILFVVDGREGLTPED--EEIAKWLRK--SGKPVILVANKIDGKKED 123 (429)
T ss_pred CCEEEEEEeCCCCCCHHH--HHHHHHHHH--hCCCEEEEEECccCCccc
Confidence 999999999987654443 234444444 368999999999987544
No 172
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.70 E-value=5.4e-17 Score=120.85 Aligned_cols=112 Identities=20% Similarity=0.239 Sum_probs=79.9
Q ss_pred EEEEECCCCCCHHHHHHHhhcCCCCCCC-----------CCCe------eeee---EEEEEE---CCeEEEEEEEeCCCc
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNTFPTDY-----------VPTV------FDNF---SANVVV---DGSTVNLGLWDTAGQ 64 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~~~~~~-----------~~t~------~~~~---~~~~~~---~~~~~~~~~~D~~G~ 64 (175)
+|+++|..++|||||+++|+........ ..+. +... ...... ++..+.+++|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999975433210 0000 0010 011111 355789999999999
Q ss_pred ccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCc
Q 030525 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 123 (175)
Q Consensus 65 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 123 (175)
.+|......++..+|++++|+|+++..+... +.|+..... .+.|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~--~~~~~~~~~--~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT--ERLIRHAIL--EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEECcccC
Confidence 9987777788999999999999988776654 345554443 358999999999975
No 173
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.70 E-value=2.6e-16 Score=132.12 Aligned_cols=115 Identities=18% Similarity=0.217 Sum_probs=83.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCe-eeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
+..+|+++|..++|||||++++.+..+.....+.. .+.....+..++. ..+.+|||||+++|..++...+..+|++++
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 56799999999999999999999887765543332 2222233444332 278999999999999988888999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcc
Q 030525 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 124 (175)
|+|+++...-+.. +.| ..... .++|+++++||+|+.+
T Consensus 165 VVda~dgv~~qT~-e~i-~~~~~--~~vPiIVviNKiDl~~ 201 (587)
T TIGR00487 165 VVAADDGVMPQTI-EAI-SHAKA--ANVPIIVAINKIDKPE 201 (587)
T ss_pred EEECCCCCCHhHH-HHH-HHHHH--cCCCEEEEEECccccc
Confidence 9999874322222 222 22222 3789999999999964
No 174
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.69 E-value=9.5e-17 Score=117.58 Aligned_cols=114 Identities=17% Similarity=0.110 Sum_probs=71.6
Q ss_pred eEEEEECCCCCCHHHHHHHhhcC----CCCCC----CCCCe-eeee-EEEEE----------ECCeEEEEEEEeCCCccc
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSN----TFPTD----YVPTV-FDNF-SANVV----------VDGSTVNLGLWDTAGQED 66 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~----~~~~~----~~~t~-~~~~-~~~~~----------~~~~~~~~~~~D~~G~~~ 66 (175)
+||+++|++++|||||+++|+.. .+... ...++ ...+ ...+. ..+....+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999962 11111 11112 1111 11111 123367899999999865
Q ss_pred ccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcc
Q 030525 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (175)
Q Consensus 67 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 124 (175)
+..........+|++++|+|+++....... +.+. .... .+.|+++|+||+|+..
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~-~~~~-~~~~--~~~~~iiv~NK~Dl~~ 134 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTA-ECLV-IGEI--LCKKLIVVLNKIDLIP 134 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHH-HHHH-HHHH--cCCCEEEEEECcccCC
Confidence 433222335678999999999875444332 2222 1222 2579999999999864
No 175
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.69 E-value=2.2e-16 Score=115.61 Aligned_cols=116 Identities=19% Similarity=0.148 Sum_probs=75.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcc----------cccccccc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE----------DYNRLRPL 73 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~----------~~~~~~~~ 73 (175)
+...+|+++|++|||||||++++++..+.....++.+......... ....+.+|||||.. .+......
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~ 99 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--VNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--cCCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence 4578999999999999999999998775544444433222111111 12579999999953 22223334
Q ss_pred cccC---ccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 74 SYRG---ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 74 ~~~~---~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
+++. ++++++++|.+++.+.... .+...+.. .+.|+++++||+|+.+.
T Consensus 100 ~~~~~~~~~~~~~v~d~~~~~~~~~~--~i~~~l~~--~~~~~iiv~nK~Dl~~~ 150 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRHPLKELDL--QMIEWLKE--YGIPVLIVLTKADKLKK 150 (196)
T ss_pred HHHhCccceEEEEEEecCCCCCHHHH--HHHHHHHH--cCCcEEEEEECcccCCH
Confidence 4443 4678888998876544332 22333333 36899999999998654
No 176
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.68 E-value=4.8e-16 Score=125.81 Aligned_cols=117 Identities=21% Similarity=0.189 Sum_probs=83.5
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCC-CCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCccc----cccccccc---ccCc
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----YNRLRPLS---YRGA 78 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~----~~~~~~~~---~~~~ 78 (175)
..|+++|.||||||||++++.+.+. ..++..|+.......+..++ ...+.+||+||... ...+...+ +.++
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 4899999999999999999997653 23444555443333333331 35799999999642 22233344 4569
Q ss_pred cEEEEEEECCCh---hhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCccc
Q 030525 79 DVFILAFSLISK---ASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDD 125 (175)
Q Consensus 79 d~vi~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~ 125 (175)
+++++|+|+++. +.++.. ..|..++..+. .+.|.++|+||+|+.+.
T Consensus 238 ~llI~VID~s~~~~~dp~e~~-~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~ 289 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDY-EKINKELKLYNPRLLERPQIVVANKMDLPEA 289 (424)
T ss_pred CEEEEEEeCCccccCChHHHH-HHHHHHHhhhchhccCCcEEEEEeCCCCcCC
Confidence 999999999865 667776 77888887654 37899999999998543
No 177
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.68 E-value=1.7e-16 Score=119.98 Aligned_cols=113 Identities=22% Similarity=0.165 Sum_probs=79.8
Q ss_pred EEEEECCCCCCHHHHHHHhhcCCCCCC------CCCCeee----------e-eEEEEEECCeEEEEEEEeCCCccccccc
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNTFPTD------YVPTVFD----------N-FSANVVVDGSTVNLGLWDTAGQEDYNRL 70 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~~~~~------~~~t~~~----------~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~ 70 (175)
||+++|..|+|||||+++++...-... ...+..+ . ............++++|||||+.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 689999999999999999985311100 0000000 1 1112223334578999999999998887
Q ss_pred ccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcc
Q 030525 71 RPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (175)
Q Consensus 71 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 124 (175)
...+++.+|++++|+|+++...... +.+...+.+ .++|+++++||+|+.+
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~~--~~~~~~~~~--~~~P~iivvNK~D~~~ 130 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQT--RILWRLLRK--LNIPTIIFVNKIDRAG 130 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHHH--HHHHHHHHH--cCCCEEEEEECccccC
Confidence 7788999999999999998755433 455555554 3789999999999975
No 178
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.68 E-value=2.8e-16 Score=135.16 Aligned_cols=115 Identities=26% Similarity=0.345 Sum_probs=85.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCC--CCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCccc----------ccccc-
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----------YNRLR- 71 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~----------~~~~~- 71 (175)
...||+++|.+|||||||+|++++... ..+..+++.+.....+..++. .+.+|||||..+ +..+.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHH
Confidence 457999999999999999999998764 445566666666666666665 466999999642 11111
Q ss_pred cccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 72 ~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
...++++|++++|+|+++..+.+.. . +...+.. .+.|+++|+||+|+.+.
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~-~-i~~~~~~--~~~piIiV~NK~DL~~~ 576 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDL-K-VMSMAVD--AGRALVLVFNKWDLMDE 576 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHH-H-HHHHHHH--cCCCEEEEEEchhcCCh
Confidence 2346889999999999998888776 4 4444443 37899999999999753
No 179
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.68 E-value=6.6e-16 Score=119.14 Aligned_cols=117 Identities=18% Similarity=0.202 Sum_probs=75.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCC----------CCCCe-eeeeEEEEEECCeEEEEEEEeCCCcccc------
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD----------YVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDY------ 67 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~----------~~~t~-~~~~~~~~~~~~~~~~~~~~D~~G~~~~------ 67 (175)
-.+||+++|.+|+|||||+|++++..+... ..++. .......+..++..+++.+|||||-.+.
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 468999999999999999999998876433 23333 2233445556788899999999994322
Q ss_pred --------------------ccccccccc--CccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 68 --------------------NRLRPLSYR--GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 68 --------------------~~~~~~~~~--~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
...+...+. ++|+++++.+.+.. .........++.+. ..+|+++|+||+|+...
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~---~~v~vi~VinK~D~l~~ 158 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS---KRVNIIPVIAKADTLTP 158 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh---ccCCEEEEEECCCcCCH
Confidence 111223444 46666666665532 22221123444444 37999999999998553
No 180
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.68 E-value=3e-16 Score=133.92 Aligned_cols=118 Identities=17% Similarity=0.223 Sum_probs=85.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCee---eeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF---DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~---~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 80 (175)
++..+|+++|..++|||||++++....+.....+... ..+...+..++....+.+|||||++.|..++..+++.+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 3567999999999999999999998776543332221 1222233334456889999999999999988889999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 81 FILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 81 vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
+|+|+|+++....+.. +.|. .+.. .++|+++++||+|+.+.
T Consensus 322 aILVVDA~dGv~~QT~-E~I~-~~k~--~~iPiIVViNKiDl~~~ 362 (742)
T CHL00189 322 AILIIAADDGVKPQTI-EAIN-YIQA--ANVPIIVAINKIDKANA 362 (742)
T ss_pred EEEEEECcCCCChhhH-HHHH-HHHh--cCceEEEEEECCCcccc
Confidence 9999999875332222 2222 2222 47899999999999753
No 181
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.67 E-value=9.6e-16 Score=131.78 Aligned_cols=115 Identities=19% Similarity=0.239 Sum_probs=83.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCe-eeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
++..+|+++|..++|||||+++|....+.....+.. .......+..++ ..+.||||||++.|..++...++.+|++|
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaI 365 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVV 365 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence 467799999999999999999999877654433322 222223344444 57899999999999998888899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcc
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 124 (175)
+|+|+++...-+.. +.|. .+.. .++|+++++||+|+.+
T Consensus 366 LVVdAddGv~~qT~-e~i~-~a~~--~~vPiIVviNKiDl~~ 403 (787)
T PRK05306 366 LVVAADDGVMPQTI-EAIN-HAKA--AGVPIIVAINKIDKPG 403 (787)
T ss_pred EEEECCCCCCHhHH-HHHH-HHHh--cCCcEEEEEECccccc
Confidence 99999874322222 2222 2222 3799999999999965
No 182
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.66 E-value=9.4e-16 Score=117.76 Aligned_cols=115 Identities=18% Similarity=0.166 Sum_probs=78.8
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCCC---------C-Ceee-----------eeEEEEEECCeEEEEEEEeCCCcc
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYV---------P-TVFD-----------NFSANVVVDGSTVNLGLWDTAGQE 65 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~~---------~-t~~~-----------~~~~~~~~~~~~~~~~~~D~~G~~ 65 (175)
-+|+++|.+|+|||||+++++...-..... . +..+ ............+++++|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 589999999999999999998421110000 0 1011 011222344556889999999999
Q ss_pred cccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 66 DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 66 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
+|.......++.+|++++|+|.++...... +.+...... .++|+++++||+|+.+.
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~~--~~i~~~~~~--~~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQT--RKLFEVCRL--RGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHHH--HHHHHHHHh--cCCCEEEEEECCccCCC
Confidence 887766678899999999999987643222 344444443 37899999999998654
No 183
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.66 E-value=3.2e-16 Score=110.61 Aligned_cols=113 Identities=18% Similarity=0.231 Sum_probs=77.8
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCC-CCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccc------cccccc--cC
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR------LRPLSY--RG 77 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~~~~~--~~ 77 (175)
++|+++|.||||||||+|++.+... ..++..++.+.....+...+ ..+.++|+||.-.... ....++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 5899999999999999999998764 34555666665555666666 6799999999533222 222333 68
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 78 ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 78 ~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
.|+++.|.|.++.+ +. -++..++... +.|+++|.||+|....+.
T Consensus 79 ~D~ii~VvDa~~l~---r~-l~l~~ql~e~--g~P~vvvlN~~D~a~~~g 122 (156)
T PF02421_consen 79 PDLIIVVVDATNLE---RN-LYLTLQLLEL--GIPVVVVLNKMDEAERKG 122 (156)
T ss_dssp SSEEEEEEEGGGHH---HH-HHHHHHHHHT--TSSEEEEEETHHHHHHTT
T ss_pred CCEEEEECCCCCHH---HH-HHHHHHHHHc--CCCEEEEEeCHHHHHHcC
Confidence 99999999998643 22 2344455543 799999999999877655
No 184
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.65 E-value=1.5e-15 Score=107.77 Aligned_cols=119 Identities=22% Similarity=0.286 Sum_probs=89.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCC--------CCCCC---Ce-eeeeEEEEEECCeEEEEEEEeCCCcccccccc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP--------TDYVP---TV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR 71 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~--------~~~~~---t~-~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~ 71 (175)
-...||+|+|+-++||||++..+...... ..... ++ ..++.. ...+ ....+++++||||++|+-++
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~-~~~~-~~~~v~LfgtPGq~RF~fm~ 85 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGS-IELD-EDTGVHLFGTPGQERFKFMW 85 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccc-eEEc-CcceEEEecCCCcHHHHHHH
Confidence 45779999999999999999999976531 11111 22 222222 2222 23579999999999999999
Q ss_pred cccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 72 ~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
..+.+++.+.|++.|.+.+..+ +. +..++.+....+ +|++++.||.||.+...
T Consensus 86 ~~l~~ga~gaivlVDss~~~~~-~a-~~ii~f~~~~~~-ip~vVa~NK~DL~~a~p 138 (187)
T COG2229 86 EILSRGAVGAIVLVDSSRPITF-HA-EEIIDFLTSRNP-IPVVVAINKQDLFDALP 138 (187)
T ss_pred HHHhCCcceEEEEEecCCCcch-HH-HHHHHHHhhccC-CCEEEEeeccccCCCCC
Confidence 9999999999999999999988 44 566666665433 99999999999998743
No 185
>PRK00089 era GTPase Era; Reviewed
Probab=99.65 E-value=1.1e-15 Score=118.89 Aligned_cols=115 Identities=20% Similarity=0.209 Sum_probs=76.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCC--CCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccc--------cccc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR--------LRPL 73 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------~~~~ 73 (175)
.+.-.|+++|.+|||||||+|++++.... .....++........ .. ....+.+|||||...... ....
T Consensus 3 ~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~-~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~ 80 (292)
T PRK00089 3 FKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIV-TE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWS 80 (292)
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEE-Ec-CCceEEEEECCCCCCchhHHHHHHHHHHHH
Confidence 35667999999999999999999987653 222223333222222 22 236899999999754321 1223
Q ss_pred cccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcc
Q 030525 74 SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (175)
Q Consensus 74 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 124 (175)
.+.++|++++|+|+++..+ .....+...+.. .+.|+++|+||+|+..
T Consensus 81 ~~~~~D~il~vvd~~~~~~--~~~~~i~~~l~~--~~~pvilVlNKiDl~~ 127 (292)
T PRK00089 81 SLKDVDLVLFVVDADEKIG--PGDEFILEKLKK--VKTPVILVLNKIDLVK 127 (292)
T ss_pred HHhcCCEEEEEEeCCCCCC--hhHHHHHHHHhh--cCCCEEEEEECCcCCC
Confidence 5689999999999988322 221344444443 3689999999999973
No 186
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.65 E-value=8.1e-16 Score=129.70 Aligned_cols=120 Identities=18% Similarity=0.137 Sum_probs=85.4
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHhhcC--CCCCCCCC-C----------eeeee---EEEEEE---CCeEEEEEEEeCC
Q 030525 2 SASRFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVP-T----------VFDNF---SANVVV---DGSTVNLGLWDTA 62 (175)
Q Consensus 2 ~~~~~~ki~v~G~~~~GKTsli~~l~~~--~~~~~~~~-t----------~~~~~---~~~~~~---~~~~~~~~~~D~~ 62 (175)
..+..-|++|+|..++|||||+.+|+.. .+...... + .+... ...+.. ++..+.+++||||
T Consensus 3 ~~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTP 82 (600)
T PRK05433 3 DMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTP 82 (600)
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECC
Confidence 3456679999999999999999999853 22111000 0 00111 111111 5567899999999
Q ss_pred CcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 63 G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
|+.+|...+..+++.+|++++|+|+++....+.. ..|..... .++|+++|+||+|+.+.
T Consensus 83 Gh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~-~~~~~~~~---~~lpiIvViNKiDl~~a 141 (600)
T PRK05433 83 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALE---NDLEIIPVLNKIDLPAA 141 (600)
T ss_pred CcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHH---CCCCEEEEEECCCCCcc
Confidence 9999988888899999999999999987665555 55554433 37899999999999653
No 187
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.65 E-value=6.9e-16 Score=115.41 Aligned_cols=112 Identities=16% Similarity=0.159 Sum_probs=78.4
Q ss_pred EEEEECCCCCCHHHHHHHhhcCCC--CCCCCCCe--ee----------e---eEEEEEE--------CCeEEEEEEEeCC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTV--FD----------N---FSANVVV--------DGSTVNLGLWDTA 62 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~~--~~~~~~t~--~~----------~---~~~~~~~--------~~~~~~~~~~D~~ 62 (175)
+|+++|..++|||||+.+|+...- ........ .+ . ....... ++..+.+++||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 799999999999999999985321 11100000 00 0 0001111 2447889999999
Q ss_pred CcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCc
Q 030525 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 123 (175)
Q Consensus 63 G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 123 (175)
|+.+|......+++.+|++++|+|+++..+.+.. ..|. .... .++|+++|+||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~-~~~~--~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLR-QALK--ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHH-HHHH--cCCCEEEEEECCCcc
Confidence 9999988888899999999999999987766553 3333 3332 368999999999976
No 188
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.65 E-value=1.7e-15 Score=124.32 Aligned_cols=118 Identities=18% Similarity=0.177 Sum_probs=80.8
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCC-CCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccc----ccc---ccccccC
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY----NRL---RPLSYRG 77 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----~~~---~~~~~~~ 77 (175)
..+|+++|.||||||||++++.+... ..++..|+.......+...+ ..+.+||+||...- ..+ ....+.+
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier 236 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER 236 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence 45899999999999999999997654 33455555444444444544 57999999996321 111 1234678
Q ss_pred ccEEEEEEECCCh----hhHHHHHHHHHHHHhhcC------------CCCcEEEEEeCCCCcccc
Q 030525 78 ADVFILAFSLISK----ASYENVAKKWIPELRHYA------------PGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 78 ~d~vi~v~d~~~~----~s~~~~~~~~~~~~~~~~------------~~~p~ilv~nK~Dl~~~~ 126 (175)
+|++++|+|+++. ..++.+ ..|..++..+. .+.|+++|+||+|+.+.+
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~-~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~ 300 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDI-DALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAR 300 (500)
T ss_pred cCEEEEEECCcccccccCchhhH-HHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhH
Confidence 9999999999853 344444 44554444332 368999999999997654
No 189
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.65 E-value=1.8e-15 Score=102.99 Aligned_cols=119 Identities=24% Similarity=0.354 Sum_probs=96.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
.+.+||+.+|-.++||||++..+.+..... -.||-+. ..+.+..++ .+.+++||.+|+...+..|..||.+.|++|+
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~h-ltpT~GF-n~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lIy 91 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRH-LTPTNGF-NTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLIY 91 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhh-ccccCCc-ceEEEeecC-cEEEEEEecCCccccchhhhhhhhccceEEE
Confidence 468999999999999999999998765432 2333322 234445554 5789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCccc
Q 030525 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~ 125 (175)
|.|.+|+..|+++.+.+.+.+.... ..+|+++.+||.|+.-+
T Consensus 92 VIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllta 134 (185)
T KOG0074|consen 92 VIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTA 134 (185)
T ss_pred EEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhh
Confidence 9999999999998777777666544 58999999999997543
No 190
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.64 E-value=2e-15 Score=130.02 Aligned_cols=115 Identities=20% Similarity=0.210 Sum_probs=79.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCC--CCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccc--------ccccccc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY--------NRLRPLS 74 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~--------~~~~~~~ 74 (175)
...+|+++|.+|||||||+|++++... ..+...++.+........++ ..+.+|||||.+.. ......+
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 346899999999999999999997654 23333333333333334444 46899999997631 1222346
Q ss_pred ccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 75 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
++.+|++++|+|.++.-.... ..|...+.. .+.|+++|+||+|+.+.
T Consensus 352 ~~~aD~iL~VvDa~~~~~~~d--~~i~~~Lr~--~~~pvIlV~NK~D~~~~ 398 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLTSTD--ERIVRMLRR--AGKPVVLAVNKIDDQAS 398 (712)
T ss_pred HHhCCEEEEEEECCCCCCHHH--HHHHHHHHh--cCCCEEEEEECcccccc
Confidence 789999999999986433222 356666654 47999999999998653
No 191
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.64 E-value=1.5e-16 Score=114.65 Aligned_cols=119 Identities=19% Similarity=0.172 Sum_probs=73.3
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccc---cccCccEEE
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPL---SYRGADVFI 82 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~---~~~~~d~vi 82 (175)
.-.|+++|++|+|||+|+.+|..+...+...+. .......+ .+.....+.++|+||+.+.+..... +...+.+||
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~~~~~-~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II 80 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNIAYNV-NNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII 80 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEEECCG-SSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCceEEe-ecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence 346899999999999999999998665443333 22221111 1233456899999999987763333 477899999
Q ss_pred EEEECCC-hhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCcccc
Q 030525 83 LAFSLIS-KASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 83 ~v~d~~~-~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~ 126 (175)
+|.|.+. .......-+++++.+.... ..+|++|+.||.|+...+
T Consensus 81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 9999874 3445444355555544332 579999999999987654
No 192
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.64 E-value=4.1e-15 Score=121.58 Aligned_cols=115 Identities=23% Similarity=0.284 Sum_probs=82.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCC--CCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCccccccc-----------c
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-----------R 71 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~-----------~ 71 (175)
..++|+++|.+|+|||||++++++... .....+++.+.....+..++ ..+.+|||||..+.... .
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 568999999999999999999997542 33334455554444444554 45789999996432211 1
Q ss_pred cccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 72 ~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
..+++.+|++++|+|++++.+.+.. .+...+.. .+.|+++|+||+|+.++
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~--~i~~~~~~--~~~~~ivv~NK~Dl~~~ 299 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDL--RIAGLALE--AGRALVIVVNKWDLVDE 299 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCcEEEEEECccCCCH
Confidence 2357899999999999988777665 34444444 36899999999999743
No 193
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.64 E-value=1.2e-15 Score=121.84 Aligned_cols=134 Identities=21% Similarity=0.227 Sum_probs=96.4
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCC--CCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCccccc---------ccccccc
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN---------RLRPLSY 75 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~---------~~~~~~~ 75 (175)
..|+++|-||||||||+|||++... ..++..++.+.........+. .|.++||+|-+... ......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~--~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGR--EFILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCc--eEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 5799999999999999999998754 566677777777776666664 49999999976432 1123457
Q ss_pred cCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccchhh-----ccCCCCccccccchhcc
Q 030525 76 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF-----IDHPGAVPITTAQVDYK 146 (175)
Q Consensus 76 ~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~-----~~~~~~~~vs~~~~~~~ 146 (175)
..||++++|+|....-+-.. +.+.+.+.+ .+.|+++|+||+|-.+.+... ..-....++|+.++...
T Consensus 82 ~eADvilfvVD~~~Git~~D--~~ia~~Lr~--~~kpviLvvNK~D~~~~e~~~~efyslG~g~~~~ISA~Hg~Gi 153 (444)
T COG1160 82 EEADVILFVVDGREGITPAD--EEIAKILRR--SKKPVILVVNKIDNLKAEELAYEFYSLGFGEPVPISAEHGRGI 153 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHH--HHHHHHHHh--cCCCEEEEEEcccCchhhhhHHHHHhcCCCCceEeehhhccCH
Confidence 89999999999986544433 345555553 468999999999987444322 23445677888877643
No 194
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.64 E-value=1.6e-15 Score=127.32 Aligned_cols=112 Identities=21% Similarity=0.168 Sum_probs=78.8
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCe----eeeeEEE-E------------EECCeEEEEEEEeCCCccccc
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV----FDNFSAN-V------------VVDGSTVNLGLWDTAGQEDYN 68 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~----~~~~~~~-~------------~~~~~~~~~~~~D~~G~~~~~ 68 (175)
.--|+++|.+++|||||++++.+..+.....+.. +..+... . .++.....+.+|||||++.|.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 3459999999999999999999877654322211 1111100 0 000111238899999999999
Q ss_pred ccccccccCccEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcc
Q 030525 69 RLRPLSYRGADVFILAFSLIS---KASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (175)
Q Consensus 69 ~~~~~~~~~~d~vi~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 124 (175)
.++..+++.+|++++|+|+++ +++++.+ . .+.. .+.|+++++||+|+.+
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i-~----~l~~--~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEAL-N----ILRM--YKTPFVVAANKIDRIP 135 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHHH-H----HHHH--cCCCEEEEEECCCccc
Confidence 988889999999999999997 4555554 2 2222 3789999999999964
No 195
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.63 E-value=3e-15 Score=104.64 Aligned_cols=112 Identities=22% Similarity=0.252 Sum_probs=78.9
Q ss_pred EECCCCCCHHHHHHHhhcCCCC--CCCCCCeeeeeEEEEEECCeEEEEEEEeCCCccccccccc-------ccccCccEE
Q 030525 11 TVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP-------LSYRGADVF 81 (175)
Q Consensus 11 v~G~~~~GKTsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~-------~~~~~~d~v 81 (175)
++|++|+|||||++++.+.... ....+++............ ...+.+||+||......... .+++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999976543 1222333333333333321 46799999999876554332 367899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 82 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
++++|.++..+.... . |...... .+.|+++|+||+|+.....
T Consensus 80 l~v~~~~~~~~~~~~-~-~~~~~~~--~~~~~ivv~nK~D~~~~~~ 121 (163)
T cd00880 80 LFVVDADLRADEEEE-K-LLELLRE--RGKPVLLVLNKIDLLPEEE 121 (163)
T ss_pred EEEEeCCCCCCHHHH-H-HHHHHHh--cCCeEEEEEEccccCChhh
Confidence 999999988877766 3 4444333 4899999999999876543
No 196
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.63 E-value=2.7e-15 Score=126.25 Aligned_cols=111 Identities=24% Similarity=0.257 Sum_probs=80.5
Q ss_pred eEEEEECCCCCCHHHHHHHhhcC---CCCCCCCCCe-eeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSN---TFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~---~~~~~~~~t~-~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
+.|+++|..++|||||+++|.+. .+.+++.+.. .+.....+..++ ..+.+||+||+++|.......+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 47999999999999999999953 3333333322 222223344444 78999999999998777777889999999
Q ss_pred EEEECCC---hhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCcccc
Q 030525 83 LAFSLIS---KASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDK 126 (175)
Q Consensus 83 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~ 126 (175)
+|+|+++ +++.+.+ . + +.. .++| +++|+||+|+.+.+
T Consensus 79 LVVDa~~G~~~qT~ehl-~-i---l~~--lgi~~iIVVlNK~Dlv~~~ 119 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHL-A-V---LDL--LGIPHTIVVITKADRVNEE 119 (581)
T ss_pred EEEECCCCCcHHHHHHH-H-H---HHH--cCCCeEEEEEECCCCCCHH
Confidence 9999998 4555554 2 2 222 2577 99999999997654
No 197
>PRK10218 GTP-binding protein; Provisional
Probab=99.63 E-value=3.9e-15 Score=125.31 Aligned_cols=119 Identities=14% Similarity=0.129 Sum_probs=85.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhc--CCCCCCCC------------CCeeee-eEEEEEECCeEEEEEEEeCCCccccc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTS--NTFPTDYV------------PTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYN 68 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~--~~~~~~~~------------~t~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~ 68 (175)
+..-||+|+|..++|||||+++|+. +.+..... .+.+.. ..+...+....+++++|||||+.+|.
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~ 82 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG 82 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH
Confidence 3567999999999999999999996 44432211 111111 12233444556899999999999998
Q ss_pred ccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 69 ~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
.....+++.+|++++|+|+++....+. +.++..+.. .++|.++++||+|+.+.+
T Consensus 83 ~~v~~~l~~aDg~ILVVDa~~G~~~qt--~~~l~~a~~--~gip~IVviNKiD~~~a~ 136 (607)
T PRK10218 83 GEVERVMSMVDSVLLVVDAFDGPMPQT--RFVTKKAFA--YGLKPIVVINKVDRPGAR 136 (607)
T ss_pred HHHHHHHHhCCEEEEEEecccCccHHH--HHHHHHHHH--cCCCEEEEEECcCCCCCc
Confidence 888889999999999999987643333 233344433 378999999999987543
No 198
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.63 E-value=2.3e-15 Score=121.01 Aligned_cols=118 Identities=22% Similarity=0.219 Sum_probs=85.0
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCC-CCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccc----cc---cccccCc
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR----LR---PLSYRGA 78 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~----~~---~~~~~~~ 78 (175)
..|.++|.||||||||+|++.+.+. ..++..|+.......+...+ ...+.++|+||..+-.. +. ...+.++
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 4799999999999999999997654 33445555444444444432 34689999999743111 11 1347889
Q ss_pred cEEEEEEECC---ChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCcccc
Q 030525 79 DVFILAFSLI---SKASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 79 d~vi~v~d~~---~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~ 126 (175)
|++++|+|++ +...++.. ..|+.++..+. .+.|+++|+||+|+.+..
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~-~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~ 291 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENA-RIIINELEKYSPKLAEKPRWLVFNKIDLLDEE 291 (390)
T ss_pred CEEEEEeccCcccccChHHHH-HHHHHHHHhhhhhhcCCCEEEEEeCCccCChH
Confidence 9999999998 45667776 77888877654 368999999999997543
No 199
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.63 E-value=2e-15 Score=123.13 Aligned_cols=121 Identities=12% Similarity=0.092 Sum_probs=79.2
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHhhcCC--CCCC------------------------------CCCCeeeeeEEEEE
Q 030525 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNT--FPTD------------------------------YVPTVFDNFSANVV 48 (175)
Q Consensus 1 m~~~~~~ki~v~G~~~~GKTsli~~l~~~~--~~~~------------------------------~~~t~~~~~~~~~~ 48 (175)
|++...++|+++|..++|||||+++|+... .... ...++.+... ..
T Consensus 1 ~~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~--~~ 78 (425)
T PRK12317 1 AKEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAH--KK 78 (425)
T ss_pred CCCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeee--EE
Confidence 788899999999999999999999998321 1100 0111111111 12
Q ss_pred ECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcc
Q 030525 49 VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (175)
Q Consensus 49 ~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 124 (175)
.....+.+.+|||||+++|.......++.+|++++|+|+++..........+...+... ...|+++++||+|+.+
T Consensus 79 ~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 79 FETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-GINQLIVAINKMDAVN 153 (425)
T ss_pred EecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-CCCeEEEEEEcccccc
Confidence 33345789999999998876644455789999999999987322222112223333332 2346999999999975
No 200
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=2.7e-16 Score=110.39 Aligned_cols=123 Identities=21% Similarity=0.332 Sum_probs=91.6
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHhhcC---CCC----CCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccc
Q 030525 1 MSASRFIKCVTVGDGAVGKTCMLISYTSN---TFP----TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPL 73 (175)
Q Consensus 1 m~~~~~~ki~v~G~~~~GKTsli~~l~~~---~~~----~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~ 73 (175)
|.....+.++|+|..++|||||+...-.. .+. ....+|. .....++.++ ...+.+||.+||+..+++|..
T Consensus 12 ~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tv-gLnig~i~v~--~~~l~fwdlgGQe~lrSlw~~ 88 (197)
T KOG0076|consen 12 MFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTV-GLNIGTIEVC--NAPLSFWDLGGQESLRSLWKK 88 (197)
T ss_pred HhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeeccc-ceeecceeec--cceeEEEEcCChHHHHHHHHH
Confidence 45567788999999999999999877643 111 1122222 2223344444 457899999999999999999
Q ss_pred cccCccEEEEEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCcccc
Q 030525 74 SYRGADVFILAFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 74 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~ 126 (175)
||..+|++|+++|.+|++.|+.....+-+.+.+- ..++|+++.+||.|+.+..
T Consensus 89 yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~ 142 (197)
T KOG0076|consen 89 YYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAM 142 (197)
T ss_pred HHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhh
Confidence 9999999999999999999988734444333332 2689999999999998753
No 201
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.62 E-value=9.2e-16 Score=109.17 Aligned_cols=100 Identities=20% Similarity=0.159 Sum_probs=66.7
Q ss_pred EEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccc----cccccccCccEEEE
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR----LRPLSYRGADVFIL 83 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~----~~~~~~~~~d~vi~ 83 (175)
+|+++|.+|+|||||+|++.+.. ... ..+ ..+..... .+|||||...... .....++.+|++++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~-~~~-~~~------~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~ 70 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNY-TLA-RKT------QAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIY 70 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC-ccC-ccc------eEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence 79999999999999999977542 111 111 11222222 2799999732211 11123689999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
|+|+++..++. ..|+..+ ..+.|+++++||+|+.+.
T Consensus 71 v~d~~~~~s~~---~~~~~~~---~~~~~ii~v~nK~Dl~~~ 106 (158)
T PRK15467 71 VHGANDPESRL---PAGLLDI---GVSKRQIAVISKTDMPDA 106 (158)
T ss_pred EEeCCCccccc---CHHHHhc---cCCCCeEEEEEccccCcc
Confidence 99999887763 2344443 236799999999999653
No 202
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.62 E-value=2.7e-15 Score=110.48 Aligned_cols=113 Identities=16% Similarity=0.180 Sum_probs=71.1
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeee-eeEEE-EEE-CCeEEEEEEEeCCCcccccccccc-----cccC
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSAN-VVV-DGSTVNLGLWDTAGQEDYNRLRPL-----SYRG 77 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~-~~~~~-~~~-~~~~~~~~~~D~~G~~~~~~~~~~-----~~~~ 77 (175)
++||+++|.+|+|||||+|.+.+.........+... ..... ..+ ......+.+||+||.......... .+.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 479999999999999999999986543322222111 00100 011 111346899999997543222222 2577
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcc
Q 030525 78 ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (175)
Q Consensus 78 ~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 124 (175)
+|+++++.+ .++......|++.+... +.|+++|+||+|+..
T Consensus 81 ~d~~l~v~~----~~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~ 121 (197)
T cd04104 81 YDFFIIISS----TRFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDL 121 (197)
T ss_pred cCEEEEEeC----CCCCHHHHHHHHHHHHh--CCCEEEEEecccchh
Confidence 898888743 23444435677777764 679999999999843
No 203
>COG1159 Era GTPase [General function prediction only]
Probab=99.61 E-value=2.6e-15 Score=114.34 Aligned_cols=137 Identities=18% Similarity=0.219 Sum_probs=92.3
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHhhcCCCC--CCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccc--------cc
Q 030525 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR--------LR 71 (175)
Q Consensus 2 ~~~~~~ki~v~G~~~~GKTsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------~~ 71 (175)
...+.--|+|+|.||||||||+|++++.+.+ .+...|+......-++.+ ..++.++||||--+-+. ..
T Consensus 2 ~~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~--~~QiIfvDTPGih~pk~~l~~~m~~~a 79 (298)
T COG1159 2 MKFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD--NAQIIFVDTPGIHKPKHALGELMNKAA 79 (298)
T ss_pred CCceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC--CceEEEEeCCCCCCcchHHHHHHHHHH
Confidence 4456778999999999999999999998763 333344444444433333 57899999999532211 22
Q ss_pred cccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccchhhc----------cCCCCcccccc
Q 030525 72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFI----------DHPGAVPITTA 141 (175)
Q Consensus 72 ~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~----------~~~~~~~vs~~ 141 (175)
...++++|++++|.|.+++..-.. +..+..+.+ .+.|++++.||+|..+.+.... ......|+|+.
T Consensus 80 ~~sl~dvDlilfvvd~~~~~~~~d--~~il~~lk~--~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~ 155 (298)
T COG1159 80 RSALKDVDLILFVVDADEGWGPGD--EFILEQLKK--TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISAL 155 (298)
T ss_pred HHHhccCcEEEEEEeccccCCccH--HHHHHHHhh--cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeecc
Confidence 345789999999999987543332 345566665 4689999999999877665211 12244567766
Q ss_pred chh
Q 030525 142 QVD 144 (175)
Q Consensus 142 ~~~ 144 (175)
.+.
T Consensus 156 ~g~ 158 (298)
T COG1159 156 KGD 158 (298)
T ss_pred ccC
Confidence 654
No 204
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.60 E-value=3.6e-18 Score=121.10 Aligned_cols=120 Identities=30% Similarity=0.530 Sum_probs=101.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEE-E-ECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANV-V-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~-~-~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
..+|++|+|+.|+|||+++.|++...|...+..+++.++...+ . .+..-+++++||..||++|..+...|++.+++..
T Consensus 24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~ 103 (229)
T KOG4423|consen 24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAF 103 (229)
T ss_pred hhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceE
Confidence 4679999999999999999999999888888888866654322 2 2334567899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC-----CCCcEEEEEeCCCCccc
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLDLRDD 125 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~ 125 (175)
+|+|+++..+|+.. ..|...+.... ..+|+++..||||..+.
T Consensus 104 iVfdvt~s~tfe~~-skwkqdldsk~qLpng~Pv~~vllankCd~e~~ 150 (229)
T KOG4423|consen 104 IVFDVTRSLTFEPV-SKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKS 150 (229)
T ss_pred EEEEccccccccHH-HHHHHhccCcccCCCCCcchheeccchhccChH
Confidence 99999999999998 88988876543 35889999999998754
No 205
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.60 E-value=3.3e-14 Score=107.28 Aligned_cols=82 Identities=20% Similarity=0.218 Sum_probs=59.6
Q ss_pred EEEEECCCCCCHHHHHHHhhcCCC-CCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccc-------cccccccCcc
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-------LRPLSYRGAD 79 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-------~~~~~~~~~d 79 (175)
+|+++|++|||||||++++.+... ..++..++.+.....+..++ ..+++||+||..+... ....+++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 789999999999999999997653 33444454444444444554 5799999999754321 1224688999
Q ss_pred EEEEEEECCChh
Q 030525 80 VFILAFSLISKA 91 (175)
Q Consensus 80 ~vi~v~d~~~~~ 91 (175)
++++|+|++++.
T Consensus 80 ~il~V~D~t~~~ 91 (233)
T cd01896 80 LILMVLDATKPE 91 (233)
T ss_pred EEEEEecCCcch
Confidence 999999998765
No 206
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.60 E-value=2.4e-14 Score=96.57 Aligned_cols=105 Identities=23% Similarity=0.263 Sum_probs=70.3
Q ss_pred EEEEECCCCCCHHHHHHHhhcCCC--CCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccc---------ccccccc
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR---------LRPLSYR 76 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~---------~~~~~~~ 76 (175)
+|+++|.+|+|||||+|++++... .....+++.......+..++.. +.++||||-..-.. .....+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 689999999999999999997533 2333344433333445566644 57999999643111 1223358
Q ss_pred CccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 030525 77 GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119 (175)
Q Consensus 77 ~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK 119 (175)
.+|++++|+|.+++.. +.. ..+++.++ .+.|+++|.||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~-~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDD-KNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHH-HHHHHHHH---TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHH-HHHHHHHh---cCCCEEEEEcC
Confidence 8999999999877422 222 44555553 48999999998
No 207
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.59 E-value=1.6e-14 Score=115.81 Aligned_cols=116 Identities=24% Similarity=0.323 Sum_probs=88.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCC--CCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccc--------ccc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR--------PLS 74 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~--------~~~ 74 (175)
.-+|++++|.||||||||+|.|++.. ...+...|+.+.....+.++| +.+++.||+|..+-.... ...
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence 35799999999999999999999764 466777888888888888887 679999999975433321 235
Q ss_pred ccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 75 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
++.||.+++|+|.+.+.+-... ..+. ...++.|+++|.||.||..+..
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d~--~~~~---~~~~~~~~i~v~NK~DL~~~~~ 341 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKEDL--ALIE---LLPKKKPIIVVLNKADLVSKIE 341 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhhH--HHHH---hcccCCCEEEEEechhcccccc
Confidence 7899999999999986333322 1222 2225799999999999987654
No 208
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.59 E-value=7.2e-15 Score=107.35 Aligned_cols=116 Identities=24% Similarity=0.274 Sum_probs=79.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCCC-------------------CCCeeeeeEEEEEECCeEEEEEEEeCCCcc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDY-------------------VPTVFDNFSANVVVDGSTVNLGLWDTAGQE 65 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~-------------------~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~ 65 (175)
+..+|+++|..++|||||+.+|+........ ...+..........+.....+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 5689999999999999999999953321110 000011111122212445789999999999
Q ss_pred cccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcc
Q 030525 66 DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (175)
Q Consensus 66 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 124 (175)
+|.......++.+|++|+|+|+.+...... ...+..+.. .++|+++|.||+|+..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~--~~~l~~~~~--~~~p~ivvlNK~D~~~ 136 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQT--EEHLKILRE--LGIPIIVVLNKMDLIE 136 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHH--HHHHHHHHH--TT-SEEEEEETCTSSH
T ss_pred ceeecccceecccccceeeeeccccccccc--ccccccccc--cccceEEeeeeccchh
Confidence 887777777899999999999987644433 234444444 3789999999999974
No 209
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.58 E-value=6.9e-15 Score=120.00 Aligned_cols=119 Identities=13% Similarity=0.066 Sum_probs=77.6
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhc--CCCCCC------------------------------CCCCeeeeeEEEEEEC
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTS--NTFPTD------------------------------YVPTVFDNFSANVVVD 50 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~--~~~~~~------------------------------~~~t~~~~~~~~~~~~ 50 (175)
+...++|+++|..++|||||+.+|+. +..... ....+.+... ....
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~--~~~~ 81 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAH--WKFE 81 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEE--EEEc
Confidence 35688999999999999999999985 222110 0011111111 2233
Q ss_pred CeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCcc
Q 030525 51 GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV-AKKWIPELRHYAPGVPIILVGTKLDLRD 124 (175)
Q Consensus 51 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 124 (175)
.....+.+||+||+++|.......+..+|++++|+|+++.+++... ...+...... ....|+++|+||+|+.+
T Consensus 82 ~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~-~~~~~iIVviNK~Dl~~ 155 (426)
T TIGR00483 82 TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLART-LGINQLIVAINKMDSVN 155 (426)
T ss_pred cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHH-cCCCeEEEEEEChhccC
Confidence 3457899999999988866555567899999999999988543211 0111222222 23457999999999964
No 210
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.58 E-value=3e-14 Score=122.95 Aligned_cols=113 Identities=15% Similarity=0.170 Sum_probs=78.8
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCC-CCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccc----------ccc
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR----------PLS 74 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~----------~~~ 74 (175)
.++|+++|++|||||||+|++.+... ..++..++.+..... .+....++++||+||..++.... ..+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~--~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQ--FSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEE--EEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 57899999999999999999987644 233333443333333 33445679999999987765321 123
Q ss_pred c--cCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 75 Y--RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 75 ~--~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
+ .++|++++|+|.++.++. .+|..++.+ .+.|+++|+||+|+.+.+
T Consensus 81 l~~~~aD~vI~VvDat~ler~----l~l~~ql~e--~giPvIvVlNK~Dl~~~~ 128 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERN----LYLTLQLLE--LGIPCIVALNMLDIAEKQ 128 (772)
T ss_pred HhccCCCEEEEEecCCcchhh----HHHHHHHHH--cCCCEEEEEEchhhhhcc
Confidence 2 489999999999876542 234445544 379999999999987543
No 211
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.58 E-value=8.6e-15 Score=112.61 Aligned_cols=114 Identities=23% Similarity=0.256 Sum_probs=76.8
Q ss_pred EEEEECCCCCCHHHHHHHhhcCCCCCCCC-----CCe-ee----------ee-EEEEEECCeEEEEEEEeCCCccccccc
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYV-----PTV-FD----------NF-SANVVVDGSTVNLGLWDTAGQEDYNRL 70 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~~~~~~~-----~t~-~~----------~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~ 70 (175)
+|+++|.+|+|||||+++++......... .++ .+ .. ..........+.+++|||||..+|...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 58999999999999999998432111100 000 00 00 011112223467899999999887766
Q ss_pred ccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 71 RPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 71 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
....++.+|++++|+|.++....... ..|. .+.. .++|.++++||+|+...
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~~-~~~~--~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTE-KLWE-FADE--AGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHH-HHHH-HHHH--cCCCEEEEEECCccCCC
Confidence 67789999999999999987655443 3343 3333 37899999999998754
No 212
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.58 E-value=1.1e-14 Score=122.57 Aligned_cols=116 Identities=15% Similarity=0.122 Sum_probs=82.2
Q ss_pred eEEEEECCCCCCHHHHHHHhhc--CCCCCCCCCC------------eee-eeEEEEEECCeEEEEEEEeCCCcccccccc
Q 030525 7 IKCVTVGDGAVGKTCMLISYTS--NTFPTDYVPT------------VFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLR 71 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~--~~~~~~~~~t------------~~~-~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~ 71 (175)
-||+|+|..++|||||+.+|+. +.+....... .+. ...+...+....+++++|||||+.+|....
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 3899999999999999999995 3332211000 001 111222233345789999999999998888
Q ss_pred cccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 72 ~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
..+++.+|++++|+|+++... ... +.|+..+.. .++|+++|+||+|+.+.+
T Consensus 82 ~~~l~~aD~alLVVDa~~G~~-~qT-~~~l~~a~~--~~ip~IVviNKiD~~~a~ 132 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGPM-PQT-RFVLKKALE--LGLKPIVVINKIDRPSAR 132 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCCc-HHH-HHHHHHHHH--CCCCEEEEEECCCCCCcC
Confidence 889999999999999987532 222 456666655 378999999999997543
No 213
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.57 E-value=2.5e-14 Score=120.41 Aligned_cols=113 Identities=22% Similarity=0.256 Sum_probs=77.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCC----eeeeeEEEEE---ECCeE-----E-----EEEEEeCCCccc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPT----VFDNFSANVV---VDGST-----V-----NLGLWDTAGQED 66 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t----~~~~~~~~~~---~~~~~-----~-----~~~~~D~~G~~~ 66 (175)
.++..|+++|..++|||||++++.+.......... .+..+..... ..+.. . .+.+|||||+++
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 45567999999999999999999865443322221 1111100000 00111 1 268999999999
Q ss_pred ccccccccccCccEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCc
Q 030525 67 YNRLRPLSYRGADVFILAFSLIS---KASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 123 (175)
Q Consensus 67 ~~~~~~~~~~~~d~vi~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 123 (175)
|..++...++.+|++++|+|+++ +++++.+ .. +.. .++|+++++||+|+.
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i-~~----~~~--~~vpiIvviNK~D~~ 136 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAI-NI----LKR--RKTPFVVAANKIDRI 136 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH-HH----HHH--cCCCEEEEEECcCCc
Confidence 98888788899999999999997 5666655 32 222 378999999999985
No 214
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.57 E-value=1.4e-14 Score=107.47 Aligned_cols=112 Identities=18% Similarity=0.119 Sum_probs=70.6
Q ss_pred EEEEECCCCCCHHHHHHHhhcCCCCCC--C------------------------------CCCeeeeeEEEEEECCeEEE
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNTFPTD--Y------------------------------VPTVFDNFSANVVVDGSTVN 55 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~~~~~--~------------------------------~~t~~~~~~~~~~~~~~~~~ 55 (175)
||+++|.+|+|||||+++|+...-.-. . ...+.+.....+.. ...+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~--~~~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST--PKRK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec--CCce
Confidence 689999999999999999984321100 0 01111111112222 3457
Q ss_pred EEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcc
Q 030525 56 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (175)
Q Consensus 56 ~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 124 (175)
+.+|||||+++|.......++.+|++++|+|++++..-.. ......+... ...++++|+||+|+.+
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~--~~~~~~~~~~-~~~~iIvviNK~D~~~ 144 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT--RRHSYILSLL-GIRHVVVAVNKMDLVD 144 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH--HHHHHHHHHc-CCCcEEEEEEchhccc
Confidence 8899999998876555566889999999999987632222 1222222222 2245788999999864
No 215
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.57 E-value=1.9e-14 Score=121.27 Aligned_cols=106 Identities=15% Similarity=0.205 Sum_probs=73.8
Q ss_pred CCCCCCHHHHHHHhhcCCCC-CCCCCCeeeeeEEEEEECCeEEEEEEEeCCCccccccc------ccccc--cCccEEEE
Q 030525 13 GDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL------RPLSY--RGADVFIL 83 (175)
Q Consensus 13 G~~~~GKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~------~~~~~--~~~d~vi~ 83 (175)
|++|||||||+|++.+.... .++..++.+.....+..++ .++++|||||+.++... ...++ .++|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 89999999999999987653 3334444444445555555 45899999999876553 22333 47999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
|+|.++.+.. ..+..++.+ .+.|+++|+||+|+.+.+
T Consensus 79 VvDat~ler~----l~l~~ql~~--~~~PiIIVlNK~Dl~~~~ 115 (591)
T TIGR00437 79 VVDASNLERN----LYLTLQLLE--LGIPMILALNLVDEAEKK 115 (591)
T ss_pred EecCCcchhh----HHHHHHHHh--cCCCEEEEEehhHHHHhC
Confidence 9999875422 233333333 379999999999997544
No 216
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.56 E-value=3.4e-14 Score=109.32 Aligned_cols=112 Identities=15% Similarity=0.116 Sum_probs=75.4
Q ss_pred EEEEECCCCCCHHHHHHHhhcCCCCCC-------------CCC------CeeeeeEEEEEECCeEEEEEEEeCCCccccc
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNTFPTD-------------YVP------TVFDNFSANVVVDGSTVNLGLWDTAGQEDYN 68 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~~~~~-------------~~~------t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 68 (175)
||+++|.+++|||||+++++...-... +.+ .+.......+.. ...++.+|||||+.++.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~--~~~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW--KDHRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE--CCEEEEEEECCCcHHHH
Confidence 689999999999999999973211000 000 000111112222 34678999999998887
Q ss_pred ccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 69 ~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
......++.+|++++|.|..+...-.. ..+...+.. .+.|++++.||+|+.+.
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~t--~~~~~~~~~--~~~p~ivviNK~D~~~a 131 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQT--ETVWRQADR--YNVPRIAFVNKMDRTGA 131 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEECCCCCCC
Confidence 777788999999999999987543332 233344443 36899999999998753
No 217
>PRK13351 elongation factor G; Reviewed
Probab=99.56 E-value=7.8e-15 Score=126.03 Aligned_cols=116 Identities=20% Similarity=0.190 Sum_probs=83.2
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcCCCC-------------CCC-------CCCeeeeeEEEEEECCeEEEEEEEeCC
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFP-------------TDY-------VPTVFDNFSANVVVDGSTVNLGLWDTA 62 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~~~~-------------~~~-------~~t~~~~~~~~~~~~~~~~~~~~~D~~ 62 (175)
.+...||+|+|..++|||||+++|+...-. .++ ..|... ...........+++||||
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~---~~~~~~~~~~~i~liDtP 81 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIES---AATSCDWDNHRINLIDTP 81 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCccc---ceEEEEECCEEEEEEECC
Confidence 345679999999999999999999853210 000 011111 111222235789999999
Q ss_pred CcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 63 G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
|+.+|......+++.+|++++|+|+++....... ..|. .+.. .++|+++|+||+|+...
T Consensus 82 G~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~~-~~~~--~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 82 GHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVWR-QADR--YGIPRLIFINKMDRVGA 140 (687)
T ss_pred CcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHH-HHHh--cCCCEEEEEECCCCCCC
Confidence 9998888778889999999999999988766654 4453 3433 37899999999998864
No 218
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.55 E-value=2.4e-14 Score=110.18 Aligned_cols=120 Identities=21% Similarity=0.253 Sum_probs=86.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCC-CCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccc--ccccc---c---c
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY--NRLRP---L---S 74 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~--~~~~~---~---~ 74 (175)
+....|+|.|.||||||||++.+.+.+. ..+|..|+-..+..++..+ ...+|++||||.-+. ...+. + .
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~--~~R~QvIDTPGlLDRPl~ErN~IE~qAi~A 243 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERG--YLRIQVIDTPGLLDRPLEERNEIERQAILA 243 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecC--CceEEEecCCcccCCChHHhcHHHHHHHHH
Confidence 3566899999999999999999998766 5667777765555555443 467999999995221 11110 0 1
Q ss_pred cc-CccEEEEEEECCCh--hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 75 YR-GADVFILAFSLISK--ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 75 ~~-~~d~vi~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
++ =.++|++++|.+.. .+.+.. ..++.++..... .|+++|.||+|+.+...
T Consensus 244 L~hl~~~IlF~~D~Se~cgy~lE~Q-~~L~~eIk~~f~-~p~v~V~nK~D~~~~e~ 297 (346)
T COG1084 244 LRHLAGVILFLFDPSETCGYSLEEQ-ISLLEEIKELFK-APIVVVINKIDIADEEK 297 (346)
T ss_pred HHHhcCeEEEEEcCccccCCCHHHH-HHHHHHHHHhcC-CCeEEEEecccccchhH
Confidence 12 26688889998744 577776 677777877655 89999999999886544
No 219
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.55 E-value=2.7e-14 Score=105.60 Aligned_cols=66 Identities=18% Similarity=0.113 Sum_probs=48.3
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCCh----hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 54 ~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
..+.+|||||++++.......+..+|++++|+|++++ ++.+.+ ..| ... ...|+++|+||+|+.+.
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l-~~~----~~~-~~~~iiivvNK~Dl~~~ 152 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHL-AAL----EIM-GLKHIIIVQNKIDLVKE 152 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHH-HHH----HHc-CCCcEEEEEEchhccCH
Confidence 6789999999988876666677889999999999873 233332 222 221 23579999999999753
No 220
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.55 E-value=3.3e-14 Score=100.73 Aligned_cols=109 Identities=17% Similarity=0.195 Sum_probs=69.6
Q ss_pred EEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCccc----------cccccccccc
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED----------YNRLRPLSYR 76 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~----------~~~~~~~~~~ 76 (175)
.|+++|++|+|||||++.+.++.+.....++..... ......++ .+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 489999999999999999997665544444432222 22222332 799999999532 2223333443
Q ss_pred ---CccEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCcc
Q 030525 77 ---GADVFILAFSLISKASYENV-AKKWIPELRHYAPGVPIILVGTKLDLRD 124 (175)
Q Consensus 77 ---~~d~vi~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 124 (175)
..+++++++|.++..+.... ...|+. .. +.|+++|+||+|+..
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~---~~--~~~vi~v~nK~D~~~ 124 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLE---EL--GIPFLVVLTKADKLK 124 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHH---Hc--CCCEEEEEEchhcCC
Confidence 45788999998865322221 133433 22 589999999999854
No 221
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.54 E-value=4.3e-14 Score=117.61 Aligned_cols=117 Identities=15% Similarity=0.108 Sum_probs=79.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhc-CCCCCC--------C-CCCee----------eee-EEEEEECCeEEEEEEEeCC
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTS-NTFPTD--------Y-VPTVF----------DNF-SANVVVDGSTVNLGLWDTA 62 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~-~~~~~~--------~-~~t~~----------~~~-~~~~~~~~~~~~~~~~D~~ 62 (175)
++..+|+|+|.+++|||||+++++. ...... . ..+.. ... ......+...+.+++||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 4567999999999999999999863 111100 0 00111 111 1123344556889999999
Q ss_pred CcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcc
Q 030525 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (175)
Q Consensus 63 G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 124 (175)
|+.+|.......++.+|++|+|+|.++.. +...+.+...... .++|+++++||+|+..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv--~~~t~~l~~~~~~--~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGV--ETRTRKLMEVTRL--RDTPIFTFMNKLDRDI 146 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCC--CHHHHHHHHHHHh--cCCCEEEEEECccccC
Confidence 99988776667889999999999998752 2222344444443 4789999999999864
No 222
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.53 E-value=3.6e-14 Score=118.06 Aligned_cols=119 Identities=15% Similarity=0.167 Sum_probs=80.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhc--CCCC---------------CCCCCCe---eeeeE-EEEEECCeEEEEEEEeCC
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTS--NTFP---------------TDYVPTV---FDNFS-ANVVVDGSTVNLGLWDTA 62 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~--~~~~---------------~~~~~t~---~~~~~-~~~~~~~~~~~~~~~D~~ 62 (175)
++..+|+|+|..++|||||+++++. +... .++.+.. +.... .........+++++||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 4567999999999999999999973 2110 0000000 00111 112233345789999999
Q ss_pred CcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 63 G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
|+.+|......+++.+|++|+|+|+++...-. . +.++..... .++|+++++||+|+...+
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t-~~l~~~~~~--~~iPiiv~iNK~D~~~a~ 147 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-T-RKLMEVCRL--RDTPIFTFINKLDRDGRE 147 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCHH-H-HHHHHHHHh--cCCCEEEEEECCcccccC
Confidence 99998876667899999999999998764222 2 344444443 379999999999987543
No 223
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=1.9e-14 Score=100.48 Aligned_cols=117 Identities=19% Similarity=0.311 Sum_probs=90.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v 84 (175)
+.-|++++|-.|+|||||++.+-++... ...||... ......+. +.+|+.+|.+|+..-+..+..|+..+|++++.
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~-qhvPTlHP-TSE~l~Ig--~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l 94 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHP-TSEELSIG--GMTFTTFDLGGHLQARRVWKDYFPQVDAIVYL 94 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHcccccc-ccCCCcCC-ChHHheec--CceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence 4569999999999999999999987654 33454322 22223343 36899999999998888999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCccc
Q 030525 85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125 (175)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~ 125 (175)
+|+.|.+.|.+.....-..+.... .++|+++.+||+|.+..
T Consensus 95 vda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a 136 (193)
T KOG0077|consen 95 VDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYA 136 (193)
T ss_pred eehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCc
Confidence 999999999887444444443332 68999999999998754
No 224
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.52 E-value=3.1e-14 Score=108.58 Aligned_cols=125 Identities=16% Similarity=0.205 Sum_probs=85.0
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccc------------c
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR------------L 70 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~------------~ 70 (175)
+.+.++|+|+|+||||||||.|.+++.+...-............-.+......+.++||||.-.-.. .
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~ 148 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN 148 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence 3578999999999999999999999988755433333333333333444557899999999422111 1
Q ss_pred ccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccchhhc
Q 030525 71 RPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFI 130 (175)
Q Consensus 71 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~ 130 (175)
-...+..||.+++++|+++....-+ ...+..+..+ .++|-++|.||.|...++.+..
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr~~l~--p~vl~~l~~y-s~ips~lvmnkid~~k~k~~Ll 205 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATRTPLH--PRVLHMLEEY-SKIPSILVMNKIDKLKQKRLLL 205 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCcCccC--hHHHHHHHHH-hcCCceeeccchhcchhhhHHh
Confidence 1234678999999999997332222 2344444443 4799999999999887766544
No 225
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.51 E-value=1.2e-13 Score=103.62 Aligned_cols=117 Identities=25% Similarity=0.377 Sum_probs=74.5
Q ss_pred EEEEECCCCCCHHHHHHHhhcCCCCCCCC--CCeeeeeEEEEEECCeEEEEEEEeCCCccccccc-----ccccccCccE
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYV--PTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-----RPLSYRGADV 80 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~-----~~~~~~~~d~ 80 (175)
||+++|+++|||||+.+.+..+-.+.++. ..+.+.....+.. .....+++||+||+..+-.. ....++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~-~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRF-LSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEEC-TTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEec-CCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 79999999999999988888754433322 1111111222222 33468999999999755332 3445899999
Q ss_pred EEEEEECCChhhH---HHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 81 FILAFSLISKASY---ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 81 vi~v~d~~~~~s~---~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
+|+|+|+.+.+-. ..+ ...+..+.+.++++.+-+..+|.|+..+.
T Consensus 80 LIyV~D~qs~~~~~~l~~~-~~~i~~l~~~sp~~~v~vfiHK~D~l~~~ 127 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYL-SDCIEALRQYSPNIKVFVFIHKMDLLSED 127 (232)
T ss_dssp EEEEEETT-STCHHHHHHH-HHHHHHHHHHSTT-EEEEEEE-CCCS-HH
T ss_pred EEEEEEcccccHHHHHHHH-HHHHHHHHHhCCCCeEEEEEeecccCCHH
Confidence 9999999854433 333 45556667778999999999999986543
No 226
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=2.4e-14 Score=97.87 Aligned_cols=118 Identities=18% Similarity=0.244 Sum_probs=93.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
++..+++++|-.|+|||++..++..++...+ .|+.+.... .+..+..++++||..|+-..+..|+.||.+.|++|+
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgevvtt-kPtigfnve---~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEVVTT-KPTIGFNVE---TVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCccccc-CCCCCcCcc---ccccccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 3778999999999999999999987776543 555533322 122366889999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCccc
Q 030525 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~ 125 (175)
|+|.+|..........++..+.+.. ....+++++||.|....
T Consensus 92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~ 134 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA 134 (182)
T ss_pred EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh
Confidence 9999999877766556666665433 56888999999998653
No 227
>COG2262 HflX GTPases [General function prediction only]
Probab=99.49 E-value=2.5e-13 Score=107.41 Aligned_cols=139 Identities=20% Similarity=0.231 Sum_probs=103.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCC-CCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcc---------cccccccc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNT-FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE---------DYNRLRPL 73 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~---------~~~~~~~~ 73 (175)
+....|.++|.+|+|||||+|++.+.. +..+..+++.+.....+...+ +..+-+-||.|-- .|++.. .
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTL-E 267 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTL-E 267 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHH-H
Confidence 456789999999999999999999654 457777888888777777765 4568899999942 233332 4
Q ss_pred cccCccEEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccch--hhc-c-CCCCccccccchhc
Q 030525 74 SYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ--FFI-D-HPGAVPITTAQVDY 145 (175)
Q Consensus 74 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~--~~~-~-~~~~~~vs~~~~~~ 145 (175)
....+|+++.|.|++++...+++ +...+.+.... .++|+|+|.||+|+..+.. ... . ....+++|+..+..
T Consensus 268 E~~~aDlllhVVDaSdp~~~~~~-~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~~~~~~~~~~~v~iSA~~~~g 343 (411)
T COG2262 268 EVKEADLLLHVVDASDPEILEKL-EAVEDVLAEIGADEIPIILVLNKIDLLEDEEILAELERGSPNPVFISAKTGEG 343 (411)
T ss_pred HhhcCCEEEEEeecCChhHHHHH-HHHHHHHHHcCCCCCCEEEEEecccccCchhhhhhhhhcCCCeEEEEeccCcC
Confidence 46789999999999999877777 77777777776 6799999999999664433 111 1 22457777777653
No 228
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.49 E-value=2.5e-13 Score=99.83 Aligned_cols=113 Identities=22% Similarity=0.228 Sum_probs=74.6
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCC--------C---CC------CCCCeeeeeEEEEEECCeEEEEEEEeCCCccccc
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTF--------P---TD------YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN 68 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~--------~---~~------~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 68 (175)
.++|+++|..++|||||+++|+.... . -+ ....+... ...........+.+.||||+.+|.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~--~~~~~~~~~~~i~~iDtPG~~~~~ 79 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINT--AHVEYETANRHYAHVDCPGHADYI 79 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEe--eeeEecCCCeEEEEEECcCHHHHH
Confidence 57999999999999999999985310 0 00 01111111 112233345678999999998776
Q ss_pred ccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCcc
Q 030525 69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRD 124 (175)
Q Consensus 69 ~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 124 (175)
......+..+|++++|+|++..-.-+. +..+..+... +.| ++++.||+|+..
T Consensus 80 ~~~~~~~~~~D~~ilVvda~~g~~~~~--~~~~~~~~~~--~~~~iIvviNK~D~~~ 132 (195)
T cd01884 80 KNMITGAAQMDGAILVVSATDGPMPQT--REHLLLARQV--GVPYIVVFLNKADMVD 132 (195)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCcEEEEEeCCCCCC
Confidence 655667889999999999986533222 2344444442 566 789999999864
No 229
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.49 E-value=1.9e-13 Score=117.50 Aligned_cols=116 Identities=16% Similarity=0.064 Sum_probs=80.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCC-----CC--------------CCCeeeeeEEEEEECCeEEEEEEEeCCCc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT-----DY--------------VPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~-----~~--------------~~t~~~~~~~~~~~~~~~~~~~~~D~~G~ 64 (175)
++..||+|+|..++|||||+++|+...-.. .. ...+.......+..+ ..++.+|||||+
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~--~~~i~liDTPG~ 85 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK--GHRINIIDTPGH 85 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC--CeEEEEEECCCC
Confidence 346699999999999999999997421100 00 011111111222233 468999999999
Q ss_pred ccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 65 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
.++.......++.+|++++|+|+++....+.. . ++..+.. .++|+++++||+|+.+.
T Consensus 86 ~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~-~~~~~~~--~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 86 VDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-T-VWRQANR--YEVPRIAFVNKMDKTGA 142 (689)
T ss_pred cchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-H-HHHHHHH--cCCCEEEEEECCCCCCC
Confidence 98877777789999999999999987555543 3 3334443 36899999999998754
No 230
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.47 E-value=7e-13 Score=106.25 Aligned_cols=115 Identities=25% Similarity=0.314 Sum_probs=89.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCC--CCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCccc----------ccccc-
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----------YNRLR- 71 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~----------~~~~~- 71 (175)
..+||+|+|-|+||||||+|++++..- ..+...|+.+.....+..++. ++.++||+|-.+ |...+
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~--~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGR--KYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCe--EEEEEECCCCCcccccccceEEEeehhh
Confidence 469999999999999999999997654 455567778888888877774 688999999432 22111
Q ss_pred cccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 72 ~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
...+..+|.+++|.|.+.+-+-+.. .....+.+ .+.++++|.||.|+.+.
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~--~ia~~i~~--~g~~~vIvvNKWDl~~~ 304 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDL--RIAGLIEE--AGRGIVIVVNKWDLVEE 304 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHH--HHHHHHHH--cCCCeEEEEEccccCCc
Confidence 2246789999999999988766654 56666666 37899999999998765
No 231
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.46 E-value=3.2e-13 Score=100.99 Aligned_cols=111 Identities=16% Similarity=0.090 Sum_probs=70.6
Q ss_pred EEEEECCCCCCHHHHHHHhhcCC--CCC------------------------CCC------CCeeeeeEEEEEECCeEEE
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNT--FPT------------------------DYV------PTVFDNFSANVVVDGSTVN 55 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~--~~~------------------------~~~------~t~~~~~~~~~~~~~~~~~ 55 (175)
+|+++|..++|||||+.+|+... ... +.. .++.+.....+ .....+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~--~~~~~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKF--ETEKYR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEE--eeCCeE
Confidence 58999999999999999997321 100 000 01111111222 224578
Q ss_pred EEEEeCCCcccccccccccccCccEEEEEEECCChh-------hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCc
Q 030525 56 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA-------SYENVAKKWIPELRHYAPGVPIILVGTKLDLR 123 (175)
Q Consensus 56 ~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~-------s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 123 (175)
+.+|||||+.+|.......++.+|++++|+|+++.. ..+.. +.| ...... ...|+++++||+|+.
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~-~~~-~~~~~~-~~~~iiivvNK~Dl~ 150 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTR-EHA-LLARTL-GVKQLIVAVNKMDDV 150 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchH-HHH-HHHHHc-CCCeEEEEEEccccc
Confidence 999999999877665555678899999999998742 11111 222 222222 236899999999997
No 232
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.45 E-value=3.4e-13 Score=116.28 Aligned_cols=117 Identities=17% Similarity=0.068 Sum_probs=79.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCC---------------CCCC---CCCCeeeee-EEEEEECCeEEEEEEEeCCCc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNT---------------FPTD---YVPTVFDNF-SANVVVDGSTVNLGLWDTAGQ 64 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~---------------~~~~---~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~ 64 (175)
....||+++|..++|||||+++|+... +.+. ...|..... ......++..+.+.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 346799999999999999999998421 1100 001111111 112234566789999999999
Q ss_pred ccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcc
Q 030525 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (175)
Q Consensus 65 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 124 (175)
.+|.......++.+|++++|+|+.+....+.. ..|.. +.+ .+.|.++++||+|...
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~-~~~~~-~~~--~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTE-TVLRQ-ALK--ENVKPVLFINKVDRLI 152 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccHH-HHHHH-HHH--cCCCEEEEEEChhccc
Confidence 99877777889999999999999875433332 33332 222 3678899999999863
No 233
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.45 E-value=7.4e-13 Score=89.66 Aligned_cols=90 Identities=24% Similarity=0.337 Sum_probs=69.3
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCCC-CCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYV-PTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~ 85 (175)
+|++++|+.|+|||+|+.|+....+...+. ++.. +......+.+.++.++++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~--------------------------~~~~~~~~~~s~~~~~~v~ 54 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG--------------------------IDVYDPTSYESFDVVLQCW 54 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh--------------------------hhhccccccCCCCEEEEEE
Confidence 589999999999999999998888765433 3322 2233345678899999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCccc
Q 030525 86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125 (175)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~ 125 (175)
+.++..+++.. |...+.... .++|.++++||.|+.++
T Consensus 55 ~~~~~~s~~~~---~~~~i~~~~k~dl~~~~~~nk~dl~~~ 92 (124)
T smart00010 55 RVDDRDSADNK---NVPEVLVGNKSDLPILVGGNRDVLEEE 92 (124)
T ss_pred EccCHHHHHHH---hHHHHHhcCCCCCcEEEEeechhhHhh
Confidence 99999998764 776665544 57899999999998543
No 234
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.44 E-value=2.8e-13 Score=109.96 Aligned_cols=116 Identities=16% Similarity=0.102 Sum_probs=74.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCC---CCC-CC-Ceeee-----------------eEEEEEECC------eEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP---TDY-VP-TVFDN-----------------FSANVVVDG------STVN 55 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~---~~~-~~-t~~~~-----------------~~~~~~~~~------~~~~ 55 (175)
+..++|+++|..++|||||+++|.+.... ++. .. |.... +......++ ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 56789999999999999999999642111 000 00 00000 000000011 1467
Q ss_pred EEEEeCCCcccccccccccccCccEEEEEEECCChh----hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 56 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA----SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 56 ~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~----s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
+.+||+||+++|..........+|++++|+|+++.. +.+.+ ..+... ...|+++|+||+|+.+.
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l-----~~l~~~-gi~~iIVvvNK~Dl~~~ 149 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHL-----MALEII-GIKNIVIVQNKIDLVSK 149 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHH-----HHHHHc-CCCeEEEEEEccccCCH
Confidence 999999999998776666677899999999998643 33333 222222 23478999999999754
No 235
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.43 E-value=1.1e-12 Score=111.16 Aligned_cols=109 Identities=23% Similarity=0.232 Sum_probs=72.7
Q ss_pred EEEEECCCCCCHHHHHHHhhc---CCCCCCC--CCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 8 KCVTVGDGAVGKTCMLISYTS---NTFPTDY--VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~---~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
-|.++|..++|||||+++|.+ +.+.++. ..|....+. .....+ ...+.+||+||+++|.......+.++|+++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~-~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~l 79 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYA-YWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHAL 79 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeE-EEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence 588999999999999999985 2333222 122222121 122212 245899999999988665556788999999
Q ss_pred EEEECCCh---hhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCccc
Q 030525 83 LAFSLISK---ASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDD 125 (175)
Q Consensus 83 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~ 125 (175)
+|+|+++. ++.+.+ ..+... ++| +++|+||+|+.++
T Consensus 80 LVVda~eg~~~qT~ehl-----~il~~l--gi~~iIVVlNKiDlv~~ 119 (614)
T PRK10512 80 LVVACDDGVMAQTREHL-----AILQLT--GNPMLTVALTKADRVDE 119 (614)
T ss_pred EEEECCCCCcHHHHHHH-----HHHHHc--CCCeEEEEEECCccCCH
Confidence 99999873 444443 223322 355 5799999999754
No 236
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.43 E-value=1e-12 Score=98.56 Aligned_cols=114 Identities=18% Similarity=0.214 Sum_probs=73.9
Q ss_pred EEEEECCCCCCHHHHHHHhhcCCCCCCCCCCee-----------------------eeeEEE--------------EEEC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-----------------------DNFSAN--------------VVVD 50 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~-----------------------~~~~~~--------------~~~~ 50 (175)
||+++|+.++|||||+.+|..+.+.+....... ...... ....
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 689999999999999999997666432111100 000000 0001
Q ss_pred CeEEEEEEEeCCCcccccccccccc--cCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 51 GSTVNLGLWDTAGQEDYNRLRPLSY--RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 51 ~~~~~~~~~D~~G~~~~~~~~~~~~--~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
.....+.+.|+||+++|.......+ ..+|++++|.|++....-.. ..++..+... ++|+++|.||+|+.++
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d--~~~l~~l~~~--~ip~ivvvNK~D~~~~ 153 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT--KEHLGLALAL--NIPVFVVVTKIDLAPA 153 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEECccccCH
Confidence 1235789999999988755433334 36899999999886543222 3455555543 6899999999998654
No 237
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.43 E-value=8.8e-13 Score=106.67 Aligned_cols=116 Identities=22% Similarity=0.201 Sum_probs=74.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCC-------CC-----C-----CCCCCeeeeeEEEEEECCeEEEEEEEeCCCccc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNT-------FP-----T-----DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~-------~~-----~-----~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 66 (175)
.+.++|+++|..++|||||+++|+... +. + .....+.+. ..+........+.+|||||+++
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~--~~~~~~~~~~~~~liDtpGh~~ 87 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINT--AHVEYETENRHYAHVDCPGHAD 87 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceee--EEEEEcCCCEEEEEEECCchHH
Confidence 468899999999999999999997320 00 0 001111111 1223344456789999999988
Q ss_pred ccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCccc
Q 030525 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPII-LVGTKLDLRDD 125 (175)
Q Consensus 67 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~ 125 (175)
|..........+|++++|+|+++....+.. ..+..+... ++|.+ +++||+|+.++
T Consensus 88 f~~~~~~~~~~~D~~ilVvda~~g~~~qt~--e~l~~~~~~--gi~~iIvvvNK~Dl~~~ 143 (394)
T TIGR00485 88 YVKNMITGAAQMDGAILVVSATDGPMPQTR--EHILLARQV--GVPYIVVFLNKCDMVDD 143 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCEEEEEEEecccCCH
Confidence 765444456778999999999874322222 222233332 56765 68999998754
No 238
>PRK12736 elongation factor Tu; Reviewed
Probab=99.42 E-value=1.2e-12 Score=105.95 Aligned_cols=116 Identities=22% Similarity=0.237 Sum_probs=75.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCC-----------C------CCCCeeeeeEEEEEECCeEEEEEEEeCCCccc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT-----------D------YVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~-----------~------~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 66 (175)
.+.++|+++|..++|||||+++|++..... + ....+.+. ...........+.++||||+++
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~--~~~~~~~~~~~i~~iDtPGh~~ 87 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINT--AHVEYETEKRHYAHVDCPGHAD 87 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEE--EeeEecCCCcEEEEEECCCHHH
Confidence 468899999999999999999998521100 0 01111111 1222333445789999999988
Q ss_pred ccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCccc
Q 030525 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDD 125 (175)
Q Consensus 67 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~ 125 (175)
|......-...+|++++|+|+++...-+. ...+..+... ++| ++++.||+|+.+.
T Consensus 88 f~~~~~~~~~~~d~~llVvd~~~g~~~~t--~~~~~~~~~~--g~~~~IvviNK~D~~~~ 143 (394)
T PRK12736 88 YVKNMITGAAQMDGAILVVAATDGPMPQT--REHILLARQV--GVPYLVVFLNKVDLVDD 143 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCchhH--HHHHHHHHHc--CCCEEEEEEEecCCcch
Confidence 76544455678999999999986432222 2233334432 677 6789999999743
No 239
>PRK12735 elongation factor Tu; Reviewed
Probab=99.41 E-value=1.8e-12 Score=104.90 Aligned_cols=115 Identities=21% Similarity=0.207 Sum_probs=74.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcC-------CCC-----CC-----CCCCeeeeeEEEEEECCeEEEEEEEeCCCccc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSN-------TFP-----TD-----YVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~-------~~~-----~~-----~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 66 (175)
...++|+++|..++|||||+++|+.. ++. +. ....+.+. ...........+.++||||+.+
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~--~~~~~~~~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINT--SHVEYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEE--eeeEEcCCCcEEEEEECCCHHH
Confidence 46789999999999999999999852 110 00 00111111 1122233345789999999987
Q ss_pred ccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCcc
Q 030525 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPII-LVGTKLDLRD 124 (175)
Q Consensus 67 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~ 124 (175)
|.......+..+|++++|+|+++...-+. ...+..+.. .++|.+ ++.||+|+.+
T Consensus 88 f~~~~~~~~~~aD~~llVvda~~g~~~qt--~e~l~~~~~--~gi~~iivvvNK~Dl~~ 142 (396)
T PRK12735 88 YVKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQ--VGVPYIVVFLNKCDMVD 142 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchhH--HHHHHHHHH--cCCCeEEEEEEecCCcc
Confidence 76555566778999999999987532222 233333443 257865 6799999974
No 240
>CHL00071 tufA elongation factor Tu
Probab=99.41 E-value=1.7e-12 Score=105.45 Aligned_cols=117 Identities=22% Similarity=0.207 Sum_probs=76.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCC--C--------------C-CCCeeeeeEEEEEECCeEEEEEEEeCCCccc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT--D--------------Y-VPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~--~--------------~-~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 66 (175)
...++|+++|..++|||||+++|+...-.. . . ...+.+. ...........+.+.||||+.+
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~--~~~~~~~~~~~~~~iDtPGh~~ 87 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINT--AHVEYETENRHYAHVDCPGHAD 87 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEc--cEEEEccCCeEEEEEECCChHH
Confidence 567999999999999999999999631110 0 0 0000111 1112223345788999999987
Q ss_pred ccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCcccc
Q 030525 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDK 126 (175)
Q Consensus 67 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~ 126 (175)
|.......+..+|++++|+|++....-+. ...+..+... ++| ++++.||+|+.+..
T Consensus 88 ~~~~~~~~~~~~D~~ilVvda~~g~~~qt--~~~~~~~~~~--g~~~iIvvvNK~D~~~~~ 144 (409)
T CHL00071 88 YVKNMITGAAQMDGAILVVSAADGPMPQT--KEHILLAKQV--GVPNIVVFLNKEDQVDDE 144 (409)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEEEccCCCCHH
Confidence 76555566789999999999986533222 2333444432 578 77899999997543
No 241
>PLN03126 Elongation factor Tu; Provisional
Probab=99.40 E-value=1.9e-12 Score=106.72 Aligned_cols=116 Identities=22% Similarity=0.202 Sum_probs=76.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCC------CCC-----------CCCCeeeeeEEEEEECCeEEEEEEEeCCCccc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTF------PTD-----------YVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~------~~~-----------~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 66 (175)
...++|+++|..++|||||+++|+.... ... ....+.+.. ..........+.++|+||+++
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~--~~~~~~~~~~i~liDtPGh~~ 156 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTA--TVEYETENRHYAHVDCPGHAD 156 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEE--EEEEecCCcEEEEEECCCHHH
Confidence 4688999999999999999999995211 100 000001111 111222345789999999988
Q ss_pred ccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCccc
Q 030525 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDD 125 (175)
Q Consensus 67 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~ 125 (175)
|-......+..+|++++|+|+++...-+. +.++..+... ++| ++++.||+|+.+.
T Consensus 157 f~~~~~~g~~~aD~ailVVda~~G~~~qt--~e~~~~~~~~--gi~~iIvvvNK~Dl~~~ 212 (478)
T PLN03126 157 YVKNMITGAAQMDGAILVVSGADGPMPQT--KEHILLAKQV--GVPNMVVFLNKQDQVDD 212 (478)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEecccccCH
Confidence 86655566788999999999986643333 2334444442 677 7889999999753
No 242
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.40 E-value=3e-12 Score=98.26 Aligned_cols=118 Identities=19% Similarity=0.251 Sum_probs=88.2
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCC-CCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccc----ccccccc---ccC
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY----NRLRPLS---YRG 77 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----~~~~~~~---~~~ 77 (175)
...+.++|-||+|||||++.+...+. ...|..|+......++.+++.. .+.+-|.||.-+= +.+-..| +.+
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIER 274 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHh
Confidence 44688999999999999999998765 5667888766655566665543 3999999995432 2222233 578
Q ss_pred ccEEEEEEECCCh---hhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCccc
Q 030525 78 ADVFILAFSLISK---ASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDD 125 (175)
Q Consensus 78 ~d~vi~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~ 125 (175)
++..++|.|++.. .-++.+ +.+..+++.+. .+.|.++|+||+|+++.
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~-~lL~~ELe~yek~L~~rp~liVaNKiD~~ea 327 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQL-QLLIEELELYEKGLADRPALIVANKIDLPEA 327 (366)
T ss_pred hceEEEEEECCCcccCCHHHHH-HHHHHHHHHHhhhhccCceEEEEeccCchhH
Confidence 9999999999988 777777 66666665543 57899999999999543
No 243
>PRK12739 elongation factor G; Reviewed
Probab=99.39 E-value=3e-12 Score=110.13 Aligned_cols=116 Identities=16% Similarity=0.091 Sum_probs=79.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcC--CCC-----CC------------CCCCeeeeeEEEEEECCeEEEEEEEeCCCc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFP-----TD------------YVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~--~~~-----~~------------~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~ 64 (175)
++..||+|+|..++|||||+++++.. ... .. ....+.+........+ ..++.++||||+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG~ 83 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--GHRINIIDTPGH 83 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC--CEEEEEEcCCCH
Confidence 46779999999999999999999742 110 00 0011111111222233 467899999999
Q ss_pred ccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 65 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
.+|.......++.+|++++|+|+.+...-+.. ..+..+.. .+.|++++.||+|+.+.
T Consensus 84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~--~i~~~~~~--~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE--TVWRQADK--YGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECCCCCCC
Confidence 88777677788999999999999876544332 33444443 36899999999999854
No 244
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.39 E-value=1.4e-12 Score=105.92 Aligned_cols=116 Identities=18% Similarity=0.132 Sum_probs=71.9
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcCCCCCCC-----C-CCeeee-----------------eEEEEEEC--C----eE
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDY-----V-PTVFDN-----------------FSANVVVD--G----ST 53 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~-----~-~t~~~~-----------------~~~~~~~~--~----~~ 53 (175)
.+..++|+++|..++|||||+.+|.+. +.+.. . -|.... +......+ + ..
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~-~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGV-WTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL 84 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCe-ecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence 457899999999999999999988542 11110 0 111100 00000001 1 13
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCCh----hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 54 ~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
..+.+|||||+++|..........+|++++|+|++++ ++.+.+ . .+... .-.|+++|+||+|+.++
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l-~----~l~~~-~i~~iiVVlNK~Dl~~~ 154 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHL-M----ALDII-GIKNIVIVQNKIDLVSK 154 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHH-H----HHHHc-CCCcEEEEEEeeccccc
Confidence 5799999999988765443445667999999999954 333333 2 22221 22478999999999764
No 245
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.38 E-value=5e-12 Score=96.14 Aligned_cols=119 Identities=16% Similarity=0.139 Sum_probs=72.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCC--CCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccc---c-------c
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR---L-------R 71 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~---~-------~ 71 (175)
...++|+++|.+|||||||+|++++..... ...+++..........++ .++.+|||||-.+... . .
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 457899999999999999999999875422 222333222222233344 5789999999754421 0 1
Q ss_pred ccccc--CccEEEEEEECCChhhHHHHHHHHHHHHhhcC-CC--CcEEEEEeCCCCccc
Q 030525 72 PLSYR--GADVFILAFSLISKASYENVAKKWIPELRHYA-PG--VPIILVGTKLDLRDD 125 (175)
Q Consensus 72 ~~~~~--~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~--~p~ilv~nK~Dl~~~ 125 (175)
..+++ ..|+++++..++.. .+.......++.+.... .+ .++++|.||+|...+
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~-r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMY-RRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCC-CCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 12332 57888888766543 12222134454554432 22 579999999997543
No 246
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.38 E-value=4.8e-13 Score=100.95 Aligned_cols=119 Identities=18% Similarity=0.216 Sum_probs=79.9
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcCCCCCCC-CCCeeeeeEE-EEEECCeEEEEEEEeCCCccc-------ccccccc
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDY-VPTVFDNFSA-NVVVDGSTVNLGLWDTAGQED-------YNRLRPL 73 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~-~~t~~~~~~~-~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~ 73 (175)
...+++++++|.+|+|||||||+++.+...+-. .+...+.... ...+++ -.+.+||+||-++ ++.....
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence 357899999999999999999999965443221 1211111111 112233 4689999999654 5555667
Q ss_pred cccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 74 SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 74 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
++..+|.++++.+..|+.---. ..++..+...+-+.+++++.|.+|...+
T Consensus 114 ~l~~~DLvL~l~~~~draL~~d--~~f~~dVi~~~~~~~~i~~VtQ~D~a~p 163 (296)
T COG3596 114 YLPKLDLVLWLIKADDRALGTD--EDFLRDVIILGLDKRVLFVVTQADRAEP 163 (296)
T ss_pred HhhhccEEEEeccCCCccccCC--HHHHHHHHHhccCceeEEEEehhhhhcc
Confidence 7899999999999987753322 2333334444446899999999997654
No 247
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.37 E-value=4.5e-12 Score=99.48 Aligned_cols=80 Identities=25% Similarity=0.232 Sum_probs=54.2
Q ss_pred EEEECCCCCCHHHHHHHhhcCCCC-CCCCCCeeeeeEEEEE---------------------ECC-eEEEEEEEeCCCc-
Q 030525 9 CVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVV---------------------VDG-STVNLGLWDTAGQ- 64 (175)
Q Consensus 9 i~v~G~~~~GKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~---------------------~~~-~~~~~~~~D~~G~- 64 (175)
|+++|.++||||||++++.+.... .++..++.+....... .++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999987642 2333333221111111 122 3467999999997
Q ss_pred ---cccccccccc---ccCccEEEEEEECC
Q 030525 65 ---EDYNRLRPLS---YRGADVFILAFSLI 88 (175)
Q Consensus 65 ---~~~~~~~~~~---~~~~d~vi~v~d~~ 88 (175)
++++.+...+ ++++|++++|+|++
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4444444444 89999999999997
No 248
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.37 E-value=6.3e-12 Score=97.51 Aligned_cols=118 Identities=14% Similarity=0.146 Sum_probs=71.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCC--CCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccc-------ccc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR-------PLS 74 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~-------~~~ 74 (175)
...++|+++|.+|+||||++|++++.... ....+............+ +.++.++||||..+..... ..+
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~--G~~l~VIDTPGL~d~~~~~e~~~~~ik~~ 113 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA--GFTLNIIDTPGLIEGGYINDQAVNIIKRF 113 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence 36789999999999999999999976532 222222111111222233 4689999999976432111 111
Q ss_pred c--cCccEEEEEEECCChhhHHHHHHHHHHHHhhcC-C--CCcEEEEEeCCCCcc
Q 030525 75 Y--RGADVFILAFSLISKASYENVAKKWIPELRHYA-P--GVPIILVGTKLDLRD 124 (175)
Q Consensus 75 ~--~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~--~~p~ilv~nK~Dl~~ 124 (175)
+ ...|++++|..++.. .+.......++.+.... + -.++|++.|+.|...
T Consensus 114 l~~~g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 114 LLGKTIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred hhcCCCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 1 268999999665532 12222133444444432 1 257999999999764
No 249
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.37 E-value=6e-12 Score=92.49 Aligned_cols=113 Identities=20% Similarity=0.152 Sum_probs=70.8
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCC---CCCeeeeeEEEEEECCeEEEEEEEeCCCccccccc-----------cc
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDY---VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-----------RP 72 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~-----------~~ 72 (175)
++|+++|.+|||||||+|.+++....... .+.+..........++ ..+.++||||-.+.... ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 48999999999999999999986542221 1222222222233343 57999999996543210 01
Q ss_pred ccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCC---CCcEEEEEeCCCCcc
Q 030525 73 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP---GVPIILVGTKLDLRD 124 (175)
Q Consensus 73 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~ 124 (175)
....++|++++|.++++ .+-+. ...++.+.+... -.++++|.|+.|...
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~d--~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~ 130 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEEE--EQAVETLQELFGEKVLDHTIVLFTRGDDLE 130 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHHH--HHHHHHHHHHhChHhHhcEEEEEECccccC
Confidence 12467899999999876 22222 344555544322 258899999998654
No 250
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.35 E-value=9e-12 Score=90.33 Aligned_cols=116 Identities=21% Similarity=0.186 Sum_probs=77.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeE-EEEEECCeEEEEEEEeCCCc----------cccccccc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQ----------EDYNRLRP 72 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~D~~G~----------~~~~~~~~ 72 (175)
+...-|+++|-+|||||||||++++.+--...+.|.+.... ....+++. +.+.|.||- +.+..+..
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~ 98 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIE 98 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHH
Confidence 34568999999999999999999997643333444433322 23444443 889999992 23333344
Q ss_pred cccc---CccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 73 LSYR---GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 73 ~~~~---~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
.|++ +..+++++.|...+-.-.. ...++.+.. .++|+++|+||+|.....
T Consensus 99 ~YL~~R~~L~~vvlliD~r~~~~~~D--~em~~~l~~--~~i~~~vv~tK~DKi~~~ 151 (200)
T COG0218 99 EYLEKRANLKGVVLLIDARHPPKDLD--REMIEFLLE--LGIPVIVVLTKADKLKKS 151 (200)
T ss_pred HHHhhchhheEEEEEEECCCCCcHHH--HHHHHHHHH--cCCCeEEEEEccccCChh
Confidence 4543 4678899999876644433 345555555 379999999999987653
No 251
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.34 E-value=8.7e-12 Score=98.11 Aligned_cols=75 Identities=16% Similarity=0.198 Sum_probs=58.5
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEECCCh----------hhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCC
Q 030525 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----------ASYENVAKKWIPELRHYA-PGVPIILVGTKLD 121 (175)
Q Consensus 53 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D 121 (175)
.+.+.+||++|+...+..|..++.+++++++|+|+++- ..+.+....|-..+.... .+.|++|++||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 46789999999999999999999999999999999873 345444344444444333 6899999999999
Q ss_pred Ccccch
Q 030525 122 LRDDKQ 127 (175)
Q Consensus 122 l~~~~~ 127 (175)
+..++-
T Consensus 240 ~f~~ki 245 (317)
T cd00066 240 LFEEKI 245 (317)
T ss_pred HHHHhh
Confidence 887654
No 252
>PRK00007 elongation factor G; Reviewed
Probab=99.33 E-value=1.4e-11 Score=105.99 Aligned_cols=116 Identities=16% Similarity=0.126 Sum_probs=78.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhc--CCCC-----C------------CCCCCeeeeeEEEEEECCeEEEEEEEeCCCc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTS--NTFP-----T------------DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~--~~~~-----~------------~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~ 64 (175)
++..||+|+|..++|||||+++|+. +... . .....+.+.....+... ...+.++||||+
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~--~~~~~liDTPG~ 85 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--DHRINIIDTPGH 85 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC--CeEEEEEeCCCc
Confidence 4567999999999999999999973 2110 0 00111111112222233 468999999999
Q ss_pred ccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 65 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
.+|.......++.+|++++|+|....-.-+.. ..|. .+.. .+.|++++.||+|+.+.
T Consensus 86 ~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~-~~~~-~~~~--~~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 86 VDFTIEVERSLRVLDGAVAVFDAVGGVEPQSE-TVWR-QADK--YKVPRIAFVNKMDRTGA 142 (693)
T ss_pred HHHHHHHHHHHHHcCEEEEEEECCCCcchhhH-HHHH-HHHH--cCCCEEEEEECCCCCCC
Confidence 87765555668899999999998876544443 3333 3443 36899999999998754
No 253
>PLN03127 Elongation factor Tu; Provisional
Probab=99.32 E-value=1.7e-11 Score=100.47 Aligned_cols=115 Identities=22% Similarity=0.209 Sum_probs=74.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcC------CCC----------CC-CCCCeeeeeEEEEEECCeEEEEEEEeCCCccc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSN------TFP----------TD-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~------~~~----------~~-~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 66 (175)
...++|+++|..++|||||+++|.+. ... ++ ....+.+. ...........+.+.||||+.+
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~--~~~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIAT--AHVEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeee--eEEEEcCCCeEEEEEECCCccc
Confidence 46789999999999999999999721 100 00 01111111 1222333345789999999987
Q ss_pred ccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCcc
Q 030525 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRD 124 (175)
Q Consensus 67 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 124 (175)
|-.....-...+|++++|.|.++...-+. +..+..+... ++| ++++.||+|+.+
T Consensus 137 f~~~~~~g~~~aD~allVVda~~g~~~qt--~e~l~~~~~~--gip~iIvviNKiDlv~ 191 (447)
T PLN03127 137 YVKNMITGAAQMDGGILVVSAPDGPMPQT--KEHILLARQV--GVPSLVVFLNKVDVVD 191 (447)
T ss_pred hHHHHHHHHhhCCEEEEEEECCCCCchhH--HHHHHHHHHc--CCCeEEEEEEeeccCC
Confidence 75544445667999999999976532222 2333344432 678 478999999975
No 254
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.32 E-value=1.1e-11 Score=102.24 Aligned_cols=118 Identities=18% Similarity=0.138 Sum_probs=72.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCC--CCCC----------CCCe---------e----------eeeE-EEEEECC
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTF--PTDY----------VPTV---------F----------DNFS-ANVVVDG 51 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~--~~~~----------~~t~---------~----------~~~~-~~~~~~~ 51 (175)
...+||+++|..++|||||+.+|+...- .... ..++ . .... .......
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 5679999999999999999999984321 1100 0000 0 0000 0111223
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcc
Q 030525 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (175)
Q Consensus 52 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 124 (175)
....+.++||||+++|.......+..+|++++|+|++....-... +.+. .+... ...|++++.||+|+.+
T Consensus 105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~-~~~~-l~~~l-g~~~iIvvvNKiD~~~ 174 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTR-RHSF-IATLL-GIKHLVVAVNKMDLVD 174 (474)
T ss_pred CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccch-HHHH-HHHHh-CCCceEEEEEeecccc
Confidence 345789999999988755444457899999999999765322111 1111 12221 1247899999999874
No 255
>PRK00049 elongation factor Tu; Reviewed
Probab=99.31 E-value=1.7e-11 Score=99.17 Aligned_cols=115 Identities=22% Similarity=0.209 Sum_probs=76.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCC---CC--------------CCCCeeeeeEEEEEECCeEEEEEEEeCCCccc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP---TD--------------YVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~---~~--------------~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 66 (175)
...++|+++|..++|||||+++|+..... .. ....+.+. ...........+.+.||||+.+
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~--~~~~~~~~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINT--AHVEYETEKRHYAHVDCPGHAD 87 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEee--eEEEEcCCCeEEEEEECCCHHH
Confidence 56889999999999999999999863110 00 01111111 1222333345788999999987
Q ss_pred ccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCcc
Q 030525 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPII-LVGTKLDLRD 124 (175)
Q Consensus 67 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~ 124 (175)
|.......+..+|++++|+|+++...-+. ..++..+... +.|.+ ++.||+|+.+
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g~~~qt--~~~~~~~~~~--g~p~iiVvvNK~D~~~ 142 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQV--GVPYIVVFLNKCDMVD 142 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchHH--HHHHHHHHHc--CCCEEEEEEeecCCcc
Confidence 76655566789999999999986533222 2344444443 57876 6899999974
No 256
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.30 E-value=1.1e-11 Score=100.52 Aligned_cols=115 Identities=20% Similarity=0.169 Sum_probs=71.1
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCC--CCCCC----------CCCe---------ee----------ee-EEEEEECCeEE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNT--FPTDY----------VPTV---------FD----------NF-SANVVVDGSTV 54 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~--~~~~~----------~~t~---------~~----------~~-~~~~~~~~~~~ 54 (175)
+||+++|..++|||||+.+++... ..... ..+. .+ .. ...........
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 589999999999999999998321 11100 0000 00 00 00111222345
Q ss_pred EEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcc
Q 030525 55 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (175)
Q Consensus 55 ~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 124 (175)
++.++||||+++|.......+..+|++++|+|++....-+.. +.|. .+... ...+++++.||+|+.+
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~-~~~~-~~~~~-~~~~iivviNK~D~~~ 147 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTR-RHSY-IASLL-GIRHVVLAVNKMDLVD 147 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccH-HHHH-HHHHc-CCCcEEEEEEeccccc
Confidence 789999999988865444568899999999999865332222 2222 22222 1346899999999864
No 257
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=7.6e-12 Score=91.06 Aligned_cols=116 Identities=16% Similarity=0.146 Sum_probs=79.1
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCccccccccccccc---CccEEE
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYR---GADVFI 82 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~---~~d~vi 82 (175)
.-.|+++|+.+||||+|+-+|..+.+.+...+...... .....+. ..+++|.||+.+.+.-...+++ .+-++|
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a--~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV 113 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEA--TYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV 113 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCccCeeeeecccee--eEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence 35799999999999999999999866544332222211 1222221 3899999999987776556666 789999
Q ss_pred EEEECCC-hhhHHHHHHHHHHHHhhc---CCCCcEEEEEeCCCCccc
Q 030525 83 LAFSLIS-KASYENVAKKWIPELRHY---APGVPIILVGTKLDLRDD 125 (175)
Q Consensus 83 ~v~d~~~-~~s~~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~~~ 125 (175)
||+|..- ..-.....+.+++.+... ...+|++++.||.|+.-.
T Consensus 114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA 160 (238)
T KOG0090|consen 114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA 160 (238)
T ss_pred EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence 9999752 222233335566655544 257999999999998643
No 258
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=2.4e-11 Score=97.97 Aligned_cols=119 Identities=25% Similarity=0.233 Sum_probs=82.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCC--CCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccc-c--------cc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-L--------RP 72 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-~--------~~ 72 (175)
+..++|+|+|.||||||||+|.|.+... ..+...|+.+.....+.++| +++.+.||+|-.+-.. . ..
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~ 343 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERAR 343 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHH
Confidence 3568999999999999999999998654 45556677787888888877 6789999999644111 1 12
Q ss_pred ccccCccEEEEEEEC--CChhhHHHHHHHHHHHHhhcC-------CCCcEEEEEeCCCCccc
Q 030525 73 LSYRGADVFILAFSL--ISKASYENVAKKWIPELRHYA-------PGVPIILVGTKLDLRDD 125 (175)
Q Consensus 73 ~~~~~~d~vi~v~d~--~~~~s~~~~~~~~~~~~~~~~-------~~~p~ilv~nK~Dl~~~ 125 (175)
.-+..+|++++|+|. ++-++-..+ ...+.....-. ...|++++.||.|+...
T Consensus 344 k~~~~advi~~vvda~~~~t~sd~~i-~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 344 KRIERADVILLVVDAEESDTESDLKI-ARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred HHHhhcCEEEEEecccccccccchHH-HHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 236789999999999 332322222 22332222111 24799999999998765
No 259
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.28 E-value=1.2e-11 Score=105.54 Aligned_cols=118 Identities=19% Similarity=0.137 Sum_probs=72.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCC--CCC----------CCCCeeeee--------------------EEEEEECC
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTF--PTD----------YVPTVFDNF--------------------SANVVVDG 51 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~--~~~----------~~~t~~~~~--------------------~~~~~~~~ 51 (175)
+..++|+++|.+++|||||+++++...- ... ...++.+.+ ........
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 4678999999999999999999995321 100 011100000 00111122
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcc
Q 030525 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (175)
Q Consensus 52 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 124 (175)
...++.++||||+++|.......+..+|++++|+|++....-+.. + ....+... ...|++++.||+|+.+
T Consensus 102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~-e-~~~~~~~~-~~~~iivvvNK~D~~~ 171 (632)
T PRK05506 102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTR-R-HSFIASLL-GIRHVVLAVNKMDLVD 171 (632)
T ss_pred CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCH-H-HHHHHHHh-CCCeEEEEEEeccccc
Confidence 335688999999987755444567899999999999765322221 1 11122222 2357899999999974
No 260
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.25 E-value=1e-11 Score=86.11 Aligned_cols=96 Identities=21% Similarity=0.205 Sum_probs=64.2
Q ss_pred EEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcc----cccccccccccCccEEEE
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE----DYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~----~~~~~~~~~~~~~d~vi~ 83 (175)
||+++|+.|+|||||+++|.+...... .|.. +... =.++||||.= .+.......-.+||.+++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~~--KTq~------i~~~-----~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~l 69 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRYK--KTQA------IEYY-----DNTIDTPGEYIENPRFYHALIVTAQDADVVLL 69 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCcC--ccce------eEec-----ccEEECChhheeCHHHHHHHHHHHhhCCEEEE
Confidence 799999999999999999998655322 2211 1111 1358999952 222222233468999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCc
Q 030525 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 123 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 123 (175)
+.|.+++.+.-.- .+...+ +.|+|=|.||+|+.
T Consensus 70 l~dat~~~~~~pP--~fa~~f-----~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 70 LQDATEPRSVFPP--GFASMF-----NKPVIGVITKIDLP 102 (143)
T ss_pred EecCCCCCccCCc--hhhccc-----CCCEEEEEECccCc
Confidence 9999987543221 122111 47999999999998
No 261
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.25 E-value=2.2e-11 Score=106.69 Aligned_cols=116 Identities=15% Similarity=0.145 Sum_probs=79.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCC--CCCCCCC-e-ee----------ee---EEEEEE--------------CCe
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPT-V-FD----------NF---SANVVV--------------DGS 52 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~--~~~~~~t-~-~~----------~~---~~~~~~--------------~~~ 52 (175)
.+..||+|+|..++|||||+.+++...- ....... . .+ .. ...... .+.
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 4567999999999999999999984321 1100000 0 00 00 001111 123
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCc
Q 030525 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 123 (175)
Q Consensus 53 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 123 (175)
.+.++++||||+.+|.......++.+|++|+|+|+.+.-..... ..|..... .+.|++++.||+|..
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~-~~~~~~~~---~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG---ERIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHH-HHHHHHHH---CCCCEEEEEECCccc
Confidence 57889999999999987777778999999999999877554443 44443333 378999999999987
No 262
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.25 E-value=5.9e-11 Score=99.27 Aligned_cols=117 Identities=15% Similarity=0.203 Sum_probs=83.6
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCC-CCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccc------cccccc--c
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNT-FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR------LRPLSY--R 76 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~~~~~--~ 76 (175)
..+|+++|+||||||||+|++.+.. ...++...+.+.........+. .+++.|.||.=.... ..+.|+ .
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~--~i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH--EIEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc--eEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 4569999999999999999999754 4677777777766666666554 499999999422211 223343 4
Q ss_pred CccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccchhhc
Q 030525 77 GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFI 130 (175)
Q Consensus 77 ~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~ 130 (175)
+.|++|-|.|.+|.+.--.+ -+ ++.+ -+.|++++.|++|..+.+.+..
T Consensus 81 ~~D~ivnVvDAtnLeRnLyl---tl-QLlE--~g~p~ilaLNm~D~A~~~Gi~I 128 (653)
T COG0370 81 KPDLIVNVVDATNLERNLYL---TL-QLLE--LGIPMILALNMIDEAKKRGIRI 128 (653)
T ss_pred CCCEEEEEcccchHHHHHHH---HH-HHHH--cCCCeEEEeccHhhHHhcCCcc
Confidence 57999999999987744333 22 2333 2789999999999987755444
No 263
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.24 E-value=4.5e-11 Score=94.90 Aligned_cols=75 Identities=16% Similarity=0.206 Sum_probs=57.8
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEECCCh----------hhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCC
Q 030525 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----------ASYENVAKKWIPELRHYA-PGVPIILVGTKLD 121 (175)
Q Consensus 53 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D 121 (175)
...+.+||.+|+...+..|..++.+++++++|.|+++- ..+......|-..+.... .+.|++|++||.|
T Consensus 183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D 262 (342)
T smart00275 183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID 262 (342)
T ss_pred CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence 35689999999999999999999999999999999963 345555344433343322 6899999999999
Q ss_pred Ccccch
Q 030525 122 LRDDKQ 127 (175)
Q Consensus 122 l~~~~~ 127 (175)
+..++-
T Consensus 263 ~~~~Kl 268 (342)
T smart00275 263 LFEEKI 268 (342)
T ss_pred hHHHHh
Confidence 986653
No 264
>PRK12740 elongation factor G; Reviewed
Probab=99.24 E-value=1.8e-11 Score=105.21 Aligned_cols=110 Identities=22% Similarity=0.242 Sum_probs=73.0
Q ss_pred ECCCCCCHHHHHHHhhcCCCC--C--CC-CC-Ceeee----------e-EEEEEECCeEEEEEEEeCCCccccccccccc
Q 030525 12 VGDGAVGKTCMLISYTSNTFP--T--DY-VP-TVFDN----------F-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLS 74 (175)
Q Consensus 12 ~G~~~~GKTsli~~l~~~~~~--~--~~-~~-t~~~~----------~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~ 74 (175)
+|..++|||||+++|+...-. . +. .. +..+. . ..........+.+.+|||||+.++.......
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 599999999999999742111 0 00 00 11110 0 0111122234789999999998876666778
Q ss_pred ccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 75 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
++.+|++++++|.++....... ..|. .+.. .+.|+++|+||+|+...
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~-~~~~-~~~~--~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTE-TVWR-QAEK--YGVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHH-HHHH-HHHH--cCCCEEEEEECCCCCCC
Confidence 8999999999999987665544 3343 3333 37899999999998754
No 265
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.23 E-value=6.5e-11 Score=97.09 Aligned_cols=116 Identities=16% Similarity=0.111 Sum_probs=75.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCC--CC------------------------CCCCCe---eeee-EEEEEECCeE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTF--PT------------------------DYVPTV---FDNF-SANVVVDGST 53 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~--~~------------------------~~~~t~---~~~~-~~~~~~~~~~ 53 (175)
...++|+++|..++|||||+.+|+...- .. +..+.. +... ..........
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 4678999999999999999998884211 00 000000 0000 0111233445
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHH-------HHHHHHHHHHhhcCCCC-cEEEEEeCCCCc
Q 030525 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYE-------NVAKKWIPELRHYAPGV-PIILVGTKLDLR 123 (175)
Q Consensus 54 ~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~-p~ilv~nK~Dl~ 123 (175)
..++++|+||+++|.......+..+|++|+|+|+++. .|+ ...+.|. .+.. .++ ++++++||+|+.
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~-~~~~--~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHAL-LAFT--LGVKQMICCCNKMDAT 158 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHH-HHHH--cCCCcEEEEEEcccCC
Confidence 7899999999999988777889999999999999863 221 2212222 2332 256 478899999986
No 266
>PTZ00416 elongation factor 2; Provisional
Probab=99.22 E-value=7.1e-11 Score=103.44 Aligned_cols=116 Identities=11% Similarity=0.138 Sum_probs=78.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCC--CCCCCCCCee--e----------ee---EEEEEEC--------CeEEEEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVF--D----------NF---SANVVVD--------GSTVNLGL 58 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~--~~~~~~~t~~--~----------~~---~~~~~~~--------~~~~~~~~ 58 (175)
++..||+++|..++|||||+++|+... .......++. + .. ....... +....+.+
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 456699999999999999999998521 1111000000 0 00 0011111 23577999
Q ss_pred EeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCc
Q 030525 59 WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 123 (175)
Q Consensus 59 ~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 123 (175)
+||||+.+|.......++.+|++|+|.|+.+.-..+.. ..| ..+.. .+.|++++.||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~-~~~~~--~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVL-RQALQ--ERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHH-HHHHH--cCCCEEEEEEChhhh
Confidence 99999998877667778999999999999876544433 334 34443 368999999999987
No 267
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.21 E-value=9.2e-11 Score=96.21 Aligned_cols=117 Identities=17% Similarity=0.117 Sum_probs=74.7
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcC--CCCC------------------------CCCCCe---eeee-EEEEEECCe
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSN--TFPT------------------------DYVPTV---FDNF-SANVVVDGS 52 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~--~~~~------------------------~~~~t~---~~~~-~~~~~~~~~ 52 (175)
....++|+++|..++|||||+.+|+.. .... +..+.+ +... .........
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 356889999999999999999999852 1110 000100 0000 011223344
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEECCChhh---H---HHHHHHHHHHHhhcCCCCc-EEEEEeCCCC
Q 030525 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS---Y---ENVAKKWIPELRHYAPGVP-IILVGTKLDL 122 (175)
Q Consensus 53 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 122 (175)
...+.++|+||+.+|.......+..+|++++|+|.++... + ....+.|. .+... ++| ++++.||+|.
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~-~~~~~--gi~~iiv~vNKmD~ 157 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHAL-LAFTL--GVKQMIVCINKMDD 157 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHH-HHHHc--CCCeEEEEEEcccc
Confidence 5789999999999987766667889999999999986521 1 11112333 23332 566 6799999994
No 268
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.21 E-value=3.9e-11 Score=93.09 Aligned_cols=117 Identities=22% Similarity=0.169 Sum_probs=84.7
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCC-CCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccc----ccccccc---ccCc
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY----NRLRPLS---YRGA 78 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----~~~~~~~---~~~~ 78 (175)
..|.++|-|++|||||++.+...+. ..+|..|+....-..+.. ...-.|.+-|.||.-+= ..+-..| +.++
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt 238 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT 238 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence 3578999999999999999997665 677888886665555555 33346899999995321 1222333 5688
Q ss_pred cEEEEEEECCChhh---HHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCccc
Q 030525 79 DVFILAFSLISKAS---YENVAKKWIPELRHYA---PGVPIILVGTKLDLRDD 125 (175)
Q Consensus 79 d~vi~v~d~~~~~s---~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~ 125 (175)
.++++|.|++..+- .+.. +.+..++..+. .+.|.+||+||+|+...
T Consensus 239 ~vL~hviD~s~~~~~dp~~~~-~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~ 290 (369)
T COG0536 239 RVLLHVIDLSPIDGRDPIEDY-QTIRNELEKYSPKLAEKPRIVVLNKIDLPLD 290 (369)
T ss_pred heeEEEEecCcccCCCHHHHH-HHHHHHHHHhhHHhccCceEEEEeccCCCcC
Confidence 99999999985542 4554 56666676664 47999999999995543
No 269
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.19 E-value=1.6e-11 Score=92.79 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=22.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcC
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
+++.-|+++|..|||||||++||...
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~h 42 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSH 42 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHH
Confidence 35678999999999999999999854
No 270
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.19 E-value=4.2e-10 Score=92.43 Aligned_cols=121 Identities=22% Similarity=0.335 Sum_probs=90.7
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEE-EEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v 81 (175)
..+.+++.++|+.++|||.+++.++++.+..++.++....+.. .+...+....+.+.|.+-. ....+.... ..+|++
T Consensus 422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~ 499 (625)
T KOG1707|consen 422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVA 499 (625)
T ss_pred cceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeE
Confidence 4568899999999999999999999999887666665444433 3444566666777777654 222222222 789999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 82 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
.++||.+++.+|+.. ...++..... ...|+++|++|+|+.+..+
T Consensus 500 ~~~YDsS~p~sf~~~-a~v~~~~~~~-~~~Pc~~va~K~dlDe~~Q 543 (625)
T KOG1707|consen 500 CLVYDSSNPRSFEYL-AEVYNKYFDL-YKIPCLMVATKADLDEVPQ 543 (625)
T ss_pred EEecccCCchHHHHH-HHHHHHhhhc-cCCceEEEeeccccchhhh
Confidence 999999999999988 6666555444 6899999999999987654
No 271
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.18 E-value=1.3e-10 Score=100.63 Aligned_cols=116 Identities=17% Similarity=0.126 Sum_probs=77.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCC--CCCCCC-Ce-eee-------------e--EEEEEECCeEEEEEEEeCCCc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVP-TV-FDN-------------F--SANVVVDGSTVNLGLWDTAGQ 64 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~--~~~~~~-t~-~~~-------------~--~~~~~~~~~~~~~~~~D~~G~ 64 (175)
++.-+|+++|..++|||||+.+++...- ...... +. .+. . ......++..+.+.++||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 4556899999999999999999984321 110000 00 000 0 001122445678999999999
Q ss_pred ccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCc
Q 030525 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 123 (175)
Q Consensus 65 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 123 (175)
.+|.......++.+|++++|+|+......+.. ..|...... +.|.+++.||+|+.
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t~-~~~~~~~~~---~~~~iv~iNK~D~~ 152 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTE-TVLRQALRE---RVKPVLFINKVDRL 152 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCccHH-HHHHHHHHc---CCCeEEEEECchhh
Confidence 99877777788999999999999876443333 344432222 56889999999976
No 272
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.17 E-value=5.4e-10 Score=86.46 Aligned_cols=117 Identities=16% Similarity=0.210 Sum_probs=69.0
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCCCCCC----------CCCe-eeeeEEEEEECCeEEEEEEEeCCCccccccc----
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDY----------VPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRL---- 70 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~~~~~----------~~t~-~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~---- 70 (175)
.++|+|+|.+|+|||||+|.|++....... ..+. .......+.-++..+.+.++||||-.+.-..
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 689999999999999999999976543221 1111 1122234445788899999999992211000
Q ss_pred ---------------------ccccc--cCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 71 ---------------------RPLSY--RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 71 ---------------------~~~~~--~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
.+... .+.|++++..+.+.. ....+.-..++.+. +.+++|-|..|+|.-...
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~Di~~mk~Ls---~~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLDIEFMKRLS---KRVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHHHHHHHHHT---TTSEEEEEESTGGGS-HH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHHHHHHHHhc---ccccEEeEEecccccCHH
Confidence 00111 368899999987643 22222123444444 579999999999976543
No 273
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.16 E-value=1.2e-11 Score=100.69 Aligned_cols=155 Identities=26% Similarity=0.385 Sum_probs=112.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v 84 (175)
..+|+.|+|+.++|||+|++||+.+.|.... .+.+..+.+.+.+++....+.+.|-+|... ..|..+.|++|+|
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e-~~e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIfv 102 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDE-SPEGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVFV 102 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceecccc-CCcCccceeeEEeeccceEeeeecccCCch-----hhhhhhccceEEE
Confidence 4679999999999999999999999998764 445778888889999999999999998544 4678899999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCcccchhhccCCCCccccccchhccCcccHHH-HhhhHh-h
Q 030525 85 FSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQVDYKHPVCVYY-FALLFF-F 160 (175)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~vs~~~~~~~~~~~~~~-~~~~~~-~ 160 (175)
+.+.+..+|+.+ +.+...+..+. ..+|+++++++.-....+...+.+.+.+..+ .....|.|| ....|. .
T Consensus 103 f~~~d~~s~q~v-~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~-----~~~krcsy~et~atyGln 176 (749)
T KOG0705|consen 103 FSVEDEQSFQAV-QALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLS-----AQMKRCSYYETCATYGLN 176 (749)
T ss_pred EEeccccCHHHH-HHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHH-----HhcCccceeecchhhhhh
Confidence 999999999998 55555554332 5799999999876554443222221111111 225567766 333333 6
Q ss_pred hhhHHHhhccc
Q 030525 161 FPKTFQLFGLK 171 (175)
Q Consensus 161 ~~~~~~~~~~~ 171 (175)
....||.+..+
T Consensus 177 v~rvf~~~~~k 187 (749)
T KOG0705|consen 177 VERVFQEVAQK 187 (749)
T ss_pred HHHHHHHHHHH
Confidence 67777765443
No 274
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.16 E-value=1.7e-10 Score=82.41 Aligned_cols=62 Identities=21% Similarity=0.134 Sum_probs=45.0
Q ss_pred EEEEeCCCccc----ccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 030525 56 LGLWDTAGQED----YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120 (175)
Q Consensus 56 ~~~~D~~G~~~----~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 120 (175)
+.|+|+||... .......++..+|++++|.+.++..+-... ..+.+..... ...+++|.||+
T Consensus 103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~-~~l~~~~~~~--~~~~i~V~nk~ 168 (168)
T PF00350_consen 103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDM-EFLKQMLDPD--KSRTIFVLNKA 168 (168)
T ss_dssp EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHH-HHHHHHHTTT--CSSEEEEEE-G
T ss_pred eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHH-HHHHHHhcCC--CCeEEEEEcCC
Confidence 78999999643 234556778999999999999986665555 6666666654 34489999984
No 275
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.12 E-value=8.7e-11 Score=93.43 Aligned_cols=113 Identities=19% Similarity=0.276 Sum_probs=59.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCC-CCCC--eeeeeEEEEEECCeEEEEEEEeCCCcccccccc-----cccc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPT--VFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR-----PLSY 75 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~-~~~t--~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~-----~~~~ 75 (175)
+..++|+|+|++|+|||||||.+.+-...+. ..++ .+.............-.+.+||.||...-.-.. ..-+
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 4578999999999999999999985332221 1121 111111211122222358999999964321111 1235
Q ss_pred cCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 030525 76 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL 122 (175)
Q Consensus 76 ~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 122 (175)
..-|.+|++.+ ..|....-.+.+.+.+. +.|+.+|-+|+|.
T Consensus 113 ~~yD~fiii~s----~rf~~ndv~La~~i~~~--gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 113 YRYDFFIIISS----ERFTENDVQLAKEIQRM--GKKFYFVRTKVDS 153 (376)
T ss_dssp GG-SEEEEEES----SS--HHHHHHHHHHHHT--T-EEEEEE--HHH
T ss_pred cccCEEEEEeC----CCCchhhHHHHHHHHHc--CCcEEEEEecccc
Confidence 67888888776 34444323555666664 7899999999995
No 276
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.11 E-value=6.4e-10 Score=89.86 Aligned_cols=82 Identities=24% Similarity=0.223 Sum_probs=56.4
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCC-CCCCCCeeeeeEEEEE---------------------EC-CeEEEEEEEeCCC
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVV---------------------VD-GSTVNLGLWDTAG 63 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~---------------------~~-~~~~~~~~~D~~G 63 (175)
++|+++|.||||||||+|++.+.... .++.+++.+....... .+ .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999999987653 3444444222221111 11 1246799999999
Q ss_pred cc----ccccccccc---ccCccEEEEEEECC
Q 030525 64 QE----DYNRLRPLS---YRGADVFILAFSLI 88 (175)
Q Consensus 64 ~~----~~~~~~~~~---~~~~d~vi~v~d~~ 88 (175)
.. +...+...+ ++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 52 333444445 88999999999997
No 277
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.10 E-value=7.3e-10 Score=83.22 Aligned_cols=110 Identities=23% Similarity=0.191 Sum_probs=69.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
.....|+++|.+|+|||||++.+....-........+. ..+. .....++.++||||.. ..+ ....+.+|++++
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~---i~i~-~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvVll 109 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP---ITVV-TGKKRRLTFIECPNDI--NAM-IDIAKVADLVLL 109 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc---EEEE-ecCCceEEEEeCCchH--HHH-HHHHHhcCEEEE
Confidence 35678999999999999999999864211111110011 1111 1235678899999863 111 134688999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCcE-EEEEeCCCCcc
Q 030525 84 AFSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTKLDLRD 124 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~~ 124 (175)
++|.+....... ..++..+... +.|. ++|.||.|+.+
T Consensus 110 viDa~~~~~~~~--~~i~~~l~~~--g~p~vi~VvnK~D~~~ 147 (225)
T cd01882 110 LIDASFGFEMET--FEFLNILQVH--GFPRVMGVLTHLDLFK 147 (225)
T ss_pred EEecCcCCCHHH--HHHHHHHHHc--CCCeEEEEEeccccCC
Confidence 999976544333 2344444432 5675 55999999864
No 278
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=3.9e-10 Score=93.96 Aligned_cols=116 Identities=21% Similarity=0.257 Sum_probs=85.3
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCee-----e----------eeE---EEEE---ECCeEEEEEEEeC
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-----D----------NFS---ANVV---VDGSTVNLGLWDT 61 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~-----~----------~~~---~~~~---~~~~~~~~~~~D~ 61 (175)
+....+|.++|.-+.|||+|+..|.....++-+..+.. + ... .++. .+++.+.+++.||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 35678999999999999999999997654322111110 0 000 1111 2567888999999
Q ss_pred CCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 030525 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL 122 (175)
Q Consensus 62 ~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 122 (175)
||+..|.......++-+|++++++|+.+.-.++.. +.+...++ .+.|+++|.||.|.
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE-r~ikhaiq---~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE-RIIKHAIQ---NRLPIVVVINKVDR 261 (971)
T ss_pred CCcccchHHHHHHhhhcceEEEEEEcccCceeeHH-HHHHHHHh---ccCcEEEEEehhHH
Confidence 99999988777889999999999999988888764 33333333 48999999999994
No 279
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.07 E-value=1.2e-09 Score=81.34 Aligned_cols=115 Identities=20% Similarity=0.210 Sum_probs=64.5
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCC---CCCeeeeeEEEEEECCeEEEEEEEeCCCcccccc--------cc---c
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDY---VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR--------LR---P 72 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------~~---~ 72 (175)
++|+++|.+|+||||++|.+++....... .+.+..........++ ..+.++||||-.+... .. .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 58999999999999999999976543221 1222222233335566 5689999999432111 00 1
Q ss_pred ccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcC-C--CCcEEEEEeCCCCcccc
Q 030525 73 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-P--GVPIILVGTKLDLRDDK 126 (175)
Q Consensus 73 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~--~~p~ilv~nK~Dl~~~~ 126 (175)
....+.|++++|...+ +-+-.. ...++.+.+.. + -..++||.+..|-..+.
T Consensus 79 ~~~~g~ha~llVi~~~-r~t~~~--~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~ 132 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLG-RFTEED--REVLELLQEIFGEEIWKHTIVVFTHADELEDD 132 (212)
T ss_dssp HTTT-ESEEEEEEETT-B-SHHH--HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTT
T ss_pred hccCCCeEEEEEEecC-cchHHH--HHHHHHHHHHccHHHHhHhhHHhhhccccccc
Confidence 1245799999999987 222222 23333333322 1 24688888888865443
No 280
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.06 E-value=2.2e-09 Score=82.92 Aligned_cols=86 Identities=21% Similarity=0.236 Sum_probs=65.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCC-CCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccc-------ccccccc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-------LRPLSYR 76 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-------~~~~~~~ 76 (175)
--..++++|.|+||||||++.+.+.+. ..+|.+|+.......+.+++ ..+|+.|+||.-.-.+ ......+
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R 139 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVAR 139 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeec
Confidence 346899999999999999999998665 45677777666666666655 6799999998432111 1234578
Q ss_pred CccEEEEEEECCChhh
Q 030525 77 GADVFILAFSLISKAS 92 (175)
Q Consensus 77 ~~d~vi~v~d~~~~~s 92 (175)
.||++++|.|+....+
T Consensus 140 ~ADlIiiVld~~~~~~ 155 (365)
T COG1163 140 NADLIIIVLDVFEDPH 155 (365)
T ss_pred cCCEEEEEEecCCChh
Confidence 9999999999996665
No 281
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=2.1e-09 Score=88.01 Aligned_cols=120 Identities=19% Similarity=0.183 Sum_probs=87.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCC-CCCCC----------------CCeeeeeEEEEEECCeEEEEEEEeCCCccc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYV----------------PTVFDNFSANVVVDGSTVNLGLWDTAGQED 66 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~-~~~~~----------------~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 66 (175)
++.-|+.|+.---=|||||..|++.-.- .++.. -|.......-.+.++..+.++++||||+.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 3455888888888999999999994221 11100 111111122233457889999999999999
Q ss_pred ccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 67 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
|.....+.+..++++++++|.+..-.-+.. ..+...++. +..+|.|.||+|++..+.
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~-anf~lAfe~---~L~iIpVlNKIDlp~adp 194 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTV-ANFYLAFEA---GLAIIPVLNKIDLPSADP 194 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHH-HHHHHHHHc---CCeEEEeeeccCCCCCCH
Confidence 999888899999999999999977655555 445545554 899999999999987654
No 282
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=1.6e-09 Score=92.61 Aligned_cols=119 Identities=20% Similarity=0.160 Sum_probs=84.2
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcC--CCCC---CCCCC-eee----------ee-EEEEEECCe-EEEEEEEeCCCc
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSN--TFPT---DYVPT-VFD----------NF-SANVVVDGS-TVNLGLWDTAGQ 64 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~--~~~~---~~~~t-~~~----------~~-~~~~~~~~~-~~~~~~~D~~G~ 64 (175)
.++.-||.|+|.-.+|||||..+++-. .... -...+ ..+ .. ......... .+.++++||||+
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 356779999999999999999999932 1111 01000 011 00 111122223 589999999999
Q ss_pred ccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 65 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
.+|.....+.++-+|++|+|+|+...-..+.. ..|....+. ++|.+++.||+|....
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTE-tv~rqa~~~---~vp~i~fiNKmDR~~a 143 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTE-TVWRQADKY---GVPRILFVNKMDRLGA 143 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHH-HHHHHHhhc---CCCeEEEEECcccccc
Confidence 99999888899999999999999877665554 556554443 8999999999996543
No 283
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.99 E-value=3.2e-09 Score=89.33 Aligned_cols=117 Identities=17% Similarity=0.151 Sum_probs=72.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCC-CCCC-CCCCeeeeeEEEEEECCeEEEEEEEeCCCccccccc----------cc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNT-FPTD-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL----------RP 72 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~-~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~----------~~ 72 (175)
..++|+++|.+|+||||++|++++.. +... ..+.+..........++ ..+.++||||-.+.... ..
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~Ik 194 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSVK 194 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHHH
Confidence 35799999999999999999999865 3222 11222222222223343 57999999997543210 11
Q ss_pred cccc--CccEEEEEEECCChhhHHHHHHHHHHHHhhcC-C--CCcEEEEEeCCCCcc
Q 030525 73 LSYR--GADVFILAFSLISKASYENVAKKWIPELRHYA-P--GVPIILVGTKLDLRD 124 (175)
Q Consensus 73 ~~~~--~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~--~~p~ilv~nK~Dl~~ 124 (175)
.++. .+|++++|..++.......- ..+++.+.... + =..+|||.|+.|...
T Consensus 195 ~~Lsk~gpDVVLlV~RLd~~~~D~eD-~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 195 KFIKKNPPDIVLYVDRLDMQTRDSND-LPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHhcCCCCEEEEEEeCCCccccHHH-HHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 1333 58999999887643332222 35666665554 2 257899999999764
No 284
>PRK09866 hypothetical protein; Provisional
Probab=98.99 E-value=4.4e-09 Score=88.28 Aligned_cols=68 Identities=18% Similarity=0.255 Sum_probs=48.3
Q ss_pred EEEEEeCCCcccc-cc----cccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcc
Q 030525 55 NLGLWDTAGQEDY-NR----LRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (175)
Q Consensus 55 ~~~~~D~~G~~~~-~~----~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 124 (175)
.+.+.||||...- .. .....+.++|+|++|.|.++..+... ..+.+.+.+.+++.|+++|.||+|+.+
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~K~~PVILVVNKIDl~d 303 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVGQSVPLYVLVNKFDQQD 303 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcCCCCCEEEEEEcccCCC
Confidence 4678899997432 11 12235899999999999987655544 345666666544579999999999864
No 285
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=6.2e-09 Score=85.11 Aligned_cols=119 Identities=19% Similarity=0.213 Sum_probs=87.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCe-eeeeEEEEEECC-eEEEEEEEeCCCcccccccccccccCccEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDG-STVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~-~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v 81 (175)
.++.=|.++|.---|||||+..+-............ ......++..+. ....+.|.||||++.|..++.+-.+-+|++
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa 82 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA 82 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence 345568999999999999999998877654433333 333344455441 235789999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 82 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
|+|.+++|.---+.. .-+..++. .++|++++.||+|.++..
T Consensus 83 ILVVa~dDGv~pQTi--EAI~hak~--a~vP~iVAiNKiDk~~~n 123 (509)
T COG0532 83 ILVVAADDGVMPQTI--EAINHAKA--AGVPIVVAINKIDKPEAN 123 (509)
T ss_pred EEEEEccCCcchhHH--HHHHHHHH--CCCCEEEEEecccCCCCC
Confidence 999999976433333 11222333 489999999999998654
No 286
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.94 E-value=6.9e-10 Score=89.92 Aligned_cols=124 Identities=16% Similarity=0.051 Sum_probs=84.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCC-CCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccc--cccc------c
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR--LRPL------S 74 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--~~~~------~ 74 (175)
+..-.++++|.|+||||||++....... ..+|..|+...+.. +.+-+...+++.||||.-+... .+.. .
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vG--H~dykYlrwQViDTPGILD~plEdrN~IEmqsITA 243 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVG--HLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITA 243 (620)
T ss_pred CCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhh--hhhhheeeeeecCCccccCcchhhhhHHHHHHHHH
Confidence 4556899999999999999988886654 34555555444444 3345567899999999533211 0000 0
Q ss_pred c-cCccEEEEEEECCCh--hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccchhhc
Q 030525 75 Y-RGADVFILAFSLISK--ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFI 130 (175)
Q Consensus 75 ~-~~~d~vi~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~ 130 (175)
+ .=-.+|+++.|++.. .|.... -.++..++....|.|+|+|.||+|+.....+.+
T Consensus 244 LAHLraaVLYfmDLSe~CGySva~Q-vkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~ 301 (620)
T KOG1490|consen 244 LAHLRSAVLYFMDLSEMCGYSVAAQ-VKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQ 301 (620)
T ss_pred HHHhhhhheeeeechhhhCCCHHHH-HHHHHHhHHHhcCCceEEEeecccccCccccCH
Confidence 1 112367888888754 577766 677778887778999999999999876554433
No 287
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.93 E-value=1.3e-10 Score=87.86 Aligned_cols=68 Identities=18% Similarity=0.159 Sum_probs=34.9
Q ss_pred EEEEEeCCCcccccccccccc--------cCccEEEEEEECC---ChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCc
Q 030525 55 NLGLWDTAGQEDYNRLRPLSY--------RGADVFILAFSLI---SKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 123 (175)
Q Consensus 55 ~~~~~D~~G~~~~~~~~~~~~--------~~~d~vi~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 123 (175)
.+.++|||||.++...+...- ...-+++++.|.. ++..|-.. .++.......-+.|.+.|.||+|+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~--~L~s~s~~~~~~lP~vnvlsK~Dl~ 169 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSS--LLLSLSIMLRLELPHVNVLSKIDLL 169 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHH--HHHHHHHHHHHTSEEEEEE--GGGS
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHH--HHHHHHHHhhCCCCEEEeeeccCcc
Confidence 689999999977544332221 3455788888875 34444322 1221111111389999999999997
Q ss_pred c
Q 030525 124 D 124 (175)
Q Consensus 124 ~ 124 (175)
+
T Consensus 170 ~ 170 (238)
T PF03029_consen 170 S 170 (238)
T ss_dssp -
T ss_pred c
Confidence 6
No 288
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.92 E-value=5.4e-09 Score=92.68 Aligned_cols=101 Identities=21% Similarity=0.251 Sum_probs=66.8
Q ss_pred CCHHHHHHHhhcCCCCCCCCCCee-eeeEEEEEECC----------------eEEEEEEEeCCCcccccccccccccCcc
Q 030525 17 VGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDG----------------STVNLGLWDTAGQEDYNRLRPLSYRGAD 79 (175)
Q Consensus 17 ~GKTsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~----------------~~~~~~~~D~~G~~~~~~~~~~~~~~~d 79 (175)
++||||+..+.+............ ..-...+..+. ....+.+|||||++.|..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 459999999997655433222211 11111111110 0113899999999999888777888999
Q ss_pred EEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcc
Q 030525 80 VFILAFSLIS---KASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (175)
Q Consensus 80 ~vi~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 124 (175)
++++|+|+++ +++++.+ . .+.. .++|+++|+||+|+..
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I-~----~lk~--~~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAI-N----ILRQ--YKTPFVVAANKIDLIP 592 (1049)
T ss_pred EEEEEEECcccCCHhHHHHH-H----HHHH--cCCCEEEEEECCCCcc
Confidence 9999999987 4555544 2 2333 2689999999999863
No 289
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=1.5e-08 Score=80.67 Aligned_cols=123 Identities=15% Similarity=0.128 Sum_probs=76.1
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHhhcC--CCCC--------------CCCCC----------e---eeee-EEEEEECC
Q 030525 2 SASRFIKCVTVGDGAVGKTCMLISYTSN--TFPT--------------DYVPT----------V---FDNF-SANVVVDG 51 (175)
Q Consensus 2 ~~~~~~ki~v~G~~~~GKTsli~~l~~~--~~~~--------------~~~~t----------~---~~~~-~~~~~~~~ 51 (175)
..+..++++++|...+|||||+-||+-. .+.. ..+.. . +... .......-
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 4567899999999999999999998832 1110 00000 0 0000 11112223
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEECCChh---hH--HHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA---SY--ENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 52 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~---s~--~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
..+.+.+.|+||+.+|-...-.-...||+.|+|.|+.+.+ .| ....+.-.- +.+...=-.+|++.||.|+.+.
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~-La~tlGi~~lIVavNKMD~v~w 160 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAF-LARTLGIKQLIVAVNKMDLVSW 160 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHH-HHHhcCCceEEEEEEccccccc
Confidence 3467999999999887665556778999999999998773 11 111111111 2222223567999999999864
No 290
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.89 E-value=1.6e-08 Score=81.82 Aligned_cols=121 Identities=19% Similarity=0.152 Sum_probs=86.6
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcCC--CCCC---------------CCCCeee-eeEEEEE-ECCeEEEEEEEeCCC
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSNT--FPTD---------------YVPTVFD-NFSANVV-VDGSTVNLGLWDTAG 63 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~~--~~~~---------------~~~t~~~-~~~~~~~-~~~~~~~~~~~D~~G 63 (175)
.+..-|+.|+.---=|||||..|++... ..+. ..-|... ..+-.+. .+|..+.++++||||
T Consensus 6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPG 85 (603)
T COG0481 6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPG 85 (603)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCC
Confidence 3456688888888999999999999532 1110 1111111 1112222 256889999999999
Q ss_pred cccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 64 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
+.+|.-...+.+..+.+.++++|.+..-.-+.+ ...+-.+.+ +..++-|.||+||+..+.
T Consensus 86 HVDFsYEVSRSLAACEGalLvVDAsQGveAQTl-AN~YlAle~---~LeIiPViNKIDLP~Adp 145 (603)
T COG0481 86 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALEN---NLEIIPVLNKIDLPAADP 145 (603)
T ss_pred ccceEEEehhhHhhCCCcEEEEECccchHHHHH-HHHHHHHHc---CcEEEEeeecccCCCCCH
Confidence 999988777889999999999999977555555 445555554 899999999999987643
No 291
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.89 E-value=4.8e-09 Score=82.65 Aligned_cols=75 Identities=19% Similarity=0.242 Sum_probs=54.2
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhH-------HHH--HHHHHHHHhh-cC-CCCcEEEEEeCCC
Q 030525 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY-------ENV--AKKWIPELRH-YA-PGVPIILVGTKLD 121 (175)
Q Consensus 53 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~-------~~~--~~~~~~~~~~-~~-~~~p~ilv~nK~D 121 (175)
...+.++|.+||..-+.-|..++.++++|++|.++++-... ..+ +..+++.+-+ .. .+.++||+.||.|
T Consensus 194 ~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~D 273 (354)
T KOG0082|consen 194 GLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKD 273 (354)
T ss_pred CCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHH
Confidence 46789999999987777788899999999999999743221 222 0122333322 22 5899999999999
Q ss_pred Ccccch
Q 030525 122 LRDDKQ 127 (175)
Q Consensus 122 l~~~~~ 127 (175)
|..++-
T Consensus 274 LFeEKi 279 (354)
T KOG0082|consen 274 LFEEKI 279 (354)
T ss_pred HHHHHh
Confidence 988765
No 292
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.88 E-value=1.7e-08 Score=76.25 Aligned_cols=70 Identities=23% Similarity=0.174 Sum_probs=44.1
Q ss_pred EEEEEEeCCCcccc-------------ccccccccc-CccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 030525 54 VNLGLWDTAGQEDY-------------NRLRPLSYR-GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119 (175)
Q Consensus 54 ~~~~~~D~~G~~~~-------------~~~~~~~~~-~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK 119 (175)
..+.++|+||-... ..+...|++ ..+++++|.|.+..-+-... ..+.+.+.. .+.|+++|.||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~-l~ia~~ld~--~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDA-LKLAKEVDP--QGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhH-HHHHHHHHH--cCCcEEEEEEC
Confidence 46889999996421 112345666 45688999987653222221 234444443 36899999999
Q ss_pred CCCcccc
Q 030525 120 LDLRDDK 126 (175)
Q Consensus 120 ~Dl~~~~ 126 (175)
+|..+..
T Consensus 202 ~D~~~~~ 208 (240)
T smart00053 202 LDLMDEG 208 (240)
T ss_pred CCCCCcc
Confidence 9987543
No 293
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.88 E-value=3.5e-08 Score=77.54 Aligned_cols=117 Identities=21% Similarity=0.244 Sum_probs=73.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCC----------CCCCeeee-eEEEEEECCeEEEEEEEeCCCccccc---cc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD----------YVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYN---RL 70 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~----------~~~t~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~---~~ 70 (175)
..++|+++|++|.|||||+|.|++.....+ ..++.... +...+.-++....++++||||--++- ..
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 478999999999999999999997644322 12222222 22334457888999999999932211 11
Q ss_pred -----------------------ccccc--cCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 71 -----------------------RPLSY--RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 71 -----------------------~~~~~--~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
+...+ .+.|++++..-.+. .....+.-..++.+. +.+.+|-|..|+|..-.
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~DIe~Mk~ls---~~vNlIPVI~KaD~lT~ 177 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLDIEAMKRLS---KRVNLIPVIAKADTLTD 177 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHHHHHHHHHh---cccCeeeeeeccccCCH
Confidence 11112 24677777776553 333333234444454 47899999999997543
No 294
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=2.4e-08 Score=78.86 Aligned_cols=116 Identities=19% Similarity=0.219 Sum_probs=73.2
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCCCCC--------CCC-Ceee-eeEEEEEECCeEEEEEEEeCCCcccccc------
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTD--------YVP-TVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNR------ 69 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~~~~--------~~~-t~~~-~~~~~~~~~~~~~~~~~~D~~G~~~~~~------ 69 (175)
.|+++++|++|.|||||+|+|+...+..+ ... +... .....+.-+|...++++.||||--+.-.
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 58999999999999999999997654432 111 1111 1222344478889999999999322110
Q ss_pred -------------------ccccccc--CccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 70 -------------------LRPLSYR--GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 70 -------------------~~~~~~~--~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
..+.-+. +.|++++....+.. .+..+.-..++.+. ..+.+|-|..|+|..-.
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~---~~vNiIPVI~KaD~lT~ 173 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLS---KKVNLIPVIAKADTLTK 173 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHh---ccccccceeeccccCCH
Confidence 1112233 67888888876533 23333234444444 47999999999997644
No 295
>PRK13768 GTPase; Provisional
Probab=98.87 E-value=3.4e-09 Score=80.97 Aligned_cols=72 Identities=19% Similarity=0.208 Sum_probs=45.2
Q ss_pred EEEEEeCCCcccc---ccccccc---ccC--ccEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 55 NLGLWDTAGQEDY---NRLRPLS---YRG--ADVFILAFSLISKASYENV-AKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 55 ~~~~~D~~G~~~~---~~~~~~~---~~~--~d~vi~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
.+.+||+||+.+. +...+.+ +.. ++++++++|.+...+.... ...|+........+.|+++|+||+|+.+.
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 5889999998653 2232222 222 8999999999654333222 12333332222247999999999998765
Q ss_pred c
Q 030525 126 K 126 (175)
Q Consensus 126 ~ 126 (175)
.
T Consensus 178 ~ 178 (253)
T PRK13768 178 E 178 (253)
T ss_pred h
Confidence 3
No 296
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.86 E-value=3.2e-08 Score=79.43 Aligned_cols=114 Identities=15% Similarity=0.214 Sum_probs=73.6
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcC----CCC-------------CCCCC----Ceeeee--EE--EEE-ECCeEEEEEEE
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSN----TFP-------------TDYVP----TVFDNF--SA--NVV-VDGSTVNLGLW 59 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~----~~~-------------~~~~~----t~~~~~--~~--~~~-~~~~~~~~~~~ 59 (175)
.+-|.|+|+.++|||||+++|.+. ... .+... |+...+ .+ .+. .++...++.++
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI 96 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV 96 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence 567999999999999999999976 222 11112 222222 12 222 25667889999
Q ss_pred eCCCcccc--------cc---c------------------cccccc-CccEEEEEE-ECC----ChhhHHHHHHHHHHHH
Q 030525 60 DTAGQEDY--------NR---L------------------RPLSYR-GADVFILAF-SLI----SKASYENVAKKWIPEL 104 (175)
Q Consensus 60 D~~G~~~~--------~~---~------------------~~~~~~-~~d~vi~v~-d~~----~~~s~~~~~~~~~~~~ 104 (175)
||+|-..- .. . .+..+. .+++.++|. |.+ .++.+....+.|..++
T Consensus 97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL 176 (492)
T TIGR02836 97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL 176 (492)
T ss_pred ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence 99993211 00 0 112234 788888887 653 1234444457888888
Q ss_pred hhcCCCCcEEEEEeCCC
Q 030525 105 RHYAPGVPIILVGTKLD 121 (175)
Q Consensus 105 ~~~~~~~p~ilv~nK~D 121 (175)
+.. +.|+++|.||.|
T Consensus 177 k~~--~kPfiivlN~~d 191 (492)
T TIGR02836 177 KEL--NKPFIILLNSTH 191 (492)
T ss_pred Hhc--CCCEEEEEECcC
Confidence 875 899999999999
No 297
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=2.4e-08 Score=81.92 Aligned_cols=117 Identities=17% Similarity=0.208 Sum_probs=85.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCe-eeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
+++--|.|+|---=|||||+..|-+..........+ ...---.+... .+-.+.|.||||+..|..++.+--+-+|++|
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvV 229 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVV 229 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEE
Confidence 345568899999999999999999876654323222 22222233444 3367899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
+|+..+|.---+.+ .-++..+. .++|+++..||+|.++.
T Consensus 230 LVVAadDGVmpQT~--EaIkhAk~--A~VpiVvAinKiDkp~a 268 (683)
T KOG1145|consen 230 LVVAADDGVMPQTL--EAIKHAKS--ANVPIVVAINKIDKPGA 268 (683)
T ss_pred EEEEccCCccHhHH--HHHHHHHh--cCCCEEEEEeccCCCCC
Confidence 99999987544443 22222333 58999999999998764
No 298
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.84 E-value=9.8e-09 Score=71.56 Aligned_cols=54 Identities=15% Similarity=0.134 Sum_probs=36.8
Q ss_pred EEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCc
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~ 64 (175)
+++++|.+|||||||+|++.+.....-......+.....+.+++ .+.+|||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 89999999999999999999876532111111122233344444 4789999995
No 299
>PTZ00258 GTP-binding protein; Provisional
Probab=98.83 E-value=3.4e-08 Score=79.46 Aligned_cols=84 Identities=20% Similarity=0.161 Sum_probs=56.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCC-CCCCCCCeeeeeEEEEEECCe---------------EEEEEEEeCCCccccc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDYN 68 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~~~~~D~~G~~~~~ 68 (175)
..++|.++|.||||||||+|++.+... ..++..++.+.....+...+. +..+.++|+||-..-.
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga 99 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA 99 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence 467999999999999999999986543 344555554433333333221 3458999999954211
Q ss_pred ----ccc---cccccCccEEEEEEECC
Q 030525 69 ----RLR---PLSYRGADVFILAFSLI 88 (175)
Q Consensus 69 ----~~~---~~~~~~~d~vi~v~d~~ 88 (175)
.+. ...++++|++++|.|..
T Consensus 100 ~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 100 SEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 111 22367899999999973
No 300
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.81 E-value=2.8e-08 Score=80.26 Aligned_cols=119 Identities=16% Similarity=0.148 Sum_probs=84.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhc--CCCCCCCCCCe-------------eeeeEEEEEECCeEEEEEEEeCCCcccccc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTS--NTFPTDYVPTV-------------FDNFSANVVVDGSTVNLGLWDTAGQEDYNR 69 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~--~~~~~~~~~t~-------------~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 69 (175)
..-||+|+.---=|||||+..++. +.|.++..-.. -....++-.++...+++++.||||+.+|-.
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 455899999889999999999994 34433211110 011223333444558899999999999999
Q ss_pred cccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 70 LRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 70 ~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
...+.++=.|++++++|+.+..--+. +..++.... .+.+-|+|.||+|.++.|.
T Consensus 84 EVERvl~MVDgvlLlVDA~EGpMPQT--rFVlkKAl~--~gL~PIVVvNKiDrp~Arp 137 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEGPMPQT--RFVLKKALA--LGLKPIVVINKIDRPDARP 137 (603)
T ss_pred hhhhhhhhcceEEEEEEcccCCCCch--hhhHHHHHH--cCCCcEEEEeCCCCCCCCH
Confidence 88899999999999999987654333 344444433 3788899999999988764
No 301
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.81 E-value=1.2e-08 Score=78.63 Aligned_cols=80 Identities=19% Similarity=0.143 Sum_probs=53.1
Q ss_pred EEEECCCCCCHHHHHHHhhcCCC-CCCCCCCeeeeeEEEEEECCe---------------EEEEEEEeCCCccccc----
Q 030525 9 CVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDYN---- 68 (175)
Q Consensus 9 i~v~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~~~~~D~~G~~~~~---- 68 (175)
|.++|.|+||||||+|++.+... ..++..++.+.....+.+.+. +..++++|+||-.+-.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 57999999999999999998654 344555554443333333321 2359999999954211
Q ss_pred cccc---ccccCccEEEEEEECC
Q 030525 69 RLRP---LSYRGADVFILAFSLI 88 (175)
Q Consensus 69 ~~~~---~~~~~~d~vi~v~d~~ 88 (175)
.+.. ..++++|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1111 2357899999999873
No 302
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.80 E-value=1.5e-08 Score=83.28 Aligned_cols=120 Identities=14% Similarity=0.119 Sum_probs=73.1
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcCCC---CCCC-CC-CeeeeeEE-----------EE---EEC------------C
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTF---PTDY-VP-TVFDNFSA-----------NV---VVD------------G 51 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~~~---~~~~-~~-t~~~~~~~-----------~~---~~~------------~ 51 (175)
.+..++|.++|.-..|||||+..|.+-.. ..+. .. |..-.+.. .. ... +
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 46788999999999999999999995311 1110 00 00000000 00 000 0
Q ss_pred ----eEEEEEEEeCCCcccccccccccccCccEEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 52 ----STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK-ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 52 ----~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
....+.++|+||+++|-.....-+..+|++++|.|+++. ..-+.. +.+ ..+... .-.|+++|.||+|+.+.
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~-ehl-~i~~~l-gi~~iIVvlNKiDlv~~ 186 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTS-EHL-AAVEIM-KLKHIIILQNKIDLVKE 186 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhH-HHH-HHHHHc-CCCcEEEEEecccccCH
Confidence 023689999999988866555667889999999999864 122222 222 222222 12468999999999753
No 303
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.79 E-value=3.5e-08 Score=78.57 Aligned_cols=82 Identities=21% Similarity=0.227 Sum_probs=55.5
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCC-CCCCCCCeeeeeEEEEEECCe---------------EEEEEEEeCCCccccc--
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDYN-- 68 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~~~~~D~~G~~~~~-- 68 (175)
++|.++|.||||||||+|++.+... ..++..++.+.....+.+.+. +..+.+.|+||-..-.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 6899999999999999999997653 344555554443333333221 2358999999954211
Q ss_pred --cc---ccccccCccEEEEEEECC
Q 030525 69 --RL---RPLSYRGADVFILAFSLI 88 (175)
Q Consensus 69 --~~---~~~~~~~~d~vi~v~d~~ 88 (175)
.+ ....++++|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 11 112368999999999984
No 304
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.78 E-value=9e-09 Score=76.19 Aligned_cols=119 Identities=24% Similarity=0.348 Sum_probs=75.5
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCC--CCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccc-----cccccccccCc
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-----NRLRPLSYRGA 78 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-----~~~~~~~~~~~ 78 (175)
.-||+++|-+|+||||+=..+..+-. .......+.+..-.++..-| ...+++||++||+.+ ......-+++.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 45899999999999997544443221 11111111121112222222 366899999999743 22334568899
Q ss_pred cEEEEEEECCChhhHHHHHHHHHH---HHhhcCCCCcEEEEEeCCCCcccc
Q 030525 79 DVFILAFSLISKASYENVAKKWIP---ELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 79 d~vi~v~d~~~~~s~~~~~~~~~~---~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
++.+++||+...+--..+ ..+.+ .+.+..++..+.+..+|.|+....
T Consensus 83 ~vli~vFDves~e~~~D~-~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d 132 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDF-HYYQKCLEALLQNSPEAKIFCLLHKMDLVQED 132 (295)
T ss_pred eeeeeeeeccchhhhhhH-HHHHHHHHHHHhcCCcceEEEEEeechhcccc
Confidence 999999999877655554 44444 344445778889999999997654
No 305
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.76 E-value=2.7e-08 Score=74.19 Aligned_cols=114 Identities=15% Similarity=0.135 Sum_probs=69.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCC---------CCCCeeeeeEE-EEEECCeEEEEEEEeCCCcccc---cccc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD---------YVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQEDY---NRLR 71 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~---------~~~t~~~~~~~-~~~~~~~~~~~~~~D~~G~~~~---~~~~ 71 (175)
-.|+|+|+|.+|.|||||+|.+........ ...|++..... .+.-++...+++++||||--++ ...|
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW 124 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW 124 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence 468999999999999999999996543221 11122221111 2334677888999999993221 1111
Q ss_pred -----------------------ccccc--CccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 030525 72 -----------------------PLSYR--GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL 122 (175)
Q Consensus 72 -----------------------~~~~~--~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 122 (175)
...+. +.|++++....+ ..++..+.-.+++.+.+ -+.++-|..|.|-
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~pt-GhsLrplDieflkrLt~---vvNvvPVIakaDt 196 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPT-GHSLRPLDIEFLKRLTE---VVNVVPVIAKADT 196 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCC-CCccCcccHHHHHHHhh---hheeeeeEeeccc
Confidence 12222 356666666555 34555553455555554 5788889999994
No 306
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.75 E-value=1.1e-07 Score=73.89 Aligned_cols=97 Identities=15% Similarity=0.166 Sum_probs=60.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEE-EEE--ECCeEEEEEEEeCCCcccccccccccccC----
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVV--VDGSTVNLGLWDTAGQEDYNRLRPLSYRG---- 77 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~-~~~--~~~~~~~~~~~D~~G~~~~~~~~~~~~~~---- 77 (175)
..-+|+|+|+.|+|||||+.++.+.+-. .+..+-.|.. .+. .++.-.++.+|-..|..-+..+.+-.+..
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e~~---KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~a 127 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSETV---KKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLA 127 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhccccc---CCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCcc
Confidence 3458999999999999999999986632 2222222322 222 23344567788777765555544333322
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHH
Q 030525 78 ADVFILAFSLISKASYENVAKKWIPEL 104 (175)
Q Consensus 78 ~d~vi~v~d~~~~~s~~~~~~~~~~~~ 104 (175)
--.+|++.|++++...-+..+.|..-+
T Consensus 128 etlviltasms~Pw~~lesLqkWa~Vl 154 (473)
T KOG3905|consen 128 ETLVILTASMSNPWTLLESLQKWASVL 154 (473)
T ss_pred ceEEEEEEecCCcHHHHHHHHHHHHHH
Confidence 237889999999955533337776543
No 307
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.68 E-value=8e-08 Score=68.10 Aligned_cols=54 Identities=17% Similarity=0.127 Sum_probs=35.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCC--CCCCCCeeeeeEEEEEECCeEEEEEEEeCCC
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAG 63 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G 63 (175)
...+++++|.+|||||||+|++.+.... .+...++.. ...+..++ .+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKV--WQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEe--EEEEEcCC---CEEEEECcC
Confidence 4678999999999999999999976542 222222211 11222222 378999999
No 308
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.66 E-value=8.5e-08 Score=69.12 Aligned_cols=54 Identities=22% Similarity=0.182 Sum_probs=36.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCC--CCCCCeeeeeEEEEEECCeEEEEEEEeCCC
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVDGSTVNLGLWDTAG 63 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G 63 (175)
..++++++|.||+|||||+|++.+..... ....++. ....+..+. .+.++||||
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~--~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTK--SMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEc--ceEEEEeCC---CEEEEECcC
Confidence 35799999999999999999999865421 1112221 122223332 488999999
No 309
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.66 E-value=9.2e-08 Score=68.79 Aligned_cols=56 Identities=20% Similarity=0.143 Sum_probs=37.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQ 64 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~ 64 (175)
..++++++|.+|+|||||+|++.+..+... .+..+... ...+..+ ..+.++||||-
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 457999999999999999999998766321 11111111 2223333 35789999994
No 310
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.63 E-value=3.2e-08 Score=76.68 Aligned_cols=138 Identities=19% Similarity=0.175 Sum_probs=90.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCC-CCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcc---------ccccccccc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE---------DYNRLRPLS 74 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~---------~~~~~~~~~ 74 (175)
+.--|.++|..|+|||||++.|..... +.+....+.+........... -.+-+.||.|-- .|+.. ...
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg-~~vlltDTvGFisdLP~~LvaAF~AT-Lee 254 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSG-NFVLLTDTVGFISDLPIQLVAAFQAT-LEE 254 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCC-cEEEEeechhhhhhCcHHHHHHHHHH-HHH
Confidence 344689999999999999999995443 444455555544443444322 357788999931 22222 244
Q ss_pred ccCccEEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcE----EEEEeCCCCcccchhhccCCCCccccccchhcc
Q 030525 75 YRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPI----ILVGTKLDLRDDKQFFIDHPGAVPITTAQVDYK 146 (175)
Q Consensus 75 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~----ilv~nK~Dl~~~~~~~~~~~~~~~vs~~~~~~~ 146 (175)
+..+|.++.|.|+++|..-+.. +..+.-+..+. ++.|. +=|-||+|...... ..+.....++|...|+..
T Consensus 255 VaeadlllHvvDiShP~ae~q~-e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~-e~E~n~~v~isaltgdgl 329 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAEEQR-ETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV-EEEKNLDVGISALTGDGL 329 (410)
T ss_pred HhhcceEEEEeecCCccHHHHH-HHHHHHHHhcCCCcHHHHhHHHhhccccccccccC-ccccCCccccccccCccH
Confidence 6789999999999999877776 77777777776 44444 55677777654432 222333566666666544
No 311
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.63 E-value=8.1e-08 Score=73.07 Aligned_cols=60 Identities=22% Similarity=0.287 Sum_probs=51.6
Q ss_pred ccccccccccccCccEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 65 EDYNRLRPLSYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 65 ~~~~~~~~~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
+++..+.+.+++++|++++|||++++. +++.+ ..|+..+.. .++|+++|+||+||.+++.
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l-~r~l~~~~~--~~i~~vIV~NK~DL~~~~~ 84 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQL-DRFLVVAEA--QNIEPIIVLNKIDLLDDED 84 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHH-HHHHHHHHH--CCCCEEEEEECcccCCCHH
Confidence 577888888999999999999999887 89888 889887765 5899999999999975443
No 312
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.59 E-value=2e-07 Score=65.84 Aligned_cols=55 Identities=20% Similarity=0.194 Sum_probs=37.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEE-EECCeEEEEEEEeCCC
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANV-VVDGSTVNLGLWDTAG 63 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~~~~D~~G 63 (175)
...+++++|.+|+||||+++++.+.... ...++.+....... ..++ .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSA-STSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 4578999999999999999999975532 22333333222222 2222 589999999
No 313
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.59 E-value=1.9e-07 Score=72.29 Aligned_cols=55 Identities=22% Similarity=0.247 Sum_probs=37.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCC--CCCCCeeeeeEEEEEECCeEEEEEEEeCCCc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~ 64 (175)
..++++++|.+|||||||+|++.+..... +...++. ....+..+. .+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~--~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTK--GQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeec--ceEEEEeCC---CEEEEECCCc
Confidence 46899999999999999999999765422 1122221 122333332 4789999997
No 314
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=5.1e-08 Score=72.81 Aligned_cols=115 Identities=17% Similarity=0.291 Sum_probs=73.1
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEE---EECCeEEEEEEEeCCCcccccccc---cccccCccE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANV---VVDGSTVNLGLWDTAGQEDYNRLR---PLSYRGADV 80 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~---~~~~~~~~~~~~D~~G~~~~~~~~---~~~~~~~d~ 80 (175)
-+|+++|-..+||||+..-.... .+++ .|.....+..+ ++.+.-+.|++||.|||-.+-.-. ...++.+.+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhk-MsPn--eTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gA 104 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGA 104 (347)
T ss_pred ceEEEEeecccCcchhhheeeec-cCCC--ceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCe
Confidence 35999999999999976544433 3222 11111111111 233456889999999997653322 234789999
Q ss_pred EEEEEECCCh--hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 81 FILAFSLISK--ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 81 vi~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
.++|.|..+. +...++ ........+.++++.+=+...|.|--.+
T Consensus 105 LifvIDaQddy~eala~L-~~~v~raykvNp~in~EVfiHKvDGLsd 150 (347)
T KOG3887|consen 105 LIFVIDAQDDYMEALARL-HMTVERAYKVNPNINFEVFIHKVDGLSD 150 (347)
T ss_pred EEEEEechHHHHHHHHHH-HHHhhheeecCCCceEEEEEEeccCCch
Confidence 9999998754 233333 3334444455678999999999995544
No 315
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=2.4e-07 Score=74.41 Aligned_cols=119 Identities=17% Similarity=0.149 Sum_probs=80.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhc--CCCCC--------CCCCCee----------eee-EEEEEECCeEEEEEEEeCCC
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTS--NTFPT--------DYVPTVF----------DNF-SANVVVDGSTVNLGLWDTAG 63 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~--~~~~~--------~~~~t~~----------~~~-~~~~~~~~~~~~~~~~D~~G 63 (175)
+.-..+||--|-+|||||...++- +.+.. ....+.. ... ...+..+...+.+++.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 345688999999999999999882 21100 0011111 111 12233455568899999999
Q ss_pred cccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 64 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
+++|....-+-+..+|.+++|.|+...---+.+ .+++-.+- .++|++-+.||.|......
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~--KLfeVcrl--R~iPI~TFiNKlDR~~rdP 150 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL--KLFEVCRL--RDIPIFTFINKLDREGRDP 150 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccCccHHHH--HHHHHHhh--cCCceEEEeeccccccCCh
Confidence 999998877778999999999999755333332 34433332 3899999999999776543
No 316
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.55 E-value=3.1e-07 Score=71.98 Aligned_cols=123 Identities=19% Similarity=0.183 Sum_probs=76.4
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHhhcCCCC----------CCC--CCCeeeee-------------EE--EEE-----
Q 030525 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFP----------TDY--VPTVFDNF-------------SA--NVV----- 48 (175)
Q Consensus 1 m~~~~~~ki~v~G~~~~GKTsli~~l~~~~~~----------~~~--~~t~~~~~-------------~~--~~~----- 48 (175)
|.....++++-+|.---||||||-||+.+.-. ... ..+.+... .. ++.
T Consensus 1 ~~~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRy 80 (431)
T COG2895 1 QQHKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRY 80 (431)
T ss_pred CCcccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeee
Confidence 34567899999999999999999999854210 000 01111100 00 111
Q ss_pred ECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 49 VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 49 ~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
..-.+-+|.+-||||++.|...--.--..||+.|+++|....-.-+.-...++..+. .=..+++..||+||.+-+
T Consensus 81 FsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLL---GIrhvvvAVNKmDLvdy~ 155 (431)
T COG2895 81 FSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLL---GIRHVVVAVNKMDLVDYS 155 (431)
T ss_pred cccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHh---CCcEEEEEEeeecccccC
Confidence 122345799999999999977655667889999999999543211111112222222 235789999999998643
No 317
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.55 E-value=2.5e-08 Score=67.05 Aligned_cols=101 Identities=25% Similarity=0.228 Sum_probs=65.3
Q ss_pred EEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCc----ccccccccccccCccEEEE
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ----EDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~----~~~~~~~~~~~~~~d~vi~ 83 (175)
|++++|..|+|||||.+.+.+...-.. .| .-++.++. -.+||||. .++.........++|.+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lyk--KT------QAve~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~ 70 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYK--KT------QAVEFNDK----GDIDTPGEYFEHPRWYHALITTLQDADVIIY 70 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhc--cc------ceeeccCc----cccCCchhhhhhhHHHHHHHHHhhccceeee
Confidence 799999999999999999987654321 11 11222221 15789994 2222223344689999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
+-.++++.|--.- -+. .. -..|+|=|.+|.||+++.+
T Consensus 71 v~~and~~s~f~p--~f~----~~-~~k~vIgvVTK~DLaed~d 107 (148)
T COG4917 71 VHAANDPESRFPP--GFL----DI-GVKKVIGVVTKADLAEDAD 107 (148)
T ss_pred eecccCccccCCc--ccc----cc-cccceEEEEecccccchHh
Confidence 9999988643221 111 11 1346999999999996544
No 318
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.54 E-value=4.2e-07 Score=70.74 Aligned_cols=56 Identities=20% Similarity=0.258 Sum_probs=37.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCC--CCCCCeeeeeEEEEEECCeEEEEEEEeCCCcc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE 65 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~ 65 (175)
..++++++|.+|||||||+|++.+..... +...++.. ...+..+. .+.++||||-.
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKA--QQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEE--EEEEEeCC---cEEEEECCCcC
Confidence 56899999999999999999999865422 11222211 22233332 47899999973
No 319
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.50 E-value=3.5e-07 Score=72.27 Aligned_cols=57 Identities=21% Similarity=0.182 Sum_probs=38.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeee-eEEEEEECCeEEEEEEEeCCCc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQ 64 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~~~D~~G~ 64 (175)
....+++|+|.|||||||+||+|.+...... .+..+.. ....+..+. .+.++||||-
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~-s~~PG~Tk~~q~i~~~~---~i~LlDtPGi 187 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKT-SNRPGTTKGIQWIKLDD---GIYLLDTPGI 187 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceee-CCCCceecceEEEEcCC---CeEEecCCCc
Confidence 3458899999999999999999998766322 2222222 222333333 2889999995
No 320
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=5.6e-07 Score=71.09 Aligned_cols=118 Identities=23% Similarity=0.246 Sum_probs=76.0
Q ss_pred EEEEECCCCCCHHHHHHHhhcCCCCCCCCCCe--eeeeEEEEE------ECCe---------------------------
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV--FDNFSANVV------VDGS--------------------------- 52 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~--~~~~~~~~~------~~~~--------------------------- 52 (175)
=|+++|.-..||||+|+-|+...|+....... .+.+...++ ++|.
T Consensus 60 mill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~cs 139 (532)
T KOG1954|consen 60 MILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMCS 139 (532)
T ss_pred eEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHHh
Confidence 48899999999999999999887753322211 122211111 1111
Q ss_pred ------EEEEEEEeCCCcc-----------cccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEE
Q 030525 53 ------TVNLGLWDTAGQE-----------DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIIL 115 (175)
Q Consensus 53 ------~~~~~~~D~~G~~-----------~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~il 115 (175)
--.+.++||||.- +|......+..++|.|+++||....+--++. +..++.++. ..-.+-|
T Consensus 140 qmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf-~~vi~aLkG--~EdkiRV 216 (532)
T KOG1954|consen 140 QLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-KRVIDALKG--HEDKIRV 216 (532)
T ss_pred cCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHH-HHHHHHhhC--CcceeEE
Confidence 1148899999942 1333344567899999999998755443444 455555553 3567789
Q ss_pred EEeCCCCcccchh
Q 030525 116 VGTKLDLRDDKQF 128 (175)
Q Consensus 116 v~nK~Dl~~~~~~ 128 (175)
|.||.|..+.++.
T Consensus 217 VLNKADqVdtqqL 229 (532)
T KOG1954|consen 217 VLNKADQVDTQQL 229 (532)
T ss_pred EeccccccCHHHH
Confidence 9999999887664
No 321
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=1.1e-06 Score=69.54 Aligned_cols=83 Identities=20% Similarity=0.128 Sum_probs=57.8
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCC-CCCCCCCeeeeeEEEEEEC----------------CeEEEEEEEeCCCcc---
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVD----------------GSTVNLGLWDTAGQE--- 65 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~----------------~~~~~~~~~D~~G~~--- 65 (175)
.+++.|+|-||||||||.|.+....- ..+|..++-+.....+.+. -....++++|.+|..
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 47899999999999999999997654 3667777644333222211 124678999999843
Q ss_pred -ccccccccc---ccCccEEEEEEECC
Q 030525 66 -DYNRLRPLS---YRGADVFILAFSLI 88 (175)
Q Consensus 66 -~~~~~~~~~---~~~~d~vi~v~d~~ 88 (175)
+=+.+-..| ++.+|+++.|+++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 223333334 68999999999986
No 322
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.43 E-value=4.9e-07 Score=66.02 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=22.2
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCC
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNT 30 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~ 30 (175)
..+++++|.+|||||||+|++....
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKD 151 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999999753
No 323
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.43 E-value=2.2e-06 Score=70.68 Aligned_cols=96 Identities=16% Similarity=0.260 Sum_probs=62.6
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEE-EEE--CCeEEEEEEEeCCCcccccccccccccC----c
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN-VVV--DGSTVNLGLWDTAGQEDYNRLRPLSYRG----A 78 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~-~~~--~~~~~~~~~~D~~G~~~~~~~~~~~~~~----~ 78 (175)
.-.|+|+|+.++|||||+.+|.+.+ ...++..-.|..- +.- .+...++.+|-..|...+..+.+..+.. -
T Consensus 25 ~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~ 101 (472)
T PF05783_consen 25 EKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPN 101 (472)
T ss_pred CceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccc
Confidence 4589999999999999999987643 2334444444332 221 1234568999988866666655444432 2
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHH
Q 030525 79 DVFILAFSLISKASYENVAKKWIPEL 104 (175)
Q Consensus 79 d~vi~v~d~~~~~s~~~~~~~~~~~~ 104 (175)
-.+|+|.|++.+..+-+..+.|+..+
T Consensus 102 t~vvIvlDlS~PW~~~esL~~W~~vl 127 (472)
T PF05783_consen 102 TLVVIVLDLSKPWNIMESLEKWLSVL 127 (472)
T ss_pred eEEEEEecCCChHHHHHHHHHHHHHH
Confidence 48899999999976643336666443
No 324
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=2e-06 Score=67.45 Aligned_cols=121 Identities=19% Similarity=0.173 Sum_probs=72.4
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHhhcC----CCCCCCCCCe----eeeeEEEEEE-------CCeEEEEEEEeCCCcc
Q 030525 1 MSASRFIKCVTVGDGAVGKTCMLISYTSN----TFPTDYVPTV----FDNFSANVVV-------DGSTVNLGLWDTAGQE 65 (175)
Q Consensus 1 m~~~~~~ki~v~G~~~~GKTsli~~l~~~----~~~~~~~~t~----~~~~~~~~~~-------~~~~~~~~~~D~~G~~ 65 (175)
-..+..+|+.++|--.||||+|..++..- .|..+..+++ .+.--....+ .+....+.++|+||+.
T Consensus 2 ~~~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHa 81 (522)
T KOG0461|consen 2 TSPPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHA 81 (522)
T ss_pred CCCCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcH
Confidence 03467899999999999999999999853 2322222222 1111111111 3456788999999986
Q ss_pred cccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 66 DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 66 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
..-.....--.-.|..++|.|+.....-+...-.++.++. -...++|.||+|+-.+
T Consensus 82 sLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~----c~klvvvinkid~lpE 137 (522)
T KOG0461|consen 82 SLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL----CKKLVVVINKIDVLPE 137 (522)
T ss_pred HHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh----ccceEEEEeccccccc
Confidence 4322222223446788999999866444433122333333 2466888888886544
No 325
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.39 E-value=1.4e-06 Score=69.62 Aligned_cols=82 Identities=17% Similarity=0.086 Sum_probs=56.6
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCC--CCCCCCCeeeeeEEEEEECC---------------eEEEEEEEeCCCcccc--
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDG---------------STVNLGLWDTAGQEDY-- 67 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~---------------~~~~~~~~D~~G~~~~-- 67 (175)
+++.|+|.|++|||||++.+.+... ..++..++.......+.+.+ .+..+.+.|.||...-
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7999999999999999999997754 34555554444333333332 1346889999996432
Q ss_pred --cccc---cccccCccEEEEEEECC
Q 030525 68 --NRLR---PLSYRGADVFILAFSLI 88 (175)
Q Consensus 68 --~~~~---~~~~~~~d~vi~v~d~~ 88 (175)
..+. ...++++|++++|.++.
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 1222 23478999999999984
No 326
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.38 E-value=8.4e-06 Score=61.54 Aligned_cols=99 Identities=19% Similarity=0.228 Sum_probs=70.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCC-CCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCccccccc-------ccccc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-------RPLSY 75 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~-------~~~~~ 75 (175)
+--.+|+++|-|.||||||+..+..... ...+..|+.......+++++. .+++.|.||.-.-.+. .-..-
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga--~IQllDLPGIieGAsqgkGRGRQviavA 137 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGA--NIQLLDLPGIIEGASQGKGRGRQVIAVA 137 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCc--eEEEecCcccccccccCCCCCceEEEEe
Confidence 3456999999999999999999886543 456777777777777777774 6899999995321111 11235
Q ss_pred cCccEEEEEEECCChhhHHHHHHHHHHHH
Q 030525 76 RGADVFILAFSLISKASYENVAKKWIPEL 104 (175)
Q Consensus 76 ~~~d~vi~v~d~~~~~s~~~~~~~~~~~~ 104 (175)
+.||.+++|.|.+..+..+.+.+.-+..+
T Consensus 138 rtaDlilMvLDatk~e~qr~~le~ELe~v 166 (364)
T KOG1486|consen 138 RTADLILMVLDATKSEDQREILEKELEAV 166 (364)
T ss_pred ecccEEEEEecCCcchhHHHHHHHHHHHh
Confidence 78999999999997766654434334333
No 327
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.38 E-value=1.1e-06 Score=62.03 Aligned_cols=55 Identities=22% Similarity=0.234 Sum_probs=36.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCC--CCCCCCeeeeeEEEEEECCeEEEEEEEeCCC
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAG 63 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G 63 (175)
....+++++|.+|+|||||+|.+...... .....++..... +..+ ..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~~~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKLD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--EEec---CCEEEEECCC
Confidence 34678999999999999999999986531 122222222211 2222 3588999998
No 328
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=5.3e-06 Score=68.79 Aligned_cols=122 Identities=17% Similarity=0.147 Sum_probs=77.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcC--------------------CCCCCCCC----Ce-----e-eeeEEEEEECCeEE
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSN--------------------TFPTDYVP----TV-----F-DNFSANVVVDGSTV 54 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~--------------------~~~~~~~~----t~-----~-~~~~~~~~~~~~~~ 54 (175)
..++++++|.-.+|||||+-+++.. +..-.+.. |. + ....+..+++-...
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 5789999999999999999888731 11100000 00 0 11122333445567
Q ss_pred EEEEEeCCCcccccccccccccCccEEEEEEECCChh---hHH--HHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 55 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA---SYE--NVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 55 ~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~---s~~--~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
.+.+.|.||+.+|-...-.-...||+.|+|.|++-.. .|+ ...+.....++..+ -..++|+.||.|+.+..+
T Consensus 256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg-i~qlivaiNKmD~V~Wsq 332 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG-ISQLIVAINKMDLVSWSQ 332 (603)
T ss_pred eEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC-cceEEEEeecccccCccH
Confidence 8999999999888776666778899999999997332 221 00123333333332 457899999999987543
No 329
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.34 E-value=4.5e-06 Score=66.04 Aligned_cols=62 Identities=18% Similarity=0.122 Sum_probs=39.5
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 53 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
.+.+.++||+|...-.. .....+|.++++.+.......... +. ..+ ...-++|.||+|+...
T Consensus 148 g~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~-k~--gi~-----E~aDIiVVNKaDl~~~ 209 (332)
T PRK09435 148 GYDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGI-KK--GIM-----ELADLIVINKADGDNK 209 (332)
T ss_pred CCCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHH-Hh--hhh-----hhhheEEeehhcccch
Confidence 46789999999753221 246679999999765445544443 11 111 2234899999998653
No 330
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.33 E-value=6.1e-07 Score=63.71 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|||||||+|.+...
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5799999999999999999976
No 331
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.32 E-value=2.3e-06 Score=78.00 Aligned_cols=110 Identities=23% Similarity=0.223 Sum_probs=62.4
Q ss_pred EEEECCCCCCHHHHHHHhhcCCCCCCC----CCC--eeeeeEEEEEECCeEEEEEEEeCCCcc--------ccccccccc
Q 030525 9 CVTVGDGAVGKTCMLISYTSNTFPTDY----VPT--VFDNFSANVVVDGSTVNLGLWDTAGQE--------DYNRLRPLS 74 (175)
Q Consensus 9 i~v~G~~~~GKTsli~~l~~~~~~~~~----~~t--~~~~~~~~~~~~~~~~~~~~~D~~G~~--------~~~~~~~~~ 74 (175)
.+|+|++|+||||++++- +-.++-.. ..+ ......-.....+ ...++||+|.- .....|..+
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~f 189 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLGF 189 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecC---CEEEEcCCCccccCCCcccccHHHHHHH
Confidence 589999999999999876 33332110 000 0000011122222 24589999931 111223333
Q ss_pred c---------cCccEEEEEEECCChh-----hH----HHHHHHHHHHHhhc-CCCCcEEEEEeCCCCc
Q 030525 75 Y---------RGADVFILAFSLISKA-----SY----ENVAKKWIPELRHY-APGVPIILVGTKLDLR 123 (175)
Q Consensus 75 ~---------~~~d~vi~v~d~~~~~-----s~----~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~ 123 (175)
+ +..++||+++|+.+-- .. ..+ +..+.++.+. .-+.|+.||.||+|+.
T Consensus 190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~l-R~rl~el~~~lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAI-RQRLQELREQLGARFPVYLVLTKADLL 256 (1169)
T ss_pred HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHH-HHHHHHHHHHhCCCCCEEEEEecchhh
Confidence 2 4699999999986442 11 122 3333444433 3589999999999976
No 332
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.30 E-value=2.6e-06 Score=66.57 Aligned_cols=85 Identities=21% Similarity=0.176 Sum_probs=59.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCC-CCCCCCCeeeeeEEEEEEC---------------CeEEEEEEEeCCCcccc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVD---------------GSTVNLGLWDTAGQEDY 67 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~---------------~~~~~~~~~D~~G~~~~ 67 (175)
+..+++.|+|.|+||||||+|.+.+..- ..++..++-+.....+.+. ..+..++++|++|..+-
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 3578999999999999999999997644 5566666655444444432 23567999999985332
Q ss_pred ----ccc---ccccccCccEEEEEEECC
Q 030525 68 ----NRL---RPLSYRGADVFILAFSLI 88 (175)
Q Consensus 68 ----~~~---~~~~~~~~d~vi~v~d~~ 88 (175)
..+ ...-++.+|+++-|+++.
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEec
Confidence 122 223468899999888864
No 333
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.28 E-value=2.5e-06 Score=66.85 Aligned_cols=63 Identities=16% Similarity=0.086 Sum_probs=39.3
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 53 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
.+.+.|.||+|..... ......+|.++++-+. .+-+.+ ......+. +.|.++|.||+|+.+..
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~---~~~~el-~~~~~~l~----~~~~ivv~NK~Dl~~~~ 188 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIP---GTGDDL-QGIKAGLM----EIADIYVVNKADGEGAT 188 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecC---CccHHH-HHHHHHHh----hhccEEEEEcccccchh
Confidence 4678899999954211 1346677888877543 333443 22223232 57889999999997543
No 334
>PRK12288 GTPase RsgA; Reviewed
Probab=98.23 E-value=1.8e-06 Score=68.82 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHhhcCC
Q 030525 9 CVTVGDGAVGKTCMLISYTSNT 30 (175)
Q Consensus 9 i~v~G~~~~GKTsli~~l~~~~ 30 (175)
++++|.+|||||||+|+|+...
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEA 229 (347)
T ss_pred EEEECCCCCCHHHHHHHhcccc
Confidence 6899999999999999999653
No 335
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.21 E-value=1.3e-05 Score=60.18 Aligned_cols=85 Identities=19% Similarity=0.117 Sum_probs=50.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcC--CCCCC--CCCCeeeeeEEEEEE-CCeEEEEEEEeCCCccccccc------cc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFPTD--YVPTVFDNFSANVVV-DGSTVNLGLWDTAGQEDYNRL------RP 72 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~--~~~~~--~~~t~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~------~~ 72 (175)
.+..-|.|+|++++|||+|+|++.+. .|... ..+++.......... .+....+.++||+|....... ..
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 35567899999999999999999988 66322 223332222111111 123467999999997543221 11
Q ss_pred ccccC--ccEEEEEEECC
Q 030525 73 LSYRG--ADVFILAFSLI 88 (175)
Q Consensus 73 ~~~~~--~d~vi~v~d~~ 88 (175)
..+.. ++.+|+..+.+
T Consensus 85 ~~l~~llss~~i~n~~~~ 102 (224)
T cd01851 85 FALATLLSSVLIYNSWET 102 (224)
T ss_pred HHHHHHHhCEEEEeccCc
Confidence 12233 66666666554
No 336
>PRK12289 GTPase RsgA; Reviewed
Probab=98.20 E-value=3.1e-06 Score=67.56 Aligned_cols=22 Identities=23% Similarity=0.444 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHhhcCC
Q 030525 9 CVTVGDGAVGKTCMLISYTSNT 30 (175)
Q Consensus 9 i~v~G~~~~GKTsli~~l~~~~ 30 (175)
++|+|.+|||||||+|+|+...
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCcc
Confidence 7999999999999999999653
No 337
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=5.5e-06 Score=70.57 Aligned_cols=109 Identities=22% Similarity=0.292 Sum_probs=73.1
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCe----eeeeEE---------EEEECC----eEEEEEEEeCCCcccccc
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV----FDNFSA---------NVVVDG----STVNLGLWDTAGQEDYNR 69 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~----~~~~~~---------~~~~~~----~~~~~~~~D~~G~~~~~~ 69 (175)
--++|+|---.|||-|+..+-+..........+ +..|.. .+..++ ...-+.++||||++.|..
T Consensus 476 PIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtn 555 (1064)
T KOG1144|consen 476 PICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTN 555 (1064)
T ss_pred ceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhh
Confidence 358999999999999998888643322211111 111100 000011 112378899999999999
Q ss_pred cccccccCccEEEEEEECCCh---hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 030525 70 LRPLSYRGADVFILAFSLISK---ASYENVAKKWIPELRHYAPGVPIILVGTKLDL 122 (175)
Q Consensus 70 ~~~~~~~~~d~vi~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 122 (175)
++.+.-.-+|.+|+|.|+... ++.+.+ ..++. .+.|+||..||+|.
T Consensus 556 lRsrgsslC~~aIlvvdImhGlepqtiESi-----~lLR~--rktpFivALNKiDR 604 (1064)
T KOG1144|consen 556 LRSRGSSLCDLAILVVDIMHGLEPQTIESI-----NLLRM--RKTPFIVALNKIDR 604 (1064)
T ss_pred hhhccccccceEEEEeehhccCCcchhHHH-----HHHHh--cCCCeEEeehhhhh
Confidence 999999999999999999744 444433 23333 37999999999994
No 338
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.13 E-value=3.8e-06 Score=67.41 Aligned_cols=54 Identities=22% Similarity=0.321 Sum_probs=34.3
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCC-------CCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcc
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTF-------PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE 65 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~-------~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~ 65 (175)
.+++++|.+|||||||+|+++.... ......++.. ...+..++ .+.++||||-.
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~--~~~~~~~~---~~~l~DtPG~~ 215 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLD--LIEIPLDD---GHSLYDTPGII 215 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEee--EEEEEeCC---CCEEEECCCCC
Confidence 4799999999999999999997432 1111222211 11222322 25799999964
No 339
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.13 E-value=6e-06 Score=63.09 Aligned_cols=116 Identities=19% Similarity=0.225 Sum_probs=73.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeE-----EEEEECCeEEEEEEEeCCCcc-------ccccc--
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-----ANVVVDGSTVNLGLWDTAGQE-------DYNRL-- 70 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~-----~~~~~~~~~~~~~~~D~~G~~-------~~~~~-- 70 (175)
-.+||+-+|..|.|||||+..|.+.+|.....+-...... +...-.+...++.+.||.|-. .|...
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd 120 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD 120 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence 3689999999999999999999998886553333222221 122235677889999999921 11111
Q ss_pred -----cccc-------------c--cCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcc
Q 030525 71 -----RPLS-------------Y--RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (175)
Q Consensus 71 -----~~~~-------------~--~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 124 (175)
...| + .++|++++.++.+ ..++..+.-.-++.+. +.+.+|-|+.|.|-..
T Consensus 121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PT-GH~LKslDLvtmk~Ld---skVNIIPvIAKaDtis 190 (406)
T KOG3859|consen 121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPT-GHSLKSLDLVTMKKLD---SKVNIIPVIAKADTIS 190 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCC-CcchhHHHHHHHHHHh---hhhhhHHHHHHhhhhh
Confidence 0111 1 3577888877776 3445544223344444 4678888888888654
No 340
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.11 E-value=2e-05 Score=65.59 Aligned_cols=112 Identities=21% Similarity=0.244 Sum_probs=73.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEE-EECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANV-VVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
+.++-++|+||||.|||||+.++...-.. .+ .+.....+ .+.++...+++.++|. +..++. ..-+-||.++
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk----~t-i~~i~GPiTvvsgK~RRiTflEcp~--Dl~~mi-DvaKIaDLVl 138 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTK----QT-IDEIRGPITVVSGKTRRITFLECPS--DLHQMI-DVAKIADLVL 138 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHH----hh-hhccCCceEEeecceeEEEEEeChH--HHHHHH-hHHHhhheeE
Confidence 57888999999999999999888853110 01 11112222 2467778899999983 333322 2346799999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCC-cEEEEEeCCCCcccch
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYAPGV-PIILVGTKLDLRDDKQ 127 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p~ilv~nK~Dl~~~~~ 127 (175)
++.|..-.-..+.+ .++..+... .. .++-|.++.|+.....
T Consensus 139 LlIdgnfGfEMETm--EFLnil~~H--GmPrvlgV~ThlDlfk~~s 180 (1077)
T COG5192 139 LLIDGNFGFEMETM--EFLNILISH--GMPRVLGVVTHLDLFKNPS 180 (1077)
T ss_pred EEeccccCceehHH--HHHHHHhhc--CCCceEEEEeecccccChH
Confidence 99998765555555 455555443 33 4577999999986543
No 341
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.11 E-value=1e-05 Score=69.05 Aligned_cols=115 Identities=17% Similarity=0.148 Sum_probs=77.2
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcCC--CCCCCCC------------Ceeeee-EEEEEECCeEEEEEEEeCCCcccc
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVP------------TVFDNF-SANVVVDGSTVNLGLWDTAGQEDY 67 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~~--~~~~~~~------------t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~ 67 (175)
.+..-+++++.--.=|||||...|+... ....-.. +.+... ...+..-.+++.++++|+||+.+|
T Consensus 6 ~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf 85 (887)
T KOG0467|consen 6 SEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDF 85 (887)
T ss_pred CCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccch
Confidence 4556789999999999999999998421 1111111 111111 112333346789999999999999
Q ss_pred cccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 030525 68 NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121 (175)
Q Consensus 68 ~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 121 (175)
.+......+=+|+.+++.|+...-.-+.. ..+.+... ++...++|.||+|
T Consensus 86 ~sevssas~l~d~alvlvdvvegv~~qt~--~vlrq~~~--~~~~~~lvinkid 135 (887)
T KOG0467|consen 86 SSEVSSASRLSDGALVLVDVVEGVCSQTY--AVLRQAWI--EGLKPILVINKID 135 (887)
T ss_pred hhhhhhhhhhcCCcEEEEeeccccchhHH--HHHHHHHH--ccCceEEEEehhh
Confidence 99887888889999999999766433332 22222221 3678899999999
No 342
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.10 E-value=1.4e-05 Score=56.77 Aligned_cols=63 Identities=13% Similarity=-0.022 Sum_probs=36.5
Q ss_pred EEEEEEeCCCcccccccc--------cccccCccEEEEEEECCChhhHH-HHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 030525 54 VNLGLWDTAGQEDYNRLR--------PLSYRGADVFILAFSLISKASYE-NVAKKWIPELRHYAPGVPIILVGTKLDL 122 (175)
Q Consensus 54 ~~~~~~D~~G~~~~~~~~--------~~~~~~~d~vi~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 122 (175)
....+.|++|..+-.... ....-..|.++.+.|..+-.... +. ..+..++.. .=++|.||+|+
T Consensus 87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~-~~~~~Qi~~-----ad~ivlnk~dl 158 (158)
T cd03112 87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQ-TEAQSQIAF-----ADRILLNKTDL 158 (158)
T ss_pred CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhcc-HHHHHHHHH-----CCEEEEecccC
Confidence 456788999964322211 11234688999999975433221 22 344444443 33569999996
No 343
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.07 E-value=8.5e-06 Score=62.03 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHhhcCC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNT 30 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~ 30 (175)
.++++|.+|||||||+|++....
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhh
Confidence 67899999999999999999753
No 344
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.07 E-value=4.9e-06 Score=64.75 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.3
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCC
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNT 30 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~ 30 (175)
-.++++|++|||||||+|.+.+..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchh
Confidence 368999999999999999999754
No 345
>PRK13796 GTPase YqeH; Provisional
Probab=98.02 E-value=9.7e-06 Score=65.18 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.9
Q ss_pred eEEEEECCCCCCHHHHHHHhhcC
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.+++++|.+|||||||+|++...
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~ 183 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKE 183 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhh
Confidence 47999999999999999999954
No 346
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.02 E-value=5.9e-06 Score=63.04 Aligned_cols=113 Identities=17% Similarity=0.119 Sum_probs=66.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCC-Ceeeee-EEEEEECCeEEEEEEEeCCC----------ccccccccc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP-TVFDNF-SANVVVDGSTVNLGLWDTAG----------QEDYNRLRP 72 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~-t~~~~~-~~~~~~~~~~~~~~~~D~~G----------~~~~~~~~~ 72 (175)
....++++|-++||||||+|.+...+-...... ..+... .....+ .-.+.+.|.|| ..++.....
T Consensus 135 ~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v---~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~ 211 (320)
T KOG2486|consen 135 KRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV---GKSWYEVDLPGYGRAGYGFELPADWDKFTK 211 (320)
T ss_pred CCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec---cceEEEEecCCcccccCCccCcchHhHhHH
Confidence 457899999999999999999998765433332 222211 112222 34578899999 123333444
Q ss_pred ccccCc---cEEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 73 LSYRGA---DVFILAFSLISK-ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 73 ~~~~~~---d~vi~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
.|+.+- --+.++.|++.+ .--+.....|+ .+ .++|..+|.||||....
T Consensus 212 ~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~---ge--~~VP~t~vfTK~DK~k~ 263 (320)
T KOG2486|consen 212 SYLLERENLVRVFLLVDASVPIQPTDNPEIAWL---GE--NNVPMTSVFTKCDKQKK 263 (320)
T ss_pred HHHHhhhhhheeeeeeeccCCCCCCChHHHHHH---hh--cCCCeEEeeehhhhhhh
Confidence 454332 234555665533 11122212343 33 47999999999997543
No 347
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.01 E-value=1.3e-05 Score=61.76 Aligned_cols=120 Identities=20% Similarity=0.217 Sum_probs=73.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcC----------CCCCCC-CCCe----eeeeEEEEEECCeEEEEEEEeCCCccccc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSN----------TFPTDY-VPTV----FDNFSANVVVDGSTVNLGLWDTAGQEDYN 68 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~----------~~~~~~-~~t~----~~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 68 (175)
...+||..+|--.=|||||.-.+..- .|.... .|-. ......++.+.-.....-..|+||+.+|-
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv 89 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHH
Confidence 35789999999999999998777631 111110 1111 01112233333333457789999998875
Q ss_pred ccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCC-cEEEEEeCCCCcccch
Q 030525 69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGV-PIILVGTKLDLRDDKQ 127 (175)
Q Consensus 69 ~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p~ilv~nK~Dl~~~~~ 127 (175)
.+--.--.++|+.|+|++.+|..--+.. +..+ ..++. .+ .++++.||+|+.+++.
T Consensus 90 KNMItgAaqmDgAILVVsA~dGpmPqTr-EHiL-larqv--Gvp~ivvflnK~Dmvdd~e 145 (394)
T COG0050 90 KNMITGAAQMDGAILVVAATDGPMPQTR-EHIL-LARQV--GVPYIVVFLNKVDMVDDEE 145 (394)
T ss_pred HHHhhhHHhcCccEEEEEcCCCCCCcch-hhhh-hhhhc--CCcEEEEEEecccccCcHH
Confidence 5433445678999999999987443333 2221 11221 44 5678899999997543
No 348
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.97 E-value=1.8e-05 Score=61.37 Aligned_cols=58 Identities=16% Similarity=0.185 Sum_probs=35.1
Q ss_pred EEEEECCCCCCHHHHHHHhhcCC------CCCCC-CCCeeeeeEEEEEECCeEEEEEEEeCCCccccc
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNT------FPTDY-VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN 68 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~------~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 68 (175)
-.+++|.+|||||||+|++.... .+... ..........-+..++.. .+.||||-..+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence 56899999999999999999632 22221 111122233334443222 489999976543
No 349
>PRK00098 GTPase RsgA; Reviewed
Probab=97.95 E-value=1.1e-05 Score=63.19 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHhhcCC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNT 30 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~ 30 (175)
.++++|.+|||||||+|.+.+..
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 58899999999999999999654
No 350
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.93 E-value=0.00022 Score=50.47 Aligned_cols=113 Identities=21% Similarity=0.264 Sum_probs=67.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCC-Cccc--------------cc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTA-GQED--------------YN 68 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~-G~~~--------------~~ 68 (175)
+..+||.|.|+|||||||++.++.+.--... ......+...+..+++..=|.+.|.. |... |.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g--~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~ 80 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKG--YKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG 80 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcC--ceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence 4678999999999999999998885322111 22344555666667777778888877 3111 00
Q ss_pred c-----------cccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCC
Q 030525 69 R-----------LRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDL 122 (175)
Q Consensus 69 ~-----------~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl 122 (175)
- ..+..++.||++| .|---+.-+. ++.+.+.+.... .+.|++.+..+.+-
T Consensus 81 V~v~~le~i~~~al~rA~~~aDvII--IDEIGpMElk--s~~f~~~ve~vl~~~kpliatlHrrsr 142 (179)
T COG1618 81 VNVEGLEEIAIPALRRALEEADVII--IDEIGPMELK--SKKFREAVEEVLKSGKPLIATLHRRSR 142 (179)
T ss_pred eeHHHHHHHhHHHHHHHhhcCCEEE--Eecccchhhc--cHHHHHHHHHHhcCCCcEEEEEecccC
Confidence 0 0112234566655 3433333222 245555555554 57888888887754
No 351
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=9.3e-05 Score=62.70 Aligned_cols=66 Identities=18% Similarity=0.242 Sum_probs=44.3
Q ss_pred EEEEeCCCccc---ccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 56 LGLWDTAGQED---YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 56 ~~~~D~~G~~~---~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
+.+.|.||.+. ..+-...+..++|++|+|.+.-+..+..+ +.++....+. +..+.++-||.|....
T Consensus 208 ivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se--k~Ff~~vs~~--KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 208 IVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE--KQFFHKVSEE--KPNIFILNNKWDASAS 276 (749)
T ss_pred ceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH--HHHHHHhhcc--CCcEEEEechhhhhcc
Confidence 66789999643 22233456789999999999876665555 4666666653 4555666677797655
No 352
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=2e-06 Score=69.00 Aligned_cols=116 Identities=16% Similarity=0.071 Sum_probs=83.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcC--CC---CCCCCCCee------------eeeEEEEEECCeEEEEEEEeCCCcccc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSN--TF---PTDYVPTVF------------DNFSANVVVDGSTVNLGLWDTAGQEDY 67 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~--~~---~~~~~~t~~------------~~~~~~~~~~~~~~~~~~~D~~G~~~~ 67 (175)
+.-+|.|+..-.+||||...|++-- .. ..-....+. .....-+..+.++++++++||||+.+|
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 3458889999999999999998831 10 000011111 111234556788899999999999999
Q ss_pred cccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcc
Q 030525 68 NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (175)
Q Consensus 68 ~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 124 (175)
+-...++++-.|+++.|+|.+-...-+.+ ..|...-+ -++|.....||.|...
T Consensus 116 ~leverclrvldgavav~dasagve~qtl-tvwrqadk---~~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 116 RLEVERCLRVLDGAVAVFDASAGVEAQTL-TVWRQADK---FKIPAHCFINKMDKLA 168 (753)
T ss_pred EEEHHHHHHHhcCeEEEEeccCCccccee-eeehhccc---cCCchhhhhhhhhhhh
Confidence 98888999999999999999866555555 56654322 3799999999999643
No 353
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.83 E-value=7.4e-05 Score=43.47 Aligned_cols=43 Identities=26% Similarity=0.389 Sum_probs=30.8
Q ss_pred ccEEEEEEECCCh--hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 030525 78 ADVFILAFSLISK--ASYENVAKKWIPELRHYAPGVPIILVGTKLD 121 (175)
Q Consensus 78 ~d~vi~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 121 (175)
.+++++++|++.. .+.+.. -.+++.++...++.|+++|.||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q-~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQ-LSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHH-HHHHHHHHHHTTTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHH-HHHHHHHHHHcCCCCEEEEEeccC
Confidence 5789999999855 567776 678888888888999999999998
No 354
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.79 E-value=2.9e-05 Score=70.01 Aligned_cols=115 Identities=23% Similarity=0.159 Sum_probs=59.1
Q ss_pred EEEECCCCCCHHHHHHHhhcC-CCCCCCCCC-eeeeeEEEEEECCeEEEEEEEeCCCccc--------cccccc------
Q 030525 9 CVTVGDGAVGKTCMLISYTSN-TFPTDYVPT-VFDNFSANVVVDGSTVNLGLWDTAGQED--------YNRLRP------ 72 (175)
Q Consensus 9 i~v~G~~~~GKTsli~~l~~~-~~~~~~~~t-~~~~~~~~~~~~~~~~~~~~~D~~G~~~--------~~~~~~------ 72 (175)
.+|+|++|+||||++..--.. .+.+..... .....+.... ....-.-.++||.|.-. -...|.
T Consensus 128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cd-wwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lL 206 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCD-WWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLL 206 (1188)
T ss_pred eEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccC-cccccceEEEcCCcceecccCcchhhHHHHHHHHHHH
Confidence 479999999999998433221 111110000 0000011000 11122356889988321 111222
Q ss_pred ---ccccCccEEEEEEECCChhhH----H-HHHHHH---HHHHhhc-CCCCcEEEEEeCCCCcc
Q 030525 73 ---LSYRGADVFILAFSLISKASY----E-NVAKKW---IPELRHY-APGVPIILVGTKLDLRD 124 (175)
Q Consensus 73 ---~~~~~~d~vi~v~d~~~~~s~----~-~~~~~~---~~~~~~~-~~~~p~ilv~nK~Dl~~ 124 (175)
+-.+..++||+..|+.+.-+- . +....+ +.++... .-..|+.|++||.|+..
T Consensus 207 kk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 207 KKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 224679999999998643211 1 111122 2223222 24899999999999865
No 355
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=0.00012 Score=55.39 Aligned_cols=112 Identities=15% Similarity=0.211 Sum_probs=67.8
Q ss_pred EEEEECCCCC--CHHHHHHHhhcCCCCCCCCCCe-eeeeEEEEEECCeEEE--EEEEeCCCcccccccccccccCccEEE
Q 030525 8 KCVTVGDGAV--GKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVN--LGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 8 ki~v~G~~~~--GKTsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~--~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
-++|+|.+|| ||-+|++|+....|.....+.. ...+.. +++++.+. +.+.-.+-.+.+.-.....-....+++
T Consensus 6 ~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgw--tid~kyysadi~lcishicde~~lpn~~~a~pl~a~v 83 (418)
T KOG4273|consen 6 CALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGW--TIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFV 83 (418)
T ss_pred eEEEecccccccchHHHHHHhcchhheeeccccCceeeece--EecceeeecceeEEeecccchhccCCcccccceeeEE
Confidence 4688999999 9999999999988865433322 111222 23333332 222222222222111112234466899
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCc
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 123 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 123 (175)
++||.+....+..+ +.|+..-... .---++.+|||.|..
T Consensus 84 mvfdlse~s~l~al-qdwl~htdin-sfdillcignkvdrv 122 (418)
T KOG4273|consen 84 MVFDLSEKSGLDAL-QDWLPHTDIN-SFDILLCIGNKVDRV 122 (418)
T ss_pred EEEeccchhhhHHH-Hhhccccccc-cchhheecccccccc
Confidence 99999999999998 8898643321 112347899999954
No 356
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.79 E-value=3.2e-05 Score=63.52 Aligned_cols=55 Identities=16% Similarity=0.152 Sum_probs=39.6
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCe-eeeeEEEEEECCeEEEEEEEeCCCc
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQ 64 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~~~D~~G~ 64 (175)
.+.|.++|.|||||||+||.|.+.+-..= +.|. .+.+-.++.+.. .+.+.|+||.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsV-S~TPGkTKHFQTi~ls~---~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSV-SSTPGKTKHFQTIFLSP---SVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeee-ecCCCCcceeEEEEcCC---CceecCCCCc
Confidence 68999999999999999999999876432 2222 233444454443 3679999995
No 357
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.75 E-value=0.00017 Score=60.03 Aligned_cols=68 Identities=19% Similarity=0.145 Sum_probs=44.1
Q ss_pred EEEEEeCCCcc-------------cccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCC
Q 030525 55 NLGLWDTAGQE-------------DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKL 120 (175)
Q Consensus 55 ~~~~~D~~G~~-------------~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~ 120 (175)
...+.|.||.- ...++...|+.+.+++|+|.--. |.+......-+.+.+.. .+...|+|.+|.
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG---SVDAERSnVTDLVsq~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG---SVDAERSIVTDLVSQMDPHGRRTIFVLTKV 489 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC---CcchhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence 46789999931 12234456889999999998643 23222123344444443 367889999999
Q ss_pred CCccc
Q 030525 121 DLRDD 125 (175)
Q Consensus 121 Dl~~~ 125 (175)
|+.+.
T Consensus 490 DlAEk 494 (980)
T KOG0447|consen 490 DLAEK 494 (980)
T ss_pred chhhh
Confidence 98765
No 358
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.69 E-value=4.5e-05 Score=53.00 Aligned_cols=52 Identities=13% Similarity=0.128 Sum_probs=36.5
Q ss_pred ccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 73 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 73 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
..++++|++++|+|+.++.+... ..+.+.+.....+.|+++|+||+|+.++.
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~--~~l~~~l~~~~~~k~~iivlNK~DL~~~~ 58 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRP--PDLERYVKEVDPRKKNILLLNKADLLTEE 58 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCC--HHHHHHHHhccCCCcEEEEEechhcCCHH
Confidence 45789999999999998865542 12333333222478999999999996543
No 359
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.68 E-value=0.0013 Score=53.47 Aligned_cols=117 Identities=18% Similarity=0.281 Sum_probs=71.1
Q ss_pred eEEEEECCCCCCHHHHHHHhhcC-----------------CCCC----CCCCCeeeee----EEEEEE-CCeEEEEEEEe
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSN-----------------TFPT----DYVPTVFDNF----SANVVV-DGSTVNLGLWD 60 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~-----------------~~~~----~~~~t~~~~~----~~~~~~-~~~~~~~~~~D 60 (175)
+=+.|+||-.+|||||+.||..- +.+. .+.-|++..+ ...+.+ ++..++++++|
T Consensus 18 IYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLiD 97 (492)
T PF09547_consen 18 IYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLID 97 (492)
T ss_pred eEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEEe
Confidence 45889999999999999999842 1111 1111222222 223444 57789999999
Q ss_pred CCCc--------c---cccccccc------------------cccC--ccEEEEEEECC----ChhhHHHHHHHHHHHHh
Q 030525 61 TAGQ--------E---DYNRLRPL------------------SYRG--ADVFILAFSLI----SKASYENVAKKWIPELR 105 (175)
Q Consensus 61 ~~G~--------~---~~~~~~~~------------------~~~~--~d~vi~v~d~~----~~~s~~~~~~~~~~~~~ 105 (175)
+.|- . .-+-.... .+++ .-++|+.-|-+ .++.+....+....+++
T Consensus 98 CVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ELk 177 (492)
T PF09547_consen 98 CVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEELK 177 (492)
T ss_pred ecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHHH
Confidence 9981 0 00111111 1122 33566655554 34566666688888888
Q ss_pred hcCCCCcEEEEEeCCCCccc
Q 030525 106 HYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 106 ~~~~~~p~ilv~nK~Dl~~~ 125 (175)
.. +.|++++.|-.+=..+
T Consensus 178 ~i--gKPFvillNs~~P~s~ 195 (492)
T PF09547_consen 178 EI--GKPFVILLNSTKPYSE 195 (492)
T ss_pred Hh--CCCEEEEEeCCCCCCH
Confidence 86 7899999998875443
No 360
>PRK00098 GTPase RsgA; Reviewed
Probab=97.65 E-value=8.1e-05 Score=58.28 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=40.1
Q ss_pred cccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcc
Q 030525 74 SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (175)
Q Consensus 74 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 124 (175)
...++|.+++|+|++++.+.......|+..+.. .++|+++|+||+|+.+
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~~ 125 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLLD 125 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcCC
Confidence 358999999999999887666655778777665 4799999999999963
No 361
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.64 E-value=8.6e-05 Score=57.85 Aligned_cols=51 Identities=22% Similarity=0.298 Sum_probs=42.6
Q ss_pred cccccCccEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 72 PLSYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 72 ~~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
+..+.++|.+++|+|++++. ++..+ +.|+..+.. .++|+++|+||+||.++
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~l-dr~L~~~~~--~~ip~iIVlNK~DL~~~ 124 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLL-DRYLVAAEA--AGIEPVIVLTKADLLDD 124 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHH-HHHHHHHHH--cCCCEEEEEEHHHCCCh
Confidence 34588999999999999987 88877 678877765 47999999999999654
No 362
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.64 E-value=4.7e-05 Score=63.70 Aligned_cols=117 Identities=17% Similarity=0.177 Sum_probs=76.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcC-----CCCC-CCCCCeeeee-----------EEEEEECCeEEEEEEEeCCCcccc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSN-----TFPT-DYVPTVFDNF-----------SANVVVDGSTVNLGLWDTAGQEDY 67 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~-----~~~~-~~~~t~~~~~-----------~~~~~~~~~~~~~~~~D~~G~~~~ 67 (175)
+.-+|.+.-.--+||||+-+|.+-- .+.+ ....++.+.. ..-.......++++++||||+-+|
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 3446777777889999999988831 1110 0011111110 011112234688999999999999
Q ss_pred cccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 68 NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 68 ~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
.-...+.++-.|+.|++.|....-.-+.. ..|.. +.++ ++|.+...||.|.-..
T Consensus 118 T~EVeRALrVlDGaVlvl~aV~GVqsQt~-tV~rQ-~~ry--~vP~i~FiNKmDRmGa 171 (721)
T KOG0465|consen 118 TFEVERALRVLDGAVLVLDAVAGVESQTE-TVWRQ-MKRY--NVPRICFINKMDRMGA 171 (721)
T ss_pred EEEehhhhhhccCeEEEEEcccceehhhH-HHHHH-HHhc--CCCeEEEEehhhhcCC
Confidence 88888899999999999998755333333 44544 4443 8999999999996544
No 363
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=97.62 E-value=0.00011 Score=59.69 Aligned_cols=74 Identities=20% Similarity=0.216 Sum_probs=54.3
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCCh----------hhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCC
Q 030525 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----------ASYENVAKKWIPELRHYA-PGVPIILVGTKLDL 122 (175)
Q Consensus 54 ~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl 122 (175)
..+.++|.+|+...+.-|..++.++++||+|.++++- ..+.+....|-..+.... .+.|++|+.||.|+
T Consensus 236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence 5689999999988888888999999999999998622 233333244444444333 68999999999998
Q ss_pred cccch
Q 030525 123 RDDKQ 127 (175)
Q Consensus 123 ~~~~~ 127 (175)
..++-
T Consensus 316 f~~Kl 320 (389)
T PF00503_consen 316 FEEKL 320 (389)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 77653
No 364
>PRK12289 GTPase RsgA; Reviewed
Probab=97.61 E-value=0.00014 Score=58.13 Aligned_cols=54 Identities=22% Similarity=0.320 Sum_probs=41.2
Q ss_pred ccccccccCccEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 69 RLRPLSYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 69 ~~~~~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
.+.+..+.++|.+++|+|+.++. ....+ ..|+..+.. .++|+++|+||+||.++
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~L-dR~L~~a~~--~~ip~ILVlNK~DLv~~ 135 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQL-SRFLVKAES--TGLEIVLCLNKADLVSP 135 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHH-HHHHHHHHH--CCCCEEEEEEchhcCCh
Confidence 34455689999999999999775 44454 667766643 47999999999999754
No 365
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.59 E-value=0.00023 Score=58.18 Aligned_cols=113 Identities=16% Similarity=0.049 Sum_probs=60.0
Q ss_pred eeEEEEECCCCCCHHHHHHHhhc-----C-CC----CCCCCCCeee-------eeEEEEE--E---C-------------
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTS-----N-TF----PTDYVPTVFD-------NFSANVV--V---D------------- 50 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~-----~-~~----~~~~~~t~~~-------~~~~~~~--~---~------------- 50 (175)
+--|+++|.+||||||++..+.. + +. .+.+.+...+ .....+. . +
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 56789999999999999988862 1 11 1111111000 0000101 0 0
Q ss_pred CeEEEEEEEeCCCcccccccccc------cccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcc
Q 030525 51 GSTVNLGLWDTAGQEDYNRLRPL------SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (175)
Q Consensus 51 ~~~~~~~~~D~~G~~~~~~~~~~------~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 124 (175)
...+.+.|+||+|........-. .....|-+++|.|.+-.+.-.+. ...+.+. -.+.-+|.||.|-..
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~----a~~F~~~--~~~~g~IlTKlD~~a 253 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ----AKAFKDS--VDVGSVIITKLDGHA 253 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHH----HHHHHhc--cCCcEEEEECccCCC
Confidence 02467899999996432211111 12356789999998644322222 2222221 235678889999643
No 366
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.55 E-value=8e-05 Score=59.49 Aligned_cols=57 Identities=23% Similarity=0.283 Sum_probs=39.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCC-CCCCCCeeeeeEEEEEECCeEEEEEEEeCCCc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~ 64 (175)
++.+++.|+|-|+|||||+||+|.....- -...|. .+.....+..+. .+.+.|.||.
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pG-vT~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPG-VTRSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCcc-chhhhhheeccC---CceeccCCce
Confidence 46789999999999999999999977652 111222 222233444443 5889999994
No 367
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=97.54 E-value=2.3e-05 Score=58.58 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=19.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHh
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISY 26 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l 26 (175)
.+.+|++++|...|||||++.+.
T Consensus 37 rrelkllllgtgesgkstfikqm 59 (359)
T KOG0085|consen 37 RRELKLLLLGTGESGKSTFIKQM 59 (359)
T ss_pred hhhheeeeecCCCcchhhHHHHH
Confidence 46789999999999999999543
No 368
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.54 E-value=7.8e-05 Score=57.86 Aligned_cols=60 Identities=18% Similarity=0.182 Sum_probs=36.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee------EEEEEECCeEEEEEEEeCCCc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF------SANVVVDGSTVNLGLWDTAGQ 64 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~------~~~~~~~~~~~~~~~~D~~G~ 64 (175)
+...+++|+|.||+|||||+|.+............++... ...+.+.+.+ .+.+.||||.
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi 206 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI 206 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence 4678999999999999999998885433221111111111 1123333322 3789999995
No 369
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.52 E-value=0.00011 Score=54.42 Aligned_cols=28 Identities=21% Similarity=0.121 Sum_probs=25.8
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHhhc
Q 030525 1 MSASRFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 1 m~~~~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
|.+++..-|.|+|++|||||||++.+.+
T Consensus 1 ~~~~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 1 MDKPKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCCCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 7788889999999999999999999875
No 370
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.52 E-value=7e-05 Score=50.31 Aligned_cols=22 Identities=14% Similarity=0.216 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.|+|.|++||||||+.+.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 371
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.51 E-value=5.8e-05 Score=55.04 Aligned_cols=52 Identities=25% Similarity=0.355 Sum_probs=37.2
Q ss_pred ccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcc
Q 030525 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (175)
Q Consensus 67 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 124 (175)
+..+...+++++|++++|+|+++...- |...+.....+.|+++|+||+|+.+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~------~~~~l~~~~~~~~~ilV~NK~Dl~~ 75 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS------LIPRLRLFGGNNPVILVGNKIDLLP 75 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc------cchhHHHhcCCCcEEEEEEchhcCC
Confidence 456667789999999999999875421 2222222224689999999999864
No 372
>PRK08118 topology modulation protein; Reviewed
Probab=97.50 E-value=8.8e-05 Score=53.19 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
||+|+|++|||||||...+...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998854
No 373
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.47 E-value=0.00061 Score=46.37 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=22.2
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCC
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTF 31 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~ 31 (175)
.-.+++.|++|+|||++++.+...-.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 44689999999999999999987543
No 374
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.47 E-value=0.00016 Score=51.07 Aligned_cols=52 Identities=21% Similarity=0.122 Sum_probs=35.9
Q ss_pred ccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 73 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 73 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
..++++|++++|.|++++..-.. ..+.+.+.....+.|+++|.||+|+.++.
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~--~~i~~~l~~~~~~~p~ilVlNKiDl~~~~ 55 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRC--KHVEEYLKKEKPHKHLIFVLNKCDLVPTW 55 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccC--HHHHHHHHhccCCCCEEEEEEchhcCCHH
Confidence 35689999999999998743221 23333443333468999999999996543
No 375
>PRK07261 topology modulation protein; Provisional
Probab=97.42 E-value=0.00013 Score=52.48 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
+|+|+|++|||||||...+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998743
No 376
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.42 E-value=0.00031 Score=54.99 Aligned_cols=119 Identities=14% Similarity=0.107 Sum_probs=69.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcC---CCCCCCCCC--ee-----------------eeeEEE--EEE----CCeEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSN---TFPTDYVPT--VF-----------------DNFSAN--VVV----DGSTVN 55 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~---~~~~~~~~t--~~-----------------~~~~~~--~~~----~~~~~~ 55 (175)
+..+||.++|--.=|||||...+.+- .++++.... +. ..+... ... ......
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 45899999999999999999998852 121110000 00 000000 000 012345
Q ss_pred EEEEeCCCcccccccccccccCccEEEEEEECCCh----hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccchh
Q 030525 56 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF 128 (175)
Q Consensus 56 ~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 128 (175)
+.|.|.||++..-..-.+--.-.|+.++|...+.+ ++-+++ .-++.+. -..+++|-||+||...++.
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl--~AleIig----ik~iiIvQNKIDlV~~E~A 158 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHL--MALEIIG----IKNIIIVQNKIDLVSRERA 158 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHH--HHHhhhc----cceEEEEecccceecHHHH
Confidence 78999999985322111223347899999998754 444444 1122222 3578999999999876543
No 377
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.40 E-value=0.00014 Score=52.72 Aligned_cols=23 Identities=13% Similarity=0.348 Sum_probs=21.1
Q ss_pred eEEEEECCCCCCHHHHHHHhhcC
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.||+|+|+|||||||+..++...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999976
No 378
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.40 E-value=0.00019 Score=53.15 Aligned_cols=29 Identities=21% Similarity=0.177 Sum_probs=25.1
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHhhcC
Q 030525 1 MSASRFIKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 1 m~~~~~~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
|...+...|.|.|++|||||||.+.+...
T Consensus 1 ~~~~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 1 MMMKKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 44578899999999999999999988853
No 379
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.39 E-value=0.00035 Score=55.78 Aligned_cols=116 Identities=19% Similarity=0.229 Sum_probs=70.3
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCCCCCCC------------------CCe-----e-eeeEEEEEE----------CC
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYV------------------PTV-----F-DNFSANVVV----------DG 51 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~------------------~t~-----~-~~~~~~~~~----------~~ 51 (175)
.+++.++|...+|||||+--|..+......- +.. + +...+-+.+ +.
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 5799999999999999997766543321100 000 0 000111111 11
Q ss_pred eEEEEEEEeCCCcccccccccccc--cCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 52 STVNLGLWDTAGQEDYNRLRPLSY--RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 52 ~~~~~~~~D~~G~~~~~~~~~~~~--~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
....+.++|.+|+.+|....-.-+ ...|...++.+.+..-.+... +-+..+... ++|+.++.+|.|+.+.
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTr--EHLgl~~AL--~iPfFvlvtK~Dl~~~ 318 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTR--EHLGLIAAL--NIPFFVLVTKMDLVDR 318 (591)
T ss_pred hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccH--HHHHHHHHh--CCCeEEEEEeeccccc
Confidence 234588999999988865432222 236777888888766444332 233333332 7999999999999876
No 380
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.39 E-value=0.00012 Score=50.64 Aligned_cols=20 Identities=15% Similarity=0.257 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHhhc
Q 030525 9 CVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 9 i~v~G~~~~GKTsli~~l~~ 28 (175)
|+++|++||||||++..+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999984
No 381
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.38 E-value=0.00039 Score=53.90 Aligned_cols=62 Identities=15% Similarity=0.119 Sum_probs=37.6
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 53 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
.+.+.|++|.|.-.... .-.+-+|.++++.-..-.+..+.+..-.+ .+.=++|.||.|....
T Consensus 143 G~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~Gim--------EiaDi~vINKaD~~~A 204 (323)
T COG1703 143 GYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIM--------EIADIIVINKADRKGA 204 (323)
T ss_pred CCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhh--------hhhheeeEeccChhhH
Confidence 45678888888543221 23455788887776654555554412122 2455899999997655
No 382
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=97.37 E-value=0.00015 Score=57.97 Aligned_cols=121 Identities=17% Similarity=0.118 Sum_probs=76.0
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCe----------------eeee-------EEEEEE----------
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV----------------FDNF-------SANVVV---------- 49 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~----------------~~~~-------~~~~~~---------- 49 (175)
.+..+.+.+.|.-..|||||+-.|..+...+..-.+. ...+ .+.+..
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 4567899999999999999998888665432211110 0000 001110
Q ss_pred ---CCeEEEEEEEeCCCcccccccccc--cccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcc
Q 030525 50 ---DGSTVNLGLWDTAGQEDYNRLRPL--SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (175)
Q Consensus 50 ---~~~~~~~~~~D~~G~~~~~~~~~~--~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 124 (175)
+.....+.+.|+.|++.|-....+ +=+..|-.+++..+++.-+.-.- +-+..+.. -+.|++++.+|+|+.+
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tk--EHLgi~~a--~~lPviVvvTK~D~~~ 269 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTK--EHLGIALA--MELPVIVVVTKIDMVP 269 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhh--Hhhhhhhh--hcCCEEEEEEecccCc
Confidence 111245789999999987553322 33678999999999877554332 22222222 3799999999999987
Q ss_pred cch
Q 030525 125 DKQ 127 (175)
Q Consensus 125 ~~~ 127 (175)
+..
T Consensus 270 ddr 272 (527)
T COG5258 270 DDR 272 (527)
T ss_pred HHH
Confidence 643
No 383
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.36 E-value=0.00041 Score=57.29 Aligned_cols=115 Identities=16% Similarity=0.181 Sum_probs=75.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCC--C----CC--CCCCeeeeeEEEEE-----------------------ECCe
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTF--P----TD--YVPTVFDNFSANVV-----------------------VDGS 52 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~--~----~~--~~~t~~~~~~~~~~-----------------------~~~~ 52 (175)
...-|+.|+..-.-|||||..+|....- + .. +.-|..+.....++ .++.
T Consensus 17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~ 96 (842)
T KOG0469|consen 17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN 96 (842)
T ss_pred cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence 3455788888889999999999984311 0 00 00000111110111 1344
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 030525 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL 122 (175)
Q Consensus 53 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 122 (175)
...++++|.||+.+|.+.....++-.|+.++|.|+-+.-..+.. ..+...+. +++.=+++.||.|.
T Consensus 97 ~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTE-TVLrQA~~---ERIkPvlv~NK~DR 162 (842)
T KOG0469|consen 97 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIA---ERIKPVLVMNKMDR 162 (842)
T ss_pred ceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechH-HHHHHHHH---hhccceEEeehhhH
Confidence 67899999999999999888899999999999999888666553 22323333 25566788999994
No 384
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.35 E-value=0.00023 Score=51.28 Aligned_cols=29 Identities=17% Similarity=0.132 Sum_probs=24.9
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHhhcC
Q 030525 1 MSASRFIKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 1 m~~~~~~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
|+.....-+.|+|++|||||||+.++...
T Consensus 1 ~~~~~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 1 MNKTMIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CCCCCceEEEEECCCCChHHHHHHHHHHH
Confidence 66666667899999999999999999864
No 385
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.35 E-value=0.0011 Score=53.70 Aligned_cols=111 Identities=21% Similarity=0.079 Sum_probs=72.2
Q ss_pred EEEEECCCCCCHHHHHHHhhcCCCC----CCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNTFP----TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
.|+-.|.---|||||+..+.+..-. .....++.+.-.... +-....+.++|.||++++-.....-+..+|..++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~--~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYR--KLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEec--cCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 3566777788999999999865331 111222222222222 2222378999999999876655566778999999
Q ss_pred EEECCCh---hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 84 AFSLISK---ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 84 v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
|++.++. ++-+.+ ..++.+. -...++|.||+|..++.
T Consensus 80 vV~~deGl~~qtgEhL--~iLdllg----i~~giivltk~D~~d~~ 119 (447)
T COG3276 80 VVAADEGLMAQTGEHL--LILDLLG----IKNGIIVLTKADRVDEA 119 (447)
T ss_pred EEeCccCcchhhHHHH--HHHHhcC----CCceEEEEeccccccHH
Confidence 9999744 455544 2333332 34569999999998754
No 386
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.33 E-value=0.00022 Score=52.08 Aligned_cols=23 Identities=9% Similarity=0.101 Sum_probs=20.6
Q ss_pred eEEEEECCCCCCHHHHHHHhhcC
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.=|+++|++|||||||+++++..
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 44899999999999999999864
No 387
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.33 E-value=0.00059 Score=57.12 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=19.2
Q ss_pred eEEEEECCCCCCHHHHHHHhhc
Q 030525 7 IKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~ 28 (175)
-.++++|++|+||||++..|..
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999988773
No 388
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.32 E-value=0.00071 Score=46.91 Aligned_cols=107 Identities=16% Similarity=0.048 Sum_probs=62.4
Q ss_pred EEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCC
Q 030525 10 VTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS 89 (175)
Q Consensus 10 ~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~ 89 (175)
+.-|.+|+|||++...+...--. ....+...+... ......+.+.++|+|+... ......+..+|.++++.+.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~-~~~~~~~vd~D~--~~~~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~- 77 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAK-LGKRVLLLDADL--GLANLDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPE- 77 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEECCC--CCCCCCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCC-
Confidence 35578999999997665532110 001111111000 0001116789999997532 22246788999999999876
Q ss_pred hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCc
Q 030525 90 KASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 123 (175)
Q Consensus 90 ~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 123 (175)
..++... ...++.+.+.....++.+|.|+.+-.
T Consensus 78 ~~s~~~~-~~~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 78 PTSITDA-YALIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred hhHHHHH-HHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence 4555554 34455554444466888999999754
No 389
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.30 E-value=0.00028 Score=52.25 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcC
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
+..-|+|+|++|||||||++.|...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4556889999999999999999754
No 390
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.27 E-value=0.00052 Score=49.28 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=30.4
Q ss_pred EEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~ 61 (175)
||++.|++|+||||++++++..--... -...--++..+..++...-|.+.|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~--~~v~Gf~t~evr~~g~r~GF~iv~l 52 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKG--LPVGGFYTEEVRENGRRIGFDIVDL 52 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTC--GGEEEEEEEEEETTSSEEEEEEEET
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccC--CccceEEeecccCCCceEEEEEEEC
Confidence 689999999999999999885321100 1112223333344555555666665
No 391
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.26 E-value=0.00033 Score=41.65 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHhhc
Q 030525 8 KCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~ 28 (175)
..+|.|++|+||||++..+..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999988774
No 392
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.24 E-value=0.0022 Score=40.65 Aligned_cols=69 Identities=23% Similarity=0.231 Sum_probs=44.1
Q ss_pred EEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCccccccc-ccccccCccEEEEEEEC
Q 030525 9 CVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-RPLSYRGADVFILAFSL 87 (175)
Q Consensus 9 i~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~-~~~~~~~~d~vi~v~d~ 87 (175)
+++.|..|+|||++...+...--...+ +....+ .+.++|+++....... .......+|.++++.+.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~---------~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~ 68 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGK---------RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP 68 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC---------eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence 678899999999999877743211111 111122 5789999987543221 13456788999999887
Q ss_pred CCh
Q 030525 88 ISK 90 (175)
Q Consensus 88 ~~~ 90 (175)
+..
T Consensus 69 ~~~ 71 (99)
T cd01983 69 EAL 71 (99)
T ss_pred chh
Confidence 643
No 393
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.23 E-value=0.00029 Score=52.25 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHhhcCCC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNTF 31 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~~ 31 (175)
.++|+|++|||||||+.++-.-+.
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcC
Confidence 589999999999999998876443
No 394
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.23 E-value=0.00018 Score=51.14 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999865
No 395
>PRK14530 adenylate kinase; Provisional
Probab=97.22 E-value=0.00037 Score=51.90 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHhhc
Q 030525 8 KCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~ 28 (175)
+|+|+|+|||||||+.+.+..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998874
No 396
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.22 E-value=0.00035 Score=42.48 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHhhcC
Q 030525 9 CVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 9 i~v~G~~~~GKTsli~~l~~~ 29 (175)
|++.|++|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999988864
No 397
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.21 E-value=0.00019 Score=50.56 Aligned_cols=52 Identities=17% Similarity=0.107 Sum_probs=35.3
Q ss_pred cccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 70 LRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 70 ~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
+.+..++++|++++|+|++++...... .+...+.. .+.|+++|+||+|+.+.
T Consensus 5 ~~~~i~~~aD~vl~V~D~~~~~~~~~~--~l~~~~~~--~~~p~iiv~NK~Dl~~~ 56 (156)
T cd01859 5 LVRRIIKESDVVLEVLDARDPELTRSR--KLERYVLE--LGKKLLIVLNKADLVPK 56 (156)
T ss_pred HHHHHHhhCCEEEEEeeCCCCcccCCH--HHHHHHHh--CCCcEEEEEEhHHhCCH
Confidence 344567789999999999876533321 23332322 36899999999998643
No 398
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.20 E-value=0.0015 Score=52.82 Aligned_cols=64 Identities=30% Similarity=0.321 Sum_probs=35.6
Q ss_pred EEEEEEEeCCCcccccccc----ccccc--CccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcE-EEEEeCCCCc
Q 030525 53 TVNLGLWDTAGQEDYNRLR----PLSYR--GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTKLDLR 123 (175)
Q Consensus 53 ~~~~~~~D~~G~~~~~~~~----~~~~~--~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~ 123 (175)
.+.+.++||.|...+.... ..++. ...-+-+|.+++... +.+ +..++.+. .+|+ -++.||.|-.
T Consensus 281 ~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dl-kei~~~f~----~~~i~~~I~TKlDET 351 (407)
T COG1419 281 DCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDL-KEIIKQFS----LFPIDGLIFTKLDET 351 (407)
T ss_pred cCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHH-HHHHHHhc----cCCcceeEEEccccc
Confidence 4578999999976543321 12222 233455566665332 333 44444444 3444 6888999954
No 399
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.17 E-value=0.00021 Score=51.65 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=21.7
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCC
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNT 30 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~ 30 (175)
-.=+++.||+||||||+++.|....
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3457899999999999999999765
No 400
>PRK06217 hypothetical protein; Validated
Probab=97.16 E-value=0.00039 Score=50.43 Aligned_cols=23 Identities=13% Similarity=0.237 Sum_probs=20.7
Q ss_pred eEEEEECCCCCCHHHHHHHhhcC
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.+|+|+|.+||||||+..+|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999854
No 401
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.16 E-value=0.00082 Score=52.34 Aligned_cols=101 Identities=18% Similarity=0.275 Sum_probs=59.1
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcc---cc---------------
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE---DY--------------- 67 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~---~~--------------- 67 (175)
.-+++++|++|.|||+++++|........ .+.. ..+.+.....|... ++
T Consensus 61 mp~lLivG~snnGKT~Ii~rF~~~hp~~~-d~~~------------~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~ 127 (302)
T PF05621_consen 61 MPNLLIVGDSNNGKTMIIERFRRLHPPQS-DEDA------------ERIPVVYVQMPPEPDERRFYSAILEALGAPYRPR 127 (302)
T ss_pred CCceEEecCCCCcHHHHHHHHHHHCCCCC-CCCC------------ccccEEEEecCCCCChHHHHHHHHHHhCcccCCC
Confidence 45799999999999999999997553321 1111 11233334433311 11
Q ss_pred ------cccccccccCccEEEEEEECCCh---hhHHHHHHHHHHHHhhcCC--CCcEEEEEeCC
Q 030525 68 ------NRLRPLSYRGADVFILAFSLISK---ASYENVAKKWIPELRHYAP--GVPIILVGTKL 120 (175)
Q Consensus 68 ------~~~~~~~~~~~d~vi~v~d~~~~---~s~~~~~~~~~~~~~~~~~--~~p~ilv~nK~ 120 (175)
.......++....=++++|--+. .+..+. +.+++.++..+. ++|++.||++-
T Consensus 128 ~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~q-r~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 128 DRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQ-REFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred CCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHH-HHHHHHHHHHhhccCCCeEEeccHH
Confidence 11112345667777888884322 233443 566666766653 79999999764
No 402
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.16 E-value=0.00035 Score=52.36 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
-++|+|++|||||||+|-+-.-
T Consensus 33 ~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999988753
No 403
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.16 E-value=0.00039 Score=52.62 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=22.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcC
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
+..++++|+|.+|||||+|+..++..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 46789999999999999999888753
No 404
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.15 E-value=0.0026 Score=48.57 Aligned_cols=93 Identities=17% Similarity=0.209 Sum_probs=62.5
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCC-CCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccc----c---ccccccCc
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR----L---RPLSYRGA 78 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~----~---~~~~~~~~ 78 (175)
.++-++|-|.+||||++..+.+... .+.+..++.......+.+.+ -++++.|.||.-+-.. - .-..-+.+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 4889999999999999999886533 34445554444444443443 5799999999532111 0 11235678
Q ss_pred cEEEEEEECCChhhHHHHHHHHH
Q 030525 79 DVFILAFSLISKASYENVAKKWI 101 (175)
Q Consensus 79 d~vi~v~d~~~~~s~~~~~~~~~ 101 (175)
+.+++|.|+-.+-+...+.+.-+
T Consensus 138 nli~~vld~~kp~~hk~~ie~el 160 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSHKKIIEKEL 160 (358)
T ss_pred cEEEEEeeccCcccHHHHHHHhh
Confidence 99999999998888876644333
No 405
>PRK12288 GTPase RsgA; Reviewed
Probab=97.15 E-value=0.00098 Score=53.31 Aligned_cols=48 Identities=19% Similarity=0.362 Sum_probs=40.2
Q ss_pred ccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 75 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
..++|.+++|++++...++..+ ..|+..+.. .++|.++|+||+||.+.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~L-dr~L~~a~~--~~i~~VIVlNK~DL~~~ 165 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNII-DRYLVACET--LGIEPLIVLNKIDLLDD 165 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHH-HHHHHHHHh--cCCCEEEEEECccCCCc
Confidence 3569999999999988899888 888776654 47999999999999753
No 406
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.14 E-value=0.00045 Score=46.55 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=22.3
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCC
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFP 32 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~ 32 (175)
-.++++|++|+|||+++..+...-..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 46899999999999999999876544
No 407
>PRK14527 adenylate kinase; Provisional
Probab=97.14 E-value=0.00051 Score=50.16 Aligned_cols=28 Identities=14% Similarity=0.173 Sum_probs=24.4
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHhhc
Q 030525 1 MSASRFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 1 m~~~~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
|+.+..--|+++|+|||||||+..++..
T Consensus 1 ~~~~~~~~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 1 MTQTKNKVVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 6666777899999999999999998874
No 408
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.14 E-value=0.00042 Score=51.09 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=21.3
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcC
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
+++|.++|++|+|||||++++...
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 478999999999999999988853
No 409
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.11 E-value=0.0004 Score=47.63 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHhhcCC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNT 30 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~ 30 (175)
.++|+|++|+|||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 68999999999999998887643
No 410
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.10 E-value=0.00044 Score=46.79 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHhhcCC
Q 030525 9 CVTVGDGAVGKTCMLISYTSNT 30 (175)
Q Consensus 9 i~v~G~~~~GKTsli~~l~~~~ 30 (175)
|++.|++|+|||++++.+...-
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999999999998753
No 411
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.10 E-value=0.00023 Score=57.23 Aligned_cols=55 Identities=25% Similarity=0.480 Sum_probs=41.2
Q ss_pred cccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcc
Q 030525 64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (175)
Q Consensus 64 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 124 (175)
.++|..+...+...++++++|+|+.+.. ..|.+.+.+...+.|+++|+||+|+.+
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~------~s~~~~l~~~~~~~piilV~NK~DLl~ 104 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE------GSLIPELKRFVGGNPVLLVGNKIDLLP 104 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC------CCccHHHHHHhCCCCEEEEEEchhhCC
Confidence 4567777778888999999999997653 234444444444789999999999864
No 412
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.08 E-value=0.00046 Score=49.71 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++|+|++||||||+++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
No 413
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.08 E-value=0.00097 Score=52.72 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
=.++.|.-|+|||||+++++..
T Consensus 6 v~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 3567899999999999999854
No 414
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.08 E-value=0.00053 Score=49.87 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|+|||||++.+...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999754
No 415
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.08 E-value=0.00051 Score=47.57 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHhhcC
Q 030525 9 CVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 9 i~v~G~~~~GKTsli~~l~~~ 29 (175)
|+|+|++|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 416
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.07 E-value=0.00062 Score=51.32 Aligned_cols=28 Identities=25% Similarity=0.239 Sum_probs=23.5
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHhhc
Q 030525 1 MSASRFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 1 m~~~~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
|.-....+|+|+|+|||||||+...+..
T Consensus 1 ~~~~~~mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 1 MKLKGPLKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred CCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3345568899999999999999998874
No 417
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.05 E-value=0.00046 Score=46.51 Aligned_cols=21 Identities=19% Similarity=0.113 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHhhcC
Q 030525 9 CVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 9 i~v~G~~~~GKTsli~~l~~~ 29 (175)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999888864
No 418
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.04 E-value=0.0067 Score=45.64 Aligned_cols=48 Identities=17% Similarity=0.117 Sum_probs=33.9
Q ss_pred ccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCc
Q 030525 73 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 123 (175)
Q Consensus 73 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 123 (175)
.-.+++|.+|+|.|.+ ..|+... +...+...... =.++.+|.||.|-.
T Consensus 151 g~~~~vD~vivVvDpS-~~sl~ta-eri~~L~~elg-~k~i~~V~NKv~e~ 198 (255)
T COG3640 151 GTIEGVDLVIVVVDPS-YKSLRTA-ERIKELAEELG-IKRIFVVLNKVDEE 198 (255)
T ss_pred ccccCCCEEEEEeCCc-HHHHHHH-HHHHHHHHHhC-CceEEEEEeeccch
Confidence 3457899999999987 4555555 44554444432 26899999999966
No 419
>PRK03839 putative kinase; Provisional
Probab=97.03 E-value=0.00058 Score=49.29 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
+|+++|.+||||||+..++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988753
No 420
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.97 E-value=0.0007 Score=48.71 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|||||||++.+...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4799999999999999999874
No 421
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.97 E-value=0.00068 Score=48.98 Aligned_cols=21 Identities=19% Similarity=0.112 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHhhc
Q 030525 8 KCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~ 28 (175)
.|+++|++||||||+++++..
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999984
No 422
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.96 E-value=0.0008 Score=48.67 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=19.0
Q ss_pred eEEEEECCCCCCHHHHHHHhh
Q 030525 7 IKCVTVGDGAVGKTCMLISYT 27 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~ 27 (175)
-.++++|++|+|||||++.+.
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 378999999999999999886
No 423
>PRK06547 hypothetical protein; Provisional
Probab=96.96 E-value=0.00087 Score=48.29 Aligned_cols=27 Identities=19% Similarity=0.275 Sum_probs=23.1
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcC
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
......|+|.|++||||||+.+.+...
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 356778999999999999999999754
No 424
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.94 E-value=0.00075 Score=51.02 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHhhc
Q 030525 9 CVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 9 i~v~G~~~~GKTsli~~l~~ 28 (175)
|.++|++|||||||++-+.+
T Consensus 32 vsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 78999999999999988885
No 425
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.94 E-value=0.00074 Score=51.60 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHhhc
Q 030525 8 KCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~ 28 (175)
-++|+|++|||||||++.+.+
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 368999999999999999885
No 426
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.93 E-value=0.00071 Score=46.63 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.|+++|++|+|||+|++.+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988853
No 427
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.93 E-value=0.0044 Score=40.42 Aligned_cols=82 Identities=13% Similarity=0.153 Sum_probs=48.5
Q ss_pred EEEEC-CCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 030525 9 CVTVG-DGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (175)
Q Consensus 9 i~v~G-~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~ 87 (175)
|++.| ..|+||||+...+...--. ...+....+ .+. .+.+.++|+|+..... ....+..+|.++++.+.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~vl~~d------~d~-~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~ 71 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRVLLID------LDP-QYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQP 71 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcEEEEe------CCC-CCCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccC
Confidence 56666 5699999998666532111 111111111 111 1668899999875322 22567889999999887
Q ss_pred CChhhHHHHHHHHHH
Q 030525 88 ISKASYENVAKKWIP 102 (175)
Q Consensus 88 ~~~~s~~~~~~~~~~ 102 (175)
+ ..+.+.. ..+++
T Consensus 72 ~-~~s~~~~-~~~~~ 84 (104)
T cd02042 72 S-PLDLDGL-EKLLE 84 (104)
T ss_pred C-HHHHHHH-HHHHH
Confidence 5 5566655 45544
No 428
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.91 E-value=0.00097 Score=49.36 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=22.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcC
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
+....|.++|..|+|||||+++++..
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 45778999999999999999999853
No 429
>PRK14532 adenylate kinase; Provisional
Probab=96.91 E-value=0.00089 Score=48.63 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHhhc
Q 030525 8 KCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~ 28 (175)
+|+++|+|||||||+..++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999975
No 430
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=96.91 E-value=0.0054 Score=48.60 Aligned_cols=21 Identities=33% Similarity=0.298 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHhhcC
Q 030525 9 CVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 9 i~v~G~~~~GKTsli~~l~~~ 29 (175)
.++-|-=|||||||+++++..
T Consensus 4 tvitGFLGsGKTTlL~~lL~~ 24 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLAN 24 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhc
Confidence 467889999999999999964
No 431
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=96.90 E-value=0.00065 Score=51.79 Aligned_cols=74 Identities=20% Similarity=0.277 Sum_probs=52.5
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEECCChh-------hHHHHH--HHHHHHHhhc--CCCCcEEEEEeCCC
Q 030525 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA-------SYENVA--KKWIPELRHY--APGVPIILVGTKLD 121 (175)
Q Consensus 53 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~-------s~~~~~--~~~~~~~~~~--~~~~p~ilv~nK~D 121 (175)
.++|+.+|.+||.+-+.-|-.++.+..++|+|..+++-. +-+.+. -.+++.+.+. ...+.+|+..||.|
T Consensus 201 kv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqD 280 (379)
T KOG0099|consen 201 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQD 280 (379)
T ss_pred ccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHH
Confidence 467999999999988888889999999999999986321 112220 1222333221 14689999999999
Q ss_pred Ccccc
Q 030525 122 LRDDK 126 (175)
Q Consensus 122 l~~~~ 126 (175)
+-.++
T Consensus 281 llaeK 285 (379)
T KOG0099|consen 281 LLAEK 285 (379)
T ss_pred HHHHH
Confidence 87654
No 432
>PRK08233 hypothetical protein; Provisional
Probab=96.90 E-value=0.001 Score=47.77 Aligned_cols=24 Identities=17% Similarity=0.012 Sum_probs=20.7
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcC
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
..-|+|.|.+|||||||.+++...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 366888999999999999999853
No 433
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.90 E-value=0.0011 Score=48.74 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=20.7
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcC
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.--|+++|++|||||||++.+...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 345899999999999999999864
No 434
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.90 E-value=0.00082 Score=49.26 Aligned_cols=21 Identities=19% Similarity=0.177 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHhhcC
Q 030525 9 CVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 9 i~v~G~~~~GKTsli~~l~~~ 29 (175)
|.|.|++|||||||++.+...
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998753
No 435
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.89 E-value=0.00092 Score=44.29 Aligned_cols=20 Identities=25% Similarity=0.479 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHhh
Q 030525 8 KCVTVGDGAVGKTCMLISYT 27 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~ 27 (175)
.++++|++|+|||||+..+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 58999999999999999876
No 436
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.89 E-value=0.0007 Score=47.11 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.|+|+|+.|+|||||+..+++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999864
No 437
>PRK13949 shikimate kinase; Provisional
Probab=96.89 E-value=0.00098 Score=47.84 Aligned_cols=21 Identities=24% Similarity=0.229 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHhhc
Q 030525 8 KCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~ 28 (175)
+|+++|++|+||||+...+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999988774
No 438
>PRK14531 adenylate kinase; Provisional
Probab=96.89 E-value=0.00099 Score=48.34 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=20.3
Q ss_pred eEEEEECCCCCCHHHHHHHhhcC
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.+|+++|+|||||||+..++...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988753
No 439
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=96.87 E-value=0.0074 Score=47.08 Aligned_cols=90 Identities=16% Similarity=0.212 Sum_probs=49.0
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCccccccccccccc--CccEEEE
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYR--GADVFIL 83 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~--~~d~vi~ 83 (175)
.-.|+|.|++||||||+++.+-...+ ..+++ .....+..+...... ..+.+.+
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l~~~g~---------------~~~d~----------~~~~L~~~l~~~~~~~~~~~~~av 60 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRALEDLGY---------------YCVDN----------LPPSLLPKLVELLAQSGGIRKVAV 60 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHcCC---------------eEECC----------cCHHHHHHHHHHHHhcCCCCCeEE
Confidence 34689999999999999999942221 01121 111111111111111 1355777
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCc
Q 030525 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 123 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 123 (175)
+.|..+...++.. ...+..+... +.++.+|.-+++..
T Consensus 61 ~iD~r~~~~~~~~-~~~~~~L~~~--g~~~~iI~L~a~~e 97 (288)
T PRK05416 61 VIDVRSRPFFDDL-PEALDELRER--GIDVRVLFLDASDE 97 (288)
T ss_pred EEccCchhhHHHH-HHHHHHHHHc--CCcEEEEEEECCHH
Confidence 7888766544444 5556666653 45555566666643
No 440
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.87 E-value=0.001 Score=48.43 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=21.0
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcC
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.-.++++|++|+||||+++.+++-
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 347999999999999999998864
No 441
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.87 E-value=0.00077 Score=45.70 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
-++|.|++|+|||++++++...
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQ 27 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999964
No 442
>PHA00729 NTP-binding motif containing protein
Probab=96.86 E-value=0.0011 Score=49.67 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=22.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcC
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
...+|+|.|+||+|||+|..++...
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999999998764
No 443
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.86 E-value=0.00087 Score=48.71 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
+|+|+|++||||||+...+...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
No 444
>PRK01889 GTPase RsgA; Reviewed
Probab=96.85 E-value=0.001 Score=53.44 Aligned_cols=56 Identities=18% Similarity=0.185 Sum_probs=0.0
Q ss_pred EEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEE----EEeCCC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLG----LWDTAG 63 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~----~~D~~G 63 (175)
+++++|.+|+|||||+|.+.+........-...............-..+. ++||||
T Consensus 197 ~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~DtpG 256 (356)
T PRK01889 197 TVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDTPG 256 (356)
T ss_pred EEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCCCeecCCCc
No 445
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.85 E-value=0.0029 Score=55.27 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHhhc
Q 030525 8 KCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~ 28 (175)
-++++|++||||||.+..+..
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 578999999999999988874
No 446
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.84 E-value=0.0014 Score=47.22 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=20.3
Q ss_pred eEEEEECCCCCCHHHHHHHhhcC
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
-+|+++|++|+||||+...+...
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHH
Confidence 36999999999999999998853
No 447
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.82 E-value=0.0011 Score=47.85 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHhhc
Q 030525 9 CVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 9 i~v~G~~~~GKTsli~~l~~ 28 (175)
|+++|+|||||||+..++..
T Consensus 2 i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999875
No 448
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.81 E-value=0.0012 Score=49.07 Aligned_cols=22 Identities=23% Similarity=0.225 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|+|||||++.+.+-
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 6799999999999999999864
No 449
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.81 E-value=0.0011 Score=48.83 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHhhcCC
Q 030525 9 CVTVGDGAVGKTCMLISYTSNT 30 (175)
Q Consensus 9 i~v~G~~~~GKTsli~~l~~~~ 30 (175)
|+|+|++||||||+++.++..-
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999887543
No 450
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.80 E-value=0.0015 Score=46.89 Aligned_cols=26 Identities=15% Similarity=0.020 Sum_probs=22.3
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhc
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
.+...-|++.|.+||||||+.+.+..
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~ 29 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYE 29 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 35667899999999999999988774
No 451
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.80 E-value=0.0048 Score=49.32 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=22.3
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCC
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNT 30 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~ 30 (175)
..+|+|.|++|||||||++.++..-
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHccc
Confidence 4689999999999999999998654
No 452
>PLN02200 adenylate kinase family protein
Probab=96.80 E-value=0.0016 Score=49.28 Aligned_cols=24 Identities=13% Similarity=0.051 Sum_probs=21.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
.+..|+|+|+|||||||+..++..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998874
No 453
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.79 E-value=0.00092 Score=47.97 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=16.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
..-.++|.|++|+|||+|++++..
T Consensus 23 ~~~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp ----EEE-B-TTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999998774
No 454
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=96.78 E-value=0.0051 Score=48.70 Aligned_cols=153 Identities=16% Similarity=0.094 Sum_probs=86.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhc----C------CCCCCC-CCCe---e-eeeEEEEEECCeEEEEEEEeCCCccccc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTS----N------TFPTDY-VPTV---F-DNFSANVVVDGSTVNLGLWDTAGQEDYN 68 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~----~------~~~~~~-~~t~---~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 68 (175)
...+||.-+|---=|||||--.+.. . +|.+-. .|.. + .....++.+.-.....-=.|+||+.+|-
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYI 131 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYI 131 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHH
Confidence 4577999999999999999876652 1 121110 1110 0 1111222222222334457999998875
Q ss_pred ccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccchhhc-----------c---CCC
Q 030525 69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFI-----------D---HPG 134 (175)
Q Consensus 69 ~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~-----------~---~~~ 134 (175)
..--.--...|+.|+|+..+|..--+.- +.++ ..++.+ =..+++..||.|+.++.+..+ + ...
T Consensus 132 KNMItGaaqMDGaILVVaatDG~MPQTr-EHlL-LArQVG-V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd 208 (449)
T KOG0460|consen 132 KNMITGAAQMDGAILVVAATDGPMPQTR-EHLL-LARQVG-VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGD 208 (449)
T ss_pred HHhhcCccccCceEEEEEcCCCCCcchH-HHHH-HHHHcC-CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence 5444455778999999999987544433 2222 223221 246789999999985432211 0 111
Q ss_pred C------ccccccchhccCcccHHHHhhhHh
Q 030525 135 A------VPITTAQVDYKHPVCVYYFALLFF 159 (175)
Q Consensus 135 ~------~~vs~~~~~~~~~~~~~~~~~~~~ 159 (175)
. ..+++-+++..++++.....++-.
T Consensus 209 ~~PvI~GSAL~ALeg~~peig~~aI~kLlda 239 (449)
T KOG0460|consen 209 NTPVIRGSALCALEGRQPEIGLEAIEKLLDA 239 (449)
T ss_pred CCCeeecchhhhhcCCCccccHHHHHHHHHH
Confidence 1 235556666667777666555444
No 455
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.78 E-value=0.0011 Score=49.18 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHhhc
Q 030525 8 KCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~ 28 (175)
||+|+|+|||||||+..++..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999874
No 456
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.78 E-value=0.0011 Score=49.72 Aligned_cols=20 Identities=25% Similarity=0.192 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHhhc
Q 030525 9 CVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 9 i~v~G~~~~GKTsli~~l~~ 28 (175)
|.|.|++|||||||++.+..
T Consensus 2 igI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHH
Confidence 67999999999999988875
No 457
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.77 E-value=0.0038 Score=49.67 Aligned_cols=26 Identities=15% Similarity=0.075 Sum_probs=22.6
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCC
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTF 31 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~ 31 (175)
..+|+|+|++|||||||++.++..-.
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCC
Confidence 56899999999999999999986543
No 458
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.77 E-value=0.0014 Score=48.72 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|+|||||++.+.+-
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999874
No 459
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.76 E-value=0.0013 Score=47.64 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHhhcCC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNT 30 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~ 30 (175)
.++++|++|+|||||++.+.+-.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 68899999999999999888643
No 460
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.76 E-value=0.0014 Score=48.30 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998864
No 461
>PLN02674 adenylate kinase
Probab=96.76 E-value=0.0015 Score=49.68 Aligned_cols=25 Identities=12% Similarity=0.044 Sum_probs=22.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
+...+|+++|+|||||+|+..++..
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~ 53 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKD 53 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999998875
No 462
>PRK02496 adk adenylate kinase; Provisional
Probab=96.75 E-value=0.0015 Score=47.27 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=20.0
Q ss_pred eEEEEECCCCCCHHHHHHHhhc
Q 030525 7 IKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~ 28 (175)
.+++|+|++||||||+...+..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998874
No 463
>PRK00625 shikimate kinase; Provisional
Probab=96.75 E-value=0.0014 Score=47.26 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHhhc
Q 030525 8 KCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~ 28 (175)
+|+++|.+||||||+...+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 464
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.75 E-value=0.0048 Score=42.55 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
-|++.|+.|+|||||++.+...
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999999965
No 465
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.74 E-value=0.0017 Score=48.86 Aligned_cols=25 Identities=16% Similarity=0.109 Sum_probs=22.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
.+.+-+.|.|++|+|||||++.+.+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678899999999999999998885
No 466
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.74 E-value=0.0015 Score=48.34 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|+|||||++.+.+-
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999864
No 467
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.74 E-value=0.0014 Score=47.77 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|+|||||++.+.+-
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999988764
No 468
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.74 E-value=0.0015 Score=48.05 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHhhcCC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNT 30 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~ 30 (175)
.+.|+|++|+|||||++.+.+-.
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
No 469
>PF05729 NACHT: NACHT domain
Probab=96.73 E-value=0.0013 Score=46.08 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHhhcC
Q 030525 9 CVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 9 i~v~G~~~~GKTsli~~l~~~ 29 (175)
++|.|++|+|||+++.++...
T Consensus 3 l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 789999999999999988853
No 470
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.72 E-value=0.0015 Score=49.16 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|+|||||++.+.+-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999864
No 471
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.71 E-value=0.0016 Score=48.20 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++|+|++|+|||||++.+.+-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999874
No 472
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.71 E-value=0.0014 Score=48.45 Aligned_cols=22 Identities=18% Similarity=0.222 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|+|||||++.+.+-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999864
No 473
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.71 E-value=0.0012 Score=46.15 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=21.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
..-||+|.|.||+|||||..++..
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHH
Confidence 356899999999999999999984
No 474
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.70 E-value=0.0016 Score=48.21 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999998864
No 475
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=0.0007 Score=51.50 Aligned_cols=87 Identities=14% Similarity=0.165 Sum_probs=52.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEEC--CeEEEEEEEeCCCccccccccccccc----C
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVD--GSTVNLGLWDTAGQEDYNRLRPLSYR----G 77 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~----~ 77 (175)
+...-|++.|+.+. |++|++.....-. ...|+..-.|+..-... +.+-..++|+.+|...-..+...-+. .
T Consensus 43 ~~E~~I~~~Gn~~~--tt~I~~~FdR~e~-~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~ 119 (363)
T KOG3929|consen 43 KFEFFIGSKGNGGK--TTIILRCFDRDEP-PKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLR 119 (363)
T ss_pred cceeEEEEecCCce--eEeehhhcCcccC-CCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchh
Confidence 44667888887765 8899888865432 22444444444322222 23345789999997654443322221 2
Q ss_pred ccEEEEEEECCChhhH
Q 030525 78 ADVFILAFSLISKASY 93 (175)
Q Consensus 78 ~d~vi~v~d~~~~~s~ 93 (175)
.-.+|++.|+++++.+
T Consensus 120 ~~slIL~LDls~p~~~ 135 (363)
T KOG3929|consen 120 TFSLILVLDLSKPNDL 135 (363)
T ss_pred hhhheeeeecCChHHH
Confidence 3467899999988755
No 476
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.69 E-value=0.0017 Score=48.16 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|+|||||++.+.+-
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999988764
No 477
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.69 E-value=0.0017 Score=48.39 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|+|||||++.+.+-
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998864
No 478
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.69 E-value=0.0017 Score=48.38 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998864
No 479
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.68 E-value=0.0017 Score=49.09 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|+|||||++.+.+-
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999988864
No 480
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.68 E-value=0.0015 Score=49.14 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHhhc
Q 030525 8 KCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~ 28 (175)
-|+|+|++|+|||||+..+-.
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999988876
No 481
>PF13479 AAA_24: AAA domain
Probab=96.68 E-value=0.0016 Score=48.50 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=20.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHh
Q 030525 5 RFIKCVTVGDGAVGKTCMLISY 26 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l 26 (175)
+.+|++|.|++|+||||++..+
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC
Confidence 5789999999999999999888
No 482
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.67 E-value=0.0018 Score=47.89 Aligned_cols=23 Identities=17% Similarity=0.095 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHhhcCC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNT 30 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~ 30 (175)
.++++|++|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998753
No 483
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.67 E-value=0.0022 Score=45.63 Aligned_cols=24 Identities=17% Similarity=0.026 Sum_probs=20.6
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcC
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
...|+++|++||||||+...+...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 348999999999999999888753
No 484
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.67 E-value=0.0013 Score=46.62 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHhhcC
Q 030525 9 CVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 9 i~v~G~~~~GKTsli~~l~~~ 29 (175)
|+++|++||||||+.+.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999988864
No 485
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.67 E-value=0.0017 Score=48.31 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999988764
No 486
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.67 E-value=0.0018 Score=47.91 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHhhcCC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNT 30 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~ 30 (175)
.++++|++|+|||||++.+.+-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998643
No 487
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.66 E-value=0.0017 Score=47.12 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHhhc
Q 030525 8 KCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~ 28 (175)
.+.|+|++|+|||||+|-+.+
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred EEEEECCCCccHHHHHHHHHh
Confidence 689999999999999998875
No 488
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.65 E-value=0.0016 Score=51.73 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHhhcC
Q 030525 9 CVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 9 i~v~G~~~~GKTsli~~l~~~ 29 (175)
++++||+|||||||++.+.+-
T Consensus 32 ~vllGPSGcGKSTlLr~IAGL 52 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGL 52 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999988853
No 489
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.65 E-value=0.0018 Score=48.16 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHhhcCC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNT 30 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~ 30 (175)
.++|+|++|+|||||++.+.+-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998753
No 490
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.65 E-value=0.002 Score=46.52 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.+.++|++|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999864
No 491
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.65 E-value=0.0018 Score=45.20 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHhhcCC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNT 30 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~ 30 (175)
.++++|++|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 57899999999999999987754
No 492
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.65 E-value=0.0019 Score=48.10 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHhhcCC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNT 30 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~ 30 (175)
.++++|++|+|||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998753
No 493
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.65 E-value=0.0019 Score=48.51 Aligned_cols=22 Identities=18% Similarity=0.151 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|+|||||++.+.+-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999864
No 494
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.64 E-value=0.0017 Score=49.49 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHhhc
Q 030525 8 KCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~ 28 (175)
-+.|+||+|+|||||+..+++
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999997
No 495
>PRK14528 adenylate kinase; Provisional
Probab=96.64 E-value=0.002 Score=46.98 Aligned_cols=22 Identities=14% Similarity=0.105 Sum_probs=19.7
Q ss_pred eEEEEECCCCCCHHHHHHHhhc
Q 030525 7 IKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~ 28 (175)
-+|+|+|+|||||||+.+.+..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~ 23 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCE 23 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998864
No 496
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.64 E-value=0.0018 Score=46.38 Aligned_cols=20 Identities=25% Similarity=0.214 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHhh
Q 030525 8 KCVTVGDGAVGKTCMLISYT 27 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~ 27 (175)
+|+|.|.||+||||+..+|-
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 79999999999999999988
No 497
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.64 E-value=0.0019 Score=48.52 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHhhcCC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNT 30 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~ 30 (175)
.++++|++|+|||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999998653
No 498
>PLN03025 replication factor C subunit; Provisional
Probab=96.63 E-value=0.0066 Score=47.95 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=20.6
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCC
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNT 30 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~ 30 (175)
-.+++.|++|+||||++..+...-
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 358999999999999999887654
No 499
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.63 E-value=0.0027 Score=46.46 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHhhcCC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNT 30 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~ 30 (175)
.++++|++|+|||||++.+.+-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
No 500
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.62 E-value=0.0019 Score=48.21 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHhhcCC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNT 30 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~ 30 (175)
.++++|++|+|||||++.+.+..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998743
Done!