BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030531
         (175 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3M9L|A Chain A, Crystal Structure Of Probable Had Family Hydrolase From
           Pseudomonas Fluorescens Pf-5
 pdb|2YBD|A Chain A, Crystal Structure Of Probable Had Family Hydrolase From
           Pseudomonas Fluorescens Pf-5 With Bound Phosphate
 pdb|3R09|A Chain A, Crystal Structure Of Probable Had Family Hydrolase From
           Pseudomonas Fluorescens Pf-5 With Bound Mg
          Length = 205

 Score = 33.5 bits (75), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 11/90 (12%)

Query: 72  VFDMDGTLTVPVIDFPAMYRAVLGEDEYKRVKAENPTGIDILHHIESWSPDLQRHAYQTI 131
           VFD DGTLT+ V DF A+  A+        + AE+    DIL H+ +   D     +  +
Sbjct: 10  VFDXDGTLTIAVHDFAAIREAL-------SIPAED----DILTHLAALPADESAAKHAWL 58

Query: 132 ADFERQGLDRLQIMPGTAQLCGFLDSKKIR 161
            + ER      +  PG  +L   L  +  R
Sbjct: 59  LEHERDLAQGSRPAPGAVELVRELAGRGYR 88


>pdb|4ASI|A Chain A, Crystal Structure Of Human Acaca C-Terminal Domain
 pdb|4ASI|B Chain B, Crystal Structure Of Human Acaca C-Terminal Domain
 pdb|4ASI|C Chain C, Crystal Structure Of Human Acaca C-Terminal Domain
 pdb|4ASI|D Chain D, Crystal Structure Of Human Acaca C-Terminal Domain
 pdb|4ASI|E Chain E, Crystal Structure Of Human Acaca C-Terminal Domain
 pdb|4ASI|F Chain F, Crystal Structure Of Human Acaca C-Terminal Domain
          Length = 769

 Score = 27.3 bits (59), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 119 WSPDLQRHAYQTIADFERQGL 139
           W PD     YQ I DF R+GL
Sbjct: 449 WFPDSAFKTYQAIKDFNREGL 469


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.136    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,919,031
Number of Sequences: 62578
Number of extensions: 174645
Number of successful extensions: 409
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 407
Number of HSP's gapped (non-prelim): 3
length of query: 175
length of database: 14,973,337
effective HSP length: 92
effective length of query: 83
effective length of database: 9,216,161
effective search space: 764941363
effective search space used: 764941363
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)