BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>030531
MLHAFPSLTLTVQIPSHFLSKYQNHHKFMPLFLSKSFLFLPTRPFSSISNFTSYMMSSFS
PPKPKTRLRGVVFDMDGTLTVPVIDFPAMYRAVLGEDEYKRVKAENPTGIDILHHIESWS
PDLQRHAYQTIADFERQGLDRLQIMPGTAQLCGFLDSKKIRSSSTVFKVSFFRHT

High Scoring Gene Products

Symbol, full name Information P value
AT2G33255 protein from Arabidopsis thaliana 1.1e-41
GSU_0694
HAD-superfamily hydrolase, subfamily IA, variant 1 		protein from Geobacter sulfurreducens PCA 0.00015

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030531
        (175 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:505006285 - symbol:AT2G33255 species:3702 "Ara...   442  1.1e-41   1
TIGR_CMR|GSU_0694 - symbol:GSU_0694 "HAD-superfamily hydr...   106  0.00015   1


>TAIR|locus:505006285 [details] [associations]
            symbol:AT2G33255 species:3702 "Arabidopsis thaliana"
            [GO:0003824 "catalytic activity" evidence=IEA] [GO:0008152
            "metabolic process" evidence=IEA] [GO:0008967 "phosphoglycolate
            phosphatase activity" evidence=IEA] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0016787 "hydrolase activity" evidence=ISS]
            [GO:0006949 "syncytium formation" evidence=RCA] InterPro:IPR006439
            GO:GO:0009507 EMBL:CP002685 Gene3D:3.40.50.1000 InterPro:IPR023214
            SUPFAM:SSF56784 Pfam:PF13419 GO:GO:0008967 EMBL:AC002334
            TIGRFAMs:TIGR01549 HOGENOM:HOG000192708 IPI:IPI00539143
            RefSeq:NP_850204.2 UniGene:At.26617 ProteinModelPortal:Q8RYE9
            SMR:Q8RYE9 PRIDE:Q8RYE9 EnsemblPlants:AT2G33255.1 GeneID:817888
            KEGG:ath:AT2G33255 TAIR:At2g33255 InParanoid:Q8RYE9 OMA:VHDFPAI
            PhylomeDB:Q8RYE9 ProtClustDB:CLSN2693346 Genevestigator:Q8RYE9
            Uniprot:Q8RYE9
        Length = 245

 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 86/121 (71%), Positives = 102/121 (84%)

Query:    42 TRPFSSISNFTSYMMSSFS-PPKPKTRLRGVVFDMDGTLTVPVIDFPAMYRAVLGEDEYK 100
             +R F S++   S  +S  +     KTRLRGVVFDMDGTLTVPVIDF AMYRAVLGED YK
Sbjct:     6 SRTFISLTLRPSCSISMANLTTNAKTRLRGVVFDMDGTLTVPVIDFAAMYRAVLGEDAYK 65

Query:   101 RVKAENPTGIDILHHIESWSPDLQRHAYQTIADFERQGLDRLQIMPGTAQLCGFLDSKKI 160
             R+KAE+P+GIDILHHIESWSPD Q+ AY+ IAD+E+QG+D+LQIMPGTA+LCGFLDSKKI
Sbjct:    66 RIKAESPSGIDILHHIESWSPDKQQKAYEIIADYEKQGIDKLQIMPGTAELCGFLDSKKI 125

Query:   161 R 161
             +
Sbjct:   126 K 126


>TIGR_CMR|GSU_0694 [details] [associations]
            symbol:GSU_0694 "HAD-superfamily hydrolase, subfamily IA,
            variant 1" species:243231 "Geobacter sulfurreducens PCA"
            [GO:0008152 "metabolic process" evidence=ISS] [GO:0016787
            "hydrolase activity" evidence=ISS] InterPro:IPR006439
            Gene3D:3.40.50.1000 InterPro:IPR023214 SUPFAM:SSF56784
            EMBL:AE017180 GenomeReviews:AE017180_GR Pfam:PF13419 GO:GO:0008967
            TIGRFAMs:TIGR01549 HOGENOM:HOG000248344 OMA:VHDFPAI
            RefSeq:NP_951751.1 ProteinModelPortal:Q74FB5 GeneID:2687057
            KEGG:gsu:GSU0694 PATRIC:22024145 ProtClustDB:CLSK827996
            BioCyc:GSUL243231:GH27-619-MONOMER Uniprot:Q74FB5
        Length = 214

 Score = 106 (42.4 bits), Expect = 0.00015, P = 0.00015
 Identities = 31/90 (34%), Positives = 44/90 (48%)

Query:    72 VFDMDGTLTVPVIDFPAMYRAVLGEDEYKRVKAENPTGIDILHHIESWSPDLQRHAYQTI 131
             +FDMDGTLT PV DF A+ RA LG           P G DIL H+++      R  +  +
Sbjct:    21 IFDMDGTLTEPVHDFAAI-RAALGV----------PAGCDILGHLDTLPEGESRRLHGLL 69

Query:   132 ADFERQGLDRLQIMPGTAQLCGFLDSKKIR 161
              + E +   R +   G  +L   LD + +R
Sbjct:    70 DEIEIELAGRAEASAGARRLVQALDRRGVR 99


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.136   0.410    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      175       160   0.00097  106 3  11 22  0.45    31
                                                     30  0.43    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  594 (63 KB)
  Total size of DFA:  148 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.41u 0.12s 15.53t   Elapsed:  00:00:01
  Total cpu time:  15.41u 0.12s 15.53t   Elapsed:  00:00:01
  Start:  Sat May 11 05:01:43 2013   End:  Sat May 11 05:01:44 2013

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