Query 030525
Match_columns 175
No_of_seqs 147 out of 1509
Neff 9.4
Searched_HMMs 29240
Date Tue Mar 26 00:35:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030525.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030525hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 5.5E-33 1.9E-37 206.2 10.7 122 5-127 12-135 (216)
2 3t5g_A GTP-binding protein RHE 100.0 1.3E-28 4.3E-33 176.7 16.7 126 1-127 1-128 (181)
3 2j0v_A RAC-like GTP-binding pr 100.0 7.3E-29 2.5E-33 182.5 14.0 128 1-128 4-131 (212)
4 3bwd_D RAC-like GTP-binding pr 100.0 1.1E-29 3.6E-34 182.2 8.7 128 1-128 3-130 (182)
5 3c5c_A RAS-like protein 12; GD 100.0 1.9E-28 6.4E-33 177.4 14.9 123 3-127 18-144 (187)
6 3reg_A RHO-like small GTPase; 100.0 3.6E-28 1.2E-32 176.5 16.3 123 3-125 20-142 (194)
7 3q3j_B RHO-related GTP-binding 100.0 2.2E-28 7.7E-33 180.8 14.5 122 4-125 25-146 (214)
8 1m7b_A RND3/RHOE small GTP-bin 100.0 3.8E-28 1.3E-32 175.1 15.1 123 3-125 4-126 (184)
9 2atx_A Small GTP binding prote 100.0 4.8E-28 1.7E-32 175.7 15.3 123 4-126 16-138 (194)
10 3oes_A GTPase rhebl1; small GT 100.0 3.5E-28 1.2E-32 177.7 13.5 126 1-127 19-146 (201)
11 2q3h_A RAS homolog gene family 100.0 9.2E-28 3.1E-32 175.1 15.5 124 3-126 17-140 (201)
12 2iwr_A Centaurin gamma 1; ANK 100.0 7E-28 2.4E-32 172.3 13.5 116 1-123 2-121 (178)
13 1gwn_A RHO-related GTP-binding 100.0 1.2E-27 4E-32 175.9 14.8 122 4-125 26-147 (205)
14 3kkq_A RAS-related protein M-R 100.0 1.3E-27 4.5E-32 171.6 14.3 123 4-127 16-140 (183)
15 3tw8_B RAS-related protein RAB 100.0 5.9E-27 2E-31 167.4 17.2 124 3-127 6-130 (181)
16 1mh1_A RAC1; GTP-binding, GTPa 100.0 2.3E-27 7.9E-32 170.3 14.9 123 4-126 3-125 (186)
17 1c1y_A RAS-related protein RAP 100.0 1.4E-27 4.7E-32 168.6 13.4 122 5-127 2-125 (167)
18 2j1l_A RHO-related GTP-binding 100.0 1.8E-27 6.1E-32 175.8 14.0 124 4-127 32-155 (214)
19 3ihw_A Centg3; RAS, centaurin, 100.0 4.3E-27 1.5E-31 170.0 15.0 116 2-124 16-133 (184)
20 2fn4_A P23, RAS-related protei 99.9 3.7E-27 1.3E-31 168.4 14.4 123 4-127 7-131 (181)
21 2fu5_C RAS-related protein RAB 99.9 1.7E-27 5.7E-32 171.1 12.4 123 4-127 6-130 (183)
22 4gzl_A RAS-related C3 botulinu 99.9 2.5E-27 8.4E-32 173.8 13.4 124 4-127 28-151 (204)
23 1z08_A RAS-related protein RAB 99.9 4E-27 1.4E-31 166.8 14.0 124 3-127 3-128 (170)
24 2bcg_Y Protein YP2, GTP-bindin 99.9 1.1E-26 3.6E-31 170.2 16.5 124 3-127 5-130 (206)
25 2gco_A H9, RHO-related GTP-bin 99.9 6.7E-27 2.3E-31 170.9 15.4 123 4-126 23-145 (201)
26 1u8z_A RAS-related protein RAL 99.9 2.5E-27 8.6E-32 167.1 12.7 122 5-127 3-126 (168)
27 2hup_A RAS-related protein RAB 99.9 2E-27 6.8E-32 173.9 12.5 123 4-127 27-151 (201)
28 2ew1_A RAS-related protein RAB 99.9 4.3E-27 1.5E-31 172.5 14.3 123 4-127 24-148 (201)
29 2fv8_A H6, RHO-related GTP-bin 99.9 5.9E-27 2E-31 172.0 14.8 123 4-126 23-145 (207)
30 2atv_A RERG, RAS-like estrogen 99.9 2.4E-27 8.2E-32 172.5 12.6 125 1-127 23-149 (196)
31 1kao_A RAP2A; GTP-binding prot 99.9 4.9E-27 1.7E-31 165.5 13.7 122 5-127 2-125 (167)
32 1r2q_A RAS-related protein RAB 99.9 7E-27 2.4E-31 165.2 14.6 124 3-127 3-128 (170)
33 1z2a_A RAS-related protein RAB 99.9 5.7E-27 1.9E-31 165.6 14.1 123 4-127 3-126 (168)
34 1z0j_A RAB-22, RAS-related pro 99.9 1.6E-26 5.5E-31 163.5 16.1 124 3-127 3-128 (170)
35 2gf9_A RAS-related protein RAB 99.9 2.3E-26 7.9E-31 166.3 17.1 123 4-127 20-144 (189)
36 2efe_B Small GTP-binding prote 99.9 1.6E-26 5.5E-31 165.4 16.1 123 4-127 10-134 (181)
37 1z0f_A RAB14, member RAS oncog 99.9 9.1E-27 3.1E-31 166.1 14.6 124 3-127 12-137 (179)
38 2bov_A RAla, RAS-related prote 99.9 8.3E-27 2.8E-31 170.3 14.6 123 4-127 12-136 (206)
39 2a5j_A RAS-related protein RAB 99.9 9.8E-27 3.4E-31 168.6 14.8 123 4-127 19-143 (191)
40 4dsu_A GTPase KRAS, isoform 2B 99.9 1.3E-26 4.4E-31 166.8 15.3 120 4-124 2-123 (189)
41 3tkl_A RAS-related protein RAB 99.9 1.5E-26 5.2E-31 167.6 15.5 123 4-127 14-138 (196)
42 3cpj_B GTP-binding protein YPT 99.9 1.1E-26 3.8E-31 172.4 14.8 124 3-127 10-135 (223)
43 2nzj_A GTP-binding protein REM 99.9 1.3E-26 4.5E-31 164.9 14.4 123 4-127 2-128 (175)
44 1zbd_A Rabphilin-3A; G protein 99.9 2.1E-26 7.2E-31 168.1 15.8 124 3-127 5-130 (203)
45 3q72_A GTP-binding protein RAD 99.9 1.2E-26 4.2E-31 163.8 14.1 120 6-127 2-123 (166)
46 2a9k_A RAS-related protein RAL 99.9 6.8E-27 2.3E-31 167.9 12.9 123 4-127 16-140 (187)
47 2bme_A RAB4A, RAS-related prot 99.9 1.3E-26 4.4E-31 166.7 13.9 123 4-127 8-132 (186)
48 1ek0_A Protein (GTP-binding pr 99.9 2.6E-26 8.9E-31 162.3 15.1 120 5-125 2-123 (170)
49 1z06_A RAS-related protein RAB 99.9 1.8E-26 6.2E-31 166.8 14.4 123 4-127 18-144 (189)
50 2g6b_A RAS-related protein RAB 99.9 4E-26 1.4E-30 163.2 16.0 124 3-127 7-133 (180)
51 3q85_A GTP-binding protein REM 99.9 1.7E-26 5.8E-31 163.5 13.5 121 6-127 2-126 (169)
52 2fg5_A RAB-22B, RAS-related pr 99.9 1.9E-26 6.4E-31 167.3 14.0 123 4-127 21-145 (192)
53 2erx_A GTP-binding protein DI- 99.9 1E-26 3.4E-31 164.7 12.2 122 5-127 2-126 (172)
54 2oil_A CATX-8, RAS-related pro 99.9 3.3E-26 1.1E-30 165.8 15.0 124 3-127 22-147 (193)
55 2il1_A RAB12; G-protein, GDP, 99.9 9.1E-27 3.1E-31 169.1 11.8 123 4-127 24-148 (192)
56 2y8e_A RAB-protein 6, GH09086P 99.9 2.1E-26 7.1E-31 164.2 13.4 122 5-127 13-136 (179)
57 2yc2_C IFT27, small RAB-relate 99.9 3E-27 1E-31 172.7 9.1 122 2-124 16-146 (208)
58 1wms_A RAB-9, RAB9, RAS-relate 99.9 5E-26 1.7E-30 162.3 15.0 120 3-123 4-129 (177)
59 3cbq_A GTP-binding protein REM 99.9 9.2E-27 3.1E-31 169.8 11.3 123 4-127 21-147 (195)
60 2o52_A RAS-related protein RAB 99.9 1.2E-26 4.2E-31 169.5 12.0 124 3-127 22-147 (200)
61 2hxs_A RAB-26, RAS-related pro 99.9 5.7E-27 1.9E-31 167.3 9.9 124 3-127 3-132 (178)
62 1g16_A RAS-related protein SEC 99.9 3.1E-26 1.1E-30 162.1 13.3 118 5-123 2-121 (170)
63 2g3y_A GTP-binding protein GEM 99.9 4.1E-26 1.4E-30 168.7 14.3 123 4-127 35-162 (211)
64 1ky3_A GTP-binding protein YPT 99.9 2.8E-26 9.6E-31 164.0 13.0 122 3-125 5-133 (182)
65 3clv_A RAB5 protein, putative; 99.9 5.9E-26 2E-30 164.9 14.7 120 1-122 2-159 (208)
66 3con_A GTPase NRAS; structural 99.9 1.1E-25 3.9E-30 162.5 16.0 119 5-124 20-140 (190)
67 3bc1_A RAS-related protein RAB 99.9 8E-26 2.7E-30 163.1 14.4 123 4-127 9-144 (195)
68 2ce2_X GTPase HRAS; signaling 99.9 6.9E-26 2.3E-30 159.2 13.6 119 5-124 2-122 (166)
69 1vg8_A RAS-related protein RAB 99.9 1.1E-25 3.7E-30 164.6 14.9 120 4-124 6-131 (207)
70 2p5s_A RAS and EF-hand domain 99.9 3E-26 1E-30 167.1 11.5 122 3-125 25-148 (199)
71 1x3s_A RAS-related protein RAB 99.9 1.7E-25 5.9E-30 161.8 15.5 119 5-124 14-135 (195)
72 3dz8_A RAS-related protein RAB 99.9 4.6E-27 1.6E-31 170.3 6.6 123 4-127 21-145 (191)
73 3gj0_A GTP-binding nuclear pro 99.9 3.1E-26 1.1E-30 169.6 10.9 122 4-126 13-135 (221)
74 3l0i_B RAS-related protein RAB 99.9 1.2E-26 4.1E-31 169.3 7.9 123 4-127 31-155 (199)
75 2gf0_A GTP-binding protein DI- 99.9 6.1E-26 2.1E-30 164.8 11.6 121 3-124 5-128 (199)
76 2f7s_A C25KG, RAS-related prot 99.9 3.7E-26 1.3E-30 168.5 10.0 124 3-127 22-158 (217)
77 4bas_A ADP-ribosylation factor 99.9 1.5E-25 5.1E-30 162.7 12.4 118 4-125 15-142 (199)
78 3cph_A RAS-related protein SEC 99.9 4.9E-25 1.7E-29 161.7 15.2 119 4-123 18-138 (213)
79 3th5_A RAS-related C3 botulinu 99.9 7.5E-28 2.6E-32 176.2 0.0 123 4-126 28-150 (204)
80 2cjw_A GTP-binding protein GEM 99.9 4.7E-25 1.6E-29 160.3 14.5 123 4-127 4-131 (192)
81 1zd9_A ADP-ribosylation factor 99.9 1.6E-25 5.5E-30 161.9 11.7 118 4-125 20-139 (188)
82 1ksh_A ARF-like protein 2; sma 99.9 1E-24 3.6E-29 156.9 14.8 118 4-126 16-135 (186)
83 1m2o_B GTP-binding protein SAR 99.9 1.4E-24 4.9E-29 157.4 15.5 116 4-124 21-138 (190)
84 3t1o_A Gliding protein MGLA; G 99.9 7.8E-26 2.7E-30 163.7 8.8 121 3-125 11-150 (198)
85 1f6b_A SAR1; gtpases, N-termin 99.9 5.7E-25 1.9E-29 160.6 13.1 116 4-124 23-140 (198)
86 2wkq_A NPH1-1, RAS-related C3 99.9 9E-25 3.1E-29 170.3 14.4 122 4-125 153-274 (332)
87 2h57_A ADP-ribosylation factor 99.9 1.2E-24 4.2E-29 157.3 13.9 118 4-125 19-141 (190)
88 1zj6_A ADP-ribosylation factor 99.9 5.8E-25 2E-29 158.6 11.6 117 4-125 14-132 (187)
89 4djt_A GTP-binding nuclear pro 99.9 3.4E-25 1.2E-29 163.4 10.5 123 4-127 9-134 (218)
90 1r8s_A ADP-ribosylation factor 99.9 3.9E-25 1.3E-29 155.8 10.1 114 7-125 1-116 (164)
91 1upt_A ARL1, ADP-ribosylation 99.9 3.1E-24 1E-28 152.0 14.4 117 4-125 5-123 (171)
92 2h17_A ADP-ribosylation factor 99.9 9.6E-25 3.3E-29 156.8 11.9 117 4-125 19-137 (181)
93 2zej_A Dardarin, leucine-rich 99.9 1.3E-25 4.5E-30 161.9 7.4 121 6-127 2-129 (184)
94 1fzq_A ADP-ribosylation factor 99.9 1.1E-24 3.7E-29 156.8 10.4 118 4-126 14-133 (181)
95 2b6h_A ADP-ribosylation factor 99.9 1.7E-24 6E-29 157.2 11.5 118 3-125 26-145 (192)
96 1moz_A ARL1, ADP-ribosylation 99.9 2E-24 6.7E-29 154.9 11.0 117 4-125 16-134 (183)
97 2x77_A ADP-ribosylation factor 99.9 4.5E-24 1.5E-28 154.1 12.6 117 4-125 20-138 (189)
98 2fh5_B SR-beta, signal recogni 99.9 2.5E-24 8.5E-29 158.4 11.2 122 3-126 4-131 (214)
99 3llu_A RAS-related GTP-binding 99.9 1.2E-24 4.1E-29 158.3 9.3 118 4-125 18-144 (196)
100 2f9l_A RAB11B, member RAS onco 99.9 2.6E-23 9E-28 151.6 15.8 123 4-127 3-127 (199)
101 3r7w_A Gtpase1, GTP-binding pr 99.9 5.9E-24 2E-28 165.2 11.0 117 5-124 2-129 (307)
102 1oix_A RAS-related protein RAB 99.9 1.2E-22 4.2E-27 147.3 15.1 123 4-127 27-151 (191)
103 3r7w_B Gtpase2, GTP-binding pr 99.9 7.5E-24 2.6E-28 164.9 8.1 113 8-125 1-121 (331)
104 2lkc_A Translation initiation 99.9 3.2E-22 1.1E-26 142.5 13.1 117 3-125 5-122 (178)
105 3o47_A ADP-ribosylation factor 99.9 1.1E-22 3.9E-27 159.4 10.4 119 4-126 163-282 (329)
106 3c5h_A Glucocorticoid receptor 99.9 2.3E-23 7.8E-28 157.9 5.0 123 4-127 17-215 (255)
107 2ged_A SR-beta, signal recogni 99.9 1E-22 3.6E-27 147.2 7.6 115 4-127 46-173 (193)
108 3lvq_E ARF-GAP with SH3 domain 99.9 1.2E-21 4.1E-26 161.1 13.9 117 4-125 320-438 (497)
109 1nrj_B SR-beta, signal recogni 99.9 1.3E-22 4.3E-27 149.6 6.8 115 4-127 10-137 (218)
110 2gj8_A MNME, tRNA modification 99.9 4.2E-22 1.4E-26 142.2 8.8 116 5-124 3-129 (172)
111 2qu8_A Putative nucleolar GTP- 99.9 2.9E-22 9.8E-27 149.1 6.7 122 4-127 27-159 (228)
112 2wji_A Ferrous iron transport 99.9 3.6E-21 1.2E-25 136.3 11.3 114 6-127 3-125 (165)
113 2dyk_A GTP-binding protein; GT 99.9 4.7E-21 1.6E-25 134.2 11.4 114 7-126 2-124 (161)
114 3dpu_A RAB family protein; roc 99.9 1E-21 3.6E-26 162.9 9.0 122 2-127 37-167 (535)
115 1svi_A GTP-binding protein YSX 99.8 1.3E-21 4.3E-26 141.6 6.8 118 3-127 20-151 (195)
116 1wf3_A GTP-binding protein; GT 99.8 1.9E-20 6.6E-25 145.1 10.6 120 4-127 5-134 (301)
117 2wjg_A FEOB, ferrous iron tran 99.8 1.9E-20 6.6E-25 134.6 9.0 116 4-127 5-129 (188)
118 2cxx_A Probable GTP-binding pr 99.8 2.2E-21 7.6E-26 139.5 3.6 115 7-126 2-138 (190)
119 3iev_A GTP-binding protein ERA 99.8 4.3E-20 1.5E-24 143.5 10.0 118 2-123 6-135 (308)
120 3def_A T7I23.11 protein; chlor 99.8 9.1E-20 3.1E-24 138.6 10.4 119 4-125 34-166 (262)
121 3gee_A MNME, tRNA modification 99.8 1.1E-19 3.7E-24 148.6 10.6 119 5-127 232-360 (476)
122 3a1s_A Iron(II) transport prot 99.8 2.7E-19 9.1E-24 135.8 11.5 116 4-127 3-127 (258)
123 3pqc_A Probable GTP-binding pr 99.8 1.3E-19 4.5E-24 130.6 7.6 116 3-126 20-149 (195)
124 3iby_A Ferrous iron transport 99.8 1.3E-19 4.5E-24 137.4 7.3 113 7-127 2-127 (256)
125 2hjg_A GTP-binding protein ENG 99.8 9E-20 3.1E-24 147.8 5.7 118 4-127 173-303 (436)
126 3b1v_A Ferrous iron uptake tra 99.8 1.6E-19 5.3E-24 138.1 6.4 113 5-126 2-123 (272)
127 4dhe_A Probable GTP-binding pr 99.8 9.8E-20 3.4E-24 134.4 5.0 118 4-127 27-161 (223)
128 1h65_A Chloroplast outer envel 99.8 6.5E-19 2.2E-23 134.3 9.0 119 5-126 38-170 (270)
129 3i8s_A Ferrous iron transport 99.8 4.1E-19 1.4E-23 135.9 7.8 115 5-127 2-129 (274)
130 1mky_A Probable GTP-binding pr 99.8 1.9E-18 6.6E-23 140.1 11.1 113 7-125 2-125 (439)
131 3lxx_A GTPase IMAP family memb 99.8 1.8E-18 6.2E-23 129.5 9.7 119 4-127 27-162 (239)
132 3k53_A Ferrous iron transport 99.8 1.5E-18 5.2E-23 132.4 9.0 116 5-127 2-126 (271)
133 2xtp_A GTPase IMAP family memb 99.8 1.2E-17 4E-22 126.4 12.6 119 5-125 21-154 (260)
134 3lxw_A GTPase IMAP family memb 99.7 2.5E-18 8.5E-23 129.7 8.3 117 4-125 19-154 (247)
135 3qq5_A Small GTP-binding prote 99.7 1.7E-18 5.8E-23 139.6 7.0 117 4-127 32-157 (423)
136 1xzp_A Probable tRNA modificat 99.7 1.7E-18 5.8E-23 141.7 7.0 112 6-125 243-365 (482)
137 2e87_A Hypothetical protein PH 99.7 4E-17 1.4E-21 129.2 14.5 121 4-127 165-297 (357)
138 4dcu_A GTP-binding protein ENG 99.7 1.8E-18 6.1E-23 140.9 6.2 117 4-126 193-322 (456)
139 3geh_A MNME, tRNA modification 99.7 4E-18 1.4E-22 138.9 8.2 116 5-128 223-348 (462)
140 2hjg_A GTP-binding protein ENG 99.7 1.5E-18 5.1E-23 140.7 5.3 114 7-126 4-127 (436)
141 1lnz_A SPO0B-associated GTP-bi 99.7 2.5E-18 8.6E-23 135.2 6.4 118 7-126 159-290 (342)
142 3izy_P Translation initiation 99.7 2.7E-19 9.1E-24 147.8 -1.1 117 4-125 2-119 (537)
143 3sjy_A Translation initiation 99.7 5.2E-17 1.8E-21 130.4 12.0 122 2-126 4-145 (403)
144 2ywe_A GTP-binding protein LEP 99.7 4.3E-17 1.5E-21 136.2 11.7 122 1-126 1-141 (600)
145 2xtz_A Guanine nucleotide-bind 99.7 1.5E-17 5.2E-22 131.3 7.3 75 52-127 181-267 (354)
146 2qag_A Septin-2, protein NEDD5 99.7 9.7E-18 3.3E-22 132.9 6.1 120 5-127 36-191 (361)
147 4fid_A G protein alpha subunit 99.7 1.7E-17 5.9E-22 129.9 7.3 75 52-127 159-245 (340)
148 2qtf_A Protein HFLX, GTP-bindi 99.7 7.8E-17 2.7E-21 127.7 11.2 115 7-125 179-307 (364)
149 3t5d_A Septin-7; GTP-binding p 99.7 2E-17 6.7E-22 126.4 7.4 119 3-125 5-159 (274)
150 1mky_A Probable GTP-binding pr 99.7 6.4E-17 2.2E-21 131.2 10.3 116 5-126 179-308 (439)
151 1ega_A Protein (GTP-binding pr 99.7 7.2E-17 2.4E-21 125.0 9.6 114 4-124 6-130 (301)
152 3ohm_A Guanine nucleotide-bind 99.7 1.8E-16 6.2E-21 123.7 11.7 73 53-126 166-250 (327)
153 3cb4_D GTP-binding protein LEP 99.7 3.1E-17 1.1E-21 137.2 7.8 118 4-125 2-138 (599)
154 4dcu_A GTP-binding protein ENG 99.7 9.8E-18 3.3E-22 136.6 4.4 115 6-126 23-147 (456)
155 1s0u_A EIF-2-gamma, translatio 99.7 4.3E-16 1.5E-20 125.2 12.9 120 1-126 3-151 (408)
156 3p26_A Elongation factor 1 alp 99.7 4.1E-17 1.4E-21 133.8 6.8 118 4-124 31-185 (483)
157 1jny_A EF-1-alpha, elongation 99.7 1.5E-17 5.1E-22 134.8 3.9 119 1-124 1-158 (435)
158 3tr5_A RF-3, peptide chain rel 99.7 1.1E-17 3.8E-22 138.3 2.8 115 5-125 12-149 (528)
159 2c78_A Elongation factor TU-A; 99.7 1.1E-16 3.6E-21 128.7 7.8 116 3-124 8-142 (405)
160 1g7s_A Translation initiation 99.7 1.3E-16 4.5E-21 133.4 8.7 114 4-124 3-136 (594)
161 1cip_A Protein (guanine nucleo 99.7 4.9E-16 1.7E-20 122.6 11.1 73 53-126 192-276 (353)
162 1zo1_I IF2, translation initia 99.7 2.2E-17 7.4E-22 135.4 3.3 113 4-125 2-118 (501)
163 1n0u_A EF-2, elongation factor 99.7 1.6E-16 5.4E-21 137.7 8.7 118 3-124 16-164 (842)
164 3j2k_7 ERF3, eukaryotic polype 99.7 5.6E-16 1.9E-20 125.7 11.2 116 4-124 15-169 (439)
165 1zun_B Sulfate adenylate trans 99.7 5.3E-16 1.8E-20 125.7 10.5 117 4-124 22-171 (434)
166 1r5b_A Eukaryotic peptide chai 99.6 9.6E-17 3.3E-21 131.1 6.0 117 3-124 40-195 (467)
167 3izq_1 HBS1P, elongation facto 99.6 8.2E-16 2.8E-20 129.2 11.2 117 4-124 165-319 (611)
168 2aka_B Dynamin-1; fusion prote 99.6 2.3E-16 8E-21 121.3 7.3 119 5-126 25-208 (299)
169 2h5e_A Peptide chain release f 99.6 2.8E-16 9.4E-21 130.0 7.6 118 5-126 12-150 (529)
170 1kk1_A EIF2gamma; initiation o 99.6 1.7E-15 5.7E-20 121.9 11.7 118 3-126 7-153 (410)
171 1wb1_A Translation elongation 99.6 6.4E-16 2.2E-20 126.6 8.5 113 4-125 17-140 (482)
172 2xex_A Elongation factor G; GT 99.6 1.7E-15 5.7E-20 129.0 11.4 116 4-125 8-142 (693)
173 1d2e_A Elongation factor TU (E 99.6 4E-16 1.4E-20 125.0 7.1 114 5-124 2-133 (397)
174 1dar_A EF-G, elongation factor 99.6 1.1E-15 3.8E-20 130.0 9.8 116 4-126 10-145 (691)
175 1f60_A Elongation factor EEF1A 99.6 1.2E-15 4E-20 124.4 9.5 119 1-124 1-159 (458)
176 2qpt_A EH domain-containing pr 99.6 2.2E-16 7.6E-21 131.2 4.9 118 5-127 64-235 (550)
177 1jwy_B Dynamin A GTPase domain 99.6 4.6E-16 1.6E-20 120.6 6.0 70 54-126 131-214 (315)
178 2rdo_7 EF-G, elongation factor 99.6 4E-15 1.4E-19 126.8 12.3 117 4-125 8-149 (704)
179 2j69_A Bacterial dynamin-like 99.6 1.5E-15 5.1E-20 129.3 9.1 119 5-126 68-246 (695)
180 3t34_A Dynamin-related protein 99.6 2.3E-15 7.9E-20 119.1 7.6 117 6-126 34-219 (360)
181 1wxq_A GTP-binding protein; st 99.6 7.5E-15 2.6E-19 117.6 9.7 84 7-90 1-114 (397)
182 1pui_A ENGB, probable GTP-bind 99.6 3.9E-15 1.3E-19 108.6 7.0 116 3-125 23-152 (210)
183 2elf_A Protein translation elo 99.6 2.7E-15 9.1E-20 119.2 5.5 103 8-125 23-127 (370)
184 3avx_A Elongation factor TS, e 99.5 3.9E-15 1.4E-19 130.9 6.1 117 4-124 294-426 (1289)
185 3mca_A HBS1, elongation factor 99.5 1.4E-15 4.9E-20 127.3 3.0 112 4-124 175-329 (592)
186 2qag_C Septin-7; cell cycle, c 99.5 4.2E-14 1.4E-18 113.8 10.2 120 5-127 30-184 (418)
187 2dy1_A Elongation factor G; tr 99.5 1.8E-14 6E-19 122.3 7.8 116 4-123 7-139 (665)
188 1azs_C GS-alpha; complex (lyas 99.5 5.9E-14 2E-18 112.2 10.3 79 46-127 211-301 (402)
189 1u0l_A Probable GTPase ENGC; p 99.5 4.2E-15 1.4E-19 115.0 1.9 99 21-127 32-132 (301)
190 1jal_A YCHF protein; nucleotid 99.5 2.4E-13 8.2E-18 107.3 10.4 83 7-89 3-108 (363)
191 2x2e_A Dynamin-1; nitration, h 99.5 7E-14 2.4E-18 110.3 6.5 119 5-126 30-213 (353)
192 1zcb_A G alpha I/13; GTP-bindi 99.4 4E-13 1.4E-17 106.3 9.4 73 53-126 200-284 (362)
193 2qnr_A Septin-2, protein NEDD5 99.4 6E-14 2E-18 108.5 3.0 119 5-127 17-172 (301)
194 1udx_A The GTP-binding protein 99.4 8.8E-13 3E-17 106.0 9.7 115 8-125 159-284 (416)
195 4a9a_A Ribosome-interacting GT 99.4 2E-12 6.7E-17 102.6 10.3 114 6-124 72-196 (376)
196 3vqt_A RF-3, peptide chain rel 99.4 1.2E-12 4.2E-17 108.7 7.8 116 5-126 30-168 (548)
197 2dby_A GTP-binding protein; GD 99.3 1.5E-11 5E-16 97.5 10.4 83 7-89 2-111 (368)
198 2ohf_A Protein OLA1, GTP-bindi 99.3 2E-12 6.8E-17 103.1 4.9 89 5-93 21-132 (396)
199 4fn5_A EF-G 1, elongation fact 99.3 2.2E-11 7.7E-16 104.0 10.7 117 5-125 12-152 (709)
200 3j25_A Tetracycline resistance 99.2 3.5E-12 1.2E-16 107.8 0.1 117 6-126 2-135 (638)
201 3zvr_A Dynamin-1; hydrolase, D 99.1 3.1E-10 1E-14 97.1 10.5 117 6-126 51-233 (772)
202 3p32_A Probable GTPase RV1496/ 99.1 8.6E-12 2.9E-16 98.5 0.8 61 54-125 172-232 (355)
203 2www_A Methylmalonic aciduria 99.1 9E-12 3.1E-16 98.2 -1.1 61 54-125 167-227 (349)
204 2wsm_A Hydrogenase expression/ 99.0 1.2E-10 4.1E-15 85.4 4.1 110 5-125 29-169 (221)
205 2hf9_A Probable hydrogenase ni 99.0 9.8E-13 3.4E-17 97.0 -7.6 36 5-40 37-72 (226)
206 2p67_A LAO/AO transport system 99.0 3.5E-11 1.2E-15 94.5 -1.4 62 53-125 148-209 (341)
207 1yrb_A ATP(GTP)binding protein 98.9 8.7E-10 3E-14 82.9 5.5 70 54-126 109-187 (262)
208 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 4.6E-09 1.6E-13 83.8 7.7 85 5-89 19-127 (392)
209 2qag_B Septin-6, protein NEDD5 98.8 6.2E-08 2.1E-12 77.9 10.9 115 6-125 42-191 (427)
210 3sop_A Neuronal-specific septi 98.8 1.6E-08 5.5E-13 76.9 6.8 115 6-125 2-155 (270)
211 2yv5_A YJEQ protein; hydrolase 98.7 2.3E-08 7.8E-13 77.2 6.5 60 64-126 66-126 (302)
212 3ec1_A YQEH GTPase; atnos1, at 98.6 7.1E-09 2.4E-13 82.2 2.0 111 7-126 163-290 (369)
213 2qm8_A GTPase/ATPase; G protei 98.6 4E-09 1.4E-13 82.6 -1.4 60 53-123 147-206 (337)
214 3h2y_A GTPase family protein; 98.6 7.3E-09 2.5E-13 82.1 0.1 112 7-127 161-290 (368)
215 1puj_A YLQF, conserved hypothe 98.5 9E-08 3.1E-12 73.2 4.9 57 4-65 118-176 (282)
216 3cnl_A YLQF, putative uncharac 98.5 5.4E-08 1.9E-12 73.6 2.8 56 7-66 100-156 (262)
217 3l82_B F-box only protein 4; T 98.3 1.4E-07 4.7E-12 68.9 2.0 63 62-125 110-178 (227)
218 2j37_W Signal recognition part 98.3 3E-07 1E-11 75.5 4.3 115 4-125 99-255 (504)
219 1f5n_A Interferon-induced guan 98.3 4.8E-07 1.6E-11 75.6 4.7 63 4-66 36-103 (592)
220 1tq4_A IIGP1, interferon-induc 98.1 1.3E-05 4.4E-10 64.3 8.0 112 6-123 69-188 (413)
221 3l2o_B F-box only protein 4; s 98.0 1.8E-06 6.1E-11 65.9 2.0 65 61-125 194-263 (312)
222 1bif_A 6-phosphofructo-2-kinas 98.0 1.2E-07 4E-12 77.4 -5.3 112 5-121 38-160 (469)
223 3szr_A Interferon-induced GTP- 97.9 6.8E-06 2.3E-10 69.1 4.4 23 8-30 47-69 (608)
224 2v3c_C SRP54, signal recogniti 97.8 1.9E-05 6.4E-10 63.8 4.8 111 6-124 99-252 (432)
225 3dm5_A SRP54, signal recogniti 97.7 4.8E-05 1.6E-09 61.5 5.8 115 5-125 99-254 (443)
226 3h2y_A GTPase family protein; 97.6 1E-05 3.4E-10 64.0 0.6 57 63-125 55-111 (368)
227 3asz_A Uridine kinase; cytidin 97.4 6.5E-05 2.2E-09 54.2 2.9 28 1-28 1-28 (211)
228 1ye8_A Protein THEP1, hypothet 97.4 8.2E-05 2.8E-09 52.8 3.2 22 8-29 2-23 (178)
229 1kgd_A CASK, peripheral plasma 97.4 8.1E-05 2.8E-09 52.7 3.0 22 8-29 7-28 (180)
230 3q5d_A Atlastin-1; G protein, 97.4 0.00015 5.2E-09 58.7 4.9 24 5-28 66-89 (447)
231 3ec1_A YQEH GTPase; atnos1, at 97.4 2E-05 6.9E-10 62.3 -0.6 57 63-125 57-113 (369)
232 2j41_A Guanylate kinase; GMP, 97.4 0.00011 3.8E-09 52.6 3.4 30 1-30 1-30 (207)
233 1lvg_A Guanylate kinase, GMP k 97.3 0.0001 3.6E-09 53.0 3.0 22 7-28 5-26 (198)
234 4eun_A Thermoresistant glucoki 97.3 0.00013 4.4E-09 52.4 3.3 26 3-28 26-51 (200)
235 1y63_A LMAJ004144AAA protein; 97.3 0.00018 6.2E-09 50.9 3.6 29 1-29 5-33 (184)
236 3ney_A 55 kDa erythrocyte memb 97.3 0.00019 6.6E-09 51.8 3.6 25 5-29 18-42 (197)
237 1qf9_A UMP/CMP kinase, protein 97.3 0.00019 6.5E-09 50.7 3.5 28 1-28 1-28 (194)
238 3a00_A Guanylate kinase, GMP k 97.2 0.00015 5E-09 51.5 2.8 20 9-28 4-23 (186)
239 3tr0_A Guanylate kinase, GMP k 97.2 0.00016 5.6E-09 51.7 3.0 22 8-29 9-30 (205)
240 1ex7_A Guanylate kinase; subst 97.2 0.00018 6.1E-09 51.5 3.1 21 9-29 4-24 (186)
241 4gp7_A Metallophosphoesterase; 97.2 0.00017 5.8E-09 50.6 2.8 20 8-27 11-30 (171)
242 1s96_A Guanylate kinase, GMP k 97.2 0.00019 6.3E-09 52.7 3.0 23 7-29 17-39 (219)
243 1zp6_A Hypothetical protein AT 97.2 0.00021 7.2E-09 50.6 3.2 25 5-29 8-32 (191)
244 1t9h_A YLOQ, probable GTPase E 97.2 9.9E-05 3.4E-09 56.9 1.5 22 8-29 175-196 (307)
245 1znw_A Guanylate kinase, GMP k 97.2 0.0002 7E-09 51.7 2.9 22 8-29 22-43 (207)
246 3tau_A Guanylate kinase, GMP k 97.2 0.00022 7.5E-09 51.6 3.0 24 6-29 8-31 (208)
247 1knq_A Gluconate kinase; ALFA/ 97.1 0.00036 1.2E-08 48.7 3.9 24 5-28 7-30 (175)
248 1z6g_A Guanylate kinase; struc 97.1 0.00023 7.8E-09 52.0 2.9 22 8-29 25-46 (218)
249 2yv5_A YJEQ protein; hydrolase 97.1 0.00059 2E-08 52.3 5.3 20 8-27 167-186 (302)
250 3c8u_A Fructokinase; YP_612366 97.1 0.0003 1E-08 50.8 3.4 25 4-28 20-44 (208)
251 1nn5_A Similar to deoxythymidy 97.1 0.00024 8.3E-09 51.1 2.9 28 1-28 4-31 (215)
252 2qor_A Guanylate kinase; phosp 97.1 0.0003 1E-08 50.6 3.1 24 6-29 12-35 (204)
253 3lw7_A Adenylate kinase relate 97.1 0.00032 1.1E-08 48.5 3.1 19 8-26 3-21 (179)
254 1puj_A YLQF, conserved hypothe 97.1 0.00014 4.8E-09 55.4 1.2 61 58-125 3-65 (282)
255 3kb2_A SPBC2 prophage-derived 97.1 0.00037 1.3E-08 48.2 3.2 21 8-28 3-23 (173)
256 3tif_A Uncharacterized ABC tra 97.0 0.00034 1.2E-08 51.8 3.0 22 8-29 33-54 (235)
257 1ly1_A Polynucleotide kinase; 97.0 0.00045 1.5E-08 48.2 3.5 22 7-28 3-24 (181)
258 1kag_A SKI, shikimate kinase I 97.0 0.00038 1.3E-08 48.4 3.0 23 7-29 5-27 (173)
259 1htw_A HI0065; nucleotide-bind 97.0 0.00038 1.3E-08 48.4 2.9 23 8-30 35-57 (158)
260 2bdt_A BH3686; alpha-beta prot 97.0 0.00041 1.4E-08 49.1 3.0 21 8-28 4-24 (189)
261 2bbw_A Adenylate kinase 4, AK4 97.0 0.00045 1.5E-08 51.1 3.3 22 6-27 27-48 (246)
262 3vaa_A Shikimate kinase, SK; s 97.0 0.00054 1.8E-08 49.0 3.4 23 6-28 25-47 (199)
263 1ukz_A Uridylate kinase; trans 97.0 0.00068 2.3E-08 48.4 4.0 25 4-28 13-37 (203)
264 1cke_A CK, MSSA, protein (cyti 96.9 0.00054 1.8E-08 49.8 3.4 23 6-28 5-27 (227)
265 3fb4_A Adenylate kinase; psych 96.9 0.00051 1.8E-08 49.6 3.2 21 8-28 2-22 (216)
266 3cm0_A Adenylate kinase; ATP-b 96.9 0.00068 2.3E-08 47.7 3.7 24 5-28 3-26 (186)
267 2rcn_A Probable GTPase ENGC; Y 96.9 0.00049 1.7E-08 54.1 3.1 23 8-30 217-239 (358)
268 2onk_A Molybdate/tungstate ABC 96.9 0.00052 1.8E-08 51.0 3.1 22 8-29 26-47 (240)
269 3dl0_A Adenylate kinase; phosp 96.9 0.00056 1.9E-08 49.4 3.3 21 8-28 2-22 (216)
270 2pcj_A ABC transporter, lipopr 96.9 0.00043 1.5E-08 50.8 2.6 22 8-29 32-53 (224)
271 1zd8_A GTP:AMP phosphotransfer 96.9 0.00047 1.6E-08 50.4 2.8 25 4-28 5-29 (227)
272 1qhx_A CPT, protein (chloramph 96.9 0.00054 1.8E-08 47.8 3.0 22 7-28 4-25 (178)
273 1sgw_A Putative ABC transporte 96.9 0.00054 1.9E-08 50.0 3.0 22 8-29 37-58 (214)
274 3gfo_A Cobalt import ATP-bindi 96.9 0.00053 1.8E-08 52.0 3.0 22 8-29 36-57 (275)
275 3t61_A Gluconokinase; PSI-biol 96.9 0.00054 1.8E-08 49.1 3.0 22 7-28 19-40 (202)
276 3tlx_A Adenylate kinase 2; str 96.9 0.00075 2.6E-08 50.0 3.8 25 4-28 27-51 (243)
277 1b0u_A Histidine permease; ABC 96.9 0.00054 1.8E-08 51.6 3.0 22 8-29 34-55 (262)
278 2cdn_A Adenylate kinase; phosp 96.9 0.00076 2.6E-08 48.2 3.8 25 4-28 18-42 (201)
279 3uie_A Adenylyl-sulfate kinase 96.9 0.00045 1.5E-08 49.5 2.5 24 5-28 24-47 (200)
280 2v54_A DTMP kinase, thymidylat 96.9 0.00075 2.6E-08 48.1 3.6 25 5-29 3-27 (204)
281 2i3b_A HCR-ntpase, human cance 96.9 0.00053 1.8E-08 49.1 2.8 21 8-28 3-23 (189)
282 3ec2_A DNA replication protein 96.9 0.00052 1.8E-08 48.2 2.7 24 6-29 38-61 (180)
283 2cbz_A Multidrug resistance-as 96.9 0.00063 2.1E-08 50.4 3.2 22 8-29 33-54 (237)
284 2jaq_A Deoxyguanosine kinase; 96.9 0.00069 2.4E-08 48.2 3.4 21 8-28 2-22 (205)
285 4g1u_C Hemin import ATP-bindin 96.9 0.0006 2E-08 51.4 3.1 22 8-29 39-60 (266)
286 2ehv_A Hypothetical protein PH 96.9 0.0006 2.1E-08 50.1 3.1 20 8-27 32-51 (251)
287 1g6h_A High-affinity branched- 96.9 0.00058 2E-08 51.2 3.0 22 8-29 35-56 (257)
288 1mv5_A LMRA, multidrug resista 96.9 0.00067 2.3E-08 50.4 3.3 22 8-29 30-51 (243)
289 1kht_A Adenylate kinase; phosp 96.8 0.00075 2.6E-08 47.5 3.4 22 7-28 4-25 (192)
290 2rhm_A Putative kinase; P-loop 96.8 0.00067 2.3E-08 47.9 3.1 24 5-28 4-27 (193)
291 3iij_A Coilin-interacting nucl 96.8 0.00074 2.5E-08 47.4 3.3 23 6-28 11-33 (180)
292 1nks_A Adenylate kinase; therm 96.8 0.0006 2.1E-08 48.0 2.9 21 8-28 3-23 (194)
293 2eyu_A Twitching motility prot 96.8 0.0006 2.1E-08 51.3 3.0 21 8-28 27-47 (261)
294 2ff7_A Alpha-hemolysin translo 96.8 0.00069 2.4E-08 50.5 3.2 22 8-29 37-58 (247)
295 2pze_A Cystic fibrosis transme 96.8 0.00065 2.2E-08 50.0 3.0 22 8-29 36-57 (229)
296 1np6_A Molybdopterin-guanine d 96.8 0.00072 2.5E-08 47.7 3.1 23 7-29 7-29 (174)
297 1ji0_A ABC transporter; ATP bi 96.8 0.00065 2.2E-08 50.4 3.0 22 8-29 34-55 (240)
298 2olj_A Amino acid ABC transpor 96.8 0.00067 2.3E-08 51.1 3.0 22 8-29 52-73 (263)
299 2qi9_C Vitamin B12 import ATP- 96.8 0.00069 2.3E-08 50.6 3.0 22 8-29 28-49 (249)
300 1vpl_A ABC transporter, ATP-bi 96.8 0.00069 2.4E-08 50.8 3.0 22 8-29 43-64 (256)
301 2plr_A DTMP kinase, probable t 96.8 0.00094 3.2E-08 47.8 3.7 23 6-28 4-26 (213)
302 1zak_A Adenylate kinase; ATP:A 96.8 0.00055 1.9E-08 49.8 2.4 25 4-28 3-27 (222)
303 1uj2_A Uridine-cytidine kinase 96.8 0.00082 2.8E-08 50.0 3.4 26 3-28 19-44 (252)
304 3trf_A Shikimate kinase, SK; a 96.8 0.00083 2.8E-08 47.2 3.3 23 6-28 5-27 (185)
305 1gvn_B Zeta; postsegregational 96.8 0.00098 3.4E-08 50.7 3.8 25 4-28 31-55 (287)
306 2d2e_A SUFC protein; ABC-ATPas 96.8 0.00073 2.5E-08 50.4 3.1 22 8-29 31-52 (250)
307 1aky_A Adenylate kinase; ATP:A 96.8 0.00086 2.9E-08 48.7 3.4 24 5-28 3-26 (220)
308 1tev_A UMP-CMP kinase; ploop, 96.8 0.00093 3.2E-08 47.1 3.5 23 6-28 3-25 (196)
309 1t9h_A YLOQ, probable GTPase E 96.8 0.002 6.7E-08 49.6 5.5 54 70-125 79-132 (307)
310 3b85_A Phosphate starvation-in 96.8 0.00056 1.9E-08 49.7 2.3 22 8-29 24-45 (208)
311 2zu0_C Probable ATP-dependent 96.8 0.00075 2.6E-08 50.9 3.1 22 8-29 48-69 (267)
312 2ghi_A Transport protein; mult 96.8 0.00083 2.8E-08 50.5 3.2 22 8-29 48-69 (260)
313 1jjv_A Dephospho-COA kinase; P 96.8 0.00099 3.4E-08 47.7 3.5 22 7-28 3-24 (206)
314 2ihy_A ABC transporter, ATP-bi 96.8 0.00084 2.9E-08 51.0 3.3 22 8-29 49-70 (279)
315 3lnc_A Guanylate kinase, GMP k 96.8 0.0005 1.7E-08 50.3 2.0 22 8-29 29-51 (231)
316 2ixe_A Antigen peptide transpo 96.8 0.00077 2.6E-08 50.9 3.0 22 8-29 47-68 (271)
317 2if2_A Dephospho-COA kinase; a 96.8 0.00071 2.4E-08 48.4 2.7 22 7-28 2-23 (204)
318 3sr0_A Adenylate kinase; phosp 96.7 0.00092 3.2E-08 48.5 3.3 21 8-28 2-22 (206)
319 2nq2_C Hypothetical ABC transp 96.7 0.00081 2.8E-08 50.3 3.0 22 8-29 33-54 (253)
320 2v9p_A Replication protein E1; 96.7 0.00084 2.9E-08 51.7 3.1 22 7-28 127-148 (305)
321 2yz2_A Putative ABC transporte 96.7 0.00084 2.9E-08 50.6 3.0 22 8-29 35-56 (266)
322 2jeo_A Uridine-cytidine kinase 96.7 0.001 3.6E-08 49.2 3.5 24 5-28 24-47 (245)
323 3aez_A Pantothenate kinase; tr 96.7 0.0012 4.1E-08 51.0 3.8 25 4-28 88-112 (312)
324 1jbk_A CLPB protein; beta barr 96.7 0.0011 3.8E-08 46.1 3.4 24 6-29 43-66 (195)
325 2wwf_A Thymidilate kinase, put 96.7 0.00099 3.4E-08 47.8 3.2 24 5-28 9-32 (212)
326 1u0l_A Probable GTPase ENGC; p 96.7 0.0011 3.8E-08 50.7 3.6 23 8-30 171-193 (301)
327 1via_A Shikimate kinase; struc 96.7 0.00097 3.3E-08 46.6 2.9 21 8-28 6-26 (175)
328 4a74_A DNA repair and recombin 96.7 0.00074 2.5E-08 49.0 2.4 21 8-28 27-47 (231)
329 2vli_A Antibiotic resistance p 96.7 0.00072 2.5E-08 47.4 2.3 24 5-28 4-27 (183)
330 2qt1_A Nicotinamide riboside k 96.7 0.0012 4.1E-08 47.4 3.4 25 5-29 20-44 (207)
331 2pjz_A Hypothetical protein ST 96.7 0.0011 3.8E-08 49.9 3.3 23 8-30 32-54 (263)
332 1e4v_A Adenylate kinase; trans 96.7 0.00093 3.2E-08 48.3 2.7 21 8-28 2-22 (214)
333 1rz3_A Hypothetical protein rb 96.6 0.0013 4.3E-08 47.2 3.4 25 4-28 20-44 (201)
334 1vht_A Dephospho-COA kinase; s 96.6 0.0014 4.9E-08 47.3 3.7 24 5-28 3-26 (218)
335 1odf_A YGR205W, hypothetical 3 96.6 0.0015 5.1E-08 49.9 3.8 24 4-27 29-52 (290)
336 3tqc_A Pantothenate kinase; bi 96.6 0.0015 5.3E-08 50.6 3.8 24 4-27 90-113 (321)
337 2c95_A Adenylate kinase 1; tra 96.6 0.0011 3.9E-08 46.8 2.9 24 5-28 8-31 (196)
338 1lw7_A Transcriptional regulat 96.6 0.00089 3.1E-08 52.6 2.5 23 6-28 170-192 (365)
339 3be4_A Adenylate kinase; malar 96.6 0.0011 3.8E-08 48.1 2.8 25 4-28 3-27 (217)
340 1uf9_A TT1252 protein; P-loop, 96.6 0.0013 4.5E-08 46.7 3.1 26 4-29 6-31 (203)
341 2pt5_A Shikimate kinase, SK; a 96.6 0.0015 5E-08 45.1 3.2 21 8-28 2-22 (168)
342 2xb4_A Adenylate kinase; ATP-b 96.6 0.0015 5.1E-08 47.7 3.4 21 8-28 2-22 (223)
343 2yvu_A Probable adenylyl-sulfa 96.6 0.0021 7.1E-08 45.3 4.0 24 5-28 12-35 (186)
344 3jvv_A Twitching mobility prot 96.6 0.0012 4.2E-08 51.8 3.0 21 8-28 125-145 (356)
345 4e22_A Cytidylate kinase; P-lo 96.5 0.0018 6E-08 48.3 3.7 22 6-27 27-48 (252)
346 2kjq_A DNAA-related protein; s 96.5 0.00099 3.4E-08 45.7 2.0 22 8-29 38-59 (149)
347 2ze6_A Isopentenyl transferase 96.5 0.0015 5E-08 48.8 3.1 21 8-28 3-23 (253)
348 1xjc_A MOBB protein homolog; s 96.5 0.0016 5.6E-08 45.7 3.1 22 7-28 5-26 (169)
349 2z0h_A DTMP kinase, thymidylat 96.5 0.0015 5.1E-08 46.2 2.9 21 8-28 2-22 (197)
350 1ixz_A ATP-dependent metallopr 96.5 0.0014 4.9E-08 48.5 3.0 22 8-29 51-72 (254)
351 2pbr_A DTMP kinase, thymidylat 96.5 0.0018 6.1E-08 45.6 3.2 21 8-28 2-22 (195)
352 2f1r_A Molybdopterin-guanine d 96.5 0.00057 2E-08 48.1 0.6 21 8-28 4-24 (171)
353 2p5t_B PEZT; postsegregational 96.5 0.0014 4.7E-08 48.8 2.7 25 4-28 30-54 (253)
354 1ak2_A Adenylate kinase isoenz 96.5 0.0019 6.6E-08 47.3 3.5 23 6-28 16-38 (233)
355 3nh6_A ATP-binding cassette SU 96.5 0.00094 3.2E-08 51.4 1.8 21 8-28 82-102 (306)
356 2bbs_A Cystic fibrosis transme 96.5 0.0014 4.7E-08 50.1 2.7 22 8-29 66-87 (290)
357 2bwj_A Adenylate kinase 5; pho 96.5 0.0012 4.2E-08 46.7 2.3 23 6-28 12-34 (199)
358 3a4m_A L-seryl-tRNA(SEC) kinas 96.5 0.002 6.9E-08 48.1 3.6 23 6-28 4-26 (260)
359 2x8a_A Nuclear valosin-contain 96.5 0.0015 5.2E-08 49.3 2.9 22 8-29 46-67 (274)
360 3tui_C Methionine import ATP-b 96.4 0.0017 5.7E-08 51.2 3.1 22 8-29 56-77 (366)
361 2w0m_A SSO2452; RECA, SSPF, un 96.4 0.0017 5.9E-08 46.9 3.0 21 8-28 25-45 (235)
362 2p65_A Hypothetical protein PF 96.4 0.0014 4.7E-08 45.6 2.4 24 6-29 43-66 (187)
363 1rj9_A FTSY, signal recognitio 96.4 0.0016 5.5E-08 50.0 2.9 22 6-27 102-123 (304)
364 1z47_A CYSA, putative ABC-tran 96.4 0.0017 5.7E-08 51.0 3.1 22 8-29 43-64 (355)
365 3fvq_A Fe(3+) IONS import ATP- 96.4 0.0014 4.9E-08 51.5 2.6 23 8-30 32-54 (359)
366 2ewv_A Twitching motility prot 96.4 0.0018 6E-08 51.2 3.1 22 7-28 137-158 (372)
367 3umf_A Adenylate kinase; rossm 96.4 0.002 6.9E-08 47.1 3.2 20 9-28 32-51 (217)
368 1e6c_A Shikimate kinase; phosp 96.4 0.0019 6.5E-08 44.7 2.9 21 8-28 4-24 (173)
369 2yyz_A Sugar ABC transporter, 96.4 0.0018 6.1E-08 51.0 3.1 22 8-29 31-52 (359)
370 2it1_A 362AA long hypothetical 96.4 0.0018 6.3E-08 51.0 3.1 22 8-29 31-52 (362)
371 3bos_A Putative DNA replicatio 96.4 0.0022 7.4E-08 46.5 3.3 23 6-28 52-74 (242)
372 3b9q_A Chloroplast SRP recepto 96.4 0.0019 6.4E-08 49.6 3.0 23 6-28 100-122 (302)
373 3rlf_A Maltose/maltodextrin im 96.4 0.0019 6.5E-08 51.2 3.1 22 8-29 31-52 (381)
374 2f6r_A COA synthase, bifunctio 96.4 0.0021 7.3E-08 48.6 3.3 24 4-27 73-96 (281)
375 2pt7_A CAG-ALFA; ATPase, prote 96.4 0.0017 5.7E-08 50.5 2.7 22 8-29 173-194 (330)
376 1zuh_A Shikimate kinase; alpha 96.4 0.0023 7.9E-08 44.2 3.2 22 7-28 8-29 (168)
377 1gtv_A TMK, thymidylate kinase 96.4 0.00061 2.1E-08 49.0 0.2 21 8-28 2-22 (214)
378 2gza_A Type IV secretion syste 96.4 0.0016 5.4E-08 51.2 2.5 22 8-29 177-198 (361)
379 1g29_1 MALK, maltose transport 96.4 0.002 6.7E-08 51.0 3.1 22 8-29 31-52 (372)
380 1v43_A Sugar-binding transport 96.3 0.0021 7.1E-08 50.8 3.1 22 8-29 39-60 (372)
381 1sq5_A Pantothenate kinase; P- 96.3 0.0022 7.6E-08 49.2 3.2 24 5-28 79-102 (308)
382 2vp4_A Deoxynucleoside kinase; 96.3 0.0026 8.7E-08 46.6 3.4 25 5-29 19-43 (230)
383 2iyv_A Shikimate kinase, SK; t 96.3 0.0023 7.7E-08 44.9 2.9 21 8-28 4-24 (184)
384 1iy2_A ATP-dependent metallopr 96.3 0.0021 7.3E-08 48.3 3.0 22 8-29 75-96 (278)
385 1p9r_A General secretion pathw 96.3 0.002 7E-08 51.7 3.0 22 8-29 169-190 (418)
386 3kta_A Chromosome segregation 96.3 0.0019 6.6E-08 45.2 2.6 21 8-28 28-48 (182)
387 1in4_A RUVB, holliday junction 96.3 0.0021 7.1E-08 49.9 2.9 22 8-29 53-74 (334)
388 3r20_A Cytidylate kinase; stru 96.3 0.0026 8.9E-08 47.0 3.2 25 4-28 7-31 (233)
389 2w58_A DNAI, primosome compone 96.3 0.0026 8.8E-08 45.3 3.1 23 7-29 55-77 (202)
390 3e70_C DPA, signal recognition 96.3 0.0031 1.1E-07 49.0 3.7 24 5-28 128-151 (328)
391 1zcb_A G alpha I/13; GTP-bindi 96.3 0.0029 9.8E-08 49.8 3.5 24 4-27 31-54 (362)
392 2pez_A Bifunctional 3'-phospho 96.2 0.0033 1.1E-07 43.9 3.5 23 6-28 5-27 (179)
393 1lv7_A FTSH; alpha/beta domain 96.2 0.0028 9.6E-08 47.0 3.3 24 6-29 45-68 (257)
394 4eaq_A DTMP kinase, thymidylat 96.2 0.0037 1.3E-07 45.9 3.9 24 5-28 25-48 (229)
395 3cnl_A YLQF, putative uncharac 96.2 0.00069 2.4E-08 51.0 -0.2 57 61-125 4-61 (262)
396 2cvh_A DNA repair and recombin 96.2 0.0028 9.4E-08 45.5 3.0 21 8-28 22-42 (220)
397 1n0w_A DNA repair protein RAD5 96.2 0.0029 9.8E-08 46.2 3.1 22 8-29 26-47 (243)
398 1njg_A DNA polymerase III subu 96.2 0.0028 9.5E-08 45.7 3.0 21 8-28 47-67 (250)
399 3d31_A Sulfate/molybdate ABC t 96.2 0.0017 5.8E-08 50.9 1.8 22 8-29 28-49 (348)
400 2oap_1 GSPE-2, type II secreti 96.2 0.0021 7.3E-08 52.9 2.5 23 8-30 262-284 (511)
401 1a7j_A Phosphoribulokinase; tr 96.2 0.0017 5.9E-08 49.5 1.8 27 1-28 1-27 (290)
402 3qf7_A RAD50; ABC-ATPase, ATPa 96.2 0.014 4.7E-07 45.9 7.0 19 9-27 26-44 (365)
403 1f2t_A RAD50 ABC-ATPase; DNA d 96.2 0.0034 1.2E-07 43.0 3.1 19 9-27 26-44 (149)
404 2chg_A Replication factor C sm 96.2 0.0032 1.1E-07 44.8 3.0 22 8-29 40-61 (226)
405 3n70_A Transport activator; si 96.1 0.0034 1.2E-07 42.5 2.9 26 5-30 23-48 (145)
406 1m7g_A Adenylylsulfate kinase; 96.1 0.0044 1.5E-07 44.6 3.5 24 5-28 24-47 (211)
407 3gd7_A Fusion complex of cysti 96.1 0.0027 9.2E-08 50.5 2.6 21 8-28 49-69 (390)
408 3nwj_A ATSK2; P loop, shikimat 96.1 0.0031 1.1E-07 47.0 2.8 22 7-28 49-70 (250)
409 3crm_A TRNA delta(2)-isopenten 96.1 0.0046 1.6E-07 47.9 3.8 22 7-28 6-27 (323)
410 1cr0_A DNA primase/helicase; R 96.1 0.0028 9.6E-08 48.1 2.5 21 8-28 37-57 (296)
411 1nij_A Hypothetical protein YJ 96.1 0.0021 7.2E-08 49.6 1.8 22 8-29 6-27 (318)
412 1ltq_A Polynucleotide kinase; 96.1 0.0036 1.2E-07 47.5 3.1 22 7-28 3-24 (301)
413 1oxx_K GLCV, glucose, ABC tran 96.0 0.0017 5.7E-08 51.0 1.0 22 8-29 33-54 (353)
414 2og2_A Putative signal recogni 96.0 0.0056 1.9E-07 48.1 4.0 23 6-28 157-179 (359)
415 2npi_A Protein CLP1; CLP1-PCF1 96.0 0.0027 9.2E-08 51.6 2.2 21 8-28 140-160 (460)
416 3d3q_A TRNA delta(2)-isopenten 96.0 0.0047 1.6E-07 48.2 3.4 22 7-28 8-29 (340)
417 3t15_A Ribulose bisphosphate c 96.0 0.0037 1.3E-07 47.6 2.8 25 5-29 35-59 (293)
418 2obl_A ESCN; ATPase, hydrolase 95.9 0.0036 1.2E-07 49.0 2.7 23 8-30 73-95 (347)
419 3b9p_A CG5977-PA, isoform A; A 95.9 0.0045 1.5E-07 46.8 3.1 24 6-29 54-77 (297)
420 2qz4_A Paraplegin; AAA+, SPG7, 95.9 0.0051 1.7E-07 45.4 3.3 23 6-28 39-61 (262)
421 3h4m_A Proteasome-activating n 95.9 0.0047 1.6E-07 46.4 3.1 25 5-29 50-74 (285)
422 2yhs_A FTSY, cell division pro 95.9 0.0059 2E-07 50.0 3.8 23 6-28 293-315 (503)
423 1d2n_A N-ethylmaleimide-sensit 95.9 0.0065 2.2E-07 45.4 3.8 26 4-29 62-87 (272)
424 1tue_A Replication protein E1; 95.9 0.0039 1.3E-07 45.3 2.4 22 7-28 59-80 (212)
425 1l8q_A Chromosomal replication 95.9 0.0044 1.5E-07 47.5 2.9 23 7-29 38-60 (324)
426 3syl_A Protein CBBX; photosynt 95.9 0.0049 1.7E-07 46.7 3.1 24 5-28 66-89 (309)
427 3ake_A Cytidylate kinase; CMP 95.8 0.0069 2.4E-07 43.1 3.6 21 8-28 4-24 (208)
428 2dr3_A UPF0273 protein PH0284; 95.8 0.0046 1.6E-07 45.2 2.6 20 8-27 25-44 (247)
429 1yqt_A RNAse L inhibitor; ATP- 95.8 0.0056 1.9E-07 50.7 3.3 22 8-29 49-70 (538)
430 1q3t_A Cytidylate kinase; nucl 95.8 0.0066 2.3E-07 44.5 3.4 25 4-28 14-38 (236)
431 1svm_A Large T antigen; AAA+ f 95.8 0.005 1.7E-07 48.7 2.9 23 6-28 169-191 (377)
432 3ld9_A DTMP kinase, thymidylat 95.8 0.0073 2.5E-07 44.3 3.6 28 1-28 16-43 (223)
433 2grj_A Dephospho-COA kinase; T 95.8 0.0072 2.5E-07 43.2 3.5 24 5-28 11-34 (192)
434 3zvl_A Bifunctional polynucleo 95.7 0.0076 2.6E-07 48.2 3.8 25 5-29 257-281 (416)
435 2qmh_A HPR kinase/phosphorylas 95.7 0.0063 2.2E-07 43.9 3.0 24 7-30 35-58 (205)
436 3cf0_A Transitional endoplasmi 95.7 0.006 2E-07 46.5 3.1 24 6-29 49-72 (301)
437 2qby_A CDC6 homolog 1, cell di 95.7 0.0045 1.5E-07 48.1 2.5 23 6-28 45-67 (386)
438 3b5x_A Lipid A export ATP-bind 95.7 0.0058 2E-07 51.0 3.3 22 8-29 371-392 (582)
439 3ozx_A RNAse L inhibitor; ATP 95.7 0.0055 1.9E-07 50.7 3.0 22 8-29 27-48 (538)
440 1fnn_A CDC6P, cell division co 95.7 0.0061 2.1E-07 47.5 3.2 22 8-29 46-67 (389)
441 1nlf_A Regulatory protein REPA 95.7 0.0049 1.7E-07 46.4 2.5 21 8-28 32-52 (279)
442 3euj_A Chromosome partition pr 95.7 0.0056 1.9E-07 50.0 3.0 21 8-28 31-51 (483)
443 3b60_A Lipid A export ATP-bind 95.7 0.005 1.7E-07 51.4 2.8 22 8-29 371-392 (582)
444 1ofh_A ATP-dependent HSL prote 95.7 0.006 2.1E-07 46.1 3.0 23 6-28 50-72 (310)
445 3foz_A TRNA delta(2)-isopenten 95.6 0.0093 3.2E-07 46.0 3.8 23 6-28 10-32 (316)
446 2dpy_A FLII, flagellum-specifi 95.6 0.0055 1.9E-07 49.5 2.7 23 8-30 159-181 (438)
447 4ido_A Atlastin-1; GTPase, GTP 95.6 0.023 7.9E-07 46.0 6.1 23 5-27 66-88 (457)
448 1p5z_B DCK, deoxycytidine kina 95.6 0.0056 1.9E-07 45.6 2.4 25 5-29 23-47 (263)
449 1sxj_E Activator 1 40 kDa subu 95.6 0.0054 1.8E-07 47.5 2.4 20 9-28 39-58 (354)
450 2yl4_A ATP-binding cassette SU 95.6 0.0054 1.8E-07 51.3 2.5 22 8-29 372-393 (595)
451 3j16_B RLI1P; ribosome recycli 95.6 0.0069 2.4E-07 50.9 3.1 22 8-29 105-126 (608)
452 3exa_A TRNA delta(2)-isopenten 95.6 0.0078 2.7E-07 46.5 3.1 22 8-29 5-26 (322)
453 3a8t_A Adenylate isopentenyltr 95.6 0.0079 2.7E-07 46.9 3.2 22 7-28 41-62 (339)
454 2qen_A Walker-type ATPase; unk 95.6 0.0075 2.6E-07 46.2 3.1 22 8-29 33-54 (350)
455 3qf4_B Uncharacterized ABC tra 95.5 0.0061 2.1E-07 51.1 2.6 22 8-29 383-404 (598)
456 4a82_A Cystic fibrosis transme 95.5 0.0051 1.7E-07 51.3 2.0 21 8-28 369-389 (578)
457 3qks_A DNA double-strand break 95.5 0.0091 3.1E-07 42.9 3.1 19 9-27 26-44 (203)
458 3co5_A Putative two-component 95.5 0.0041 1.4E-07 42.1 1.1 24 6-29 27-50 (143)
459 3pxg_A Negative regulator of g 95.5 0.0079 2.7E-07 48.9 3.0 23 6-28 201-223 (468)
460 3bk7_A ABC transporter ATP-bin 95.5 0.0086 2.9E-07 50.3 3.3 22 8-29 119-140 (607)
461 4fcw_A Chaperone protein CLPB; 95.5 0.011 3.8E-07 44.8 3.7 23 7-29 48-70 (311)
462 1sxj_C Activator 1 40 kDa subu 95.4 0.0079 2.7E-07 46.5 2.9 22 8-29 48-69 (340)
463 1sxj_D Activator 1 41 kDa subu 95.4 0.0081 2.8E-07 46.3 2.9 22 8-29 60-81 (353)
464 1yqt_A RNAse L inhibitor; ATP- 95.4 0.0093 3.2E-07 49.4 3.3 22 8-29 314-335 (538)
465 3ozx_A RNAse L inhibitor; ATP 95.4 0.0083 2.8E-07 49.7 3.0 22 8-29 296-317 (538)
466 1xwi_A SKD1 protein; VPS4B, AA 95.4 0.0091 3.1E-07 46.0 3.1 23 7-29 46-68 (322)
467 2fna_A Conserved hypothetical 95.4 0.0068 2.3E-07 46.5 2.4 22 8-29 32-53 (357)
468 3eie_A Vacuolar protein sortin 95.4 0.0093 3.2E-07 45.8 3.1 24 6-29 51-74 (322)
469 3gmt_A Adenylate kinase; ssgci 95.4 0.011 3.8E-07 43.6 3.4 24 5-28 7-30 (230)
470 1pzn_A RAD51, DNA repair and r 95.4 0.0072 2.5E-07 47.2 2.5 22 8-29 133-154 (349)
471 2qgz_A Helicase loader, putati 95.4 0.0095 3.3E-07 45.7 3.1 23 6-28 152-174 (308)
472 1c9k_A COBU, adenosylcobinamid 95.4 0.0083 2.8E-07 42.5 2.6 21 9-29 2-22 (180)
473 2ga8_A Hypothetical 39.9 kDa p 95.4 0.013 4.5E-07 45.9 3.9 24 5-28 23-46 (359)
474 2px0_A Flagellar biosynthesis 95.4 0.0083 2.8E-07 45.8 2.8 22 6-27 105-126 (296)
475 3qf4_A ABC transporter, ATP-bi 95.4 0.007 2.4E-07 50.6 2.5 21 8-28 371-391 (587)
476 2ocp_A DGK, deoxyguanosine kin 95.4 0.0099 3.4E-07 43.6 3.0 24 6-29 2-25 (241)
477 3u61_B DNA polymerase accessor 95.4 0.022 7.4E-07 43.5 5.1 21 9-29 51-71 (324)
478 3bk7_A ABC transporter ATP-bin 95.3 0.0092 3.2E-07 50.1 3.1 22 8-29 384-405 (607)
479 2v1u_A Cell division control p 95.3 0.008 2.7E-07 46.7 2.6 25 5-29 43-67 (387)
480 2bjv_A PSP operon transcriptio 95.3 0.011 3.8E-07 43.9 3.1 25 6-30 29-53 (265)
481 3uk6_A RUVB-like 2; hexameric 95.3 0.0087 3E-07 46.5 2.6 23 7-29 71-93 (368)
482 1vma_A Cell division protein F 95.3 0.017 5.7E-07 44.4 4.1 22 6-27 104-125 (306)
483 2r62_A Cell division protease 95.2 0.0045 1.6E-07 46.0 0.8 21 8-28 46-66 (268)
484 3pfi_A Holliday junction ATP-d 95.2 0.012 4.1E-07 45.3 3.2 24 6-29 55-78 (338)
485 2h92_A Cytidylate kinase; ross 95.2 0.011 3.8E-07 42.5 2.8 23 6-28 3-25 (219)
486 2qby_B CDC6 homolog 3, cell di 95.2 0.0092 3.1E-07 46.5 2.5 24 6-29 45-68 (384)
487 2z4s_A Chromosomal replication 95.1 0.011 3.8E-07 47.6 2.9 22 7-28 131-152 (440)
488 3j16_B RLI1P; ribosome recycli 95.1 0.012 4.1E-07 49.5 3.1 21 9-29 381-401 (608)
489 1um8_A ATP-dependent CLP prote 95.1 0.013 4.5E-07 45.9 3.2 24 6-29 72-95 (376)
490 4b4t_M 26S protease regulatory 95.1 0.014 4.8E-07 47.0 3.3 25 5-29 214-238 (434)
491 4edh_A DTMP kinase, thymidylat 95.1 0.014 4.8E-07 42.4 3.0 23 6-28 6-28 (213)
492 1tf7_A KAIC; homohexamer, hexa 95.1 0.01 3.5E-07 48.9 2.5 19 8-26 41-59 (525)
493 2zts_A Putative uncharacterize 95.0 0.014 5E-07 42.5 3.1 20 8-27 32-51 (251)
494 2qp9_X Vacuolar protein sortin 95.0 0.013 4.4E-07 45.8 3.0 23 7-29 85-107 (355)
495 2iw3_A Elongation factor 3A; a 95.0 0.015 5E-07 51.4 3.5 24 8-31 463-486 (986)
496 3v9p_A DTMP kinase, thymidylat 95.0 0.01 3.4E-07 43.6 2.1 24 5-28 24-47 (227)
497 3d8b_A Fidgetin-like protein 1 95.0 0.014 4.9E-07 45.5 3.1 24 6-29 117-140 (357)
498 3tqf_A HPR(Ser) kinase; transf 95.0 0.014 4.9E-07 41.2 2.7 23 8-30 18-40 (181)
499 3lda_A DNA repair protein RAD5 95.0 0.011 3.9E-07 47.0 2.5 20 8-27 180-199 (400)
500 3hws_A ATP-dependent CLP prote 95.0 0.015 5.1E-07 45.4 3.2 25 5-29 50-74 (363)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=5.5e-33 Score=206.23 Aligned_cols=122 Identities=32% Similarity=0.584 Sum_probs=102.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeee-eEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
+.+||+|+|++|||||||++||+.+.|.+.+.||.+.. ..+.+..++..+++++|||+|+++|+.+++.|+++++++++
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~il 91 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVV 91 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEE
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEE
Confidence 56899999999999999999999999999999998655 45677788999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccch
Q 030525 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
|||++++.||+++ ..|+..+.... +++|++|||||+|+.+.+.
T Consensus 92 v~di~~~~Sf~~i-~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~ 135 (216)
T 4dkx_A 92 VYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLADKRQ 135 (216)
T ss_dssp EEETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECTTCGGGCC
T ss_pred EeecchhHHHHHH-HHHHHHHHHhcCCCCeEEEEeeccchHhcCc
Confidence 9999999999999 88888887654 7899999999999988776
No 2
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.96 E-value=1.3e-28 Score=176.68 Aligned_cols=126 Identities=31% Similarity=0.477 Sum_probs=112.3
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 030525 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (175)
Q Consensus 1 m~~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 80 (175)
|..++.+||+++|++|||||||+++|.++.+...+.++....+...+..++..+.+++||+||++++...+..+++++|+
T Consensus 1 m~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 80 (181)
T 3t5g_A 1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDING 80 (181)
T ss_dssp -CCEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSE
T ss_pred CCCCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCE
Confidence 77788999999999999999999999999998888899888887788889999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCcccch
Q 030525 81 FILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 81 vi~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~ 127 (175)
+++|||++++.+++.+ ..|+..+.+.. .+.|+++|+||+|+.+++.
T Consensus 81 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 128 (181)
T 3t5g_A 81 YILVYSVTSIKSFEVI-KVIHGKLLDMVGKVQIPIMLVGNKKDLHMERV 128 (181)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHHHC----CCEEEEEECTTCTTTCC
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccchhcce
Confidence 9999999999999999 88888876554 4899999999999976554
No 3
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.96 E-value=7.3e-29 Score=182.47 Aligned_cols=128 Identities=85% Similarity=1.399 Sum_probs=114.7
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 030525 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (175)
Q Consensus 1 m~~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 80 (175)
|.....+||+++|++|||||||+++|..+.+...+.++..+.+...+..++..+.+++|||||++++..++..+++++|+
T Consensus 4 m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 83 (212)
T 2j0v_A 4 MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADI 83 (212)
T ss_dssp CSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSE
T ss_pred CCcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCE
Confidence 67778999999999999999999999999998888888888877777788889999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccchh
Q 030525 81 FILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF 128 (175)
Q Consensus 81 vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 128 (175)
+++|||++++.+++.+...|+..+....++.|+++|+||+|+.+++.+
T Consensus 84 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 131 (212)
T 2j0v_A 84 FVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGY 131 (212)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccc
Confidence 999999999999999855899999887778999999999999876543
No 4
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.96 E-value=1.1e-29 Score=182.18 Aligned_cols=128 Identities=95% Similarity=1.498 Sum_probs=96.4
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 030525 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (175)
Q Consensus 1 m~~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 80 (175)
|+.++.+||+++|++|||||||++++..+.+...+.++..+.+...+..++..+.+++|||||++++...+..+++++|+
T Consensus 3 ~~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 82 (182)
T 3bwd_D 3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (182)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSE
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCE
Confidence 66778999999999999999999999999988888888776665555567778889999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccchh
Q 030525 81 FILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF 128 (175)
Q Consensus 81 vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 128 (175)
+++|||++++.+++.+...|+..+....++.|+++|+||+|+.+.+..
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 130 (182)
T 3bwd_D 83 FILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQF 130 (182)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCccc
Confidence 999999999999999844899999887778999999999999876654
No 5
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.96 E-value=1.9e-28 Score=177.42 Aligned_cols=123 Identities=24% Similarity=0.422 Sum_probs=106.1
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
+...+||+++|++|||||||+++|+++.+...+.++....+...+..++..+.+++|||+|++++... ..+++++|+++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i 96 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL 96 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence 45689999999999999999999999999888889988887777788999999999999999988775 57899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCcccch
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYA----PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~ 127 (175)
+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.+.
T Consensus 97 lv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~ 144 (187)
T 3c5c_A 97 VVYSVDSRQSFDSS-SSYLELLALHAKETQRSIPALLLGNKLDMAQYRQ 144 (187)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCS
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHHhhccCCCCCEEEEEECcchhhcCc
Confidence 99999999999998 88998887653 5899999999999976554
No 6
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.96 E-value=3.6e-28 Score=176.45 Aligned_cols=123 Identities=50% Similarity=0.941 Sum_probs=113.3
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
..+.+||+++|++|||||||++++.++.+...+.++....+...+..++..+.+++|||||++++...+..+++++|+++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 99 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL 99 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence 35679999999999999999999999999888889988888888888999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
+|||++++.+++.+...|...+....++.|+++|+||+|+.++
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 142 (194)
T 3reg_A 100 LCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKD 142 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccC
Confidence 9999999999999768899999887788999999999999754
No 7
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.96 E-value=2.2e-28 Score=180.76 Aligned_cols=122 Identities=39% Similarity=0.726 Sum_probs=110.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
...+||+++|++|||||||+++|.++.+...+.++....+...+..++..+.+.+|||+|++++...+..+++++|++|+
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 104 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 104 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEE
Confidence 35789999999999999999999999999888899888888778888889999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
|||++++.+++.+...|+..+....++.|+++|+||+|+.++
T Consensus 105 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 146 (214)
T 3q3j_B 105 CFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTD 146 (214)
T ss_dssp EEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGC
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccc
Confidence 999999999999448999999988889999999999999864
No 8
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.96 E-value=3.8e-28 Score=175.06 Aligned_cols=123 Identities=39% Similarity=0.779 Sum_probs=111.3
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
++..+||+++|++|||||||+++|.++.+...+.++....+...+..++..+.+.+||+||++++...+..+++++|+++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 46789999999999999999999999999888888888777777778888999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
+|||++++.+++.+...|+..+....++.|+++|+||+|+.++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 126 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTD 126 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcc
Confidence 9999999999998867899988887788999999999999764
No 9
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=4.8e-28 Score=175.68 Aligned_cols=123 Identities=59% Similarity=1.142 Sum_probs=112.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
+..+||+++|++|||||||+++|.++.+...+.++..+.+...+..++..+.+.+||+||++++...+..+++++|++++
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 95 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI 95 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEE
Confidence 46799999999999999999999999998888888888777777788888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
|||++++.+++.+...|+..+....++.|+++|+||+|+.+..
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 138 (194)
T 2atx_A 96 CFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDP 138 (194)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCH
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccc
Confidence 9999999999998448999998877789999999999997654
No 10
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.96 E-value=3.5e-28 Score=177.67 Aligned_cols=126 Identities=31% Similarity=0.492 Sum_probs=105.8
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 030525 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (175)
Q Consensus 1 m~~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 80 (175)
|...+.+||+++|++|||||||+++|.++.+...+.++....+...+..++..+.+.+|||||++++...+..+++++|+
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 98 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG 98 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence 45567899999999999999999999999998888888887776667777788999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCcccch
Q 030525 81 FILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 81 vi~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~ 127 (175)
+++|||++++.+++.+ ..|+..+.... .++|+++|+||+|+.+++.
T Consensus 99 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~ 146 (201)
T 3oes_A 99 YVLVYSVTSLHSFQVI-ESLYQKLHEGHGKTRVPVVLVGNKADLSPERE 146 (201)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHC-----CCCEEEEEECTTCGGGCC
T ss_pred EEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccCccccc
Confidence 9999999999999999 88998887653 4799999999999986654
No 11
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.96 E-value=9.2e-28 Score=175.11 Aligned_cols=124 Identities=57% Similarity=1.043 Sum_probs=104.2
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
.+..+||+++|++|||||||+++|.++.+...+.+++.+.+...+..++..+.+++|||||++++...+..+++++|+++
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 96 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFL 96 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEE
Confidence 45689999999999999999999999998888888888888777888999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
+|||++++.+++.+...|+..+....++.|+++|+||+|+.+..
T Consensus 97 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 140 (201)
T 2q3h_A 97 LCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDV 140 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhch
Confidence 99999999999998448999998877799999999999997643
No 12
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.95 E-value=7e-28 Score=172.33 Aligned_cols=116 Identities=23% Similarity=0.369 Sum_probs=101.4
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 030525 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (175)
Q Consensus 1 m~~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 80 (175)
|...+.+||+++|++|||||||+++|.++.+.+ +.++..+.+.+.+..++..+.+++|||||+++ ..+++++|+
T Consensus 2 m~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~ 75 (178)
T 2iwr_A 2 MRSIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADA 75 (178)
T ss_dssp CCCCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSE
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCE
Confidence 777789999999999999999999999999876 67777777777888899999999999999986 467899999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhc---C-CCCcEEEEEeCCCCc
Q 030525 81 FILAFSLISKASYENVAKKWIPELRHY---A-PGVPIILVGTKLDLR 123 (175)
Q Consensus 81 vi~v~d~~~~~s~~~~~~~~~~~~~~~---~-~~~p~ilv~nK~Dl~ 123 (175)
+++|||++++.+++.+ ..|+..+... . +++|+++|+||+|+.
T Consensus 76 ~ilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 76 VIFVFSLEDENSFQAV-SRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred EEEEEECcCHHHHHHH-HHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9999999999999998 7776555443 2 579999999999995
No 13
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.95 E-value=1.2e-27 Score=175.94 Aligned_cols=122 Identities=39% Similarity=0.786 Sum_probs=111.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
+..+||+++|++|||||||+++|.++.+...+.++....+...+..++..+.+++|||||++++...+..+++++|++++
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 105 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 105 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence 46799999999999999999999999998888888887777777778888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
|||++++.+++++...|+..+.+..++.|+++|+||+|+.+.
T Consensus 106 v~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 147 (205)
T 1gwn_A 106 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTD 147 (205)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccc
Confidence 999999999998867899999887778999999999999754
No 14
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.95 E-value=1.3e-27 Score=171.64 Aligned_cols=123 Identities=33% Similarity=0.550 Sum_probs=110.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
.+.+||+++|++|||||||+++|.++.+...+.++....+......++..+.+++||+||++++...+..+++++|++++
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI 95 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 45899999999999999999999999998888888888887788889999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCcccch
Q 030525 84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~ 127 (175)
|||++++.+++.+ ..|+..+.+. ..+.|+++|+||+|+.+.+.
T Consensus 96 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 140 (183)
T 3kkq_A 96 VYSVTDKASFEHV-DRFHQLILRVKDRESFPMILVANKVDLMHLRK 140 (183)
T ss_dssp EEETTCHHHHHTH-HHHHHHHHHHHTSSCCCEEEEEECTTCSTTCC
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECCCchhccC
Confidence 9999999999998 7888887653 26899999999999976554
No 15
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.95 E-value=5.9e-27 Score=167.36 Aligned_cols=124 Identities=34% Similarity=0.610 Sum_probs=108.0
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeee-eEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v 81 (175)
.+..+||+++|++|||||||++++.++.+...+.++.... ....+..++..+.+.+||+||++++...+..+++++|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 85 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 85 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence 3578999999999999999999999998887777777544 445677888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 82 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
++|||++++.+++.+ ..|+..+....++.|+++|+||+|+.+.+.
T Consensus 86 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 130 (181)
T 3tw8_B 86 IVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNKNDDPERKV 130 (181)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHCTTSEEEEEEECTTCGGGCC
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECCCCchhcc
Confidence 999999999999998 889999988778899999999999987554
No 16
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.95 E-value=2.3e-27 Score=170.35 Aligned_cols=123 Identities=73% Similarity=1.242 Sum_probs=111.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
.+.+||+++|++|||||||+++|.++.+...+.++..+.+...+..++..+.+++|||||++++...+..+++.+|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 46799999999999999999999999998888888887777778889999999999999999999999899999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
|||++++.+++.+...|+..+....++.|+++|+||+|+.+..
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 125 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 125 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCH
T ss_pred EEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccc
Confidence 9999999999998448999998877789999999999997653
No 17
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.95 E-value=1.4e-27 Score=168.59 Aligned_cols=122 Identities=30% Similarity=0.575 Sum_probs=108.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v 84 (175)
+.+||+++|++|||||||++++.++.+...+.++....+...+..++..+.+.+||+||++++...+..+++++|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 46899999999999999999999999988888888887777777888899999999999999999888999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCcccch
Q 030525 85 FSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~ 127 (175)
||++++.+++.+ ..|+..+.+. ..+.|+++|+||+|+.+++.
T Consensus 82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~ 125 (167)
T 1c1y_A 82 YSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDERV 125 (167)
T ss_dssp EETTCHHHHHTH-HHHHHHHHHHHCCSCCCEEEEEECTTCGGGCC
T ss_pred EECCCHHHHHHH-HHHHHHHHHhhCcCCCcEEEEEECcccccccc
Confidence 999999999998 7788777654 25899999999999976544
No 18
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.95 E-value=1.8e-27 Score=175.76 Aligned_cols=124 Identities=48% Similarity=0.935 Sum_probs=92.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
.+.+||+++|++|||||||+++|.++.+...+.++....+...+..++..+.+.+|||||++++...+..+++++|++++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL 111 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence 35799999999999999999999999988888888887777788889999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
|||++++.+++.+...|+..+....++.|+++|+||+|+.+.+.
T Consensus 112 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 155 (214)
T 2j1l_A 112 CFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKS 155 (214)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccch
Confidence 99999999999985589999988778899999999999987643
No 19
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.95 E-value=4.3e-27 Score=169.99 Aligned_cols=116 Identities=25% Similarity=0.401 Sum_probs=103.1
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 030525 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (175)
Q Consensus 2 ~~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v 81 (175)
...+.+||+++|++|||||||+++++++.+...+.++ ...+...+.+++..+.+++|||+|++++. +++++|++
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~ 89 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAV 89 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEE
Confidence 3457899999999999999999999999998877777 55666788889999999999999998876 88899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCcc
Q 030525 82 ILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRD 124 (175)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~ 124 (175)
++|||++++.+|+.+ ..|+..+.... .++|+++|+||+|+.+
T Consensus 90 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 133 (184)
T 3ihw_A 90 VFVFSLEDEISFQTV-YNYFLRLCSFRNASEVPMVLVGTQDAISA 133 (184)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHTTSCGGGSCEEEEEECTTCBT
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 999999999999998 78999988764 5799999999999953
No 20
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.95 E-value=3.7e-27 Score=168.39 Aligned_cols=123 Identities=34% Similarity=0.599 Sum_probs=109.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
+..+||+++|++|||||||+++|.++.+...+.+++...+...+..++..+.+.+||+||++++...+..+++.+|++++
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~ 86 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLL 86 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEE
Confidence 46799999999999999999999999998888888888877778888888999999999999999988899999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhh-cC-CCCcEEEEEeCCCCcccch
Q 030525 84 AFSLISKASYENVAKKWIPELRH-YA-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~-~~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
|||++++.+++.+ ..|+..+.+ .. .+.|+++|+||+|+.+.+.
T Consensus 87 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 131 (181)
T 2fn4_A 87 VFAINDRQSFNEV-GKLFTQILRVKDRDDFPVVLVGNKADLESQRQ 131 (181)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHHHHTSSCCCEEEEEECGGGGGGCC
T ss_pred EEeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc
Confidence 9999999999998 788877743 33 5899999999999977554
No 21
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.95 E-value=1.7e-27 Score=171.10 Aligned_cols=123 Identities=31% Similarity=0.696 Sum_probs=82.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
+..+||+++|++|||||||+++|.++.+...+.++....+ ...+..++..+.+++||+||++++...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 4689999999999999999999999888777677765544 456777888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccch
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+.
T Consensus 86 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~ 130 (183)
T 2fu5_C 86 LVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVNDKRQ 130 (183)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEEC--CCSCCC
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECccCCccCc
Confidence 99999999999998 78998887764 6899999999999976544
No 22
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.95 E-value=2.5e-27 Score=173.81 Aligned_cols=124 Identities=73% Similarity=1.249 Sum_probs=110.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
.+.+||+++|++|||||||+++|..+.+...+.+++.+.+...+..++..+.+.+|||||++++...+..+++++|++++
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 107 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 107 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 46799999999999999999999999998888888888888888888999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
|||++++.+++.+...|+..+....++.|+++|+||+|+.+.+.
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 151 (204)
T 4gzl_A 108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 151 (204)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchh
Confidence 99999999999985589999988778899999999999987654
No 23
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.95 E-value=4e-27 Score=166.80 Aligned_cols=124 Identities=34% Similarity=0.691 Sum_probs=101.6
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v 81 (175)
.+..+||+++|++|||||||++++.++.+...+.++....+ ...+..++..+.+.+||+||++++...+..+++++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 46789999999999999999999999988877777775554 45667788889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccch
Q 030525 82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+++.
T Consensus 83 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 128 (170)
T 1z08_A 83 ILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKERH 128 (170)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHHGGGSEEEEEEECGGGGGGCC
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECcccccccc
Confidence 999999999999998 88988877654 5799999999999976544
No 24
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.95 E-value=1.1e-26 Score=170.16 Aligned_cols=124 Identities=35% Similarity=0.734 Sum_probs=109.4
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v 81 (175)
.+..+||+++|++|||||||+++|.++.+...+.++....+ ...+..++..+.+.+|||||++++...+..+++++|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v 84 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI 84 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence 35679999999999999999999999998877777775544 45677888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccch
Q 030525 82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.+.
T Consensus 85 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~ 130 (206)
T 2bcg_Y 85 IIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKDKRV 130 (206)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc
Confidence 999999999999998 88998887765 6799999999999976543
No 25
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.95 E-value=6.7e-27 Score=170.95 Aligned_cols=123 Identities=58% Similarity=1.036 Sum_probs=111.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
+..+||+++|++|||||||++++.++.+...+.++....+...+..++..+.+.+||+||++++...+..+++++|++++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence 46789999999999999999999999998888888877777777888889999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
|||++++.+++.+...|...+....++.|+++|+||+|+.+..
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 145 (201)
T 2gco_A 103 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDE 145 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCH
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCc
Confidence 9999999999998678999888877789999999999997653
No 26
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.95 E-value=2.5e-27 Score=167.07 Aligned_cols=122 Identities=34% Similarity=0.636 Sum_probs=107.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v 84 (175)
+.+||+++|++|||||||++++.++.+...+.++....+...+..++..+.+.+||+||++++...+..+++.+|++++|
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 46899999999999999999999999988888888887777778899899999999999999988888999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCcccch
Q 030525 85 FSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~ 127 (175)
||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.+.
T Consensus 83 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~ 126 (168)
T 1u8z_A 83 FSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ 126 (168)
T ss_dssp EETTCHHHHHHH-HHHHHHHHHHHCCTTSCEEEEEECGGGGGGCC
T ss_pred EECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECccccccCc
Confidence 999999999998 88888887654 3899999999999976544
No 27
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.95 E-value=2e-27 Score=173.94 Aligned_cols=123 Identities=33% Similarity=0.638 Sum_probs=101.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
+..+||+++|++|||||||+++|.++.+...+.++....+ ...+..++..+.+++||+||++++...+..+++++|+++
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 4679999999999999999999999998877777765444 556778888899999999999999998889999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccch
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.+.
T Consensus 107 lv~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~ 151 (201)
T 2hup_A 107 LAYDITKRSSFLSV-PHWIEDVRKYAGSNIVQLLIGNKSDLSELRE 151 (201)
T ss_dssp EEEETTBHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCccccccc
Confidence 99999999999998 78998888765 6899999999999987544
No 28
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=4.3e-27 Score=172.48 Aligned_cols=123 Identities=33% Similarity=0.660 Sum_probs=108.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeee-eEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
+..+||+++|++|||||||+++|.++.+...+.++.... ....+..++..+.+++|||||++++...+..+++++|+++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 467999999999999999999999999887777777544 4556778888899999999999999988889999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccch
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.+.
T Consensus 104 ~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~ 148 (201)
T 2ew1_A 104 LTYDITCEESFRCL-PEWLREIEQYASNKVITVLVGNKIDLAERRE 148 (201)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCS
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc
Confidence 99999999999998 88999888765 5799999999999976544
No 29
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=5.9e-27 Score=171.97 Aligned_cols=123 Identities=57% Similarity=1.022 Sum_probs=105.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
...+||+++|++|||||||+++|.++.+...+.++....+...+..++..+.+.+|||||++++...+..+++++|++++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEE
Confidence 46789999999999999999999999998888888877777777888889999999999999999999899999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
|||++++.+++.+...|+..+....++.|+++|+||+|+.+..
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 145 (207)
T 2fv8_A 103 CFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDE 145 (207)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCH
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccc
Confidence 9999999999998678999888877789999999999997653
No 30
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=2.4e-27 Score=172.48 Aligned_cols=125 Identities=30% Similarity=0.485 Sum_probs=108.0
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 030525 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (175)
Q Consensus 1 m~~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 80 (175)
|...+.+||+++|++|||||||+++|.++.+...+.++....+...+..++..+.+.+||+||+++ ...+..+++.+|+
T Consensus 23 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ 101 (196)
T 2atv_A 23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEG 101 (196)
T ss_dssp ----CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSE
T ss_pred cCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCE
Confidence 455678999999999999999999999999988888888887777788899999999999999988 6677788999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCcccch
Q 030525 81 FILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 81 vi~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~ 127 (175)
+++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.+.
T Consensus 102 iilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~ 149 (196)
T 2atv_A 102 FVLVYDITDRGSFEEV-LPLKNILDEIKKPKNVTLILVGNKADLDHSRQ 149 (196)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHHTTSCCCEEEEEECGGGGGGCC
T ss_pred EEEEEECcCHHHHHHH-HHHHHHHHHhhCCCCCcEEEEEECcccccccc
Confidence 9999999999999998 78888877643 5899999999999977544
No 31
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.95 E-value=4.9e-27 Score=165.45 Aligned_cols=122 Identities=34% Similarity=0.616 Sum_probs=108.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v 84 (175)
+.+||+++|++|||||||++++.++.+...+.++....+...+..++..+.+.+||+||++++...+..+++++|++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 46899999999999999999999999988888888777777788899999999999999999988888899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCcccch
Q 030525 85 FSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~ 127 (175)
||++++.+++.+ ..|...+.+.. .+.|+++|+||+|+.++++
T Consensus 82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~ 125 (167)
T 1kao_A 82 YSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDLESERE 125 (167)
T ss_dssp EETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECGGGGGGCC
T ss_pred EeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCccccccc
Confidence 999999999998 77877776543 5899999999999976544
No 32
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.95 E-value=7e-27 Score=165.24 Aligned_cols=124 Identities=34% Similarity=0.640 Sum_probs=108.0
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v 81 (175)
+.+.+||+++|++|||||||++++.++.+...+.++....+ ...+..++..+.+.+||+||++++...+..+++++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 35689999999999999999999999988877777765544 45667788899999999999999998888999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccch
Q 030525 82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
++|||++++.+++.+ ..|+..+.... +++|+++|+||+|+.+++.
T Consensus 83 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~ 128 (170)
T 1r2q_A 83 IVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLANKRA 128 (170)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCccccc
Confidence 999999999999998 78988887664 6899999999999976543
No 33
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.95 E-value=5.7e-27 Score=165.57 Aligned_cols=123 Identities=37% Similarity=0.625 Sum_probs=107.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeee-eEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
+..+||+++|++|||||||++++.++.+...+.++.... ....+..++..+.+.+||+||++++......+++++|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 568999999999999999999999998887777776544 4556777888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
+|||++++.+++.+ ..|+..+....++.|+++|+||+|+.+.+.
T Consensus 83 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~~~ 126 (168)
T 1z2a_A 83 LVFSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDLLDDSC 126 (168)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHHCSCCEEEEEECGGGGGGCS
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccCcccc
Confidence 99999999999998 789888876657899999999999976543
No 34
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.95 E-value=1.6e-26 Score=163.51 Aligned_cols=124 Identities=29% Similarity=0.619 Sum_probs=109.2
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v 81 (175)
..+.+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++....+.+|||||++++......+++++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 35679999999999999999999999998877777775554 45667788889999999999999999988999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccch
Q 030525 82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
++|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.++
T Consensus 83 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~ 128 (170)
T 1z0j_A 83 IIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDLTDVRE 128 (170)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHSCTTSEEEEEEECTTCGGGCC
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECCccccccc
Confidence 999999999999998 88998888764 6899999999999986544
No 35
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.95 E-value=2.3e-26 Score=166.27 Aligned_cols=123 Identities=33% Similarity=0.671 Sum_probs=108.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
+..+||+++|++|||||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||+||++++...+..+++++|+++
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 99 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL 99 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence 4579999999999999999999999998777777765544 345667888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccch
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.+.
T Consensus 100 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~ 144 (189)
T 2gf9_A 100 LMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCDLEDERV 144 (189)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccccccC
Confidence 99999999999998 88998888765 6899999999999976543
No 36
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.95 E-value=1.6e-26 Score=165.37 Aligned_cols=123 Identities=37% Similarity=0.644 Sum_probs=107.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
...+||+++|++|||||||++++..+.+...+.++....+ ...+..++..+.+.+||+||++++...+..+++.+|+++
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 89 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 89 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEE
Confidence 4679999999999999999999999988877767665443 456677888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccch
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+.
T Consensus 90 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~ 134 (181)
T 2efe_B 90 IVFDVTNQASFERA-KKWVQELQAQGNPNMVMALAGNKSDLLDARK 134 (181)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCccccccc
Confidence 99999999999998 88998888765 6899999999999976543
No 37
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.95 E-value=9.1e-27 Score=166.11 Aligned_cols=124 Identities=31% Similarity=0.648 Sum_probs=108.7
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v 81 (175)
.+..+||+++|++|||||||++++.++.+...+.++....+ ...+..++..+.+.+||+||++++...+..+++++|++
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence 35689999999999999999999999998877777775443 45667788889999999999999998888999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccch
Q 030525 82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+++.
T Consensus 92 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 137 (179)
T 1z0f_A 92 LMVYDITRRSTYNHL-SSWLTDARNLTNPNTVIILIGNKADLEAQRD 137 (179)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC
T ss_pred EEEEeCcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc
Confidence 999999999999998 88998887766 6899999999999976544
No 38
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.95 E-value=8.3e-27 Score=170.25 Aligned_cols=123 Identities=34% Similarity=0.625 Sum_probs=111.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
.+.+||+|+|++|||||||++++.++.+...+.++....+...+..++..+.+.+||+||++++...+..+++.+|++++
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 91 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 91 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEE
Confidence 35789999999999999999999999998888888888877778889988999999999999999888899999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCcccch
Q 030525 84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~ 127 (175)
|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.+.
T Consensus 92 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~ 136 (206)
T 2bov_A 92 VFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ 136 (206)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHHHTTCSCCCEEEEEECTTCGGGCC
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEeccCcccccc
Confidence 9999999999998 88988887765 3899999999999987554
No 39
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.95 E-value=9.8e-27 Score=168.58 Aligned_cols=123 Identities=30% Similarity=0.636 Sum_probs=104.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
...+||+++|++|||||||+++|.++.+...+.++....+ ...+..++..+.+++||+||++++...+..+++++|+++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 98 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence 4689999999999999999999999998777677665444 456778888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccch
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.+.
T Consensus 99 ~v~d~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~ 143 (191)
T 2a5j_A 99 LVYDITRRETFNHL-TSWLEDARQHSSSNMVIMLIGNKSDLESRRD 143 (191)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccCCccc
Confidence 99999999999998 78998887764 6899999999999976544
No 40
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.95 E-value=1.3e-26 Score=166.82 Aligned_cols=120 Identities=35% Similarity=0.610 Sum_probs=106.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
++.+||+++|++|||||||+++|.++.+...+.+++.+.+...+..++..+.+++||+||++++...+..+++.+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 57899999999999999999999999998888888888788888889999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCcc
Q 030525 84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRD 124 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~ 124 (175)
|||++++.+++.+ ..|...+.... .+.|+++|+||+|+.+
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 123 (189)
T 4dsu_A 82 VFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKCDLPS 123 (189)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHHHTTCSCCCEEEEEECTTSSS
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECccCcc
Confidence 9999999999998 88888887654 5899999999999974
No 41
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.95 E-value=1.5e-26 Score=167.61 Aligned_cols=123 Identities=35% Similarity=0.711 Sum_probs=108.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeee-eEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
+..+||+++|++|||||||+++|.++.+...+.++.... ....+..++..+.+.+||+||++++...+..+++.+|+++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 457899999999999999999999999888777777544 4456778888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccch
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.+.
T Consensus 94 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~ 138 (196)
T 3tkl_A 94 VVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKKV 138 (196)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccccccc
Confidence 99999999999998 88998887765 5899999999999976654
No 42
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.1e-26 Score=172.40 Aligned_cols=124 Identities=34% Similarity=0.599 Sum_probs=102.1
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v 81 (175)
.+..+||+|+|++|||||||+++|.++.+...+.++....+ ...+..++..+.+.+|||||++++...+..+++.+|++
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 89 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA 89 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence 35679999999999999999999999998877777765544 45677888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccch
Q 030525 82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.+.
T Consensus 90 ilV~D~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~ 135 (223)
T 3cpj_B 90 LIVYDISKSSSYENC-NHWLSELRENADDNVAVGLIGNKSDLAHLRA 135 (223)
T ss_dssp EEEEC-CCHHHHHHH-HHHHHHHHHHCC--CEEEEEECCGGGGGGCC
T ss_pred EEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccc
Confidence 999999999999998 88998887765 5899999999999976544
No 43
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.95 E-value=1.3e-26 Score=164.86 Aligned_cols=123 Identities=25% Similarity=0.359 Sum_probs=94.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCccc--ccccccccccCccEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED--YNRLRPLSYRGADVF 81 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~--~~~~~~~~~~~~d~v 81 (175)
.+.+||+++|++|||||||+++|.+..+...+.+...+.+...+..++..+.+.+||+||++. +......+++.+|++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 467999999999999999999999988765444333444566677888889999999999987 556667788999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCcccch
Q 030525 82 ILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~ 127 (175)
++|||++++.+++.+ ..|...+.+.. .+.|+++|+||+|+.+.+.
T Consensus 82 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~ 128 (175)
T 2nzj_A 82 VIVYSIADRGSFESA-SELRIQLRRTHQADHVPIILVGNKADLARCRE 128 (175)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHCC----CCEEEEEECTTCTTTCC
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhhccCCCCEEEEEEChhhccccc
Confidence 999999999999998 78888887653 5899999999999976554
No 44
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.95 E-value=2.1e-26 Score=168.10 Aligned_cols=124 Identities=31% Similarity=0.651 Sum_probs=108.7
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v 81 (175)
.+..+||+++|++|||||||+++|.++.+...+.++.+..+ ...+..++..+.+.+|||||++++...+..+++++|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 84 (203)
T 1zbd_A 5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF 84 (203)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence 35679999999999999999999999998877777775444 45667788889999999999999998888999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccch
Q 030525 82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.+.
T Consensus 85 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~ 130 (203)
T 1zbd_A 85 ILMYDITNEESFNAV-QDWSTQIKTYSWDNAQVLLVGNKCDMEDERV 130 (203)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHSCSSCEEEEEEECTTCTTSCC
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccCcccc
Confidence 999999999999998 88998888765 6899999999999976543
No 45
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.95 E-value=1.2e-26 Score=163.84 Aligned_cols=120 Identities=25% Similarity=0.370 Sum_probs=83.9
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~ 85 (175)
.+||+++|++|||||||++++.+..+.. ..++.+..+...+..++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccC-CCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence 5899999999999999999999766543 344455566667788999999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCcccch
Q 030525 86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~ 127 (175)
|++++.+++.+ ..|+..+.+.. ++.|+++|+||+|+.+++.
T Consensus 81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 123 (166)
T 3q72_A 81 SVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKSDLVRSRE 123 (166)
T ss_dssp ETTCHHHHHHH-HHHHHHHHHCC---CCCEEEEEECTTCCSSCC
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEeccccccccc
Confidence 99999999998 78888877653 5899999999999986654
No 46
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.95 E-value=6.8e-27 Score=167.86 Aligned_cols=123 Identities=34% Similarity=0.625 Sum_probs=110.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
.+.+||+++|++|||||||++++.++.+...+.++....+...+..++..+.+.+||+||++++...+..+++.+|++++
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 95 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEE
Confidence 35799999999999999999999999998888888888887778888888999999999999998888899999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCcccch
Q 030525 84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~ 127 (175)
|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.+.
T Consensus 96 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~ 140 (187)
T 2a9k_A 96 VFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ 140 (187)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHHHHCCTTCCEEEEEECGGGGGGCC
T ss_pred EEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccCc
Confidence 9999999999998 88888877654 3899999999999976544
No 47
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.94 E-value=1.3e-26 Score=166.71 Aligned_cols=123 Identities=32% Similarity=0.589 Sum_probs=107.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeee-eEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
++.+||+++|++|||||||++++.++.+...+.++.... ....+..++..+.+.+||+||++++...+..+++++|+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 467999999999999999999999999887777776544 4556778888899999999999999988889999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccch
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.+.
T Consensus 88 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 132 (186)
T 2bme_A 88 LVYDITSRETYNAL-TNWLTDARMLASQNIVIILCGNKKDLDADRE 132 (186)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc
Confidence 99999999999998 88988887654 6899999999999976544
No 48
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.94 E-value=2.6e-26 Score=162.29 Aligned_cols=120 Identities=33% Similarity=0.640 Sum_probs=106.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
+.+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++++...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 468999999999999999999999998877777775554 4567778888999999999999999988899999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCccc
Q 030525 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~ 125 (175)
|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 82 VYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDXLQE 123 (170)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGS
T ss_pred EEecCChHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCCcccc
Confidence 9999999999998 88988887665 68999999999999765
No 49
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.94 E-value=1.8e-26 Score=166.82 Aligned_cols=123 Identities=33% Similarity=0.629 Sum_probs=106.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeee-eEEEEEECCeEEEEEEEeCCCccccc-ccccccccCccEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYN-RLRPLSYRGADVF 81 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~-~~~~~~~~~~d~v 81 (175)
.+.+||+++|++|||||||+++|+++.+...+.++.... ....+..++..+.+.+||+||++++. ..+..+++++|++
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i 97 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV 97 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence 457999999999999999999999999887777776544 45567788888999999999999887 7788899999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCcccch
Q 030525 82 ILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~ 127 (175)
++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.+.
T Consensus 98 ilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~ 144 (189)
T 1z06_A 98 VFVYDMTNMASFHSL-PAWIEECKQHLLANDIPRILVGNKCDLRSAIQ 144 (189)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHCCCSCCCEEEEEECTTCGGGCC
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccce
Confidence 999999999999998 78988887663 5899999999999976544
No 50
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=4e-26 Score=163.16 Aligned_cols=124 Identities=35% Similarity=0.689 Sum_probs=99.5
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcCCCC-CCCCCCeeeeeE-EEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~~~~-~~~~~t~~~~~~-~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 80 (175)
.+..+||+++|++|||||||+++|.++.+. ..+.++....+. ..+..++..+.+.+||+||++++...+..+++++|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 356899999999999999999999998885 355666655544 345678888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccch
Q 030525 81 FILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 81 vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
+++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+++.
T Consensus 87 ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~ 133 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVDSAHERV 133 (180)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECCSTTSCCC
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccCcccc
Confidence 9999999999999998 88998888766 6899999999999986543
No 51
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.94 E-value=1.7e-26 Score=163.55 Aligned_cols=121 Identities=26% Similarity=0.409 Sum_probs=91.6
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCe-eeeeEEEEEECCeEEEEEEEeCCCcccccc-cccccccCccEEEE
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNR-LRPLSYRGADVFIL 83 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-~~~~~~~~~d~vi~ 83 (175)
.+||+++|++|||||||+++|.+..+.....++. .+.+...+..++..+.+.+||+||++++.. .+..+++++|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 5899999999999999999999776654444433 455666777899999999999999998876 66777899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCC--CCcEEEEEeCCCCcccch
Q 030525 84 AFSLISKASYENVAKKWIPELRHYAP--GVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~ 127 (175)
|||++++.+++.+ ..|+..+..... +.|+++|+||+|+.+.+.
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 126 (169)
T 3q85_A 82 VFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLARSRE 126 (169)
T ss_dssp EEETTCHHHHHTH-HHHHHHHHHHSTTSCCCEEEEEECTTCGGGCC
T ss_pred EEECCChHHHHHH-HHHHHHHHhcccCCCCCEEEEeeCcchhhccc
Confidence 9999999999999 888888876653 899999999999986554
No 52
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=1.9e-26 Score=167.32 Aligned_cols=123 Identities=28% Similarity=0.596 Sum_probs=108.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
.+.+||+++|++|||||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||+||++++...+..+++.+|+++
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV 100 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence 4689999999999999999999999998777777775554 445667778899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccch
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+++.
T Consensus 101 lV~d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~ 145 (192)
T 2fg5_A 101 IVYDITKQDSFYTL-KKWVKELKEHGPENIVMAIAGNKCDLSDIRE 145 (192)
T ss_dssp EEEETTCTHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC
T ss_pred EEEeCCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccc
Confidence 99999999999998 88999888765 5899999999999976443
No 53
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=1e-26 Score=164.73 Aligned_cols=122 Identities=29% Similarity=0.527 Sum_probs=106.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v 84 (175)
..+||+++|++|||||||++++.++.+...+.++....+...+..++..+.+.+|||||++++...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 57899999999999999999999999887777877777777777888889999999999999988888899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCcccch
Q 030525 85 FSLISKASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~ 127 (175)
||++++.+++.+ ..|+..+.+.. ++.|+++|+||+|+.+.+.
T Consensus 82 ~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~ 126 (172)
T 2erx_A 82 YSITSRQSLEEL-KPIYEQICEIKGDVESIPIMLVGNKCDESPSRE 126 (172)
T ss_dssp EETTCHHHHHTT-HHHHHHHHHHHC---CCCEEEEEECGGGGGGCC
T ss_pred EECcCHHHHHHH-HHHHHHHHHHhCCCCCCCEEEEEEccccccccc
Confidence 999999999988 77777766543 5799999999999976554
No 54
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.94 E-value=3.3e-26 Score=165.83 Aligned_cols=124 Identities=34% Similarity=0.579 Sum_probs=107.9
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v 81 (175)
.+..+||+|+|++|||||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||+||++++...+..+++++|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 101 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA 101 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 34679999999999999999999999998877777765444 45667788889999999999999999888999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccch
Q 030525 82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.+.
T Consensus 102 i~v~D~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~ 147 (193)
T 2oil_A 102 LLVFDLTKHQTYAVV-ERWLKELYDHAEATIVVMLVGNKSDLSQARE 147 (193)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHTTSCTTCEEEEEEECGGGGGGCC
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECCCcccccc
Confidence 999999999999998 78998887665 5899999999999976543
No 55
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.94 E-value=9.1e-27 Score=169.09 Aligned_cols=123 Identities=31% Similarity=0.576 Sum_probs=101.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeee-eeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
+..+||+++|++|||||||+++|.++.+...+.++... .....+..++..+.+.+||+||++++...+..+++++|+++
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 103 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII 103 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 46789999999999999999999999887776777643 44556778888899999999999999888889999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccch
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.+.
T Consensus 104 lV~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~ 148 (192)
T 2il1_A 104 LVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDRE 148 (192)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc
Confidence 99999999999998 88998888766 5899999999999976554
No 56
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.94 E-value=2.1e-26 Score=164.23 Aligned_cols=122 Identities=34% Similarity=0.594 Sum_probs=107.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeee-eeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
+.+||+++|++|||||||+++++++.+...+.++... .....+..++..+.+.+|||||++++...+..+++++|++++
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~ 92 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV 92 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 5699999999999999999999999888777777654 445667788888999999999999999999899999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccch
Q 030525 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+++.
T Consensus 93 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~ 136 (179)
T 2y8e_A 93 VYDITNTNSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ 136 (179)
T ss_dssp EEETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECGGGGGGCC
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCcccccCc
Confidence 9999999999998 88888877654 5899999999999976544
No 57
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.94 E-value=3e-27 Score=172.70 Aligned_cols=122 Identities=32% Similarity=0.458 Sum_probs=77.3
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHhhcC--CCCCCCCCCee-eeeEEEEEECCe--EEEEEEEeCCCccccccccccccc
Q 030525 2 SASRFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVF-DNFSANVVVDGS--TVNLGLWDTAGQEDYNRLRPLSYR 76 (175)
Q Consensus 2 ~~~~~~ki~v~G~~~~GKTsli~~l~~~--~~~~~~~~t~~-~~~~~~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~ 76 (175)
.....+||+++|++|||||||+++|.++ .+...+.++++ +.....+..++. .+.+.+|||||++++...+..+++
T Consensus 16 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 95 (208)
T 2yc2_C 16 TATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWN 95 (208)
T ss_dssp SEEEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCC
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHh
Confidence 3456789999999999999999999998 78777777775 445566777776 899999999999999999999999
Q ss_pred CccEEEEEEECCChhhHHHHHHHHHHHHhhcCC----CCcEEEEEeCCCCcc
Q 030525 77 GADVFILAFSLISKASYENVAKKWIPELRHYAP----GVPIILVGTKLDLRD 124 (175)
Q Consensus 77 ~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~p~ilv~nK~Dl~~ 124 (175)
++|++++|||++++.+++.+ ..|+..+..... +.|+++|+||+|+.+
T Consensus 96 ~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 96 GVYYAILVFDVSSMESFESC-KAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp CCCEEEEEEETTCHHHHHHH-HHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred hCcEEEEEEECCCHHHHHHH-HHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 99999999999999999998 789998887653 899999999999987
No 58
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.94 E-value=5e-26 Score=162.28 Aligned_cols=120 Identities=37% Similarity=0.715 Sum_probs=102.7
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v 81 (175)
.+..+||+++|++|||||||++++.++.+...+.++....+ ...+..++..+.+.+||+||++++...+..+++++|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 35689999999999999999999999998877777775544 55677888889999999999999999888999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcC-----CCCcEEEEEeCCCCc
Q 030525 82 ILAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLDLR 123 (175)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~ 123 (175)
++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.
T Consensus 84 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 84 LLTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGNKIDIS 129 (177)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence 999999999999998 88888876543 578999999999996
No 59
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.94 E-value=9.2e-27 Score=169.79 Aligned_cols=123 Identities=27% Similarity=0.423 Sum_probs=100.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCe-eeeeEEEEEECCeEEEEEEEeCCCcccccc-cccccccCccEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNR-LRPLSYRGADVF 81 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-~~~~~~~~~d~v 81 (175)
...+||+++|++|||||||+++|.+........+++ .+.+...+.+++..+.+.+||++|++++.. ++..+++++|++
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ 100 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAF 100 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEE
Confidence 467899999999999999999997544332223333 445566777899999999999999988765 667788999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCcccch
Q 030525 82 ILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~ 127 (175)
++|||++++.+|+.+ ..|+..+.... .++|+++|+||+|+.+.+.
T Consensus 101 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~ 147 (195)
T 3cbq_A 101 LIVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLARSRE 147 (195)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHSTTSCCCEEEEEECTTCTTTCC
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEeechhccccCC
Confidence 999999999999998 88998887654 4899999999999976554
No 60
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.94 E-value=1.2e-26 Score=169.50 Aligned_cols=124 Identities=33% Similarity=0.618 Sum_probs=98.9
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeee-eEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v 81 (175)
.+..+||+++|++|||||||+++|.++.+...+.++.... ....+..++..+.+.+||+||++++...+..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 3568999999999999999999999998877777776544 345667788889999999999999999898999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccch
Q 030525 82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.+.
T Consensus 102 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 147 (200)
T 2o52_A 102 LLVYDITSRETYNSL-AAWLTDARTLASPNIVVILCGNKKDLDPERE 147 (200)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHTCTTCEEEEEEECGGGGGGCC
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCCcccccc
Confidence 999999999999998 88988887654 6899999999999976544
No 61
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.94 E-value=5.7e-27 Score=167.33 Aligned_cols=124 Identities=30% Similarity=0.533 Sum_probs=104.8
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCee-eeeEEEEEECC-eEEEEEEEeCCCcccccccccccccCccE
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDG-STVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~-~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 80 (175)
..+.+||+++|++|||||||+++|.++.+...+.++.. +.....+..++ ..+.+++||+||++++...+..+++++|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 45789999999999999999999999888766666664 44556667765 67899999999999999998899999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcC---CCCc-EEEEEeCCCCcccch
Q 030525 81 FILAFSLISKASYENVAKKWIPELRHYA---PGVP-IILVGTKLDLRDDKQ 127 (175)
Q Consensus 81 vi~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p-~ilv~nK~Dl~~~~~ 127 (175)
+++|||++++.+++.+ ..|+..+.... .+.| +++|+||+|+.+.+.
T Consensus 83 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~ 132 (178)
T 2hxs_A 83 VLLVYDITNYQSFENL-EDWYTVVKKVSEESETQPLVALVGNKIDLEHMRT 132 (178)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCS
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHHhcccCCCCeEEEEEEccccccccc
Confidence 9999999999999998 78988887643 2455 899999999976544
No 62
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.94 E-value=3.1e-26 Score=162.07 Aligned_cols=118 Identities=31% Similarity=0.688 Sum_probs=99.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
..+||+++|++|||||||++++.++.+...+.++....+ ...+..++..+.+.+||+||++++...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 578999999999999999999999998777777765444 4566677888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCc
Q 030525 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~ 123 (175)
|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.
T Consensus 82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1g16_A 82 VYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDME 121 (170)
T ss_dssp EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCC
Confidence 9999999999998 88998887765 589999999999994
No 63
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=4.1e-26 Score=168.67 Aligned_cols=123 Identities=24% Similarity=0.416 Sum_probs=99.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcC--CCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCccc-ccccccccccCccE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED-YNRLRPLSYRGADV 80 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~-~~~~~~~~~~~~d~ 80 (175)
...+||+++|++|||||||+++|++. .+...+.++..+.+.+.+.+++..+.+.+|||+|++. +..+...+++.+|+
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 45689999999999999999999964 3444444433455667778899999999999999876 45566778899999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCcccch
Q 030525 81 FILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 81 vi~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~ 127 (175)
+++|||++++.+|+.+ ..|...+.+.. .++|++|||||+|+.+.+.
T Consensus 115 ~ilVydvt~~~sf~~~-~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~ 162 (211)
T 2g3y_A 115 YLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRCRE 162 (211)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHTSGGGTTSCEEEEEECTTCGGGCC
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHHhCCCCCcEEEEEEChHHhcCce
Confidence 9999999999999998 78888776542 5799999999999976554
No 64
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.94 E-value=2.8e-26 Score=163.97 Aligned_cols=122 Identities=31% Similarity=0.649 Sum_probs=91.4
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeee-eEEEEEEC-CeEEEEEEEeCCCcccccccccccccCccE
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 80 (175)
.+..+||+++|++|||||||++++.++.+...+.++.... ....+..+ +..+.+.+||+||++++...+..+++++|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 3568999999999999999999999999887777776433 44555555 566899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcC-----CCCcEEEEEeCCCCccc
Q 030525 81 FILAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLDLRDD 125 (175)
Q Consensus 81 vi~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~ 125 (175)
+++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.
T Consensus 85 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 133 (182)
T 1ky3_A 85 CVLVYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFVILGNKIDAEES 133 (182)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG
T ss_pred EEEEEECCChHHHHHH-HHHHHHHHHHhcccCcCCCcEEEEEECCccccc
Confidence 9999999999999998 88888776543 57999999999999643
No 65
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.94 E-value=5.9e-26 Score=164.86 Aligned_cols=120 Identities=32% Similarity=0.577 Sum_probs=103.0
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeE--------------------------
Q 030525 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGST-------------------------- 53 (175)
Q Consensus 1 m~~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~-------------------------- 53 (175)
|..+..+||+++|++|||||||+++|++..+...+.++....+ ...+..++..
T Consensus 2 m~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (208)
T 3clv_A 2 MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITN 81 (208)
T ss_dssp CCCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC----------------------------
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccc
Confidence 7778899999999999999999999999998877777775444 3445555544
Q ss_pred -----------EEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 030525 54 -----------VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL 122 (175)
Q Consensus 54 -----------~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 122 (175)
..+.+||+||++++...+..+++.+|++++|||++++.+++.+ ..|+..+..... .|+++|+||+|+
T Consensus 82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~-~~~~~~i~~~~~-~piilv~NK~D~ 159 (208)
T 3clv_A 82 QHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRA-KTWVNQLKISSN-YIIILVANKIDK 159 (208)
T ss_dssp ---CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHSC-CEEEEEEECTTC
T ss_pred ccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHH-HHHHHHHHhhCC-CcEEEEEECCCc
Confidence 8899999999999999888999999999999999999999998 889988876543 999999999993
No 66
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.94 E-value=1.1e-25 Score=162.51 Aligned_cols=119 Identities=34% Similarity=0.608 Sum_probs=97.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v 84 (175)
+.+||+++|++|||||||+++|.++.+...+.++....+...+..++..+.+.+||+||++++...+..+++.+|++++|
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 99 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 99 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEEE
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEE
Confidence 56899999999999999999999998888888888777777788888899999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCcc
Q 030525 85 FSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRD 124 (175)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~ 124 (175)
||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+
T Consensus 100 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 100 FAINNSKSFADI-NLYREQIKRVKDSDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp EETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred EECcCHHHHHHH-HHHHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence 999999999998 88988887654 3799999999999875
No 67
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.94 E-value=8e-26 Score=163.09 Aligned_cols=123 Identities=37% Similarity=0.622 Sum_probs=105.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeE--EEEEECCe---------EEEEEEEeCCCccccccccc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS--ANVVVDGS---------TVNLGLWDTAGQEDYNRLRP 72 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~---------~~~~~~~D~~G~~~~~~~~~ 72 (175)
+..+||+++|++|||||||+++|.++.+...+.++....+. ..+..++. .+.+.+||+||++++...+.
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 88 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTT 88 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHH
Confidence 45799999999999999999999999887777777765554 34555555 78999999999999988888
Q ss_pred ccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCcccch
Q 030525 73 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 73 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~ 127 (175)
.+++++|++++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+++.
T Consensus 89 ~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~ 144 (195)
T 3bc1_A 89 AFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPDIVLCGNKSDLEDQRA 144 (195)
T ss_dssp HTTTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSSSSSCCEEEEEECTTCGGGCC
T ss_pred HHHcCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc
Confidence 999999999999999999999998 78998887655 5899999999999976543
No 68
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.94 E-value=6.9e-26 Score=159.22 Aligned_cols=119 Identities=34% Similarity=0.603 Sum_probs=107.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v 84 (175)
+.+||+++|++|||||||++++.++.+...+.++....+...+..++..+.+.+||+||++++...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 35899999999999999999999998888888888777777788888899999999999999988888899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCcc
Q 030525 85 FSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRD 124 (175)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~ 124 (175)
||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+
T Consensus 82 ~d~~~~~~~~~~-~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 82 FAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDLAA 122 (166)
T ss_dssp EETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred EECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEchhhhh
Confidence 999999999998 88988887654 3799999999999875
No 69
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.94 E-value=1.1e-25 Score=164.57 Aligned_cols=120 Identities=32% Similarity=0.643 Sum_probs=104.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeee-eeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
+..+||+++|++|||||||+++|.+..+...+.++... .....+..++..+.+.+||+||++++...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV 85 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEE
Confidence 56899999999999999999999999988777777644 44556677888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC-----CCCcEEEEEeCCCCcc
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLDLRD 124 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~ 124 (175)
+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+
T Consensus 86 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (207)
T 1vg8_A 86 LVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNKIDLEN 131 (207)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcccccCCCCcEEEEEECCCCcc
Confidence 99999999999998 88888776543 3789999999999973
No 70
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.94 E-value=3e-26 Score=167.13 Aligned_cols=122 Identities=35% Similarity=0.626 Sum_probs=97.6
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v 81 (175)
..+.+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++++...+..+++.+|++
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 104 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV 104 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence 35679999999999999999999999998777777765444 45677888889999999999999988888899999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCccc
Q 030525 82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125 (175)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~ 125 (175)
++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.
T Consensus 105 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~ 148 (199)
T 2p5s_A 105 LLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGNKADIRDT 148 (199)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHC---CCEEEEEECGGGHHH
T ss_pred EEEEECCChHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccccc
Confidence 999999999999998 78998888765 58999999999999753
No 71
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=1.7e-25 Score=161.77 Aligned_cols=119 Identities=33% Similarity=0.693 Sum_probs=105.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
+.+||+++|++|||||||+++|.+..+...+.++....+ ...+..++..+.+.+|||||++++...+..+++.+|++++
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 93 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL 93 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence 578999999999999999999999998877777775444 4567788889999999999999999998899999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCcc
Q 030525 84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRD 124 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~ 124 (175)
|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+
T Consensus 94 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 135 (195)
T 1x3s_A 94 VYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKEN 135 (195)
T ss_dssp EEETTCHHHHHTH-HHHHHHHTTCCSCSCCEEEEEEECTTSSS
T ss_pred EEECcCHHHHHHH-HHHHHHHHHhcCcCCCcEEEEEECCcCcc
Confidence 9999999999998 88999888765 5799999999999953
No 72
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=4.6e-27 Score=170.34 Aligned_cols=123 Identities=33% Similarity=0.643 Sum_probs=107.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeee-eEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
+..+||+++|++|||||||+++|.++.+...+.++.+.. ....+..++..+.+.+||+||++++...+..+++++|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 467899999999999999999999998877776766443 3456667777899999999999999988889999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccch
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.+.
T Consensus 101 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~ 145 (191)
T 3dz8_A 101 LMYDITNEESFNAV-QDWATQIKTYSWDNAQVILVGNKCDMEEERV 145 (191)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc
Confidence 99999999999998 78999998766 6899999999999976654
No 73
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.93 E-value=3.1e-26 Score=169.58 Aligned_cols=122 Identities=33% Similarity=0.575 Sum_probs=107.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCee-eeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
...+||+++|++|||||||+++|+.+.+...+.++.+ +........++..+.+.+|||||++++...+..+++++|+++
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 92 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAI 92 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEE
Confidence 4679999999999999999999988877766666664 344556677888999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
+|||++++.+++.+ ..|+..+....++.|+++|+||+|+.+.+
T Consensus 93 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 135 (221)
T 3gj0_A 93 IMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 135 (221)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSTTCCEEEEEECTTSSSCS
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECCcccccc
Confidence 99999999999998 88999998887899999999999997644
No 74
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.93 E-value=1.2e-26 Score=169.26 Aligned_cols=123 Identities=35% Similarity=0.711 Sum_probs=102.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeee-eEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
+..+||+++|++|||||||+++|.++.+...+.++.... ....+..++..+.+.+|||||++++...+..+++++|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 467999999999999999999999988877666666444 4456778888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccch
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.+.
T Consensus 111 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~ 155 (199)
T 3l0i_B 111 VVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKKV 155 (199)
T ss_dssp ECC-CCCSHHHHHH-HHHHHHHHSCC-CCSEEEEC-CCSSCC--CC
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhccCCCCEEEEEECccCCcccc
Confidence 99999999999999 88999988766 5899999999999976654
No 75
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=6.1e-26 Score=164.78 Aligned_cols=121 Identities=30% Similarity=0.515 Sum_probs=106.5
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
.+..+||+++|++|||||||+++|.++.+...+.++....+...+..++..+.+.+|||||++++...+..+++.+|+++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 45689999999999999999999999998877788877777777778888999999999999999888888999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCcc
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRD 124 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~ 124 (175)
+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+
T Consensus 85 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~piilv~nK~Dl~~ 128 (199)
T 2gf0_A 85 LVFSVTSKQSLEEL-GPIYKLIVQIKGSVEDIPVMLVGNKCDETQ 128 (199)
T ss_dssp EEEETTCHHHHHTT-HHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence 99999999999988 66776665542 4789999999999975
No 76
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.93 E-value=3.7e-26 Score=168.54 Aligned_cols=124 Identities=40% Similarity=0.672 Sum_probs=104.6
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCe----------EEEEEEEeCCCcccccccc
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGS----------TVNLGLWDTAGQEDYNRLR 71 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~----------~~~~~~~D~~G~~~~~~~~ 71 (175)
.+..+||+++|++|||||||+++|.++.+...+.++....+ ...+..++. .+.+++|||||++++...+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 101 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT 101 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence 35679999999999999999999999988766666665444 345555554 7899999999999998888
Q ss_pred cccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCcccch
Q 030525 72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 72 ~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~ 127 (175)
..+++++|++++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+++.
T Consensus 102 ~~~~~~~d~iilV~D~~~~~s~~~~-~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~ 158 (217)
T 2f7s_A 102 TAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDIVLIGNKADLPDQRE 158 (217)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHHH-HHHHHTCCCCCTTTCCEEEEEEECTTCGGGCC
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCcCCCCEEEEEECCccccccc
Confidence 8999999999999999999999998 88998887654 5899999999999976544
No 77
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.93 E-value=1.5e-25 Score=162.74 Aligned_cols=118 Identities=19% Similarity=0.244 Sum_probs=96.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCC-CCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
....||+|+|++|||||||+++|.++.+.. .+.+|.+... ..+ ++..+.+++|||||++++...+..+++++|++|
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~-~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 91 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV-ETF--EKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVI 91 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE-EEE--EETTEEEEEEEECCSGGGGGGGGGGCTTCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE-EEE--EeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEE
Confidence 467899999999999999999999999887 6777765332 223 344578999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC---------CCCcEEEEEeCCCCccc
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYA---------PGVPIILVGTKLDLRDD 125 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~---------~~~p~ilv~nK~Dl~~~ 125 (175)
+|||++++.+|+.+ ..|+..+.... .+.|+++|+||+|+.+.
T Consensus 92 ~v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 92 FVVDSSDHLRLCVV-KSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA 142 (199)
T ss_dssp EEEETTCGGGHHHH-HHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred EEEECCcHHHHHHH-HHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence 99999999999998 67776665431 27999999999999866
No 78
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.93 E-value=4.9e-25 Score=161.72 Aligned_cols=119 Identities=32% Similarity=0.684 Sum_probs=104.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
+..+||+++|++|||||||+++|++..+...+.++....+ ...+..++..+.+.+|||||++++...+..+++.+|+++
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 97 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII 97 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 3578999999999999999999999988777777765444 456777888899999999999999999889999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCc
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~ 123 (175)
+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.
T Consensus 98 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~ 138 (213)
T 3cph_A 98 LVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDME 138 (213)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHTTTCSEEEEEEECTTCS
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 99999999999998 88998887765 479999999999994
No 79
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.88 E-value=7.5e-28 Score=176.18 Aligned_cols=123 Identities=74% Similarity=1.269 Sum_probs=110.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
.+.+||+++|++|||||||+++|.++.+...+.+++.+.+...+..++..+.+++|||||++++...+..+++++|++++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 107 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI 107 (204)
Confidence 57899999999999999999999999988888888877777777778888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
|||++++.+++.+...|+..+....++.|+++|+||+|+.+.+
T Consensus 108 v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~ 150 (204)
T 3th5_A 108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 150 (204)
Confidence 9999999999998448998888766789999999999997654
No 80
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.93 E-value=4.7e-25 Score=160.33 Aligned_cols=123 Identities=24% Similarity=0.434 Sum_probs=96.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhc--CCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCccc-ccccccccccCccE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTS--NTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED-YNRLRPLSYRGADV 80 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~-~~~~~~~~~~~~d~ 80 (175)
...+||+++|++|||||||+++|++ ..+...+.++..+.+.+.+.+++..+.+.+|||+|++. ++.+...+++.+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 4578999999999999999999995 34454444443455566778899999999999999876 55566778899999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCcccch
Q 030525 81 FILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 81 vi~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~ 127 (175)
+++|||++++.||+.. ..|...+.+.. ++.|+++|+||+|+.+.+.
T Consensus 84 ~i~v~dv~~~~s~~~~-~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~ 131 (192)
T 2cjw_A 84 YLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRXRE 131 (192)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECTTCGGGCC
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHhhCCCCCeEEEEEechhhhcccc
Confidence 9999999999999998 78887776542 5799999999999976544
No 81
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.93 E-value=1.6e-25 Score=161.87 Aligned_cols=118 Identities=25% Similarity=0.389 Sum_probs=99.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
.+.+||+++|++|||||||+++|.++.+...+.++....+.. +.. ..+.+.+||+||++++...+..+++++|++++
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 96 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK-ITK--GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVY 96 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE-EEE--TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE-EEe--CCEEEEEEECCCCHhHHHHHHHHHccCCEEEE
Confidence 468999999999999999999999999887777777655432 333 34789999999999999888899999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCccc
Q 030525 84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDD 125 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~ 125 (175)
|||++++.+++.+ ..|+..+... ..+.|+++|+||+|+.+.
T Consensus 97 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 97 MVDAADQEKIEAS-KNELHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred EEECCCHHHHHHH-HHHHHHHHhCcccCCCCEEEEEECCCCccC
Confidence 9999999999998 6677666543 268999999999999754
No 82
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.93 E-value=1e-24 Score=156.92 Aligned_cols=118 Identities=19% Similarity=0.311 Sum_probs=97.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
++.+||+++|++|||||||++++.++. ...+.||.... ...+..++ +.+++|||||++++...+..+++++|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN-IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIW 91 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE-EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 568999999999999999999999888 55666765533 33444553 789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCcccc
Q 030525 84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~ 126 (175)
|||++++.+++.+ ..|+..+.+. ..+.|+++|+||+|+.++.
T Consensus 92 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 135 (186)
T 1ksh_A 92 VVDSADRQRMQDC-QRELQSLLVEERLAGATLLIFANKQDLPGAL 135 (186)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred EEECcCHHHHHHH-HHHHHHHHhChhcCCCcEEEEEeCccCCCCC
Confidence 9999999999998 6677666543 2589999999999997653
No 83
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.93 E-value=1.4e-24 Score=157.40 Aligned_cols=116 Identities=16% Similarity=0.296 Sum_probs=96.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
.+.+||+++|++|||||||++++.++.+. .+.++... ....+..++ +.+++|||||+++++..+..+++++|++++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~-~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHP-TSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSC-EEEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCC-CeEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 35679999999999999999999998875 34555544 345566666 789999999999999999899999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCcc
Q 030525 84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRD 124 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~ 124 (175)
|||++++.++++. ..|+..+.+. ..+.|+++|+||+|+.+
T Consensus 97 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 97 LVDAADPERFDEA-RVELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred EEECCChHHHHHH-HHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 9999999999998 7787777543 25899999999999975
No 84
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.93 E-value=7.8e-26 Score=163.67 Aligned_cols=121 Identities=28% Similarity=0.356 Sum_probs=95.4
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCC-----------CeeeeeE-EEE-EECCeEEEEEEEeCCCcccccc
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP-----------TVFDNFS-ANV-VVDGSTVNLGLWDTAGQEDYNR 69 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~-----------t~~~~~~-~~~-~~~~~~~~~~~~D~~G~~~~~~ 69 (175)
.+..+||+++|++|||||||++ ++.+.+...+.+ +.+..+. ..+ ..++..+.+++|||||++++..
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~-~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 89 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLK-WIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHH-HHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred cccccEEEEECCCCCCHHHHHH-HHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence 3568999999999999999995 555555544333 3322222 122 4567788999999999999999
Q ss_pred cccccccCccEEEEEEECC------ChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 70 LRPLSYRGADVFILAFSLI------SKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 70 ~~~~~~~~~d~vi~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
.+..+++++|++++|||++ +..+++.+ ..|+..+.....+.|+++|+||+|+.+.
T Consensus 90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l-~~~l~~~~~~~~~~piilv~NK~Dl~~~ 150 (198)
T 3t1o_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNM-RENLAEYGLTLDDVPIVIQVNKRDLPDA 150 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHH-HHHHHHTTCCTTSSCEEEEEECTTSTTC
T ss_pred HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHH-HHHHHhhccccCCCCEEEEEEchhcccc
Confidence 9999999999999999999 56778887 7888888655578999999999999754
No 85
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.93 E-value=5.7e-25 Score=160.55 Aligned_cols=116 Identities=20% Similarity=0.295 Sum_probs=90.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
.+.+||+++|++|||||||++++.++.+. .+.+|.... ...+..++ +.+++|||||+++++..+..+++++|++++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT-SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce-eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 35689999999999999999999988774 345555443 34556666 789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCcc
Q 030525 84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRD 124 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~ 124 (175)
|||++++.++++. ..|+..+.+. ..+.|+++|+||+|+.+
T Consensus 99 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 99 LVDCADHERLLES-KEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred EEECCCHHHHHHH-HHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 9999999999998 7788777553 25899999999999975
No 86
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.92 E-value=9e-25 Score=170.34 Aligned_cols=122 Identities=71% Similarity=1.251 Sum_probs=111.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
+..+||+++|++|||||||++++.++.+...+.+++.+.+...+..++..+.+++|||||++++...+..+++++|++++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 35689999999999999999999999998888888888888888889999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
|||++++.+++.+...|+..+....++.|+++|+||+|+.+.
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 274 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTC
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccc
Confidence 999999999999855899998887778999999999999764
No 87
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.92 E-value=1.2e-24 Score=157.29 Aligned_cols=118 Identities=19% Similarity=0.324 Sum_probs=97.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCC-CCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNT-FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
.+.+||+++|++|||||||+++|.++. +...+.++.. .....+..++ +.+.+|||||++++...+..+++++|+++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG-FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAII 95 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS-EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc-eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 467899999999999999999999887 5556666654 3344455554 68999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCccc
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYA----PGVPIILVGTKLDLRDD 125 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~ 125 (175)
+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.
T Consensus 96 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 141 (190)
T 2h57_A 96 FVIDSSDRLRMVVA-KEELDTLLNHPDIKHRRIPILFFANKMDLRDA 141 (190)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC
T ss_pred EEEECCCHHHHHHH-HHHHHHHHhChhhccCCCeEEEEEeCcCcccC
Confidence 99999999999998 67777665543 47999999999999754
No 88
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=5.8e-25 Score=158.62 Aligned_cols=117 Identities=18% Similarity=0.308 Sum_probs=94.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
++.+||+++|++|||||||++++.++.+. .+.+|.+.. ...+..++ +.+++|||||++++...+..+++++|++++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 89 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN-VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV 89 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS-CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 56899999999999999999999988876 445555422 33444554 789999999999999998899999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCccc
Q 030525 84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDD 125 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~ 125 (175)
|||++++.+++.. ..|+..+.+. ..+.|+++|+||+|+.+.
T Consensus 90 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (187)
T 1zj6_A 90 VVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVKEC 132 (187)
T ss_dssp EEETTCTTTHHHH-HHHHHHHHTSGGGTTCEEEEEEECTTSTTC
T ss_pred EEeCCCHHHHHHH-HHHHHHHHhchhhCCCeEEEEEECCCCcCC
Confidence 9999999999998 7787777654 268999999999999753
No 89
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.92 E-value=3.4e-25 Score=163.43 Aligned_cols=123 Identities=28% Similarity=0.522 Sum_probs=101.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEE-EEEE-CCeEEEEEEEeCCCcccccccccccccCccEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~-~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v 81 (175)
+..+||+++|++|||||||+++|+++.+...+.++....... .... ++..+.+.+|||||++++...+..+++++|++
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA 88 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence 468999999999999999999999988877666666544433 3333 34458999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccch
Q 030525 82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.+.
T Consensus 89 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 134 (218)
T 4djt_A 89 ILFFDVTSRITCQNL-ARWVKEFQAVVGNEAPIVVCANKIDIKNRQK 134 (218)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHHCSSSCEEEEEECTTCC----
T ss_pred EEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc
Confidence 999999999999998 78998888765 4699999999999976543
No 90
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.92 E-value=3.9e-25 Score=155.81 Aligned_cols=114 Identities=18% Similarity=0.280 Sum_probs=93.6
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d 86 (175)
+||+++|++|||||||++++.++.+.. +.||... ....+.. ..+.+++||+||++++...+..+++++|++++|||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 76 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF-NVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSC-CEEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCce-eEEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence 589999999999999999999888764 4555542 2233333 34789999999999998888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCccc
Q 030525 87 LISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDD 125 (175)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~ 125 (175)
++++.+++.. ..|+..+... .++.|+++|+||+|+.+.
T Consensus 77 ~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 77 SNDRERVNEA-REELMRMLAEDELRDAVLLVFANKQDLPNA 116 (164)
T ss_dssp TTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred CCCHHHHHHH-HHHHHHHHhchhhcCCeEEEEEECcCCcCC
Confidence 9999999998 6777766543 258999999999999764
No 91
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.92 E-value=3.1e-24 Score=152.02 Aligned_cols=117 Identities=16% Similarity=0.234 Sum_probs=96.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
++.+||+++|++|||||||++++.++.+.. +.|+... ....+..+ ...+.+|||||++++...+..+++++|++++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 80 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGF-NVETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY 80 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSE-EEEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCcc-ceEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 467999999999999999999999988754 4555432 23344455 4789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCccc
Q 030525 84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDD 125 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~ 125 (175)
|||++++.+++.. ..|+..+.... .+.|+++|+||+|+.+.
T Consensus 81 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (171)
T 1upt_A 81 VVDSCDRDRIGIS-KSELVAMLEEEELRKAILVVFANKQDMEQA 123 (171)
T ss_dssp EEETTCCTTHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred EEECCCHHHHHHH-HHHHHHHHhchhhCCCEEEEEEECCCCcCC
Confidence 9999999999998 66666654432 58999999999999765
No 92
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.92 E-value=9.6e-25 Score=156.79 Aligned_cols=117 Identities=19% Similarity=0.320 Sum_probs=95.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
.+.+||+++|++|||||||+++|.++.+ ..+.++.+.. ...+..++ +.+.+||+||++++...+..+++++|++++
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 94 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN-VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV 94 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSS-CEEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCcee-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 4679999999999999999999999887 3444554432 23445554 789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCccc
Q 030525 84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDD 125 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~ 125 (175)
|||++++.+++.+ ..|+..+.+. ..+.|+++|+||+|+.+.
T Consensus 95 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 137 (181)
T 2h17_A 95 VVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVKEC 137 (181)
T ss_dssp EEETTCTTTHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred EEECCCHHHHHHH-HHHHHHHHhChhhCCCeEEEEEECCCcccC
Confidence 9999999999998 6677666543 268999999999999763
No 93
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.92 E-value=1.3e-25 Score=161.93 Aligned_cols=121 Identities=26% Similarity=0.432 Sum_probs=90.9
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcC--CCCCCCCCCeeeeeE-EEEEE---CCeEEEEEEEeCCCcccccccccccccCcc
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNFS-ANVVV---DGSTVNLGLWDTAGQEDYNRLRPLSYRGAD 79 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~--~~~~~~~~t~~~~~~-~~~~~---~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 79 (175)
.+||+++|++|||||||++++.+. .+...+.+|.+..+. ..+.. ++..+.+++|||+|++++...+..++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 479999999999999999999984 555556666644432 23222 345678999999999999988888999999
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 80 VFILAFSLISK-ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 80 ~vi~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
++++|||++++ .+++.+ ..|+..+....++.|+++||||+|+.+.+.
T Consensus 82 ~~i~v~d~~~~~~s~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 129 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAM-KPWLFNIKARASSSPVILVGTHLDVSDEKQ 129 (184)
T ss_dssp EEEEEEEGGGCHHHHHTH-HHHHHHHHHHCTTCEEEEEEECGGGCCHHH
T ss_pred EEEEEEeCCcchhHHHHH-HHHHHHHHhhCCCCcEEEEEECCCcccchh
Confidence 99999999997 588888 889998877667899999999999987654
No 94
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.92 E-value=1.1e-24 Score=156.77 Aligned_cols=118 Identities=20% Similarity=0.318 Sum_probs=95.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
+..+||+++|++|||||||++++.++.+. .+.|+.+. ....+..+ .+.+++|||||+++++..+..+++++|++++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~-~~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 89 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGF-NIKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILIY 89 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTE-EEEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCe-EEEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 56899999999999999999999987653 33444332 23344555 3689999999999998888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhc-C-CCCcEEEEEeCCCCcccc
Q 030525 84 AFSLISKASYENVAKKWIPELRHY-A-PGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-~-~~~p~ilv~nK~Dl~~~~ 126 (175)
|||++++.+++.. ..|+..+.+. . .+.|+++|+||+|+.+.+
T Consensus 90 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 133 (181)
T 1fzq_A 90 VIDSADRKRFEET-GQELTELLEEEKLSCVPVLIFANKQDLLTAA 133 (181)
T ss_dssp EEETTCGGGHHHH-HHHHHHHTTCGGGTTCCEEEEEECTTSTTCC
T ss_pred EEECcCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECcCcccCC
Confidence 9999999999998 6777666433 2 589999999999997653
No 95
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.92 E-value=1.7e-24 Score=157.17 Aligned_cols=118 Identities=16% Similarity=0.271 Sum_probs=91.3
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
.++.+||+++|++|||||||++++..+.+.. +.||.. .....+..+ .+.+.+||+||++++...+..+++++|+++
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~-~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG-FNVETVEYK--NICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT-EEEEEEEET--TEEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc-eeEEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 3568999999999999999999999888753 344433 222334443 378999999999999988888999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCccc
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDD 125 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~ 125 (175)
+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.
T Consensus 102 lv~D~~~~~s~~~~-~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 102 FVVDSNDRERVQES-ADELQKMLQEDELRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp EEEETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred EEEECCCHHHHHHH-HHHHHHHhcccccCCCeEEEEEECCCCCCC
Confidence 99999999999998 77777665432 58999999999999764
No 96
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=2e-24 Score=154.86 Aligned_cols=117 Identities=16% Similarity=0.239 Sum_probs=93.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
++.+||+++|++|||||||++++.++.+ ..+.++.+.. ...+..++ ..+.+||+||++++...+..+++++|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN-VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIF 91 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC-EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 5789999999999999999999998877 3445554422 33444554 789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCccc
Q 030525 84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDD 125 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~ 125 (175)
|||++++.+++.+ ..|+..+.+. ..+.|+++|+||+|+.+.
T Consensus 92 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (183)
T 1moz_A 92 VVDSTDKDRMSTA-SKELHLMLQEEELQDAALLVFANKQDQPGA 134 (183)
T ss_dssp EEETTCTTTHHHH-HHHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred EEECCCHHHHHHH-HHHHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence 9999999999998 7777776654 268999999999999764
No 97
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.91 E-value=4.5e-24 Score=154.08 Aligned_cols=117 Identities=21% Similarity=0.254 Sum_probs=96.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
++.+||+++|++|||||||++++..+.+.. +.||... ....+..+ .+.+.+|||||++++...+..+++++|++++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~-~~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 95 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGV-NLETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVIY 95 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTC-CEEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCce-EEEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence 578999999999999999999999887754 4455432 23334444 3789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCccc
Q 030525 84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDD 125 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~ 125 (175)
|||++++.+++.. ..|+..+.... .+.|+++|+||+|+.+.
T Consensus 96 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 96 VVDSTDRDRMGVA-KHELYALLDEDELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp EEETTCCTTHHHH-HHHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred EEeCCCHHHHHHH-HHHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence 9999999999998 66666654432 58999999999999765
No 98
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.91 E-value=2.5e-24 Score=158.40 Aligned_cols=122 Identities=16% Similarity=0.125 Sum_probs=94.0
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCe-EEEEEEEeCCCcccccc-cccccccCccE
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGS-TVNLGLWDTAGQEDYNR-LRPLSYRGADV 80 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~~D~~G~~~~~~-~~~~~~~~~d~ 80 (175)
.++.+||+++|++|||||||+++|+++.+...+.++...... +..++. .+.+++|||||++++.. ++..+++++|+
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 457899999999999999999999999988776655433333 455543 58899999999999887 77788999999
Q ss_pred EEEEEECCChh-hHHHHHHHHHHHHhhc---CCCCcEEEEEeCCCCcccc
Q 030525 81 FILAFSLISKA-SYENVAKKWIPELRHY---APGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 81 vi~v~d~~~~~-s~~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~~~~ 126 (175)
+++|||+++.. ++....+.|...+... ..+.|+++|+||+|+.+.+
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 131 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 131 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcc
Confidence 99999999854 4666545666655442 2579999999999998654
No 99
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.91 E-value=1.2e-24 Score=158.32 Aligned_cols=118 Identities=17% Similarity=0.239 Sum_probs=90.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee---EEEEEE-CCeEEEEEEEeCCCcccccccc---ccccc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF---SANVVV-DGSTVNLGLWDTAGQEDYNRLR---PLSYR 76 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~~~~~D~~G~~~~~~~~---~~~~~ 76 (175)
++.+||+++|++|||||||++++.+. +... ++....+ .....+ ++..+.+++|||+|+++|.... ..+++
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 94 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR 94 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSC-CCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhc-CCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc
Confidence 46899999999999999999987764 3332 2221111 122223 3566889999999999988776 78999
Q ss_pred CccEEEEEEECCCh--hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 77 GADVFILAFSLISK--ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 77 ~~d~vi~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
++|++|+|||++++ ++++.+ ..|+..+....+++|+++||||+|+.++
T Consensus 95 ~~~~~i~v~d~~~~~~~~~~~~-~~~l~~~~~~~~~~piilv~nK~Dl~~~ 144 (196)
T 3llu_A 95 GTGALIYVIDAQDDYMEALTRL-HITVSKAYKVNPDMNFEVFIHKVDGLSD 144 (196)
T ss_dssp TCSEEEEEEETTSCCHHHHHHH-HHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred cCCEEEEEEECCCchHHHHHHH-HHHHHHHHhcCCCCcEEEEEeccccCch
Confidence 99999999999997 677776 6777777655679999999999998654
No 100
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.91 E-value=2.6e-23 Score=151.56 Aligned_cols=123 Identities=38% Similarity=0.658 Sum_probs=103.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeee-eEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
+..+||+++|++|||||||++++.+..+...+.++.+.. ....+.+++..+.+.+||++|+++++.....+++++++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 567999999999999999999999998877777776444 3556788999999999999999999888888899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccch
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
+|||+++..+++++ ..|+..+.... .+.|+++|+||+|+.+.+.
T Consensus 83 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~ 127 (199)
T 2f9l_A 83 LVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA 127 (199)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECcccccccC
Confidence 99999999999988 77888776544 5789999999999976543
No 101
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.90 E-value=5.9e-24 Score=165.24 Aligned_cols=117 Identities=26% Similarity=0.390 Sum_probs=92.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCC--CCC-CCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccc-----ccccccccc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-----NRLRPLSYR 76 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~--~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-----~~~~~~~~~ 76 (175)
..+||+++|++|||||||+++++++. +.. .+.+|....+. .+..++ .+.+++|||||++++ ...+..+++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~-~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 79 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS-HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQ 79 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE-EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE-EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhc
Confidence 56899999999999999999999873 332 23344433333 344444 588999999999988 677788899
Q ss_pred CccEEEEEEECCChhhHHHHHHHHHHHH---hhcCCCCcEEEEEeCCCCcc
Q 030525 77 GADVFILAFSLISKASYENVAKKWIPEL---RHYAPGVPIILVGTKLDLRD 124 (175)
Q Consensus 77 ~~d~vi~v~d~~~~~s~~~~~~~~~~~~---~~~~~~~p~ilv~nK~Dl~~ 124 (175)
++|++++|||++++.+++++ ..|...+ ....+++|+++|+||+|+.+
T Consensus 80 ~ad~vi~V~D~t~~~s~~~l-~~~~~~l~~l~~~~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 80 MVQVLIHVFDVESTEVLKDI-EIFAKALKQLRKYSPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp TCSEEEEEEETTCSCHHHHH-HHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred cCCEEEEEEECCChhhHHHH-HHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence 99999999999999999998 6665544 44456899999999999987
No 102
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.90 E-value=1.2e-22 Score=147.32 Aligned_cols=123 Identities=37% Similarity=0.657 Sum_probs=106.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
+..++|+++|++|||||||++++.+..+...+.++.+..+ ...+.+++..+.+++||++|++++......+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 3568999999999999999999999988877777775554 557788999999999999999999888888899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccch
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 127 (175)
+|||+++..+++++ ..|+..+.... .+.|+++++||+|+.+.+.
T Consensus 107 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~ 151 (191)
T 1oix_A 107 LVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA 151 (191)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc
Confidence 99999999999988 77888776543 5789999999999976543
No 103
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.89 E-value=7.5e-24 Score=164.89 Aligned_cols=113 Identities=14% Similarity=0.172 Sum_probs=85.2
Q ss_pred EEEEECCCCCCHHHHHHHhhcCCCCC---CCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccc---cccccccCccEE
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNTFPT---DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR---LRPLSYRGADVF 81 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~---~~~~~~~~~d~v 81 (175)
||+++|++|||||||++++.++-+.. ...||.+..+.. ++ ..+++++|||+||++|+. .+..|+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~---v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~ 76 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH---FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGAL 76 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE---EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE---Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCEE
Confidence 79999999999999999887654332 234555544432 22 348899999999999964 357899999999
Q ss_pred EEEEECCCh--hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 82 ILAFSLISK--ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 82 i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
|+|||++++ ++.+.. ..|+..+....+++|+++||||+|+.++
T Consensus 77 IlV~Ditd~~~~~~~~l-~~~l~~~~~~~~~ipillvgNK~DL~~~ 121 (331)
T 3r7w_B 77 VYVIDSQDEYINAITNL-AMIIEYAYKVNPSINIEVLIHKVDGLSE 121 (331)
T ss_dssp EEECCCSSCTTHHHHHH-HHHHHHHHHHCTTCEEEEECCCCCSSCS
T ss_pred EEEEECCchHHHHHHHH-HHHHHHHhhcCCCCcEEEEEECcccCch
Confidence 999999998 333333 3345555555678999999999999764
No 104
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.88 E-value=3.2e-22 Score=142.54 Aligned_cols=117 Identities=21% Similarity=0.246 Sum_probs=89.3
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCee-eeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v 81 (175)
.++.++|+++|++|||||||+++|.++.+...+.++.. +.....+..++. .+.+|||||++++...+..++..+|++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 82 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIV 82 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence 45789999999999999999999999888766555442 223345556664 578999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 82 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
++|||++++...+.. .++..+.. .+.|+++|+||+|+.+.
T Consensus 83 i~v~d~~~~~~~~~~--~~l~~~~~--~~~p~ilv~nK~Dl~~~ 122 (178)
T 2lkc_A 83 ILVVAADDGVMPQTV--EAINHAKA--ANVPIIVAINKMDKPEA 122 (178)
T ss_dssp EEEEETTCCCCHHHH--HHHHHHGG--GSCCEEEEEETTTSSCS
T ss_pred EEEEECCCCCcHHHH--HHHHHHHh--CCCCEEEEEECccCCcC
Confidence 999999984332222 12222322 47999999999999764
No 105
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.88 E-value=1.1e-22 Score=159.43 Aligned_cols=119 Identities=18% Similarity=0.305 Sum_probs=88.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
.+.+||+|+|++|||||||+++|.++.+... .||....+ ..+... .+.+++|||||++++...+..+++.+|++|+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~-~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEE-EEEEET--TEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEE-EEEecC--cEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 3567999999999999999999999887543 23332222 223333 4789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcccc
Q 030525 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~ 126 (175)
|||++++.+++.+...|...+.... +++|+++|+||+|+.+..
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~ 282 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 282 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc
Confidence 9999999999998444444444333 589999999999997653
No 106
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.88 E-value=2.3e-23 Score=157.92 Aligned_cols=123 Identities=19% Similarity=0.309 Sum_probs=92.3
Q ss_pred CceeEEEEECCC---------CCCHHHHHHHhhc---CCCCCCCCCCe-eeeeE-E--------------EEEECCeEEE
Q 030525 4 SRFIKCVTVGDG---------AVGKTCMLISYTS---NTFPTDYVPTV-FDNFS-A--------------NVVVDGSTVN 55 (175)
Q Consensus 4 ~~~~ki~v~G~~---------~~GKTsli~~l~~---~~~~~~~~~t~-~~~~~-~--------------~~~~~~~~~~ 55 (175)
+..+||+++|++ |||||||+++|++ +.+...+.+++ ...+. + ...+++..+.
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK 96 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------C
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEE
Confidence 467999999999 9999999999998 66766666665 22211 1 1124667889
Q ss_pred EEEEe-----------------------CCCccccccccccccc---------------------CccEEEEEEECCCh-
Q 030525 56 LGLWD-----------------------TAGQEDYNRLRPLSYR---------------------GADVFILAFSLISK- 90 (175)
Q Consensus 56 ~~~~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~vi~v~d~~~~- 90 (175)
+++|| ++|+++|..++..+++ ++|++++|||++++
T Consensus 97 l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~ 176 (255)
T 3c5h_A 97 MHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGM 176 (255)
T ss_dssp EEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC--
T ss_pred EEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCc
Confidence 99999 7788888888888887 79999999999998
Q ss_pred -hhHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCcccch
Q 030525 91 -ASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 91 -~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~ 127 (175)
.+|+.+ ..|+..+.+. ..++|+++|+||+|+.+.+.
T Consensus 177 ~~s~~~~-~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~ 215 (255)
T 3c5h_A 177 NRNFDDQ-LKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY 215 (255)
T ss_dssp --CHHHH-HHHHHHHHHHHHHTTCCEEEEEECGGGBCHHH
T ss_pred hhhHHHH-HHHHHHHHHHhccCCCCEEEEEEcccccccHH
Confidence 999998 8898887654 26899999999999976554
No 107
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1e-22 Score=147.22 Aligned_cols=115 Identities=15% Similarity=0.177 Sum_probs=87.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCC---CCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccC---
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTD---YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRG--- 77 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~--- 77 (175)
...++|+++|++|||||||++++.+..+... ..++. ..+...+.+.+|||||++.+...+..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 117 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS--------AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAK 117 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCce--------eeeecCCeEEEEECCCCchHHHHHHHHHHhhcc
Confidence 4578999999999999999999998876431 12221 112234678999999999988877777766
Q ss_pred -ccEEEEEEECC-ChhhHHHHHHHHHHHHhhc-----CCCCcEEEEEeCCCCcccch
Q 030525 78 -ADVFILAFSLI-SKASYENVAKKWIPELRHY-----APGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 78 -~d~vi~v~d~~-~~~s~~~~~~~~~~~~~~~-----~~~~p~ilv~nK~Dl~~~~~ 127 (175)
+|++++|||++ +..++... ..|+..+... ..+.|+++|+||+|+.+.+.
T Consensus 118 ~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 173 (193)
T 2ged_A 118 FVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTARP 173 (193)
T ss_dssp GEEEEEEEEETTCCHHHHHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred cCCEEEEEEECCCCchhHHHH-HHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence 89999999999 89999988 6666555432 25899999999999976654
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.87 E-value=1.2e-21 Score=161.08 Aligned_cols=117 Identities=22% Similarity=0.348 Sum_probs=95.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~ 83 (175)
.+.+||+++|.+|||||||+++|.++.+.. +.+|....+. .+.. ..+.+.+|||+|++++...+..+++++|++|+
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~~-~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~ 395 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE-TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 395 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEE-EEES--SSCEEEEEEECCCGGGSGGGGGGGTTCCEEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccceeEE-EEEe--CCEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 357899999999999999999999988654 3455443332 2333 34789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhc-C-CCCcEEEEEeCCCCccc
Q 030525 84 AFSLISKASYENVAKKWIPELRHY-A-PGVPIILVGTKLDLRDD 125 (175)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-~-~~~p~ilv~nK~Dl~~~ 125 (175)
|||++++.+|+.+ ..|+..+.+. . .++|++||+||+|+.+.
T Consensus 396 V~D~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 438 (497)
T 3lvq_E 396 VVDCADRDRIDEA-RQELHRIINDREMRDAIILIFANKQDLPDA 438 (497)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTSGGGTTCEEEEEEECCSSSSC
T ss_pred EEECcchhHHHHH-HHHHHHHhhhhhcCCCcEEEEEECCCCCcC
Confidence 9999999999999 6666665432 2 58999999999999754
No 109
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.87 E-value=1.3e-22 Score=149.61 Aligned_cols=115 Identities=14% Similarity=0.189 Sum_probs=91.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCC---CCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccC---
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT---DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRG--- 77 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~--- 77 (175)
...++|+++|++|||||||+++|.+..+.. .+.++....+ ....+.+|||||+++++..+..+++.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 81 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLKTRAK 81 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG--------GGSSCEEEECCCCGGGTHHHHHHHHHHGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe--------eCceEEEEECCCcHHHHHHHHHHHHhccc
Confidence 467899999999999999999999887654 2333332222 34578999999999998888888877
Q ss_pred -ccEEEEEEECC-ChhhHHHHHHHHHHHHhhc-----CCCCcEEEEEeCCCCcccch
Q 030525 78 -ADVFILAFSLI-SKASYENVAKKWIPELRHY-----APGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 78 -~d~vi~v~d~~-~~~s~~~~~~~~~~~~~~~-----~~~~p~ilv~nK~Dl~~~~~ 127 (175)
+|++++|||++ ++.++... ..|+..+... ..++|+++|+||+|+.+.+.
T Consensus 82 ~~~~~i~v~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 137 (218)
T 1nrj_B 82 FVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTARP 137 (218)
T ss_dssp GEEEEEEEEETTSCTTCCHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred cCCEEEEEEECCCChHHHHHH-HHHHHHHHhcccccccCCCCEEEEEEchHhcccCC
Confidence 89999999999 88899888 6666655432 35899999999999987654
No 110
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.87 E-value=4.2e-22 Score=142.22 Aligned_cols=116 Identities=22% Similarity=0.262 Sum_probs=88.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCC--CCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccc--------ccc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR--------PLS 74 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~--------~~~ 74 (175)
...||+++|++|||||||++++.+..+ ...+.+++.+.....+..++. .+.+|||||+.++.... ..+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 468999999999999999999998764 333444445555666777764 48999999987543211 135
Q ss_pred ccCccEEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCcc
Q 030525 75 YRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124 (175)
Q Consensus 75 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~ 124 (175)
++++|++++|||++++.+++. ..|+..+.+.. .++|+++|+||+|+.+
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 129 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDP--AEIWPEFIARLPAKLPITVVRNKADITG 129 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSH--HHHCHHHHHHSCTTCCEEEEEECHHHHC
T ss_pred HHhCCEEEEEEECCCCCCHHH--HHHHHHHHHhcccCCCEEEEEECccCCc
Confidence 789999999999999988774 46777666554 5799999999999964
No 111
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.86 E-value=2.9e-22 Score=149.10 Aligned_cols=122 Identities=11% Similarity=0.072 Sum_probs=83.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCC-CCCCeeeeeEEEEEECCeEEEEEEEeCCCccccc---------ccccc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN---------RLRPL 73 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~---------~~~~~ 73 (175)
+..+||+++|++|||||||+++|++..+... ...++..........++ ..+.+|||||+.... .....
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 4679999999999999999999998877422 22222222223333333 679999999983211 11123
Q ss_pred cccCccEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 74 SYRGADVFILAFSLISKASYENV-AKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 74 ~~~~~d~vi~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
++..+|++++|||++++.+++.. ...|+..+....++.|+++|+||+|+.+.+.
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 159 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDS 159 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--C
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchh
Confidence 46789999999999999887522 1467777766556899999999999976544
No 112
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.86 E-value=3.6e-21 Score=136.27 Aligned_cols=114 Identities=15% Similarity=0.157 Sum_probs=82.6
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCe-eeeeEEEEEECCeEEEEEEEeCCCcccccc------ccccccc--
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNR------LRPLSYR-- 76 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~~~~~~-- 76 (175)
.++|+++|++|||||||++++.+..+.....++. .+.....+..++ ..+++|||||+.++.. +...+++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 5899999999999999999999876644333432 333344455555 5799999999987753 2345554
Q ss_pred CccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 77 GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 77 ~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
++|++++|+|+++.++ . ..|+..+.+ .+.|+++|+||+|+.+.+.
T Consensus 81 ~~~~~i~v~D~~~~~~---~-~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~ 125 (165)
T 2wji_A 81 KPDLVVNIVDATALER---N-LYLTLQLME--MGANLLLALNKMDLAKSLG 125 (165)
T ss_dssp CCSEEEEEEETTCHHH---H-HHHHHHHHH--TTCCEEEEEECHHHHHHTT
T ss_pred CCCEEEEEecCCchhH---h-HHHHHHHHh--cCCCEEEEEEchHhccccC
Confidence 8999999999987543 3 456666655 3799999999999976544
No 113
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.85 E-value=4.7e-21 Score=134.22 Aligned_cols=114 Identities=25% Similarity=0.224 Sum_probs=79.5
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCC--CCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccc-------cccccccccC
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-------NRLRPLSYRG 77 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~~~~~~~ 77 (175)
.||+++|++|||||||++++.+..+. ....+++.+.....+..++. .+.+|||||+..+ ...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 58999999999999999999988753 33333334445555566664 7899999999873 2334456889
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 78 ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 78 ~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+.+.+
T Consensus 80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK~Dl~~~~ 124 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVATKVDDPKHE 124 (161)
T ss_dssp CSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEEECCCSGGGG
T ss_pred CCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEEECcccccch
Confidence 999999999998644432 223333333 378999999999998653
No 114
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.85 E-value=1e-21 Score=162.88 Aligned_cols=122 Identities=23% Similarity=0.316 Sum_probs=91.8
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEE---------EECCeEEEEEEEeCCCccccccccc
Q 030525 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANV---------VVDGSTVNLGLWDTAGQEDYNRLRP 72 (175)
Q Consensus 2 ~~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~---------~~~~~~~~~~~~D~~G~~~~~~~~~ 72 (175)
.....+||+++|++|||||||++++.+..+...+.++.+..+.... ..++..+.+.+||+||++.+.....
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 3456799999999999999999999999988777777765554321 1123467899999999999999998
Q ss_pred ccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 73 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 73 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
.+++++|++++|||+++. +.. ..|+..+....++.|+++|+||+|+.+.+.
T Consensus 117 ~~l~~~d~ii~V~D~s~~---~~~-~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~ 167 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD---SNK-HYWLRHIEKYGGKSPVIVVMNKIDENPSYN 167 (535)
T ss_dssp HHHHSSEEEEEEECGGGG---GGH-HHHHHHHHHHSSSCCEEEEECCTTTCTTCC
T ss_pred HHccCCcEEEEEEeCCCc---hhH-HHHHHHHHHhCCCCCEEEEEECCCcccccc
Confidence 899999999999999765 444 678888888877899999999999976544
No 115
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.85 E-value=1.3e-21 Score=141.58 Aligned_cols=118 Identities=17% Similarity=0.226 Sum_probs=81.0
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeE-EEEEECCeEEEEEEEeCCC----------cccccccc
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAG----------QEDYNRLR 71 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~D~~G----------~~~~~~~~ 71 (175)
....+||+++|++|||||||++++++..+.....++.+.... .....++ .+.+||||| ++.+....
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence 456799999999999999999999998765554444432222 2223333 589999999 66666666
Q ss_pred cccccCc---cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 72 PLSYRGA---DVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 72 ~~~~~~~---d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
..+++.+ |++++|+|++++.++... .+...+.. .+.|+++|+||+|+.+.+.
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~p~i~v~nK~Dl~~~~~ 151 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDV--QMYEFLKY--YGIPVIVIATKADKIPKGK 151 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH--TTCCEEEEEECGGGSCGGG
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCChHH
Confidence 6777666 999999999998877764 23344443 4789999999999987654
No 116
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.83 E-value=1.9e-20 Score=145.07 Aligned_cols=120 Identities=18% Similarity=0.169 Sum_probs=86.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCC--CCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccc--------cccccc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY--------NRLRPL 73 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~--------~~~~~~ 73 (175)
.+..+|+++|.+|||||||+|++++.++.. ....++..........+ ...+.+|||||..+. ......
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHHHHHH
Confidence 356789999999999999999999987742 22233333333222233 468999999998763 334456
Q ss_pred cccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 74 SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 74 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
+++++|++++|+|++++.+... ..+.+.+....++.|+++|+||+|+.+.+.
T Consensus 83 ~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~ 134 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAKYPE 134 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSSHH
T ss_pred HHhcCCEEEEEEECCCCCChHH--HHHHHHHHhhcCCCCEEEEEECcccCCchH
Confidence 7899999999999998755443 344466665545799999999999976543
No 117
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.83 E-value=1.9e-20 Score=134.58 Aligned_cols=116 Identities=16% Similarity=0.176 Sum_probs=85.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCe-eeeeEEEEEECCeEEEEEEEeCCCcccccc------ccccccc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNR------LRPLSYR 76 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~~~~~~ 76 (175)
.+.+||+++|++|||||||+++|.+..+.....+++ .+.....+..++ ..+.+|||||++++.. ....++.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYII 82 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHh
Confidence 367899999999999999999999876533333333 334444555555 6799999999988752 3444553
Q ss_pred --CccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 77 --GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 77 --~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
.+|++++|+|.++ ++.. ..|...+.. .+.|+++|+||+|+.+.+.
T Consensus 83 ~~~~~~~i~v~d~~~---~~~~-~~~~~~~~~--~~~piilv~nK~Dl~~~~~ 129 (188)
T 2wjg_A 83 NEKPDLVVNIVDATA---LERN-LYLTLQLME--MGANLLLALNKMDLAKSLG 129 (188)
T ss_dssp HHCCSEEEEEEEGGG---HHHH-HHHHHHHHT--TTCCEEEEEECHHHHHHTT
T ss_pred ccCCCEEEEEecchh---HHHH-HHHHHHHHh--cCCCEEEEEEhhhcccccc
Confidence 5999999999865 5555 567777665 4789999999999976544
No 118
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.82 E-value=2.2e-21 Score=139.53 Aligned_cols=115 Identities=18% Similarity=0.230 Sum_probs=86.1
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCC-----------cccccccccccc
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG-----------QEDYNRLRPLSY 75 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G-----------~~~~~~~~~~~~ 75 (175)
+||+++|++|||||||++++.+..+...+.++.... ...+... .+.+||||| ++.+......++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK-IIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS-CEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccce-eEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 699999999999999999999988876655544221 2222333 589999999 566666666777
Q ss_pred cC-ccEEEEEEECCChhhHHHHHHHHHHH---------HhhcC-CCCcEEEEEeCCCCcccc
Q 030525 76 RG-ADVFILAFSLISKASYENVAKKWIPE---------LRHYA-PGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 76 ~~-~d~vi~v~d~~~~~s~~~~~~~~~~~---------~~~~~-~~~p~ilv~nK~Dl~~~~ 126 (175)
++ +++++++|++.|..++.++.+.|... +.... .+.|+++|+||+|+.+.+
T Consensus 77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 138 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV 138 (190)
T ss_dssp HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH
T ss_pred HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH
Confidence 77 88888888888888888775667642 12111 479999999999997654
No 119
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.82 E-value=4.3e-20 Score=143.54 Aligned_cols=118 Identities=16% Similarity=0.139 Sum_probs=90.7
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHhhcCCCCC--CCCCCeeeeeEEEEEECCeEEEEEEEeCCCccccc----------c
Q 030525 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN----------R 69 (175)
Q Consensus 2 ~~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~----------~ 69 (175)
+++..-.|+++|.+|||||||+|+|++.++.. ....++..........+ ....+.+|||||+.++. .
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~ 84 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVE 84 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHH
Confidence 35677899999999999999999999987742 23333333333333333 14679999999986654 3
Q ss_pred cccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCc
Q 030525 70 LRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 123 (175)
Q Consensus 70 ~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 123 (175)
....+++++|++++|+|+++..+++.. ..|+..+.. .+.|+++|+||+|+.
T Consensus 85 ~~~~~l~~aD~il~VvD~~~~~~~~~~-~~~~~~l~~--~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 85 IAKQSLEEADVILFMIDATEGWRPRDE-EIYQNFIKP--LNKPVIVVINKIDKI 135 (308)
T ss_dssp HHHHHHHHCSEEEEEEETTTBSCHHHH-HHHHHHTGG--GCCCEEEEEECGGGS
T ss_pred HHHHHhhcCCEEEEEEeCCCCCCchhH-HHHHHHHHh--cCCCEEEEEECccCC
Confidence 445678899999999999999888887 777888876 379999999999997
No 120
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.81 E-value=9.1e-20 Score=138.56 Aligned_cols=119 Identities=15% Similarity=0.206 Sum_probs=86.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCC--CCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCccccccccccccc-----
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYR----- 76 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~----- 76 (175)
.+.+||+++|.+|+|||||++++++... ...+.+++.......+..++ ..+.+|||||+.++......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 3679999999999999999999998774 33444444444444555555 47999999999887766555543
Q ss_pred ----CccEEEEEEECCChhhHHHHHHHHHHHHhhcC-CC--CcEEEEEeCCCCccc
Q 030525 77 ----GADVFILAFSLISKASYENVAKKWIPELRHYA-PG--VPIILVGTKLDLRDD 125 (175)
Q Consensus 77 ----~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~--~p~ilv~nK~Dl~~~ 125 (175)
++|++++|++++... +......|++.+.... .+ .|+++|+||+|+.+.
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 789999999998655 4433356777776543 22 499999999999643
No 121
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.81 E-value=1.1e-19 Score=148.62 Aligned_cols=119 Identities=18% Similarity=0.191 Sum_probs=73.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCC--CCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccc--------ccc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR--------PLS 74 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~--------~~~ 74 (175)
..+||+++|.+|||||||+|+|.+.. +..+..+++.+.....+..++ +.+.+|||||+.++.... ..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 35799999999999999999999875 344445555666666667776 579999999987655432 347
Q ss_pred ccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 75 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
++.+|++++|+|++++.++++. +.+...+... .+.|+++|+||+|+.+.+.
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~-~~~~~~l~~l-~~~piIvV~NK~Dl~~~~~ 360 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDEL-TEIRELKAAH-PAAKFLTVANKLDRAANAD 360 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGH-HHHHHHHHHC-TTSEEEEEEECTTSCTTTH
T ss_pred cccCCEEEEEEECCCCcchhhh-HHHHHHHHhc-CCCCEEEEEECcCCCCccc
Confidence 8999999999999999887543 3333333333 2799999999999987654
No 122
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.80 E-value=2.7e-19 Score=135.82 Aligned_cols=116 Identities=17% Similarity=0.162 Sum_probs=85.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCC-CCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccc------cccc-
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR------PLSY- 75 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~------~~~~- 75 (175)
.+.+||+++|++|||||||+++|.+..+.. ++..++.......+...+ ..+.+|||||+..+.... ..++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 467899999999999999999999876532 233333333333444444 689999999998776532 4455
Q ss_pred -cCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 76 -RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 76 -~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
..+|++++|+|+++.++.. .|...+.. .+.|+++|+||+|+.+.+.
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~----~~~~~l~~--~~~pvilv~NK~Dl~~~~~ 127 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSL----YLLLEILE--MEKKVILAMTAIDEAKKTG 127 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHH----HHHHHHHT--TTCCEEEEEECHHHHHHTT
T ss_pred hcCCCEEEEEeCCCchhhHH----HHHHHHHh--cCCCEEEEEECcCCCCccc
Confidence 5899999999999876433 35555554 3799999999999976544
No 123
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.79 E-value=1.3e-19 Score=130.57 Aligned_cols=116 Identities=16% Similarity=0.136 Sum_probs=78.7
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEE-EEEECCeEEEEEEEeCCC----------cccccccc
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAG----------QEDYNRLR 71 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~~~D~~G----------~~~~~~~~ 71 (175)
.+..+||+++|++|||||||++++++..+. ...++.+..... ....+. .+.+||||| ++.+....
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLV 95 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHH
Confidence 345789999999999999999999988743 223333222222 122232 478999999 55566666
Q ss_pred cccccCc---cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 72 PLSYRGA---DVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 72 ~~~~~~~---d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
..+++.+ |++++|+|.++..+.... .+...+... +.|+++|+||+|+.++.
T Consensus 96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~p~i~v~nK~Dl~~~~ 149 (195)
T 3pqc_A 96 EDYFKNRWSLQMVFLLVDGRIPPQDSDL--MMVEWMKSL--NIPFTIVLTKMDKVKMS 149 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCGG
T ss_pred HHHHhcCcCceEEEEEecCCCCCCHHHH--HHHHHHHHc--CCCEEEEEEChhcCChH
Confidence 6666655 999999999876444332 223333332 68999999999997543
No 124
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.79 E-value=1.3e-19 Score=137.36 Aligned_cols=113 Identities=12% Similarity=0.187 Sum_probs=83.3
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCC-CCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccc----------cccccc
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR----------LRPLSY 75 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~----------~~~~~~ 75 (175)
.+|+++|++|||||||+|+|.+..... +..+++.+.....+..++. .+.+|||||...+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 489999999999999999999876532 3333444555556666664 799999999987654 334566
Q ss_pred --cCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 76 --RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 76 --~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
.++|++++|+|+++.++...+ ...+.. .+.|+++|+||+|+.+.+.
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l----~~~l~~--~~~pvilv~NK~Dl~~~~~ 127 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYL----TSQLFE--LGKPVVVALNMMDIAEHRG 127 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHH----HHHHTT--SCSCEEEEEECHHHHHHTT
T ss_pred hhCCCCEEEEEeeCCCchhHHHH----HHHHHH--cCCCEEEEEEChhcCCcCC
Confidence 899999999999986655443 333443 2789999999999876543
No 125
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.78 E-value=9e-20 Score=147.84 Aligned_cols=118 Identities=17% Similarity=0.233 Sum_probs=86.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCC--CCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcc----------cccccc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE----------DYNRLR 71 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~----------~~~~~~ 71 (175)
+..+||+++|.+|||||||+|++++..+ ..+..+++.+.....+..++. .+++|||||+. .|...+
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence 3568999999999999999999998776 344455555555666667764 58999999983 333222
Q ss_pred c-ccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 72 P-LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 72 ~-~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
. .+++++|++++|+|++++.+++.. .|...+.. .+.|+++|+||+|+.+.+.
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~--~~~~~~~~--~~~~iiiv~NK~Dl~~~~~ 303 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK--RIAGYAHE--AGKAVVIVVNKWDAVDKDE 303 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH--TTCEEEEEEECGGGSCCCT
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH--HHHHHHHH--cCCcEEEEEECccCCCcch
Confidence 2 367899999999999999888876 57777665 4799999999999976543
No 126
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.78 E-value=1.6e-19 Score=138.08 Aligned_cols=113 Identities=14% Similarity=0.180 Sum_probs=82.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCC-CCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccc------ccccccc-
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNT-FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR------LRPLSYR- 76 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~~~~~~- 76 (175)
..+||+++|++|||||||+|+|.+.. +..++..++.+. +...++. ...+++|||||+..+.. +...++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~--~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVER--KSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSC--EEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEE--EEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 46799999999999999999999865 344443333332 2233444 56799999999987753 3445664
Q ss_pred -CccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 77 -GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 77 -~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
++|++++|+|+++.++. ..|...+.. .+.|+++|+||+|+.+.+
T Consensus 79 ~~~d~vi~V~D~t~~e~~----~~~~~~l~~--~~~p~ilv~NK~Dl~~~~ 123 (272)
T 3b1v_A 79 QRADSILNVVDATNLERN----LYLTTQLIE--TGIPVTIALNMIDVLDGQ 123 (272)
T ss_dssp TCCSEEEEEEEGGGHHHH----HHHHHHHHH--TCSCEEEEEECHHHHHHT
T ss_pred CCCCEEEEEecCCchHhH----HHHHHHHHh--cCCCEEEEEEChhhCCcC
Confidence 69999999999886543 345555554 479999999999997654
No 127
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.78 E-value=9.8e-20 Score=134.41 Aligned_cols=118 Identities=14% Similarity=0.066 Sum_probs=81.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCC---CCCCCCCeeeeeEEEEEEC-CeEEEEEEEeCCCcc----------cccc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTF---PTDYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQE----------DYNR 69 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~-~~~~~~~~~D~~G~~----------~~~~ 69 (175)
...++|+++|.+|||||||+++|++..+ .....+++.... ..... .....+.+|||||.. .+..
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 104 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHIN--YFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQ 104 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEE--EEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceE--EEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHH
Confidence 4578999999999999999999998863 222222322211 22222 334679999999943 3334
Q ss_pred cccccccC---ccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 70 LRPLSYRG---ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 70 ~~~~~~~~---~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
....+++. +|++++|+|.++..+... ..|+..+.. .+.|+++|+||+|+.+.+.
T Consensus 105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~l~~--~~~p~i~v~nK~Dl~~~~~ 161 (223)
T 4dhe_A 105 LLSSYLQTRPQLCGMILMMDARRPLTELD--RRMIEWFAP--TGKPIHSLLTKCDKLTRQE 161 (223)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHGG--GCCCEEEEEECGGGSCHHH
T ss_pred HHHHHHhcCcCcCEEEEEEeCCCCCCHHH--HHHHHHHHh--cCCCEEEEEeccccCChhh
Confidence 44455544 888999999987644333 456666665 4789999999999976544
No 128
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.78 E-value=6.5e-19 Score=134.35 Aligned_cols=119 Identities=15% Similarity=0.148 Sum_probs=82.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCC--CCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccc---------
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPL--------- 73 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~--------- 73 (175)
..++|+++|.+|+|||||+|++++..+. ....+++..........+ ...+.+|||||..++......
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA--GFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEET--TEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeC--CeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 5789999999999999999999987752 223333333233333333 467999999999776543321
Q ss_pred cccCccEEEEEEECCChhhHHHHHHHHHHHHhhcC-CC--CcEEEEEeCCCCcccc
Q 030525 74 SYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PG--VPIILVGTKLDLRDDK 126 (175)
Q Consensus 74 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~--~p~ilv~nK~Dl~~~~ 126 (175)
...++|++++|+|++.. ++......|+..+.... .+ .|+++|+||+|+...+
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 13479999999999754 34444357777776543 23 6999999999997543
No 129
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.77 E-value=4.1e-19 Score=135.88 Aligned_cols=115 Identities=15% Similarity=0.177 Sum_probs=81.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCC-CCCCeeeeeEEEEEECCeEEEEEEEeCCCccccccc----------ccc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL----------RPL 73 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~----------~~~ 73 (175)
+.++|+++|++|||||||+|+|.+..+... ...++.+.....+..++ ..+.+|||||+.++... ...
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHH
Confidence 468999999999999999999998765322 22333444455555554 46789999999876632 112
Q ss_pred c--ccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 74 S--YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 74 ~--~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
+ .+.+|++++|+|+++.++... |...+... ++|+++|+||+|+.+.+.
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~~----~~~~l~~~--~~p~ivv~NK~Dl~~~~~ 129 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNLY----LTLQLLEL--GIPCIVALNMLDIAEKQN 129 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHHH----HHHHHHHH--TCCEEEEEECHHHHHHTT
T ss_pred HHhhcCCCEEEEEecCCChHHHHH----HHHHHHhc--CCCEEEEEECccchhhhh
Confidence 2 279999999999998665443 33344433 789999999999876543
No 130
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.77 E-value=1.9e-18 Score=140.14 Aligned_cols=113 Identities=22% Similarity=0.195 Sum_probs=76.4
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCC--CCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccc---------cccccccc
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY---------NRLRPLSY 75 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~---------~~~~~~~~ 75 (175)
-+|+++|.+|||||||+|+|++... ..+..+++.+.....+..++. .+++|||||.+.. ......++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 3799999999999999999998764 344445555556666667764 5899999997642 22344578
Q ss_pred cCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 76 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 76 ~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
+++|++++|+|++++.+.... .+...+.+ .+.|+++|+||+|+.+.
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~--~i~~~l~~--~~~p~ilv~NK~D~~~~ 125 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDE--SLADFLRK--STVDTILVANKAENLRE 125 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHH--HHHHHHHH--HTCCEEEEEESCCSHHH
T ss_pred HhCCEEEEEEECCCCCCHHHH--HHHHHHHH--cCCCEEEEEeCCCCccc
Confidence 999999999999876555432 22333333 26899999999998643
No 131
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.76 E-value=1.8e-18 Score=129.47 Aligned_cols=119 Identities=18% Similarity=0.095 Sum_probs=76.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCC---CeeeeeEEEEEECCeEEEEEEEeCCCcc-----------cccc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP---TVFDNFSANVVVDGSTVNLGLWDTAGQE-----------DYNR 69 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~---t~~~~~~~~~~~~~~~~~~~~~D~~G~~-----------~~~~ 69 (175)
+..+||+++|.+|||||||++++++..+.....+ ++..........++ ..+.+|||||.. .+..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHHH
Confidence 4679999999999999999999998877544333 22333344455555 468999999943 2333
Q ss_pred cccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCcccch
Q 030525 70 LRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 70 ~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~ 127 (175)
....+++++|++++|+|+++..... ..|+..+.... ...|+++|+||+|+.+.+.
T Consensus 105 ~~~~~~~~~~~~l~v~d~~~~~~~~---~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~ 162 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLGRYTEEE---HKATEKILKMFGERARSFMILIFTRKDDLGDTN 162 (239)
T ss_dssp HHHHTTTCCSEEEEEEETTCCSSHH---HHHHHHHHHHHHHHHGGGEEEEEECGGGC----
T ss_pred HHHhcCCCCcEEEEEeeCCCCCHHH---HHHHHHHHHHhhhhccceEEEEEeCCccCCccc
Confidence 3344567889999999997544322 23333332211 2469999999999876543
No 132
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.76 E-value=1.5e-18 Score=132.35 Aligned_cols=116 Identities=21% Similarity=0.116 Sum_probs=82.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCe-eeeeEEEEEECCeEEEEEEEeCCCcccccc------cccccc--
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNR------LRPLSY-- 75 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~~~~~-- 75 (175)
+.+||+++|++|||||||++++.+..+.....++. .+.....+..++. .+.+|||||+..+.. ....++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 36899999999999999999999876633333333 3444445555553 599999999987765 344455
Q ss_pred cCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 76 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 76 ~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
.++|++++|+|.++.. .. ..|...+... ...|+++|+||+|+.+.+.
T Consensus 80 ~~~d~vi~v~D~~~~~---~~-~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~ 126 (271)
T 3k53_A 80 GNADVIVDIVDSTCLM---RN-LFLTLELFEM-EVKNIILVLNKFDLLKKKG 126 (271)
T ss_dssp TCCSEEEEEEEGGGHH---HH-HHHHHHHHHT-TCCSEEEEEECHHHHHHHT
T ss_pred cCCcEEEEEecCCcch---hh-HHHHHHHHhc-CCCCEEEEEEChhcCcccc
Confidence 6899999999998764 22 2344444432 2399999999999876543
No 133
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.75 E-value=1.2e-17 Score=126.44 Aligned_cols=119 Identities=18% Similarity=0.122 Sum_probs=76.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCC-CCCCCCCC--eeeeeEEEEEECCeEEEEEEEeCCCccccccccc---------
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNT-FPTDYVPT--VFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP--------- 72 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~-~~~~~~~t--~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~--------- 72 (175)
..+||+|+|.+|||||||++++++.. +.....++ +..........++ ..+.+|||||..++.....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 57899999999999999999999876 44443443 3333344444554 5699999999876543322
Q ss_pred --ccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEe-CCCCccc
Q 030525 73 --LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGT-KLDLRDD 125 (175)
Q Consensus 73 --~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~n-K~Dl~~~ 125 (175)
.+++.+|++++|+|+++..........|+..+.......|.++|+| |+|+.+.
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~ 154 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG 154 (260)
T ss_dssp HHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC
T ss_pred HHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc
Confidence 2578999999999998632222111233333321111346665555 9999754
No 134
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.75 E-value=2.5e-18 Score=129.65 Aligned_cols=117 Identities=15% Similarity=0.082 Sum_probs=75.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCC-C--CeeeeeEEEEEECCeEEEEEEEeCCCcc--------ccccccc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYV-P--TVFDNFSANVVVDGSTVNLGLWDTAGQE--------DYNRLRP 72 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~-~--t~~~~~~~~~~~~~~~~~~~~~D~~G~~--------~~~~~~~ 72 (175)
...+||+++|.+|||||||+|++++........ + ++..........++ ..+.+|||||.. .+.....
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i~ 96 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEERG 96 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHHH
Confidence 468999999999999999999999877643322 2 22233333444454 568999999962 2222222
Q ss_pred ccc----cCccEEEEEEECCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCccc
Q 030525 73 LSY----RGADVFILAFSLISKASYENVAKKWIPELRHYA----PGVPIILVGTKLDLRDD 125 (175)
Q Consensus 73 ~~~----~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~ 125 (175)
.++ .++|++++|+|+++....+ ..+++.+.... .+.|++|++||+|+.+.
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~---~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~ 154 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLGRFTAQD---QQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGG 154 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETTBCCHHH---HHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC
T ss_pred HHHHhcCCCCCEEEEEEeCCCCCHHH---HHHHHHHHHHhChhhhccEEEEEEchHhcCCC
Confidence 233 8999999999998532222 23333333321 26899999999999753
No 135
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.74 E-value=1.7e-18 Score=139.58 Aligned_cols=117 Identities=21% Similarity=0.248 Sum_probs=83.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCC--CCCCCCeeeeeEEEEEECCeEEEEEEEeCCCccccccccc-------cc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP-------LS 74 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~-------~~ 74 (175)
+..+||+++|..|+|||||++++++..+. ....+++.+.....+...+. ..+.+|||||++++..... .+
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~~ 110 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARRV 110 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHHH
Confidence 35789999999999999999999988763 33444445555566666554 3799999999988766533 36
Q ss_pred ccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 75 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
++.+|++++|+|++.... . ..|+..+... +.|+++|+||+|+.+.+.
T Consensus 111 l~~aD~vllVvD~~~~~~---~-~~~l~~l~~~--~~piIvV~NK~Dl~~~~~ 157 (423)
T 3qq5_A 111 FYRADCGILVTDSAPTPY---E-DDVVNLFKEM--EIPFVVVVNKIDVLGEKA 157 (423)
T ss_dssp HTSCSEEEEECSSSCCHH---H-HHHHHHHHHT--TCCEEEECCCCTTTTCCC
T ss_pred HhcCCEEEEEEeCCChHH---H-HHHHHHHHhc--CCCEEEEEeCcCCCCccH
Confidence 889999999999933222 2 5677777664 799999999999987654
No 136
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.74 E-value=1.7e-18 Score=141.69 Aligned_cols=112 Identities=25% Similarity=0.328 Sum_probs=87.6
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCC--CCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcc-ccccc--------cccc
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE-DYNRL--------RPLS 74 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~-~~~~~--------~~~~ 74 (175)
.++|+++|.+|||||||+|+|.+.. +..++.+++.+.....+..++ ..+.+|||||.. ++... ...+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 4899999999999999999999865 355566666676677777776 468999999987 55432 2356
Q ss_pred ccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 75 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
++.+|++++|+|++++.+++.. + +++.+ .+.|+++|+||+|+.+.
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~-~-il~~l----~~~piivV~NK~DL~~~ 365 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDR-K-ILERI----KNKRYLVVINKVDVVEK 365 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHH-H-HHHHH----TTSSEEEEEEECSSCCC
T ss_pred hhcccEEEEEecCCCCCCHHHH-H-HHHHh----cCCCEEEEEECcccccc
Confidence 8899999999999998887765 3 33433 37899999999999753
No 137
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.74 E-value=4e-17 Score=129.15 Aligned_cols=121 Identities=18% Similarity=0.154 Sum_probs=86.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCC-CCCCCeeeeeEEEEEECCeEEEEEEEeCCCccccccc---------ccc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL---------RPL 73 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~---------~~~ 73 (175)
...++|+++|++|||||||++++.+..... ....++.......+... ...+.+|||||....... ...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 456899999999999999999999876422 22233322222333333 357999999998543211 112
Q ss_pred cccCccEEEEEEECCChh--hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 74 SYRGADVFILAFSLISKA--SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 74 ~~~~~d~vi~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
+...+|++++|+|+++.. +++.. ..|+..+.....+.|+++|+||+|+.+...
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~-~~~~~~i~~~~~~~piilV~NK~Dl~~~~~ 297 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQ-IHLFEEVHGEFKDLPFLVVINKIDVADEEN 297 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHH-HHHHHHHHHHTTTSCEEEEECCTTTCCHHH
T ss_pred HHhcCCEEEEEEeCCccccCCHHHH-HHHHHHHHHhcCCCCEEEEEECcccCChHH
Confidence 345799999999999877 67776 778888876555899999999999987544
No 138
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.74 E-value=1.8e-18 Score=140.95 Aligned_cols=117 Identities=19% Similarity=0.256 Sum_probs=85.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCC--CCCCCCCeeeeeEEEEEECCeEEEEEEEeCCC----------cccccccc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG----------QEDYNRLR 71 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G----------~~~~~~~~ 71 (175)
...+||+++|.+|+|||||++++.+... .....+++.+.....+..++. .+++||||| +++|...+
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence 4578999999999999999999997642 344445555555566666664 789999999 56665554
Q ss_pred c-ccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 72 P-LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 72 ~-~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
. .+++.+|++++|+|+++..+... ..|...+.. .+.|+++|+||+|+.+.+
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~~~--~~~~~~~~~--~~~~~ilv~NK~Dl~~~~ 322 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIEQD--KRIAGYAHE--AGKAVVIVVNKWDAVDKD 322 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHH--TTCEEEEEEECGGGSCCC
T ss_pred HHHHHhhCCEEEEEEeCCCCcCHHH--HHHHHHHHH--cCCCEEEEEEChhcCCCc
Confidence 4 36789999999999987654333 466666665 479999999999997654
No 139
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.74 E-value=4e-18 Score=138.91 Aligned_cols=116 Identities=24% Similarity=0.341 Sum_probs=80.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCC--CCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLS 74 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~~ 74 (175)
..+||+++|++|||||||+|+|.+..+ ..+..+++.+.....+..++ ..+.+|||||..++... ...+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 357999999999999999999997643 44444555555555666676 46799999997654432 2346
Q ss_pred ccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccchh
Q 030525 75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF 128 (175)
Q Consensus 75 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 128 (175)
++.+|++++|+|.+++.+... ..|++.+. +.|+++|+||+|+.+.+..
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~--~~i~~~l~----~~piivV~NK~Dl~~~~~~ 348 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD--QEIYEQVK----HRPLILVMNKIDLVEKQLI 348 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH--HHHHHHHT----TSCEEEEEECTTSSCGGGS
T ss_pred hhcCCEEEEEeccCCCCCHHH--HHHHHhcc----CCcEEEEEECCCCCcchhh
Confidence 889999999999998877665 35666665 3699999999999876553
No 140
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.73 E-value=1.5e-18 Score=140.69 Aligned_cols=114 Identities=18% Similarity=0.203 Sum_probs=73.5
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCC--CCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcc--------ccccccccccc
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE--------DYNRLRPLSYR 76 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~--------~~~~~~~~~~~ 76 (175)
.+|+++|.+|||||||+|+|.+..+. .+..+++.+.....+..+ ...+.+|||||++ .+......+++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~--~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWL--NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTC--SSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEEC--CceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 68999999999999999999987653 233333333333333233 3579999999985 44555566789
Q ss_pred CccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 77 GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 77 ~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
.+|++++|+|++++.+.... .+...+.+ .+.|+++|+||+|+.+.+
T Consensus 82 ~ad~il~vvD~~~~~~~~d~--~~~~~l~~--~~~pvilv~NK~D~~~~~ 127 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAADE--EVAKILYR--TKKPVVLAVNKLDNTEMR 127 (436)
T ss_dssp HCSEEEEEEETTTCSCHHHH--HHHHHHTT--CCSCEEEEEECCCC----
T ss_pred hCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECccCccch
Confidence 99999999999988776543 44454544 478999999999997643
No 141
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.73 E-value=2.5e-18 Score=135.23 Aligned_cols=118 Identities=22% Similarity=0.225 Sum_probs=88.1
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCC-CCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcc----ccccccccccc---Cc
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE----DYNRLRPLSYR---GA 78 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~----~~~~~~~~~~~---~~ 78 (175)
.+|+++|.+|||||||++++.+... ..++..++.......+..++ ...+.+||+||.. .+..+...+++ ++
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 3689999999999999999997654 23344444333333444443 2478999999953 33444445544 59
Q ss_pred cEEEEEEECCC---hhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCcccc
Q 030525 79 DVFILAFSLIS---KASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 79 d~vi~v~d~~~---~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~ 126 (175)
|++++|+|+++ +.+++.+ ..|..++..+. .+.|+++|+||+|+.+.+
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~-~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~ 290 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDY-LTINQELSEYNLRLTERPQIIVANKMDMPEAA 290 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHH-HHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH
T ss_pred cEEEEEEECCcccccChHHHH-HHHHHHHHHhhhhhcCCCEEEEEECccCCCCH
Confidence 99999999998 7889888 88998888765 479999999999997653
No 142
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.72 E-value=2.7e-19 Score=147.82 Aligned_cols=117 Identities=19% Similarity=0.202 Sum_probs=86.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeee-eEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
++..+|+++|.+++|||||+++|.+..+.....+++... ....+..+ ....+.+|||||+++|..++..+++.+|+++
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vI 80 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVI 80 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEE
Confidence 467899999999999999999999765543333332221 12222221 1236899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
+|+|+++....+.. +.| ..+.. .++|+++|+||+|+.+.
T Consensus 81 LVVDa~dg~~~qt~-e~l-~~~~~--~~vPiIVViNKiDl~~~ 119 (537)
T 3izy_P 81 LVVAADDGVMKQTV-ESI-QHAKD--AHVPIVLAINKCDKAEA 119 (537)
T ss_dssp EECBSSSCCCHHHH-HHH-HHHHT--TTCCEEECCBSGGGTTT
T ss_pred EEEECCCCccHHHH-HHH-HHHHH--cCCcEEEEEeccccccc
Confidence 99999987666554 333 33333 37899999999999754
No 143
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.72 E-value=5.2e-17 Score=130.41 Aligned_cols=122 Identities=16% Similarity=0.057 Sum_probs=86.9
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEE--------EEE------------ECCeEEEEEEEeC
Q 030525 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA--------NVV------------VDGSTVNLGLWDT 61 (175)
Q Consensus 2 ~~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~--------~~~------------~~~~~~~~~~~D~ 61 (175)
..+..+||+++|.+++|||||+++|.+.......... ...... .+. .......+.+|||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYA-ETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEE-EEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCcc-ccceeeccccccccceecccccccccccccccccceEEEEEC
Confidence 3467899999999999999999999975432210000 000000 000 0112378999999
Q ss_pred CCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 62 ~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
||+++|......++..+|++++|+|+++..++... ..|+..+.... ..|+++|+||+|+.+.+
T Consensus 83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt-~~~~~~~~~~~-~~~iivviNK~Dl~~~~ 145 (403)
T 3sjy_A 83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQT-REHFVALGIIG-VKNLIIVQNKVDVVSKE 145 (403)
T ss_dssp CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHH-HHHHHHHHHHT-CCCEEEEEECGGGSCHH
T ss_pred CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHH-HHHHHHHHHcC-CCCEEEEEECccccchH
Confidence 99999988888889999999999999988766665 56666665442 35899999999997654
No 144
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.71 E-value=4.3e-17 Score=136.23 Aligned_cols=122 Identities=17% Similarity=0.204 Sum_probs=86.9
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHhhcC--CCCCCC-CCCeee----------e---eEEEEEE---CCeEEEEEEEeC
Q 030525 1 MSASRFIKCVTVGDGAVGKTCMLISYTSN--TFPTDY-VPTVFD----------N---FSANVVV---DGSTVNLGLWDT 61 (175)
Q Consensus 1 m~~~~~~ki~v~G~~~~GKTsli~~l~~~--~~~~~~-~~t~~~----------~---~~~~~~~---~~~~~~~~~~D~ 61 (175)
|..++..||+++|..++|||||+++|+.. .+.... ..+..+ . ....+.. ++..+.+++|||
T Consensus 1 ~~~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDT 80 (600)
T 2ywe_A 1 MEQKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDT 80 (600)
T ss_dssp CCGGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECC
T ss_pred CCccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEEC
Confidence 55567889999999999999999999852 221110 000000 0 0111111 456789999999
Q ss_pred CCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 62 ~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
||+.+|......+++.+|++++|+|+++..+.+.. ..|..... .++|+++|+||+|+.+.+
T Consensus 81 PGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~-~~~~~a~~---~~ipiIvviNKiDl~~a~ 141 (600)
T 2ywe_A 81 PGHVDFSYEVSRALAACEGALLLIDASQGIEAQTV-ANFWKAVE---QDLVIIPVINKIDLPSAD 141 (600)
T ss_dssp CCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHH-HHHHHHHH---TTCEEEEEEECTTSTTCC
T ss_pred CCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH---CCCCEEEEEeccCccccC
Confidence 99999988878889999999999999998888777 67766554 379999999999997643
No 145
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.70 E-value=1.5e-17 Score=131.26 Aligned_cols=75 Identities=19% Similarity=0.205 Sum_probs=63.5
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEECC----------ChhhHHHHHHHHHHHHhhc--CCCCcEEEEEeC
Q 030525 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI----------SKASYENVAKKWIPELRHY--APGVPIILVGTK 119 (175)
Q Consensus 52 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK 119 (175)
..+++++|||+|+++++..+..|+++++++|+|||++ +..++++. ..|+..+.+. .+++|++|||||
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~-~~~~~~i~~~~~~~~~piiLvgNK 259 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMET-KELFDWVLKQPCFEKTSFMLFLNK 259 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHH-HHHHHHHHTCGGGSSCEEEEEEEC
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHH-HHHHHHHHhccccCCCeEEEEEEC
Confidence 5789999999999999999999999999999999998 78899998 6777776543 268999999999
Q ss_pred CCCcccch
Q 030525 120 LDLRDDKQ 127 (175)
Q Consensus 120 ~Dl~~~~~ 127 (175)
+|+.+++.
T Consensus 260 ~DL~~~k~ 267 (354)
T 2xtz_A 260 FDIFEKKV 267 (354)
T ss_dssp HHHHHHHT
T ss_pred cchhhhhc
Confidence 99976543
No 146
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.70 E-value=9.7e-18 Score=132.89 Aligned_cols=120 Identities=17% Similarity=0.215 Sum_probs=70.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcC-CCCCCCC--------CCeeeee-EEEEEECCeEEEEEEEeCCCc-------ccc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSN-TFPTDYV--------PTVFDNF-SANVVVDGSTVNLGLWDTAGQ-------EDY 67 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~-~~~~~~~--------~t~~~~~-~~~~~~~~~~~~~~~~D~~G~-------~~~ 67 (175)
..++|+|+|++|+|||||+++++.. .+...+. ++..... ...+..++....+++|||||. +.+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 4689999999999999999997654 3333322 2322222 222334566788999999998 556
Q ss_pred ccccc-------ccccCcc-----------EEEEEEECCC-hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 68 NRLRP-------LSYRGAD-----------VFILAFSLIS-KASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 68 ~~~~~-------~~~~~~d-----------~vi~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
..+.. .|++.++ +.+++|++++ ..++..+...|++.+. .++|+|+|+||+|+...+.
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~---~~~piIlV~NK~Dl~~~~e 191 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH---NKVNIVPVIAKADTLTLKE 191 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC---S-SCEEEEEECCSSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc---cCCCEEEEEECCCCCCHHH
Confidence 65554 4444433 3357777765 5666666345666553 5899999999999987654
No 147
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.70 E-value=1.7e-17 Score=129.94 Aligned_cols=75 Identities=17% Similarity=0.216 Sum_probs=63.5
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEECC----------ChhhHHHHHHHHHHHHhhc-C-CCCcEEEEEeC
Q 030525 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI----------SKASYENVAKKWIPELRHY-A-PGVPIILVGTK 119 (175)
Q Consensus 52 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~----------~~~s~~~~~~~~~~~~~~~-~-~~~p~ilv~nK 119 (175)
..+++++||++||++++..+..|+++++++|+|||++ +..++.+. ..|+..+.+. . .++|++|++||
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es-~~~~~~i~~~~~~~~~piiLv~NK 237 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTES-IAVFKDIMTNEFLKGAVKLIFLNK 237 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHH-HHHHHHHHHCGGGTTSEEEEEEEC
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHH-HHHHHHHhhhhccCCCeEEEEEEC
Confidence 3478999999999999999999999999999999998 77888888 5566555432 2 68999999999
Q ss_pred CCCcccch
Q 030525 120 LDLRDDKQ 127 (175)
Q Consensus 120 ~Dl~~~~~ 127 (175)
+|+.+++.
T Consensus 238 ~DL~~eki 245 (340)
T 4fid_A 238 MDLFEEKL 245 (340)
T ss_dssp HHHHHHHH
T ss_pred chhhhhhc
Confidence 99987654
No 148
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.70 E-value=7.8e-17 Score=127.75 Aligned_cols=115 Identities=22% Similarity=0.190 Sum_probs=81.7
Q ss_pred eE-EEEECCCCCCHHHHHHHhhcCCCC-CCCCCCeeeeeEEEEEECCeEEEEEEEeCCCccc---------ccccccccc
Q 030525 7 IK-CVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED---------YNRLRPLSY 75 (175)
Q Consensus 7 ~k-i~v~G~~~~GKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~---------~~~~~~~~~ 75 (175)
++ |+++|++|||||||+|++.+.... .+...++.+.....+.+++ ..+.+|||+|..+ +.... ..+
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~ 255 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SEA 255 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HHH
Confidence 44 999999999999999999987653 2333444455566677777 4689999999632 22222 357
Q ss_pred cCccEEEEEEECCChh--hHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCccc
Q 030525 76 RGADVFILAFSLISKA--SYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125 (175)
Q Consensus 76 ~~~d~vi~v~d~~~~~--s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~ 125 (175)
..+|++++|+|++++. +.+.. ..|...+.... .+.|+++|+||+|+.+.
T Consensus 256 ~~aD~il~VvD~s~~~~~~~~~~-~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~ 307 (364)
T 2qtf_A 256 KYSDALILVIDSTFSENLLIETL-QSSFEILREIGVSGKPILVTLNKIDKING 307 (364)
T ss_dssp GGSSEEEEEEETTSCHHHHHHHH-HHHHHHHHHHTCCSCCEEEEEECGGGCCS
T ss_pred HhCCEEEEEEECCCCcchHHHHH-HHHHHHHHHhCcCCCCEEEEEECCCCCCc
Confidence 8999999999999876 55555 66777666654 57999999999998753
No 149
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.70 E-value=2e-17 Score=126.42 Aligned_cols=119 Identities=17% Similarity=0.133 Sum_probs=73.1
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcCCC-CCCC-------CCCeeee-eEEEEEECCeEEEEEEEeCCCcccccc----
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTF-PTDY-------VPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNR---- 69 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~~~-~~~~-------~~t~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~---- 69 (175)
....+||+++|.+|+|||||+|+++.... ...+ .++.... ....+..++..+.+.+|||||..+...
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence 34579999999999999999999875543 3333 3333222 233333456667999999999743211
Q ss_pred ---cc-------cccc-------------cCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 70 ---LR-------PLSY-------------RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 70 ---~~-------~~~~-------------~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
+. ..++ .++|+++++++.++......- ..+++.+.. ++|+++|+||+|+...
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d-~~~l~~l~~---~~pvi~V~nK~D~~~~ 159 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD-IEFMKRLHE---KVNIIPLIAKADTLTP 159 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHH-HHHHHHHTT---TSCEEEEESSGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHH-HHHHHHHhc---cCCEEEEEeccCCCCH
Confidence 11 1112 247899999887653222222 456666665 7999999999998654
No 150
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.70 E-value=6.4e-17 Score=131.23 Aligned_cols=116 Identities=22% Similarity=0.255 Sum_probs=79.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCC--CCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccc-----------
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR----------- 71 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~----------- 71 (175)
..+||+++|++|||||||+|++++... ..+..+++.+.....+..++. .+.+|||+|..+.....
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence 468999999999999999999998764 344445555555566777775 57899999975432211
Q ss_pred -cccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 72 -PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 72 -~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
..+++.+|++++++|+++..+.+.. .+...+.. .+.|+++|+||+|+.+.+
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~--~~~~~ilv~NK~Dl~~~~ 308 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMER--RGRASVVVFNKWDLVVHR 308 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH--TTCEEEEEEECGGGSTTG
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECccCCCch
Confidence 1346789999999999987666543 34444444 478999999999997644
No 151
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.69 E-value=7.2e-17 Score=124.98 Aligned_cols=114 Identities=18% Similarity=0.145 Sum_probs=79.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCC--CCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcc---------ccccccc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE---------DYNRLRP 72 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~---------~~~~~~~ 72 (175)
.+..+|+++|.+|||||||+|++++..+. .....++.......+..+ ...+.+|||||.. .+.....
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~--~~~i~~iDTpG~~~~~~~~l~~~~~~~~~ 83 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG--AYQAIYVDTPGLHMEEKRAINRLMNKAAS 83 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET--TEEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEEC--CeeEEEEECcCCCccchhhHHHHHHHHHH
Confidence 34568999999999999999999987653 222223332222223333 3578999999987 3444556
Q ss_pred ccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcc
Q 030525 73 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (175)
Q Consensus 73 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 124 (175)
.+++.+|++++|+|.++ +......+...+.. .+.|+++|+||+|+.+
T Consensus 84 ~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~--~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR---WTPDDEMVLNKLRE--GKAPVILAVNKVDNVQ 130 (301)
T ss_dssp SCCCCEEEEEEEEETTC---CCHHHHHHHHHHHS--SSSCEEEEEESTTTCC
T ss_pred HHHhcCCEEEEEEeCCC---CCHHHHHHHHHHHh--cCCCEEEEEECcccCc
Confidence 78899999999999976 32221223333332 4789999999999986
No 152
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.69 E-value=1.8e-16 Score=123.70 Aligned_cols=73 Identities=21% Similarity=0.276 Sum_probs=60.9
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEECC----------ChhhHHHHHHHHHHHHhhc-C-CCCcEEEEEeCC
Q 030525 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI----------SKASYENVAKKWIPELRHY-A-PGVPIILVGTKL 120 (175)
Q Consensus 53 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~----------~~~s~~~~~~~~~~~~~~~-~-~~~p~ilv~nK~ 120 (175)
.+++++||++||++++..+..|+++++++|+|||++ +..++.+. ..|+..+.+. . .++|++|++||+
T Consensus 166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es-~~~~~~i~~~~~~~~~~iiL~~NK~ 244 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEES-KALFRTIITYPWFQNSSVILFLNKK 244 (327)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHH-HHHHHHHHTSGGGTTCEEEEEEECH
T ss_pred ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHH-HHHHHHHhhhhccCCceEEEEEECc
Confidence 478999999999999999999999999999999665 66778777 5566655432 2 689999999999
Q ss_pred CCcccc
Q 030525 121 DLRDDK 126 (175)
Q Consensus 121 Dl~~~~ 126 (175)
|+.+++
T Consensus 245 DL~~~k 250 (327)
T 3ohm_A 245 DLLEEK 250 (327)
T ss_dssp HHHHHH
T ss_pred hhhhhh
Confidence 998765
No 153
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.69 E-value=3.1e-17 Score=137.24 Aligned_cols=118 Identities=14% Similarity=0.137 Sum_probs=82.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCC--CCCC-----CCCC------eeeee---EEEEEE---CCeEEEEEEEeCCCc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNT--FPTD-----YVPT------VFDNF---SANVVV---DGSTVNLGLWDTAGQ 64 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~--~~~~-----~~~t------~~~~~---~~~~~~---~~~~~~~~~~D~~G~ 64 (175)
++..||+|+|..++|||||+++|+... .... ...+ .+... ...+.. ++..+.+++|||||+
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh 81 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH 81 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCc
Confidence 457899999999999999999998632 2111 0000 00011 111111 556789999999999
Q ss_pred ccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 65 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
.+|......+++.+|++++|+|+++..+.+.. ..|...... ++|+++|+||+|+.+.
T Consensus 82 ~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~-~~~~~~~~~---~ipiIvViNKiDl~~a 138 (599)
T 3cb4_D 82 VDFSYEVSRSLAACEGALLVVDAGQGVEAQTL-ANCYTAMEM---DLEVVPVLNKIDLPAA 138 (599)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHH-HHHHHHHHT---TCEEEEEEECTTSTTC
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHHC---CCCEEEeeeccCcccc
Confidence 99988888889999999999999998777776 677665543 7899999999999764
No 154
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.69 E-value=9.8e-18 Score=136.61 Aligned_cols=115 Identities=18% Similarity=0.203 Sum_probs=75.7
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCCC--CCCCCCeeeeeEEEEEECCeEEEEEEEeCCC--------cccccccccccc
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAG--------QEDYNRLRPLSY 75 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G--------~~~~~~~~~~~~ 75 (175)
..+|+++|.+|||||||+|+|.+..+. .+..+++.+.... ........+.+||||| ++++......++
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~--~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 100 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYS--SAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 100 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEE--ECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEE--EEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence 569999999999999999999987653 2222222232222 3333445799999999 556666667788
Q ss_pred cCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 76 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 76 ~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
+.+|++++|+|..+..+... ..+.+.+.+ .+.|+++|+||+|+.+.+
T Consensus 101 ~~ad~il~VvD~~~~~~~~d--~~l~~~l~~--~~~pvilV~NK~D~~~~~ 147 (456)
T 4dcu_A 101 DEADVIIFMVNGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLDNTEMR 147 (456)
T ss_dssp HHCSEEEEEEESSSCSCHHH--HHHHHHHTT--CCSCEEEEEECC------
T ss_pred hhCCEEEEEEeCCCCCChHH--HHHHHHHHH--cCCCEEEEEECccchhhh
Confidence 99999999999876544333 244455544 579999999999987543
No 155
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.68 E-value=4.3e-16 Score=125.24 Aligned_cols=120 Identities=18% Similarity=0.130 Sum_probs=79.2
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHhhcC---CCCCCCCC--CeeeeeEE-EEEE-------------C--C----eEEE
Q 030525 1 MSASRFIKCVTVGDGAVGKTCMLISYTSN---TFPTDYVP--TVFDNFSA-NVVV-------------D--G----STVN 55 (175)
Q Consensus 1 m~~~~~~ki~v~G~~~~GKTsli~~l~~~---~~~~~~~~--t~~~~~~~-~~~~-------------~--~----~~~~ 55 (175)
|.....+||+++|..++|||||+++|.+. .+..+..+ |....+.. .... + + ....
T Consensus 3 ~~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~ 82 (408)
T 1s0u_A 3 LGSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRR 82 (408)
T ss_dssp --CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEE
T ss_pred cccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccE
Confidence 34567899999999999999999999843 33333222 32222221 1111 1 1 1378
Q ss_pred EEEEeCCCcccccccccccccCccEEEEEEECCC----hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 56 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS----KASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 56 ~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
+.+|||||+++|.......+..+|++++|+|+++ +++.+.+ ..| ... ...|+++|+||+|+.+.+
T Consensus 83 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~~~----~~l-~~~~iivv~NK~Dl~~~~ 151 (408)
T 1s0u_A 83 VSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHL-MAL----EIL-GIDKIIIVQNKIDLVDEK 151 (408)
T ss_dssp EEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHH-HHH----HHT-TCCCEEEEEECTTSSCTT
T ss_pred EEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHH-HHH----HHc-CCCeEEEEEEccCCCCHH
Confidence 9999999999987766677788999999999985 4555554 322 221 235899999999997643
No 156
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.68 E-value=4.1e-17 Score=133.79 Aligned_cols=118 Identities=15% Similarity=0.127 Sum_probs=77.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCC--CCCC------------------------------CCCCeeeeeEEEEEECC
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNT--FPTD------------------------------YVPTVFDNFSANVVVDG 51 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~--~~~~------------------------------~~~t~~~~~~~~~~~~~ 51 (175)
...+||+++|.+++|||||+++|+... +... ....+.+... ..++.
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~--~~~~~ 108 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICT--SHFST 108 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCE--EEEEC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeee--EEEec
Confidence 457899999999999999999998541 1100 0011111111 12223
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHH-----HHHHHHHHHhhcCCCCcEEEEEeCCCCcc
Q 030525 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYEN-----VAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (175)
Q Consensus 52 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 124 (175)
....+.+|||||+++|......+++.+|++++|+|+++..++.. ........+... ...|+++|+||+|+.+
T Consensus 109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~~~~iIvviNK~Dl~~ 185 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKMDNVD 185 (483)
T ss_dssp SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-TCCCEEEEEECGGGGT
T ss_pred CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-CCCcEEEEEECcCccc
Confidence 34679999999999998888889999999999999998754321 112222223322 2357999999999986
No 157
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.68 E-value=1.5e-17 Score=134.82 Aligned_cols=119 Identities=16% Similarity=0.132 Sum_probs=80.0
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHhhcC--CCCCCC------------------------------CCCeeeeeEEEEE
Q 030525 1 MSASRFIKCVTVGDGAVGKTCMLISYTSN--TFPTDY------------------------------VPTVFDNFSANVV 48 (175)
Q Consensus 1 m~~~~~~ki~v~G~~~~GKTsli~~l~~~--~~~~~~------------------------------~~t~~~~~~~~~~ 48 (175)
|.....+||+++|..++|||||+++|+.. .+.... ...+.+.... .
T Consensus 1 ~~~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~--~ 78 (435)
T 1jny_A 1 MSQKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFM--R 78 (435)
T ss_dssp ---CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------C--E
T ss_pred CCCCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEE--E
Confidence 56678899999999999999999999864 332110 0011111111 1
Q ss_pred ECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHH-------HHHhhcCCCCcEEEEEeCCC
Q 030525 49 VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWI-------PELRHYAPGVPIILVGTKLD 121 (175)
Q Consensus 49 ~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~-------~~~~~~~~~~p~ilv~nK~D 121 (175)
.+.....+.+|||||+++|......+++.+|++|+|+|+++ .+|+.. ..|. ..+... .-.|+++|+||+|
T Consensus 79 ~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~-~~~~~qt~~~~~~~~~~-~~~~iivviNK~D 155 (435)
T 1jny_A 79 FETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAG-MSVEGQTREHIILAKTM-GLDQLIVAVNKMD 155 (435)
T ss_dssp EECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHH-HSTTCHHHHHHHHHHHT-TCTTCEEEEECGG
T ss_pred EecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-Cccccc-cccchHHHHHHHHHHHc-CCCeEEEEEEccc
Confidence 22334679999999999998887888999999999999998 677644 2222 222221 1246999999999
Q ss_pred Ccc
Q 030525 122 LRD 124 (175)
Q Consensus 122 l~~ 124 (175)
+.+
T Consensus 156 l~~ 158 (435)
T 1jny_A 156 LTE 158 (435)
T ss_dssp GSS
T ss_pred CCC
Confidence 976
No 158
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.67 E-value=1.1e-17 Score=138.31 Aligned_cols=115 Identities=14% Similarity=0.090 Sum_probs=83.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCC-----------------CCC------CCCeeeeeEEEEEECCeEEEEEEEeC
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP-----------------TDY------VPTVFDNFSANVVVDGSTVNLGLWDT 61 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~-----------------~~~------~~t~~~~~~~~~~~~~~~~~~~~~D~ 61 (175)
+..+|+|+|.+|+|||||+++|+...-. .++ ...+.......+... .+.+++|||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--~~~i~liDT 89 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYK--DYLINLLDT 89 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEET--TEEEEEECC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeC--CEEEEEEEC
Confidence 5679999999999999999999721100 000 000111112223333 467999999
Q ss_pred CCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 62 ~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
||+.+|......+++.+|++|+|+|+++..+.+.. ..|. .+.. .++|+++|+||+|+...
T Consensus 90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~-~~~~-~~~~--~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTI-KLME-VCRL--RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH-HHHH-HHHT--TTCCEEEEEECTTSCCS
T ss_pred CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHH-HHHH--cCCCEEEEEeCCCCccc
Confidence 99999998888899999999999999988777766 5554 3433 37899999999999754
No 159
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.67 E-value=1.1e-16 Score=128.68 Aligned_cols=116 Identities=22% Similarity=0.221 Sum_probs=82.5
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcC--------CCCCC----------CCCCeeeeeEEEEEECCeEEEEEEEeCCCc
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSN--------TFPTD----------YVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~--------~~~~~----------~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~ 64 (175)
....+||+++|.+++|||||+++|... .+... ....+.+. .....+.....+.+|||||+
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~--~~~~~~~~~~~~~iiDtpG~ 85 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINT--AHVEYETAKRHYSHVDCPGH 85 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSC--EEEEEECSSCEEEEEECCCS
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEe--eeeEeccCCeEEEEEECCCh
Confidence 456789999999999999999999862 22110 00011111 22233333467899999999
Q ss_pred ccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCcc
Q 030525 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRD 124 (175)
Q Consensus 65 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 124 (175)
++|......+++.+|++++|+|+++....+. ..|+..+... ++| +++|+||+|+.+
T Consensus 86 ~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt--~~~l~~~~~~--~ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 86 ADYIKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQV--GVPYIVVFMNKVDMVD 142 (405)
T ss_dssp GGGHHHHHHHHTTCSSEEEEEETTTCCCHHH--HHHHHHHHHT--TCCCEEEEEECGGGCC
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEEECccccC
Confidence 9998777788999999999999998754443 3455555543 678 899999999974
No 160
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.67 E-value=1.3e-16 Score=133.44 Aligned_cols=114 Identities=20% Similarity=0.181 Sum_probs=81.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCC----CCCeeeeeEEEE-------------EECCeEEEEEEEeCCCccc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDY----VPTVFDNFSANV-------------VVDGSTVNLGLWDTAGQED 66 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~----~~t~~~~~~~~~-------------~~~~~~~~~~~~D~~G~~~ 66 (175)
.+..+|+++|.+++|||||++++.+..+.... .++.+..+.... ..+.....+++|||||+++
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 46789999999999999999999975443211 111111111100 0000112589999999999
Q ss_pred ccccccccccCccEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcc
Q 030525 67 YNRLRPLSYRGADVFILAFSLIS---KASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (175)
Q Consensus 67 ~~~~~~~~~~~~d~vi~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 124 (175)
|..++..+++.+|++|+|+|+++ +++++.+ .. +.. .++|+++|+||+|+.+
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l-~~----l~~--~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEAL-NI----LRM--YRTPFVVAANKIDRIH 136 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHH-HH----HHH--TTCCEEEEEECGGGST
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHH-HH----HHH--cCCeEEEEeccccccc
Confidence 99999999999999999999998 6776655 32 222 3789999999999964
No 161
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.66 E-value=4.9e-16 Score=122.64 Aligned_cols=73 Identities=19% Similarity=0.292 Sum_probs=62.9
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEECCC----------hhhHHHHHHHHHHHHhhc--CCCCcEEEEEeCC
Q 030525 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS----------KASYENVAKKWIPELRHY--APGVPIILVGTKL 120 (175)
Q Consensus 53 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~ 120 (175)
.+.+++||++|+++++..|..|+++++++|+|||+++ ..++++. ..|+..+.+. ..++|++|++||+
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~-~~~~~~i~~~~~~~~~piiLv~NK~ 270 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHES-MKLFDSICNNKWFTDTSIILFLNKK 270 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHH-HHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHH-HHHHHHHHcCccccCCcEEEEEECc
Confidence 4789999999999999999999999999999999998 5678887 6777766553 2689999999999
Q ss_pred CCcccc
Q 030525 121 DLRDDK 126 (175)
Q Consensus 121 Dl~~~~ 126 (175)
|+.+++
T Consensus 271 DL~~~k 276 (353)
T 1cip_A 271 DLFEEK 276 (353)
T ss_dssp HHHHHH
T ss_pred Cchhhh
Confidence 997554
No 162
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.66 E-value=2.2e-17 Score=135.43 Aligned_cols=113 Identities=17% Similarity=0.239 Sum_probs=81.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCe-eeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi 82 (175)
++..+|+++|..++|||||++++....+.....+.. .+.....+..++ ..+.+|||||+++|..++...++.+|+++
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 577899999999999999999999754433222211 111111222233 46899999999999999989999999999
Q ss_pred EEEECCCh---hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 83 LAFSLISK---ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 83 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
+|+|+++. ++.+.+ ..+.. .++|+++++||+|+.+.
T Consensus 80 LVVda~~g~~~qT~e~l-----~~~~~--~~vPiIVviNKiDl~~~ 118 (501)
T 1zo1_I 80 LVVAADDGVMPQTIEAI-----QHAKA--AQVPVVVAVNKIDKPEA 118 (501)
T ss_dssp EEEETTTBSCTTTHHHH-----HHHHH--TTCCEEEEEECSSSSTT
T ss_pred EEeecccCccHHHHHHH-----HHHHh--cCceEEEEEEecccccc
Confidence 99999884 444333 22222 37899999999999753
No 163
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.66 E-value=1.6e-16 Score=137.74 Aligned_cols=118 Identities=15% Similarity=0.127 Sum_probs=86.7
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcC--CC----------CCC------CCCCeeeee-EEEEE------------ECC
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSN--TF----------PTD------YVPTVFDNF-SANVV------------VDG 51 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~--~~----------~~~------~~~t~~~~~-~~~~~------------~~~ 51 (175)
.....||+|+|..++|||||+++|+.. .. .+. ...|..... ...+. .++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 356789999999999999999999853 11 100 001111111 11121 234
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcc
Q 030525 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (175)
Q Consensus 52 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 124 (175)
..+.+++|||||+.+|......+++.+|++|+|+|+++..+++.. ..|..... .++|+++|+||+|+..
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~-~~~~~~~~---~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE-TVLRQALG---ERIKPVVVINKVDRAL 164 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHH-HHHHHHHH---TTCEEEEEEECHHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCeEEEEECCCcch
Confidence 578999999999999999888999999999999999999888876 66654443 3799999999999873
No 164
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.66 E-value=5.6e-16 Score=125.69 Aligned_cols=116 Identities=16% Similarity=0.141 Sum_probs=77.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCC--CCCC-----------------------------C-CCCeeeeeEEEEEECC
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNT--FPTD-----------------------------Y-VPTVFDNFSANVVVDG 51 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~--~~~~-----------------------------~-~~t~~~~~~~~~~~~~ 51 (175)
...+||+++|.+++|||||+++|+... +... . ...+.+.....+..+
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~- 93 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE- 93 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC-
Confidence 457899999999999999999996431 1110 0 011112122222233
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhh---HH---HHHHHHHHHHhhcCCCCc-EEEEEeCCCCcc
Q 030525 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS---YE---NVAKKWIPELRHYAPGVP-IILVGTKLDLRD 124 (175)
Q Consensus 52 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 124 (175)
...+.+|||||+++|......+++.+|++++|+|+++... |+ .. ...+..+.. .++| +++|+||+|+.+
T Consensus 94 -~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt-~e~l~~~~~--~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 94 -KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQT-REHAMLAKT--AGVKHLIVLINKMDDPT 169 (439)
T ss_pred -CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchH-HHHHHHHHH--cCCCeEEEEeecCCCcc
Confidence 4589999999999998888888999999999999997632 11 11 122222322 2566 999999999953
No 165
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.65 E-value=5.3e-16 Score=125.68 Aligned_cols=117 Identities=18% Similarity=0.212 Sum_probs=78.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCC--CCCC----------CCCCeeeee--------------------EEEEEECC
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNT--FPTD----------YVPTVFDNF--------------------SANVVVDG 51 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~--~~~~----------~~~t~~~~~--------------------~~~~~~~~ 51 (175)
...+||+++|..++|||||+++|+... +..+ ..+++...+ ........
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 356899999999999999999998643 1111 011111100 00111222
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCC-cEEEEEeCCCCcc
Q 030525 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGV-PIILVGTKLDLRD 124 (175)
Q Consensus 52 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p~ilv~nK~Dl~~ 124 (175)
....+.+|||||+++|......+++.+|++++|+|+++....+. ..++..+... +. |+++|+||+|+.+
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt--~~~l~~~~~~--~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT--RRHSYIASLL--GIKHIVVAINKMDLNG 171 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH--HHHHHHHHHT--TCCEEEEEEECTTTTT
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEEcCcCCc
Confidence 34679999999999998777788999999999999998653333 3344444432 34 6999999999976
No 166
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.65 E-value=9.6e-17 Score=131.11 Aligned_cols=117 Identities=19% Similarity=0.182 Sum_probs=67.2
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhc--CCCCC------------------------C-------CCCCeeeeeEEEEEE
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTS--NTFPT------------------------D-------YVPTVFDNFSANVVV 49 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~--~~~~~------------------------~-------~~~t~~~~~~~~~~~ 49 (175)
....+||+++|..++|||||+++|+. +.+.. + ...|.... ...+..
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~-~~~~~~ 118 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVG-RAYFET 118 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC-----------------------------CCEEEC
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEee-eEEEec
Confidence 35678999999999999999999974 22210 0 00010000 111222
Q ss_pred CCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChh---hHHHH--HHHHHHHHhhcCCCCc-EEEEEeCCCCc
Q 030525 50 DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA---SYENV--AKKWIPELRHYAPGVP-IILVGTKLDLR 123 (175)
Q Consensus 50 ~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~---s~~~~--~~~~~~~~~~~~~~~p-~ilv~nK~Dl~ 123 (175)
+ ...+.+|||||+++|.......++.+|++|+|+|+++.. +|+.. ....+..+.. .++| +++|+||+|+.
T Consensus 119 ~--~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~--~~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 119 E--HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART--QGINHLVVVINKMDEP 194 (467)
T ss_dssp S--SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH--TTCSSEEEEEECTTST
T ss_pred C--CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH--cCCCEEEEEEECccCC
Confidence 3 367999999999999888888899999999999999863 33211 0111112222 3677 99999999995
Q ss_pred c
Q 030525 124 D 124 (175)
Q Consensus 124 ~ 124 (175)
+
T Consensus 195 ~ 195 (467)
T 1r5b_A 195 S 195 (467)
T ss_dssp T
T ss_pred C
Confidence 4
No 167
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.64 E-value=8.2e-16 Score=129.16 Aligned_cols=117 Identities=15% Similarity=0.159 Sum_probs=78.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCC--------------------------------CCCeeeeeEEEEEECC
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDY--------------------------------VPTVFDNFSANVVVDG 51 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~--------------------------------~~t~~~~~~~~~~~~~ 51 (175)
...+||+++|.+++|||||+++|+.....-.. ...+.+.....+..
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~-- 242 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-- 242 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC--
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec--
Confidence 45789999999999999999999865321110 01111111222222
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhh---H---HHHHHHHHHHHhhcCCCCcEEEEEeCCCCcc
Q 030525 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS---Y---ENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (175)
Q Consensus 52 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 124 (175)
....+.+|||||+++|......+++.+|++|+|+|+++... + ... ......+... ...|+++|+||+|+.+
T Consensus 243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt-~e~l~~~~~l-gi~~iIVVvNKiDl~~ 319 (611)
T 3izq_1 243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQT-KEHMLLASSL-GIHNLIIAMNKMDNVD 319 (611)
T ss_dssp SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHH-HHHHHHHHTT-TCCEEEEEEECTTTTT
T ss_pred CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHH-HHHHHHHHHc-CCCeEEEEEecccccc
Confidence 33679999999999998888889999999999999987421 1 111 1222222221 2245999999999986
No 168
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.64 E-value=2.3e-16 Score=121.28 Aligned_cols=119 Identities=24% Similarity=0.245 Sum_probs=77.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCCC------CCC-----------------------eeee-------------
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDY------VPT-----------------------VFDN------------- 42 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~------~~t-----------------------~~~~------------- 42 (175)
...+|+|+|.+|||||||+|+|++..+.+.. .|+ +.+.
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 4679999999999999999999988774221 121 0000
Q ss_pred --------eEEEEEEC-CeEEEEEEEeCCCccc-------------ccccccccccCccEEE-EEEECCChhhHHHHHHH
Q 030525 43 --------FSANVVVD-GSTVNLGLWDTAGQED-------------YNRLRPLSYRGADVFI-LAFSLISKASYENVAKK 99 (175)
Q Consensus 43 --------~~~~~~~~-~~~~~~~~~D~~G~~~-------------~~~~~~~~~~~~d~vi-~v~d~~~~~s~~~~~~~ 99 (175)
....+.+. .....+.+|||||... +......+++.++.++ +|+|+++..+.... ..
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~-~~ 183 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LK 183 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH-HH
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH-HH
Confidence 00000000 0125799999999642 2334456778888776 69999876554443 34
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 100 WIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 100 ~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
|+..+.. .+.|+++|+||+|+.+.+
T Consensus 184 ~~~~~~~--~~~~~i~V~NK~Dl~~~~ 208 (299)
T 2aka_B 184 IAKEVDP--QGQRTIGVITKLDLMDEG 208 (299)
T ss_dssp HHHHHCT--TCSSEEEEEECGGGSCTT
T ss_pred HHHHhCC--CCCeEEEEEEccccCCCC
Confidence 5555543 478999999999997643
No 169
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.64 E-value=2.8e-16 Score=130.04 Aligned_cols=118 Identities=16% Similarity=0.145 Sum_probs=79.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCC--CCCC--------CCCCeee----------ee-EEEEEECCeEEEEEEEeCCC
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPTD--------YVPTVFD----------NF-SANVVVDGSTVNLGLWDTAG 63 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~--~~~~--------~~~t~~~----------~~-~~~~~~~~~~~~~~~~D~~G 63 (175)
+..||+++|.+|+|||||+++|+... +... ...+..+ .. ..........+.+++|||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 57899999999999999999999632 1000 0001111 00 00111222346899999999
Q ss_pred cccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 64 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
+.+|......+++.+|++|+|+|+++...... ..+...+.. .++|+++|+||+|+...+
T Consensus 92 ~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t--~~~~~~~~~--~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 92 HEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT--RKLMEVTRL--RDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHH--HHHHHHHTT--TTCCEEEEEECTTSCCSC
T ss_pred ChhHHHHHHHHHHHCCEEEEEEeCCccchHHH--HHHHHHHHH--cCCCEEEEEcCcCCcccc
Confidence 99998877789999999999999987643332 233333433 378999999999997643
No 170
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.64 E-value=1.7e-15 Score=121.89 Aligned_cols=118 Identities=19% Similarity=0.161 Sum_probs=79.8
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcC---CCCCCCCC--CeeeeeEE-EEEE-------------C--C----eEEEEE
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSN---TFPTDYVP--TVFDNFSA-NVVV-------------D--G----STVNLG 57 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~---~~~~~~~~--t~~~~~~~-~~~~-------------~--~----~~~~~~ 57 (175)
.+..+||+++|..++|||||+++|.+. .+..+..+ |....+.. .+.. + + ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 456799999999999999999999843 23322222 32222221 1111 1 1 137899
Q ss_pred EEeCCCcccccccccccccCccEEEEEEECCC----hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 58 LWDTAGQEDYNRLRPLSYRGADVFILAFSLIS----KASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 58 ~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
+|||||+++|.......+..+|++++|+|+++ +++.+.+ ..| ..+ ...|+++|+||+|+.+.+
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~~~-~~~----~~~~iivviNK~Dl~~~~ 153 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL-MAL-QII----GQKNIIIAQNKIELVDKE 153 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH-HHH-HHH----TCCCEEEEEECGGGSCHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHH-HHH-HHc----CCCcEEEEEECccCCCHH
Confidence 99999999887766667788999999999985 4455554 322 222 235899999999997643
No 171
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.63 E-value=6.4e-16 Score=126.64 Aligned_cols=113 Identities=21% Similarity=0.167 Sum_probs=79.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCC-------CCCCCCC-CeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNT-------FPTDYVP-TVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSY 75 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~-------~~~~~~~-t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~ 75 (175)
.+.++|+++|..++|||||+++|.+.. +..+..+ .+.+.....+..++ ..+.+|||||+++|......++
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~ 94 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA 94 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHH
Confidence 357899999999999999999999765 1111111 11111112233444 6799999999999877777889
Q ss_pred cCccEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 76 RGADVFILAFSLIS---KASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 76 ~~~d~vi~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
..+|++++|+|+++ +++.+.+ . .+.. .++|.++|+||+|+.++
T Consensus 95 ~~aD~~ilVvda~~g~~~qt~e~l-~----~~~~--~~ip~IvviNK~Dl~~~ 140 (482)
T 1wb1_A 95 DIIDLALIVVDAKEGPKTQTGEHM-L----ILDH--FNIPIIVVITKSDNAGT 140 (482)
T ss_dssp TSCCEEEEEEETTTCSCHHHHHHH-H----HHHH--TTCCBCEEEECTTSSCH
T ss_pred hhCCEEEEEEecCCCccHHHHHHH-H----HHHH--cCCCEEEEEECCCcccc
Confidence 99999999999998 4555544 2 2232 26889999999999764
No 172
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.63 E-value=1.7e-15 Score=129.01 Aligned_cols=116 Identities=16% Similarity=0.115 Sum_probs=83.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhc--CCCCCC-----------C------CCCeeeeeEEEEEECCeEEEEEEEeCCCc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTS--NTFPTD-----------Y------VPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~--~~~~~~-----------~------~~t~~~~~~~~~~~~~~~~~~~~~D~~G~ 64 (175)
++..+|+|+|.+|+|||||+++|+. +.+... + ...+.......+..+ .+.+++|||||+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~ 85 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE--GHRVNIIDTPGH 85 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET--TEEEEEECCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC--CeeEEEEECcCC
Confidence 4678999999999999999999994 322110 0 000000111122333 367999999999
Q ss_pred ccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 65 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
.+|......+++.+|++++|+|+++..+.... ..|.. +.. .+.|+++|+||+|+...
T Consensus 86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~-~~~~~-~~~--~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTE-TVWRQ-ATT--YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHH-HHHHH-HHH--TTCCEEEEEECTTSTTC
T ss_pred cchHHHHHHHHHHCCEEEEEECCCCCCcHHHH-HHHHH-HHH--cCCCEEEEEECCCcccc
Confidence 99988888889999999999999988777765 55543 443 37999999999999764
No 173
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.63 E-value=4e-16 Score=125.01 Aligned_cols=114 Identities=18% Similarity=0.143 Sum_probs=79.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcC-------CCCCC----------CCCCeeeeeEEEEEECCeEEEEEEEeCCCcccc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSN-------TFPTD----------YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~-------~~~~~----------~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 67 (175)
..+||+++|..++|||||+++|... .+... ....+.+. ....+......+.+|||||+++|
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~--~~~~~~~~~~~~~iiDtpG~~~f 79 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINA--AHVEYSTAARHYAHTDCPGHADY 79 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEEC--EEEEEECSSCEEEEEECSSHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEe--eeEEeccCCeEEEEEECCChHHH
Confidence 4689999999999999999999863 11100 00001111 11223333467899999999998
Q ss_pred cccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCcc
Q 030525 68 NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRD 124 (175)
Q Consensus 68 ~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 124 (175)
......+++.+|++|+|+|+++....+.. +.| ..+.. .++| +++|+||+|+.+
T Consensus 80 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~-e~l-~~~~~--~~vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 80 VKNMITGTAPLDGCILVVAANDGPMPQTR-EHL-LLARQ--IGVEHVVVYVNKADAVQ 133 (397)
T ss_dssp HHHHHHTSSCCSEEEEEEETTTCSCHHHH-HHH-HHHHH--TTCCCEEEEEECGGGCS
T ss_pred HHHHHhhHhhCCEEEEEEECCCCCCHHHH-HHH-HHHHH--cCCCeEEEEEECcccCC
Confidence 77777889999999999999986544443 333 34443 3688 689999999975
No 174
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.62 E-value=1.1e-15 Score=130.03 Aligned_cols=116 Identities=17% Similarity=0.129 Sum_probs=83.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcC--CCCC------------------CCCCCeeeeeEEEEEECCeEEEEEEEeCCC
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFPT------------------DYVPTVFDNFSANVVVDGSTVNLGLWDTAG 63 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~--~~~~------------------~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G 63 (175)
.+..||+|+|.+|+|||||+++|+.. .+.. ....|.. .....+..+ .+.+++|||||
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~-~~~~~~~~~--~~~i~liDTPG 86 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITIT-AAVTTCFWK--DHRINIIDTPG 86 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC-----------------------------CCEEEEEET--TEEEEEECCCS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccc-cceEEEEEC--CeEEEEEECcC
Confidence 46789999999999999999999842 2110 0011111 111122223 36799999999
Q ss_pred cccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 64 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
+.+|......+++.+|++|+|+|+++..+.+.. ..|... .. .++|+++|+||+|+...+
T Consensus 87 ~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~-~~~~~~-~~--~~~p~ivviNKiD~~~~~ 145 (691)
T 1dar_A 87 HVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSE-TVWRQA-EK--YKVPRIAFANKMDKTGAD 145 (691)
T ss_dssp STTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHH-HH--TTCCEEEEEECTTSTTCC
T ss_pred ccchHHHHHHHHHHCCEEEEEEECCCCcchhhH-HHHHHH-HH--cCCCEEEEEECCCcccCC
Confidence 999988888899999999999999998887776 566543 33 379999999999997643
No 175
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.62 E-value=1.2e-15 Score=124.39 Aligned_cols=119 Identities=16% Similarity=0.112 Sum_probs=79.5
Q ss_pred CC-CCceeEEEEECCCCCCHHHHHHHhhcC--CCCCC------------------------------CCCCeeeeeEEEE
Q 030525 1 MS-ASRFIKCVTVGDGAVGKTCMLISYTSN--TFPTD------------------------------YVPTVFDNFSANV 47 (175)
Q Consensus 1 m~-~~~~~ki~v~G~~~~GKTsli~~l~~~--~~~~~------------------------------~~~t~~~~~~~~~ 47 (175)
|. ....++|+++|.+++|||||+++|+.. .+... ....+.+.....+
T Consensus 1 M~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~ 80 (458)
T 1f60_A 1 MGKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKF 80 (458)
T ss_dssp -CCCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEE
T ss_pred CCCCCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEE
Confidence 54 356799999999999999999999863 22110 0011111111122
Q ss_pred EECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChh---hHH---HHHHHHHHHHhhcCCCCc-EEEEEeCC
Q 030525 48 VVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA---SYE---NVAKKWIPELRHYAPGVP-IILVGTKL 120 (175)
Q Consensus 48 ~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-~ilv~nK~ 120 (175)
+.....+.+|||||+++|......+++.+|++|+|+|+++.. +|+ .. ..++..+.. .++| +++|+||+
T Consensus 81 --~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt-~~~~~~~~~--~~v~~iivviNK~ 155 (458)
T 1f60_A 81 --ETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQT-REHALLAFT--LGVRQLIVAVNKM 155 (458)
T ss_dssp --ECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHH-HHHHHHHHH--TTCCEEEEEEECG
T ss_pred --ecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhH-HHHHHHHHH--cCCCeEEEEEEcc
Confidence 223467999999999999888778899999999999999763 331 22 222223333 2565 99999999
Q ss_pred CCcc
Q 030525 121 DLRD 124 (175)
Q Consensus 121 Dl~~ 124 (175)
|+.+
T Consensus 156 Dl~~ 159 (458)
T 1f60_A 156 DSVK 159 (458)
T ss_dssp GGGT
T ss_pred cccc
Confidence 9973
No 176
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.62 E-value=2.2e-16 Score=131.17 Aligned_cols=118 Identities=21% Similarity=0.194 Sum_probs=81.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCC---CCCCCCeeeeeEEEEEEC-------------------------------
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP---TDYVPTVFDNFSANVVVD------------------------------- 50 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~------------------------------- 50 (175)
...+|+|+|.+|+|||||+|+|++..+. ....+++.. ... +..+
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~-~~~-i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDC-FVA-VMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCS-EEE-EECCSSSEEECCC------------------CCCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccce-EEE-EEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 5689999999999999999999988763 222333211 000 0000
Q ss_pred CeE---------EEEEEEeCCCccc-----------ccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCC
Q 030525 51 GST---------VNLGLWDTAGQED-----------YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPG 110 (175)
Q Consensus 51 ~~~---------~~~~~~D~~G~~~-----------~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 110 (175)
+.. ..+.+|||||... +......++.++|++++|+|+++....+.. ..|+..+.. .+
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~--~~ 218 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEF-SEAIGALRG--HE 218 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHH-HHHHHHTTT--CG
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHH-HHHHHHHHh--cC
Confidence 000 2589999999864 333444567899999999999875444554 567776654 36
Q ss_pred CcEEEEEeCCCCcccch
Q 030525 111 VPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 111 ~p~ilv~nK~Dl~~~~~ 127 (175)
.|+++|+||+|+.+.++
T Consensus 219 ~pvilVlNK~Dl~~~~e 235 (550)
T 2qpt_A 219 DKIRVVLNKADMVETQQ 235 (550)
T ss_dssp GGEEEEEECGGGSCHHH
T ss_pred CCEEEEEECCCccCHHH
Confidence 89999999999976543
No 177
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.61 E-value=4.6e-16 Score=120.58 Aligned_cols=70 Identities=27% Similarity=0.254 Sum_probs=47.0
Q ss_pred EEEEEEeCCCccc-------------ccccccccccCccEEEEEEECCChhhH-HHHHHHHHHHHhhcCCCCcEEEEEeC
Q 030525 54 VNLGLWDTAGQED-------------YNRLRPLSYRGADVFILAFSLISKASY-ENVAKKWIPELRHYAPGVPIILVGTK 119 (175)
Q Consensus 54 ~~~~~~D~~G~~~-------------~~~~~~~~~~~~d~vi~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ilv~nK 119 (175)
..+.+|||||..+ +......+++++|++++|+|.++.... ... ..+...+.. .+.|+++|+||
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~-~~i~~~~~~--~~~~~i~v~NK 207 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDA-LQLAKEVDP--EGKRTIGVITK 207 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSH-HHHHHHHCS--SCSSEEEEEEC
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHH-HHHHHHhCC--CCCcEEEEEcC
Confidence 4689999999753 333445678999999999997533211 111 234444443 47899999999
Q ss_pred CCCcccc
Q 030525 120 LDLRDDK 126 (175)
Q Consensus 120 ~Dl~~~~ 126 (175)
+|+.+.+
T Consensus 208 ~Dl~~~~ 214 (315)
T 1jwy_B 208 LDLMDKG 214 (315)
T ss_dssp TTSSCSS
T ss_pred cccCCcc
Confidence 9997544
No 178
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.61 E-value=4e-15 Score=126.85 Aligned_cols=117 Identities=15% Similarity=0.099 Sum_probs=83.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcC--CCCCC------------------CCCCeeeeeEEEEEE-----CCeEEEEEE
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFPTD------------------YVPTVFDNFSANVVV-----DGSTVNLGL 58 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~--~~~~~------------------~~~t~~~~~~~~~~~-----~~~~~~~~~ 58 (175)
++..||+|+|..|+|||||+++|+.. .+... ...|.... ...+.. ++..+.+++
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSA-ATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeec-eEEEEECCccccCCceeEEE
Confidence 46789999999999999999999842 22110 00011110 111222 234488999
Q ss_pred EeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 59 WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 59 ~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
|||||+.+|......+++.+|++|+|+|+++....+.. ..|.. +.. .++|+++|+||+|+...
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~-~~~~~-~~~--~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSE-TVWRQ-ANK--YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHH-HHHHH-HHH--cCCCEEEEEeCCCcccc
Confidence 99999999988888899999999999999988766654 44543 332 37999999999998764
No 179
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.61 E-value=1.5e-15 Score=129.31 Aligned_cols=119 Identities=13% Similarity=0.199 Sum_probs=82.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCC-CCCCCeee----e----eEEEEEE-CCe----------------------
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFD----N----FSANVVV-DGS---------------------- 52 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~-~~~~t~~~----~----~~~~~~~-~~~---------------------- 52 (175)
..++|+|+|.+|+|||||+|+|++....+ ...|++.. . ...+... ++.
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 57899999999999999999999876532 22333310 0 0011111 000
Q ss_pred -----------------------E--EEEEEEeCCCccc---ccccccccccCccEEEEEEECCChhhHHHHHHHHHHHH
Q 030525 53 -----------------------T--VNLGLWDTAGQED---YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL 104 (175)
Q Consensus 53 -----------------------~--~~~~~~D~~G~~~---~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~ 104 (175)
. ..+.+|||||... .......+++.+|++++|+|++++.+.... ..|...+
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~-~~l~~~l 226 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGER-RYLENYI 226 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHH-HHHHHHT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHH-HHHHHHH
Confidence 0 2589999999654 333445788999999999999988888776 6676555
Q ss_pred hhcCCCCcEEEEEeCCCCcccc
Q 030525 105 RHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 105 ~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
... +.|+++|+||+|+.+.+
T Consensus 227 ~~~--~~~iiiVlNK~Dl~~~~ 246 (695)
T 2j69_A 227 KGR--GLTVFFLVNAWDQVRES 246 (695)
T ss_dssp TTS--CCCEEEEEECGGGGGGG
T ss_pred Hhh--CCCEEEEEECccccccc
Confidence 542 67899999999987543
No 180
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.59 E-value=2.3e-15 Score=119.09 Aligned_cols=117 Identities=23% Similarity=0.196 Sum_probs=77.3
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCee-eee-----------------------------------------
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNF----------------------------------------- 43 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~-~~~----------------------------------------- 43 (175)
..+|+|+|++|||||||++++.+..+.+....+.. ...
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR 113 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence 34999999999999999999999876333222110 000
Q ss_pred -------------EEEEEECCeEEEEEEEeCCCcccc-------------cccccccccCccEEEEEEECCChhhHHHHH
Q 030525 44 -------------SANVVVDGSTVNLGLWDTAGQEDY-------------NRLRPLSYRGADVFILAFSLISKASYENVA 97 (175)
Q Consensus 44 -------------~~~~~~~~~~~~~~~~D~~G~~~~-------------~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~ 97 (175)
...+.. .....+.+|||||..++ ......|++++|++++++|.++.....
T Consensus 114 ~~g~~~~~s~~~i~l~i~~-~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--- 189 (360)
T 3t34_A 114 ETGRSKAISSVPIHLSIYS-PNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--- 189 (360)
T ss_dssp TSCTTCCCCCSCEEEEEEE-TTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG---
T ss_pred hcCCCCCcccceEEEEEeC-CCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC---
Confidence 000010 11235899999998765 334556889999999999876544332
Q ss_pred HHHHHHHhhcC-CCCcEEEEEeCCCCcccc
Q 030525 98 KKWIPELRHYA-PGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 98 ~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~ 126 (175)
..|+..+.... .+.|+++|+||+|+.+.+
T Consensus 190 ~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~ 219 (360)
T 3t34_A 190 SDAIKISREVDPSGDRTFGVLTKIDLMDKG 219 (360)
T ss_dssp CHHHHHHHHSCTTCTTEEEEEECGGGCCTT
T ss_pred HHHHHHHHHhcccCCCEEEEEeCCccCCCc
Confidence 23444444443 468999999999997654
No 181
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.57 E-value=7.5e-15 Score=117.59 Aligned_cols=84 Identities=20% Similarity=0.195 Sum_probs=47.9
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCC-CCCCCCeeeeeEEE--E-------------------EECC-eEEEEEEEeCCC
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSAN--V-------------------VVDG-STVNLGLWDTAG 63 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~-~~~~~t~~~~~~~~--~-------------------~~~~-~~~~~~~~D~~G 63 (175)
+||+++|.+|||||||+|++.+.... .++..++.+..... + ..++ ..+.+++|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999987632 23333332221111 1 1222 257899999999
Q ss_pred ccc----cccccc---ccccCccEEEEEEECCCh
Q 030525 64 QED----YNRLRP---LSYRGADVFILAFSLISK 90 (175)
Q Consensus 64 ~~~----~~~~~~---~~~~~~d~vi~v~d~~~~ 90 (175)
..+ .+.+.. .+++++|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 854 222222 457899999999999875
No 182
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.57 E-value=3.9e-15 Score=108.60 Aligned_cols=116 Identities=14% Similarity=0.039 Sum_probs=70.0
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCcccc----------cccc
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDY----------NRLR 71 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~----------~~~~ 71 (175)
.+...+|+++|++|||||||++++.+..+.....++.+... ...+..++ .+.+||+||.... ....
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 34567999999999999999999998765433334433222 22233333 4789999997431 1111
Q ss_pred cccc---cCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 72 PLSY---RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 72 ~~~~---~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
..++ ..++++++++|++++.+.... .....+.. .+.|+++|+||+|+...
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~--~~~~~~~v~nK~D~~s~ 152 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVD--SNIAVLVLLTKADKLAS 152 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH--TTCCEEEEEECGGGSCH
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHHH--cCCCeEEEEecccCCCc
Confidence 2233 578999999999987655321 22222222 36899999999998653
No 183
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.55 E-value=2.7e-15 Score=119.21 Aligned_cols=103 Identities=14% Similarity=0.058 Sum_probs=73.4
Q ss_pred EEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~ 87 (175)
+|+++|.+++|||||+++|+.. ..|. +.... ........+.+|||||+++|.......++.+|++++|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~~------giTi-~~~~~--~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd- 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGKK------GTSS-DITMY--NNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP- 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSEE------EEES-SSEEE--EECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC------CEEE-EeeEE--EEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence 8999999999999999999811 1111 11111 222233569999999999987766677899999999999
Q ss_pred CChhhHHHHHHHHHHHHhhcCCCCcE-EEEEe-CCCCccc
Q 030525 88 ISKASYENVAKKWIPELRHYAPGVPI-ILVGT-KLDLRDD 125 (175)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~~~~p~-ilv~n-K~Dl~~~ 125 (175)
++ ..+... ..|...+... ++|. ++++| |+|+ +.
T Consensus 93 ~~-g~~~qt-~e~~~~~~~~--~i~~~ivvvNNK~Dl-~~ 127 (370)
T 2elf_A 93 PQ-GLDAHT-GECIIALDLL--GFKHGIIALTRSDST-HM 127 (370)
T ss_dssp TT-CCCHHH-HHHHHHHHHT--TCCEEEEEECCGGGS-CH
T ss_pred CC-CCcHHH-HHHHHHHHHc--CCCeEEEEEEeccCC-CH
Confidence 53 334444 4555555543 5777 89999 9999 54
No 184
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.54 E-value=3.9e-15 Score=130.94 Aligned_cols=117 Identities=22% Similarity=0.180 Sum_probs=79.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcC-------CCCC--CCCC-----Ceeeee-EEEEEECCeEEEEEEEeCCCccccc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSN-------TFPT--DYVP-----TVFDNF-SANVVVDGSTVNLGLWDTAGQEDYN 68 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~-------~~~~--~~~~-----t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~ 68 (175)
...+||+++|..++|||||+++|... .+.. ..+. +.+... ...+.++.....+.+|||||+++|.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 45789999999999999999999863 1100 0000 000000 0112233344679999999999998
Q ss_pred ccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCcc
Q 030525 69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRD 124 (175)
Q Consensus 69 ~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 124 (175)
.....+++.+|++|+|+|+++....+.. .++..+... ++| +++|+||+|+.+
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~~QTr--EhL~ll~~l--gIP~IIVVINKiDLv~ 426 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPMPQTR--EHILLGRQV--GVPYIIVFLNKCDMVD 426 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSCTTHH--HHHHHHHHH--TCSCEEEEEECCTTCC
T ss_pred HHHHHHHhhCCEEEEEEcCCccCcHHHH--HHHHHHHHc--CCCeEEEEEeeccccc
Confidence 7777889999999999999986544332 344444432 678 789999999985
No 185
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.54 E-value=1.4e-15 Score=127.34 Aligned_cols=112 Identities=21% Similarity=0.215 Sum_probs=62.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcC--CCCCC-----------------------------CC-CCeeeeeEEEEEECC
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFPTD-----------------------------YV-PTVFDNFSANVVVDG 51 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~--~~~~~-----------------------------~~-~t~~~~~~~~~~~~~ 51 (175)
...+||+++|.+++|||||+++|+.. ..... .. .++.+..... +..
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~--~~~ 252 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTT--FES 252 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEE--EEe
Confidence 45789999999999999999999732 11100 00 0011111111 122
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEECCCh----------hhHHHHHHHHHHHHhhcCCCCc-EEEEEeCC
Q 030525 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----------ASYENVAKKWIPELRHYAPGVP-IILVGTKL 120 (175)
Q Consensus 52 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~ 120 (175)
....+.||||||+++|.......++.+|++|+|+|+++. ++.+.+ ..+.. .++| +|+|+||+
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l-----~~~~~--lgip~iIvviNKi 325 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHA-----YLLRA--LGISEIVVSVNKL 325 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHH-----HHHHH--SSCCCEEEEEECG
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHH-----HHHHH--cCCCeEEEEEecc
Confidence 346789999999999988888899999999999999853 233222 22222 2455 99999999
Q ss_pred CCcc
Q 030525 121 DLRD 124 (175)
Q Consensus 121 Dl~~ 124 (175)
|+.+
T Consensus 326 Dl~~ 329 (592)
T 3mca_A 326 DLMS 329 (592)
T ss_dssp GGGT
T ss_pred cccc
Confidence 9975
No 186
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.53 E-value=4.2e-14 Score=113.77 Aligned_cols=120 Identities=17% Similarity=0.142 Sum_probs=71.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCCC--------CCCeeeee-EEEEEECCeEEEEEEEeCCCcccccc------
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDY--------VPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNR------ 69 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~--------~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~------ 69 (175)
-.++|+++|++|||||||++++++..+.... .++..... ...+...+....+.+||++|...+..
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 4678999999999999999999987653211 11111111 11111234446799999999765311
Q ss_pred -------------------cccccccCccEEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 70 -------------------LRPLSYRGADVFILAFSLISK-ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 70 -------------------~~~~~~~~~d~vi~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
+...++.++++.+++|+...- .++......|++.+. .++|+|+|+||+|+...+.
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~e 184 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEE 184 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHH
Confidence 123456777776677776543 456555346777765 3799999999999876544
No 187
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.52 E-value=1.8e-14 Score=122.26 Aligned_cols=116 Identities=19% Similarity=0.092 Sum_probs=81.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCe----------------e-eeeEEEEEECCeEEEEEEEeCCCccc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV----------------F-DNFSANVVVDGSTVNLGLWDTAGQED 66 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~----------------~-~~~~~~~~~~~~~~~~~~~D~~G~~~ 66 (175)
++..+|+|+|..|+|||||+++++..........+. . .............+.+++|||||+.+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 457799999999999999999999433211100000 0 00111222222347899999999999
Q ss_pred ccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCc
Q 030525 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 123 (175)
Q Consensus 67 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 123 (175)
|......+++.+|++++|+|+++....... .++..+.. .++|+++|+||+|+.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~--~~~~~~~~--~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQVGTE--RAWTVAER--LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHHHH--HHHHHHHH--TTCCEEEEEECGGGC
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccchhHH--HHHHHHHH--ccCCEEEEecCCchh
Confidence 988788889999999999999877555443 44444544 379999999999987
No 188
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.52 E-value=5.9e-14 Score=112.22 Aligned_cols=79 Identities=22% Similarity=0.292 Sum_probs=68.2
Q ss_pred EEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCC----------hhhHHHHHHHHHHHHhhc--CCCCcE
Q 030525 46 NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS----------KASYENVAKKWIPELRHY--APGVPI 113 (175)
Q Consensus 46 ~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~p~ 113 (175)
.+.+++ +++++|||+|+++++..+..|+++++++|+|||+++ ..+|++. ..|+..+.+. .+++|+
T Consensus 211 ~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~-~~~~~~i~~~~~~~~~pi 287 (402)
T 1azs_C 211 KFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEA-LNLFKSIWNNRWLRTISV 287 (402)
T ss_dssp EEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHH-HHHHHHHHTCTTCSSCCE
T ss_pred EeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHH-HHHHHHHHhcccCCCCeE
Confidence 344444 789999999999999999999999999999999999 8899998 7888877654 368999
Q ss_pred EEEEeCCCCcccch
Q 030525 114 ILVGTKLDLRDDKQ 127 (175)
Q Consensus 114 ilv~nK~Dl~~~~~ 127 (175)
+|||||+|+.+++.
T Consensus 288 iLvgNK~DL~~~ki 301 (402)
T 1azs_C 288 ILFLNKQDLLAEKV 301 (402)
T ss_dssp EEEEECHHHHHHHH
T ss_pred EEEEEChhhhhhhh
Confidence 99999999976654
No 189
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.49 E-value=4.2e-15 Score=115.04 Aligned_cols=99 Identities=16% Similarity=0.114 Sum_probs=83.8
Q ss_pred HHHHHhhcCCCC-CCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChh-hHHHHHH
Q 030525 21 CMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA-SYENVAK 98 (175)
Q Consensus 21 sli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~-s~~~~~~ 98 (175)
+++.+++.+.|. .++.||.++.+...+..++ ++++||+ +++++.+++.+++++|++++|||++++. +++.+ .
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l-~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYII-D 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHH-H
T ss_pred cEEEEEEcccccccCCCCCCccEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHH-H
Confidence 688899999998 8888998877665432333 6899999 8999999999999999999999999997 78877 8
Q ss_pred HHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 99 KWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 99 ~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
.|+..+.. .++|+++|+||+||.+.+.
T Consensus 106 ~~l~~~~~--~~~piilv~NK~DL~~~~~ 132 (301)
T 1u0l_A 106 KFLVLAEK--NELETVMVINKMDLYDEDD 132 (301)
T ss_dssp HHHHHHHH--TTCEEEEEECCGGGCCHHH
T ss_pred HHHHHHHH--CCCCEEEEEeHHHcCCchh
Confidence 89988766 4899999999999986554
No 190
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.47 E-value=2.4e-13 Score=107.35 Aligned_cols=83 Identities=19% Similarity=0.209 Sum_probs=56.5
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCC-CCCCCCeeeeeEEEEEECCe---------------EEEEEEEeCCCccccc--
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDYN-- 68 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~---------------~~~~~~~D~~G~~~~~-- 68 (175)
++|+++|.+|||||||+|++.+..+. .++..++.......+.+++. +..+++|||||..++.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 68999999999999999999987642 23333332222223333432 2579999999987653
Q ss_pred --ccccc---cccCccEEEEEEECCC
Q 030525 69 --RLRPL---SYRGADVFILAFSLIS 89 (175)
Q Consensus 69 --~~~~~---~~~~~d~vi~v~d~~~ 89 (175)
.+... +++++|++++|+|+++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 23333 4789999999999986
No 191
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.46 E-value=7e-14 Score=110.35 Aligned_cols=119 Identities=25% Similarity=0.282 Sum_probs=69.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCCCC------CCeee--------------------ee---------------
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYV------PTVFD--------------------NF--------------- 43 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~------~t~~~--------------------~~--------------- 43 (175)
...+|+|+|.+|||||||+|+|++..+.+... |+... ..
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 35699999999999999999999887742221 21000 00
Q ss_pred ---------EEEEEEC-CeEEEEEEEeCCCccc-------------ccccccccccCccEEEE-EEECCChhhHHHHHHH
Q 030525 44 ---------SANVVVD-GSTVNLGLWDTAGQED-------------YNRLRPLSYRGADVFIL-AFSLISKASYENVAKK 99 (175)
Q Consensus 44 ---------~~~~~~~-~~~~~~~~~D~~G~~~-------------~~~~~~~~~~~~d~vi~-v~d~~~~~s~~~~~~~ 99 (175)
...+.+. .....+.+|||||... +..+...|++.++.+++ +.|.+....-... ..
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~-~~ 188 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LK 188 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH-HH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH-HH
Confidence 0001110 1135699999999632 23344456666665555 5555432221111 12
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 100 WIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 100 ~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
++..+.. .+.|+++|+||+|+.+..
T Consensus 189 i~~~~~~--~~~~~i~V~NK~Dl~~~~ 213 (353)
T 2x2e_A 189 VAKEVDP--QGQRTIGVITKLDLMDEG 213 (353)
T ss_dssp HHHHHCT--TCTTEEEEEECGGGSCTT
T ss_pred HHHHhCc--CCCceEEEeccccccCcc
Confidence 4444433 478999999999997543
No 192
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.44 E-value=4e-13 Score=106.29 Aligned_cols=73 Identities=18% Similarity=0.193 Sum_probs=56.6
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEECCC----------hhhHHHHHHHHHHHHhhc--CCCCcEEEEEeCC
Q 030525 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS----------KASYENVAKKWIPELRHY--APGVPIILVGTKL 120 (175)
Q Consensus 53 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~ 120 (175)
.+.+++||++|++.++..+..++++++++|+|||+++ ..++.+. ..|+..+.+. ..++|++|++||+
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es-~~~~~~i~~~~~~~~~piILv~NK~ 278 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTES-LNIFETIVNNRVFSNVSIILFLNKT 278 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHH-HHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHH-HHHHHHHhcchhhCCCCEEEEEECh
Confidence 3789999999999999999999999999999999999 7799988 6676666543 2689999999999
Q ss_pred CCcccc
Q 030525 121 DLRDDK 126 (175)
Q Consensus 121 Dl~~~~ 126 (175)
|+.+++
T Consensus 279 DL~~~k 284 (362)
T 1zcb_A 279 DLLEEK 284 (362)
T ss_dssp HHHHHH
T ss_pred hhhhhh
Confidence 997654
No 193
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.41 E-value=6e-14 Score=108.55 Aligned_cols=119 Identities=17% Similarity=0.180 Sum_probs=62.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcC-CCCCCC--------CCCeeee-eEEEEEECCeEEEEEEEeCCCc-------ccc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSN-TFPTDY--------VPTVFDN-FSANVVVDGSTVNLGLWDTAGQ-------EDY 67 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~-~~~~~~--------~~t~~~~-~~~~~~~~~~~~~~~~~D~~G~-------~~~ 67 (175)
..++|+++|++|||||||++++.+. .+.... .++.... .......++....+++||++|. +.+
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 4689999999999999999998864 443322 1111111 1111222445678999999998 444
Q ss_pred ccccc-------cccc-------------CccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 68 NRLRP-------LSYR-------------GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 68 ~~~~~-------~~~~-------------~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
..... .+++ .+++++++.+.+. .+++.....+++ +..++.|+++|+||.|+...++
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~---~l~~~~~iilV~~K~Dl~~~~e 172 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMK---AIHNKVNIVPVIAKADTLTLKE 172 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHH---HHTTTSCEEEEECCGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHH---HHHhcCCEEEEEEeCCCCCHHH
Confidence 44332 3332 2344444444322 234444223333 3335789999999999976543
No 194
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.41 E-value=8.8e-13 Score=106.04 Aligned_cols=115 Identities=18% Similarity=0.166 Sum_probs=79.0
Q ss_pred EEEEECCCCCCHHHHHHHhhcCCC-CCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCccc----cccccccc---ccCcc
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----YNRLRPLS---YRGAD 79 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~----~~~~~~~~---~~~~d 79 (175)
.|+++|++|||||||++++.+... ..++..++.......+..++ ...+.+||+||..+ +..+...+ +..++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 589999999999999999997643 22333333332233344443 24689999999743 22222223 45799
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCccc
Q 030525 80 VFILAFSLISKASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDD 125 (175)
Q Consensus 80 ~vi~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~ 125 (175)
.++.++|++ ...+.++ ..|.+++..+. .+.|.++|+||+|+...
T Consensus 238 ~lL~vvDls-~~~~~~l-s~g~~el~~la~aL~~~P~ILVlNKlDl~~~ 284 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTL-ETLRKEVGAYDPALLRRPSLVALNKVDLLEE 284 (416)
T ss_dssp EEEEEEETT-SCHHHHH-HHHHHHHHHHCHHHHHSCEEEEEECCTTSCH
T ss_pred hhhEEeCCc-cCCHHHH-HHHHHHHHHHhHHhhcCCEEEEEECCChhhH
Confidence 999999998 6667776 66776666543 26899999999999764
No 195
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.39 E-value=2e-12 Score=102.64 Aligned_cols=114 Identities=16% Similarity=0.139 Sum_probs=81.3
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCC-CCCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccc----c---ccccccC
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR----L---RPLSYRG 77 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~----~---~~~~~~~ 77 (175)
..+|.++|.||||||||+|++.+... ..++..++.+.....+.+++ .+++++||||..+-.. . ....++.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 46899999999999999999997543 45667777777777777776 4689999999643211 1 1124678
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCcc
Q 030525 78 ADVFILAFSLISKASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRD 124 (175)
Q Consensus 78 ~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~ 124 (175)
+|++++|.|++++..-. +.+..++.... .+.|.+++.||.|...
T Consensus 150 ad~il~vvD~~~p~~~~---~~i~~EL~~~~~~l~~k~~~i~~nK~d~~g 196 (376)
T 4a9a_A 150 CNLLFIILDVNKPLHHK---QIIEKELEGVGIRLNKTPPDILIKKKEKGG 196 (376)
T ss_dssp CSEEEEEEETTSHHHHH---HHHHHHHHHTTEEETCCCCCEEEEECSSSC
T ss_pred cCccccccccCccHHHH---HHHHHHHHHhhHhhccCChhhhhhHhhhhh
Confidence 99999999999875332 22333333322 4678899999999754
No 196
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.36 E-value=1.2e-12 Score=108.70 Aligned_cols=116 Identities=13% Similarity=0.087 Sum_probs=82.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCC--C---------------CCCCCCCee------eeeEEEEEECCeEEEEEEEeC
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNT--F---------------PTDYVPTVF------DNFSANVVVDGSTVNLGLWDT 61 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~--~---------------~~~~~~t~~------~~~~~~~~~~~~~~~~~~~D~ 61 (175)
+.-||.|+|..++|||||..+++... . ..++.+... ......+..+ .++++++||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~--~~~iNlIDT 107 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYR--DRVVNLLDT 107 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEET--TEEEEEECC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEEC--CEEEEEEeC
Confidence 56799999999999999999997211 0 000000000 0001122233 478999999
Q ss_pred CCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 62 ~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
||+.+|.....+.++-+|++|+|+|+...-.-+.. ..|...... ++|.+++.||+|....+
T Consensus 108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~-~v~~~a~~~---~lp~i~fINK~Dr~~ad 168 (548)
T 3vqt_A 108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTR-KLMDVCRMR---ATPVMTFVNKMDREALH 168 (548)
T ss_dssp CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHH-HHHHHHHHT---TCCEEEEEECTTSCCCC
T ss_pred CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccH-HHHHHHHHh---CCceEEEEecccchhcc
Confidence 99999999888899999999999999988666655 566544443 89999999999987643
No 197
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.30 E-value=1.5e-11 Score=97.52 Aligned_cols=83 Identities=17% Similarity=0.178 Sum_probs=55.5
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCC-CCCCCCCeeeeeEEEEEECC-------------------eEEEEEEEeCCCccc
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDG-------------------STVNLGLWDTAGQED 66 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~-------------------~~~~~~~~D~~G~~~ 66 (175)
++|+++|.+|||||||+|++.+... ..++..++.........+++ .+..+++||+||..+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 6899999999999999999997542 23333332221111122221 245799999999876
Q ss_pred ccc----ccc---ccccCccEEEEEEECCC
Q 030525 67 YNR----LRP---LSYRGADVFILAFSLIS 89 (175)
Q Consensus 67 ~~~----~~~---~~~~~~d~vi~v~d~~~ 89 (175)
... +.. ..++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 532 222 24789999999999985
No 198
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.29 E-value=2e-12 Score=103.09 Aligned_cols=89 Identities=17% Similarity=0.093 Sum_probs=50.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCC-CCCCCeeeeeEEEEEECCe---------------EEEEEEEeCCCccccc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDYN 68 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~---------------~~~~~~~D~~G~~~~~ 68 (175)
..++|+++|.+|||||||+|++.+..... ++..++.......+.+++. +..+++||+||..+..
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 45799999999999999999999876532 2223333333334444332 2359999999987644
Q ss_pred c-------cccccccCccEEEEEEECCChhhH
Q 030525 69 R-------LRPLSYRGADVFILAFSLISKASY 93 (175)
Q Consensus 69 ~-------~~~~~~~~~d~vi~v~d~~~~~s~ 93 (175)
. ....+++++|++++|+|+++..++
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i 132 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFEDDDI 132 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC------
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCCcch
Confidence 3 234567899999999999865543
No 199
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.27 E-value=2.2e-11 Score=103.98 Aligned_cols=117 Identities=17% Similarity=0.131 Sum_probs=81.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcC--------CCCCC-----CCCCe---eee---eEEEEEEC-----CeEEEEEEEe
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSN--------TFPTD-----YVPTV---FDN---FSANVVVD-----GSTVNLGLWD 60 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~--------~~~~~-----~~~t~---~~~---~~~~~~~~-----~~~~~~~~~D 60 (175)
+.-||.|+|.-++|||||..+|+.. ..... +.+.. +.. ........ ...+.++++|
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 5569999999999999999999821 11100 00000 000 01111121 1358899999
Q ss_pred CCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 61 ~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
|||+.+|.....+.++-+|++|+|+|+...-.-+.. ..|...... ++|.+++.||+|....
T Consensus 92 TPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~-~v~~~a~~~---~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 92 TPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSE-TVWRQANKY---GVPRIVYVNKMDRQGA 152 (709)
T ss_dssp CCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHH---TCCEEEEEECSSSTTC
T ss_pred CCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHH-HHHHHHHHc---CCCeEEEEccccccCc
Confidence 999999998888889999999999999987665554 555555554 8999999999998654
No 200
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.15 E-value=3.5e-12 Score=107.77 Aligned_cols=117 Identities=19% Similarity=0.103 Sum_probs=81.5
Q ss_pred eeEEEEECCCCCCHHHHHHHhhc--CCCCCC---CCC-Ceeee-----------eEEEEEECCeEEEEEEEeCCCccccc
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTS--NTFPTD---YVP-TVFDN-----------FSANVVVDGSTVNLGLWDTAGQEDYN 68 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~--~~~~~~---~~~-t~~~~-----------~~~~~~~~~~~~~~~~~D~~G~~~~~ 68 (175)
.-||.|+|..++|||||..+++. +..... ... +..|. ....+......+.++++||||+.+|.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 46899999999999999999982 222110 000 00000 01111222344679999999999999
Q ss_pred ccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 69 ~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
....+.++-+|++|+|+|+...-.-+.. ..|...... ++|.+++.||+|....+
T Consensus 82 ~Ev~raL~~~DgavlVVDa~~GV~~qT~-~v~~~a~~~---~lp~i~~INKmDr~~a~ 135 (638)
T 3j25_A 82 AEVYRSLSVLDGAILLISAKDGVQAQTR-ILFHALRKM---GIPTIFFINKIDQNGID 135 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTTCSHHH-HHHHHHHHH---TCSCEECCEECCSSSCC
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCcHHHH-HHHHHHHHc---CCCeEEEEeccccccCC
Confidence 8888889999999999999877554544 455544444 79999999999986543
No 201
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.12 E-value=3.1e-10 Score=97.07 Aligned_cols=117 Identities=21% Similarity=0.179 Sum_probs=72.2
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCCCC-CCCCCeeee------------------------------------------
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDN------------------------------------------ 42 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~~~-~~~~t~~~~------------------------------------------ 42 (175)
..+|+|+|..++|||||+|++++..+-+ ...+++...
T Consensus 51 lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g 130 (772)
T 3zvr_A 51 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 130 (772)
T ss_dssp CSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcC
Confidence 4599999999999999999999876621 111111000
Q ss_pred ---------eEEEEEECCeEEEEEEEeCCCcccc-------------cccccccc-cCccEEEEEEECCChhhHHHHHHH
Q 030525 43 ---------FSANVVVDGSTVNLGLWDTAGQEDY-------------NRLRPLSY-RGADVFILAFSLISKASYENVAKK 99 (175)
Q Consensus 43 ---------~~~~~~~~~~~~~~~~~D~~G~~~~-------------~~~~~~~~-~~~d~vi~v~d~~~~~s~~~~~~~ 99 (175)
....+...+ ...+.++||||-..- ......|+ ..+|++++|.|.++...-... ..
T Consensus 131 ~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~-l~ 208 (772)
T 3zvr_A 131 TNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LK 208 (772)
T ss_dssp STTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHH-HH
T ss_pred CCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHH-HH
Confidence 000111111 124789999995431 11222333 579999999999865333322 23
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 100 WIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 100 ~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
++..+.. .+.|+++|.||+|+.+..
T Consensus 209 ll~~L~~--~g~pvIlVlNKiDlv~~~ 233 (772)
T 3zvr_A 209 IAKEVDP--QGQRTIGVITKLDLMDEG 233 (772)
T ss_dssp HHHHHCT--TCSSEEEEEECTTSSCTT
T ss_pred HHHHHHh--cCCCEEEEEeCcccCCcc
Confidence 4555554 378999999999987543
No 202
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.12 E-value=8.6e-12 Score=98.47 Aligned_cols=61 Identities=18% Similarity=0.120 Sum_probs=42.5
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 54 ~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
+.+.+|||||... .....+..+|++++|+|.+.....+.+ . ....+.|+++|+||+|+.+.
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l-~-------~~~~~~p~ivVlNK~Dl~~~ 232 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGI-K-------KGVLELADIVVVNKADGEHH 232 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTC-C-------TTSGGGCSEEEEECCCGGGH
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHH-H-------HhHhhcCCEEEEECCCCcCh
Confidence 5789999999532 112345899999999998766544333 1 11124699999999999754
No 203
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.07 E-value=9e-12 Score=98.19 Aligned_cols=61 Identities=16% Similarity=0.119 Sum_probs=37.0
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 54 ~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
+.+.++||+|.... .......+|.+++|+|.+++...+.+ .. .+ -+.|.++|+||+|+.+.
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i-~~---~i----l~~~~ivVlNK~Dl~~~ 227 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGI-KR---GI----IEMADLVAVTKSDGDLI 227 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGH
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHh-HH---HH----HhcCCEEEEeeecCCCc
Confidence 46789999995321 12346789999999999876433222 11 11 14688999999999753
No 204
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.04 E-value=1.2e-10 Score=85.38 Aligned_cols=110 Identities=15% Similarity=0.086 Sum_probs=63.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-------------EEEEEECC------------------eE
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-------------SANVVVDG------------------ST 53 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-------------~~~~~~~~------------------~~ 53 (175)
...+|+++|.+|||||||+++|................. ...+..+. ..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 457999999999999999999986522111000000000 00011111 12
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 54 ~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
..+.+|||+|+..... .+-...+.+++|+|+++... .. ..+.... +.|.++|+||+|+.+.
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~--~~-~~~~~~~-----~~~~iiv~NK~Dl~~~ 169 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDD--VV-EKHPEIF-----RVADLIVINKVALAEA 169 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTT--HH-HHCHHHH-----HTCSEEEEECGGGHHH
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcch--hh-hhhhhhh-----hcCCEEEEecccCCcc
Confidence 4678999999621111 11125688999999876532 11 1122211 4799999999999654
No 205
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.03 E-value=9.8e-13 Score=96.98 Aligned_cols=36 Identities=14% Similarity=0.094 Sum_probs=28.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCee
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF 40 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~ 40 (175)
+..+|+++|.+|||||||+++|+...+...+.++..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~ 72 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIA 72 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEE
Confidence 568999999999999999999998765544344443
No 206
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.97 E-value=3.5e-11 Score=94.47 Aligned_cols=62 Identities=21% Similarity=0.128 Sum_probs=39.7
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 53 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
.+.+.+|||||...... .....+|++++|+|.++....+.+ .. .. .+.|.++|+||+|+.+.
T Consensus 148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l-~~---~~----~~~p~ivv~NK~Dl~~~ 209 (341)
T 2p67_A 148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGI-KK---GL----MEVADLIVINKDDGDNH 209 (341)
T ss_dssp TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCC-CH---HH----HHHCSEEEECCCCTTCH
T ss_pred CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHH-HH---hh----hcccCEEEEECCCCCCh
Confidence 35799999999654332 246899999999999765432211 11 11 14689999999999764
No 207
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.94 E-value=8.7e-10 Score=82.85 Aligned_cols=70 Identities=17% Similarity=0.008 Sum_probs=42.2
Q ss_pred EEEEEEeCCCccccccccc------ccccCccEEEEEEECCCh---hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcc
Q 030525 54 VNLGLWDTAGQEDYNRLRP------LSYRGADVFILAFSLISK---ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (175)
Q Consensus 54 ~~~~~~D~~G~~~~~~~~~------~~~~~~d~vi~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 124 (175)
+.+.+|||||+........ ..+.+ ++++++.|.... ..+............. .+.|+++|+||+|+..
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLS 185 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc--cCCCeEEEEecccccc
Confidence 5789999999876433221 13456 888888887533 2332221111111111 3689999999999976
Q ss_pred cc
Q 030525 125 DK 126 (175)
Q Consensus 125 ~~ 126 (175)
..
T Consensus 186 ~~ 187 (262)
T 1yrb_A 186 EE 187 (262)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 208
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.87 E-value=4.6e-09 Score=83.80 Aligned_cols=85 Identities=22% Similarity=0.244 Sum_probs=58.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCC--CCCCCCCeeeeeEEEEEECCe---------------EEEEEEEeCCCcccc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDY 67 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~~~~~D~~G~~~~ 67 (175)
...++.++|.+|||||||+|.+.+... ..++..++.......+.+.+. +..+.+||+||....
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 456899999999999999999998654 233333444444444555541 246899999996432
Q ss_pred cc-------cccccccCccEEEEEEECCC
Q 030525 68 NR-------LRPLSYRGADVFILAFSLIS 89 (175)
Q Consensus 68 ~~-------~~~~~~~~~d~vi~v~d~~~ 89 (175)
.+ .....++.+|+++.|+|+.+
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 21 12234689999999999864
No 209
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.76 E-value=6.2e-08 Score=77.91 Aligned_cols=115 Identities=17% Similarity=0.221 Sum_probs=61.0
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCCCCCC----CCCe-eeeeEEEEEECCeEEEEEEEeCCCcccccc-----------
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDY----VPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNR----------- 69 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~~~~~----~~t~-~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~----------- 69 (175)
.++++|+|++|+|||||++.+.+..+.... .+.. ...........+....+.++|++|-.....
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 467999999999999999999976542211 1111 111111111123334789999998532100
Q ss_pred --------------ccc--ccccCc--cE-EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 70 --------------LRP--LSYRGA--DV-FILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 70 --------------~~~--~~~~~~--d~-vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
... ....++ |+ ++++.|...+-+-.. ..+++.+. .++|+|+|.||+|....
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D--ieilk~L~---~~~~vI~Vi~KtD~Lt~ 191 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD--LVTMKKLD---SKVNIIPIIAKADAISK 191 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH--HHHHHHTC---SCSEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH--HHHHHHHh---hCCCEEEEEcchhccch
Confidence 000 011233 33 455555543333222 24455554 48999999999997644
No 210
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.75 E-value=1.6e-08 Score=76.89 Aligned_cols=115 Identities=17% Similarity=0.194 Sum_probs=63.4
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCCCCC--------CCCCeeeeeEEEEEE--CCeEEEEEEEeCCCcccccc---c--
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTD--------YVPTVFDNFSANVVV--DGSTVNLGLWDTAGQEDYNR---L-- 70 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~~~~--------~~~t~~~~~~~~~~~--~~~~~~~~~~D~~G~~~~~~---~-- 70 (175)
.++++++|++|+|||||++.+.+...... ..+.........+.. .+....+.++|++|-..... .
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 47999999999999999999996322111 001000000011111 22233688999998321100 0
Q ss_pred -----------------------ccccccCccEEEEEEECC-ChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 71 -----------------------RPLSYRGADVFILAFSLI-SKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 71 -----------------------~~~~~~~~d~vi~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
....+..+++.+++.|.. .+-+-.. ...++.+.. ..++++|.+|.|....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD--~~~l~~L~~---~~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD--LEFMKHLSK---VVNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH--HHHHHHHHT---TSEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH--HHHHHHHHh---cCcEEEEEeccccCCH
Confidence 011234578888888854 2222222 345555554 3899999999997654
No 211
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.70 E-value=2.3e-08 Score=77.19 Aligned_cols=60 Identities=18% Similarity=0.118 Sum_probs=52.2
Q ss_pred cccccccccccccCccEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 64 QEDYNRLRPLSYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 64 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
++++..+.+.+++++|++++|+|++++. +++.+ ..|+..+.. .++|+++|+||+|+.+++
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l-~~~l~~~~~--~~~~~ilV~NK~DL~~~~ 126 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLL-DNMLVVYEY--FKVEPVIVFNKIDLLNEE 126 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHH-HHHHHHHHH--TTCEEEEEECCGGGCCHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHH-HHHHHHHHh--CCCCEEEEEEcccCCCcc
Confidence 6788888888999999999999999986 88877 888887776 589999999999997654
No 212
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.64 E-value=7.1e-09 Score=82.18 Aligned_cols=111 Identities=11% Similarity=0.103 Sum_probs=65.5
Q ss_pred eEEEEECCCCCCHHHHHHHhhcC------CCC-CCCCCCeeeeeEEEEEECCeEEEEEEEeCCCccccccc----cc---
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSN------TFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL----RP--- 72 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~------~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~----~~--- 72 (175)
.+++++|.+|+|||||+|++.+. ... .....++... ..+..+. .+.++||||-...... ..
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~--~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDM--IEIPLES---GATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEE--EEEECST---TCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEee--EEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHHH
Confidence 47999999999999999999975 221 1122222221 1223332 2789999996432211 11
Q ss_pred ccc---cCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccc
Q 030525 73 LSY---RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (175)
Q Consensus 73 ~~~---~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 126 (175)
..+ +..+.++++.+....-.+..+ . .++.+.. .+.|++++.||.|..+..
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l-~-~l~~l~~--~~~~~~~v~~k~d~~~~~ 290 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGL-A-RLDYIKG--GRRSFVCYMANELTVHRT 290 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTT-E-EEEEEES--SSEEEEEEECTTSCEEEE
T ss_pred HHHhcccccCceEEEEcCCceEEECCE-E-EEEEccC--CCceEEEEecCCcccccc
Confidence 112 678889999887422111222 1 1111221 468999999999986554
No 213
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.56 E-value=4e-09 Score=82.63 Aligned_cols=60 Identities=15% Similarity=0.101 Sum_probs=36.2
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCc
Q 030525 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 123 (175)
Q Consensus 53 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 123 (175)
...+.++||+|...-. ......+|.+++++|.......+.+ ... +. +.|.+++.||+|+.
T Consensus 147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i-~~~---i~----~~~~ivvlNK~Dl~ 206 (337)
T 2qm8_A 147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGI-KKG---IF----ELADMIAVNKADDG 206 (337)
T ss_dssp TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------C-CTT---HH----HHCSEEEEECCSTT
T ss_pred CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHH-HHH---Hh----ccccEEEEEchhcc
Confidence 3578999999974321 1235789999999998654322211 111 11 24668888999974
No 214
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.56 E-value=7.3e-09 Score=82.10 Aligned_cols=112 Identities=12% Similarity=0.104 Sum_probs=64.2
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCC--------CCCCCeeeeeEEEEEECCeEEEEEEEeCCCcccccccc----ccc
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPT--------DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR----PLS 74 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~--------~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~----~~~ 74 (175)
.+++++|.+|+|||||+|++.+..... ....++.. ...+...+. +.++||||-....... ...
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~ 235 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLD--LIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQS 235 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----C--EEEEESSSS---CEEEECCCBCCTTSGGGGSCHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecc--eEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHH
Confidence 579999999999999999999753111 11111111 112223322 7899999964332111 111
Q ss_pred ------ccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCcccch
Q 030525 75 ------YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (175)
Q Consensus 75 ------~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 127 (175)
.+..+.++++.+.........+ ..++.+.. .+.|++++.||.|..+...
T Consensus 236 l~~~~~~~~i~~~~~~l~~~~~~~~g~l--~~~d~l~~--~~~~~~~v~nk~d~~~~~~ 290 (368)
T 3h2y_A 236 LKLITPTKEIKPMVFQLNEEQTLFFSGL--ARFDYVSG--GRRAFTCHFSNRLTIHRTK 290 (368)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTT--EEEEEEES--SSEEEEEEECTTSCEEEEE
T ss_pred HHHhccccccCceEEEEcCCCEEEEcce--EEEEEecC--CCceEEEEecCcccccccc
Confidence 3567888888876322111222 11111221 3689999999999876543
No 215
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.51 E-value=9e-08 Score=73.17 Aligned_cols=57 Identities=25% Similarity=0.289 Sum_probs=35.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCC--CCCCCCeeeeeEEEEEECCeEEEEEEEeCCCcc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE 65 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~D~~G~~ 65 (175)
+..++++++|.+|||||||+|++.+.... .+...++... ..+..+. .+.++||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQ--QWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeee--EEEEeCC---CEEEEECcCcC
Confidence 35689999999999999999999976532 1111122111 1222222 48899999964
No 216
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.48 E-value=5.4e-08 Score=73.63 Aligned_cols=56 Identities=13% Similarity=0.053 Sum_probs=34.6
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee-EEEEEECCeEEEEEEEeCCCccc
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~D~~G~~~ 66 (175)
++++++|.+|||||||+|++.+...... .++.+... ...+..+ ..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLE---NGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECT---TSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeC---CCEEEEECCCccc
Confidence 5899999999999999999997665321 11111111 1112222 2578999999754
No 217
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.34 E-value=1.4e-07 Score=68.89 Aligned_cols=63 Identities=10% Similarity=0.021 Sum_probs=41.3
Q ss_pred CCcccccccccccccCccEEEEEEECCChhhHHHHHHHH---HHHHhhc--CCCCcEEEEEeCC-CCccc
Q 030525 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW---IPELRHY--APGVPIILVGTKL-DLRDD 125 (175)
Q Consensus 62 ~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~---~~~~~~~--~~~~p~ilv~nK~-Dl~~~ 125 (175)
+||+..+.+|+.||.++|++|+|+|.+|.+.++.. +.+ ...+... ..++|++|++||. |+++.
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak-~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A 178 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQ-DEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR 178 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCCHH-HHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHH-HHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC
Confidence 38889999999999999999999999988654422 333 3333332 2579999999995 77543
No 218
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.34 E-value=3e-07 Score=75.51 Aligned_cols=115 Identities=16% Similarity=0.129 Sum_probs=63.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHhh------cCCC----CCCCCCCee-----------eeeEEEEE--------------
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYT------SNTF----PTDYVPTVF-----------DNFSANVV-------------- 48 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~------~~~~----~~~~~~t~~-----------~~~~~~~~-------------- 48 (175)
.....|+++|.+||||||+++++. +.+. .+.+.+... ........
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 346689999999999999999998 2221 011111110 00000000
Q ss_pred ECCeEEEEEEEeCCCcccccc-cccc---c--ccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcE-EEEEeCCC
Q 030525 49 VDGSTVNLGLWDTAGQEDYNR-LRPL---S--YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTKLD 121 (175)
Q Consensus 49 ~~~~~~~~~~~D~~G~~~~~~-~~~~---~--~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ilv~nK~D 121 (175)
.....+.+.|+||||...... .... . ...+|.+++|.|.+...... .....+.. .+|+ ++|.||.|
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~----~~a~~~~~---~~~i~gvVlNK~D 251 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE----AQAKAFKD---KVDVASVIVTKLD 251 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH----HHHHHHHH---HHCCCCEEEECTT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH----HHHHHHHh---hcCceEEEEeCCc
Confidence 000235789999999753211 1100 1 23789999999998654321 12222332 2675 89999999
Q ss_pred Cccc
Q 030525 122 LRDD 125 (175)
Q Consensus 122 l~~~ 125 (175)
....
T Consensus 252 ~~~~ 255 (504)
T 2j37_W 252 GHAK 255 (504)
T ss_dssp SCCC
T ss_pred cccc
Confidence 8643
No 219
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.31 E-value=4.8e-07 Score=75.61 Aligned_cols=63 Identities=21% Similarity=0.102 Sum_probs=39.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeee----EEEEEE-CCeEEEEEEEeCCCccc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF----SANVVV-DGSTVNLGLWDTAGQED 66 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~----~~~~~~-~~~~~~~~~~D~~G~~~ 66 (175)
.+..+|+|+|.+|||||||+|++.+....-...+++.... ...... ......+.++||||...
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 4578999999999999999999998653212222221111 111111 12235689999999754
No 220
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.06 E-value=1.3e-05 Score=64.34 Aligned_cols=112 Identities=14% Similarity=0.164 Sum_probs=58.2
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCe-eeee--EEEEEECCeEEEEEEEeCCCcccccccccc-----cccC
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNF--SANVVVDGSTVNLGLWDTAGQEDYNRLRPL-----SYRG 77 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~-~~~~--~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~-----~~~~ 77 (175)
...++++|++|||||||+|.+.+-.....-.-.. .... ...+........+.+||++|-......... -+.+
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE 148 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence 4479999999999999999999743211100000 0000 011111111124789999985321111111 1334
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCc
Q 030525 78 ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 123 (175)
Q Consensus 78 ~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 123 (175)
.+.+++ +|....+. +. ..+...+.. .+.|+++|.||.|+.
T Consensus 149 ~~~~~~-lS~G~~~k-qr--v~la~aL~~--~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 149 YDFFII-ISATRFKK-ND--IDIAKAISM--MKKEFYFVRTKVDSD 188 (413)
T ss_dssp CSEEEE-EESSCCCH-HH--HHHHHHHHH--TTCEEEEEECCHHHH
T ss_pred cCCeEE-eCCCCccH-HH--HHHHHHHHh--cCCCeEEEEecCccc
Confidence 455554 77652111 11 123333333 267999999999963
No 221
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.01 E-value=1.8e-06 Score=65.94 Aligned_cols=65 Identities=9% Similarity=-0.011 Sum_probs=45.8
Q ss_pred CCCcccccccccccccCccEEEEEEECCChhhHHHHH--HHHHHHHhhc--CCCCcEEEEEeC-CCCccc
Q 030525 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHY--APGVPIILVGTK-LDLRDD 125 (175)
Q Consensus 61 ~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~--~~~~~~~~~~--~~~~p~ilv~nK-~Dl~~~ 125 (175)
.+||+..+..|+.||.++|++|+|+|.+|++.++... ..+...+... ..++|++|.+|| .|+++.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A 263 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR 263 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC
Confidence 4578899999999999999999999999987554220 2222333322 358999999997 588643
No 222
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.98 E-value=1.2e-07 Score=77.43 Aligned_cols=112 Identities=15% Similarity=-0.017 Sum_probs=65.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCCCCCCCCCCeeeeeE-EEEEECCeEEEEEEEeCCCccc--ccccc--------cc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQED--YNRLR--------PL 73 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~D~~G~~~--~~~~~--------~~ 73 (175)
...+|+++|.+||||||+.++|....... ..++...... ......+......+||..|++. .+..+ ..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999998542111 1111110000 0000111123456899998732 22222 44
Q ss_pred cccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 030525 74 SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121 (175)
Q Consensus 74 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 121 (175)
++..+++.++|+|.++. +.+.. +.|.+.+... ..+++.+-..++
T Consensus 117 ~l~~~~G~~vV~D~tn~-~~~~R-~~~~~~~~~~--~~~vv~l~~~~~ 160 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNT-TRERR-AMIFNFGEQN--GYKTFFVESICV 160 (469)
T ss_dssp HHHTTCCSEEEEESCCC-SHHHH-HHHHHHHHHH--TCEEEEEEECCC
T ss_pred HHHhCCCCEEEEeCCCC-CHHHH-HHHHHHHHhc--CCcEEEEEEECC
Confidence 56677888999999988 45554 6787777654 345555544444
No 223
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.93 E-value=6.8e-06 Score=69.08 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHhhcCC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNT 30 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~ 30 (175)
.++|+|++|||||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 48999999999999999999753
No 224
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.81 E-value=1.9e-05 Score=63.79 Aligned_cols=111 Identities=17% Similarity=0.117 Sum_probs=61.9
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcC------CC----CCCCCC----------------------Ceeee--e-EEEEEEC
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSN------TF----PTDYVP----------------------TVFDN--F-SANVVVD 50 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~------~~----~~~~~~----------------------t~~~~--~-~~~~~~~ 50 (175)
...|+++|.+||||||+++.+... +. .+.+.+ +..+. . ...+. .
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~-~ 177 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGME-K 177 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHH-T
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHH-H
Confidence 457999999999999999988741 11 000000 00000 0 00000 0
Q ss_pred CeEEEEEEEeCCCcccccc-----cc-cccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCC-c-EEEEEeCCCC
Q 030525 51 GSTVNLGLWDTAGQEDYNR-----LR-PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGV-P-IILVGTKLDL 122 (175)
Q Consensus 51 ~~~~~~~~~D~~G~~~~~~-----~~-~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p-~ilv~nK~Dl 122 (175)
-..+.+.++||||...... +. ...+..+|.+++|.|.+.... .. .....+. +.. | ..+|.||.|.
T Consensus 178 ~~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~--~~--~~~~~~~---~~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 178 FKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ--AG--IQAKAFK---EAVGEIGSIIVTKLDG 250 (432)
T ss_dssp TSSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG--HH--HHHHHHH---TTSCSCEEEEEECSSS
T ss_pred hhCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH--HH--HHHHHHh---hcccCCeEEEEeCCCC
Confidence 0235688999999653211 10 112236899999999865532 11 2222232 345 6 7899999998
Q ss_pred cc
Q 030525 123 RD 124 (175)
Q Consensus 123 ~~ 124 (175)
..
T Consensus 251 ~~ 252 (432)
T 2v3c_C 251 SA 252 (432)
T ss_dssp CS
T ss_pred cc
Confidence 54
No 225
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.71 E-value=4.8e-05 Score=61.45 Aligned_cols=115 Identities=18% Similarity=0.182 Sum_probs=62.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhc-----C-CC----CCCCCCCe-------eeeeEEEEEE-----C------------
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTS-----N-TF----PTDYVPTV-------FDNFSANVVV-----D------------ 50 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~-----~-~~----~~~~~~t~-------~~~~~~~~~~-----~------------ 50 (175)
++..|+++|.+||||||++..+.. + +. .+.+.+.. .......+.. +
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 367899999999999999988873 1 11 01111110 0000000110 0
Q ss_pred -CeEEEEEEEeCCCcccccc-----ccc-ccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCc
Q 030525 51 -GSTVNLGLWDTAGQEDYNR-----LRP-LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 123 (175)
Q Consensus 51 -~~~~~~~~~D~~G~~~~~~-----~~~-~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 123 (175)
...+.+.++||+|...... +.. .....+|.+++|.|.+....-.+. ...+... -.+..+|.||.|..
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~----a~~f~~~--~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ----ALAFKEA--TPIGSIIVTKLDGS 252 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH----HHHHHHS--CTTEEEEEECCSSC
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH----HHHHHhh--CCCeEEEEECCCCc
Confidence 0125688999999533211 000 112357899999998765432222 2233321 23557999999986
Q ss_pred cc
Q 030525 124 DD 125 (175)
Q Consensus 124 ~~ 125 (175)
..
T Consensus 253 ~~ 254 (443)
T 3dm5_A 253 AK 254 (443)
T ss_dssp SS
T ss_pred cc
Confidence 54
No 226
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.62 E-value=1e-05 Score=64.04 Aligned_cols=57 Identities=19% Similarity=0.394 Sum_probs=45.5
Q ss_pred CcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 63 G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
..++|+.....+.+.++++++|+|++++. ..|...+.+...+.|+++|+||+|+.+.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~------~~~~~~l~~~~~~~p~ilV~NK~DL~~~ 111 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN------GSWLPGLHRFVGNNKVLLVGNKADLIPK 111 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH------HHCCTTHHHHSSSSCEEEEEECGGGSCT
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc------ccHHHHHHHHhCCCcEEEEEEChhcCCc
Confidence 35678888888889999999999998853 4566666666668999999999999654
No 227
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.44 E-value=6.5e-05 Score=54.23 Aligned_cols=28 Identities=29% Similarity=0.271 Sum_probs=21.7
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHhhc
Q 030525 1 MSASRFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 1 m~~~~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
|..++...|.|+|++|||||||++.+.+
T Consensus 1 ~~~~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 1 MSAPKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp ----CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 6666677899999999999999988875
No 228
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.43 E-value=8.2e-05 Score=52.80 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
+++++|++|+|||||++.+.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988853
No 229
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.41 E-value=8.1e-05 Score=52.66 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
-++++|++|||||||++.+...
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999863
No 230
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.41 E-value=0.00015 Score=58.67 Aligned_cols=24 Identities=13% Similarity=0.126 Sum_probs=21.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
+..-|.|+|++++|||+|+|++++
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhh
Confidence 456789999999999999999985
No 231
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.37 E-value=2e-05 Score=62.31 Aligned_cols=57 Identities=23% Similarity=0.382 Sum_probs=43.8
Q ss_pred CcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 63 G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
.+++|++....++.+++++++|+|++++.+ .|.+.+.+...+.|+++|+||+|+.+.
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~------s~~~~l~~~l~~~piilV~NK~DLl~~ 113 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG------SFIPGLPRFAADNPILLVGNKADLLPR 113 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG------GCCSSHHHHCTTSCEEEEEECGGGSCT
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC------chhhHHHHHhCCCCEEEEEEChhcCCC
Confidence 477888888788899999999999998763 344444444458899999999999754
No 232
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.37 E-value=0.00011 Score=52.64 Aligned_cols=30 Identities=20% Similarity=0.202 Sum_probs=23.1
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHhhcCC
Q 030525 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNT 30 (175)
Q Consensus 1 m~~~~~~ki~v~G~~~~GKTsli~~l~~~~ 30 (175)
|+-...-.++++|++||||||+++.+...-
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 555556689999999999999999988643
No 233
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.34 E-value=0.0001 Score=52.97 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHhhc
Q 030525 7 IKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~ 28 (175)
-.++|+|++|||||||++.+.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999875
No 234
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.33 E-value=0.00013 Score=52.40 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=20.9
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhc
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
.+..-.|+++|++||||||+++.+..
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34455799999999999999998874
No 235
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.28 E-value=0.00018 Score=50.94 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=23.7
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHhhcC
Q 030525 1 MSASRFIKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 1 m~~~~~~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
|..++..+|+++|++||||||+.+.|...
T Consensus 5 ~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 5 MEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp -CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45556678999999999999999888753
No 236
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.27 E-value=0.00019 Score=51.79 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=21.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcC
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
+.--++++|++|||||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3346899999999999999999853
No 237
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.26 E-value=0.00019 Score=50.67 Aligned_cols=28 Identities=18% Similarity=0.146 Sum_probs=24.5
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHhhc
Q 030525 1 MSASRFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 1 m~~~~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
|+.+....|++.|.+||||||+.+.|..
T Consensus 1 m~~~~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 1 MEKSKPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCCCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCcCcEEEEECCCCCCHHHHHHHHHH
Confidence 7776677899999999999999998874
No 238
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.25 E-value=0.00015 Score=51.52 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHhhc
Q 030525 9 CVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 9 i~v~G~~~~GKTsli~~l~~ 28 (175)
++++|++|||||||++.+.+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999999985
No 239
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.24 E-value=0.00016 Score=51.70 Aligned_cols=22 Identities=14% Similarity=0.228 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
-++++|++|||||||++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999864
No 240
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.23 E-value=0.00018 Score=51.48 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHhhcC
Q 030525 9 CVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 9 i~v~G~~~~GKTsli~~l~~~ 29 (175)
|+|+||+|||||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999853
No 241
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.22 E-value=0.00017 Score=50.60 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=17.5
Q ss_pred EEEEECCCCCCHHHHHHHhh
Q 030525 8 KCVTVGDGAVGKTCMLISYT 27 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~ 27 (175)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999644
No 242
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.21 E-value=0.00019 Score=52.67 Aligned_cols=23 Identities=9% Similarity=0.222 Sum_probs=20.3
Q ss_pred eEEEEECCCCCCHHHHHHHhhcC
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
--++|+|++|||||||++.+.+.
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 36889999999999999998864
No 243
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.20 E-value=0.00021 Score=50.57 Aligned_cols=25 Identities=12% Similarity=0.013 Sum_probs=21.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcC
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
+.-.++++|++||||||+++.+.+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3446899999999999999999874
No 244
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.20 E-value=9.9e-05 Score=56.91 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|||||||+|.+.+.
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHhccc
Confidence 6899999999999999999864
No 245
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.17 E-value=0.0002 Score=51.66 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
-++++|++|||||||++.+.+-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999998853
No 246
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.16 E-value=0.00022 Score=51.60 Aligned_cols=24 Identities=21% Similarity=0.151 Sum_probs=20.8
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcC
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.--|+++|++||||||+++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 345889999999999999999864
No 247
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.14 E-value=0.00036 Score=48.73 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=20.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
..-.++++|++||||||+.+.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 355799999999999999998864
No 248
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.14 E-value=0.00023 Score=51.99 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++|+|++|||||||++.+.+-
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5889999999999999998863
No 249
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.13 E-value=0.00059 Score=52.34 Aligned_cols=20 Identities=35% Similarity=0.665 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHhh
Q 030525 8 KCVTVGDGAVGKTCMLISYT 27 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~ 27 (175)
.++++|++|||||||+|.+.
T Consensus 167 i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999998
No 250
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.12 E-value=0.0003 Score=50.83 Aligned_cols=25 Identities=12% Similarity=0.069 Sum_probs=21.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
+....+.|+|++|||||||++.+.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999988874
No 251
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.12 E-value=0.00024 Score=51.10 Aligned_cols=28 Identities=25% Similarity=0.147 Sum_probs=22.1
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHhhc
Q 030525 1 MSASRFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 1 m~~~~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
|...+...|++.|.+||||||+.+.|..
T Consensus 4 m~~~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 4 MAARRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp ---CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4434567899999999999999999874
No 252
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.09 E-value=0.0003 Score=50.61 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=20.5
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcC
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
..-|+++|++||||||+++.+...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 345899999999999999999753
No 253
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.07 E-value=0.00032 Score=48.47 Aligned_cols=19 Identities=16% Similarity=0.079 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHh
Q 030525 8 KCVTVGDGAVGKTCMLISY 26 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l 26 (175)
.|+++|++||||||+.+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999999
No 254
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.06 E-value=0.00014 Score=55.37 Aligned_cols=61 Identities=16% Similarity=0.077 Sum_probs=40.4
Q ss_pred EEeCCCcc-cccccccccccCccEEEEEEECCChhhHHH-HHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 58 LWDTAGQE-DYNRLRPLSYRGADVFILAFSLISKASYEN-VAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 58 ~~D~~G~~-~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
+-..||+. .........+..+|+++.|+|+.++.+..+ ....|+ .+.|.++|+||+|+.+.
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-------~~kp~ilVlNK~DL~~~ 65 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-------KNKPRIMLLNKADKADA 65 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-------SSSCEEEEEECGGGSCH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-------CCCCEEEEEECcccCCH
Confidence 44578875 333334467899999999999999877653 113332 47899999999999864
No 255
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.05 E-value=0.00037 Score=48.25 Aligned_cols=21 Identities=10% Similarity=0.058 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHhhc
Q 030525 8 KCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~ 28 (175)
.|++.|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999874
No 256
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.03 E-value=0.00034 Score=51.77 Aligned_cols=22 Identities=23% Similarity=0.188 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|||||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999988763
No 257
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.03 E-value=0.00045 Score=48.16 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHhhc
Q 030525 7 IKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~ 28 (175)
..|++.|++||||||+.+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 258
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.01 E-value=0.00038 Score=48.39 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHhhcC
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
..|+++|++||||||+.+.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999988763
No 259
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.01 E-value=0.00038 Score=48.41 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHhhcCC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNT 30 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~ 30 (175)
-++++|+.|+|||||++.+.+.-
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58899999999999999988644
No 260
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.99 E-value=0.00041 Score=49.11 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHhhc
Q 030525 8 KCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~ 28 (175)
-++++|++||||||+++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 261
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.98 E-value=0.00045 Score=51.13 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCCHHHHHHHhh
Q 030525 6 FIKCVTVGDGAVGKTCMLISYT 27 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~ 27 (175)
.-.|+|+|++||||||+++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999998
No 262
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.96 E-value=0.00054 Score=49.05 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCCHHHHHHHhhc
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
.-.|+++|++||||||+.+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34799999999999999998874
No 263
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.95 E-value=0.00068 Score=48.45 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=21.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
.....|++.|++||||||+.+.+..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999988874
No 264
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.94 E-value=0.00054 Score=49.78 Aligned_cols=23 Identities=13% Similarity=0.072 Sum_probs=20.3
Q ss_pred eeEEEEECCCCCCHHHHHHHhhc
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
..+|+++|++||||||+.+.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999988864
No 265
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.93 E-value=0.00051 Score=49.60 Aligned_cols=21 Identities=19% Similarity=0.120 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHhhc
Q 030525 8 KCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~ 28 (175)
+|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999864
No 266
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.93 E-value=0.00068 Score=47.65 Aligned_cols=24 Identities=13% Similarity=0.043 Sum_probs=20.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
....|+++|++||||||+.+.+..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999874
No 267
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.92 E-value=0.00049 Score=54.14 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHhhcCC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNT 30 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~ 30 (175)
.++++|++|||||||+|.+.+..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 58999999999999999999754
No 268
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.92 E-value=0.00052 Score=51.00 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|+|||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998864
No 269
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.91 E-value=0.00056 Score=49.42 Aligned_cols=21 Identities=19% Similarity=0.066 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHhhc
Q 030525 8 KCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~ 28 (175)
+|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999864
No 270
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.91 E-value=0.00043 Score=50.84 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|+|||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988764
No 271
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.91 E-value=0.00047 Score=50.36 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=20.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
++...|++.|++||||||+.+.|..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999998874
No 272
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.90 E-value=0.00054 Score=47.84 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHhhc
Q 030525 7 IKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~ 28 (175)
..|++.|++||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999886
No 273
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.90 E-value=0.00054 Score=50.01 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|+|||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998764
No 274
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.89 E-value=0.00053 Score=52.02 Aligned_cols=22 Identities=18% Similarity=0.424 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|||||||++.+.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999988864
No 275
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.89 E-value=0.00054 Score=49.05 Aligned_cols=22 Identities=18% Similarity=0.157 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHhhc
Q 030525 7 IKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~ 28 (175)
..|+++|++||||||+.+.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998874
No 276
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.89 E-value=0.00075 Score=50.04 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=22.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
.+..+|++.|++||||||+.++|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999974
No 277
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.89 E-value=0.00054 Score=51.55 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
-++++|++|||||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998864
No 278
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.89 E-value=0.00076 Score=48.20 Aligned_cols=25 Identities=12% Similarity=0.302 Sum_probs=21.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
.....|++.|++||||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999998875
No 279
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.88 E-value=0.00045 Score=49.49 Aligned_cols=24 Identities=13% Similarity=0.094 Sum_probs=20.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
+.-.|+++|++|+||||+.+.+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 445799999999999999988875
No 280
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.87 E-value=0.00075 Score=48.13 Aligned_cols=25 Identities=24% Similarity=0.117 Sum_probs=21.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcC
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
+...|++.|++||||||+++.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999864
No 281
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.87 E-value=0.00053 Score=49.05 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHhhc
Q 030525 8 KCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~ 28 (175)
.++++|++|+|||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 478999999999999988875
No 282
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.87 E-value=0.00052 Score=48.22 Aligned_cols=24 Identities=25% Similarity=0.198 Sum_probs=20.5
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcC
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.-.++++|++|+|||+|++.+.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999888753
No 283
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.87 E-value=0.00063 Score=50.39 Aligned_cols=22 Identities=23% Similarity=0.370 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998764
No 284
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.86 E-value=0.00069 Score=48.17 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHhhc
Q 030525 8 KCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~ 28 (175)
.|++.|++||||||+.+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998875
No 285
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.86 E-value=0.0006 Score=51.45 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.+.++|++|+|||||++.+.+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999998864
No 286
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.86 E-value=0.0006 Score=50.08 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHhh
Q 030525 8 KCVTVGDGAVGKTCMLISYT 27 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~ 27 (175)
-++++|++|+|||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999877
No 287
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.86 E-value=0.00058 Score=51.19 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998864
No 288
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.85 E-value=0.00067 Score=50.39 Aligned_cols=22 Identities=14% Similarity=0.098 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999998853
No 289
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.84 E-value=0.00075 Score=47.49 Aligned_cols=22 Identities=23% Similarity=0.071 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHhhc
Q 030525 7 IKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~ 28 (175)
..|++.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998874
No 290
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.84 E-value=0.00067 Score=47.89 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=20.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
....|++.|.+||||||+.+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998874
No 291
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.84 E-value=0.00074 Score=47.36 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCCHHHHHHHhhc
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
...|+++|++||||||+.+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45699999999999999998873
No 292
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.84 E-value=0.0006 Score=48.01 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHhhc
Q 030525 8 KCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~ 28 (175)
.|+|.|++||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998875
No 293
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.84 E-value=0.0006 Score=51.27 Aligned_cols=21 Identities=19% Similarity=0.272 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHhhc
Q 030525 8 KCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~ 28 (175)
.++|+|++|||||||++.+.+
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 589999999999999998875
No 294
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.83 E-value=0.00069 Score=50.49 Aligned_cols=22 Identities=18% Similarity=0.108 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|+|||||++.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998764
No 295
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.83 E-value=0.00065 Score=50.02 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|+|||||++.+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998864
No 296
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.83 E-value=0.00072 Score=47.74 Aligned_cols=23 Identities=17% Similarity=0.062 Sum_probs=20.3
Q ss_pred eEEEEECCCCCCHHHHHHHhhcC
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
--++++|++|+|||||++++...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 35889999999999999999864
No 297
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.82 E-value=0.00065 Score=50.38 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|+|||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998864
No 298
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.82 E-value=0.00067 Score=51.11 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|+|||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 4789999999999999998864
No 299
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.81 E-value=0.00069 Score=50.62 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999998764
No 300
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.80 E-value=0.00069 Score=50.81 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|+|||||++.+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998864
No 301
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.80 E-value=0.00094 Score=47.78 Aligned_cols=23 Identities=13% Similarity=0.005 Sum_probs=20.7
Q ss_pred eeEEEEECCCCCCHHHHHHHhhc
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
...|++.|++||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999875
No 302
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.80 E-value=0.00055 Score=49.77 Aligned_cols=25 Identities=20% Similarity=0.147 Sum_probs=21.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
+....|+++|++||||||+.+.+..
T Consensus 3 ~~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 3 ADPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999998874
No 303
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.80 E-value=0.00082 Score=49.97 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=21.5
Q ss_pred CCceeEEEEECCCCCCHHHHHHHhhc
Q 030525 3 ASRFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 3 ~~~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
..+.+.|+|.|++||||||+.+.|..
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999988864
No 304
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.79 E-value=0.00083 Score=47.22 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCCHHHHHHHhhc
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
...|+++|++||||||+.+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999864
No 305
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.79 E-value=0.00098 Score=50.74 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=21.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
....-|++.|++||||||+...+..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999974
No 306
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.79 E-value=0.00073 Score=50.41 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998874
No 307
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.79 E-value=0.00086 Score=48.67 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=21.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
+..+|+++|++||||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998875
No 308
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.78 E-value=0.00093 Score=47.08 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=20.3
Q ss_pred eeEEEEECCCCCCHHHHHHHhhc
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
...|++.|.+||||||+.+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999988864
No 309
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.78 E-value=0.002 Score=49.64 Aligned_cols=54 Identities=20% Similarity=0.262 Sum_probs=40.2
Q ss_pred cccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 70 LRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 70 ~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
+.+..+.++|.+++|.|+.++..-.+....++..+.. .++|.++|.||+||.++
T Consensus 79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~--~~~~~vivlnK~DL~~~ 132 (307)
T 1t9h_A 79 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA--NDIQPIICITKMDLIED 132 (307)
T ss_dssp ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT--TTCEEEEEEECGGGCCC
T ss_pred hhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECCccCch
Confidence 4445688999999999999775333343666655554 47899999999999765
No 310
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.78 E-value=0.00056 Score=49.71 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998864
No 311
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.78 E-value=0.00075 Score=50.88 Aligned_cols=22 Identities=14% Similarity=0.265 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998874
No 312
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.77 E-value=0.00083 Score=50.46 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++|+|++|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5889999999999999998864
No 313
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.76 E-value=0.00099 Score=47.74 Aligned_cols=22 Identities=23% Similarity=0.163 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHhhc
Q 030525 7 IKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~ 28 (175)
..|+++|++||||||+.+.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 314
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.76 E-value=0.00084 Score=50.97 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|+|||||++.+.+-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999998864
No 315
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.76 E-value=0.0005 Score=50.35 Aligned_cols=22 Identities=18% Similarity=0.110 Sum_probs=14.9
Q ss_pred EEEEECCCCCCHHHHHHHhh-cC
Q 030525 8 KCVTVGDGAVGKTCMLISYT-SN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~-~~ 29 (175)
-++++|++||||||+++.+. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999998 53
No 316
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.75 E-value=0.00077 Score=50.95 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++|+|++|+|||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998864
No 317
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.75 E-value=0.00071 Score=48.40 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHhhc
Q 030525 7 IKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~ 28 (175)
.+|+|+|++||||||+.+.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999998875
No 318
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.75 E-value=0.00092 Score=48.48 Aligned_cols=21 Identities=19% Similarity=0.140 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHhhc
Q 030525 8 KCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~ 28 (175)
+|+++|+|||||+|...++..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998885
No 319
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.74 E-value=0.00081 Score=50.33 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|+|||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998864
No 320
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.73 E-value=0.00084 Score=51.66 Aligned_cols=22 Identities=18% Similarity=0.126 Sum_probs=19.7
Q ss_pred eEEEEECCCCCCHHHHHHHhhc
Q 030525 7 IKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~ 28 (175)
=.++|+|++|+|||||++.+.+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhh
Confidence 3689999999999999998875
No 321
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.72 E-value=0.00084 Score=50.56 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999998764
No 322
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.72 E-value=0.001 Score=49.18 Aligned_cols=24 Identities=21% Similarity=0.122 Sum_probs=20.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
+...|.|+|++|||||||++.+.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 445799999999999999998875
No 323
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.71 E-value=0.0012 Score=50.95 Aligned_cols=25 Identities=20% Similarity=0.076 Sum_probs=21.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
+...-+.|+|++|||||||++.+.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3456799999999999999998875
No 324
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.70 E-value=0.0011 Score=46.12 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=20.5
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcC
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.-.+++.|++|+|||++++.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999888753
No 325
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.70 E-value=0.00099 Score=47.76 Aligned_cols=24 Identities=17% Similarity=-0.065 Sum_probs=21.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
+...|++.|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999998874
No 326
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.69 E-value=0.0011 Score=50.72 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHhhcCC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNT 30 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~ 30 (175)
.++++|++|||||||++.+.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 57899999999999999998653
No 327
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.69 E-value=0.00097 Score=46.56 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHhhc
Q 030525 8 KCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~ 28 (175)
+|+++|++||||||+.+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998874
No 328
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.69 E-value=0.00074 Score=48.96 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHhhc
Q 030525 8 KCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~ 28 (175)
-++++|++|+|||||++.+..
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999986
No 329
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.68 E-value=0.00072 Score=47.35 Aligned_cols=24 Identities=25% Similarity=0.054 Sum_probs=16.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
+...|++.|.+||||||+.+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999874
No 330
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.67 E-value=0.0012 Score=47.37 Aligned_cols=25 Identities=16% Similarity=0.112 Sum_probs=21.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcC
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
....|+|+|++||||||+.+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4567999999999999999998864
No 331
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.67 E-value=0.0011 Score=49.91 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHhhcCC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNT 30 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~ 30 (175)
.++++|++|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999988654
No 332
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.66 E-value=0.00093 Score=48.32 Aligned_cols=21 Identities=14% Similarity=0.166 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHhhc
Q 030525 8 KCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~ 28 (175)
+|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998875
No 333
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.64 E-value=0.0013 Score=47.21 Aligned_cols=25 Identities=16% Similarity=0.050 Sum_probs=21.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
+...-|.|+|++||||||+++.+..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999988874
No 334
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.64 E-value=0.0014 Score=47.35 Aligned_cols=24 Identities=13% Similarity=0.113 Sum_probs=21.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
+...|+|.|.+||||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998875
No 335
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.62 E-value=0.0015 Score=49.88 Aligned_cols=24 Identities=17% Similarity=0.047 Sum_probs=21.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHhh
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYT 27 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~ 27 (175)
.....|.|+|++|||||||++.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999998766
No 336
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.61 E-value=0.0015 Score=50.56 Aligned_cols=24 Identities=21% Similarity=0.016 Sum_probs=21.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHhh
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYT 27 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~ 27 (175)
..++-|.|+|++|||||||++.+.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999998876
No 337
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.61 E-value=0.0011 Score=46.76 Aligned_cols=24 Identities=17% Similarity=0.074 Sum_probs=20.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
+...|++.|++||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998874
No 338
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.61 E-value=0.00089 Score=52.59 Aligned_cols=23 Identities=13% Similarity=0.261 Sum_probs=20.6
Q ss_pred eeEEEEECCCCCCHHHHHHHhhc
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
.-+++|+|++|+|||||++.+.+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998875
No 339
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.60 E-value=0.0011 Score=48.07 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=21.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
.+..+|+++|.+||||||+.+.|..
T Consensus 3 ~~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 3 SKKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GGCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998864
No 340
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.58 E-value=0.0013 Score=46.70 Aligned_cols=26 Identities=19% Similarity=0.058 Sum_probs=22.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcC
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
++...|+|.|.+||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45678999999999999999998864
No 341
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.58 E-value=0.0015 Score=45.13 Aligned_cols=21 Identities=14% Similarity=0.094 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHhhc
Q 030525 8 KCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~ 28 (175)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998875
No 342
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.57 E-value=0.0015 Score=47.68 Aligned_cols=21 Identities=14% Similarity=0.069 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHhhc
Q 030525 8 KCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~ 28 (175)
.|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998874
No 343
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.56 E-value=0.0021 Score=45.30 Aligned_cols=24 Identities=21% Similarity=0.138 Sum_probs=20.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
+...|+++|.+||||||+.+.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 456799999999999999998874
No 344
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.55 E-value=0.0012 Score=51.83 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHhhc
Q 030525 8 KCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~ 28 (175)
.++|+|++|||||||++.+.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 789999999999999998874
No 345
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.55 E-value=0.0018 Score=48.27 Aligned_cols=22 Identities=14% Similarity=0.084 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCCHHHHHHHhh
Q 030525 6 FIKCVTVGDGAVGKTCMLISYT 27 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~ 27 (175)
...|.|+|++||||||+++.+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999887
No 346
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.53 E-value=0.00099 Score=45.71 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|+|||+|++.+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998863
No 347
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.52 E-value=0.0015 Score=48.79 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHhhc
Q 030525 8 KCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~ 28 (175)
-|+|+|++|||||||...+..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999874
No 348
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.51 E-value=0.0016 Score=45.74 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=19.7
Q ss_pred eEEEEECCCCCCHHHHHHHhhc
Q 030525 7 IKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~ 28 (175)
..+.++|.+|||||||+.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999885
No 349
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.51 E-value=0.0015 Score=46.23 Aligned_cols=21 Identities=14% Similarity=0.055 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHhhc
Q 030525 8 KCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~ 28 (175)
-|++.|++||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999875
No 350
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.50 E-value=0.0014 Score=48.48 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|+|||+|++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 351
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.48 E-value=0.0018 Score=45.62 Aligned_cols=21 Identities=19% Similarity=0.020 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHhhc
Q 030525 8 KCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~ 28 (175)
.|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998875
No 352
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.48 E-value=0.00057 Score=48.13 Aligned_cols=21 Identities=24% Similarity=0.321 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHhhc
Q 030525 8 KCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~ 28 (175)
.+.|+|++|||||||++.+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999998885
No 353
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.48 E-value=0.0014 Score=48.85 Aligned_cols=25 Identities=20% Similarity=0.165 Sum_probs=21.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
.....|+++|++||||||+.+.+..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998864
No 354
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.48 E-value=0.0019 Score=47.31 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=20.7
Q ss_pred eeEEEEECCCCCCHHHHHHHhhc
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
..+|+++|.+||||||+.+.|..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998875
No 355
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.47 E-value=0.00094 Score=51.42 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHhhc
Q 030525 8 KCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~ 28 (175)
.++|+|++|+|||||++.+.+
T Consensus 82 ~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTT
T ss_pred EEEEECCCCchHHHHHHHHHc
Confidence 689999999999999988875
No 356
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.47 E-value=0.0014 Score=50.08 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|+|||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999998764
No 357
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.46 E-value=0.0012 Score=46.75 Aligned_cols=23 Identities=13% Similarity=0.066 Sum_probs=20.5
Q ss_pred eeEEEEECCCCCCHHHHHHHhhc
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
...|++.|++||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999988875
No 358
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.46 E-value=0.002 Score=48.14 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=20.3
Q ss_pred eeEEEEECCCCCCHHHHHHHhhc
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
...|+++|.+||||||+.+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999998874
No 359
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.46 E-value=0.0015 Score=49.30 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|+|||+|++.+.+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3999999999999999998863
No 360
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.45 E-value=0.0017 Score=51.25 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
-+.++|++|||||||++.+.+-
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHhcC
Confidence 4789999999999999888864
No 361
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.45 E-value=0.0017 Score=46.92 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHhhc
Q 030525 8 KCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~ 28 (175)
-++++|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999998883
No 362
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.44 E-value=0.0014 Score=45.57 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=20.5
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcC
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.-.+++.|++|+|||++++.+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 446899999999999999888753
No 363
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.43 E-value=0.0016 Score=50.05 Aligned_cols=22 Identities=27% Similarity=0.246 Sum_probs=19.7
Q ss_pred eeEEEEECCCCCCHHHHHHHhh
Q 030525 6 FIKCVTVGDGAVGKTCMLISYT 27 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~ 27 (175)
.-.++++|++||||||+++.+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 4478999999999999999887
No 364
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.43 E-value=0.0017 Score=51.04 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
-++++|++|||||||++.+.+-
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999998864
No 365
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.41 E-value=0.0014 Score=51.52 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHhhcCC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNT 30 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~ 30 (175)
-++++|++|||||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999988743
No 366
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.41 E-value=0.0018 Score=51.19 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHhhc
Q 030525 7 IKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~ 28 (175)
=.++|+|++||||||+++.+.+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999998885
No 367
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.41 E-value=0.002 Score=47.09 Aligned_cols=20 Identities=15% Similarity=0.147 Sum_probs=17.7
Q ss_pred EEEECCCCCCHHHHHHHhhc
Q 030525 9 CVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 9 i~v~G~~~~GKTsli~~l~~ 28 (175)
|+++|+|||||+|...++..
T Consensus 32 I~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56789999999999988874
No 368
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.40 E-value=0.0019 Score=44.70 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHhhc
Q 030525 8 KCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~ 28 (175)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998875
No 369
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.40 E-value=0.0018 Score=50.95 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
-++++|++|||||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 4789999999999999998864
No 370
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.40 E-value=0.0018 Score=50.96 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
-++++|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 4789999999999999998864
No 371
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.38 E-value=0.0022 Score=46.55 Aligned_cols=23 Identities=13% Similarity=0.094 Sum_probs=20.4
Q ss_pred eeEEEEECCCCCCHHHHHHHhhc
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
.-.+++.|++|+|||++++.+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998875
No 372
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.38 E-value=0.0019 Score=49.61 Aligned_cols=23 Identities=26% Similarity=0.128 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCCHHHHHHHhhc
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
.--++++|++||||||++..+.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34689999999999999988873
No 373
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.38 E-value=0.0019 Score=51.18 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
-++++|++|||||||++.+.+-
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHcC
Confidence 4789999999999999998864
No 374
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.38 E-value=0.0021 Score=48.65 Aligned_cols=24 Identities=17% Similarity=0.102 Sum_probs=21.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHhh
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYT 27 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~ 27 (175)
+....|+|.|.+||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 346789999999999999999886
No 375
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.37 E-value=0.0017 Score=50.50 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++|+|++|+|||||++.+.+-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999864
No 376
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.36 E-value=0.0023 Score=44.23 Aligned_cols=22 Identities=18% Similarity=0.132 Sum_probs=19.6
Q ss_pred eEEEEECCCCCCHHHHHHHhhc
Q 030525 7 IKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~ 28 (175)
-+|++.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999998864
No 377
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.36 E-value=0.00061 Score=48.97 Aligned_cols=21 Identities=14% Similarity=0.189 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHhhc
Q 030525 8 KCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~ 28 (175)
-|+|.|++||||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999999874
No 378
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.36 E-value=0.0016 Score=51.22 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++|+|++|+|||||++.+.+-
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7899999999999999999864
No 379
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.35 E-value=0.002 Score=50.96 Aligned_cols=22 Identities=23% Similarity=0.227 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
-++++|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCcHHHHHHHHHHcC
Confidence 4789999999999999998864
No 380
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.34 E-value=0.0021 Score=50.83 Aligned_cols=22 Identities=27% Similarity=0.223 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
-++++|++|||||||++.+.+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 4789999999999999998864
No 381
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.32 E-value=0.0022 Score=49.20 Aligned_cols=24 Identities=21% Similarity=0.068 Sum_probs=21.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
...-|.|+|++|||||||++.+.+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999998875
No 382
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.32 E-value=0.0026 Score=46.62 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=21.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcC
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
+..-|+|.|+.||||||+++.+.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3457899999999999999998864
No 383
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.32 E-value=0.0023 Score=44.93 Aligned_cols=21 Identities=29% Similarity=0.267 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHhhc
Q 030525 8 KCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~ 28 (175)
.|+++|.+||||||+...|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999988864
No 384
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.31 E-value=0.0021 Score=48.31 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|+|||+|++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 4899999999999999999864
No 385
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.31 E-value=0.002 Score=51.67 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++|+|++||||||+++.+++.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998863
No 386
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.31 E-value=0.0019 Score=45.19 Aligned_cols=21 Identities=19% Similarity=0.088 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHhhc
Q 030525 8 KCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~ 28 (175)
-.+|+|++|+|||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999998863
No 387
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.29 E-value=0.0021 Score=49.86 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999998863
No 388
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.29 E-value=0.0026 Score=47.02 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=20.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
...+.|+|.|++||||||+.+.+..
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999998873
No 389
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.29 E-value=0.0026 Score=45.33 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHhhcC
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
-.+++.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988853
No 390
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.27 E-value=0.0031 Score=48.97 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=21.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
+.--++++|++||||||++..+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998874
No 391
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.26 E-value=0.0029 Score=49.83 Aligned_cols=24 Identities=29% Similarity=0.574 Sum_probs=20.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHhh
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYT 27 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~ 27 (175)
.+..||+++|.+||||||++.++.
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHH
Confidence 457899999999999999997754
No 392
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.24 E-value=0.0033 Score=43.94 Aligned_cols=23 Identities=17% Similarity=0.125 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCCHHHHHHHhhc
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
...|+++|.+||||||+.+.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999988875
No 393
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.24 E-value=0.0028 Score=46.97 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=20.8
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcC
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.-.++++|++|+|||++++.+.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999998853
No 394
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.24 E-value=0.0037 Score=45.88 Aligned_cols=24 Identities=17% Similarity=0.019 Sum_probs=21.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
+..-|++.|++||||||+++++..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 456799999999999999999875
No 395
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.23 E-value=0.00069 Score=50.96 Aligned_cols=57 Identities=12% Similarity=0.111 Sum_probs=37.2
Q ss_pred CCCccc-ccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCccc
Q 030525 61 TAGQED-YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (175)
Q Consensus 61 ~~G~~~-~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 125 (175)
.||+.. ........+.++|+++.|+|+.++.+..+. . +. .. +.|.++|.||+|+.+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~-~-----l~-ll-~k~~iivlNK~DL~~~ 61 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY-G-----VD-FS-RKETIILLNKVDIADE 61 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT-T-----SC-CT-TSEEEEEEECGGGSCH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh-H-----HH-hc-CCCcEEEEECccCCCH
Confidence 467642 222334668999999999999988766542 1 11 11 6899999999999865
No 396
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.22 E-value=0.0028 Score=45.55 Aligned_cols=21 Identities=24% Similarity=0.151 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHhhc
Q 030525 8 KCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~ 28 (175)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999986
No 397
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.20 E-value=0.0029 Score=46.20 Aligned_cols=22 Identities=18% Similarity=0.135 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
-++++|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999863
No 398
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.20 E-value=0.0028 Score=45.67 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHhhc
Q 030525 8 KCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~ 28 (175)
-+++.|++|+|||++++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998874
No 399
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.18 E-value=0.0017 Score=50.90 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
-++++|++|+|||||++.+.+-
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 4789999999999999998864
No 400
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.18 E-value=0.0021 Score=52.87 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHhhcCC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNT 30 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~ 30 (175)
.++|+|++||||||+++.+.+--
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999998643
No 401
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.16 E-value=0.0017 Score=49.47 Aligned_cols=27 Identities=15% Similarity=0.271 Sum_probs=18.4
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHhhc
Q 030525 1 MSASRFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 1 m~~~~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
|+. +..-|+|.|++||||||+.+.|..
T Consensus 1 Ms~-~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 1 MSK-KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp -CT-TSCEEEEESCC---CCTHHHHHHH
T ss_pred CCC-CceEEEEECCCCCCHHHHHHHHHH
Confidence 554 445699999999999999988764
No 402
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.16 E-value=0.014 Score=45.88 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=17.3
Q ss_pred EEEECCCCCCHHHHHHHhh
Q 030525 9 CVTVGDGAVGKTCMLISYT 27 (175)
Q Consensus 9 i~v~G~~~~GKTsli~~l~ 27 (175)
.+|+|++|+|||||++.++
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5599999999999999877
No 403
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.16 E-value=0.0034 Score=42.97 Aligned_cols=19 Identities=21% Similarity=0.412 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHhh
Q 030525 9 CVTVGDGAVGKTCMLISYT 27 (175)
Q Consensus 9 i~v~G~~~~GKTsli~~l~ 27 (175)
.+|+|++|+||||++..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4789999999999998876
No 404
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.15 E-value=0.0032 Score=44.83 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.+++.|++|+|||++++.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999988753
No 405
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.11 E-value=0.0034 Score=42.54 Aligned_cols=26 Identities=12% Similarity=-0.074 Sum_probs=22.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcCC
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSNT 30 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~~ 30 (175)
....|++.|++|+|||++.+.+....
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 44579999999999999999998754
No 406
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.09 E-value=0.0044 Score=44.63 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=20.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
....|+++|.+||||||+.+.+..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999988764
No 407
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.08 E-value=0.0027 Score=50.51 Aligned_cols=21 Identities=19% Similarity=0.400 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHhhc
Q 030525 8 KCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~ 28 (175)
.+.++|++|+|||||++.+.+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhC
Confidence 578999999999999998875
No 408
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.08 E-value=0.0031 Score=47.05 Aligned_cols=22 Identities=23% Similarity=0.043 Sum_probs=19.6
Q ss_pred eEEEEECCCCCCHHHHHHHhhc
Q 030525 7 IKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~ 28 (175)
-+|+++|++|+||||+.+.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999988864
No 409
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.08 E-value=0.0046 Score=47.88 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHhhc
Q 030525 7 IKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~ 28 (175)
..|+|+|++|||||||...+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998874
No 410
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.07 E-value=0.0028 Score=48.08 Aligned_cols=21 Identities=10% Similarity=0.170 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHhhc
Q 030525 8 KCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~ 28 (175)
-++|+|++|+|||||+..+..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 478999999999999988774
No 411
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.07 E-value=0.0021 Score=49.59 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
-++|+|..|||||||++.+.+.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 5689999999999999999965
No 412
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.06 E-value=0.0036 Score=47.46 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHhhc
Q 030525 7 IKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~ 28 (175)
..|++.|.+||||||+.+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999885
No 413
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.01 E-value=0.0017 Score=51.04 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
-++++|++|+|||||++.+.+-
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999998864
No 414
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.00 E-value=0.0056 Score=48.13 Aligned_cols=23 Identities=26% Similarity=0.128 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCCHHHHHHHhhc
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
.--++++|++||||||++..+..
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 34689999999999999988874
No 415
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.99 E-value=0.0027 Score=51.58 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHhhc
Q 030525 8 KCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~ 28 (175)
.++|+|++|||||||++.+.+
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999998885
No 416
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.99 E-value=0.0047 Score=48.20 Aligned_cols=22 Identities=36% Similarity=0.365 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHhhc
Q 030525 7 IKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~ 28 (175)
.-|+|+|++|||||||...+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999998875
No 417
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.98 E-value=0.0037 Score=47.57 Aligned_cols=25 Identities=12% Similarity=-0.104 Sum_probs=21.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcC
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.+..+++.|+||+|||+|++.+...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457888899999999999998853
No 418
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.95 E-value=0.0036 Score=48.99 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHhhcCC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNT 30 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~ 30 (175)
++.++|++|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999998764
No 419
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.92 E-value=0.0045 Score=46.76 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=21.2
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcC
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.-.+++.|++|+|||++++.+...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999999999863
No 420
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.92 E-value=0.0051 Score=45.42 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=20.4
Q ss_pred eeEEEEECCCCCCHHHHHHHhhc
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
.-.+++.|++|+|||++++.+..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 44689999999999999999876
No 421
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.91 E-value=0.0047 Score=46.36 Aligned_cols=25 Identities=16% Similarity=0.115 Sum_probs=21.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcC
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
..-.+++.|++|+|||++++.+...
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3456999999999999999999764
No 422
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.90 E-value=0.0059 Score=49.98 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCCHHHHHHHhhc
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
.--++|+|++|||||||+..+.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 34689999999999999988873
No 423
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.88 E-value=0.0065 Score=45.41 Aligned_cols=26 Identities=15% Similarity=0.279 Sum_probs=22.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhcC
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
...-.+++.|++|+|||+++..+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45568999999999999999998864
No 424
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.87 E-value=0.0039 Score=45.29 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=19.3
Q ss_pred eEEEEECCCCCCHHHHHHHhhc
Q 030525 7 IKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~ 28 (175)
-.+++.|+||+|||+++.++..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999888875
No 425
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.86 E-value=0.0044 Score=47.54 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHhhcC
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
-.+++.|++|+|||+|++.+...
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999988853
No 426
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.86 E-value=0.0049 Score=46.73 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=19.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
....+++.|++|+|||++++.+..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999976553
No 427
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.84 E-value=0.0069 Score=43.06 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHhhc
Q 030525 8 KCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~ 28 (175)
.|.|.|++||||||+.+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988864
No 428
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.80 E-value=0.0046 Score=45.16 Aligned_cols=20 Identities=20% Similarity=0.272 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHhh
Q 030525 8 KCVTVGDGAVGKTCMLISYT 27 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~ 27 (175)
-++++|++|+|||+|+.++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999987776
No 429
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.79 E-value=0.0056 Score=50.66 Aligned_cols=22 Identities=18% Similarity=0.219 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|+|||||++.+.+-
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999998864
No 430
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.79 E-value=0.0066 Score=44.48 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=21.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHhhc
Q 030525 4 SRFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 4 ~~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
.....|+++|++||||||+.+.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3566899999999999999988874
No 431
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.79 E-value=0.005 Score=48.72 Aligned_cols=23 Identities=17% Similarity=0.028 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCCHHHHHHHhhc
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
.-.++++|++|+|||||++.+.+
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34789999999999999998885
No 432
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.78 E-value=0.0073 Score=44.27 Aligned_cols=28 Identities=14% Similarity=-0.018 Sum_probs=21.8
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHhhc
Q 030525 1 MSASRFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 1 m~~~~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
|...+..-|++.|.+||||||+++.+..
T Consensus 16 ~~~~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 16 TQGPGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp ---CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445567799999999999999988874
No 433
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.78 E-value=0.0072 Score=43.20 Aligned_cols=24 Identities=13% Similarity=0.105 Sum_probs=21.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
....|.+.|.+||||||+.+.|..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999988875
No 434
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.74 E-value=0.0076 Score=48.21 Aligned_cols=25 Identities=20% Similarity=0.142 Sum_probs=21.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcC
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
...-|+++|.+||||||+.+++...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3456899999999999999998753
No 435
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.74 E-value=0.0063 Score=43.94 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=21.0
Q ss_pred eEEEEECCCCCCHHHHHHHhhcCC
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSNT 30 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~~ 30 (175)
..|+|+|++|+|||+|...|....
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 358999999999999999998654
No 436
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.74 E-value=0.006 Score=46.51 Aligned_cols=24 Identities=17% Similarity=0.146 Sum_probs=20.9
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcC
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.-.+++.|++|+|||++++.+...
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 346999999999999999999864
No 437
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.74 E-value=0.0045 Score=48.08 Aligned_cols=23 Identities=22% Similarity=0.069 Sum_probs=20.4
Q ss_pred eeEEEEECCCCCCHHHHHHHhhc
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
.-.++|.|++|+|||+|++.+..
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 44689999999999999999885
No 438
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.73 E-value=0.0058 Score=50.97 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998863
No 439
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.73 E-value=0.0055 Score=50.74 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
-+.++|++|+|||||++.+.+-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999998864
No 440
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.73 E-value=0.0061 Score=47.52 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++|.|++|+|||++++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998864
No 441
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.72 E-value=0.0049 Score=46.39 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHhhc
Q 030525 8 KCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~ 28 (175)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999988874
No 442
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.72 E-value=0.0056 Score=50.01 Aligned_cols=21 Identities=14% Similarity=0.357 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHhhc
Q 030525 8 KCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~ 28 (175)
-++|+|++|+|||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999998884
No 443
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.71 E-value=0.005 Score=51.38 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 6899999999999999988763
No 444
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.69 E-value=0.006 Score=46.07 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=20.5
Q ss_pred eeEEEEECCCCCCHHHHHHHhhc
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
.-.+++.|++|+|||++++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998875
No 445
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.65 E-value=0.0093 Score=45.95 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCCHHHHHHHhhc
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
..-|+|+|++|||||+|...+..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHH
Confidence 34578999999999999999975
No 446
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.65 E-value=0.0055 Score=49.46 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHhhcCC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNT 30 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~ 30 (175)
++.|+|++|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999988753
No 447
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.61 E-value=0.023 Score=45.98 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=19.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHhh
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYT 27 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~ 27 (175)
+..-|.|+|+.++|||+|+|.++
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 45567799999999999999553
No 448
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.61 E-value=0.0056 Score=45.64 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=21.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcC
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
+...|+|.|..||||||+++.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999888753
No 449
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.59 E-value=0.0054 Score=47.45 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHhhc
Q 030525 9 CVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 9 i~v~G~~~~GKTsli~~l~~ 28 (175)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998876
No 450
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.58 E-value=0.0054 Score=51.32 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|+|||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998763
No 451
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.57 E-value=0.0069 Score=50.87 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.+.++|++|+|||||++.+.+-
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5789999999999999998863
No 452
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.57 E-value=0.0078 Score=46.49 Aligned_cols=22 Identities=32% Similarity=0.318 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
-|+|+|++|||||+|...+...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 4789999999999999999853
No 453
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.56 E-value=0.0079 Score=46.86 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHhhc
Q 030525 7 IKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~ 28 (175)
.-|+|+|++|||||+|...|..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999985
No 454
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.56 E-value=0.0075 Score=46.21 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
-++|.|++|+|||||++.+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 5889999999999999998864
No 455
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.53 E-value=0.0061 Score=51.06 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++++|++|+|||||++.+.+-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 7899999999999999888753
No 456
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.49 E-value=0.0051 Score=51.30 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHhhc
Q 030525 8 KCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~ 28 (175)
.++++|++|+|||||++.+.+
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 689999999999999987765
No 457
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.47 E-value=0.0091 Score=42.92 Aligned_cols=19 Identities=21% Similarity=0.412 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHhh
Q 030525 9 CVTVGDGAVGKTCMLISYT 27 (175)
Q Consensus 9 i~v~G~~~~GKTsli~~l~ 27 (175)
.+|+|++|+||||++..+.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 4788999999999998875
No 458
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.46 E-value=0.0041 Score=42.05 Aligned_cols=24 Identities=8% Similarity=0.041 Sum_probs=20.6
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcC
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
...|++.|++|+|||++.+.+...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCcEEEECCCCccHHHHHHHHHHh
Confidence 356999999999999999888764
No 459
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.46 E-value=0.0079 Score=48.85 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCCHHHHHHHhhc
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
.-+++++|++|+|||++++.+..
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHH
Confidence 44789999999999999988874
No 460
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.46 E-value=0.0086 Score=50.31 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.+.++|++|+|||||++.+.+-
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5789999999999999998864
No 461
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.45 E-value=0.011 Score=44.77 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=20.4
Q ss_pred eEEEEECCCCCCHHHHHHHhhcC
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
-.+++.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999999988863
No 462
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.44 E-value=0.0079 Score=46.51 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.+++.|++|+||||+++.+...
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999988864
No 463
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.44 E-value=0.0081 Score=46.27 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.+++.|++|+|||++++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999988753
No 464
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.42 E-value=0.0093 Score=49.36 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.+.|+|++|+|||||++.+.+-
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999864
No 465
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.42 E-value=0.0083 Score=49.66 Aligned_cols=22 Identities=18% Similarity=0.213 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.+.|+|++|+|||||++.+.+-
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999864
No 466
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.41 E-value=0.0091 Score=46.04 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=20.8
Q ss_pred eEEEEECCCCCCHHHHHHHhhcC
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
-.+++.|++|+|||+|++.+...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 47999999999999999999864
No 467
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.41 E-value=0.0068 Score=46.50 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
-++|.|++|+|||+|++.+...
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999998753
No 468
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.41 E-value=0.0093 Score=45.83 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=21.0
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcC
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.-.+++.|++|+|||++++.+...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 347999999999999999998763
No 469
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.41 E-value=0.011 Score=43.55 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=20.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
...++.++|++||||||+..++..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 457899999999999999988874
No 470
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.40 E-value=0.0072 Score=47.23 Aligned_cols=22 Identities=18% Similarity=0.114 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
-+.|+|++|+|||||+..+...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999864
No 471
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.40 E-value=0.0095 Score=45.69 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.5
Q ss_pred eeEEEEECCCCCCHHHHHHHhhc
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
.-.+++.|++|+|||+|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988875
No 472
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.39 E-value=0.0083 Score=42.53 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHhhcC
Q 030525 9 CVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 9 i~v~G~~~~GKTsli~~l~~~ 29 (175)
++|+|.++||||++..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999865
No 473
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.39 E-value=0.013 Score=45.95 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=20.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
...+|+++|++|+||||+...+..
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHH
Confidence 346799999999999999976663
No 474
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.38 E-value=0.0083 Score=45.83 Aligned_cols=22 Identities=27% Similarity=0.241 Sum_probs=19.2
Q ss_pred eeEEEEECCCCCCHHHHHHHhh
Q 030525 6 FIKCVTVGDGAVGKTCMLISYT 27 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~ 27 (175)
.-.++++|++|+||||++..+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3478999999999999998876
No 475
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.37 E-value=0.007 Score=50.58 Aligned_cols=21 Identities=14% Similarity=0.290 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHhhc
Q 030525 8 KCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~ 28 (175)
.+.++|++|+|||||++.+.+
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999988775
No 476
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.36 E-value=0.0099 Score=43.64 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=20.7
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcC
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
...|++.|..||||||+++.+...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 356899999999999999988753
No 477
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.36 E-value=0.022 Score=43.54 Aligned_cols=21 Identities=14% Similarity=0.159 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHhhcC
Q 030525 9 CVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 9 i~v~G~~~~GKTsli~~l~~~ 29 (175)
+++.|++|+|||++++.+...
T Consensus 51 ~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHHHH
Confidence 455666999999999999754
No 478
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.34 E-value=0.0092 Score=50.11 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHhhcC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.++|+|++|+|||||++.+.+-
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999864
No 479
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.34 E-value=0.008 Score=46.70 Aligned_cols=25 Identities=16% Similarity=0.085 Sum_probs=21.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcC
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
..-.+++.|++|+|||++++.+...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999988853
No 480
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.29 E-value=0.011 Score=43.90 Aligned_cols=25 Identities=12% Similarity=0.131 Sum_probs=21.8
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcCC
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSNT 30 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~~ 30 (175)
...+++.|++|+|||++++.+....
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhc
Confidence 3579999999999999999998654
No 481
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.28 E-value=0.0087 Score=46.50 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=20.4
Q ss_pred eEEEEECCCCCCHHHHHHHhhcC
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
-.+++.|++|+|||++++.+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998853
No 482
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.26 E-value=0.017 Score=44.38 Aligned_cols=22 Identities=23% Similarity=0.140 Sum_probs=19.3
Q ss_pred eeEEEEECCCCCCHHHHHHHhh
Q 030525 6 FIKCVTVGDGAVGKTCMLISYT 27 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~ 27 (175)
.--++++|++|+||||++..+.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHH
Confidence 3468899999999999998877
No 483
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.23 E-value=0.0045 Score=46.03 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHhhc
Q 030525 8 KCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~ 28 (175)
.+++.|++|+|||++++.+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 488999999999999999885
No 484
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.20 E-value=0.012 Score=45.27 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=20.8
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcC
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.-.+++.|++|+|||++++.+...
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999998754
No 485
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.18 E-value=0.011 Score=42.48 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=20.1
Q ss_pred eeEEEEECCCCCCHHHHHHHhhc
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
...|++.|++||||||+.+.+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988764
No 486
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.17 E-value=0.0092 Score=46.52 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=20.7
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcC
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.-.+++.|++|+|||++++.+...
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999988853
No 487
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.11 E-value=0.011 Score=47.57 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=19.7
Q ss_pred eEEEEECCCCCCHHHHHHHhhc
Q 030525 7 IKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~ 28 (175)
-.+++.|++|+|||+|++.+.+
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998875
No 488
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.10 E-value=0.012 Score=49.46 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHhhcC
Q 030525 9 CVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 9 i~v~G~~~~GKTsli~~l~~~ 29 (175)
+.++|++|+|||||++.+.+-
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl 401 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGA 401 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCcHHHHHHHHhcC
Confidence 799999999999999999864
No 489
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.10 E-value=0.013 Score=45.91 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=21.0
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcC
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
...+++.|++|+|||++++.+...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999998863
No 490
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.09 E-value=0.014 Score=47.03 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=21.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcC
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.+-.|++.||||+|||+|+..+.+.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHH
Confidence 3557999999999999999998863
No 491
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.08 E-value=0.014 Score=42.39 Aligned_cols=23 Identities=13% Similarity=-0.022 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCCHHHHHHHhhc
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
..-|++.|++||||||+++.+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 45689999999999999998864
No 492
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.06 E-value=0.01 Score=48.86 Aligned_cols=19 Identities=26% Similarity=0.483 Sum_probs=17.4
Q ss_pred EEEEECCCCCCHHHHHHHh
Q 030525 8 KCVTVGDGAVGKTCMLISY 26 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l 26 (175)
-++|+|++|+|||||++.+
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 4789999999999999995
No 493
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.04 E-value=0.014 Score=42.47 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHhh
Q 030525 8 KCVTVGDGAVGKTCMLISYT 27 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~ 27 (175)
-++|.|+||+|||+|+..++
T Consensus 32 l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999998765
No 494
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.04 E-value=0.013 Score=45.78 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=20.4
Q ss_pred eEEEEECCCCCCHHHHHHHhhcC
Q 030525 7 IKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 7 ~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
-.|++.|++|+|||+|++.+...
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 36999999999999999998864
No 495
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.02 E-value=0.015 Score=51.41 Aligned_cols=24 Identities=13% Similarity=0.300 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHhhcCCC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNTF 31 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~~ 31 (175)
.+.++|++|+|||||++.+.++..
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 579999999999999999997544
No 496
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.02 E-value=0.01 Score=43.65 Aligned_cols=24 Identities=25% Similarity=0.097 Sum_probs=17.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhc
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~ 28 (175)
+..-|++.|++||||||+++.+..
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999998874
No 497
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.00 E-value=0.014 Score=45.55 Aligned_cols=24 Identities=21% Similarity=0.099 Sum_probs=21.2
Q ss_pred eeEEEEECCCCCCHHHHHHHhhcC
Q 030525 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 6 ~~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
.-.+++.|++|+|||++++.+...
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999754
No 498
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.99 E-value=0.014 Score=41.16 Aligned_cols=23 Identities=13% Similarity=0.359 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHhhcCC
Q 030525 8 KCVTVGDGAVGKTCMLISYTSNT 30 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~~~~ 30 (175)
-+++.|++|+||||+...|....
T Consensus 18 gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHcC
Confidence 58999999999999999998643
No 499
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.98 E-value=0.011 Score=47.04 Aligned_cols=20 Identities=15% Similarity=0.134 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHhh
Q 030525 8 KCVTVGDGAVGKTCMLISYT 27 (175)
Q Consensus 8 ki~v~G~~~~GKTsli~~l~ 27 (175)
-+.|+|++|+|||||+..++
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 47899999999999999876
No 500
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.98 E-value=0.015 Score=45.39 Aligned_cols=25 Identities=16% Similarity=0.137 Sum_probs=21.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHhhcC
Q 030525 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (175)
Q Consensus 5 ~~~ki~v~G~~~~GKTsli~~l~~~ 29 (175)
..-.+++.|++|+|||++.+.+...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999998864
Done!