Query 030526
Match_columns 175
No_of_seqs 154 out of 261
Neff 4.6
Searched_HMMs 29240
Date Tue Mar 26 00:37:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030526.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030526hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1taf_A TFIID TBP associated fa 100.0 6.9E-30 2.4E-34 180.2 9.2 68 9-76 1-68 (68)
2 1ku5_A HPHA, archaeal histon; 99.6 2.2E-16 7.4E-21 110.1 6.7 65 7-73 6-70 (70)
3 3b0c_T CENP-T, centromere prot 99.6 1.5E-15 5.1E-20 115.3 6.7 90 7-98 7-107 (111)
4 3b0b_B CENP-S, centromere prot 99.5 3.5E-15 1.2E-19 113.1 4.8 59 15-73 25-86 (107)
5 3v9r_A MHF1, uncharacterized p 99.5 9.9E-15 3.4E-19 107.7 6.0 61 12-73 19-79 (90)
6 4dra_A Centromere protein S; D 99.5 1.5E-14 5.1E-19 110.8 4.5 60 14-73 32-94 (113)
7 3vh5_A CENP-S; histone fold, c 99.4 7.7E-13 2.6E-17 104.5 6.9 60 13-73 27-86 (140)
8 2hue_C Histone H4; mini beta s 99.3 1.8E-12 6.1E-17 93.5 5.9 67 6-74 9-75 (84)
9 1id3_B Histone H4; nucleosome 99.3 4.1E-12 1.4E-16 95.0 7.6 67 7-75 28-94 (102)
10 1tzy_D Histone H4-VI; histone- 99.3 7.1E-12 2.4E-16 93.5 7.8 65 8-74 30-94 (103)
11 2yfw_B Histone H4, H4; cell cy 99.3 6.1E-12 2.1E-16 93.9 7.3 65 8-74 30-94 (103)
12 1taf_B TFIID TBP associated fa 99.2 2.8E-11 9.7E-16 85.5 8.3 64 7-72 6-69 (70)
13 1f1e_A Histone fold protein; a 99.0 7E-10 2.4E-14 88.6 7.9 63 13-75 86-148 (154)
14 1b67_A Protein (histone HMFA); 99.0 1.7E-09 5.8E-14 74.3 6.9 60 14-73 7-66 (68)
15 2ly8_A Budding yeast chaperone 98.9 2E-09 6.7E-14 83.2 7.3 56 20-75 58-113 (121)
16 2l5a_A Histone H3-like centrom 98.9 1.8E-09 6.1E-14 91.4 7.0 58 17-74 169-226 (235)
17 1f1e_A Histone fold protein; a 98.8 1E-08 3.6E-13 81.8 7.8 62 13-74 8-70 (154)
18 2hue_B Histone H3; mini beta s 98.8 2.5E-08 8.5E-13 71.5 8.4 65 12-76 10-75 (77)
19 3nqj_A Histone H3-like centrom 98.7 6.7E-08 2.3E-12 70.1 7.8 65 12-76 10-77 (82)
20 1n1j_A NF-YB; histone-like PAI 98.7 1E-07 3.5E-12 69.2 8.2 75 14-89 13-89 (93)
21 2yfv_A Histone H3-like centrom 98.5 3.1E-07 1.1E-11 68.7 7.7 62 12-73 34-99 (100)
22 3r45_A Histone H3-like centrom 98.5 3.2E-07 1.1E-11 73.5 8.1 65 12-76 84-151 (156)
23 3b0c_W CENP-W, centromere prot 98.5 5.2E-07 1.8E-11 63.5 8.2 68 6-75 3-71 (76)
24 1tzy_C Histone H3; histone-fol 98.5 4.3E-07 1.5E-11 71.3 8.0 65 12-76 69-134 (136)
25 3nqu_A Histone H3-like centrom 98.5 3.5E-07 1.2E-11 72.1 7.1 65 12-76 68-135 (140)
26 2nqb_C Histone H2A; nucleosome 98.4 1E-06 3.5E-11 67.8 7.4 62 12-73 26-88 (123)
27 2f8n_G Core histone macro-H2A. 98.3 1E-06 3.6E-11 67.5 6.8 62 12-73 25-87 (120)
28 1tzy_A Histone H2A-IV; histone 98.3 1.5E-06 5E-11 67.5 7.4 62 12-73 28-90 (129)
29 2f8n_K Histone H2A type 1; nuc 98.3 2E-06 7E-11 68.3 7.3 62 12-73 47-109 (149)
30 1id3_C Histone H2A.1; nucleoso 98.3 1.8E-06 6.2E-11 67.1 6.8 62 12-73 28-90 (131)
31 1f66_C Histone H2A.Z; nucleoso 98.2 3.6E-06 1.2E-10 65.2 7.1 62 12-73 30-93 (128)
32 2byk_B Chrac-14; nucleosome sl 98.2 4.6E-06 1.6E-10 64.4 7.1 85 1-89 1-90 (128)
33 1jfi_B DR1 protein, transcript 98.1 7.9E-06 2.7E-10 66.6 7.9 79 7-88 15-94 (179)
34 1n1j_B NF-YC; histone-like PAI 98.1 8.6E-06 2.9E-10 59.7 7.1 68 13-80 23-91 (97)
35 2jss_A Chimera of histone H2B. 98.1 1.2E-05 4.1E-10 65.6 7.9 62 12-73 108-171 (192)
36 1jfi_A Transcription regulator 97.9 1.4E-05 4.8E-10 58.8 4.5 68 12-79 14-82 (98)
37 2nqb_D Histone H2B; nucleosome 97.6 0.00017 5.8E-09 55.8 7.3 64 12-75 36-100 (123)
38 1tzy_B Histone H2B; histone-fo 97.5 0.00025 8.4E-09 55.1 7.3 63 13-75 40-103 (126)
39 4g92_C HAPE; transcription fac 97.5 0.0003 1E-08 53.3 7.2 67 13-79 45-112 (119)
40 1h3o_B Transcription initiatio 97.4 0.00091 3.1E-08 47.6 8.1 62 15-76 11-73 (76)
41 2jss_A Chimera of histone H2B. 97.2 0.0012 4.1E-08 53.6 8.0 64 12-75 6-70 (192)
42 2l5a_A Histone H3-like centrom 97.0 0.0013 4.4E-08 55.7 6.3 65 12-76 18-86 (235)
43 2byk_A Chrac-16; nucleosome sl 96.2 0.0063 2.2E-07 47.5 5.3 69 13-81 23-93 (140)
44 3uk6_A RUVB-like 2; hexameric 95.1 0.12 4.2E-06 42.7 9.1 62 13-75 266-331 (368)
45 3bos_A Putative DNA replicatio 93.4 0.32 1.1E-05 36.9 7.7 59 12-72 180-241 (242)
46 2r44_A Uncharacterized protein 92.8 1.1 3.9E-05 36.6 10.7 68 26-93 226-324 (331)
47 1g8p_A Magnesium-chelatase 38 92.7 0.65 2.2E-05 37.8 9.1 55 26-80 267-328 (350)
48 2c9o_A RUVB-like 1; hexameric 92.3 0.44 1.5E-05 41.8 8.0 65 11-76 367-439 (456)
49 4dra_E Centromere protein X; D 91.8 1.1 3.9E-05 32.1 8.3 60 7-69 12-75 (84)
50 2keb_A DNA polymerase subunit 90.6 1.4 4.8E-05 32.8 8.0 62 6-68 22-86 (101)
51 2ly8_A Budding yeast chaperone 89.8 0.84 2.9E-05 34.8 6.4 62 12-73 8-79 (121)
52 1in4_A RUVB, holliday junction 89.4 2.9 9.9E-05 34.8 10.1 80 14-95 188-272 (334)
53 3k1j_A LON protease, ATP-depen 89.4 1.6 5.6E-05 39.7 9.1 50 24-73 312-374 (604)
54 2v1u_A Cell division control p 89.2 1.8 6.1E-05 35.2 8.4 69 25-93 221-301 (387)
55 2chg_A Replication factor C sm 88.6 1 3.5E-05 33.1 6.1 57 13-72 168-224 (226)
56 1jr3_D DNA polymerase III, del 86.0 0.99 3.4E-05 37.4 5.1 62 12-74 148-209 (343)
57 2qby_A CDC6 homolog 1, cell di 85.6 5.5 0.00019 32.1 9.3 50 25-74 217-272 (386)
58 1njg_A DNA polymerase III subu 85.0 1.9 6.6E-05 31.8 5.8 54 13-71 192-248 (250)
59 1sxj_D Activator 1 41 kDa subu 82.7 1.1 3.6E-05 36.5 3.8 59 13-72 199-261 (353)
60 2qby_B CDC6 homolog 3, cell di 82.7 4.7 0.00016 33.0 7.8 49 25-75 217-271 (384)
61 3pfi_A Holliday junction ATP-d 82.4 8 0.00027 31.4 9.1 80 13-94 191-275 (338)
62 1fnn_A CDC6P, cell division co 82.3 7.8 0.00027 31.6 8.9 68 26-93 214-299 (389)
63 3ksy_A SOS-1, SON of sevenless 82.0 3.2 0.00011 40.8 7.5 62 12-73 107-168 (1049)
64 1h3o_A Transcription initiatio 80.5 2.4 8E-05 29.9 4.4 43 15-57 12-54 (75)
65 1w5s_A Origin recognition comp 78.9 14 0.00049 30.3 9.5 68 26-93 236-319 (412)
66 3fes_A ATP-dependent CLP endop 77.8 4 0.00014 30.1 5.3 58 14-73 47-116 (145)
67 1hqc_A RUVB; extended AAA-ATPa 77.5 5 0.00017 32.2 6.2 82 13-96 175-261 (324)
68 3b0b_C CENP-X, centromere prot 76.7 9.6 0.00033 26.9 6.7 62 6-69 7-71 (81)
69 4e2i_2 DNA polymerase alpha su 74.4 5.7 0.0002 28.1 5.0 54 11-65 4-60 (78)
70 3fh2_A Probable ATP-dependent 74.0 14 0.00048 27.1 7.4 58 14-73 46-116 (146)
71 1k6k_A ATP-dependent CLP prote 73.1 15 0.00052 26.3 7.3 57 15-73 40-114 (143)
72 1bh9_B TAFII28; histone fold, 72.3 22 0.00077 25.3 7.9 59 15-73 22-81 (89)
73 2qz4_A Paraplegin; AAA+, SPG7, 72.1 2.6 8.7E-05 32.7 3.0 62 13-74 184-249 (262)
74 3kw6_A 26S protease regulatory 72.1 4.1 0.00014 27.1 3.7 60 13-75 10-74 (78)
75 3h4m_A Proteasome-activating n 71.4 7.5 0.00026 30.7 5.7 60 14-75 196-259 (285)
76 2y1q_A CLPC N-domain, negative 67.3 22 0.00076 25.6 7.2 58 14-73 45-114 (150)
77 1jr3_A DNA polymerase III subu 65.0 8.3 0.00028 31.4 4.8 54 13-71 185-241 (373)
78 3pvs_A Replication-associated 64.2 7.7 0.00026 34.3 4.8 61 13-74 172-244 (447)
79 2zc2_A DNAD-like replication p 63.8 18 0.00061 24.1 5.6 40 7-49 18-64 (78)
80 3nbx_X ATPase RAVA; AAA+ ATPas 59.7 11 0.00039 34.0 5.1 45 26-70 225-282 (500)
81 2z4s_A Chromosomal replication 59.3 13 0.00043 32.5 5.2 60 14-75 271-333 (440)
82 2i5u_A DNAD domain protein; st 58.5 33 0.0011 23.3 6.3 47 15-61 4-59 (83)
83 1r6b_X CLPA protein; AAA+, N-t 58.4 43 0.0015 30.8 8.8 61 14-75 357-434 (758)
84 3zri_A CLPB protein, CLPV; cha 58.3 32 0.0011 26.5 6.9 57 14-73 64-134 (171)
85 1ixz_A ATP-dependent metallopr 58.1 12 0.0004 29.2 4.4 60 11-71 187-253 (254)
86 2chq_A Replication factor C sm 57.5 15 0.0005 29.0 4.9 56 13-71 168-223 (319)
87 1wwi_A Hypothetical protein TT 56.1 10 0.00035 29.8 3.7 54 14-67 7-60 (148)
88 1lv7_A FTSH; alpha/beta domain 54.7 17 0.00057 28.4 4.7 36 39-74 217-252 (257)
89 3f9v_A Minichromosome maintena 53.9 12 0.00041 34.3 4.3 34 41-74 554-587 (595)
90 1iy2_A ATP-dependent metallopr 53.4 19 0.00066 28.6 5.0 60 11-71 211-277 (278)
91 1sxj_B Activator 1 37 kDa subu 49.5 39 0.0013 26.5 6.2 57 13-72 173-229 (323)
92 3vlf_B 26S protease regulatory 47.4 36 0.0012 23.2 5.0 59 13-74 8-71 (88)
93 1iqp_A RFCS; clamp loader, ext 45.6 27 0.00091 27.6 4.7 53 13-68 176-228 (327)
94 1ofh_A ATP-dependent HSL prote 45.0 39 0.0013 26.4 5.6 53 21-73 228-298 (310)
95 3syl_A Protein CBBX; photosynt 44.2 70 0.0024 25.2 7.0 55 13-68 211-280 (309)
96 3f8t_A Predicted ATPase involv 43.5 20 0.00068 33.1 4.0 48 26-73 414-482 (506)
97 3vfd_A Spastin; ATPase, microt 42.7 44 0.0015 28.0 5.8 60 13-73 289-364 (389)
98 1l8q_A Chromosomal replication 42.7 16 0.00055 29.6 3.0 94 13-108 173-284 (324)
99 1r4v_A Hypothetical protein AQ 42.7 17 0.00059 29.2 3.1 59 9-67 26-84 (171)
100 4b4t_H 26S protease regulatory 40.8 39 0.0013 30.7 5.5 61 14-74 388-450 (467)
101 3u61_B DNA polymerase accessor 39.0 10 0.00034 30.7 1.2 56 14-73 180-236 (324)
102 4b4t_I 26S protease regulatory 38.5 46 0.0016 30.0 5.5 58 13-73 360-422 (437)
103 2dzn_B 26S protease regulatory 37.6 36 0.0012 22.7 3.7 37 38-74 32-68 (82)
104 4b4t_J 26S protease regulatory 36.9 51 0.0017 29.2 5.5 59 13-74 326-389 (405)
105 3aji_B S6C, proteasome (prosom 36.8 31 0.0011 22.8 3.3 58 13-73 8-70 (83)
106 1r6b_X CLPA protein; AAA+, N-t 35.8 1.1E+02 0.0038 28.0 7.8 57 15-73 40-114 (758)
107 3l39_A Putative PHOU-like phos 35.2 1.1E+02 0.0037 24.2 6.8 79 7-95 21-103 (227)
108 4h62_V Mediator of RNA polymer 34.6 23 0.00079 20.6 1.9 19 22-40 4-22 (31)
109 4b4t_K 26S protease regulatory 34.0 91 0.0031 27.6 6.7 59 14-75 352-415 (428)
110 1khy_A CLPB protein; alpha hel 32.6 55 0.0019 23.3 4.3 57 14-72 45-116 (148)
111 2krk_A 26S protease regulatory 32.3 31 0.001 23.6 2.7 65 7-74 8-81 (86)
112 4b4t_L 26S protease subunit RP 31.7 61 0.0021 28.8 5.2 58 14-74 360-422 (437)
113 1sxj_A Activator 1 95 kDa subu 31.6 36 0.0012 30.1 3.6 54 14-73 217-273 (516)
114 3d8b_A Fidgetin-like protein 1 31.4 1.1E+02 0.0039 25.3 6.6 60 13-73 258-333 (357)
115 3b9p_A CG5977-PA, isoform A; A 31.3 47 0.0016 26.2 4.0 59 14-73 197-271 (297)
116 1sxj_C Activator 1 40 kDa subu 31.0 43 0.0015 27.4 3.8 58 13-71 176-236 (340)
117 3a1y_A 50S ribosomal protein P 30.4 56 0.0019 21.3 3.6 30 9-39 16-45 (58)
118 2lbf_A 60S acidic ribosomal pr 30.3 93 0.0032 20.9 4.8 29 37-73 6-34 (69)
119 4b4t_M 26S protease regulatory 28.9 93 0.0032 27.6 5.9 61 13-73 359-421 (434)
120 3cuq_A Vacuolar-sorting protei 26.2 1.7E+02 0.006 24.1 6.7 59 15-73 44-126 (234)
121 1u5t_A Appears to BE functiona 25.8 1.6E+02 0.0056 24.2 6.4 67 6-73 52-140 (233)
122 2olt_A Hypothetical protein; s 25.4 51 0.0017 25.7 3.2 33 63-95 61-93 (227)
123 2lbf_B 60S acidic ribosomal pr 21.5 76 0.0026 21.6 3.0 30 9-39 18-47 (70)
124 3cuq_B Vacuolar protein-sortin 21.5 2.7E+02 0.0093 22.3 6.9 14 12-25 46-59 (218)
125 3hqi_A Speckle-type POZ protei 21.4 2.9E+02 0.0099 22.0 7.1 66 25-96 219-288 (312)
126 3rq9_A TSI2, type VI secretion 21.2 42 0.0014 23.8 1.6 25 64-89 48-72 (85)
127 1qvr_A CLPB protein; coiled co 20.9 2.9E+02 0.0099 25.9 7.9 71 14-90 45-130 (854)
128 2r62_A Cell division protease 20.3 31 0.0011 26.8 1.0 34 40-73 219-252 (268)
No 1
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=99.96 E-value=6.9e-30 Score=180.20 Aligned_cols=68 Identities=50% Similarity=0.919 Sum_probs=66.4
Q ss_pred ChhHHHHHHHHHhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhc
Q 030526 9 PRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVN 76 (175)
Q Consensus 9 PrDa~~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~ 76 (175)
|||+++|++||++|||++|||+|++||+||+|||+.+||+||..||+||||+||+++||||||++|++
T Consensus 1 Prda~~i~~iLk~~G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~~~ 68 (68)
T 1taf_A 1 PKDAQVIMSILKELNVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVTLD 68 (68)
T ss_dssp CHHHHHHHHHHHHTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTC-
T ss_pred CchhHHHHHHHHHCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhccC
Confidence 89999999999999999999999999999999999999999999999999999999999999999874
No 2
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.65 E-value=2.2e-16 Score=110.09 Aligned_cols=65 Identities=28% Similarity=0.538 Sum_probs=61.2
Q ss_pred CCChhHHHHHHHHHhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030526 7 DLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 73 (175)
Q Consensus 7 ~~PrDa~~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
.+|+. .|.+|+|++|+.+|+++++.+|.|++++|+.+|++||..||+||||+||+.+||++|+++
T Consensus 6 ~lp~a--~v~Rl~r~~g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~~ 70 (70)
T 1ku5_A 6 ELPIA--PVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIKS 70 (70)
T ss_dssp CSCHH--HHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHTC
T ss_pred cCChH--HHHHHHHHcCcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHC
Confidence 45665 799999999999999999999999999999999999999999999999999999999863
No 3
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=99.59 E-value=1.5e-15 Score=115.30 Aligned_cols=90 Identities=21% Similarity=0.341 Sum_probs=73.2
Q ss_pred CCChhHHHHHHHHHhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhccccCCC----
Q 030526 7 DLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVNSSFSQP---- 82 (175)
Q Consensus 7 ~~PrDa~~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~~~f~~p---- 82 (175)
.+|+- .|.+|++..|+.+++++++.+|.+++++|+..|+.||..||+||||+||+++||++|++..-...|..+
T Consensus 7 ~lP~a--~I~Ri~r~~g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~~~~~~l~~l 84 (111)
T 3b0c_T 7 EIASS--LIKQIFSHYVKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTDKMPLHVL 84 (111)
T ss_dssp ---CH--HHHHHHHHHHCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSSBTTBCHHHH
T ss_pred CCCHH--HHHHHHHHCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCccccccHHHH
Confidence 34443 789999999999999999999999999999999999999999999999999999999998776788888
Q ss_pred ----CcHH---HHHHHHHhhcCC
Q 030526 83 ----PARE---VLLELAKNRNKI 98 (175)
Q Consensus 83 ----ppre---~LlelA~e~N~~ 98 (175)
+|+| .|+..|...|++
T Consensus 85 ~~~~lp~E~~~~l~~~a~~~n~~ 107 (111)
T 3b0c_T 85 VERHLPLEYRKLLIPIAVSGNKV 107 (111)
T ss_dssp HHHHSCHHHHHHHCCC-------
T ss_pred HHHhCcHHHHHHhccccccCCcc
Confidence 8888 455666666663
No 4
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=99.54 E-value=3.5e-15 Score=113.14 Aligned_cols=59 Identities=20% Similarity=0.363 Sum_probs=53.6
Q ss_pred HHHHHHhCCC---cccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030526 15 VKSLLKSMGV---EDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 73 (175)
Q Consensus 15 I~~ILks~Gv---~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
|.+|+++.|. .+|+++|+.+|.||+|+|+.+|+.||..||+||||+||+.+||+||++.
T Consensus 25 V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rr 86 (107)
T 3b0b_B 25 TGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARR 86 (107)
T ss_dssp HHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHh
Confidence 5566666655 5899999999999999999999999999999999999999999999865
No 5
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=99.53 E-value=9.9e-15 Score=107.66 Aligned_cols=61 Identities=28% Similarity=0.524 Sum_probs=56.4
Q ss_pred HHHHHHHHHhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030526 12 AKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 73 (175)
Q Consensus 12 a~~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
.+++...++++|+ .|+|+++.+|.|++|+|+.+|++|+..||+||||+||+.+||+||++.
T Consensus 19 ~ki~~e~~~~~g~-~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rr 79 (90)
T 3v9r_A 19 EERLQQVLSSEDI-KYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRK 79 (90)
T ss_dssp HHHHHHHSCSSCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHhcCc-eeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 4677788888898 499999999999999999999999999999999999999999999864
No 6
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=99.49 E-value=1.5e-14 Score=110.76 Aligned_cols=60 Identities=25% Similarity=0.460 Sum_probs=55.6
Q ss_pred HHHHHHHhCCCcc---cChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030526 14 IVKSLLKSMGVED---YEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 73 (175)
Q Consensus 14 ~I~~ILks~Gv~~---yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
.|.+|+++.|.++ |+++++.+|.|++|+|+.+|++|+..||+||||+||+.+||+||++.
T Consensus 32 ~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr 94 (113)
T 4dra_A 32 TVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARR 94 (113)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHh
Confidence 4778888887766 99999999999999999999999999999999999999999999864
No 7
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=99.37 E-value=7.7e-13 Score=104.49 Aligned_cols=60 Identities=22% Similarity=0.433 Sum_probs=54.2
Q ss_pred HHHHHHHHhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030526 13 KIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 73 (175)
Q Consensus 13 ~~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
+++.......|+ .|+++++.+|.|++|+|+.+|+.|+..||+||||+||+.+||+||++.
T Consensus 27 kIvee~~~~~~~-~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rr 86 (140)
T 3vh5_A 27 ALAQDVAEDKGV-LFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARR 86 (140)
T ss_dssp HHHHHHHHHHTC-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred HHHHHHHHhcCC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 556666666676 499999999999999999999999999999999999999999999965
No 8
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.32 E-value=1.8e-12 Score=93.54 Aligned_cols=67 Identities=21% Similarity=0.375 Sum_probs=62.7
Q ss_pred CCCChhHHHHHHHHHhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHh
Q 030526 6 EDLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSK 74 (175)
Q Consensus 6 ~~~PrDa~~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r 74 (175)
..+|.. .|.+|+++.|+.++++++...|.+.++.|..+|++||..|++||||+||+.+||.+|++..
T Consensus 9 ~~ip~~--~I~Riar~~Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 9 QGITKP--AIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp CSSCHH--HHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred CCCCHH--HHHHHHHHcCchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 356766 4899999999999999999999999999999999999999999999999999999999864
No 9
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.31 E-value=4.1e-12 Score=95.03 Aligned_cols=67 Identities=19% Similarity=0.353 Sum_probs=62.6
Q ss_pred CCChhHHHHHHHHHhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhh
Q 030526 7 DLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKV 75 (175)
Q Consensus 7 ~~PrDa~~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~ 75 (175)
.+|.+ .|.+|+++.|+.++++++...|.+.++.|+.+|+.||..|++||+|+||+++||.+|++...
T Consensus 28 ~ip~~--~I~Rlar~~Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g 94 (102)
T 1id3_B 28 GITKP--AIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 94 (102)
T ss_dssp GSCHH--HHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred CCCHH--HHHHHHHHcCchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcC
Confidence 46665 59999999999999999999999999999999999999999999999999999999998753
No 10
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.29 E-value=7.1e-12 Score=93.47 Aligned_cols=65 Identities=22% Similarity=0.378 Sum_probs=61.5
Q ss_pred CChhHHHHHHHHHhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHh
Q 030526 8 LPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSK 74 (175)
Q Consensus 8 ~PrDa~~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r 74 (175)
+|.. .|.+|+++.|+.+++.++...|.+.++.|+.+|++||..||+||+|+||+.+||.+|++..
T Consensus 30 ip~~--~I~Rlar~~G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 30 ITKP--AIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp SCHH--HHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred CCHH--HHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHc
Confidence 5554 6999999999999999999999999999999999999999999999999999999999875
No 11
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.29 E-value=6.1e-12 Score=93.93 Aligned_cols=65 Identities=22% Similarity=0.391 Sum_probs=61.5
Q ss_pred CChhHHHHHHHHHhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHh
Q 030526 8 LPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSK 74 (175)
Q Consensus 8 ~PrDa~~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r 74 (175)
+|.. .|.+|+++.|+.+++.++...|.+.++.|+.+|++||..||+||+|+||+.+||.+|++..
T Consensus 30 ip~~--~I~Rlar~~G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~ 94 (103)
T 2yfw_B 30 ITKP--AIRRLARRGGVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94 (103)
T ss_dssp CCHH--HHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred CCHH--HHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 5554 6999999999999999999999999999999999999999999999999999999999874
No 12
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=99.24 E-value=2.8e-11 Score=85.47 Aligned_cols=64 Identities=16% Similarity=0.311 Sum_probs=60.2
Q ss_pred CCChhHHHHHHHHHhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 030526 7 DLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQ 72 (175)
Q Consensus 7 ~~PrDa~~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~ 72 (175)
.+|. ..|.+|.++.|++++++++...|.+-++.++.+|+++|..|++|+||++++.+||.+|++
T Consensus 6 ~lp~--~~v~~iaes~Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 6 SISA--ESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp CCCH--HHHHHHHHHTTCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred cCCH--HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 4555 479999999999999999999999999999999999999999999999999999999975
No 13
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.01 E-value=7e-10 Score=88.62 Aligned_cols=63 Identities=22% Similarity=0.398 Sum_probs=60.5
Q ss_pred HHHHHHHHhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhh
Q 030526 13 KIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKV 75 (175)
Q Consensus 13 ~~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~ 75 (175)
-.|.+|+|..|+.+++.++...|.+.+..|+..|+++|..||+|+||+||+.+||.+|++..+
T Consensus 86 a~V~Ri~k~~g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~~ 148 (154)
T 1f1e_A 86 ATVRRILKRAGIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYSM 148 (154)
T ss_dssp HHHHHHHHHTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHS
T ss_pred cHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhcC
Confidence 469999999999999999999999999999999999999999999999999999999998754
No 14
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=98.95 E-value=1.7e-09 Score=74.30 Aligned_cols=60 Identities=20% Similarity=0.332 Sum_probs=57.0
Q ss_pred HHHHHHHhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030526 14 IVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 73 (175)
Q Consensus 14 ~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
.|.+|+|+.|..+++.+++..|-+.++.|+..|.+||..+|.|++|+||+.+||.+|++.
T Consensus 7 ~v~Ri~k~~~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~ 66 (68)
T 1b67_A 7 PIGRIIKNAGAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM 66 (68)
T ss_dssp HHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGG
T ss_pred HHHHHHhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 578899999999999999999999999999999999999999999999999999999853
No 15
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=98.93 E-value=2e-09 Score=83.19 Aligned_cols=56 Identities=20% Similarity=0.309 Sum_probs=52.8
Q ss_pred HhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhh
Q 030526 20 KSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKV 75 (175)
Q Consensus 20 ks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~ 75 (175)
.-.||.++|..+...+.+.+..|..+|+.||..|++|||||||+++||.+|++..-
T Consensus 58 ~~gGvkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G 113 (121)
T 2ly8_A 58 VPRGSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 113 (121)
T ss_dssp CCCCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTT
T ss_pred CccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCC
Confidence 44699999999999999999999999999999999999999999999999998743
No 16
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.91 E-value=1.8e-09 Score=91.42 Aligned_cols=58 Identities=21% Similarity=0.296 Sum_probs=56.4
Q ss_pred HHHHhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHh
Q 030526 17 SLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSK 74 (175)
Q Consensus 17 ~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r 74 (175)
+|++..||.++|..+...+.+.+..|..+|+.||..|++||||+||+++||.+|++..
T Consensus 169 RlaRrgGVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~ 226 (235)
T 2l5a_A 169 EDGDKGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 226 (235)
T ss_dssp TTSCCTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH
T ss_pred HHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhc
Confidence 8899999999999999999999999999999999999999999999999999999874
No 17
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.81 E-value=1e-08 Score=81.82 Aligned_cols=62 Identities=11% Similarity=0.129 Sum_probs=59.3
Q ss_pred HHHHHHHHhC-CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHh
Q 030526 13 KIVKSLLKSM-GVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSK 74 (175)
Q Consensus 13 ~~I~~ILks~-Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r 74 (175)
-.|.+|+|.. |+.+++.++...|.+.+..|+..|.++|..||+|+||+||+++||..|....
T Consensus 8 a~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~l 70 (154)
T 1f1e_A 8 AAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVL 70 (154)
T ss_dssp HHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHH
T ss_pred cHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhc
Confidence 3689999999 9999999999999999999999999999999999999999999999999763
No 18
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=98.79 E-value=2.5e-08 Score=71.53 Aligned_cols=65 Identities=18% Similarity=0.305 Sum_probs=58.6
Q ss_pred HHHHHHHHHhC-CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhc
Q 030526 12 AKIVKSLLKSM-GVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVN 76 (175)
Q Consensus 12 a~~I~~ILks~-Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~ 76 (175)
.|+|+.|..+. |..+|+..++..|-|.++.|...+.+||...|.||||.||...||+||...|..
T Consensus 10 ~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg~ 75 (77)
T 2hue_B 10 QRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 75 (77)
T ss_dssp HHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhCc
Confidence 36777776655 678999999999999999999999999999999999999999999999988754
No 19
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=98.68 E-value=6.7e-08 Score=70.06 Aligned_cols=65 Identities=18% Similarity=0.276 Sum_probs=57.3
Q ss_pred HHHHHHHHHhCC---CcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhc
Q 030526 12 AKIVKSLLKSMG---VEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVN 76 (175)
Q Consensus 12 a~~I~~ILks~G---v~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~ 76 (175)
.|+|..|-.+.. ..+|+..++..|-|.++.|..++.+||...|.||+|.||...||+||...|..
T Consensus 10 ~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg~ 77 (82)
T 3nqj_A 10 SRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGL 77 (82)
T ss_dssp HHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHccc
Confidence 467777765543 56999999999999999999999999999999999999999999999988764
No 20
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=98.65 E-value=1e-07 Score=69.24 Aligned_cols=75 Identities=13% Similarity=0.123 Sum_probs=64.6
Q ss_pred HHHHHHHhCCC--cccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhccccCCCCcHHHHH
Q 030526 14 IVKSLLKSMGV--EDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVNSSFSQPPAREVLL 89 (175)
Q Consensus 14 ~I~~ILks~Gv--~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~~~f~~pppre~Ll 89 (175)
.|.+|+|+.|. .+++.+++..|.+.+..|+..+..+|..+|.|++|+||..+||..|++ +++|.-.-+|-+.+|-
T Consensus 13 ~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~-~l~F~~~i~~~~~~l~ 89 (93)
T 1n1j_A 13 NVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS-TLGFDSYVEPLKLYLQ 89 (93)
T ss_dssp HHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH-HTTCGGGHHHHHHHHH
T ss_pred HHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH-HcCcHhhHHHHHHHHH
Confidence 57899999965 689999999999999999999999999999999999999999999997 5776544444444443
No 21
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=98.51 E-value=3.1e-07 Score=68.69 Aligned_cols=62 Identities=24% Similarity=0.304 Sum_probs=55.4
Q ss_pred HHHHHHHHHhCC----CcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030526 12 AKIVKSLLKSMG----VEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 73 (175)
Q Consensus 12 a~~I~~ILks~G----v~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
.++|..|..+.. ..+|+..++..|-|.++.|...+.+||...|.||||.||...||+||...
T Consensus 34 ~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ri 99 (100)
T 2yfv_A 34 ARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARRI 99 (100)
T ss_dssp HHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHC
T ss_pred HHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHh
Confidence 467777876653 56999999999999999999999999999999999999999999999764
No 22
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=98.50 E-value=3.2e-07 Score=73.52 Aligned_cols=65 Identities=18% Similarity=0.276 Sum_probs=58.5
Q ss_pred HHHHHHHHHhCC---CcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhc
Q 030526 12 AKIVKSLLKSMG---VEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVN 76 (175)
Q Consensus 12 a~~I~~ILks~G---v~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~ 76 (175)
.++|..|..+.. ..+|+..++..|-|.++.|..++++||..+|.||+|.||...||+||...|..
T Consensus 84 ~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrIrg~ 151 (156)
T 3r45_A 84 SRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGL 151 (156)
T ss_dssp HHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHccc
Confidence 477888877664 46999999999999999999999999999999999999999999999988753
No 23
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=98.50 E-value=5.2e-07 Score=63.50 Aligned_cols=68 Identities=9% Similarity=0.084 Sum_probs=59.9
Q ss_pred CCCChhHHHHHHHHH-hCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhh
Q 030526 6 EDLPRDAKIVKSLLK-SMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKV 75 (175)
Q Consensus 6 ~~~PrDa~~I~~ILk-s~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~ 75 (175)
..+|+ -.|.+|+| ..+-..++.++...+.+++..|+..|..+|...|.|+||+||+.+||..|++..+
T Consensus 3 ~~LP~--A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ll 71 (76)
T 3b0c_W 3 RTVPR--GTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVIL 71 (76)
T ss_dssp -CCCH--HHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHH
T ss_pred Ccccc--cHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 34555 36889999 4476789999999999999999999999999999999999999999999998754
No 24
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=98.48 E-value=4.3e-07 Score=71.26 Aligned_cols=65 Identities=18% Similarity=0.307 Sum_probs=58.1
Q ss_pred HHHHHHHHHhC-CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhc
Q 030526 12 AKIVKSLLKSM-GVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVN 76 (175)
Q Consensus 12 a~~I~~ILks~-Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~ 76 (175)
.++|..|..+. |..+|+..++..|-|.++.|...+.+||..+|.||+|.||...||+||...|..
T Consensus 69 ~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rirg~ 134 (136)
T 1tzy_C 69 QRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134 (136)
T ss_dssp HHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHhCc
Confidence 36677776554 668999999999999999999999999999999999999999999999988753
No 25
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=98.46 E-value=3.5e-07 Score=72.14 Aligned_cols=65 Identities=18% Similarity=0.276 Sum_probs=56.8
Q ss_pred HHHHHHHHHhCC---CcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhc
Q 030526 12 AKIVKSLLKSMG---VEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVN 76 (175)
Q Consensus 12 a~~I~~ILks~G---v~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~ 76 (175)
.++|..|-.+.. ..+|+..++..|-|.++.|..++++||...|.||+|.||...||+||...|..
T Consensus 68 ~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrirg~ 135 (140)
T 3nqu_A 68 SRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGL 135 (140)
T ss_dssp HHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhccc
Confidence 466777765542 46999999999999999999999999999999999999999999999988653
No 26
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=98.36 E-value=1e-06 Score=67.82 Aligned_cols=62 Identities=16% Similarity=0.081 Sum_probs=59.1
Q ss_pred HHHHHHHHHhC-CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030526 12 AKIVKSLLKSM-GVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 73 (175)
Q Consensus 12 a~~I~~ILks~-Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
+--|+++|++. ++.+++..+...|...++.++.+||+.|..+|.|+++++|+.+||++||+.
T Consensus 26 V~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 88 (123)
T 2nqb_C 26 VGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 88 (123)
T ss_dssp HHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred HHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhc
Confidence 45689999997 999999999999999999999999999999999999999999999999986
No 27
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=98.33 E-value=1e-06 Score=67.48 Aligned_cols=62 Identities=11% Similarity=-0.015 Sum_probs=58.8
Q ss_pred HHHHHHHHHhCC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030526 12 AKIVKSLLKSMG-VEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 73 (175)
Q Consensus 12 a~~I~~ILks~G-v~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
+--|+++|++.+ +.+++..+...|...++.++.+||+.|-.+|.|+++++|+.+||++||..
T Consensus 25 V~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~n 87 (120)
T 2f8n_G 25 VGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVAN 87 (120)
T ss_dssp HHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred hHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 346899999998 78999999999999999999999999999999999999999999999986
No 28
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=98.31 E-value=1.5e-06 Score=67.48 Aligned_cols=62 Identities=16% Similarity=0.082 Sum_probs=58.9
Q ss_pred HHHHHHHHHhC-CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030526 12 AKIVKSLLKSM-GVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 73 (175)
Q Consensus 12 a~~I~~ILks~-Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
+--|+++|++. ++.+++..+...|...++.++.+||+.|..+|.|+++++|+.+||++||..
T Consensus 28 V~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 90 (129)
T 1tzy_A 28 VGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (129)
T ss_dssp HHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred HHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 34689999996 999999999999999999999999999999999999999999999999986
No 29
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=98.26 E-value=2e-06 Score=68.32 Aligned_cols=62 Identities=16% Similarity=0.076 Sum_probs=59.0
Q ss_pred HHHHHHHHHhC-CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030526 12 AKIVKSLLKSM-GVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 73 (175)
Q Consensus 12 a~~I~~ILks~-Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
+--|+++|++. ++++++..+...|...++.++.+||+.|..+|.|+++++|+.+||++||+.
T Consensus 47 VgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~n 109 (149)
T 2f8n_K 47 VGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 109 (149)
T ss_dssp HHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhc
Confidence 34689999997 999999999999999999999999999999999999999999999999986
No 30
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.26 E-value=1.8e-06 Score=67.09 Aligned_cols=62 Identities=15% Similarity=0.073 Sum_probs=59.2
Q ss_pred HHHHHHHHHhC-CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030526 12 AKIVKSLLKSM-GVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 73 (175)
Q Consensus 12 a~~I~~ILks~-Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
+--|+++|++. ++.+++..+...|...++.++.+||+.|-.+|.|+++++|+.+||++||+.
T Consensus 28 V~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~n 90 (131)
T 1id3_C 28 VGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (131)
T ss_dssp HHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred HHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 55799999996 999999999999999999999999999999999999999999999999986
No 31
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=98.19 E-value=3.6e-06 Score=65.16 Aligned_cols=62 Identities=16% Similarity=0.052 Sum_probs=58.2
Q ss_pred HHHHHHHHHhCC-C-cccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030526 12 AKIVKSLLKSMG-V-EDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 73 (175)
Q Consensus 12 a~~I~~ILks~G-v-~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
+--|+++|++.+ + ++++..+...|...++.++.+||+.|-.+|.|+++++|+..||++||..
T Consensus 30 V~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~n 93 (128)
T 1f66_C 30 VGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 93 (128)
T ss_dssp HHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred hHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 346899999998 4 5999999999999999999999999999999999999999999999986
No 32
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=98.15 E-value=4.6e-06 Score=64.36 Aligned_cols=85 Identities=16% Similarity=0.207 Sum_probs=64.0
Q ss_pred CCCCCC--CCChhHHHHHHHHHhCC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhc
Q 030526 1 MAEGDE--DLPRDAKIVKSLLKSMG--VEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVN 76 (175)
Q Consensus 1 m~~~~~--~~PrDa~~I~~ILks~G--v~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~ 76 (175)
|++... .+|. -.|.+|+|+.+ +..++.+++..|.+.+..|+..|...|..+|.|.+|+||+.+||..|+.. ++
T Consensus 1 m~e~~~d~~LP~--A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~-l~ 77 (128)
T 2byk_B 1 MVERIEDLNLPN--AVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTE-LD 77 (128)
T ss_dssp ----------CC--SHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH-TT
T ss_pred CCCccccccCCH--HHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH-cC
Confidence 444333 4454 36899999654 67899999999999999999999999999999999999999999999987 55
Q ss_pred c-ccCCCCcHHHHH
Q 030526 77 S-SFSQPPAREVLL 89 (175)
Q Consensus 77 ~-~f~~pppre~Ll 89 (175)
+ .|.. |=+.+|-
T Consensus 78 f~~fl~-~lk~~l~ 90 (128)
T 2byk_B 78 FESFVP-SLTQDLE 90 (128)
T ss_dssp CTTTHH-HHHHHHH
T ss_pred cHHHHH-HHHHHHH
Confidence 4 4443 3344444
No 33
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=98.11 E-value=7.9e-06 Score=66.65 Aligned_cols=79 Identities=15% Similarity=0.189 Sum_probs=67.0
Q ss_pred CCChhHHHHHHHHHhCCC-cccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhccccCCCCcH
Q 030526 7 DLPRDAKIVKSLLKSMGV-EDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVNSSFSQPPAR 85 (175)
Q Consensus 7 ~~PrDa~~I~~ILks~Gv-~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~~~f~~pppr 85 (175)
.+|+ -.|.+|+|+.|- ..++.++...|.+.+..|+..|...|...|.|+||+||+.+||..|+. +++|...-+|=+
T Consensus 15 ~LP~--A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~-~LgF~~fv~~lk 91 (179)
T 1jfi_B 15 TIPR--AAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALE-SLGFGSYISEVK 91 (179)
T ss_dssp CCCH--HHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH-HHTTGGGHHHHH
T ss_pred hcCH--HHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH-hcChHHHHHHHH
Confidence 5676 478999999973 689999999999999999999999999999999999999999999998 477654444444
Q ss_pred HHH
Q 030526 86 EVL 88 (175)
Q Consensus 86 e~L 88 (175)
.+|
T Consensus 92 ~~L 94 (179)
T 1jfi_B 92 EVL 94 (179)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 34
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=98.09 E-value=8.6e-06 Score=59.72 Aligned_cols=68 Identities=13% Similarity=0.152 Sum_probs=61.1
Q ss_pred HHHHHHHHhCCC-cccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhccccC
Q 030526 13 KIVKSLLKSMGV-EDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVNSSFS 80 (175)
Q Consensus 13 ~~I~~ILks~Gv-~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~~~f~ 80 (175)
--|++|+|+.+- ..++.+++-.+-..++.++.++++.|...|.+.+|+||+.+||.+||+.--.+.|-
T Consensus 23 arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL 91 (97)
T 1n1j_B 23 ARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFL 91 (97)
T ss_dssp HHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGG
T ss_pred HHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHHH
Confidence 468999999954 68999999999999999999999999999999999999999999999875555553
No 35
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=98.05 E-value=1.2e-05 Score=65.56 Aligned_cols=62 Identities=15% Similarity=0.086 Sum_probs=58.1
Q ss_pred HHHHHHHHHhC-CC-cccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030526 12 AKIVKSLLKSM-GV-EDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 73 (175)
Q Consensus 12 a~~I~~ILks~-Gv-~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
+--|+++|++. ++ .+++..+...|...++.++.+||+.|-.+|.|+|+++|+.+||++||..
T Consensus 108 v~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~n 171 (192)
T 2jss_A 108 VGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRG 171 (192)
T ss_dssp HHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHT
T ss_pred HHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Confidence 45789999997 66 6999999999999999999999999999999999999999999999986
No 36
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=97.86 E-value=1.4e-05 Score=58.82 Aligned_cols=68 Identities=9% Similarity=0.092 Sum_probs=54.1
Q ss_pred HHHHHHHHHhCCC-cccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhcccc
Q 030526 12 AKIVKSLLKSMGV-EDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVNSSF 79 (175)
Q Consensus 12 a~~I~~ILks~Gv-~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~~~f 79 (175)
+--|++|||+-+- .+++..++-.|-..++-++.++++.|-..|.+.||++|+..||.+||+.--.+.|
T Consensus 14 vaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~F 82 (98)
T 1jfi_A 14 PARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAA 82 (98)
T ss_dssp HHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC-------
T ss_pred hHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhH
Confidence 4568999999854 7899999999999999999999999999999999999999999999987444444
No 37
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=97.61 E-value=0.00017 Score=55.78 Aligned_cols=64 Identities=13% Similarity=0.178 Sum_probs=58.9
Q ss_pred HHHHHHHHHhCCCc-ccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhh
Q 030526 12 AKIVKSLLKSMGVE-DYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKV 75 (175)
Q Consensus 12 a~~I~~ILks~Gv~-~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~ 75 (175)
..-|.++||..+-. ..+.++..-|..|++.....|+.+|..+|.|++|+||+..||+.|+..-+
T Consensus 36 ~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlL 100 (123)
T 2nqb_D 36 AIYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLL 100 (123)
T ss_dssp HHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHhC
Confidence 35799999988765 79999999999999999999999999999999999999999999998754
No 38
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=97.53 E-value=0.00025 Score=55.06 Aligned_cols=63 Identities=13% Similarity=0.147 Sum_probs=58.5
Q ss_pred HHHHHHHHhCCCc-ccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhh
Q 030526 13 KIVKSLLKSMGVE-DYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKV 75 (175)
Q Consensus 13 ~~I~~ILks~Gv~-~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~ 75 (175)
..|.++||..+-. ..+.++..-|..|++.....|+.+|..+|.|++|+||+..||+.|+..-+
T Consensus 40 ~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlL 103 (126)
T 1tzy_B 40 IYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLL 103 (126)
T ss_dssp HHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhC
Confidence 4699999998765 79999999999999999999999999999999999999999999998754
No 39
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=97.48 E-value=0.0003 Score=53.35 Aligned_cols=67 Identities=15% Similarity=0.170 Sum_probs=60.1
Q ss_pred HHHHHHHHhC-CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhcccc
Q 030526 13 KIVKSLLKSM-GVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVNSSF 79 (175)
Q Consensus 13 ~~I~~ILks~-Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~~~f 79 (175)
--|++|+|+- .+..++.+++-.+...++-++.+|+..|...|...+|+||+.+||..||+.--.+.|
T Consensus 45 aRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~dF 112 (119)
T 4g92_C 45 ARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDF 112 (119)
T ss_dssp HHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGG
T ss_pred HHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchhhH
Confidence 4689999965 677999999999999999999999999999999999999999999999987444555
No 40
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=97.38 E-value=0.00091 Score=47.62 Aligned_cols=62 Identities=21% Similarity=0.364 Sum_probs=53.7
Q ss_pred HHHHHHhC-CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhc
Q 030526 15 VKSLLKSM-GVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVN 76 (175)
Q Consensus 15 I~~ILks~-Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~ 76 (175)
+..++++. |-...+|+|-..|+++|..++.+|+..|..+|+|-|-++|+.-||++.++..-|
T Consensus 11 L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler~wn 73 (76)
T 1h3o_B 11 LQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWN 73 (76)
T ss_dssp HHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHTC
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHhhcC
Confidence 44555554 446899999999999999999999999999999999999999999999876443
No 41
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=97.19 E-value=0.0012 Score=53.63 Aligned_cols=64 Identities=14% Similarity=0.159 Sum_probs=58.2
Q ss_pred HHHHHHHHHhCCC-cccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhh
Q 030526 12 AKIVKSLLKSMGV-EDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKV 75 (175)
Q Consensus 12 a~~I~~ILks~Gv-~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~ 75 (175)
...|.++||..+- ...+.++...|-.|+.+....|..+|..++.|++|+||+..||+.|++.-+
T Consensus 6 ~~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~l 70 (192)
T 2jss_A 6 SSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLIL 70 (192)
T ss_dssp HHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhc
Confidence 3568999998865 579999999999999999999999999999999999999999999998643
No 42
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.0013 Score=55.70 Aligned_cols=65 Identities=23% Similarity=0.282 Sum_probs=58.8
Q ss_pred HHHHHHHHHhCC----CcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhc
Q 030526 12 AKIVKSLLKSMG----VEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVN 76 (175)
Q Consensus 12 a~~I~~ILks~G----v~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~ 76 (175)
.|+|..|..+.. --+|+..++..|-|-++.|...+.+|+...|-||+|-||-..||+||...|..
T Consensus 18 qRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg~ 86 (235)
T 2l5a_A 18 ARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQ 86 (235)
T ss_dssp HHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSCS
T ss_pred HHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhhc
Confidence 478889988764 35899999999999999999999999999999999999999999999877654
No 43
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=96.23 E-value=0.0063 Score=47.49 Aligned_cols=69 Identities=13% Similarity=0.112 Sum_probs=55.5
Q ss_pred HHHHHHHHhC-CCcccChHHHHHHHHHHHHHHHHHHHHHHHHH-hHhCCCCCCHHHHHHHHHHhhccccCC
Q 030526 13 KIVKSLLKSM-GVEDYEPRVIHQFLELWYRYVVDVLTDAQVYS-EHAGKNTIDCDDVKLAVQSKVNSSFSQ 81 (175)
Q Consensus 13 ~~I~~ILks~-Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA-~HAgR~tI~~eDVrLAI~~r~~~~f~~ 81 (175)
--|++|+|+- .+..++..++-.+-..++-++..++..|...| ...+|+||+..||..||...-.+.|-.
T Consensus 23 aRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~dFL~ 93 (140)
T 2byk_A 23 SRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFLL 93 (140)
T ss_dssp ------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGGGT
T ss_pred HHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchhhhHh
Confidence 3588899887 44579999999999999999999999999999 888999999999999998755566643
No 44
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.06 E-value=0.12 Score=42.74 Aligned_cols=62 Identities=15% Similarity=0.245 Sum_probs=52.9
Q ss_pred HHHHHHHHhCCCcccChHHHHHHHHHHH----HHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhh
Q 030526 13 KIVKSLLKSMGVEDYEPRVIHQFLELWY----RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKV 75 (175)
Q Consensus 13 ~~I~~ILks~Gv~~yep~Vv~qLlEfay----rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~ 75 (175)
.++...++..|+ .++++++..|.+++. |++..++..|..+|...|+..|+.+||+.|+..-+
T Consensus 266 ~il~~~~~~~~~-~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~~ 331 (368)
T 3uk6_A 266 QILRIRCEEEDV-EMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFL 331 (368)
T ss_dssp HHHHHHHHHTTC-CBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHSB
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc
Confidence 455556667776 499999999999884 89999999999999999999999999999998633
No 45
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.42 E-value=0.32 Score=36.93 Aligned_cols=59 Identities=17% Similarity=0.085 Sum_probs=46.9
Q ss_pred HHHHHHHHHhCCCcccChHHHHHHHHHHH---HHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 030526 12 AKIVKSLLKSMGVEDYEPRVIHQFLELWY---RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQ 72 (175)
Q Consensus 12 a~~I~~ILks~Gv~~yep~Vv~qLlEfay---rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~ 72 (175)
.+++..+++..|+ .++++++..|.+.+. |.+..++..|..+|...|+ .|+.+||+-+++
T Consensus 180 ~~~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~~-~It~~~v~~~l~ 241 (242)
T 3bos_A 180 LAALQRRAAMRGL-QLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQR-KLTIPFVKEMLR 241 (242)
T ss_dssp HHHHHHHHHHTTC-CCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTC-CCCHHHHHHHHT
T ss_pred HHHHHHHHHHcCC-CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCC-CCcHHHHHHHhh
Confidence 3566777777887 599999999998876 6777888888888866664 699999998874
No 46
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=92.79 E-value=1.1 Score=36.63 Aligned_cols=68 Identities=12% Similarity=0.152 Sum_probs=51.5
Q ss_pred ccChHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhccccC--
Q 030526 26 DYEPRVIHQFLELW-----------------------YRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVNSSFS-- 80 (175)
Q Consensus 26 ~yep~Vv~qLlEfa-----------------------yrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~~~f~-- 80 (175)
.+++.++..+.+++ -|-...++.-|..+|...|+..|+.+||+.|+..-+.+...
T Consensus 226 ~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~r~~~~ 305 (331)
T 2r44_A 226 TISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNHRIILN 305 (331)
T ss_dssp BCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTTTSEEC
T ss_pred CCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHhhccCC
Confidence 47888998888876 46667788999999999999999999999999876655443
Q ss_pred ------CCCcHHHHHHHHH
Q 030526 81 ------QPPAREVLLELAK 93 (175)
Q Consensus 81 ------~pppre~LlelA~ 93 (175)
+-.+.+.+-++..
T Consensus 306 ~~~~~~~~~~~~i~~~i~~ 324 (331)
T 2r44_A 306 YEAEAEGISTRQIIETILR 324 (331)
T ss_dssp HHHHHTTCCHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHh
Confidence 2234555555544
No 47
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=92.74 E-value=0.65 Score=37.83 Aligned_cols=55 Identities=13% Similarity=0.180 Sum_probs=48.7
Q ss_pred ccChHHHHHHHHHHH-------HHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhccccC
Q 030526 26 DYEPRVIHQFLELWY-------RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVNSSFS 80 (175)
Q Consensus 26 ~yep~Vv~qLlEfay-------rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~~~f~ 80 (175)
.++++++..|.+++. |....++.-|..+|...|+..|+.+||+.|+..-+.+.+.
T Consensus 267 ~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l~~r~~ 328 (350)
T 1g8p_A 267 EAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMALSHRLR 328 (350)
T ss_dssp BCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHGGGCC
T ss_pred CCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHhhccc
Confidence 699999999999976 6788899999999999999999999999999987776654
No 48
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=92.31 E-value=0.44 Score=41.80 Aligned_cols=65 Identities=22% Similarity=0.375 Sum_probs=52.6
Q ss_pred hHHHHHHHHH----hCCCcccChHHHHHHHHHH-H---HHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhc
Q 030526 11 DAKIVKSLLK----SMGVEDYEPRVIHQFLELW-Y---RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVN 76 (175)
Q Consensus 11 Da~~I~~ILk----s~Gv~~yep~Vv~qLlEfa-y---rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~ 76 (175)
+..-+..||+ ..|+ .+++.++..+..++ . |++..+|..|..+|...|+..|+.+||+.|+..-++
T Consensus 367 ~~~e~~~iL~~~~~~~~~-~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~~d 439 (456)
T 2c9o_A 367 TPQEMKQIIKIRAQTEGI-NISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELFYD 439 (456)
T ss_dssp CHHHHHHHHHHHHHHHTC-CBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHhcC
Confidence 4444445554 4565 49999999999998 4 899999999999999999999999999999877443
No 49
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=91.83 E-value=1.1 Score=32.12 Aligned_cols=60 Identities=15% Similarity=0.273 Sum_probs=51.4
Q ss_pred CCChhHHHHHHHHHhCCC----cccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHH
Q 030526 7 DLPRDAKIVKSLLKSMGV----EDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKL 69 (175)
Q Consensus 7 ~~PrDa~~I~~ILks~Gv----~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrL 69 (175)
.+|. .+|.+||+ +.. ++.+.++...+-+++.-++.+....|...|+--|...|+.+|+.-
T Consensus 12 ~i~~--~li~ril~-~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEk 75 (84)
T 4dra_E 12 GFRK--ELVSRLLH-LHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEK 75 (84)
T ss_dssp CCCH--HHHHHHHH-TTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHH
T ss_pred CCCH--HHHHHHHH-HHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHH
Confidence 4554 58999999 433 589999999999999999999999999988877888999999864
No 50
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=90.61 E-value=1.4 Score=32.80 Aligned_cols=62 Identities=15% Similarity=0.297 Sum_probs=50.0
Q ss_pred CCCChhHHHHHHHHHhCCCcccChHHHHHHHHHHHHH---HHHHHHHHHHHHhHhCCCCCCHHHHH
Q 030526 6 EDLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRY---VVDVLTDAQVYSEHAGKNTIDCDDVK 68 (175)
Q Consensus 6 ~~~PrDa~~I~~ILks~Gv~~yep~Vv~qLlEfayrY---t~~VL~DA~~yA~HAgR~tI~~eDVr 68 (175)
+.+.=.+.-|..-|..+||+ +++.|+..++|++.+| +.++..+=..|+-+.+...++.+-+.
T Consensus 22 ~~~~Vsae~L~eEfdefGi~-~~d~VldKc~ELC~~y~lda~e~VeeWmAFsts~~g~~pT~enL~ 86 (101)
T 2keb_A 22 GSMSASAQQLAEELQIFGLD-CEEALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSEILN 86 (101)
T ss_dssp --CCCCHHHHHHHHHHHTCB-CCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCSBCCHHHHH
T ss_pred chhhccHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCCHHHHH
Confidence 35566788999999999995 9999999999999999 56777777888888887777766543
No 51
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=89.83 E-value=0.84 Score=34.84 Aligned_cols=62 Identities=19% Similarity=0.290 Sum_probs=48.4
Q ss_pred HHHHHHHHHhCC----CcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCC---CCCH---HHHHHHHHH
Q 030526 12 AKIVKSLLKSMG----VEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKN---TIDC---DDVKLAVQS 73 (175)
Q Consensus 12 a~~I~~ILks~G----v~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~---tI~~---eDVrLAI~~ 73 (175)
.|+|..|..+.. --+|+..++..|-|-++.|...+++|+...|-||-|. .|+. +.++-+++.
T Consensus 8 ~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS~~iy~e~r~vl~~ 79 (121)
T 2ly8_A 8 ARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISGLIYEEVRAVLKS 79 (121)
T ss_dssp HHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchhHHHHHHHHHHHHH
Confidence 577888877653 3589999999999999999999999999999999554 4553 445544444
No 52
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=89.44 E-value=2.9 Score=34.84 Aligned_cols=80 Identities=16% Similarity=0.116 Sum_probs=57.2
Q ss_pred HHHHHHHhCCCcccChHHHHHHHHHHH---HHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhccccCCCCc--HHHH
Q 030526 14 IVKSLLKSMGVEDYEPRVIHQFLELWY---RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVNSSFSQPPA--REVL 88 (175)
Q Consensus 14 ~I~~ILks~Gv~~yep~Vv~qLlEfay---rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~~~f~~ppp--re~L 88 (175)
++.++.+..|++ ++++++..+.+.+. |.+..+|..+..||...|+..|+.++|+.|+.. +...-.+-+. +..|
T Consensus 188 iL~~~~~~~~~~-~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~-~~~~~~~l~~~~~~~l 265 (334)
T 1in4_A 188 IIKRAASLMDVE-IEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEV-LNIDDEGLDEFDRKIL 265 (334)
T ss_dssp HHHHHHHHTTCC-BCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH-HTCCTTCCCHHHHHHH
T ss_pred HHHHHHHHcCCC-cCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH-hCCCcCCCCHHHHHHH
Confidence 444444566874 99999888887654 677888999999999889999999999999986 4333233333 3456
Q ss_pred HHHHHhh
Q 030526 89 LELAKNR 95 (175)
Q Consensus 89 lelA~e~ 95 (175)
..++...
T Consensus 266 ~~~~~~~ 272 (334)
T 1in4_A 266 KTIIEIY 272 (334)
T ss_dssp HHHHHHS
T ss_pred HHHHHHh
Confidence 6566643
No 53
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=89.37 E-value=1.6 Score=39.66 Aligned_cols=50 Identities=16% Similarity=0.231 Sum_probs=44.8
Q ss_pred CcccChHHHHHHHHHHH-------------HHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030526 24 VEDYEPRVIHQFLELWY-------------RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 73 (175)
Q Consensus 24 v~~yep~Vv~qLlEfay-------------rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
...++++++..|++++. |....++..|..+|...|+..|+.+||+.|++.
T Consensus 312 ~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 312 IPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp SCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 45799999999999885 567789999999999999999999999999965
No 54
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=89.21 E-value=1.8 Score=35.24 Aligned_cols=69 Identities=22% Similarity=0.204 Sum_probs=52.6
Q ss_pred cccChHHHHHHHHHHH------HHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhcc----ccCCCC--cHHHHHHHH
Q 030526 25 EDYEPRVIHQFLELWY------RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVNS----SFSQPP--AREVLLELA 92 (175)
Q Consensus 25 ~~yep~Vv~qLlEfay------rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~~----~f~~pp--pre~LlelA 92 (175)
..++++++..+.+++. |++..++..|..+|...|+..|+.+||+-|+...... .+.+-+ .+.+|+.++
T Consensus 221 ~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~~~~~~~~~l~~~~~~~l~a~~ 300 (387)
T 2v1u_A 221 GVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIERDRVSEVVRTLPLHAKLVLLSIM 300 (387)
T ss_dssp TTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhhchHHHHHHcCCHHHHHHHHHHH
Confidence 4689999999999998 8888999999999988899999999999998764222 122333 345556666
Q ss_pred H
Q 030526 93 K 93 (175)
Q Consensus 93 ~ 93 (175)
.
T Consensus 301 ~ 301 (387)
T 2v1u_A 301 M 301 (387)
T ss_dssp H
T ss_pred H
Confidence 4
No 55
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=88.64 E-value=1 Score=33.10 Aligned_cols=57 Identities=11% Similarity=0.083 Sum_probs=38.5
Q ss_pred HHHHHHHHhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 030526 13 KIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQ 72 (175)
Q Consensus 13 ~~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~ 72 (175)
.++..+++..|+. ++++++..|.+.+......++......+..+ +.|+.+||+.|+.
T Consensus 168 ~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 168 KRLLEICEKEGVK-ITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp HHHHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred HHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 4555666667874 8999999988877644444443333333333 6899999999885
No 56
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=85.98 E-value=0.99 Score=37.37 Aligned_cols=62 Identities=11% Similarity=0.072 Sum_probs=46.3
Q ss_pred HHHHHHHHHhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHh
Q 030526 12 AKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSK 74 (175)
Q Consensus 12 a~~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r 74 (175)
.++|..++++.|++ ++++++..|.+.+.-=...++.+...++-.++.+.|+.+||+-.+...
T Consensus 148 ~~~l~~~~~~~g~~-i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~~ 209 (343)
T 1jr3_D 148 PRWVAARAKQLNLE-LDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDA 209 (343)
T ss_dssp HHHHHHHHHHTTCE-ECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC-CCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhh
Confidence 46889999999985 999999999998775555555555555554566689999998766543
No 57
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=85.64 E-value=5.5 Score=32.15 Aligned_cols=50 Identities=18% Similarity=0.118 Sum_probs=42.6
Q ss_pred cccChHHHHHHHHHHH------HHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHh
Q 030526 25 EDYEPRVIHQFLELWY------RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSK 74 (175)
Q Consensus 25 ~~yep~Vv~qLlEfay------rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r 74 (175)
..+++.++..+.+++. |++.+++..|..+|...|+..|+.+||+.|+...
T Consensus 217 ~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 217 GVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEI 272 (386)
T ss_dssp SCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 4689999999999887 5677888888888888889999999999988763
No 58
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=85.04 E-value=1.9 Score=31.82 Aligned_cols=54 Identities=15% Similarity=0.234 Sum_probs=37.7
Q ss_pred HHHHHHHHhCCCcccChHHHHHHHHHHH---HHHHHHHHHHHHHHhHhCCCCCCHHHHHHHH
Q 030526 13 KIVKSLLKSMGVEDYEPRVIHQFLELWY---RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAV 71 (175)
Q Consensus 13 ~~I~~ILks~Gv~~yep~Vv~qLlEfay---rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI 71 (175)
.++..+++..|+ .++++++..|.+.+. |++..++..|..+ +++.|+.+||+-|+
T Consensus 192 ~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~----~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 192 HQLEHILNEEHI-AHEPRALQLLARAAEGSLRDALSLTDQAIAS----GDGQVSTQAVSAML 248 (250)
T ss_dssp HHHHHHHHHTTC-CBCHHHHHHHHHHHTTCHHHHHHHHHHHHTT----TTSSBCHHHHHHHS
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc----cCceecHHHHHHHh
Confidence 456667777786 589999888888876 3444555555333 34589999999875
No 59
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.71 E-value=1.1 Score=36.52 Aligned_cols=59 Identities=14% Similarity=0.172 Sum_probs=40.2
Q ss_pred HHHHHHHHhCCCcccChHHHHHHHHHHHH---HHHHHHHHHHHHHhHhCCC-CCCHHHHHHHHH
Q 030526 13 KIVKSLLKSMGVEDYEPRVIHQFLELWYR---YVVDVLTDAQVYSEHAGKN-TIDCDDVKLAVQ 72 (175)
Q Consensus 13 ~~I~~ILks~Gv~~yep~Vv~qLlEfayr---Yt~~VL~DA~~yA~HAgR~-tI~~eDVrLAI~ 72 (175)
.++..+++..|+ .++++++..|.+++.. .+..+++.+..++...++. .|+.+||+-++.
T Consensus 199 ~~l~~~~~~~~~-~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 199 DRLRFISEQENV-KCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHHHHHTTTC-CCCHHHHHHHHHHTSSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHHHHHHHHhCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 445556666787 4999999999998764 4445555555554433333 899999998765
No 60
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=82.70 E-value=4.7 Score=32.99 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=40.5
Q ss_pred cccChHHHHHHHHHHH------HHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhh
Q 030526 25 EDYEPRVIHQFLELWY------RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKV 75 (175)
Q Consensus 25 ~~yep~Vv~qLlEfay------rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~ 75 (175)
..++++++..+.+++. |++.+++..|..+|. |...|+.+||+.|+....
T Consensus 217 ~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 217 GTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp TSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 3689999999998886 567788888888887 778999999999987643
No 61
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=82.43 E-value=8 Score=31.40 Aligned_cols=80 Identities=11% Similarity=0.064 Sum_probs=58.2
Q ss_pred HHHHHHHHhCCCcccChHHHHHHHHHHH---HHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhccccCCCC--cHHH
Q 030526 13 KIVKSLLKSMGVEDYEPRVIHQFLELWY---RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVNSSFSQPP--AREV 87 (175)
Q Consensus 13 ~~I~~ILks~Gv~~yep~Vv~qLlEfay---rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~~~f~~pp--pre~ 87 (175)
.++...++..|+ .+++.++..|...+. |.+..++..|..+|...+...|+.++++-++.. .......-. .+.+
T Consensus 191 ~il~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~-~~~~~~~l~~~e~~~ 268 (338)
T 3pfi_A 191 LILQKAALKLNK-TCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNS-LGVNELGFDAMDLRY 268 (338)
T ss_dssp HHHHHHHHHTTC-EECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH-HTCCTTCCCHHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHH-hCCcccCCCHHHHHH
Confidence 355666677786 599999999998653 677888888888999889999999999999876 332222222 2457
Q ss_pred HHHHHHh
Q 030526 88 LLELAKN 94 (175)
Q Consensus 88 LlelA~e 94 (175)
+..++..
T Consensus 269 l~~l~~~ 275 (338)
T 3pfi_A 269 LELLTAA 275 (338)
T ss_dssp HHHHHHS
T ss_pred HHHHHHh
Confidence 7777764
No 62
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=82.32 E-value=7.8 Score=31.57 Aligned_cols=68 Identities=15% Similarity=0.280 Sum_probs=53.1
Q ss_pred ccChHHHHHHHHHH------------HHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhcccc----C--CCCcHHH
Q 030526 26 DYEPRVIHQFLELW------------YRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVNSSF----S--QPPAREV 87 (175)
Q Consensus 26 ~yep~Vv~qLlEfa------------yrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~~~f----~--~pppre~ 87 (175)
.++++++..+.+.+ -|++.+++..|..+|...|+..|+.+||..|+..-....+ . .+..+.+
T Consensus 214 ~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~l~~l~~~~~~~ 293 (389)
T 1fnn_A 214 SYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLFGISEEVLIGLPLHEKLF 293 (389)
T ss_dssp SSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHSCCCCHHHHHHSCHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhhhhHHHHHHcCCHHHHHH
Confidence 68999999999999 4788999999999998889999999999999876433221 1 1345667
Q ss_pred HHHHHH
Q 030526 88 LLELAK 93 (175)
Q Consensus 88 LlelA~ 93 (175)
|..++.
T Consensus 294 L~~l~~ 299 (389)
T 1fnn_A 294 LLAIVR 299 (389)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777775
No 63
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=81.98 E-value=3.2 Score=40.78 Aligned_cols=62 Identities=18% Similarity=0.177 Sum_probs=55.4
Q ss_pred HHHHHHHHHhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030526 12 AKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 73 (175)
Q Consensus 12 a~~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
+--|+++|+..-+.+++..+.-.|.-.++-.+.+||+-|-.+|....+..|+..+|.+|+..
T Consensus 107 v~~~~~~l~~~~~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~ 168 (1049)
T 3ksy_A 107 VEKIHPLLKEVLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCA 168 (1049)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHH
T ss_pred HHHHHHHhhcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccC
Confidence 44588888555457999999999999999999999999999999999999999999999976
No 64
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=80.47 E-value=2.4 Score=29.90 Aligned_cols=43 Identities=9% Similarity=0.185 Sum_probs=35.8
Q ss_pred HHHHHHhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 030526 15 VKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHA 57 (175)
Q Consensus 15 I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HA 57 (175)
|-.|.+..|+++.+++|+..+---++.....+++.-...|.|-
T Consensus 12 i~~I~~k~gl~~~~~dv~~~iS~a~qeRLr~llekl~~~a~~R 54 (75)
T 1h3o_A 12 ILEIGKKHGITELHPDVVSYVSHATQQRLQNLVEKISETAQQK 54 (75)
T ss_dssp HHHHHHTTTCCEECTTHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHhcCCCcCChhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 5578899999999999999999999999999999999999885
No 65
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=78.85 E-value=14 Score=30.31 Aligned_cols=68 Identities=21% Similarity=0.258 Sum_probs=50.1
Q ss_pred ccChHHHHHHHHHHH---------HHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhh-----ccccCCCCc--HHHHH
Q 030526 26 DYEPRVIHQFLELWY---------RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKV-----NSSFSQPPA--REVLL 89 (175)
Q Consensus 26 ~yep~Vv~qLlEfay---------rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~-----~~~f~~ppp--re~Ll 89 (175)
.++++++..+.+.+. +|+..++..|...|...++..|+.++|+.|+.... ...+..-|+ +.+|.
T Consensus 236 ~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~~l~~l~~~~~~~l~ 315 (412)
T 1w5s_A 236 VWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEAASIQTHELEALSIHELIILR 315 (412)
T ss_dssp SCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------CCSSSSSCHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccchHHHHHHcCCHHHHHHHH
Confidence 588999999999888 68888998888888888889999999998886532 223333333 45566
Q ss_pred HHHH
Q 030526 90 ELAK 93 (175)
Q Consensus 90 elA~ 93 (175)
.+|.
T Consensus 316 aia~ 319 (412)
T 1w5s_A 316 LIAE 319 (412)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5664
No 66
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=77.84 E-value=4 Score=30.14 Aligned_cols=58 Identities=16% Similarity=0.245 Sum_probs=44.2
Q ss_pred HHHHHHHhCCCcccChHHHHHHHHHHH------------HHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030526 14 IVKSLLKSMGVEDYEPRVIHQFLELWY------------RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 73 (175)
Q Consensus 14 ~I~~ILks~Gv~~yep~Vv~qLlEfay------------rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
++.+||+++|+. -+.+...+.++.. .-+..+|..|...|...|...|+.+.+=+|+-.
T Consensus 47 ~~~~iL~~~gvd--~~~l~~~l~~~l~~~~~~~~~~~~s~~~~~vl~~A~~~A~~~~~~~v~~eHlLlAll~ 116 (145)
T 3fes_A 47 IAAKVLSKVGFT--EAYLEGKIVDMEGKGEEISEDIVLSPRSKQILELSGMFANKLKTNYIGTEHILLAIIQ 116 (145)
T ss_dssp HHHHHHHHHTCC--HHHHHHHHHHHHCCCSCCCSCCEECHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred hHHHHHHHcCCC--HHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHh
Confidence 567899999985 1334444444432 346789999999999999999999999999854
No 67
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=77.47 E-value=5 Score=32.17 Aligned_cols=82 Identities=15% Similarity=0.088 Sum_probs=56.1
Q ss_pred HHHHHHHHhCCCcccChHHHHHHHHHH---HHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhccccCCCC--cHHH
Q 030526 13 KIVKSLLKSMGVEDYEPRVIHQFLELW---YRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVNSSFSQPP--AREV 87 (175)
Q Consensus 13 ~~I~~ILks~Gv~~yep~Vv~qLlEfa---yrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~~~f~~pp--pre~ 87 (175)
.++...++..|+ .++++++..|.+++ -|.+..++..+..+|...+...|+.+|++.++.. .......-. .++.
T Consensus 175 ~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~-~~~~~~~l~~~e~~~ 252 (324)
T 1hqc_A 175 QGVMRDARLLGV-RITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAA-LGLDELGLEKRDREI 252 (324)
T ss_dssp HHHHHHHHTTTC-CCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHH-HTCCTTCCCHHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-hcccccCCCHHHHHH
Confidence 455666667786 59999999999885 3666777777777777778889999999988865 222222222 3456
Q ss_pred HHHHHHhhc
Q 030526 88 LLELAKNRN 96 (175)
Q Consensus 88 LlelA~e~N 96 (175)
+..++...+
T Consensus 253 i~~~~~~~~ 261 (324)
T 1hqc_A 253 LEVLILRFG 261 (324)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHHhc
Confidence 666666544
No 68
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=76.74 E-value=9.6 Score=26.90 Aligned_cols=62 Identities=16% Similarity=0.227 Sum_probs=50.8
Q ss_pred CCCChhHHHHHHHHHhC---CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHH
Q 030526 6 EDLPRDAKIVKSLLKSM---GVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKL 69 (175)
Q Consensus 6 ~~~PrDa~~I~~ILks~---Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrL 69 (175)
..+|.+ +|.+||+.. --++.+++++..+-+++.-++.+....|..-|+--|...|+.+|+.-
T Consensus 7 ~~~~~~--lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEk 71 (81)
T 3b0b_C 7 GGFRKE--TVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEK 71 (81)
T ss_dssp CCCCHH--HHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred CCCCHH--HHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHH
Confidence 345554 678888764 13689999999999999999999999998888777888999999864
No 69
>4e2i_2 DNA polymerase alpha subunit B; replication initiation, hydrolase-DNA binding complex, hydro binding protein complex; HET: DNA; 5.00A {Homo sapiens}
Probab=74.38 E-value=5.7 Score=28.14 Aligned_cols=54 Identities=17% Similarity=0.334 Sum_probs=43.8
Q ss_pred hHHHHHHHHHhCCCcccChHHHHHHHHHHHHH---HHHHHHHHHHHHhHhCCCCCCHH
Q 030526 11 DAKIVKSLLKSMGVEDYEPRVIHQFLELWYRY---VVDVLTDAQVYSEHAGKNTIDCD 65 (175)
Q Consensus 11 Da~~I~~ILks~Gv~~yep~Vv~qLlEfayrY---t~~VL~DA~~yA~HAgR~tI~~e 65 (175)
.++-+..=|..+||+ +++.|+..|+|++-.| ..++..+-..|+.-.|+..++.+
T Consensus 4 s~e~l~~el~~Fgi~-c~d~v~eKl~ElC~~y~~~~~e~V~ew~Afs~s~~~~~lt~~ 60 (78)
T 4e2i_2 4 SAQQLAEELQIFGLD-CEEALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSE 60 (78)
T ss_dssp CHHHHHHHHHHTTCC-CCHHHHHHHHTHHHHSCCCHHHHHHHHTTHHHHTTCCCCCTT
T ss_pred CHHHHHHHHHHcCCC-CcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCCHH
Confidence 467788889999995 9999999999999988 57788888888765577777654
No 70
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=74.00 E-value=14 Score=27.06 Aligned_cols=58 Identities=19% Similarity=0.147 Sum_probs=44.4
Q ss_pred HHHHHHHhCCCcccChHHHHHHHHHHH-------------HHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030526 14 IVKSLLKSMGVEDYEPRVIHQFLELWY-------------RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 73 (175)
Q Consensus 14 ~I~~ILks~Gv~~yep~Vv~qLlEfay-------------rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
++.+||+++|+. -+.+...+.++.. ..+..+|..|..+|...|...|+.+.+-+|+-.
T Consensus 46 ~~~~iL~~~gv~--~~~l~~~l~~~l~~~~~~~~~~~~~s~~~~~vL~~A~~~a~~~~~~~i~~eHlLlall~ 116 (146)
T 3fh2_A 46 VAAKALESMGIS--LDAVRQEVEEIIGQGSQPTTGHIPFTPRAKKVLELSLREGLQMGHKYIGTEFLLLGLIR 116 (146)
T ss_dssp HHHHHHHHTTCC--HHHHHHHHHHHHCCCSCCCCSCCCBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred hHHHHHHHcCCC--HHHHHHHHHHHhccCCCCCcCCCcCCHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHh
Confidence 577899999985 1334444444432 356789999999999999999999999999854
No 71
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=73.10 E-value=15 Score=26.34 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=41.9
Q ss_pred HHHHHHhCCCcccChHHHHHHHHHHHHH------------------HHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030526 15 VKSLLKSMGVEDYEPRVIHQFLELWYRY------------------VVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 73 (175)
Q Consensus 15 I~~ILks~Gv~~yep~Vv~qLlEfayrY------------------t~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
+..||+++|+. -+.+...+-++..++ +..+|..|..+|...|...|+.+.+-+|+-.
T Consensus 40 ~~~iL~~~g~~--~~~l~~~l~~~l~~~~p~~~~~~~~~~~~~s~~~~~~l~~A~~~A~~~~~~~i~~ehLLlall~ 114 (143)
T 1k6k_A 40 AREALEACSVD--LVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFS 114 (143)
T ss_dssp HHHHHHHTTCC--HHHHHHHHHHHHHHHSCBCCSSCSCCSCEECHHHHHHHHHHHHHHHSSSCSCBCHHHHHHHHTT
T ss_pred HHHHHHHcCCC--HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 78899999985 123334443443332 4468999999999999999999999999843
No 72
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=72.30 E-value=22 Score=25.29 Aligned_cols=59 Identities=19% Similarity=0.229 Sum_probs=47.4
Q ss_pred HHHHHHhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhC-CCCCCHHHHHHHHHH
Q 030526 15 VKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAG-KNTIDCDDVKLAVQS 73 (175)
Q Consensus 15 I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAg-R~tI~~eDVrLAI~~ 73 (175)
|++|+...--+.+++.|+..|--++.-++.+|.+.|+...+.-| ..-|...-|+.|...
T Consensus 22 vKrl~~~~~~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rr 81 (89)
T 1bh9_B 22 IKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRR 81 (89)
T ss_dssp HHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Confidence 44444443225799999999999999999999999999988765 457899999999865
No 73
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=72.14 E-value=2.6 Score=32.75 Aligned_cols=62 Identities=16% Similarity=0.228 Sum_probs=36.2
Q ss_pred HHHHHHHHhCCCcccChHHHHHHHHHH----HHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHh
Q 030526 13 KIVKSLLKSMGVEDYEPRVIHQFLELW----YRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSK 74 (175)
Q Consensus 13 ~~I~~ILks~Gv~~yep~Vv~qLlEfa----yrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r 74 (175)
.++...++..|...-..-....|.... -+....++..|..+|...|+..|+.+|++.|++..
T Consensus 184 ~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~ 249 (262)
T 2qz4_A 184 EIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAVERV 249 (262)
T ss_dssp HHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBCCHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 366677788887533222334555433 35666778888888887888999999999999763
No 74
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=72.08 E-value=4.1 Score=27.07 Aligned_cols=60 Identities=20% Similarity=0.256 Sum_probs=41.8
Q ss_pred HHHHHHHHhCCC-cccChHHHHHHHH----HHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhh
Q 030526 13 KIVKSLLKSMGV-EDYEPRVIHQFLE----LWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKV 75 (175)
Q Consensus 13 ~~I~~ILks~Gv-~~yep~Vv~qLlE----fayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~ 75 (175)
.++...|+.+.+ .+++ ...|.+ |.-.=...+..+|..+|-..++..|+.+|+.-|++.-.
T Consensus 10 ~Il~~~l~~~~~~~~~d---l~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~ 74 (78)
T 3kw6_A 10 DILKIHSRKMNLTRGIN---LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 74 (78)
T ss_dssp HHHHHHHTTSEECTTCC---HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCccC---HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 455666666654 2333 334444 44445678889999999999999999999999997643
No 75
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=71.43 E-value=7.5 Score=30.68 Aligned_cols=60 Identities=17% Similarity=0.202 Sum_probs=40.8
Q ss_pred HHHHHHHhCCCcccChHHHHHHHHH----HHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhh
Q 030526 14 IVKSLLKSMGVEDYEPRVIHQFLEL----WYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKV 75 (175)
Q Consensus 14 ~I~~ILks~Gv~~yep~Vv~qLlEf----ayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~ 75 (175)
++...++..++. ++.....|... .-+-...++..|..+|-..++..|+.+|++.|++.-.
T Consensus 196 il~~~~~~~~~~--~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~ 259 (285)
T 3h4m_A 196 ILKIHTRKMNLA--EDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIM 259 (285)
T ss_dssp HHHHHHTTSCBC--TTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCC--CcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHH
Confidence 444455555543 12123444433 4456778899999999999999999999999998643
No 76
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=67.30 E-value=22 Score=25.64 Aligned_cols=58 Identities=12% Similarity=0.186 Sum_probs=42.7
Q ss_pred HHHHHHHhCCCcccChHHHHHHHHHHH------------HHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030526 14 IVKSLLKSMGVEDYEPRVIHQFLELWY------------RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 73 (175)
Q Consensus 14 ~I~~ILks~Gv~~yep~Vv~qLlEfay------------rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
++..||+.+|+. -+.+...+-++.. .-+..+|..|..+|...|...|+.+.+-+|+-.
T Consensus 45 ~~~~iL~~~g~~--~~~l~~~l~~~l~~~~~~~~~~~~s~~~~~vL~~A~~~A~~~~~~~i~~ehlLlall~ 114 (150)
T 2y1q_A 45 IAAKALQALGLG--SEKIQKEVESLIGRAQEMSQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIR 114 (150)
T ss_dssp HHHHHHHHTTCC--HHHHHHHHHHHHCCC-----CCEECHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHcCCC--HHHHHHHHHHHhccCCcccccCCCCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHh
Confidence 578899999985 1233333333321 346778999999999999999999999999854
No 77
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=64.96 E-value=8.3 Score=31.35 Aligned_cols=54 Identities=13% Similarity=0.196 Sum_probs=37.2
Q ss_pred HHHHHHHHhCCCcccChHHHHHHHHHHH---HHHHHHHHHHHHHHhHhCCCCCCHHHHHHHH
Q 030526 13 KIVKSLLKSMGVEDYEPRVIHQFLELWY---RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAV 71 (175)
Q Consensus 13 ~~I~~ILks~Gv~~yep~Vv~qLlEfay---rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI 71 (175)
.++..+++..|+ .++++++..|.+.+. |.+..++..+..|+ ...|+.+||+-++
T Consensus 185 ~~l~~~~~~~~~-~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~~----~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 185 HQLEHILNEEHI-AHEPRALQLLARAAEGSLRDALSLTDQAIASG----DGQVSTQAVSAML 241 (373)
T ss_dssp HHHHHHHHHHTC-CBCHHHHHHHHHHSSSCHHHHHHHHHHHHHHT----TTCBCHHHHHHHT
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhc----CCcccHHHHHHHh
Confidence 456666777887 489999988888865 44555555554443 3579999987664
No 78
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=64.22 E-value=7.7 Score=34.27 Aligned_cols=61 Identities=11% Similarity=0.141 Sum_probs=44.9
Q ss_pred HHHHHHHHh-------CCCcccChHHHHHHHHHHH---HHHHHHHHHHHHHHhHh--CCCCCCHHHHHHHHHHh
Q 030526 13 KIVKSLLKS-------MGVEDYEPRVIHQFLELWY---RYVVDVLTDAQVYSEHA--GKNTIDCDDVKLAVQSK 74 (175)
Q Consensus 13 ~~I~~ILks-------~Gv~~yep~Vv~qLlEfay---rYt~~VL~DA~~yA~HA--gR~tI~~eDVrLAI~~r 74 (175)
.++..+++. .++ .++++++..|.+++. |.+..+|+.|..++... |+..|+.+||+-+++.+
T Consensus 172 ~il~~~l~~~~~~~~~~~~-~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 172 QVLTQAMEDKTRGYGGQDI-VLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGER 244 (447)
T ss_dssp HHHHHHHHCTTTSSTTSSE-ECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCC
T ss_pred HHHHHHHHHHhhhhccccC-cCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhhh
Confidence 455666665 233 589999999999986 66667777777776533 56689999999998764
No 79
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=63.84 E-value=18 Score=24.12 Aligned_cols=40 Identities=13% Similarity=0.249 Sum_probs=28.9
Q ss_pred CCChhHHHHHHHHHhCCCcccChHHHHHHHHHH-------HHHHHHHHHH
Q 030526 7 DLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELW-------YRYVVDVLTD 49 (175)
Q Consensus 7 ~~PrDa~~I~~ILks~Gv~~yep~Vv~qLlEfa-------yrYt~~VL~D 49 (175)
.-|.+.+.|...+...| |++++|..+++.| .+|+..||.+
T Consensus 18 ls~~e~~~i~~w~~~~~---~~~elI~~A~~~a~~~~~~s~~Yi~~Il~~ 64 (78)
T 2zc2_A 18 LSPFELEDLQKTVSDDK---TDPDLVRSALREAVFNGKTNWNYIQAILRN 64 (78)
T ss_dssp CCHHHHHHHHHHHTTTC---CCHHHHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 34667777777777765 7788888888887 3677777654
No 80
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=59.65 E-value=11 Score=33.98 Aligned_cols=45 Identities=16% Similarity=0.112 Sum_probs=36.9
Q ss_pred ccChHHHHHHHHHHH-------------HHHHHHHHHHHHHHhHhCCCCCCHHHHHHH
Q 030526 26 DYEPRVIHQFLELWY-------------RYVVDVLTDAQVYSEHAGKNTIDCDDVKLA 70 (175)
Q Consensus 26 ~yep~Vv~qLlEfay-------------rYt~~VL~DA~~yA~HAgR~tI~~eDVrLA 70 (175)
.+++.++..+.++.. |....++.-|+.+|...||..|+.+||++|
T Consensus 225 ~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~~a 282 (500)
T 3nbx_X 225 TLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLILL 282 (500)
T ss_dssp BCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGGGG
T ss_pred cCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHHHH
Confidence 477788877777763 456668999999999999999999999944
No 81
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=59.34 E-value=13 Score=32.53 Aligned_cols=60 Identities=20% Similarity=0.274 Sum_probs=44.5
Q ss_pred HHHHHHHhCCCcccChHHHHHHHHHHH---HHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhh
Q 030526 14 IVKSLLKSMGVEDYEPRVIHQFLELWY---RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKV 75 (175)
Q Consensus 14 ~I~~ILks~Gv~~yep~Vv~qLlEfay---rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~ 75 (175)
++...++..|+ .++++++..|...+. |.+..+|..+..+|...|+ .|+.++++-|++...
T Consensus 271 iL~~~~~~~~~-~i~~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~-~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 271 IARKMLEIEHG-ELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGK-EVDLKEAILLLKDFI 333 (440)
T ss_dssp HHHHHHHHHTC-CCCTTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSS-CCCHHHHHHHTSTTT
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHh
Confidence 34444455576 489999888887754 6677788888888887775 699999999887643
No 82
>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG, U function; HET: MSE; 1.50A {Enterococcus faecalis} SCOP: a.275.1.1
Probab=58.53 E-value=33 Score=23.33 Aligned_cols=47 Identities=11% Similarity=0.164 Sum_probs=36.4
Q ss_pred HHHHHHhCCCcccChHHHHHHHHHHHHH---------HHHHHHHHHHHHhHhCCCC
Q 030526 15 VKSLLKSMGVEDYEPRVIHQFLELWYRY---------VVDVLTDAQVYSEHAGKNT 61 (175)
Q Consensus 15 I~~ILks~Gv~~yep~Vv~qLlEfayrY---------t~~VL~DA~~yA~HAgR~t 61 (175)
+..++...|+--.+|-....|.+++..| ..+++..|..+|-.+|+..
T Consensus 4 ~~~~~e~~g~g~ls~~e~e~i~~w~~~~~~~~~~~~~~~elI~~A~~~av~~~~~~ 59 (83)
T 2i5u_A 4 IRSIWENNGFGLMSSKTMTDFDYWISDFEKIGASQKEAEQLIVKAIEIAIDANARN 59 (83)
T ss_dssp HHHHHHTTTSCSCCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHcCCCC
Confidence 3455666666568888888898888877 8899999999998777654
No 83
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=58.35 E-value=43 Score=30.78 Aligned_cols=61 Identities=23% Similarity=0.400 Sum_probs=45.1
Q ss_pred HHHHHHHh----CCCcccChHHHHHHHHHHHHH---------HHHHHHHHHHHHhH----hCCCCCCHHHHHHHHHHhh
Q 030526 14 IVKSLLKS----MGVEDYEPRVIHQFLELWYRY---------VVDVLTDAQVYSEH----AGKNTIDCDDVKLAVQSKV 75 (175)
Q Consensus 14 ~I~~ILks----~Gv~~yep~Vv~qLlEfayrY---------t~~VL~DA~~yA~H----AgR~tI~~eDVrLAI~~r~ 75 (175)
++..+++. .++ .+++.++..+.+++++| +.+++.+|...+.. .++..|+.+||.-++....
T Consensus 357 il~~l~~~~~~~~~v-~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 357 IINGLKPKYEAHHDV-RYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp HHHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCC-CCCHHHHHHHHHHhhhhcccccCchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHhc
Confidence 44444444 455 48999999999999997 45677777766655 3567899999999987644
No 84
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=58.25 E-value=32 Score=26.55 Aligned_cols=57 Identities=23% Similarity=0.296 Sum_probs=42.9
Q ss_pred HHHHHHHhCCCcccChHHHHHHHHHHH-------------HHHHHHHHHHHHHHh-HhCCCCCCHHHHHHHHHH
Q 030526 14 IVKSLLKSMGVEDYEPRVIHQFLELWY-------------RYVVDVLTDAQVYSE-HAGKNTIDCDDVKLAVQS 73 (175)
Q Consensus 14 ~I~~ILks~Gv~~yep~Vv~qLlEfay-------------rYt~~VL~DA~~yA~-HAgR~tI~~eDVrLAI~~ 73 (175)
++..||+++||.. +.+...+. +.. .-+..||+.|..+|. -.|...|+.+.|=+|+-.
T Consensus 64 ~a~~iL~~~gvd~--~~l~~~l~-~l~~~p~~~~~~~~~S~~l~~vL~~A~~~A~l~~gd~~I~teHLLLALl~ 134 (171)
T 3zri_A 64 DVRLVLKQAGLEV--DQVKQAIA-STYSREQVLDTYPAFSPLLVELLQEAWLLSSTELEQAELRSGAIFLAALT 134 (171)
T ss_dssp HHHHHHHHTTCCH--HHHHHHHH-HHSCCCCCCSSCCEECHHHHHHHHHHHHHHHTTTCCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCH--HHHHHHHH-HHhcCCCCCCCCCCcCHHHHHHHHHHHHHHHHHcCCCEEcHHHHHHHHHh
Confidence 6788999999851 22333333 332 345789999999999 999999999999999843
No 85
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=58.11 E-value=12 Score=29.22 Aligned_cols=60 Identities=18% Similarity=0.245 Sum_probs=38.7
Q ss_pred hHHHHHHHHHhC--CCcccChHH-HHHHHHHHH----HHHHHHHHHHHHHHhHhCCCCCCHHHHHHHH
Q 030526 11 DAKIVKSLLKSM--GVEDYEPRV-IHQFLELWY----RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAV 71 (175)
Q Consensus 11 Da~~I~~ILks~--Gv~~yep~V-v~qLlEfay----rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI 71 (175)
|..-...||+.+ +. ..++++ ...|.+.+. +-...++.+|..+|...++..|+.+|++-|+
T Consensus 187 ~~~~r~~il~~~~~~~-~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 187 DVKGREQILRIHARGK-PLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp CHHHHHHHHHHHHTTS-CBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCC-CCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 444344454432 22 234444 444444433 5567889999999988899999999998875
No 86
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=57.47 E-value=15 Score=28.97 Aligned_cols=56 Identities=11% Similarity=0.076 Sum_probs=37.3
Q ss_pred HHHHHHHHhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHH
Q 030526 13 KIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAV 71 (175)
Q Consensus 13 ~~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI 71 (175)
.++..+++..|+. ++++++..|.+.+......++.....++.. ...|+.+||+.++
T Consensus 168 ~~l~~~~~~~~~~-i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~--~~~i~~~~v~~~~ 223 (319)
T 2chq_A 168 KRLLEICEKEGVK-ITEDGLEALIYISGGDFRKAINALQGAAAI--GEVVDADTIYQIT 223 (319)
T ss_dssp HHHHHHHHTTCCC-BCHHHHHHHHHTTTTCHHHHHHHHHHHHHS--SSCBCHHHHHHHT
T ss_pred HHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHH
Confidence 4566667778874 999999999988765555554444444432 3468888886554
No 87
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=56.12 E-value=10 Score=29.83 Aligned_cols=54 Identities=15% Similarity=0.183 Sum_probs=45.3
Q ss_pred HHHHHHHhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHH
Q 030526 14 IVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDV 67 (175)
Q Consensus 14 ~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDV 67 (175)
-+.++++..+--++.-.=...++||..+-..++|.-|..-|+..||..|..-|+
T Consensus 7 ~~e~lFR~aa~LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DL 60 (148)
T 1wwi_A 7 EFERLFRQAAGLDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDL 60 (148)
T ss_dssp HHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGS
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 356777776333677888899999999999999999999999999998877664
No 88
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=54.67 E-value=17 Score=28.40 Aligned_cols=36 Identities=8% Similarity=0.157 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHh
Q 030526 39 WYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSK 74 (175)
Q Consensus 39 ayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r 74 (175)
.-|-...++..|..+|...++..|+.+|++.|+...
T Consensus 217 ~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~ 252 (257)
T 1lv7_A 217 SGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKI 252 (257)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Confidence 445667888999999999999999999999999763
No 89
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=53.88 E-value=12 Score=34.25 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHh
Q 030526 41 RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSK 74 (175)
Q Consensus 41 rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r 74 (175)
|....++.-|..+|...|+..|+.+||+.|+...
T Consensus 554 R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~ 587 (595)
T 3f9v_A 554 RQLEALIRISEAYAKMALKAEVTREDAERAINIM 587 (595)
T ss_dssp TTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHH
Confidence 3456788888999999999999999999999763
No 90
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=53.40 E-value=19 Score=28.57 Aligned_cols=60 Identities=18% Similarity=0.245 Sum_probs=38.3
Q ss_pred hHHHHHHHHHhC--CCcccChHH-HHHHHHHHH----HHHHHHHHHHHHHHhHhCCCCCCHHHHHHHH
Q 030526 11 DAKIVKSLLKSM--GVEDYEPRV-IHQFLELWY----RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAV 71 (175)
Q Consensus 11 Da~~I~~ILks~--Gv~~yep~V-v~qLlEfay----rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI 71 (175)
|..-...||+.+ +. .+++++ ...|...+. +-...++..|..+|...|+..|+.+|++-|+
T Consensus 211 ~~~~r~~il~~~~~~~-~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 211 DVKGREQILRIHARGK-PLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp CHHHHHHHHHHHHTTS-CBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred CHHHHHHHHHHHHccC-CCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 444444455432 22 234444 344444333 4566789999999988899999999998875
No 91
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=49.53 E-value=39 Score=26.51 Aligned_cols=57 Identities=14% Similarity=0.117 Sum_probs=35.8
Q ss_pred HHHHHHHHhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 030526 13 KIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQ 72 (175)
Q Consensus 13 ~~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~ 72 (175)
.++..+++..|+. ++++++..|.+.+......++......+... ..|+.++|.-++.
T Consensus 173 ~~l~~~~~~~~~~-~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~~--~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 173 KRLLQIIKLEDVK-YTNDGLEAIIFTAEGDMRQAINNLQSTVAGH--GLVNADNVFKIVD 229 (323)
T ss_dssp HHHHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--SSBCHHHHHHHHT
T ss_pred HHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CCcCHHHHHHHHC
Confidence 3455555667874 8999999999988643333333333333222 4699999887764
No 92
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=47.40 E-value=36 Score=23.15 Aligned_cols=59 Identities=24% Similarity=0.200 Sum_probs=42.1
Q ss_pred HHHHHHHHhCCCc-ccChHHHHHHHHHHHHH----HHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHh
Q 030526 13 KIVKSLLKSMGVE-DYEPRVIHQFLELWYRY----VVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSK 74 (175)
Q Consensus 13 ~~I~~ILks~Gv~-~yep~Vv~qLlEfayrY----t~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r 74 (175)
.++...++.+... +++ +..|.+.++-| ...+..+|..+|-..++..|+.+|+.-|++.-
T Consensus 8 ~Il~~~~~~~~~~~dvd---l~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v 71 (88)
T 3vlf_B 8 NIFRIHSKSMSVERGIR---WELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKV 71 (88)
T ss_dssp HHHHHHHTTSCBCSCCC---HHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCccC---HHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHH
Confidence 4566667777543 332 34444444444 67788889889988899999999999999763
No 93
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=45.59 E-value=27 Score=27.55 Aligned_cols=53 Identities=13% Similarity=0.105 Sum_probs=30.9
Q ss_pred HHHHHHHHhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHH
Q 030526 13 KIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVK 68 (175)
Q Consensus 13 ~~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVr 68 (175)
.++..+++..|+. ++++++..|.+.+......++......+..+ ..|+.++|.
T Consensus 176 ~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~--~~i~~~~v~ 228 (327)
T 1iqp_A 176 KRLRYIAENEGLE-LTEEGLQAILYIAEGDMRRAINILQAAAALD--KKITDENVF 228 (327)
T ss_dssp HHHHHHHHTTTCE-ECHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--SEECHHHHH
T ss_pred HHHHHHHHhcCCC-CCHHHHHHHHHHCCCCHHHHHHHHHHHHhcC--CCCCHHHHH
Confidence 3456666677874 9999999988887644444333333333222 245555554
No 94
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=44.98 E-value=39 Score=26.40 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=36.0
Q ss_pred hCCCc-ccChHHHHHHHHHHH-----------HHHHHHHHHHHHHHh--Hh---CCC-CCCHHHHHHHHHH
Q 030526 21 SMGVE-DYEPRVIHQFLELWY-----------RYVVDVLTDAQVYSE--HA---GKN-TIDCDDVKLAVQS 73 (175)
Q Consensus 21 s~Gv~-~yep~Vv~qLlEfay-----------rYt~~VL~DA~~yA~--HA---gR~-tI~~eDVrLAI~~ 73 (175)
..|.. .++++++..|.++++ |.+..++..+...+. .+ |+. .|+.+||+-|++.
T Consensus 228 ~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~ 298 (310)
T 1ofh_A 228 TEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGE 298 (310)
T ss_dssp HTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCS
T ss_pred hcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHh
Confidence 35653 699999999999985 445566666553321 22 222 4999999999865
No 95
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=44.23 E-value=70 Score=25.19 Aligned_cols=55 Identities=13% Similarity=0.222 Sum_probs=37.5
Q ss_pred HHHHHHHHhCCCcccChHHHHHHHHHH-----------HHHHHHHHHHHHHHHhHh----CCCCCCHHHHH
Q 030526 13 KIVKSLLKSMGVEDYEPRVIHQFLELW-----------YRYVVDVLTDAQVYSEHA----GKNTIDCDDVK 68 (175)
Q Consensus 13 ~~I~~ILks~Gv~~yep~Vv~qLlEfa-----------yrYt~~VL~DA~~yA~HA----gR~tI~~eDVr 68 (175)
.++..+++..|+ .+++++...|.+++ -|.+..++..|...+... +...|+.+|+.
T Consensus 211 ~il~~~l~~~~~-~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 211 EIAGHMLDDQNY-QMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLRQANRLFTASSGPLDARALS 280 (309)
T ss_dssp HHHHHHHHHTTC-EECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHHHC---CEEHHHHH
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHh
Confidence 456677788886 59999999999984 477788888887543221 34566666655
No 96
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=43.53 E-value=20 Score=33.12 Aligned_cols=48 Identities=13% Similarity=0.145 Sum_probs=36.7
Q ss_pred ccChHHHHHHHHHHH---------------------HHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030526 26 DYEPRVIHQFLELWY---------------------RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 73 (175)
Q Consensus 26 ~yep~Vv~qLlEfay---------------------rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
.+++.+...+.++.. |....++.-|+.+|...||..|+.+||+.||..
T Consensus 414 ~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L 482 (506)
T 3f8t_A 414 ELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAEL 482 (506)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred eeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHH
Confidence 477777776666532 223346777888999999999999999999976
No 97
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=42.74 E-value=44 Score=28.02 Aligned_cols=60 Identities=17% Similarity=0.161 Sum_probs=40.8
Q ss_pred HHHHHHHHhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHh----Hh------------CCCCCCHHHHHHHHHH
Q 030526 13 KIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSE----HA------------GKNTIDCDDVKLAVQS 73 (175)
Q Consensus 13 ~~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~----HA------------gR~tI~~eDVrLAI~~ 73 (175)
.++..+++..|. .+++.++..|.+.+..|+..-+.....+|- .. +...|+.+|+..|++.
T Consensus 289 ~il~~~~~~~~~-~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~ 364 (389)
T 3vfd_A 289 LLLKNLLCKQGS-PLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKK 364 (389)
T ss_dssp HHHHHHHTTSCC-CSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHHH
Confidence 345566666775 488889999998888776654444444332 11 3457999999999875
No 98
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=42.71 E-value=16 Score=29.58 Aligned_cols=94 Identities=16% Similarity=0.139 Sum_probs=56.1
Q ss_pred HHHHHHHHhCCCcccChHHHHHHHHHHHHHHHH---HHHHHHHHHh----HhCCCCC-CHHHHHHHHHHhhcccc-----
Q 030526 13 KIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVD---VLTDAQVYSE----HAGKNTI-DCDDVKLAVQSKVNSSF----- 79 (175)
Q Consensus 13 ~~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~---VL~DA~~yA~----HAgR~tI-~~eDVrLAI~~r~~~~f----- 79 (175)
.++...++..|+ .++++++..|...+ ..+.+ ++..+..+.. ..+...| +.++|+-++....+...
T Consensus 173 ~il~~~~~~~~~-~l~~~~l~~l~~~~-g~~r~l~~~l~~~~~~~~~~l~~~~~~~i~t~~~i~~~~~~~~~~~~~~i~s 250 (324)
T 1l8q_A 173 KIIKEKLKEFNL-ELRKEVIDYLLENT-KNVREIEGKIKLIKLKGFEGLERKERKERDKLMQIVEFVANYYAVKVEDILS 250 (324)
T ss_dssp HHHHHHHHHTTC-CCCHHHHHHHHHHC-SSHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHSS
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHhC-CCHHHHHHHHHHHHHcCHHHhccccccCCCCHHHHHHHHHHHhCCCHHHHhc
Confidence 355556666787 59999998888877 44444 3333333300 1334568 89999988876433110
Q ss_pred ---CCC--CcHHHHHHHHHhhcCCCCCCCCCCCC
Q 030526 80 ---SQP--PAREVLLELAKNRNKIPLPKSIAGRG 108 (175)
Q Consensus 80 ---~~p--ppre~LlelA~e~N~~PLP~i~~~~G 108 (175)
..+ -+|...+-+|++.-...++.|-..+|
T Consensus 251 ~~~~~~~~~~r~i~~~l~r~~~~~s~~~ig~~~g 284 (324)
T 1l8q_A 251 DKRNKRTSEARKIAMYLCRKVCSASLIEIARAFK 284 (324)
T ss_dssp CCCCSSSHHHHHHHHHHHHHHHCCCHHHHHHHSS
T ss_pred CCCCCccchHHHHHHHHHHHHhCCCHHHHHHHhC
Confidence 001 35666777777766677777654443
No 99
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=42.67 E-value=17 Score=29.18 Aligned_cols=59 Identities=14% Similarity=0.146 Sum_probs=50.0
Q ss_pred ChhHHHHHHHHHhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHH
Q 030526 9 PRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDV 67 (175)
Q Consensus 9 PrDa~~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDV 67 (175)
+-..--+.++++..+--++.-.=...++||..+-..++|.-|..-|+..||..|..-|+
T Consensus 26 vmg~~kferlFR~aagLDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DL 84 (171)
T 1r4v_A 26 PKGFDKLDHYFRTELDIDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADL 84 (171)
T ss_dssp CTTHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGS
T ss_pred cCChHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 45556678888887334688888999999999999999999999999999998877764
No 100
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.79 E-value=39 Score=30.67 Aligned_cols=61 Identities=23% Similarity=0.162 Sum_probs=41.4
Q ss_pred HHHHHHHhCCCc-ccChHHHHHHHH-HHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHh
Q 030526 14 IVKSLLKSMGVE-DYEPRVIHQFLE-LWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSK 74 (175)
Q Consensus 14 ~I~~ILks~Gv~-~yep~Vv~qLlE-fayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r 74 (175)
++...++.+.+. +++-+.+..+.+ |.-.-...|..+|..+|-..++..|+.+|+.-|++..
T Consensus 388 Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~kV 450 (467)
T 4b4t_H 388 IFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKV 450 (467)
T ss_dssp HHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 455556666543 333232322222 4445677889999999988999999999999999753
No 101
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=39.02 E-value=10 Score=30.68 Aligned_cols=56 Identities=14% Similarity=0.278 Sum_probs=33.0
Q ss_pred HHHHHHHhCCCcccCh-HHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030526 14 IVKSLLKSMGVEDYEP-RVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 73 (175)
Q Consensus 14 ~I~~ILks~Gv~~yep-~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
.+..+++..|+. +++ +++..|.+.+...+.+++.....++ +...|+.++|+.++..
T Consensus 180 ~l~~~~~~~~~~-~~~~~~~~~l~~~~~gd~R~a~~~L~~~~---~~~~i~~~~v~~~~~~ 236 (324)
T 3u61_B 180 RLTEICKHEGIA-IADMKVVAALVKKNFPDFRKTIGELDSYS---SKGVLDAGILSLVTND 236 (324)
T ss_dssp HHHHHHHHHTCC-BSCHHHHHHHHHHTCSCTTHHHHHHHHHG---GGTCBCC---------
T ss_pred HHHHHHHHcCCC-CCcHHHHHHHHHhCCCCHHHHHHHHHHHh---ccCCCCHHHHHHHhCC
Confidence 455566777874 887 9999999888766666666655555 3445888888766543
No 102
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.48 E-value=46 Score=30.00 Aligned_cols=58 Identities=17% Similarity=0.218 Sum_probs=40.2
Q ss_pred HHHHHHHHhCCCc-ccChHHHHHHHH----HHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030526 13 KIVKSLLKSMGVE-DYEPRVIHQFLE----LWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 73 (175)
Q Consensus 13 ~~I~~ILks~Gv~-~yep~Vv~qLlE----fayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
.++...++.+.+. +++ ...|.+ |.-.-...|..+|..+|-..++..|+.+|+..|++.
T Consensus 360 ~Il~~~l~~~~l~~dvd---l~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~r 422 (437)
T 4b4t_I 360 KILGIHTSKMNLSEDVN---LETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKER 422 (437)
T ss_dssp HHHHHHHTTSCBCSCCC---HHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCcCC---HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 3455555666543 333 233333 444567788899999998889999999999999864
No 103
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=37.64 E-value=36 Score=22.67 Aligned_cols=37 Identities=14% Similarity=0.147 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHh
Q 030526 38 LWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSK 74 (175)
Q Consensus 38 fayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r 74 (175)
|...=...+..+|...|-..++..|+.+|+..|+...
T Consensus 32 ~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 32 LSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQ 68 (82)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 3444556788888888888899999999999999763
No 104
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.95 E-value=51 Score=29.25 Aligned_cols=59 Identities=20% Similarity=0.241 Sum_probs=40.7
Q ss_pred HHHHHHHHhCCCc-ccChHHHHHHHH----HHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHh
Q 030526 13 KIVKSLLKSMGVE-DYEPRVIHQFLE----LWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSK 74 (175)
Q Consensus 13 ~~I~~ILks~Gv~-~yep~Vv~qLlE----fayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r 74 (175)
.++...++.+++. +++ ...|.+ |.-.-...+..+|..+|-..++..|+.+|+..|+..-
T Consensus 326 ~Il~~~~~~~~l~~dvd---l~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v 389 (405)
T 4b4t_J 326 EILRIHSRKMNLTRGIN---LRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGKV 389 (405)
T ss_dssp HHHHHHHTTSBCCSSCC---HHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCccCC---HHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 3455556666553 333 233333 3445677888899999888899999999999999753
No 105
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=36.80 E-value=31 Score=22.79 Aligned_cols=58 Identities=7% Similarity=0.209 Sum_probs=38.2
Q ss_pred HHHHHHHHhCCCc-ccChHHHHHHHH----HHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030526 13 KIVKSLLKSMGVE-DYEPRVIHQFLE----LWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 73 (175)
Q Consensus 13 ~~I~~ILks~Gv~-~yep~Vv~qLlE----fayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
.++...|+.+... +++ ...|.+ |...=...+..+|...|-..++..|+.+|+.-|++.
T Consensus 8 ~Il~~~l~~~~~~~~vd---l~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~ 70 (83)
T 3aji_B 8 LIFSTITSKMNLSEEVD---LEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKT 70 (83)
T ss_dssp HHHHHHHTTSCBCTTCC---THHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCcccC---HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHH
Confidence 3556666666532 333 233333 333445667788888887778889999999999976
No 106
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=35.76 E-value=1.1e+02 Score=27.96 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=43.3
Q ss_pred HHHHHHhCCCcccChHHHHHHHHHHHH------------------HHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030526 15 VKSLLKSMGVEDYEPRVIHQFLELWYR------------------YVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 73 (175)
Q Consensus 15 I~~ILks~Gv~~yep~Vv~qLlEfayr------------------Yt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
+..||+.+|+. -+.+...|.++..+ -+..+|+.|..+|...|...|+.+.|-+|+-.
T Consensus 40 ~~~iL~~~gvd--~~~l~~~l~~~l~~~~p~~~~~~~~~~~~~s~~~~~vl~~A~~~a~~~~~~~I~~ehlLlall~ 114 (758)
T 1r6b_X 40 AREALEACSVD--LVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFS 114 (758)
T ss_dssp HHHHHHHTTCC--HHHHHHHHHHHHHHHSCBCCCSSSCCCCEECHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHTT
T ss_pred HHHHHHHcCCC--HHHHHHHHHHHHhccCCCCCCccccCCCCcCHHHHHHHHHHHHHHHHcCCCEeeHHHHHHHHhc
Confidence 67899999985 23444444444433 36679999999999999999999999999853
No 107
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}
Probab=35.24 E-value=1.1e+02 Score=24.23 Aligned_cols=79 Identities=16% Similarity=0.132 Sum_probs=47.8
Q ss_pred CCChhHHHHHHHHHhCCCcccChHHHHHHHHHHH--HH--HHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhccccCCC
Q 030526 7 DLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWY--RY--VVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVNSSFSQP 82 (175)
Q Consensus 7 ~~PrDa~~I~~ILks~Gv~~yep~Vv~qLlEfay--rY--t~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~~~f~~p 82 (175)
.+|++-.+...+.+.++ .--..+..|.++.. .+ ..+....... -+| .+|+|+-.|...+...|..|
T Consensus 21 l~pke~~ff~ll~~~a~---~v~~~a~~L~~~l~~~~~~~~~~~~~~I~~-lE~------~aD~i~~~i~~~L~~~fitP 90 (227)
T 3l39_A 21 FTPKEPKFFPLLKQLSD---VLSASSVLLVESMEHDLPTERADYYKQIKD-MER------EGDRLTHLIFDELSTTFITP 90 (227)
T ss_dssp CCCCCCCHHHHHHHHHH---HHHHHHHHHHHHTTCCSHHHHHHHHHHHHH-HHH------HHHHHHHHHHHHHHHCSCCS
T ss_pred hcCCCchHHHHHHHHHH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHH------HHHHHHHHHHHHHHHcCcCC
Confidence 56676666665555543 23344455555544 11 1111111111 112 35889999999999999999
Q ss_pred CcHHHHHHHHHhh
Q 030526 83 PAREVLLELAKNR 95 (175)
Q Consensus 83 ppre~LlelA~e~ 95 (175)
-.|+.+++|+...
T Consensus 91 ~dReDI~~L~~~l 103 (227)
T 3l39_A 91 FDREDIHDLASCM 103 (227)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999999988754
No 108
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=34.60 E-value=23 Score=20.62 Aligned_cols=19 Identities=21% Similarity=0.471 Sum_probs=11.3
Q ss_pred CCCcccChHHHHHHHHHHH
Q 030526 22 MGVEDYEPRVIHQFLELWY 40 (175)
Q Consensus 22 ~Gv~~yep~Vv~qLlEfay 40 (175)
.|+++|+++-+..||+-+-
T Consensus 4 sgvtrfdekqieelldnci 22 (31)
T 4h62_V 4 SGVTRFDEKQIEELLDNCI 22 (31)
T ss_dssp ------CHHHHHHHHHHHH
T ss_pred CccccccHHHHHHHHHHHH
Confidence 4899999999999998764
No 109
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.00 E-value=91 Score=27.59 Aligned_cols=59 Identities=14% Similarity=0.233 Sum_probs=41.0
Q ss_pred HHHHHHHhCCCc-ccChHHHHHHHH----HHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhh
Q 030526 14 IVKSLLKSMGVE-DYEPRVIHQFLE----LWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKV 75 (175)
Q Consensus 14 ~I~~ILks~Gv~-~yep~Vv~qLlE----fayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~ 75 (175)
++..+++.+++. +++ ...|.+ |.-+-...+..+|..+|-..++..|+.+|+..|+...+
T Consensus 352 Il~~~~~~~~l~~~~d---l~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~~~ 415 (428)
T 4b4t_K 352 IFGTIASKMSLAPEAD---LDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQV 415 (428)
T ss_dssp HHHHHHHSSCBCTTCC---HHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCCcccC---HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHhh
Confidence 555666677643 333 333333 33445678888898888888999999999999997644
No 110
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=32.58 E-value=55 Score=23.34 Aligned_cols=57 Identities=23% Similarity=0.258 Sum_probs=40.8
Q ss_pred HHHHHHHhCCCcccChHHHHHHHHHHH---------------HHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 030526 14 IVKSLLKSMGVEDYEPRVIHQFLELWY---------------RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQ 72 (175)
Q Consensus 14 ~I~~ILks~Gv~~yep~Vv~qLlEfay---------------rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~ 72 (175)
++..||+++|+. -+.+...+-++.. .-+..+|..|..+|...|...|+.+.+-+|+-
T Consensus 45 ~~~~iL~~~g~~--~~~l~~~l~~~l~~~p~~~~~~~~~~~s~~~~~vl~~A~~~a~~~~~~~i~~ehlLlall 116 (148)
T 1khy_A 45 SVSPLLTSAGIN--AGQLRTDINQALNRLPQVEGTGGDVQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAAL 116 (148)
T ss_dssp SHHHHHHHHTCC--HHHHHHHHHHHHTTSCCC-------CBCHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred hHHHHHHHcCCC--HHHHHHHHHHHHHhCCCCCCCCCCcCcCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHH
Confidence 567788888874 1223333322221 24567899999999999999999999999996
No 111
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=32.30 E-value=31 Score=23.62 Aligned_cols=65 Identities=20% Similarity=0.251 Sum_probs=42.1
Q ss_pred CCChhHHHHHHHHHh----CCC-cccChHHHHHHHHHH----HHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHh
Q 030526 7 DLPRDAKIVKSLLKS----MGV-EDYEPRVIHQFLELW----YRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSK 74 (175)
Q Consensus 7 ~~PrDa~~I~~ILks----~Gv-~~yep~Vv~qLlEfa----yrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r 74 (175)
.-|.|..--..||+- +.+ .+++ ...|.+.+ -.=...|..+|...|-..++..|+.+|+..|++..
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvd---l~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v 81 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGIN---LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 81 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCC---CHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccC---HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 346676666666554 322 1333 23343333 33456788888888888888999999999999753
No 112
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.74 E-value=61 Score=28.85 Aligned_cols=58 Identities=16% Similarity=0.220 Sum_probs=40.2
Q ss_pred HHHHHHHhCCCc-ccChHHHHHHHH----HHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHh
Q 030526 14 IVKSLLKSMGVE-DYEPRVIHQFLE----LWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSK 74 (175)
Q Consensus 14 ~I~~ILks~Gv~-~yep~Vv~qLlE----fayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r 74 (175)
++...++.+... +++ ...|.+ |.-.-...+..+|..+|-..++..|+.+|+..|++..
T Consensus 360 Il~~~~~~~~~~~d~d---l~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~v 422 (437)
T 4b4t_L 360 IFKIHTAKVKKTGEFD---FEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKV 422 (437)
T ss_dssp HHHHHHHTSCBCSCCC---HHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcccC---HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 455556666542 333 233333 3445677888899999988899999999999999753
No 113
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=31.63 E-value=36 Score=30.08 Aligned_cols=54 Identities=17% Similarity=0.321 Sum_probs=37.1
Q ss_pred HHHHHHHhCCCcccChHHHHHHHHHHH---HHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030526 14 IVKSLLKSMGVEDYEPRVIHQFLELWY---RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 73 (175)
Q Consensus 14 ~I~~ILks~Gv~~yep~Vv~qLlEfay---rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
++..++...|+. ++++++..|.+.+. |.+..+|+.+ + .+++.|+.+||+-++..
T Consensus 217 ~L~~i~~~~~~~-i~~~~l~~la~~s~GdiR~~i~~L~~~---~--~~~~~It~~~v~~~~~~ 273 (516)
T 1sxj_A 217 RLMTIAIREKFK-LDPNVIDRLIQTTRGDIRQVINLLSTI---S--TTTKTINHENINEISKA 273 (516)
T ss_dssp HHHHHHHHHTCC-CCTTHHHHHHHHTTTCHHHHHHHHTHH---H--HHSSCCCTTHHHHHHHH
T ss_pred HHHHHHHHcCCC-CCHHHHHHHHHHcCCcHHHHHHHHHHH---H--hcCCCCchHHHHHHHHh
Confidence 445555666874 89999999888874 4445555433 2 25678999999888763
No 114
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=31.39 E-value=1.1e+02 Score=25.26 Aligned_cols=60 Identities=15% Similarity=0.097 Sum_probs=37.1
Q ss_pred HHHHHHHHhCCCcccChHHHHHHHHHHHHHHHHHH----HHHHHHHhH------------hCCCCCCHHHHHHHHHH
Q 030526 13 KIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVL----TDAQVYSEH------------AGKNTIDCDDVKLAVQS 73 (175)
Q Consensus 13 ~~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL----~DA~~yA~H------------AgR~tI~~eDVrLAI~~ 73 (175)
.++..+++..|+. +++..+..|...+..|+..-+ ..|...+-. .....|+.+|+..|++.
T Consensus 258 ~il~~~~~~~~~~-l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~ 333 (357)
T 3d8b_A 258 QIVINLMSKEQCC-LSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRT 333 (357)
T ss_dssp HHHHHHHHTSCBC-CCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHH
T ss_pred HHHHHHHhhcCCC-ccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHh
Confidence 3556667777753 778888888876665544333 333332222 23357999999999976
No 115
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=31.25 E-value=47 Score=26.18 Aligned_cols=59 Identities=14% Similarity=0.239 Sum_probs=37.4
Q ss_pred HHHHHHHhCCCcccChHHHHHHHHHHHHHHH----HHHHHHHHHHhHh------------CCCCCCHHHHHHHHHH
Q 030526 14 IVKSLLKSMGVEDYEPRVIHQFLELWYRYVV----DVLTDAQVYSEHA------------GKNTIDCDDVKLAVQS 73 (175)
Q Consensus 14 ~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~----~VL~DA~~yA~HA------------gR~tI~~eDVrLAI~~ 73 (175)
++..+++..|. .+++.++..|...+..|+. .++.+|...|-.. ....|+.+|+..|++.
T Consensus 197 il~~~~~~~~~-~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~ 271 (297)
T 3b9p_A 197 LLNRLLQKQGS-PLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKR 271 (297)
T ss_dssp HHHHHHGGGSC-CSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTS
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHH
Confidence 44555666665 4788888888887776655 3344443333322 1357999999988854
No 116
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=30.98 E-value=43 Score=27.36 Aligned_cols=58 Identities=16% Similarity=0.145 Sum_probs=36.0
Q ss_pred HHHHHHHHhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhC---CCCCCHHHHHHHH
Q 030526 13 KIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAG---KNTIDCDDVKLAV 71 (175)
Q Consensus 13 ~~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAg---R~tI~~eDVrLAI 71 (175)
+++..+++..|+ .+++.+...+.+++..-...++......+..++ +..|+.++|..++
T Consensus 176 ~~l~~~~~~~~~-~i~~~~~~~i~~~s~G~~r~~~~~l~~~~~~~~~~~~~~it~~~v~~~~ 236 (340)
T 1sxj_C 176 RRIANVLVHEKL-KLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECC 236 (340)
T ss_dssp HHHHHHHHTTTC-CBCHHHHHHHHHHHTTCHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHT
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCcccccccHHHHHHHh
Confidence 456666666787 488998888888776444444433333333343 3468888886543
No 117
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=30.39 E-value=56 Score=21.29 Aligned_cols=30 Identities=20% Similarity=0.311 Sum_probs=23.6
Q ss_pred ChhHHHHHHHHHhCCCcccChHHHHHHHHHH
Q 030526 9 PRDAKIVKSLLKSMGVEDYEPRVIHQFLELW 39 (175)
Q Consensus 9 PrDa~~I~~ILks~Gv~~yep~Vv~qLlEfa 39 (175)
...+.=|..||++.|| ++++.-+..|....
T Consensus 16 ~~t~~~I~~il~aaGv-eve~~~~~~~~~~L 45 (58)
T 3a1y_A 16 EINEENLKAVLQAAGV-EPEEARIKALVAAL 45 (58)
T ss_dssp CCCHHHHHHHHHHTTC-CCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCC-CccHHHHHHHHHHH
Confidence 4556778999999999 49988887776654
No 118
>2lbf_A 60S acidic ribosomal protein P1; ribosome, stalk, P1/P2; NMR {Homo sapiens}
Probab=30.31 E-value=93 Score=20.95 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030526 37 ELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 73 (175)
Q Consensus 37 EfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
|+++-|+.=+|.|+ | ..|+.+||+--+++
T Consensus 6 ela~~YAAllL~~~-------g-~~~ta~~I~~il~A 34 (69)
T 2lbf_A 6 ELACIYSALILHDD-------E-VTVTEDKINALIKA 34 (69)
T ss_dssp HHHHHHHHHHHHHH-------T-CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-------C-CCCCHHHHHHHHHH
Confidence 78888888887776 6 58999999988877
No 119
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.86 E-value=93 Score=27.61 Aligned_cols=61 Identities=13% Similarity=0.175 Sum_probs=40.8
Q ss_pred HHHHHHHHhCCCc-ccChHHHHHHH-HHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030526 13 KIVKSLLKSMGVE-DYEPRVIHQFL-ELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 73 (175)
Q Consensus 13 ~~I~~ILks~Gv~-~yep~Vv~qLl-EfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
+++...++.+... +++-+.+.... .|.-.-...+..+|..+|-..|+..|+.+|+.-|++.
T Consensus 359 ~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~ 421 (434)
T 4b4t_M 359 QILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISE 421 (434)
T ss_dssp HHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHS
T ss_pred HHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 3455566676542 33322222221 1444567888899999998889999999999999965
No 120
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=26.18 E-value=1.7e+02 Score=24.08 Aligned_cols=59 Identities=15% Similarity=0.342 Sum_probs=36.8
Q ss_pred HHHHHHhCCCcccChH--HHHH---HHHHHHHHHHHHHHHHHHHHhHhC-----------------C--CCCCHHHHHHH
Q 030526 15 VKSLLKSMGVEDYEPR--VIHQ---FLELWYRYVVDVLTDAQVYSEHAG-----------------K--NTIDCDDVKLA 70 (175)
Q Consensus 15 I~~ILks~Gv~~yep~--Vv~q---LlEfayrYt~~VL~DA~~yA~HAg-----------------R--~tI~~eDVrLA 70 (175)
..+++.++||.-..-. +-.+ +-||=|..+..|++=-...-.+.| . ..|+.+||.-|
T Consensus 44 F~~mc~siGVDPlas~kg~ws~~lG~gdfy~eLavqIvEvC~~tr~~nGGli~L~el~~~~~r~Rg~~~~~IS~dDi~rA 123 (234)
T 3cuq_A 44 FQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLEELHQQVLKGRGKFAQDVSQDDLIRA 123 (234)
T ss_dssp HHHHHHHHTCCTTSCTTSHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHTTTTCCSSCCHHHHHHH
T ss_pred HHHHHHHcCCCcccCCcchhhhhcCcchHHHHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHHhcCCccCccCHHHHHHH
Confidence 5677888888744322 1121 347777777777665444333333 1 57999999999
Q ss_pred HHH
Q 030526 71 VQS 73 (175)
Q Consensus 71 I~~ 73 (175)
|+.
T Consensus 124 ik~ 126 (234)
T 3cuq_A 124 IKK 126 (234)
T ss_dssp HHH
T ss_pred HHH
Confidence 976
No 121
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=25.80 E-value=1.6e+02 Score=24.22 Aligned_cols=67 Identities=12% Similarity=0.321 Sum_probs=44.6
Q ss_pred CCCChhHHH---HHHHHHhCCCcccC-----hHHHHHHHHHHHHHHHHHHHHHHHHHhHhCC--------------CCCC
Q 030526 6 EDLPRDAKI---VKSLLKSMGVEDYE-----PRVIHQFLELWYRYVVDVLTDAQVYSEHAGK--------------NTID 63 (175)
Q Consensus 6 ~~~PrDa~~---I~~ILks~Gv~~ye-----p~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR--------------~tI~ 63 (175)
+.+-+|..+ ..+++.++||.-.. ..+.. +-||=|..+..|++--...-.+.|. ..|+
T Consensus 52 ~eI~~dp~fR~~F~~mc~siGVDPLa~s~kg~~~lg-~gdfy~eLavqIvEvC~~tr~~nGGli~l~el~~~~~r~~~IS 130 (233)
T 1u5t_A 52 SELQASPEFRSKFMHMCSSIGIDPLSLFDRDKHLFT-VNDFYYEVCLKVIEICRQTKDMNGGVISFQELEKVHFRKLNVG 130 (233)
T ss_dssp TTTTTCHHHHHHHHHHHHHHTCCHHHHTTSSGGGTT-HHHHHHHHHHHHHHHHHHHTTTSSSCEEHHHHHHTTTTTTTCC
T ss_pred hhcccCHHHHHHHHHHHHHcCCCCCccCCccccccC-cchHHHHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHhhcCCC
Confidence 345566553 67888899987333 22223 4788888888888776665555542 3788
Q ss_pred HHHHHHHHHH
Q 030526 64 CDDVKLAVQS 73 (175)
Q Consensus 64 ~eDVrLAI~~ 73 (175)
.+||.-||+.
T Consensus 131 ~dDi~rAik~ 140 (233)
T 1u5t_A 131 LDDLEKSIDM 140 (233)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888888876
No 122
>2olt_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Shewanella oneidensis} PDB: 2iiu_A*
Probab=25.43 E-value=51 Score=25.72 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHhhccccCCCCcHHHHHHHHHhh
Q 030526 63 DCDDVKLAVQSKVNSSFSQPPAREVLLELAKNR 95 (175)
Q Consensus 63 ~~eDVrLAI~~r~~~~f~~pppre~LlelA~e~ 95 (175)
.+|.++-.|...+...|..|-+|+.++.++...
T Consensus 61 ~aD~l~~~I~~~L~~~~~~P~dredi~~L~~~l 93 (227)
T 2olt_A 61 QGDSLKREIRLTLPSGLFMPVERTDLLELLTQQ 93 (227)
T ss_dssp HHHHHHHHHHHHGGGCCSCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccCCCCHHHHHHHHHHH
Confidence 358899999999999999999999999887654
No 123
>2lbf_B 60S acidic ribosomal protein P2; ribosome, stalk, P1/P2; NMR {Homo sapiens} PDB: 2w1o_A
Probab=21.47 E-value=76 Score=21.57 Aligned_cols=30 Identities=23% Similarity=0.392 Sum_probs=22.4
Q ss_pred ChhHHHHHHHHHhCCCcccChHHHHHHHHHH
Q 030526 9 PRDAKIVKSLLKSMGVEDYEPRVIHQFLELW 39 (175)
Q Consensus 9 PrDa~~I~~ILks~Gv~~yep~Vv~qLlEfa 39 (175)
...+.=|..||++.||+ +++.-+..|+..+
T Consensus 18 ~~ta~~I~~il~aaGve-vd~~~~~~~~~aL 47 (70)
T 2lbf_B 18 SPSAKDIKKILDSVGIE-ADDDRLNKVISEL 47 (70)
T ss_dssp SCCHHHHHHHHHTTTCC-CCTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCC-ccHHHHHHHHHHH
Confidence 34566789999999995 8887777766543
No 124
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=21.47 E-value=2.7e+02 Score=22.28 Aligned_cols=14 Identities=43% Similarity=0.470 Sum_probs=10.3
Q ss_pred HHHHHHHHHhCCCc
Q 030526 12 AKIVKSLLKSMGVE 25 (175)
Q Consensus 12 a~~I~~ILks~Gv~ 25 (175)
..-+..++.++||.
T Consensus 46 ~~~f~~m~~slGvd 59 (218)
T 3cuq_B 46 TIRFKSYLLSMGIA 59 (218)
T ss_dssp SHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCC
Confidence 45577788888886
No 125
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=21.40 E-value=2.9e+02 Score=22.04 Aligned_cols=66 Identities=18% Similarity=0.275 Sum_probs=35.2
Q ss_pred cccChHHHHHHHHHHHH----HHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhccccCCCCcHHHHHHHHHhhc
Q 030526 25 EDYEPRVIHQFLELWYR----YVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVNSSFSQPPAREVLLELAKNRN 96 (175)
Q Consensus 25 ~~yep~Vv~qLlEfayr----Yt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~~~f~~pppre~LlelA~e~N 96 (175)
.++++.+...||+|+|. ...+.+.+-...|+. ...+.++..+...+..... .-.--.++.+|...|
T Consensus 219 ~~~~~~~f~~~L~~iYt~~~~~~~~~~~~ll~~A~~-----~~~~~l~~~c~~~l~~~~~-~~n~~~~l~~A~~~~ 288 (312)
T 3hqi_A 219 NDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADK-----YALERLKVMCEDALCSNLS-VENAAEILILADLHS 288 (312)
T ss_dssp CSSCHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHTTCC-TTTHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHH-----hCHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHhC
Confidence 47899999999999995 223333333444433 2335555555554433222 122334555555444
No 126
>3rq9_A TSI2, type VI secretion immunity protein; antitoxin, TSE2-BI protein; 1.00A {Pseudomonas aeruginosa} PDB: 3vpv_A
Probab=21.20 E-value=42 Score=23.85 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhhccccCCCCcHHHHH
Q 030526 64 CDDVKLAVQSKVNSSFSQPPAREVLL 89 (175)
Q Consensus 64 ~eDVrLAI~~r~~~~f~~pppre~Ll 89 (175)
++|+++|.+. .-..|+.-||.+.|+
T Consensus 48 AdDLk~AY~~-a~~~Ys~LPpY~~Li 72 (85)
T 3rq9_A 48 ADDLKNAYEQ-ALGQYSGLPPYDRLI 72 (85)
T ss_dssp HHHHHHHHHH-HHHHCSSCCCHHHHT
T ss_pred hHHHHHHHHH-HHHhhcCCCCHHHHh
Confidence 6899999987 446888899999887
No 127
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=20.85 E-value=2.9e+02 Score=25.92 Aligned_cols=71 Identities=17% Similarity=0.162 Sum_probs=48.2
Q ss_pred HHHHHHHhCCCcccChHHHHHHHHHHH---------------HHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhccc
Q 030526 14 IVKSLLKSMGVEDYEPRVIHQFLELWY---------------RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVNSS 78 (175)
Q Consensus 14 ~I~~ILks~Gv~~yep~Vv~qLlEfay---------------rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~~~ 78 (175)
++..||+.+|+. -..+...|..+.. .-+..+|+.|..+|...|...|+.+.+-+|+-..-+.
T Consensus 45 ~~~~iL~~~gvd--~~~l~~~l~~~l~~~p~~~~~~~~~~~S~~~~~vL~~A~~~a~~~g~~~I~~ehlLlall~~~~~- 121 (854)
T 1qvr_A 45 LAWRLLEKAGAD--PKALKELQERELARLPKVEGAEVGQYLTSRLSGALNRAEGLMEELKDRYVAVDTLVLALAEATPG- 121 (854)
T ss_dssp HHHHHHHTTSSC--HHHHHHHHHHHHHTSCCCCGGGTTCEECHHHHHHHHHHHHHHHTTTCSSCCHHHHHHHHHHHSTT-
T ss_pred HHHHHHHHcCCC--HHHHHHHHHHHHhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcEeeHHHHHHHHHhcccc-
Confidence 567889999985 1233333333332 2466789999999999999999999999999754322
Q ss_pred cCCCCcHHHHHH
Q 030526 79 FSQPPAREVLLE 90 (175)
Q Consensus 79 f~~pppre~Lle 90 (175)
. .+++.+..
T Consensus 122 ~---~~~~~~~~ 130 (854)
T 1qvr_A 122 L---PGLEALKG 130 (854)
T ss_dssp S---CCHHHHHH
T ss_pred c---CCHHHHHH
Confidence 1 44555543
No 128
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=20.26 E-value=31 Score=26.79 Aligned_cols=34 Identities=12% Similarity=0.239 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030526 40 YRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 73 (175)
Q Consensus 40 yrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
-+-...++..|..+|...++..|+.+|++.|++.
T Consensus 219 g~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~ 252 (268)
T 2r62_A 219 GADLANIINEAALLAGRNNQKEVRQQHLKEAVER 252 (268)
T ss_dssp HHHHHHHHHHHHHTTSSSCCCSCCHHHHHTSCTT
T ss_pred HHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHH
Confidence 3567788888888888888899999999988764
Done!