BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030531
         (175 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q12486|YOR31_YEAST Putative uncharacterized hydrolase YOR131C OS=Saccharomyces
           cerevisiae (strain ATCC 204508 / S288c) GN=YOR131C PE=1
           SV=1
          Length = 218

 Score = 45.1 bits (105), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 12/98 (12%)

Query: 68  LRGVVFDMDGTLTVPV-IDFPAMYRAVLGEDEYKRVKAENPTGIDILHHIESWSPDLQ-R 125
           ++ VVFDMDGTL +P    FPAM  A+  ED+           IDILH I++   + + +
Sbjct: 13  IKAVVFDMDGTLCLPQPWMFPAMRNAIGLEDK----------SIDILHFIDTLPTEKEKK 62

Query: 126 HAYQTIADFERQGLDRLQIMPGTAQLCGFLDSKKIRSS 163
            A+  I   E + +  +Q  PG   +  +L    I  +
Sbjct: 63  EAHDRIELVEAKAMKEMQPQPGLVDIMRYLTKNGISKN 100


>sp|P38149|DUG2_YEAST Probable di- and tripeptidase DUG2 OS=Saccharomyces cerevisiae
           (strain ATCC 204508 / S288c) GN=DUG2 PE=1 SV=1
          Length = 878

 Score = 35.4 bits (80), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 23/38 (60%)

Query: 96  EDEYKRVKAENPTGIDILHHIESWSPDLQRHAYQTIAD 133
           E+ +K++K++N   I +L+  E W  D   HAYQ + D
Sbjct: 770 EESFKQLKSQNHLEIKVLNEAEGWLGDPTNHAYQILKD 807


>sp|Q5KY23|BIOF_GEOKA Putative 8-amino-7-oxononanoate synthase OS=Geobacillus
           kaustophilus (strain HTA426) GN=bioF PE=3 SV=1
          Length = 390

 Score = 31.6 bits (70), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 61  PPKPKTRLRGVVFDMDGTLT--VPVIDFPAMYRAVLGEDEYKRVKAENPTGIDILHH 115
           P K K  +   VF MDG +     +++    YRAVL  DE        P G  +LHH
Sbjct: 164 PAKRKWIVTDAVFSMDGDMAPLEELVELKRRYRAVLLVDEAHSGGVFGPNGEGLLHH 220


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.137    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,457,865
Number of Sequences: 539616
Number of extensions: 2609583
Number of successful extensions: 7496
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7495
Number of HSP's gapped (non-prelim): 3
length of query: 175
length of database: 191,569,459
effective HSP length: 110
effective length of query: 65
effective length of database: 132,211,699
effective search space: 8593760435
effective search space used: 8593760435
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)