Query 030531
Match_columns 175
No_of_seqs 165 out of 1645
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 15:08:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030531.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030531hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11587 putative phosphatase; 99.6 7.1E-15 1.5E-19 117.7 12.3 106 67-172 2-112 (218)
2 PRK13225 phosphoglycolate phos 99.5 2.9E-14 6.3E-19 118.8 10.1 106 67-173 61-172 (273)
3 COG0637 Predicted phosphatase/ 99.5 6.3E-14 1.4E-18 113.2 10.6 103 67-170 1-113 (221)
4 PLN02770 haloacid dehalogenase 99.5 7.1E-14 1.5E-18 114.4 10.1 112 61-172 15-137 (248)
5 PRK13288 pyrophosphatase PpaX; 99.5 6.9E-14 1.5E-18 111.3 8.6 103 67-172 2-111 (214)
6 TIGR03351 PhnX-like phosphonat 99.5 3E-13 6.6E-18 107.8 11.1 104 68-172 1-116 (220)
7 PRK13226 phosphoglycolate phos 99.5 1.7E-13 3.7E-18 110.8 9.6 109 64-172 8-124 (229)
8 PLN03243 haloacid dehalogenase 99.5 2.8E-13 6.1E-18 112.1 11.0 107 66-172 22-138 (260)
9 COG0546 Gph Predicted phosphat 99.5 3.2E-13 7E-18 108.7 10.2 108 66-173 2-119 (220)
10 TIGR02009 PGMB-YQAB-SF beta-ph 99.4 2.1E-12 4.5E-17 99.9 12.1 100 68-168 1-113 (185)
11 PRK13223 phosphoglycolate phos 99.4 1.7E-12 3.7E-17 107.9 11.8 107 65-171 10-129 (272)
12 PLN02940 riboflavin kinase 99.4 1.3E-12 2.7E-17 113.7 11.4 109 63-172 6-122 (382)
13 PRK10826 2-deoxyglucose-6-phos 99.4 1.9E-12 4.2E-17 103.7 11.0 106 67-172 6-121 (222)
14 PLN02575 haloacid dehalogenase 99.4 2.8E-12 6E-17 111.4 11.8 106 67-172 130-245 (381)
15 PRK13478 phosphonoacetaldehyde 99.4 2.9E-12 6.2E-17 105.7 11.2 35 138-172 96-130 (267)
16 TIGR01422 phosphonatase phosph 99.4 3.5E-12 7.6E-17 104.2 11.4 34 138-171 94-127 (253)
17 PRK06698 bifunctional 5'-methy 99.4 9.2E-13 2E-17 116.7 7.8 111 63-173 236-360 (459)
18 TIGR01449 PGP_bact 2-phosphogl 99.4 3.4E-12 7.4E-17 100.9 9.7 101 71-172 1-114 (213)
19 TIGR01990 bPGM beta-phosphoglu 99.4 6.9E-12 1.5E-16 97.0 10.4 100 70-169 1-113 (185)
20 PLN02779 haloacid dehalogenase 99.3 5.6E-12 1.2E-16 105.6 9.7 31 141-171 142-172 (286)
21 PRK14988 GMP/IMP nucleotidase; 99.3 4.6E-12 9.9E-17 102.4 8.3 34 139-172 89-122 (224)
22 TIGR02253 CTE7 HAD superfamily 99.3 3E-12 6.4E-17 101.9 6.6 33 140-172 91-123 (221)
23 PRK10725 fructose-1-P/6-phosph 99.3 3E-11 6.4E-16 93.9 11.5 104 66-172 3-115 (188)
24 PRK13222 phosphoglycolate phos 99.3 3.2E-11 7E-16 96.0 11.9 107 66-172 4-122 (226)
25 TIGR02247 HAD-1A3-hyp Epoxide 99.3 2.7E-11 5.8E-16 96.1 10.8 32 140-171 91-122 (211)
26 TIGR01454 AHBA_synth_RP 3-amin 99.3 1.4E-11 3E-16 97.5 8.8 97 71-172 1-104 (205)
27 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.3 2.9E-12 6.3E-17 100.1 3.9 34 140-173 77-110 (201)
28 PHA02597 30.2 hypothetical pro 99.3 1.2E-11 2.7E-16 97.2 7.4 98 67-171 1-101 (197)
29 PLN02954 phosphoserine phospha 99.3 2E-11 4.4E-16 97.5 8.6 100 65-173 9-114 (224)
30 PRK11590 hypothetical protein; 99.2 6.8E-11 1.5E-15 94.6 9.1 104 67-173 5-126 (211)
31 TIGR01548 HAD-SF-IA-hyp1 haloa 99.2 7.6E-11 1.7E-15 92.8 9.3 30 143-172 106-135 (197)
32 TIGR01549 HAD-SF-IA-v1 haloaci 99.2 5.9E-11 1.3E-15 89.5 8.0 33 140-172 61-93 (154)
33 TIGR00338 serB phosphoserine p 99.2 6E-11 1.3E-15 94.5 8.1 103 60-172 6-114 (219)
34 TIGR02252 DREG-2 REG-2-like, H 99.2 1.3E-10 2.7E-15 91.6 9.3 31 140-170 102-132 (203)
35 PRK10563 6-phosphogluconate ph 99.2 2.6E-10 5.6E-15 91.0 11.0 101 67-171 3-113 (221)
36 KOG2914 Predicted haloacid-hal 99.2 3.9E-10 8.4E-15 91.5 11.1 107 66-172 8-121 (222)
37 PRK10748 flavin mononucleotide 99.2 1.4E-10 2.9E-15 94.4 8.5 31 140-171 110-140 (238)
38 PLN02919 haloacid dehalogenase 99.2 1.6E-10 3.4E-15 111.7 10.1 108 64-172 71-190 (1057)
39 PRK09449 dUMP phosphatase; Pro 99.1 1.3E-10 2.8E-15 92.9 7.6 31 140-171 92-122 (224)
40 TIGR01428 HAD_type_II 2-haloal 99.1 3.7E-10 8E-15 88.7 10.0 32 140-171 89-120 (198)
41 PRK09552 mtnX 2-hydroxy-3-keto 99.1 1.8E-10 3.9E-15 92.4 8.0 34 140-173 71-104 (219)
42 TIGR02254 YjjG/YfnB HAD superf 99.1 3.4E-10 7.4E-15 89.8 7.9 32 140-172 94-125 (224)
43 PF13419 HAD_2: Haloacid dehal 99.0 4.8E-10 1E-14 84.4 6.3 99 71-171 1-105 (176)
44 TIGR01509 HAD-SF-IA-v3 haloaci 99.0 5.8E-10 1.3E-14 85.6 6.9 30 142-171 84-113 (183)
45 PRK11133 serB phosphoserine ph 99.0 2.4E-09 5.1E-14 91.4 9.6 34 140-173 178-211 (322)
46 PRK13582 thrH phosphoserine ph 99.0 9.4E-10 2E-14 86.6 5.5 33 140-173 65-97 (205)
47 TIGR01672 AphA HAD superfamily 98.9 4.2E-09 9.1E-14 86.3 8.4 76 70-169 65-140 (237)
48 PRK09456 ?-D-glucose-1-phospha 98.9 1.4E-08 3E-13 80.1 10.6 30 142-171 83-112 (199)
49 COG0560 SerB Phosphoserine pho 98.8 1.3E-08 2.7E-13 82.1 8.2 32 142-173 76-107 (212)
50 PLN02811 hydrolase 98.8 2E-08 4.4E-13 80.5 8.7 97 75-171 1-106 (220)
51 TIGR01993 Pyr-5-nucltdase pyri 98.8 5.5E-09 1.2E-13 81.2 5.1 30 140-172 81-110 (184)
52 TIGR01488 HAD-SF-IB Haloacid D 98.8 1.6E-08 3.5E-13 77.5 7.3 34 140-173 70-103 (177)
53 TIGR01545 YfhB_g-proteo haloac 98.8 4.1E-08 8.8E-13 78.9 9.6 33 141-173 92-125 (210)
54 TIGR01489 DKMTPPase-SF 2,3-dik 98.8 2.1E-08 4.6E-13 77.3 7.7 32 141-172 70-101 (188)
55 TIGR03333 salvage_mtnX 2-hydro 98.7 3.9E-08 8.4E-13 78.7 7.1 33 141-173 68-100 (214)
56 TIGR02137 HSK-PSP phosphoserin 98.6 6.6E-08 1.4E-12 77.4 6.0 33 140-173 65-97 (203)
57 TIGR01493 HAD-SF-IA-v2 Haloaci 98.6 5E-08 1.1E-12 74.9 4.2 26 140-172 87-112 (175)
58 TIGR01490 HAD-SF-IB-hyp1 HAD-s 98.6 2.1E-07 4.5E-12 73.0 7.0 32 142-173 86-117 (202)
59 PRK11009 aphA acid phosphatase 98.4 6E-07 1.3E-11 73.7 6.1 76 70-169 65-140 (237)
60 TIGR01681 HAD-SF-IIIC HAD-supe 98.4 3.8E-07 8.2E-12 67.7 3.7 29 143-171 29-58 (128)
61 TIGR01691 enolase-ppase 2,3-di 98.4 4.6E-06 9.9E-11 67.7 10.2 41 131-171 83-123 (220)
62 COG1011 Predicted hydrolase (H 98.3 2E-06 4.3E-11 68.3 7.1 29 141-170 97-125 (229)
63 TIGR01662 HAD-SF-IIIA HAD-supe 98.3 3.9E-07 8.5E-12 67.1 2.4 27 143-169 25-51 (132)
64 PF06941 NT5C: 5' nucleotidase 98.3 1.8E-06 4E-11 67.9 6.0 96 71-171 5-101 (191)
65 TIGR01656 Histidinol-ppas hist 98.3 6.5E-07 1.4E-11 67.6 3.1 28 143-170 27-54 (147)
66 cd01427 HAD_like Haloacid deha 98.3 6.3E-07 1.4E-11 64.2 2.8 34 139-172 20-53 (139)
67 TIGR01533 lipo_e_P4 5'-nucleot 98.3 5.2E-06 1.1E-10 69.3 8.6 74 66-171 73-146 (266)
68 PRK08942 D,D-heptose 1,7-bisph 98.2 6.9E-07 1.5E-11 69.5 2.2 29 142-170 28-56 (181)
69 TIGR01685 MDP-1 magnesium-depe 98.2 7.3E-07 1.6E-11 69.9 1.8 30 139-168 41-70 (174)
70 PRK08238 hypothetical protein; 98.1 7.4E-06 1.6E-10 73.5 6.9 34 140-173 69-102 (479)
71 TIGR01684 viral_ppase viral ph 98.1 3.4E-06 7.4E-11 71.1 4.2 27 146-172 149-175 (301)
72 PHA03398 viral phosphatase sup 98.0 6E-06 1.3E-10 69.7 4.4 28 146-173 151-178 (303)
73 PF06888 Put_Phosphatase: Puta 98.0 1.2E-05 2.7E-10 65.8 5.5 36 139-174 67-104 (234)
74 KOG1615 Phosphoserine phosphat 97.9 6.7E-05 1.5E-09 59.8 8.0 34 140-173 85-118 (227)
75 PF12710 HAD: haloacid dehalog 97.9 1.1E-05 2.3E-10 62.3 3.4 27 146-172 92-118 (192)
76 PF12689 Acid_PPase: Acid Phos 97.7 6.7E-06 1.5E-10 64.2 -0.0 30 139-168 41-70 (169)
77 PF00702 Hydrolase: haloacid d 97.7 1.8E-05 3.9E-10 61.8 1.9 29 141-169 125-153 (215)
78 TIGR01686 FkbH FkbH-like domai 97.6 3.3E-05 7.1E-10 65.7 2.9 29 144-172 32-60 (320)
79 COG4359 Uncharacterized conser 97.6 0.00031 6.7E-09 55.7 7.8 34 140-173 70-103 (220)
80 TIGR01680 Veg_Stor_Prot vegeta 97.4 0.00058 1.3E-08 57.1 7.6 73 67-171 100-173 (275)
81 TIGR01675 plant-AP plant acid 97.4 0.00082 1.8E-08 55.0 8.2 75 66-172 75-149 (229)
82 TIGR01663 PNK-3'Pase polynucle 97.4 0.00023 5E-09 64.6 5.1 27 144-170 198-224 (526)
83 PF03767 Acid_phosphat_B: HAD 97.3 0.00018 3.9E-09 58.7 3.2 30 142-171 114-143 (229)
84 KOG3085 Predicted hydrolase (H 97.3 0.0016 3.4E-08 53.5 8.6 30 140-169 110-139 (237)
85 smart00775 LNS2 LNS2 domain. T 97.2 0.00061 1.3E-08 52.3 5.1 14 70-83 1-14 (157)
86 KOG3120 Predicted haloacid deh 96.9 0.0036 7.8E-08 51.0 7.2 36 139-174 80-116 (256)
87 PRK06769 hypothetical protein; 96.9 0.00075 1.6E-08 52.4 2.8 29 142-170 27-55 (173)
88 TIGR01544 HAD-SF-IE haloacid d 96.8 0.0015 3.3E-08 54.8 4.5 34 140-173 118-151 (277)
89 TIGR01664 DNA-3'-Pase DNA 3'-p 96.6 0.0019 4.1E-08 50.0 3.1 28 144-171 43-70 (166)
90 PF13344 Hydrolase_6: Haloacid 96.6 0.002 4.3E-08 45.9 2.9 30 142-171 13-42 (101)
91 TIGR01261 hisB_Nterm histidino 96.4 0.0025 5.4E-08 49.1 2.8 28 142-169 28-55 (161)
92 PRK01158 phosphoglycolate phos 96.2 0.0025 5.3E-08 50.8 1.7 17 67-83 2-18 (230)
93 PTZ00174 phosphomannomutase; P 96.0 0.0042 9.1E-08 50.7 2.0 18 66-83 3-20 (247)
94 smart00577 CPDc catalytic doma 96.0 0.0026 5.6E-08 48.1 0.7 33 140-173 42-74 (148)
95 PLN02177 glycerol-3-phosphate 95.8 0.084 1.8E-06 47.9 9.8 18 66-83 20-37 (497)
96 PRK15126 thiamin pyrimidine py 95.8 0.0047 1E-07 50.7 1.7 17 67-83 1-17 (272)
97 PRK10530 pyridoxal phosphate ( 95.8 0.0048 1E-07 50.3 1.7 17 67-83 2-18 (272)
98 PRK10976 putative hydrolase; P 95.8 0.005 1.1E-07 50.3 1.7 17 67-83 1-17 (266)
99 TIGR01689 EcbF-BcbF capsule bi 95.7 0.0057 1.2E-07 45.6 1.6 15 68-82 1-15 (126)
100 TIGR02244 HAD-IG-Ncltidse HAD 95.7 0.0062 1.4E-07 52.6 2.1 34 140-173 181-214 (343)
101 COG0561 Cof Predicted hydrolas 95.6 0.006 1.3E-07 49.8 1.7 19 66-84 1-19 (264)
102 TIGR01668 YqeG_hyp_ppase HAD s 95.6 0.016 3.4E-07 44.8 3.9 28 142-169 42-69 (170)
103 PRK10513 sugar phosphate phosp 95.6 0.0065 1.4E-07 49.7 1.7 17 67-83 2-18 (270)
104 PRK10187 trehalose-6-phosphate 95.5 0.046 1E-06 45.3 6.6 15 68-82 14-28 (266)
105 PLN02423 phosphomannomutase 95.5 0.008 1.7E-07 49.2 2.0 18 66-83 4-22 (245)
106 TIGR01487 SPP-like sucrose-pho 95.5 0.0074 1.6E-07 47.9 1.6 16 68-83 1-16 (215)
107 PRK05446 imidazole glycerol-ph 95.3 0.013 2.8E-07 50.9 2.7 29 140-168 27-55 (354)
108 PRK00192 mannosyl-3-phosphogly 95.2 0.0096 2.1E-07 49.2 1.7 18 66-83 2-19 (273)
109 TIGR01456 CECR5 HAD-superfamil 95.1 0.014 2.9E-07 49.7 2.3 15 70-84 2-16 (321)
110 TIGR01670 YrbI-phosphatas 3-de 95.1 0.0096 2.1E-07 45.3 1.1 15 68-82 1-15 (154)
111 PRK09484 3-deoxy-D-manno-octul 95.0 0.011 2.3E-07 46.3 1.3 17 66-82 19-35 (183)
112 TIGR02726 phenyl_P_delta pheny 94.7 0.015 3.2E-07 45.3 1.3 19 65-83 4-22 (169)
113 PRK03669 mannosyl-3-phosphogly 94.7 0.018 4E-07 47.4 1.9 18 66-83 5-22 (271)
114 PHA02530 pseT polynucleotide k 94.4 0.038 8.1E-07 46.0 3.2 33 141-173 185-217 (300)
115 PLN02887 hydrolase family prot 94.4 0.023 4.9E-07 52.4 1.9 19 65-83 305-323 (580)
116 TIGR01482 SPP-subfamily Sucros 94.3 0.018 3.9E-07 45.6 0.9 13 71-83 1-13 (225)
117 TIGR02250 FCP1_euk FCP1-like p 94.2 0.017 3.7E-07 44.3 0.7 33 140-173 55-87 (156)
118 TIGR01452 PGP_euk phosphoglyco 94.1 0.024 5.3E-07 47.0 1.5 28 144-172 144-171 (279)
119 PRK10444 UMP phosphatase; Prov 94.1 0.025 5.4E-07 46.5 1.4 16 68-83 1-16 (248)
120 TIGR01664 DNA-3'-Pase DNA 3'-p 93.9 0.031 6.8E-07 43.1 1.7 17 67-83 12-28 (166)
121 PLN02499 glycerol-3-phosphate 93.7 0.41 8.9E-06 43.4 8.4 18 66-83 6-23 (498)
122 PF08282 Hydrolase_3: haloacid 93.6 0.038 8.2E-07 43.5 1.6 13 71-83 1-13 (254)
123 COG4229 Predicted enolase-phos 93.5 0.86 1.9E-05 36.4 8.9 31 139-169 99-129 (229)
124 PRK12702 mannosyl-3-phosphogly 93.4 0.042 9.1E-07 46.7 1.7 16 68-83 1-16 (302)
125 TIGR01457 HAD-SF-IIA-hyp2 HAD- 93.3 0.041 8.9E-07 45.1 1.4 16 68-83 1-16 (249)
126 COG2503 Predicted secreted aci 93.3 0.18 4E-06 41.7 5.1 31 141-171 120-150 (274)
127 PF03031 NIF: NLI interacting 93.2 0.036 7.8E-07 41.8 0.9 16 69-84 1-16 (159)
128 PLN02645 phosphoglycolate phos 92.7 0.052 1.1E-06 45.9 1.2 18 66-83 26-43 (311)
129 PLN02645 phosphoglycolate phos 92.6 0.13 2.9E-06 43.5 3.6 30 142-171 43-72 (311)
130 TIGR01458 HAD-SF-IIA-hyp3 HAD- 92.5 0.056 1.2E-06 44.5 1.2 30 144-173 121-150 (257)
131 COG1778 Low specificity phosph 92.5 0.057 1.2E-06 41.9 1.1 20 65-84 5-24 (170)
132 TIGR00099 Cof-subfamily Cof su 92.5 0.06 1.3E-06 43.7 1.3 14 70-83 1-14 (256)
133 PF13344 Hydrolase_6: Haloacid 92.4 0.064 1.4E-06 38.0 1.2 13 71-83 1-13 (101)
134 TIGR02463 MPGP_rel mannosyl-3- 92.4 0.064 1.4E-06 42.5 1.3 14 70-83 1-14 (221)
135 TIGR01460 HAD-SF-IIA Haloacid 91.8 0.068 1.5E-06 43.4 0.8 14 71-84 1-14 (236)
136 PRK14502 bifunctional mannosyl 91.8 0.11 2.5E-06 48.6 2.3 20 64-83 412-431 (694)
137 TIGR02461 osmo_MPG_phos mannos 91.4 0.09 2E-06 42.5 1.2 14 70-83 1-14 (225)
138 TIGR02251 HIF-SF_euk Dullard-l 91.3 0.088 1.9E-06 40.4 0.9 32 141-173 40-71 (162)
139 PF08645 PNK3P: Polynucleotide 91.1 0.1 2.3E-06 40.0 1.2 15 69-83 1-15 (159)
140 TIGR01484 HAD-SF-IIB HAD-super 90.9 0.12 2.5E-06 40.4 1.3 14 70-83 1-14 (204)
141 TIGR01486 HAD-SF-IIB-MPGP mann 90.7 0.11 2.4E-06 42.3 1.1 15 70-84 1-15 (256)
142 COG5663 Uncharacterized conser 90.1 0.29 6.4E-06 38.4 2.9 28 142-170 71-98 (194)
143 COG0647 NagD Predicted sugar p 89.6 0.14 3.1E-06 42.8 0.9 19 66-84 6-24 (269)
144 TIGR01525 ATPase-IB_hvy heavy 89.5 0.34 7.5E-06 44.2 3.4 32 141-172 382-414 (556)
145 TIGR02471 sucr_syn_bact_C sucr 89.2 0.18 3.9E-06 40.5 1.2 15 70-84 1-15 (236)
146 TIGR01512 ATPase-IB2_Cd heavy 88.7 0.41 9E-06 43.6 3.2 32 141-172 360-392 (536)
147 TIGR00685 T6PP trehalose-phosp 88.4 0.24 5.3E-06 40.2 1.5 15 68-82 3-17 (244)
148 PF09419 PGP_phosphatase: Mito 88.2 0.26 5.7E-06 38.4 1.5 19 65-83 38-56 (168)
149 TIGR01511 ATPase-IB1_Cu copper 88.0 0.53 1.2E-05 43.1 3.5 32 141-172 403-434 (562)
150 TIGR01459 HAD-SF-IIA-hyp4 HAD- 87.6 0.31 6.8E-06 39.4 1.6 28 145-173 140-167 (242)
151 PF08645 PNK3P: Polynucleotide 87.2 0.45 9.8E-06 36.5 2.2 30 140-169 25-55 (159)
152 PRK06769 hypothetical protein; 87.0 0.38 8.3E-06 37.1 1.7 15 66-80 2-16 (173)
153 TIGR00213 GmhB_yaeD D,D-heptos 86.8 0.31 6.7E-06 37.5 1.1 14 69-82 2-15 (176)
154 COG4996 Predicted phosphatase 86.7 0.33 7.2E-06 36.8 1.1 15 69-83 1-15 (164)
155 TIGR01670 YrbI-phosphatas 3-de 86.6 0.56 1.2E-05 35.5 2.4 22 151-172 36-57 (154)
156 KOG3109 Haloacid dehalogenase- 84.5 5.8 0.00013 32.6 7.4 27 141-169 98-124 (244)
157 COG0241 HisB Histidinol phosph 84.0 1.2 2.7E-05 35.1 3.3 28 142-169 30-57 (181)
158 COG2179 Predicted hydrolase of 83.4 0.65 1.4E-05 36.4 1.5 19 65-83 25-43 (175)
159 TIGR01261 hisB_Nterm histidino 83.4 0.66 1.4E-05 35.6 1.5 15 69-83 2-16 (161)
160 PRK14501 putative bifunctional 83.0 0.64 1.4E-05 43.9 1.5 15 67-81 491-505 (726)
161 KOG2882 p-Nitrophenyl phosphat 82.8 1.4 3.1E-05 37.5 3.4 29 143-171 38-66 (306)
162 smart00577 CPDc catalytic doma 82.2 0.83 1.8E-05 34.2 1.7 15 69-83 3-17 (148)
163 PF11019 DUF2608: Protein of u 81.8 5.1 0.00011 33.1 6.3 27 144-170 82-108 (252)
164 TIGR01485 SPP_plant-cyano sucr 81.7 0.74 1.6E-05 37.3 1.3 12 70-81 3-14 (249)
165 TIGR02245 HAD_IIID1 HAD-superf 81.5 1.1 2.4E-05 35.8 2.2 19 65-83 18-36 (195)
166 TIGR01668 YqeG_hyp_ppase HAD s 79.2 1.2 2.6E-05 34.2 1.7 19 65-83 22-40 (170)
167 COG1877 OtsB Trehalose-6-phosp 78.8 1.2 2.6E-05 37.2 1.7 19 65-83 15-33 (266)
168 PF08235 LNS2: LNS2 (Lipin/Ned 78.5 1.1 2.5E-05 34.5 1.3 13 71-83 2-14 (157)
169 TIGR02251 HIF-SF_euk Dullard-l 78.2 1.2 2.6E-05 34.1 1.3 16 69-84 2-17 (162)
170 KOG2882 p-Nitrophenyl phosphat 78.2 1 2.2E-05 38.3 1.0 19 65-83 19-37 (306)
171 KOG2134 Polynucleotide kinase 78.0 1.9 4.2E-05 38.0 2.7 21 64-84 71-91 (422)
172 PLN02205 alpha,alpha-trehalose 77.5 1.3 2.8E-05 42.9 1.6 17 67-83 595-611 (854)
173 PLN03017 trehalose-phosphatase 77.0 1.3 2.8E-05 38.8 1.4 13 68-80 111-123 (366)
174 COG2179 Predicted hydrolase of 76.8 3.7 7.9E-05 32.2 3.7 31 140-170 43-73 (175)
175 PTZ00445 p36-lilke protein; Pr 74.9 1.3 2.7E-05 36.1 0.7 29 140-168 179-207 (219)
176 smart00266 CAD Domains present 74.9 2 4.4E-05 29.0 1.6 22 68-89 38-59 (74)
177 TIGR01689 EcbF-BcbF capsule bi 74.8 4.5 9.8E-05 30.0 3.6 30 142-171 23-52 (126)
178 TIGR02726 phenyl_P_delta pheny 74.1 1.9 4E-05 33.5 1.5 23 151-173 42-64 (169)
179 PLN02151 trehalose-phosphatase 73.6 1.8 3.9E-05 37.7 1.4 13 68-80 98-110 (354)
180 KOG4549 Magnesium-dependent ph 73.2 3.5 7.7E-05 31.0 2.7 31 140-170 41-71 (144)
181 TIGR01522 ATPase-IIA2_Ca golgi 73.2 3.7 7.9E-05 39.8 3.5 28 143-170 528-555 (884)
182 TIGR02250 FCP1_euk FCP1-like p 73.0 2.3 5E-05 32.5 1.7 18 67-84 5-22 (156)
183 cd06539 CIDE_N_A CIDE_N domain 73.0 2.4 5.3E-05 28.9 1.6 22 68-89 40-61 (78)
184 cd06537 CIDE_N_B CIDE_N domain 72.8 2.5 5.3E-05 29.1 1.6 22 68-89 39-60 (81)
185 PLN02580 trehalose-phosphatase 72.0 2.1 4.5E-05 37.8 1.4 16 68-83 119-134 (384)
186 TIGR01459 HAD-SF-IIA-hyp4 HAD- 72.0 4 8.7E-05 32.9 3.0 18 66-83 6-23 (242)
187 PRK11033 zntA zinc/cadmium/mer 71.5 4.1 8.8E-05 38.8 3.3 30 142-171 567-596 (741)
188 cd01615 CIDE_N CIDE_N domain, 71.1 2.8 6.1E-05 28.6 1.6 22 68-89 40-61 (78)
189 PF05152 DUF705: Protein of un 70.7 2.9 6.4E-05 35.4 2.0 19 65-83 119-137 (297)
190 PRK10671 copA copper exporting 70.4 4.4 9.5E-05 39.0 3.3 31 141-171 648-678 (834)
191 COG5083 SMP2 Uncharacterized p 70.2 2.4 5.2E-05 38.2 1.4 18 67-84 374-391 (580)
192 cd06536 CIDE_N_ICAD CIDE_N dom 69.7 3.2 6.8E-05 28.5 1.6 21 69-89 43-63 (80)
193 PRK13762 tRNA-modifying enzyme 68.9 5.8 0.00013 33.9 3.5 29 141-169 140-168 (322)
194 TIGR01452 PGP_euk phosphoglyco 68.8 5.2 0.00011 33.0 3.1 17 67-83 1-17 (279)
195 TIGR01458 HAD-SF-IIA-hyp3 HAD- 68.6 6 0.00013 32.4 3.4 16 68-83 1-16 (257)
196 PLN02382 probable sucrose-phos 68.5 2.7 5.8E-05 37.2 1.4 13 70-82 11-23 (413)
197 COG0731 Fe-S oxidoreductases [ 68.1 6.9 0.00015 33.3 3.7 32 139-170 88-120 (296)
198 TIGR02244 HAD-IG-Ncltidse HAD 67.0 3 6.4E-05 36.2 1.3 19 65-83 9-27 (343)
199 PF02358 Trehalose_PPase: Treh 66.2 2.9 6.4E-05 33.5 1.1 12 72-83 1-12 (235)
200 PF03031 NIF: NLI interacting 65.9 1.5 3.3E-05 32.8 -0.6 32 141-173 34-65 (159)
201 cd06538 CIDE_N_FSP27 CIDE_N do 63.6 4.9 0.00011 27.5 1.6 21 69-89 40-60 (79)
202 TIGR03365 Bsubt_queE 7-cyano-7 63.0 8.7 0.00019 31.2 3.3 27 144-170 85-111 (238)
203 PRK14129 heat shock protein Hs 61.6 7.4 0.00016 28.0 2.3 24 66-89 17-40 (105)
204 TIGR01497 kdpB K+-transporting 59.2 9.3 0.0002 36.1 3.2 28 143-170 446-473 (675)
205 TIGR01116 ATPase-IIA1_Ca sarco 59.1 11 0.00023 36.8 3.7 27 143-169 537-563 (917)
206 COG4996 Predicted phosphatase 58.9 7 0.00015 29.7 1.9 31 140-170 38-68 (164)
207 PTZ00445 p36-lilke protein; Pr 58.7 12 0.00026 30.5 3.3 25 144-168 76-100 (219)
208 PLN03063 alpha,alpha-trehalose 56.9 5.7 0.00012 38.2 1.4 15 68-82 507-521 (797)
209 PF05116 S6PP: Sucrose-6F-phos 55.7 7 0.00015 31.9 1.5 23 148-170 133-155 (247)
210 PLN03064 alpha,alpha-trehalose 55.6 6 0.00013 38.8 1.3 15 68-82 591-605 (934)
211 PRK05446 imidazole glycerol-ph 55.3 7.6 0.00016 33.8 1.8 17 67-83 1-17 (354)
212 PF02017 CIDE-N: CIDE-N domain 55.1 6.9 0.00015 26.7 1.2 18 70-87 42-59 (78)
213 PHA02530 pseT polynucleotide k 54.9 8.1 0.00018 31.9 1.8 27 140-166 270-296 (300)
214 PRK01122 potassium-transportin 54.9 14 0.0003 35.1 3.5 28 143-170 445-472 (679)
215 KOG1618 Predicted phosphatase 54.7 6.8 0.00015 34.0 1.3 45 17-80 3-47 (389)
216 PF06117 DUF957: Enterobacteri 54.3 12 0.00026 24.5 2.1 22 68-89 24-45 (65)
217 PRK14010 potassium-transportin 53.9 14 0.00031 34.9 3.5 28 143-170 441-468 (673)
218 PRK09484 3-deoxy-D-manno-octul 53.8 9.7 0.00021 29.5 2.0 23 150-172 55-77 (183)
219 TIGR01647 ATPase-IIIA_H plasma 52.5 15 0.00033 35.0 3.4 28 143-170 442-469 (755)
220 COG3785 Uncharacterized conser 51.8 9.4 0.0002 27.6 1.5 24 66-89 26-49 (116)
221 KOG2470 Similar to IMP-GMP spe 51.1 16 0.00035 32.2 3.1 31 144-174 241-271 (510)
222 COG3769 Predicted hydrolase (H 51.1 9.1 0.0002 31.6 1.5 16 66-81 5-20 (274)
223 KOG2469 IMP-GMP specific 5'-nu 50.5 7.3 0.00016 34.6 0.9 25 148-172 203-227 (424)
224 COG0241 HisB Histidinol phosph 47.9 9.4 0.0002 30.1 1.1 17 68-84 5-21 (181)
225 PF09419 PGP_phosphatase: Mito 47.6 30 0.00065 26.9 3.9 30 140-169 56-87 (168)
226 cd05008 SIS_GlmS_GlmD_1 SIS (S 47.3 28 0.0006 24.6 3.4 26 145-170 59-84 (126)
227 KOG1605 TFIIF-interacting CTD 47.2 20 0.00044 29.9 3.0 24 60-83 81-104 (262)
228 PF05822 UMPH-1: Pyrimidine 5' 47.0 13 0.00027 30.9 1.7 30 139-168 86-115 (246)
229 COG4502 5'(3')-deoxyribonucleo 47.0 11 0.00023 29.0 1.2 28 140-168 65-92 (180)
230 TIGR01524 ATPase-IIIB_Mg magne 46.9 20 0.00044 34.8 3.4 27 143-169 515-541 (867)
231 cd05014 SIS_Kpsf KpsF-like pro 46.5 29 0.00063 24.5 3.5 26 144-169 59-84 (128)
232 PRK15122 magnesium-transportin 46.4 20 0.00043 35.1 3.2 27 143-169 550-576 (903)
233 KOG3189 Phosphomannomutase [Li 46.3 14 0.00029 30.1 1.8 15 69-83 12-26 (252)
234 TIGR02826 RNR_activ_nrdG3 anae 46.2 29 0.00062 26.2 3.5 26 144-169 73-98 (147)
235 TIGR01106 ATPase-IIC_X-K sodiu 45.5 23 0.00049 35.0 3.5 27 143-169 568-594 (997)
236 TIGR02109 PQQ_syn_pqqE coenzym 45.4 23 0.00051 30.1 3.2 27 143-169 65-91 (358)
237 TIGR01517 ATPase-IIB_Ca plasma 45.4 22 0.00047 34.8 3.4 28 143-170 579-606 (941)
238 PRK10517 magnesium-transportin 45.1 21 0.00044 34.9 3.1 27 143-169 550-576 (902)
239 PF05761 5_nucleotid: 5' nucle 45.1 13 0.00029 33.3 1.7 32 142-173 182-213 (448)
240 TIGR01523 ATPase-IID_K-Na pota 45.0 22 0.00049 35.3 3.4 28 142-169 645-672 (1053)
241 PRK10076 pyruvate formate lyas 44.9 27 0.00059 28.0 3.3 27 144-170 51-78 (213)
242 COG2217 ZntA Cation transport 44.6 24 0.00053 33.6 3.4 29 142-170 536-564 (713)
243 PF08235 LNS2: LNS2 (Lipin/Ned 44.3 25 0.00055 27.1 3.0 27 143-169 27-53 (157)
244 TIGR02495 NrdG2 anaerobic ribo 43.7 32 0.00069 26.3 3.5 25 145-169 76-100 (191)
245 TIGR01652 ATPase-Plipid phosph 43.5 19 0.0004 35.7 2.6 28 142-169 630-657 (1057)
246 TIGR03278 methan_mark_10 putat 43.2 34 0.00074 30.3 4.0 30 141-170 84-114 (404)
247 COG1180 PflA Pyruvate-formate 43.2 27 0.00059 28.9 3.2 30 141-170 94-123 (260)
248 COG4030 Uncharacterized protei 43.1 1.3E+02 0.0028 25.2 6.9 27 141-167 81-107 (315)
249 PF05761 5_nucleotid: 5' nucle 42.4 13 0.00028 33.5 1.2 19 65-83 9-27 (448)
250 TIGR03470 HpnH hopanoid biosyn 42.4 25 0.00055 29.8 3.0 27 143-169 84-110 (318)
251 cd05013 SIS_RpiR RpiR-like pro 41.8 38 0.00083 23.7 3.5 24 146-169 74-97 (139)
252 TIGR02097 yccV hemimethylated 41.6 24 0.00052 25.2 2.3 23 67-89 16-38 (101)
253 TIGR01494 ATPase_P-type ATPase 40.8 31 0.00066 31.0 3.4 29 142-170 346-374 (499)
254 PRK05301 pyrroloquinoline quin 40.7 33 0.00072 29.5 3.5 29 141-169 72-100 (378)
255 COG3700 AphA Acid phosphatase 40.4 69 0.0015 25.7 4.9 20 68-87 63-82 (237)
256 PRK11145 pflA pyruvate formate 40.0 40 0.00086 27.1 3.7 27 144-170 83-110 (246)
257 TIGR03127 RuMP_HxlB 6-phospho 39.3 41 0.00089 25.6 3.5 25 145-169 85-109 (179)
258 PLN02887 hydrolase family prot 39.1 36 0.00078 31.7 3.6 28 143-170 325-352 (580)
259 KOG2630 Enolase-phosphatase E- 38.4 2.2E+02 0.0047 23.7 7.6 28 142-169 122-149 (254)
260 PF08620 RPAP1_C: RPAP1-like, 38.4 11 0.00023 25.4 0.0 10 71-80 3-12 (73)
261 TIGR01657 P-ATPase-V P-type AT 38.0 35 0.00075 33.9 3.5 28 142-169 655-682 (1054)
262 cd05710 SIS_1 A subgroup of th 37.9 48 0.001 23.6 3.5 26 145-170 60-85 (120)
263 PF10855 DUF2648: Protein of u 37.9 10 0.00022 21.4 -0.1 12 20-31 19-30 (33)
264 PF04037 DUF382: Domain of unk 36.7 13 0.00027 27.8 0.2 16 8-23 26-41 (129)
265 cd05017 SIS_PGI_PMI_1 The memb 36.7 46 0.001 23.6 3.2 25 145-169 56-80 (119)
266 COG0474 MgtA Cation transport 36.5 36 0.00078 33.3 3.3 29 141-169 545-573 (917)
267 COG0602 NrdG Organic radical a 36.2 37 0.0008 27.2 2.9 26 145-170 85-110 (212)
268 TIGR02245 HAD_IIID1 HAD-superf 35.7 25 0.00055 28.0 1.8 30 142-172 44-73 (195)
269 PF01380 SIS: SIS domain SIS d 35.7 54 0.0012 23.0 3.4 26 144-169 65-90 (131)
270 PF05240 APOBEC_C: APOBEC-like 35.0 49 0.0011 21.0 2.7 21 146-166 2-22 (55)
271 PLN03190 aminophospholipid tra 33.8 42 0.00092 33.9 3.4 28 142-169 725-752 (1178)
272 PLN03017 trehalose-phosphatase 33.5 55 0.0012 28.7 3.7 29 142-171 132-160 (366)
273 TIGR00441 gmhA phosphoheptose 33.1 60 0.0013 24.3 3.5 27 144-170 91-117 (154)
274 cd05006 SIS_GmhA Phosphoheptos 33.0 59 0.0013 24.7 3.5 26 144-169 113-138 (177)
275 cd06589 GH31 The enzymes of gl 32.8 45 0.00099 27.3 3.0 25 143-167 63-87 (265)
276 KOG3107 Predicted haloacid deh 31.4 44 0.00095 29.8 2.7 16 68-83 197-212 (468)
277 PRK14502 bifunctional mannosyl 31.1 56 0.0012 31.2 3.5 28 144-171 434-461 (694)
278 PF06189 5-nucleotidase: 5'-nu 30.7 22 0.00049 29.7 0.8 15 70-84 123-137 (264)
279 PRK13937 phosphoheptose isomer 30.7 68 0.0015 24.9 3.5 26 144-169 118-143 (188)
280 PRK13717 conjugal transfer pro 30.6 22 0.00047 26.6 0.6 17 63-79 40-56 (128)
281 cd04795 SIS SIS domain. SIS (S 30.2 67 0.0015 20.7 3.0 22 145-166 60-81 (87)
282 TIGR02493 PFLA pyruvate format 29.9 70 0.0015 25.3 3.5 26 144-169 78-104 (235)
283 TIGR02494 PFLE_PFLC glycyl-rad 29.9 64 0.0014 26.6 3.4 26 144-169 138-164 (295)
284 cd05005 SIS_PHI Hexulose-6-pho 29.9 72 0.0016 24.2 3.5 25 145-169 88-112 (179)
285 COG3882 FkbH Predicted enzyme 28.3 33 0.00072 31.5 1.5 17 67-83 221-237 (574)
286 PF13588 HSDR_N_2: Type I rest 27.6 43 0.00093 23.4 1.7 27 146-172 68-94 (112)
287 PF08494 DEAD_assoc: DEAD/H as 27.6 1.3E+02 0.0028 23.4 4.6 29 145-174 159-187 (187)
288 PLN02588 glycerol-3-phosphate 27.2 62 0.0014 29.8 3.0 19 65-83 47-65 (525)
289 cd04906 ACT_ThrD-I_1 First of 26.2 78 0.0017 21.2 2.8 23 147-169 54-76 (85)
290 cd06595 GH31_xylosidase_XylS-l 25.6 71 0.0015 26.7 3.0 25 143-167 71-95 (292)
291 PF06901 FrpC: RTX iron-regula 25.3 35 0.00075 27.6 0.9 15 69-83 59-73 (271)
292 PRK00414 gmhA phosphoheptose i 25.0 99 0.0021 24.2 3.5 25 145-169 124-148 (192)
293 KOG3040 Predicted sugar phosph 25.0 42 0.00091 27.6 1.4 20 65-84 4-23 (262)
294 cd06592 GH31_glucosidase_KIAA1 24.8 65 0.0014 27.0 2.6 24 143-166 67-90 (303)
295 TIGR02668 moaA_archaeal probab 24.8 77 0.0017 26.2 3.0 24 145-168 70-94 (302)
296 PF13756 Stimulus_sens_1: Stim 24.3 46 0.00099 23.9 1.4 17 67-83 18-35 (112)
297 PRK13938 phosphoheptose isomer 24.3 1E+02 0.0022 24.4 3.5 26 145-170 126-151 (196)
298 cd06599 GH31_glycosidase_Aec37 23.5 71 0.0015 27.0 2.6 25 142-166 69-93 (317)
299 PLN02580 trehalose-phosphatase 23.3 1E+02 0.0022 27.2 3.6 31 140-171 138-168 (384)
300 KOG0206 P-type ATPase [General 23.2 62 0.0014 32.7 2.4 27 142-168 650-676 (1151)
301 cd06594 GH31_glucosidase_YihQ 22.9 81 0.0018 26.7 2.8 25 142-166 67-91 (317)
302 cd03409 Chelatase_Class_II Cla 22.9 98 0.0021 20.8 2.8 22 144-165 43-64 (101)
303 cd06591 GH31_xylosidase_XylS X 22.9 85 0.0018 26.5 3.0 25 142-166 62-86 (319)
304 PRK13602 putative ribosomal pr 22.8 84 0.0018 21.2 2.4 29 143-171 11-39 (82)
305 TIGR02803 ExbD_1 TonB system t 22.6 1.4E+02 0.003 21.4 3.7 28 140-167 93-121 (122)
306 PRK11024 colicin uptake protei 22.5 1.3E+02 0.0029 22.2 3.6 29 140-168 111-140 (141)
307 cd06593 GH31_xylosidase_YicI Y 22.4 88 0.0019 26.1 2.9 27 141-167 61-87 (308)
308 PF13394 Fer4_14: 4Fe-4S singl 22.1 38 0.00083 23.7 0.6 25 146-170 65-91 (119)
309 PLN02151 trehalose-phosphatase 22.0 1.2E+02 0.0025 26.6 3.7 31 140-171 117-147 (354)
310 TIGR01658 EYA-cons_domain eyes 21.6 41 0.00089 28.2 0.7 15 68-82 2-16 (274)
311 PRK13936 phosphoheptose isomer 21.6 1.2E+02 0.0027 23.6 3.5 25 145-169 124-148 (197)
312 cd06598 GH31_transferase_CtsZ 21.4 96 0.0021 26.2 3.0 26 142-167 66-91 (317)
313 PF06594 HCBP_related: Haemoly 20.8 52 0.0011 19.2 0.9 18 65-83 24-41 (43)
314 PRK11557 putative DNA-binding 20.5 1.3E+02 0.0029 24.4 3.6 26 144-169 187-212 (278)
315 KOG0204 Calcium transporting A 20.3 95 0.0021 30.6 2.9 27 143-169 647-673 (1034)
316 KOG3128 Uncharacterized conser 20.3 64 0.0014 27.2 1.6 31 140-170 135-165 (298)
No 1
>PRK11587 putative phosphatase; Provisional
Probab=99.62 E-value=7.1e-15 Score=117.68 Aligned_cols=106 Identities=19% Similarity=0.183 Sum_probs=63.3
Q ss_pred CcceEEEeccccCccChhh-HHHHH--HHHcCChh-HHHhhccCCCHHHHHHHHhc-CChHHHHHHHHHHHHHHHhcCCC
Q 030531 67 RLRGVVFDMDGTLTVPVID-FPAMY--RAVLGEDE-YKRVKAENPTGIDILHHIES-WSPDLQRHAYQTIADFERQGLDR 141 (175)
Q Consensus 67 ~ikaVIFDmDGTLvDSe~~-~~a~~--~~~~g~~~-~~~~~~~~~~~~~i~~~i~~-l~~~~~~~~~~~~~~~~~~~~~~ 141 (175)
++|+|||||||||+||+.. ..++. .+.+|.+. .......|....+.++.+.. .+.+...+....+..+.......
T Consensus 2 ~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (218)
T PRK11587 2 RCKGFLFDLDGTLVDSLPAVERAWSNWADRHGIAPDEVLNFIHGKQAITSLRHFMAGASEAEIQAEFTRLEQIEATDTEG 81 (218)
T ss_pred CCCEEEEcCCCCcCcCHHHHHHHHHHHHHHcCCCHHHHHHHHcCCCHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhcC
Confidence 5899999999999999853 22321 12356543 11111124444444444422 22222111111112222233467
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEcCCCCCC
Q 030531 142 LQIMPGTAQLCGFLDSKKIRSSSTVFKVSFF 172 (175)
Q Consensus 142 ~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f 172 (175)
+.++||+.++|+.|+++|+++||+||++...
T Consensus 82 ~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~ 112 (218)
T PRK11587 82 ITALPGAIALLNHLNKLGIPWAIVTSGSVPV 112 (218)
T ss_pred ceeCcCHHHHHHHHHHcCCcEEEEcCCCchH
Confidence 8899999999999999999999999987643
No 2
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.55 E-value=2.9e-14 Score=118.79 Aligned_cols=106 Identities=22% Similarity=0.222 Sum_probs=65.7
Q ss_pred CcceEEEeccccCccChhh-HHHHH--HHHcCChhHH---HhhccCCCHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCC
Q 030531 67 RLRGVVFDMDGTLTVPVID-FPAMY--RAVLGEDEYK---RVKAENPTGIDILHHIESWSPDLQRHAYQTIADFERQGLD 140 (175)
Q Consensus 67 ~ikaVIFDmDGTLvDSe~~-~~a~~--~~~~g~~~~~---~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 140 (175)
.+++|||||||||+||+.. ...+. .+.+|..... .....+....++.+.. ..++...++..+.+.+.......
T Consensus 61 ~~k~vIFDlDGTLiDS~~~~~~a~~~~~~~~G~~~~~~~~~~~~~g~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 139 (273)
T PRK13225 61 TLQAIIFDFDGTLVDSLPTVVAIANAHAPDFGYDPIDERDYAQLRQWSSRTIVRRA-GLSPWQQARLLQRVQRQLGDCLP 139 (273)
T ss_pred hcCEEEECCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhCccHHHHHHHc-CCCHHHHHHHHHHHHHHHHhhcc
Confidence 4899999999999999953 33331 1224553211 1111233334444433 23322233333334443334456
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEcCCCCCCc
Q 030531 141 RLQIMPGTAQLCGFLDSKKIRSSSTVFKVSFFR 173 (175)
Q Consensus 141 ~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f~ 173 (175)
.+.++||+.++|+.|+++|+++||+||+.+.++
T Consensus 140 ~~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~ 172 (273)
T PRK13225 140 ALQLFPGVADLLAQLRSRSLCLGILSSNSRQNI 172 (273)
T ss_pred cCCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHH
Confidence 788999999999999999999999999987654
No 3
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=99.53 E-value=6.3e-14 Score=113.24 Aligned_cols=103 Identities=20% Similarity=0.197 Sum_probs=61.9
Q ss_pred CcceEEEeccccCccChh-hHHHHHH--HHcCChh---HHHhhccCCCHHHHHHHHhc----CChHHHHHHHHHHHHHHH
Q 030531 67 RLRGVVFDMDGTLTVPVI-DFPAMYR--AVLGEDE---YKRVKAENPTGIDILHHIES----WSPDLQRHAYQTIADFER 136 (175)
Q Consensus 67 ~ikaVIFDmDGTLvDSe~-~~~a~~~--~~~g~~~---~~~~~~~~~~~~~i~~~i~~----l~~~~~~~~~~~~~~~~~ 136 (175)
++++|||||||||+||+. +..+|.+ +.+|+.. ..... .+....+....+.. ..........+.+.+...
T Consensus 1 ~~~avIFD~DGvLvDse~~~~~a~~~~~~~~g~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (221)
T COG0637 1 MIKAVIFDMDGTLVDSEPLHARAWLEALKEYGIEISDEEIREL-HGGGIARIIDLLRKLAAGEDPADLAELERLLYEAEA 79 (221)
T ss_pred CCcEEEEcCCCCcCcchHHHHHHHHHHHHHcCCCCCHHHHHHH-HCCChHHHHHHHHHHhcCCcccCHHHHHHHHHHHHH
Confidence 479999999999999996 3444421 1256542 11111 12222222222211 111111122233333344
Q ss_pred hcCCCCCCchhHHHHHHHHHHCCCcEEEEcCCCC
Q 030531 137 QGLDRLQIMPGTAQLCGFLDSKKIRSSSTVFKVS 170 (175)
Q Consensus 137 ~~~~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~ 170 (175)
...+.+.++||+.++|+.|+++|+++|++||+.+
T Consensus 80 ~~~~~~~~~pGv~~~l~~L~~~~i~~avaS~s~~ 113 (221)
T COG0637 80 LELEGLKPIPGVVELLEQLKARGIPLAVASSSPR 113 (221)
T ss_pred hhhcCCCCCccHHHHHHHHHhcCCcEEEecCChH
Confidence 5567899999999999999999999999999864
No 4
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=99.52 E-value=7.1e-14 Score=114.41 Aligned_cols=112 Identities=13% Similarity=0.065 Sum_probs=63.4
Q ss_pred CCCCCCCcceEEEeccccCccChhh-HHHHH--HHHcCC----hh-HH--HhhccCCCHHHHHHHHhcCChHHHHHHHHH
Q 030531 61 PPKPKTRLRGVVFDMDGTLTVPVID-FPAMY--RAVLGE----DE-YK--RVKAENPTGIDILHHIESWSPDLQRHAYQT 130 (175)
Q Consensus 61 ~~~~~~~ikaVIFDmDGTLvDSe~~-~~a~~--~~~~g~----~~-~~--~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~ 130 (175)
......++|+|||||||||+||+.. ..++. .+.+|. +. .. .....|....+++..+.....+...+..+.
T Consensus 15 ~~~~~~~~k~viFDlDGTLiDs~~~~~~a~~~~~~~~g~~~g~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 94 (248)
T PLN02770 15 SLSGLAPLEAVLFDVDGTLCDSDPLHYYAFREMLQEINFNGGVPITEEFFVENIAGKHNEDIALGLFPDDLERGLKFTDD 94 (248)
T ss_pred cccccCccCEEEEcCCCccCcCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHcCCCCHHHHHHHHcCcchhhHHHHHHH
Confidence 3445566899999999999999963 33331 112332 11 11 111123333444333322111111111122
Q ss_pred HHHH-HHhcCCCCCCchhHHHHHHHHHHCCCcEEEEcCCCCCC
Q 030531 131 IADF-ERQGLDRLQIMPGTAQLCGFLDSKKIRSSSTVFKVSFF 172 (175)
Q Consensus 131 ~~~~-~~~~~~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f 172 (175)
+.++ .......+.++||+.++|+.|+++|+++||+||+.+..
T Consensus 95 ~~~~y~~~~~~~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~ 137 (248)
T PLN02770 95 KEALFRKLASEQLKPLNGLYKLKKWIEDRGLKRAAVTNAPREN 137 (248)
T ss_pred HHHHHHHHHHhcCCcCccHHHHHHHHHHcCCeEEEEeCCCHHH
Confidence 2222 22223468899999999999999999999999997654
No 5
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.50 E-value=6.9e-14 Score=111.35 Aligned_cols=103 Identities=13% Similarity=0.086 Sum_probs=61.3
Q ss_pred CcceEEEeccccCccChhh-HHHHH--HHHcCChh---HHHhhccCCCHHHHHHHHhcCChHHHHHHHHHHHHHH-HhcC
Q 030531 67 RLRGVVFDMDGTLTVPVID-FPAMY--RAVLGEDE---YKRVKAENPTGIDILHHIESWSPDLQRHAYQTIADFE-RQGL 139 (175)
Q Consensus 67 ~ikaVIFDmDGTLvDSe~~-~~a~~--~~~~g~~~---~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~-~~~~ 139 (175)
++|+|||||||||+||+.. ..++. .+.++... .......|.+..+.+.. +.+...+...+.+.++. ....
T Consensus 2 ~~~~viFD~DGTL~ds~~~~~~a~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 78 (214)
T PRK13288 2 KINTVLFDLDGTLINTNELIISSFLHTLKTYYPNQYKREDVLPFIGPSLHDTFSK---IDESKVEEMITTYREFNHEHHD 78 (214)
T ss_pred CccEEEEeCCCcCccCHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCcCHHHHHHh---cCHHHHHHHHHHHHHHHHHhhh
Confidence 5899999999999999953 33331 11233211 10111123333333332 22322333333333322 2233
Q ss_pred CCCCCchhHHHHHHHHHHCCCcEEEEcCCCCCC
Q 030531 140 DRLQIMPGTAQLCGFLDSKKIRSSSTVFKVSFF 172 (175)
Q Consensus 140 ~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f 172 (175)
..+.++||+.++|+.|+++|++++|+||+....
T Consensus 79 ~~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~ 111 (214)
T PRK13288 79 ELVTEYETVYETLKTLKKQGYKLGIVTTKMRDT 111 (214)
T ss_pred hhcccCcCHHHHHHHHHHCCCeEEEEeCCCHHH
Confidence 567899999999999999999999999997643
No 6
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.49 E-value=3e-13 Score=107.81 Aligned_cols=104 Identities=16% Similarity=0.083 Sum_probs=63.0
Q ss_pred cceEEEeccccCccChhh-HHHHHHH---HcCChh--HHHhh-ccCCCHHHHHHHHh---cCChHHHHHHHHHHHH-HHH
Q 030531 68 LRGVVFDMDGTLTVPVID-FPAMYRA---VLGEDE--YKRVK-AENPTGIDILHHIE---SWSPDLQRHAYQTIAD-FER 136 (175)
Q Consensus 68 ikaVIFDmDGTLvDSe~~-~~a~~~~---~~g~~~--~~~~~-~~~~~~~~i~~~i~---~l~~~~~~~~~~~~~~-~~~ 136 (175)
+|+|||||||||+||... ..++ ++ .+|... ..... ..+....++++.+. ..+....++..+.+.+ +..
T Consensus 1 ~k~iiFD~DGTL~ds~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (220)
T TIGR03351 1 ISLVVLDMAGTTVDEDGLVYRAL-RQAVTAAGLSPTPEEVQSAWMGQSKIEAIRALLALDGADEAEAQAAFADFEERLAE 79 (220)
T ss_pred CcEEEEecCCCeeccCchHHHHH-HHHHHHcCCCCCHHHHHHhhcCCCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 589999999999999963 3333 22 245532 11111 13444455555443 2222222323232222 222
Q ss_pred hc-CCCCCCchhHHHHHHHHHHCCCcEEEEcCCCCCC
Q 030531 137 QG-LDRLQIMPGTAQLCGFLDSKKIRSSSTVFKVSFF 172 (175)
Q Consensus 137 ~~-~~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f 172 (175)
.. .....++||+.++|+.|+++|++++|+||+...+
T Consensus 80 ~~~~~~~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~ 116 (220)
T TIGR03351 80 AYDDGPPVALPGAEEAFRSLRSSGIKVALTTGFDRDT 116 (220)
T ss_pred HhcccCCccCCCHHHHHHHHHHCCCEEEEEeCCchHH
Confidence 22 2357899999999999999999999999998754
No 7
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=99.48 E-value=1.7e-13 Score=110.75 Aligned_cols=109 Identities=16% Similarity=0.127 Sum_probs=63.1
Q ss_pred CCCCcceEEEeccccCccChhh-HHHHH--HHHcCChhHH--H-hhccCCCHHHHHHHHh-cCChHHHHHHHHHHHH-HH
Q 030531 64 PKTRLRGVVFDMDGTLTVPVID-FPAMY--RAVLGEDEYK--R-VKAENPTGIDILHHIE-SWSPDLQRHAYQTIAD-FE 135 (175)
Q Consensus 64 ~~~~ikaVIFDmDGTLvDSe~~-~~a~~--~~~~g~~~~~--~-~~~~~~~~~~i~~~i~-~l~~~~~~~~~~~~~~-~~ 135 (175)
+..++|+|||||||||+||... ..++. .+.+|..... . ....+......+.... .......++..+.+.+ +.
T Consensus 8 ~~~~~k~viFD~DGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (229)
T PRK13226 8 AVRFPRAVLFDLDGTLLDSAPDMLATVNAMLAARGRAPITLAQLRPVVSKGARAMLAVAFPELDAAARDALIPEFLQRYE 87 (229)
T ss_pred ccccCCEEEEcCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhhhHHHHHHHHHhccCChHHHHHHHHHHHHHHH
Confidence 4567899999999999999964 33331 1224543211 0 0011222222222221 2222222232222222 22
Q ss_pred HhcCCCCCCchhHHHHHHHHHHCCCcEEEEcCCCCCC
Q 030531 136 RQGLDRLQIMPGTAQLCGFLDSKKIRSSSTVFKVSFF 172 (175)
Q Consensus 136 ~~~~~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f 172 (175)
........++||+.++|+.|+++|++++|+||++..+
T Consensus 88 ~~~~~~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~ 124 (229)
T PRK13226 88 ALIGTQSQLFDGVEGMLQRLECAGCVWGIVTNKPEYL 124 (229)
T ss_pred HhhhhcCeeCCCHHHHHHHHHHCCCeEEEECCCCHHH
Confidence 3334567899999999999999999999999987653
No 8
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=99.48 E-value=2.8e-13 Score=112.12 Aligned_cols=107 Identities=13% Similarity=0.096 Sum_probs=65.2
Q ss_pred CCcceEEEeccccCccCh-hhH-HHHH--HHHcCChh-H--HHhhccCCCHHHHHHHHhcC--ChHHHHHHHHHHHHHHH
Q 030531 66 TRLRGVVFDMDGTLTVPV-IDF-PAMY--RAVLGEDE-Y--KRVKAENPTGIDILHHIESW--SPDLQRHAYQTIADFER 136 (175)
Q Consensus 66 ~~ikaVIFDmDGTLvDSe-~~~-~a~~--~~~~g~~~-~--~~~~~~~~~~~~i~~~i~~l--~~~~~~~~~~~~~~~~~ 136 (175)
..+|+|||||||||+||+ ..+ .++. ...+|+.. . ......|....+++..+..+ +.+..++..+.+.+++.
T Consensus 22 ~~~k~vIFDlDGTLvDS~~~~~~~a~~~~~~~~G~~~~~~e~~~~~~G~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~ 101 (260)
T PLN03243 22 CGWLGVVLEWEGVIVEDDSELERKAWRALAEEEGKRPPPAFLLKRAEGMKNEQAISEVLCWSRDFLQMKRLAIRKEDLYE 101 (260)
T ss_pred CCceEEEEeCCCceeCCchHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 468999999999999996 332 2331 12356542 1 11112455555555554432 22222223333333222
Q ss_pred -hcCCCCCCchhHHHHHHHHHHCCCcEEEEcCCCCCC
Q 030531 137 -QGLDRLQIMPGTAQLCGFLDSKKIRSSSTVFKVSFF 172 (175)
Q Consensus 137 -~~~~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f 172 (175)
.......++||+.++|+.|+++|++++|+||++...
T Consensus 102 ~~~~~~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~ 138 (260)
T PLN03243 102 YMQGGLYRLRPGSREFVQALKKHEIPIAVASTRPRRY 138 (260)
T ss_pred HHHccCcccCCCHHHHHHHHHHCCCEEEEEeCcCHHH
Confidence 123457899999999999999999999999998654
No 9
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=99.47 E-value=3.2e-13 Score=108.67 Aligned_cols=108 Identities=17% Similarity=0.172 Sum_probs=62.0
Q ss_pred CCcceEEEeccccCccChhh-HHHHH--HHHcCChh--HH-HhhccCCCHHHHHHHHhcCCh-HHHHHHHHHHH-HHHHh
Q 030531 66 TRLRGVVFDMDGTLTVPVID-FPAMY--RAVLGEDE--YK-RVKAENPTGIDILHHIESWSP-DLQRHAYQTIA-DFERQ 137 (175)
Q Consensus 66 ~~ikaVIFDmDGTLvDSe~~-~~a~~--~~~~g~~~--~~-~~~~~~~~~~~i~~~i~~l~~-~~~~~~~~~~~-~~~~~ 137 (175)
+++++||||+||||+||... ..++. .+.+|.+. .. .....+.....+......... ....+..+.+. .+...
T Consensus 2 ~~~~~iiFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (220)
T COG0546 2 MMIKAILFDLDGTLVDSAEDILRAFNAALAELGLPPLDEEEIRQLIGLGLDELIERLLGEADEEAAAELVERLREEFLTA 81 (220)
T ss_pred CCCCEEEEeCCCccccChHHHHHHHHHHHHHcCCCCCCHHHHHHHhcCCHHHHHHHHhccccchhHHHHHHHHHHHHHHH
Confidence 46899999999999999964 22221 22356542 11 111123333333332222111 11111222222 22222
Q ss_pred cCC--CCCCchhHHHHHHHHHHCCCcEEEEcCCCCCCc
Q 030531 138 GLD--RLQIMPGTAQLCGFLDSKKIRSSSTVFKVSFFR 173 (175)
Q Consensus 138 ~~~--~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f~ 173 (175)
+.+ ...++||+.++|+.|+++|+++||+|||++.++
T Consensus 82 ~~~~~~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~ 119 (220)
T COG0546 82 YAELLESRLFPGVKELLAALKSAGYKLGIVTNKPEREL 119 (220)
T ss_pred HHhhccCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHH
Confidence 222 368999999999999999999999999988765
No 10
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.44 E-value=2.1e-12 Score=99.88 Aligned_cols=100 Identities=21% Similarity=0.220 Sum_probs=60.6
Q ss_pred cceEEEeccccCccChhh-HHHHH--HHHcCChh---HHHhhccCCCHHHHHHHHh-----cCChHHHHHHHHHHHHHHH
Q 030531 68 LRGVVFDMDGTLTVPVID-FPAMY--RAVLGEDE---YKRVKAENPTGIDILHHIE-----SWSPDLQRHAYQTIADFER 136 (175)
Q Consensus 68 ikaVIFDmDGTLvDSe~~-~~a~~--~~~~g~~~---~~~~~~~~~~~~~i~~~i~-----~l~~~~~~~~~~~~~~~~~ 136 (175)
+|+|||||||||+||+.. ..++. .+.+|.+. +... ..+....+.+..+. .++++..+...+.+.+++.
T Consensus 1 ~~~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (185)
T TIGR02009 1 YKAVIFDMDGVIVDTAPLHAQAWKHLADKYGIEFDKQYNTS-LGGLSREDILRAILKLRKPGLSLETIHQLAERKNELYR 79 (185)
T ss_pred CCeEEEcCCCcccCChHHHHHHHHHHHHHcCCCCCHHHHHH-cCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 589999999999999853 22221 12345431 1111 12344444444332 2333333333333333333
Q ss_pred hc--CCCCCCchhHHHHHHHHHHCCCcEEEEcCC
Q 030531 137 QG--LDRLQIMPGTAQLCGFLDSKKIRSSSTVFK 168 (175)
Q Consensus 137 ~~--~~~~~l~PG~~e~L~~Lk~~gi~laIaTs~ 168 (175)
.. .....++||+.++|+.|+++|++++|+||+
T Consensus 80 ~~~~~~~~~~~~g~~~~l~~l~~~g~~i~i~S~~ 113 (185)
T TIGR02009 80 ELLRLTGAEVLPGIENFLKRLKKKGIAVGLGSSS 113 (185)
T ss_pred HHHhccCCCCCcCHHHHHHHHHHcCCeEEEEeCc
Confidence 22 346889999999999999999999999987
No 11
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.43 E-value=1.7e-12 Score=107.86 Aligned_cols=107 Identities=18% Similarity=0.161 Sum_probs=63.9
Q ss_pred CCCcceEEEeccccCccChhhHHHHHH---HHcCChh--HH-HhhccCCCHHHHHHHHh-------cCChHHHHHHHHHH
Q 030531 65 KTRLRGVVFDMDGTLTVPVIDFPAMYR---AVLGEDE--YK-RVKAENPTGIDILHHIE-------SWSPDLQRHAYQTI 131 (175)
Q Consensus 65 ~~~ikaVIFDmDGTLvDSe~~~~a~~~---~~~g~~~--~~-~~~~~~~~~~~i~~~i~-------~l~~~~~~~~~~~~ 131 (175)
-+.+|+|||||||||+||+..+...+. ..+|... .. .....+....++...+. ..++...++..+.+
T Consensus 10 ~~~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 89 (272)
T PRK13223 10 GRLPRLVMFDLDGTLVDSVPDLAAAVDRMLLELGRPPAGLEAVRHWVGNGAPVLVRRALAGSIDHDGVDDELAEQALALF 89 (272)
T ss_pred CccCCEEEEcCCCccccCHHHHHHHHHHHHHHcCCCCCCHHHHHHHhChhHHHHHHHHhcccccccCCCHHHHHHHHHHH
Confidence 456899999999999999964222212 2345432 11 01112333333333221 12222233334444
Q ss_pred HHHHHhcCCCCCCchhHHHHHHHHHHCCCcEEEEcCCCCC
Q 030531 132 ADFERQGLDRLQIMPGTAQLCGFLDSKKIRSSSTVFKVSF 171 (175)
Q Consensus 132 ~~~~~~~~~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~ 171 (175)
.+.+........++||+.++|+.|+++|++++|+||++..
T Consensus 90 ~~~~~~~~~~~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~ 129 (272)
T PRK13223 90 MEAYADSHELTVVYPGVRDTLKWLKKQGVEMALITNKPER 129 (272)
T ss_pred HHHHHhcCcCCccCCCHHHHHHHHHHCCCeEEEEECCcHH
Confidence 4433333345789999999999999999999999998764
No 12
>PLN02940 riboflavin kinase
Probab=99.43 E-value=1.3e-12 Score=113.67 Aligned_cols=109 Identities=15% Similarity=0.096 Sum_probs=63.9
Q ss_pred CCCCCcceEEEeccccCccChhh-HHHHH--HHHcCChh--HHHhhccCCCHHHHHHHHhc---CChHHHHHHHHHHHHH
Q 030531 63 KPKTRLRGVVFDMDGTLTVPVID-FPAMY--RAVLGEDE--YKRVKAENPTGIDILHHIES---WSPDLQRHAYQTIADF 134 (175)
Q Consensus 63 ~~~~~ikaVIFDmDGTLvDSe~~-~~a~~--~~~~g~~~--~~~~~~~~~~~~~i~~~i~~---l~~~~~~~~~~~~~~~ 134 (175)
+....+|+|||||||||+||+.. ..++. .+.+|... .......+....+++..+.. .+.. .++..+.+.+.
T Consensus 6 ~~~~~ik~VIFDlDGTLvDt~~~~~~a~~~~~~~~G~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 84 (382)
T PLN02940 6 PLKKLVSHVILDLDGTLLNTDGIVSDVLKAFLVKYGKQWDGREAQKIVGKTPLEAAATVVEDYGLPCS-TDEFNSEITPL 84 (382)
T ss_pred cccccCCEEEECCcCcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHHHHhCCCCC-HHHHHHHHHHH
Confidence 34556999999999999999964 33331 12245431 11111134444444333221 1111 12222222222
Q ss_pred HHhcCCCCCCchhHHHHHHHHHHCCCcEEEEcCCCCCC
Q 030531 135 ERQGLDRLQIMPGTAQLCGFLDSKKIRSSSTVFKVSFF 172 (175)
Q Consensus 135 ~~~~~~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f 172 (175)
.......+.++||+.++|+.|+++|+++||+||+++..
T Consensus 85 ~~~~~~~~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~ 122 (382)
T PLN02940 85 LSEQWCNIKALPGANRLIKHLKSHGVPMALASNSPRAN 122 (382)
T ss_pred HHHHHccCCCCcCHHHHHHHHHHCCCcEEEEeCCcHHH
Confidence 22223567899999999999999999999999987653
No 13
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.42 E-value=1.9e-12 Score=103.65 Aligned_cols=106 Identities=16% Similarity=0.161 Sum_probs=61.0
Q ss_pred CcceEEEeccccCccChhhHHHHHH---HHcCChh-H-H-HhhccCCCHHHHHHHHh---cCC-hHHHHHHHHHHHHHHH
Q 030531 67 RLRGVVFDMDGTLTVPVIDFPAMYR---AVLGEDE-Y-K-RVKAENPTGIDILHHIE---SWS-PDLQRHAYQTIADFER 136 (175)
Q Consensus 67 ~ikaVIFDmDGTLvDSe~~~~a~~~---~~~g~~~-~-~-~~~~~~~~~~~i~~~i~---~l~-~~~~~~~~~~~~~~~~ 136 (175)
++|+|||||||||+|+...+...+. ..+|... . . .....+.....+.+.+. .+. +...+...+..+.+..
T Consensus 6 ~~k~iiFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (222)
T PRK10826 6 QILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRREELPDTLGLRIDQVVDLWYARQPWNGPSRQEVVQRIIARVIS 85 (222)
T ss_pred cCcEEEEcCCCCCCcCHHHHHHHHHHHHHHCCCCCCHHHHHHHhhCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999864322212 2245431 1 0 00112222222322221 121 1111212222333333
Q ss_pred hcCCCCCCchhHHHHHHHHHHCCCcEEEEcCCCCCC
Q 030531 137 QGLDRLQIMPGTAQLCGFLDSKKIRSSSTVFKVSFF 172 (175)
Q Consensus 137 ~~~~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f 172 (175)
.......++||+.++|+.|+++|++++|+||+....
T Consensus 86 ~~~~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~ 121 (222)
T PRK10826 86 LIEETRPLLPGVREALALCKAQGLKIGLASASPLHM 121 (222)
T ss_pred HHhcCCCCCCCHHHHHHHHHHCCCeEEEEeCCcHHH
Confidence 334568899999999999999999999999987654
No 14
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.40 E-value=2.8e-12 Score=111.38 Aligned_cols=106 Identities=12% Similarity=0.103 Sum_probs=66.1
Q ss_pred CcceEEEeccccCccChh-hH-HHHH--HHHcCChh-H--HHhhccCCCHHHHHHHHhcC--ChHHHHHHHHHHHHHHH-
Q 030531 67 RLRGVVFDMDGTLTVPVI-DF-PAMY--RAVLGEDE-Y--KRVKAENPTGIDILHHIESW--SPDLQRHAYQTIADFER- 136 (175)
Q Consensus 67 ~ikaVIFDmDGTLvDSe~-~~-~a~~--~~~~g~~~-~--~~~~~~~~~~~~i~~~i~~l--~~~~~~~~~~~~~~~~~- 136 (175)
..++|||||||||+||.. .+ ..+. ...+|... . ......|.+..+++..+..+ ++...++..+.+.+++.
T Consensus 130 ~~~~VIFDlDGTLIDS~~~i~~~a~~~l~~e~G~~~~~~e~~~~~~G~~~~~~l~~ll~~~~~~~~~e~l~~~~~~~y~~ 209 (381)
T PLN02575 130 GWLGAIFEWEGVIIEDNPDLENQAWLTLAQEEGKSPPPAFILRRVEGMKNEQAISEVLCWSRDPAELRRMATRKEEIYQA 209 (381)
T ss_pred CCCEEEEcCcCcceeCHHHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCHHHHHHHHhhccCCHHHHHHHHHHHHHHHHH
Confidence 479999999999999985 33 2332 12346542 1 11122455555555554332 23223333333333332
Q ss_pred hcCCCCCCchhHHHHHHHHHHCCCcEEEEcCCCCCC
Q 030531 137 QGLDRLQIMPGTAQLCGFLDSKKIRSSSTVFKVSFF 172 (175)
Q Consensus 137 ~~~~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f 172 (175)
.......++||+.|+|+.|+++|+++||+||+....
T Consensus 210 ~~~~~~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~ 245 (381)
T PLN02575 210 LQGGIYRLRTGSQEFVNVLMNYKIPMALVSTRPRKT 245 (381)
T ss_pred HhccCCCcCcCHHHHHHHHHHCCCeEEEEeCCCHHH
Confidence 233567899999999999999999999999987643
No 15
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.40 E-value=2.9e-12 Score=105.73 Aligned_cols=35 Identities=20% Similarity=0.156 Sum_probs=30.7
Q ss_pred cCCCCCCchhHHHHHHHHHHCCCcEEEEcCCCCCC
Q 030531 138 GLDRLQIMPGTAQLCGFLDSKKIRSSSTVFKVSFF 172 (175)
Q Consensus 138 ~~~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f 172 (175)
....+.++||+.++|+.|+++|+++||+||+++..
T Consensus 96 ~~~~~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~ 130 (267)
T PRK13478 96 LADYATPIPGVLEVIAALRARGIKIGSTTGYTREM 130 (267)
T ss_pred HhhcCCCCCCHHHHHHHHHHCCCEEEEEcCCcHHH
Confidence 34567899999999999999999999999987643
No 16
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=99.39 E-value=3.5e-12 Score=104.16 Aligned_cols=34 Identities=18% Similarity=0.195 Sum_probs=30.2
Q ss_pred cCCCCCCchhHHHHHHHHHHCCCcEEEEcCCCCC
Q 030531 138 GLDRLQIMPGTAQLCGFLDSKKIRSSSTVFKVSF 171 (175)
Q Consensus 138 ~~~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~ 171 (175)
......++||+.++|+.|+++|+++||+||++..
T Consensus 94 ~~~~~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~ 127 (253)
T TIGR01422 94 LAEYSSPIPGVIEVIAYLRARGIKIGSTTGYTRE 127 (253)
T ss_pred HHhcCccCCCHHHHHHHHHHCCCeEEEECCCcHH
Confidence 3456889999999999999999999999998754
No 17
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.38 E-value=9.2e-13 Score=116.74 Aligned_cols=111 Identities=9% Similarity=0.082 Sum_probs=63.5
Q ss_pred CCCCCcceEEEeccccCccChhh-HHHH---HHHHc-----CCh-hHH-HhhccCCCHHHHHHHHhc-CChHHHHHHHHH
Q 030531 63 KPKTRLRGVVFDMDGTLTVPVID-FPAM---YRAVL-----GED-EYK-RVKAENPTGIDILHHIES-WSPDLQRHAYQT 130 (175)
Q Consensus 63 ~~~~~ikaVIFDmDGTLvDSe~~-~~a~---~~~~~-----g~~-~~~-~~~~~~~~~~~i~~~i~~-l~~~~~~~~~~~ 130 (175)
++.+|+++|||||||||+||+.. ..++ .++.. +.. ... .....|.+..++++.+.. ...+..++..+.
T Consensus 236 ~~~~m~k~vIFDlDGTLiDs~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~~~ 315 (459)
T PRK06698 236 GENEMLQALIFDMDGTLFQTDKILELSLDDTFDHLRSLQLWDTVTPIDKYREIMGVPLPKVWEALLPDHSLEIREQTDAY 315 (459)
T ss_pred chHHhhhheeEccCCceecchhHHHHHHHHHHHHHhhhcccCCCCCHHHHHHHcCCChHHHHHHHhhhcchhHHHHHHHH
Confidence 34567899999999999999963 3333 12211 010 000 111134444444444322 111112222222
Q ss_pred HHHHH-Hh-cCCCCCCchhHHHHHHHHHHCCCcEEEEcCCCCCCc
Q 030531 131 IADFE-RQ-GLDRLQIMPGTAQLCGFLDSKKIRSSSTVFKVSFFR 173 (175)
Q Consensus 131 ~~~~~-~~-~~~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f~ 173 (175)
+.+.. .. .....+++||+.|+|+.|+++|+++||+||++..+.
T Consensus 316 ~~~~~~~~~~~~~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~ 360 (459)
T PRK06698 316 FLERLIENIKSGKGALYPNVKEIFTYIKENNCSIYIASNGLTEYL 360 (459)
T ss_pred HHHHhHHHHhhcCCCcCCCHHHHHHHHHHCCCeEEEEeCCchHHH
Confidence 22221 11 234678999999999999999999999999987653
No 18
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.37 E-value=3.4e-12 Score=100.88 Aligned_cols=101 Identities=19% Similarity=0.183 Sum_probs=58.3
Q ss_pred EEEeccccCccChhh-HHHHHHH---HcCChh--HH-HhhccCCCHHHHHHHHhc-----CChHHHHHHHHHHHHH-HHh
Q 030531 71 VVFDMDGTLTVPVID-FPAMYRA---VLGEDE--YK-RVKAENPTGIDILHHIES-----WSPDLQRHAYQTIADF-ERQ 137 (175)
Q Consensus 71 VIFDmDGTLvDSe~~-~~a~~~~---~~g~~~--~~-~~~~~~~~~~~i~~~i~~-----l~~~~~~~~~~~~~~~-~~~ 137 (175)
|||||||||+||+.. ..++ +. .+|... .. .....+....++++.+.. .+.+..++..+.+.+. ...
T Consensus 1 viFD~DGTL~Ds~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (213)
T TIGR01449 1 VLFDLDGTLVDSAPDIAAAV-NMALAALGLPPATLARVIGFIGNGVPVLMERVLAWAGQEPDAQRVAELRKLFDRHYEEV 79 (213)
T ss_pred CeecCCCccccCHHHHHHHH-HHHHHHCCCCCCCHHHHHHHhcccHHHHHHHHhhccccccChHHHHHHHHHHHHHHHHh
Confidence 699999999999963 3333 22 245531 11 011123333333333321 1111122223333332 223
Q ss_pred cCCCCCCchhHHHHHHHHHHCCCcEEEEcCCCCCC
Q 030531 138 GLDRLQIMPGTAQLCGFLDSKKIRSSSTVFKVSFF 172 (175)
Q Consensus 138 ~~~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f 172 (175)
..+...++||+.++|+.|+++|++++|+||+.+..
T Consensus 80 ~~~~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~ 114 (213)
T TIGR01449 80 AGELTSVFPGVEATLGALRAKGLRLGLVTNKPTPL 114 (213)
T ss_pred ccccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHH
Confidence 34467899999999999999999999999987643
No 19
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.36 E-value=6.9e-12 Score=96.95 Aligned_cols=100 Identities=20% Similarity=0.225 Sum_probs=56.3
Q ss_pred eEEEeccccCccChhh-HHHHH--HHHcCChh--HHHhhccCCCHHHHHHHHhc-----CChHHHHHHHHHHHHHHH---
Q 030531 70 GVVFDMDGTLTVPVID-FPAMY--RAVLGEDE--YKRVKAENPTGIDILHHIES-----WSPDLQRHAYQTIADFER--- 136 (175)
Q Consensus 70 aVIFDmDGTLvDSe~~-~~a~~--~~~~g~~~--~~~~~~~~~~~~~i~~~i~~-----l~~~~~~~~~~~~~~~~~--- 136 (175)
+|||||||||+||... ..++. .+.+|.+. .......+....+.+..+.. .+++..++..+.+.+.+.
T Consensus 1 ~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR01990 1 AVIFDLDGVITDTAEYHYLAWKALADELGIPFDEEFNESLKGVSREDSLERILDLGGKKYSEEEKEELAERKNDYYVELL 80 (185)
T ss_pred CeEEcCCCccccChHHHHHHHHHHHHHcCCCCCHHHHHHhcCCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999963 23321 22356542 11111123334444443321 222222222222222111
Q ss_pred hcCCCCCCchhHHHHHHHHHHCCCcEEEEcCCC
Q 030531 137 QGLDRLQIMPGTAQLCGFLDSKKIRSSSTVFKV 169 (175)
Q Consensus 137 ~~~~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~ 169 (175)
.......++||+.++|+.|+++|++++|+||+.
T Consensus 81 ~~~~~~~~~pg~~~~L~~L~~~g~~~~i~s~~~ 113 (185)
T TIGR01990 81 KELTPADVLPGIKNLLDDLKKNNIKIALASASK 113 (185)
T ss_pred HhcCCcccCccHHHHHHHHHHCCCeEEEEeCCc
Confidence 112346799999999999999999999999763
No 20
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=99.34 E-value=5.6e-12 Score=105.56 Aligned_cols=31 Identities=16% Similarity=0.103 Sum_probs=28.3
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEcCCCCC
Q 030531 141 RLQIMPGTAQLCGFLDSKKIRSSSTVFKVSF 171 (175)
Q Consensus 141 ~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~ 171 (175)
.+.++||+.++|+.|+++|++++|+||++..
T Consensus 142 ~~~l~pGv~elL~~L~~~g~~l~IvTn~~~~ 172 (286)
T PLN02779 142 ALPLRPGVLRLMDEALAAGIKVAVCSTSNEK 172 (286)
T ss_pred CCCchhhHHHHHHHHHHCCCeEEEEeCCCHH
Confidence 3689999999999999999999999998764
No 21
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.33 E-value=4.6e-12 Score=102.38 Aligned_cols=34 Identities=12% Similarity=-0.086 Sum_probs=30.2
Q ss_pred CCCCCCchhHHHHHHHHHHCCCcEEEEcCCCCCC
Q 030531 139 LDRLQIMPGTAQLCGFLDSKKIRSSSTVFKVSFF 172 (175)
Q Consensus 139 ~~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f 172 (175)
...+.++||+.++|+.|+++|++++|+||++...
T Consensus 89 ~~~~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~ 122 (224)
T PRK14988 89 GPRAVLREDTVPFLEALKASGKRRILLTNAHPHN 122 (224)
T ss_pred hccCCcCCCHHHHHHHHHhCCCeEEEEeCcCHHH
Confidence 4568899999999999999999999999987543
No 22
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.32 E-value=3e-12 Score=101.93 Aligned_cols=33 Identities=15% Similarity=0.071 Sum_probs=29.4
Q ss_pred CCCCCchhHHHHHHHHHHCCCcEEEEcCCCCCC
Q 030531 140 DRLQIMPGTAQLCGFLDSKKIRSSSTVFKVSFF 172 (175)
Q Consensus 140 ~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f 172 (175)
..+.++||+.++|+.|+++|++++|+||+....
T Consensus 91 ~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~ 123 (221)
T TIGR02253 91 AYLRVYPGVRDTLMELRESGYRLGIITDGLPVK 123 (221)
T ss_pred HhCCCCCCHHHHHHHHHHCCCEEEEEeCCchHH
Confidence 457899999999999999999999999997643
No 23
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.31 E-value=3e-11 Score=93.88 Aligned_cols=104 Identities=17% Similarity=0.099 Sum_probs=56.4
Q ss_pred CCcceEEEeccccCccChhh-HHHHHHH---HcCChh--HHHhhccCCCHHHHHHHHhc-CC-hHHHHHHHHHHHH-HHH
Q 030531 66 TRLRGVVFDMDGTLTVPVID-FPAMYRA---VLGEDE--YKRVKAENPTGIDILHHIES-WS-PDLQRHAYQTIAD-FER 136 (175)
Q Consensus 66 ~~ikaVIFDmDGTLvDSe~~-~~a~~~~---~~g~~~--~~~~~~~~~~~~~i~~~i~~-l~-~~~~~~~~~~~~~-~~~ 136 (175)
.++++|||||||||+||+.. ..++ .+ .+|.+. .......|....+.+..+.. .. ....++....+.. +..
T Consensus 3 ~~~~~viFD~DGTLiDs~~~~~~a~-~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (188)
T PRK10725 3 DRYAGLIFDMDGTILDTEPTHRKAW-REVLGRYGLQFDEQAMVALNGSPTWRIAQAIIELNQADLDPHALAREKTEAVKS 81 (188)
T ss_pred CcceEEEEcCCCcCccCHHHHHHHH-HHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 34899999999999999963 3333 22 245431 11111133333333333321 10 0001112222212 222
Q ss_pred hcCCCCCCchhHHHHHHHHHHCCCcEEEEcCCCCCC
Q 030531 137 QGLDRLQIMPGTAQLCGFLDSKKIRSSSTVFKVSFF 172 (175)
Q Consensus 137 ~~~~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f 172 (175)
.....+.++|| .++|+.|+++ ++++|+||+.+..
T Consensus 82 ~~~~~~~~~~~-~e~L~~L~~~-~~l~I~T~~~~~~ 115 (188)
T PRK10725 82 MLLDSVEPLPL-IEVVKAWHGR-RPMAVGTGSESAI 115 (188)
T ss_pred HHhccCCCccH-HHHHHHHHhC-CCEEEEcCCchHH
Confidence 22356678897 5999999875 8999999987643
No 24
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.31 E-value=3.2e-11 Score=96.00 Aligned_cols=107 Identities=19% Similarity=0.157 Sum_probs=62.4
Q ss_pred CCcceEEEeccccCccChhh-HHHHH--HHHcCChh--HHH-hhccCCCHHHHHHHHhc-----CChHHHHHHHHHHHHH
Q 030531 66 TRLRGVVFDMDGTLTVPVID-FPAMY--RAVLGEDE--YKR-VKAENPTGIDILHHIES-----WSPDLQRHAYQTIADF 134 (175)
Q Consensus 66 ~~ikaVIFDmDGTLvDSe~~-~~a~~--~~~~g~~~--~~~-~~~~~~~~~~i~~~i~~-----l~~~~~~~~~~~~~~~ 134 (175)
.++++||||+||||+||... ..++. ...+|... ... ....+....+++..... .+.+..++..+.+.++
T Consensus 4 ~~~~~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (226)
T PRK13222 4 MDIRAVAFDLDGTLVDSAPDLAAAVNAALAALGLPPAGEERVRTWVGNGADVLVERALTWAGREPDEELLEKLRELFDRH 83 (226)
T ss_pred CcCcEEEEcCCcccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhCccHHHHHHHHHhhccCCccHHHHHHHHHHHHHH
Confidence 45899999999999999843 22221 12245431 111 11123333343333321 2222233333333332
Q ss_pred H-HhcCCCCCCchhHHHHHHHHHHCCCcEEEEcCCCCCC
Q 030531 135 E-RQGLDRLQIMPGTAQLCGFLDSKKIRSSSTVFKVSFF 172 (175)
Q Consensus 135 ~-~~~~~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f 172 (175)
+ ........++||+.++|+.|++.|++++|+||+....
T Consensus 84 ~~~~~~~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~ 122 (226)
T PRK13222 84 YAENVAGGSRLYPGVKETLAALKAAGYPLAVVTNKPTPF 122 (226)
T ss_pred HHHhccccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHH
Confidence 2 2233467899999999999999999999999987543
No 25
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.30 E-value=2.7e-11 Score=96.10 Aligned_cols=32 Identities=9% Similarity=0.147 Sum_probs=28.6
Q ss_pred CCCCCchhHHHHHHHHHHCCCcEEEEcCCCCC
Q 030531 140 DRLQIMPGTAQLCGFLDSKKIRSSSTVFKVSF 171 (175)
Q Consensus 140 ~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~ 171 (175)
..+.++||+.++|+.|+++|++++|+||+...
T Consensus 91 ~~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~ 122 (211)
T TIGR02247 91 ENTKLRPSMMAAIKTLRAKGFKTACITNNFPT 122 (211)
T ss_pred cccccChhHHHHHHHHHHCCCeEEEEeCCCCc
Confidence 36789999999999999999999999998653
No 26
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.29 E-value=1.4e-11 Score=97.47 Aligned_cols=97 Identities=19% Similarity=0.263 Sum_probs=55.1
Q ss_pred EEEeccccCccChhh-H---HHHHHHHcCChh--HH-HhhccCCCHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCCC
Q 030531 71 VVFDMDGTLTVPVID-F---PAMYRAVLGEDE--YK-RVKAENPTGIDILHHIESWSPDLQRHAYQTIADFERQGLDRLQ 143 (175)
Q Consensus 71 VIFDmDGTLvDSe~~-~---~a~~~~~~g~~~--~~-~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~ 143 (175)
|||||||||+||... . ..+..+..|... .. .....+....++++.+. .+....+ .....+. .....++
T Consensus 1 iiFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~---~~~~~~~-~~~~~~~ 75 (205)
T TIGR01454 1 VVFDLDGVLVDSFAVMREAFAIAYREVVGDGPAPFEEYRRHLGRYFPDIMRIMG-LPLEMEE---PFVRESY-RLAGEVE 75 (205)
T ss_pred CeecCcCccccCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHhCccHHHHHHHcC-CCHHHHH---HHHHHHH-Hhhcccc
Confidence 699999999999964 2 222222234321 10 01112222233333221 2211111 1111121 2345789
Q ss_pred CchhHHHHHHHHHHCCCcEEEEcCCCCCC
Q 030531 144 IMPGTAQLCGFLDSKKIRSSSTVFKVSFF 172 (175)
Q Consensus 144 l~PG~~e~L~~Lk~~gi~laIaTs~~~~f 172 (175)
++||+.++|+.|+++|++++|+||+...+
T Consensus 76 ~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~ 104 (205)
T TIGR01454 76 VFPGVPELLAELRADGVGTAIATGKSGPR 104 (205)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEeCCchHH
Confidence 99999999999999999999999987654
No 27
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.27 E-value=2.9e-12 Score=100.15 Aligned_cols=34 Identities=9% Similarity=0.172 Sum_probs=30.2
Q ss_pred CCCCCchhHHHHHHHHHHCCCcEEEEcCCCCCCc
Q 030531 140 DRLQIMPGTAQLCGFLDSKKIRSSSTVFKVSFFR 173 (175)
Q Consensus 140 ~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f~ 173 (175)
..+.++||+.++|+.|+++|++++|+||+...++
T Consensus 77 ~~~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~ 110 (201)
T TIGR01491 77 KEISLRDYAEELVRWLKEKGLKTAIVSGGIMCLA 110 (201)
T ss_pred HhCCCCccHHHHHHHHHHCCCEEEEEeCCcHHHH
Confidence 4568999999999999999999999999987654
No 28
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.27 E-value=1.2e-11 Score=97.16 Aligned_cols=98 Identities=10% Similarity=0.028 Sum_probs=54.3
Q ss_pred CcceEEEeccccCccChhhHHHHHHHHcCChh--HHHhhccCCCHHHHHHHHhcCChHHHHHHHHHHHHHH-HhcCCCCC
Q 030531 67 RLRGVVFDMDGTLTVPVIDFPAMYRAVLGEDE--YKRVKAENPTGIDILHHIESWSPDLQRHAYQTIADFE-RQGLDRLQ 143 (175)
Q Consensus 67 ~ikaVIFDmDGTLvDSe~~~~a~~~~~~g~~~--~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~-~~~~~~~~ 143 (175)
|+|+|||||||||+|+...+..+.+ .+|++. +... .+.............+++. ..+.++.+. ........
T Consensus 1 m~k~viFDlDGTLiD~~~~~~~~~~-~~g~~~~~~~~~--~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 74 (197)
T PHA02597 1 MKPTILTDVDGVLLSWQSGLPYFAQ-KYNIPTDHILKM--IQDERFRDPGELFGCDQEL---AKKLIEKYNNSDFIRYLS 74 (197)
T ss_pred CCcEEEEecCCceEchhhccHHHHH-hcCCCHHHHHHH--HhHhhhcCHHHHhcccHHH---HHHHhhhhhHHHHHHhcc
Confidence 5799999999999997754554533 356542 1111 1111001111111112211 222222222 22335577
Q ss_pred CchhHHHHHHHHHHCCCcEEEEcCCCCC
Q 030531 144 IMPGTAQLCGFLDSKKIRSSSTVFKVSF 171 (175)
Q Consensus 144 l~PG~~e~L~~Lk~~gi~laIaTs~~~~ 171 (175)
++||+.|+|+.|+++ ++++++||++..
T Consensus 75 ~~pG~~e~L~~L~~~-~~~~i~Tn~~~~ 101 (197)
T PHA02597 75 AYDDALDVINKLKED-YDFVAVTALGDS 101 (197)
T ss_pred CCCCHHHHHHHHHhc-CCEEEEeCCccc
Confidence 999999999999987 578888876643
No 29
>PLN02954 phosphoserine phosphatase
Probab=99.27 E-value=2e-11 Score=97.52 Aligned_cols=100 Identities=15% Similarity=0.157 Sum_probs=57.8
Q ss_pred CCCcceEEEeccccCccChhhHHHHHHHHcCChh----HHHh-hccCCCHHHHHHH-HhcCChHHHHHHHHHHHHHHHhc
Q 030531 65 KTRLRGVVFDMDGTLTVPVIDFPAMYRAVLGEDE----YKRV-KAENPTGIDILHH-IESWSPDLQRHAYQTIADFERQG 138 (175)
Q Consensus 65 ~~~ikaVIFDmDGTLvDSe~~~~a~~~~~~g~~~----~~~~-~~~~~~~~~i~~~-i~~l~~~~~~~~~~~~~~~~~~~ 138 (175)
.+.+|+|||||||||+|++.. ..+ .+.+|... .... ..+..+..+.+.. +..+... .+ .+.++...
T Consensus 9 ~~~~k~viFDfDGTL~~~~~~-~~~-~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~- 80 (224)
T PLN02954 9 WRSADAVCFDVDSTVCVDEGI-DEL-AEFCGAGEAVAEWTAKAMGGSVPFEEALAARLSLFKPS-LS----QVEEFLEK- 80 (224)
T ss_pred HccCCEEEEeCCCcccchHHH-HHH-HHHcCChHHHHHHHHHHHCCCCCHHHHHHHHHHHcCCC-HH----HHHHHHHH-
Confidence 356899999999999999743 222 22345532 1111 1111222222222 2222111 11 12222211
Q ss_pred CCCCCCchhHHHHHHHHHHCCCcEEEEcCCCCCCc
Q 030531 139 LDRLQIMPGTAQLCGFLDSKKIRSSSTVFKVSFFR 173 (175)
Q Consensus 139 ~~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f~ 173 (175)
....++||+.++|+.|+++|++++|+||+.+.++
T Consensus 81 -~~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i 114 (224)
T PLN02954 81 -RPPRLSPGIPELVKKLRARGTDVYLVSGGFRQMI 114 (224)
T ss_pred -ccCCCCccHHHHHHHHHHCCCEEEEECCCcHHHH
Confidence 2356899999999999999999999999987654
No 30
>PRK11590 hypothetical protein; Provisional
Probab=99.21 E-value=6.8e-11 Score=94.60 Aligned_cols=104 Identities=14% Similarity=-0.014 Sum_probs=57.6
Q ss_pred CcceEEEeccccCccChhh--HHHHHHHHcCChhH--HHh-hccCCCHHHHHHH------------HhcCChHHHHHHHH
Q 030531 67 RLRGVVFDMDGTLTVPVID--FPAMYRAVLGEDEY--KRV-KAENPTGIDILHH------------IESWSPDLQRHAYQ 129 (175)
Q Consensus 67 ~ikaVIFDmDGTLvDSe~~--~~a~~~~~~g~~~~--~~~-~~~~~~~~~i~~~------------i~~l~~~~~~~~~~ 129 (175)
..|++|||+||||++.... +..+....+|.... ... ...+......... ....+.++.++..+
T Consensus 5 ~~k~~iFD~DGTL~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 84 (211)
T PRK11590 5 ERRVVFFDLDGTLHQQDMFGSFLRYLLRRQPLNLLLVLPLLPVIGLGLLVKGRAARWPMSLLLWGCTFGHSEARLQALEA 84 (211)
T ss_pred cceEEEEecCCCCcccchHHHHHHHHHHhcchhhHHHhHHHHHhccCcccchhhhhhhHHHHHHHHHcCCCHHHHHHHHH
Confidence 4679999999999966642 44442123454321 110 0011111111000 11233333333333
Q ss_pred HHHHHHHhcCCCCCCchhHHHHH-HHHHHCCCcEEEEcCCCCCCc
Q 030531 130 TIADFERQGLDRLQIMPGTAQLC-GFLDSKKIRSSSTVFKVSFFR 173 (175)
Q Consensus 130 ~~~~~~~~~~~~~~l~PG~~e~L-~~Lk~~gi~laIaTs~~~~f~ 173 (175)
.+.+.+. ..+.++||+.|+| +.|+++|++++|+||+++.++
T Consensus 85 ~f~~~~~---~~~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~ 126 (211)
T PRK11590 85 DFVRWFR---DNVTAFPVVQERLTTYLLSSDADVWLITGSPQPLV 126 (211)
T ss_pred HHHHHHH---HhCcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHH
Confidence 3333222 2267799999999 678989999999999998765
No 31
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=99.21 E-value=7.6e-11 Score=92.84 Aligned_cols=30 Identities=7% Similarity=-0.182 Sum_probs=25.6
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEcCCCCCC
Q 030531 143 QIMPGTAQLCGFLDSKKIRSSSTVFKVSFF 172 (175)
Q Consensus 143 ~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f 172 (175)
.+.+++.++|+.|+++|++++|+||+.+..
T Consensus 106 ~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~ 135 (197)
T TIGR01548 106 ETLLTPKGLLRELHRAPKGMAVVTGRPRKD 135 (197)
T ss_pred ccccCHHHHHHHHHHcCCcEEEECCCCHHH
Confidence 456667999999999999999999997643
No 32
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=99.21 E-value=5.9e-11 Score=89.51 Aligned_cols=33 Identities=15% Similarity=-0.011 Sum_probs=28.7
Q ss_pred CCCCCchhHHHHHHHHHHCCCcEEEEcCCCCCC
Q 030531 140 DRLQIMPGTAQLCGFLDSKKIRSSSTVFKVSFF 172 (175)
Q Consensus 140 ~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f 172 (175)
.....+||+.++|+.|+++|++++|+||+....
T Consensus 61 ~~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~ 93 (154)
T TIGR01549 61 AEEAYIRGAADLLKRLKEAGIKLGIISNGSLRA 93 (154)
T ss_pred hhheeccCHHHHHHHHHHCcCeEEEEeCCchHH
Confidence 455678999999999999999999999987653
No 33
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.20 E-value=6e-11 Score=94.48 Aligned_cols=103 Identities=17% Similarity=0.139 Sum_probs=58.3
Q ss_pred CCCCCCCCcceEEEeccccCccChhhHHHHHHHHcCChh-HH---HhhccC-CCHHHHH-HHHhcCChHHHHHHHHHHHH
Q 030531 60 SPPKPKTRLRGVVFDMDGTLTVPVIDFPAMYRAVLGEDE-YK---RVKAEN-PTGIDIL-HHIESWSPDLQRHAYQTIAD 133 (175)
Q Consensus 60 ~~~~~~~~ikaVIFDmDGTLvDSe~~~~a~~~~~~g~~~-~~---~~~~~~-~~~~~i~-~~i~~l~~~~~~~~~~~~~~ 133 (175)
.......++|+|+|||||||+|++.. ..+.+ .+|... .. .....+ ....+.. ..+..+..... +.+.+
T Consensus 6 ~~~~~~~~~k~iiFD~DGTL~~~~~~-~~l~~-~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~~~~~ 79 (219)
T TIGR00338 6 ELSPLLRSKKLVVFDMDSTLINAETI-DEIAK-IAGVEEEVSEITERAMRGELDFKASLRERVALLKGLPV----ELLKE 79 (219)
T ss_pred cchhhhccCCEEEEeCcccCCCchHH-HHHHH-HhCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCCH----HHHHH
Confidence 44445677899999999999999743 22212 345532 10 110011 1111111 11111111001 11111
Q ss_pred HHHhcCCCCCCchhHHHHHHHHHHCCCcEEEEcCCCCCC
Q 030531 134 FERQGLDRLQIMPGTAQLCGFLDSKKIRSSSTVFKVSFF 172 (175)
Q Consensus 134 ~~~~~~~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f 172 (175)
. ....+++||+.++|+.|+++|++++|+||+...+
T Consensus 80 ~----~~~~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~ 114 (219)
T TIGR00338 80 V----RENLPLTEGAEELVKTLKEKGYKVAVISGGFDLF 114 (219)
T ss_pred H----HhcCCcCCCHHHHHHHHHHCCCEEEEECCCcHHH
Confidence 1 2346799999999999999999999999987654
No 34
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.19 E-value=1.3e-10 Score=91.59 Aligned_cols=31 Identities=16% Similarity=0.079 Sum_probs=27.7
Q ss_pred CCCCCchhHHHHHHHHHHCCCcEEEEcCCCC
Q 030531 140 DRLQIMPGTAQLCGFLDSKKIRSSSTVFKVS 170 (175)
Q Consensus 140 ~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~ 170 (175)
....++||+.++|+.|+++|++++|+||+..
T Consensus 102 ~~~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~ 132 (203)
T TIGR02252 102 EPWQVYPDAIKLLKDLRERGLILGVISNFDS 132 (203)
T ss_pred CcceeCcCHHHHHHHHHHCCCEEEEEeCCch
Confidence 3457899999999999999999999999764
No 35
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.18 E-value=2.6e-10 Score=91.05 Aligned_cols=101 Identities=16% Similarity=0.091 Sum_probs=58.1
Q ss_pred CcceEEEeccccCccChhh-HHHHHH--HHcCChh-HH--HhhccCCCHHHHHHHHhc---CChHHHHHHHHHHHH-HHH
Q 030531 67 RLRGVVFDMDGTLTVPVID-FPAMYR--AVLGEDE-YK--RVKAENPTGIDILHHIES---WSPDLQRHAYQTIAD-FER 136 (175)
Q Consensus 67 ~ikaVIFDmDGTLvDSe~~-~~a~~~--~~~g~~~-~~--~~~~~~~~~~~i~~~i~~---l~~~~~~~~~~~~~~-~~~ 136 (175)
++|+||||+||||+|++.. ..++.. ..+|... .. .....+....+++..+.. .+.. .++..+.+.+ +..
T Consensus 3 ~~~~viFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 81 (221)
T PRK10563 3 QIEAVFFDCDGTLVDSEVICSRAYVTMFAEFGITLSLEEVFKRFKGVKLYEIIDIISKEHGVTLA-KAELEPVYRAEVAR 81 (221)
T ss_pred CCCEEEECCCCCCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHH
Confidence 4899999999999999853 333311 1246431 11 111134444444444321 2111 1222222222 222
Q ss_pred hcCCCCCCchhHHHHHHHHHHCCCcEEEEcCCCCC
Q 030531 137 QGLDRLQIMPGTAQLCGFLDSKKIRSSSTVFKVSF 171 (175)
Q Consensus 137 ~~~~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~ 171 (175)
.......++||+.++|+.| ++++||+||+...
T Consensus 82 ~~~~~~~~~~gv~~~L~~L---~~~~~ivTn~~~~ 113 (221)
T PRK10563 82 LFDSELEPIAGANALLESI---TVPMCVVSNGPVS 113 (221)
T ss_pred HHHccCCcCCCHHHHHHHc---CCCEEEEeCCcHH
Confidence 2235688999999999999 4899999998753
No 36
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=99.16 E-value=3.9e-10 Score=91.54 Aligned_cols=107 Identities=17% Similarity=0.184 Sum_probs=67.6
Q ss_pred CCcceEEEeccccCccChhhHHHHHHHH---cCChh--HHHhhccCCCHHHHHHHHhcCC--hHHHHHHHHHHHHHHHhc
Q 030531 66 TRLRGVVFDMDGTLTVPVIDFPAMYRAV---LGEDE--YKRVKAENPTGIDILHHIESWS--PDLQRHAYQTIADFERQG 138 (175)
Q Consensus 66 ~~ikaVIFDmDGTLvDSe~~~~a~~~~~---~g~~~--~~~~~~~~~~~~~i~~~i~~l~--~~~~~~~~~~~~~~~~~~ 138 (175)
..+.+++|||||||+||+..+...++.. +|... .......|....+..+.+..+. +-..++.....++.....
T Consensus 8 ~~~~~~lfD~dG~lvdte~~y~~~~~~~~~~ygk~~~~~~~~~~mG~~~~eaa~~~~~~~~dp~s~ee~~~e~~~~~~~~ 87 (222)
T KOG2914|consen 8 LKVSACLFDMDGTLVDTEDLYTEAWQELLDRYGKPYPWDVKVKSMGKRTSEAARLFVKKLPDPVSREEFNKEEEEILDRL 87 (222)
T ss_pred cceeeEEEecCCcEEecHHHHHHHHHHHHHHcCCCChHHHHHHHcCCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Confidence 3467999999999999997544333332 45321 1111224555566666554221 111222222233333445
Q ss_pred CCCCCCchhHHHHHHHHHHCCCcEEEEcCCCCCC
Q 030531 139 LDRLQIMPGTAQLCGFLDSKKIRSSSTVFKVSFF 172 (175)
Q Consensus 139 ~~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f 172 (175)
.....++||+.++++.|+.+|+++|++|+.++.-
T Consensus 88 ~~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~ 121 (222)
T KOG2914|consen 88 FMNSILMPGAEKLVNHLKNNGIPVALATSSTSAS 121 (222)
T ss_pred ccccccCCcHHHHHHHHHhCCCCeeEEecCCccc
Confidence 6788999999999999999999999999986643
No 37
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.16 E-value=1.4e-10 Score=94.40 Aligned_cols=31 Identities=13% Similarity=0.001 Sum_probs=26.9
Q ss_pred CCCCCchhHHHHHHHHHHCCCcEEEEcCCCCC
Q 030531 140 DRLQIMPGTAQLCGFLDSKKIRSSSTVFKVSF 171 (175)
Q Consensus 140 ~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~ 171 (175)
..+.++||+.++|+.|+++ ++++|+||+...
T Consensus 110 ~~~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~ 140 (238)
T PRK10748 110 SRIDVPQATHDTLKQLAKK-WPLVAITNGNAQ 140 (238)
T ss_pred hcCCCCccHHHHHHHHHcC-CCEEEEECCCch
Confidence 4578999999999999975 999999998653
No 38
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.15 E-value=1.6e-10 Score=111.65 Aligned_cols=108 Identities=15% Similarity=0.075 Sum_probs=61.4
Q ss_pred CCCCcceEEEeccccCccChhh-HHHHHHH---HcCChh--HHHhhccCCCHHHHHHHHh---cCCh-HHHHHHHHHHHH
Q 030531 64 PKTRLRGVVFDMDGTLTVPVID-FPAMYRA---VLGEDE--YKRVKAENPTGIDILHHIE---SWSP-DLQRHAYQTIAD 133 (175)
Q Consensus 64 ~~~~ikaVIFDmDGTLvDSe~~-~~a~~~~---~~g~~~--~~~~~~~~~~~~~i~~~i~---~l~~-~~~~~~~~~~~~ 133 (175)
+..++++|||||||||+||+.. ..++ .+ .+|.+. .......+....++++.+. .+.. ...+...++++.
T Consensus 71 ~~~~ikaVIFDlDGTLiDS~~~~~~a~-~~~~~~~G~~it~e~~~~~~G~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 149 (1057)
T PLN02919 71 EWGKVSAVLFDMDGVLCNSEEPSRRAA-VDVFAEMGVEVTVEDFVPFMGTGEANFLGGVASVKGVKGFDPDAAKKRFFEI 149 (1057)
T ss_pred cCCCCCEEEECCCCCeEeChHHHHHHH-HHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 4567999999999999999963 3333 22 245532 1111113344444443321 1111 111111122222
Q ss_pred HHHhc--CCCCCCchhHHHHHHHHHHCCCcEEEEcCCCCCC
Q 030531 134 FERQG--LDRLQIMPGTAQLCGFLDSKKIRSSSTVFKVSFF 172 (175)
Q Consensus 134 ~~~~~--~~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f 172 (175)
+...+ .....++||+.++|+.|+++|++++|+||+....
T Consensus 150 ~~~~~~~~~~~~~~pG~~elL~~Lk~~G~~l~IvSn~~~~~ 190 (1057)
T PLN02919 150 YLEKYAKPNSGIGFPGALELITQCKNKGLKVAVASSADRIK 190 (1057)
T ss_pred HHHHhhhcccCccCccHHHHHHHHHhCCCeEEEEeCCcHHH
Confidence 22211 1234589999999999999999999999987543
No 39
>PRK09449 dUMP phosphatase; Provisional
Probab=99.14 E-value=1.3e-10 Score=92.88 Aligned_cols=31 Identities=16% Similarity=0.194 Sum_probs=27.2
Q ss_pred CCCCCchhHHHHHHHHHHCCCcEEEEcCCCCC
Q 030531 140 DRLQIMPGTAQLCGFLDSKKIRSSSTVFKVSF 171 (175)
Q Consensus 140 ~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~ 171 (175)
....++||+.++|+.|+ +|+++||+||+...
T Consensus 92 ~~~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~ 122 (224)
T PRK09449 92 EICTPLPGAVELLNALR-GKVKMGIITNGFTE 122 (224)
T ss_pred hcCccCccHHHHHHHHH-hCCeEEEEeCCcHH
Confidence 45779999999999999 58999999998754
No 40
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.14 E-value=3.7e-10 Score=88.72 Aligned_cols=32 Identities=16% Similarity=-0.025 Sum_probs=28.7
Q ss_pred CCCCCchhHHHHHHHHHHCCCcEEEEcCCCCC
Q 030531 140 DRLQIMPGTAQLCGFLDSKKIRSSSTVFKVSF 171 (175)
Q Consensus 140 ~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~ 171 (175)
..+.++||+.++|+.|+++|++++|+||++..
T Consensus 89 ~~~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~ 120 (198)
T TIGR01428 89 LRLPPHPDVPAGLRALKERGYRLAILSNGSPA 120 (198)
T ss_pred hcCCCCCCHHHHHHHHHHCCCeEEEEeCCCHH
Confidence 35679999999999999999999999998754
No 41
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.13 E-value=1.8e-10 Score=92.37 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=30.7
Q ss_pred CCCCCchhHHHHHHHHHHCCCcEEEEcCCCCCCc
Q 030531 140 DRLQIMPGTAQLCGFLDSKKIRSSSTVFKVSFFR 173 (175)
Q Consensus 140 ~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f~ 173 (175)
..++++||+.|+|+.|+++|++++|+||+...+.
T Consensus 71 ~~~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i 104 (219)
T PRK09552 71 ETAEIREGFHEFVQFVKENNIPFYVVSGGMDFFV 104 (219)
T ss_pred hCCCcCcCHHHHHHHHHHcCCeEEEECCCcHHHH
Confidence 4578999999999999999999999999987654
No 42
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.09 E-value=3.4e-10 Score=89.84 Aligned_cols=32 Identities=25% Similarity=0.237 Sum_probs=28.3
Q ss_pred CCCCCchhHHHHHHHHHHCCCcEEEEcCCCCCC
Q 030531 140 DRLQIMPGTAQLCGFLDSKKIRSSSTVFKVSFF 172 (175)
Q Consensus 140 ~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f 172 (175)
..+.++||+.++|+.|+++ ++++|+||+....
T Consensus 94 ~~~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~ 125 (224)
T TIGR02254 94 EGHQLLPGAFELMENLQQK-FRLYIVTNGVRET 125 (224)
T ss_pred ccCeeCccHHHHHHHHHhc-CcEEEEeCCchHH
Confidence 4578999999999999999 9999999987654
No 43
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.04 E-value=4.8e-10 Score=84.40 Aligned_cols=99 Identities=18% Similarity=0.123 Sum_probs=55.4
Q ss_pred EEEeccccCccChh-hHHHHH---HHHcCChh-HHH-hhccCCCHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCCCC
Q 030531 71 VVFDMDGTLTVPVI-DFPAMY---RAVLGEDE-YKR-VKAENPTGIDILHHIESWSPDLQRHAYQTIADFERQGLDRLQI 144 (175)
Q Consensus 71 VIFDmDGTLvDSe~-~~~a~~---~~~~g~~~-~~~-~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l 144 (175)
|+||+||||+|+.. .+.++. .+.+|... ... ....+....+.+..+............+.+.++ .......+
T Consensus 1 iifD~dgtL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 78 (176)
T PF13419_consen 1 IIFDLDGTLVDTDPAIFRALQRLALEEFGLEISAEELRELFGKSYEEALERLLERFGIDPEEIQELFREY--NLESKLQP 78 (176)
T ss_dssp EEEESBTTTEEHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHGGEEE
T ss_pred cEEECCCCcEeCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHhhhccchhHHHHHHHhhhh--hhhhccch
Confidence 79999999999996 333332 12234331 000 111122222222222211111122233333333 12356789
Q ss_pred chhHHHHHHHHHHCCCcEEEEcCCCCC
Q 030531 145 MPGTAQLCGFLDSKKIRSSSTVFKVSF 171 (175)
Q Consensus 145 ~PG~~e~L~~Lk~~gi~laIaTs~~~~ 171 (175)
+||+.++|+.|+++|++++|+||+...
T Consensus 79 ~~~~~~~L~~l~~~~~~~~i~Sn~~~~ 105 (176)
T PF13419_consen 79 YPGVRELLERLKAKGIPLVIVSNGSRE 105 (176)
T ss_dssp STTHHHHHHHHHHTTSEEEEEESSEHH
T ss_pred hhhhhhhhhhcccccceeEEeecCCcc
Confidence 999999999999999999999998654
No 44
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.04 E-value=5.8e-10 Score=85.61 Aligned_cols=30 Identities=17% Similarity=0.138 Sum_probs=27.8
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEcCCCCC
Q 030531 142 LQIMPGTAQLCGFLDSKKIRSSSTVFKVSF 171 (175)
Q Consensus 142 ~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~ 171 (175)
++++||+.++|+.|+++|++++|+||+...
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~ 113 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRD 113 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchH
Confidence 789999999999999999999999998753
No 45
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=98.99 E-value=2.4e-09 Score=91.40 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=31.0
Q ss_pred CCCCCchhHHHHHHHHHHCCCcEEEEcCCCCCCc
Q 030531 140 DRLQIMPGTAQLCGFLDSKKIRSSSTVFKVSFFR 173 (175)
Q Consensus 140 ~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f~ 173 (175)
..++++||+.++|+.|++.|++++|+|++..+|.
T Consensus 178 ~~l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~ 211 (322)
T PRK11133 178 ENLPLMPGLTELVLKLQALGWKVAIASGGFTYFA 211 (322)
T ss_pred HhCCCChhHHHHHHHHHHcCCEEEEEECCcchhH
Confidence 4578999999999999999999999999998764
No 46
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=98.96 E-value=9.4e-10 Score=86.63 Aligned_cols=33 Identities=15% Similarity=0.251 Sum_probs=29.3
Q ss_pred CCCCCchhHHHHHHHHHHCCCcEEEEcCCCCCCc
Q 030531 140 DRLQIMPGTAQLCGFLDSKKIRSSSTVFKVSFFR 173 (175)
Q Consensus 140 ~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f~ 173 (175)
..+.++||+.++|+.|+++ ++++|+||+...++
T Consensus 65 ~~~~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~ 97 (205)
T PRK13582 65 ATLDPLPGAVEFLDWLRER-FQVVILSDTFYEFA 97 (205)
T ss_pred HhCCCCCCHHHHHHHHHhc-CCEEEEeCCcHHHH
Confidence 4577899999999999999 99999999987654
No 47
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=98.93 E-value=4.2e-09 Score=86.33 Aligned_cols=76 Identities=12% Similarity=0.009 Sum_probs=49.6
Q ss_pred eEEEeccccCccChhhHHHHHHHHcCChhHHHhhccCCCHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCCCCchhHH
Q 030531 70 GVVFDMDGTLTVPVIDFPAMYRAVLGEDEYKRVKAENPTGIDILHHIESWSPDLQRHAYQTIADFERQGLDRLQIMPGTA 149 (175)
Q Consensus 70 aVIFDmDGTLvDSe~~~~a~~~~~~g~~~~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~PG~~ 149 (175)
+|+||+||||+||.+.+. +|.. ..+..+ .+++.. + ..++.+.+ .......+.+++.
T Consensus 65 aViFDlDgTLlDSs~~~~------~G~~--------~~s~~~-~~~l~g--~----~~w~~~~~---~~~~~s~p~~~a~ 120 (237)
T TIGR01672 65 AVSFDIDDTVLFSSPGFW------RGKK--------TFSPGS-EDYLKN--Q----VFWEKVNN---GWDEFSIPKEVAR 120 (237)
T ss_pred EEEEeCCCccccCcHHHh------CCcc--------cCCHHH-hhhhcC--h----HHHHHHHH---hcccCCcchhHHH
Confidence 999999999999998661 4542 111111 111111 1 11222222 2245567888899
Q ss_pred HHHHHHHHCCCcEEEEcCCC
Q 030531 150 QLCGFLDSKKIRSSSTVFKV 169 (175)
Q Consensus 150 e~L~~Lk~~gi~laIaTs~~ 169 (175)
|+|+.|+++|++++|+||+.
T Consensus 121 elL~~l~~~G~~i~iVTnr~ 140 (237)
T TIGR01672 121 QLIDMHQRRGDAIFFVTGRT 140 (237)
T ss_pred HHHHHHHHCCCEEEEEeCCC
Confidence 99999999999999999983
No 48
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=98.91 E-value=1.4e-08 Score=80.14 Aligned_cols=30 Identities=10% Similarity=0.045 Sum_probs=27.0
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEcCCCCC
Q 030531 142 LQIMPGTAQLCGFLDSKKIRSSSTVFKVSF 171 (175)
Q Consensus 142 ~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~ 171 (175)
..++||+.++|+.|+++|++++|+||+...
T Consensus 83 ~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~ 112 (199)
T PRK09456 83 VALRPEVIAIMHKLREQGHRVVVLSNTNRL 112 (199)
T ss_pred hccCHHHHHHHHHHHhCCCcEEEEcCCchh
Confidence 358999999999999999999999998753
No 49
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.84 E-value=1.3e-08 Score=82.11 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=30.1
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEcCCCCCCc
Q 030531 142 LQIMPGTAQLCGFLDSKKIRSSSTVFKVSFFR 173 (175)
Q Consensus 142 ~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f~ 173 (175)
..++||+.|+++.++++|++++|+|+++.+|+
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv 107 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLV 107 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHH
Confidence 78999999999999999999999999988765
No 50
>PLN02811 hydrolase
Probab=98.82 E-value=2e-08 Score=80.46 Aligned_cols=97 Identities=16% Similarity=0.094 Sum_probs=54.8
Q ss_pred ccccCccChhh-HHHHH--HHHcCChh-HH-HhhccCCCHHHHHHHHh---cCChH-HHHHHHHHHHHHHHhcCCCCCCc
Q 030531 75 MDGTLTVPVID-FPAMY--RAVLGEDE-YK-RVKAENPTGIDILHHIE---SWSPD-LQRHAYQTIADFERQGLDRLQIM 145 (175)
Q Consensus 75 mDGTLvDSe~~-~~a~~--~~~~g~~~-~~-~~~~~~~~~~~i~~~i~---~l~~~-~~~~~~~~~~~~~~~~~~~~~l~ 145 (175)
|||||+||+.. ..+|. .+.+|+.. .. .....|....+++..+. .++.. ..++..+.++.+.........++
T Consensus 1 ~DGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (220)
T PLN02811 1 MDGLLLDTEKFYTEVQEKILARYGKTFDWSLKAKMMGKKAIEAARIFVEESGLSDSLSPEDFLVEREAMLQDLFPTSDLM 80 (220)
T ss_pred CCCcceecHHHHHHHHHHHHHHcCCCCCHHHHHHccCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhhCCCC
Confidence 79999999963 33331 12345532 11 11123444444444332 12210 11122222333333333467899
Q ss_pred hhHHHHHHHHHHCCCcEEEEcCCCCC
Q 030531 146 PGTAQLCGFLDSKKIRSSSTVFKVSF 171 (175)
Q Consensus 146 PG~~e~L~~Lk~~gi~laIaTs~~~~ 171 (175)
||+.++|+.|+++|++++|+||+...
T Consensus 81 ~gv~e~l~~L~~~g~~~~i~S~~~~~ 106 (220)
T PLN02811 81 PGAERLVRHLHAKGIPIAIATGSHKR 106 (220)
T ss_pred ccHHHHHHHHHHCCCcEEEEeCCchh
Confidence 99999999999999999999998753
No 51
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=98.82 E-value=5.5e-09 Score=81.20 Aligned_cols=30 Identities=17% Similarity=-0.065 Sum_probs=25.3
Q ss_pred CCCCCchhHHHHHHHHHHCCCcEEEEcCCCCCC
Q 030531 140 DRLQIMPGTAQLCGFLDSKKIRSSSTVFKVSFF 172 (175)
Q Consensus 140 ~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f 172 (175)
..+.++||+.++|+.|+ ++++|+||++...
T Consensus 81 ~~~~~~~g~~~~L~~L~---~~~~i~Tn~~~~~ 110 (184)
T TIGR01993 81 EKLKPDPELRNLLLRLP---GRKIIFTNGDRAH 110 (184)
T ss_pred HhCCCCHHHHHHHHhCC---CCEEEEeCCCHHH
Confidence 35679999999999997 4899999988653
No 52
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=98.80 E-value=1.6e-08 Score=77.48 Aligned_cols=34 Identities=21% Similarity=0.400 Sum_probs=30.0
Q ss_pred CCCCCchhHHHHHHHHHHCCCcEEEEcCCCCCCc
Q 030531 140 DRLQIMPGTAQLCGFLDSKKIRSSSTVFKVSFFR 173 (175)
Q Consensus 140 ~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f~ 173 (175)
+.++++||+.++|+.++++|++++|+|++.+.+.
T Consensus 70 ~~~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i 103 (177)
T TIGR01488 70 RQVALRPGARELISWLKERGIDTVIVSGGFDFFV 103 (177)
T ss_pred hcCCcCcCHHHHHHHHHHCCCEEEEECCCcHHHH
Confidence 4566899999999999999999999999987654
No 53
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=98.79 E-value=4.1e-08 Score=78.88 Aligned_cols=33 Identities=12% Similarity=0.034 Sum_probs=28.7
Q ss_pred CCCCchhHHHHHH-HHHHCCCcEEEEcCCCCCCc
Q 030531 141 RLQIMPGTAQLCG-FLDSKKIRSSSTVFKVSFFR 173 (175)
Q Consensus 141 ~~~l~PG~~e~L~-~Lk~~gi~laIaTs~~~~f~ 173 (175)
...++||+.|+|+ .++++|++++|+||+++.++
T Consensus 92 ~~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~ 125 (210)
T TIGR01545 92 KVTAFPLVAERLRQYLESSDADIWLITGSPQPLV 125 (210)
T ss_pred hCCCCccHHHHHHHHHHhCCCEEEEEcCCcHHHH
Confidence 3568999999995 88989999999999988764
No 54
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=98.79 E-value=2.1e-08 Score=77.30 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=28.8
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEcCCCCCC
Q 030531 141 RLQIMPGTAQLCGFLDSKKIRSSSTVFKVSFF 172 (175)
Q Consensus 141 ~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f 172 (175)
.++++||+.++|+.|+++|++++|+||+...+
T Consensus 70 ~~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~ 101 (188)
T TIGR01489 70 SAPIDPGFKEFIAFIKEHGIDFIVISDGNDFF 101 (188)
T ss_pred hCCCCccHHHHHHHHHHcCCcEEEEeCCcHHH
Confidence 37899999999999999999999999987654
No 55
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=98.71 E-value=3.9e-08 Score=78.67 Aligned_cols=33 Identities=18% Similarity=0.258 Sum_probs=29.9
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEcCCCCCCc
Q 030531 141 RLQIMPGTAQLCGFLDSKKIRSSSTVFKVSFFR 173 (175)
Q Consensus 141 ~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f~ 173 (175)
...++||+.++|+.|+++|++++|+|++...+.
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i 100 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGMDFFV 100 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCcHHHH
Confidence 478999999999999999999999999987654
No 56
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=98.63 E-value=6.6e-08 Score=77.36 Aligned_cols=33 Identities=12% Similarity=0.151 Sum_probs=28.7
Q ss_pred CCCCCchhHHHHHHHHHHCCCcEEEEcCCCCCCc
Q 030531 140 DRLQIMPGTAQLCGFLDSKKIRSSSTVFKVSFFR 173 (175)
Q Consensus 140 ~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f~ 173 (175)
..++++||+.++|+.|++++ +++|+|++...++
T Consensus 65 ~~i~l~pga~ell~~lk~~~-~~~IVS~~~~~~~ 97 (203)
T TIGR02137 65 ATLKPLEGAVEFVDWLRERF-QVVILSDTFYEFS 97 (203)
T ss_pred HhCCCCccHHHHHHHHHhCC-eEEEEeCChHHHH
Confidence 45679999999999999975 9999999987764
No 57
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=98.59 E-value=5e-08 Score=74.91 Aligned_cols=26 Identities=15% Similarity=0.098 Sum_probs=21.3
Q ss_pred CCCCCchhHHHHHHHHHHCCCcEEEEcCCCCCC
Q 030531 140 DRLQIMPGTAQLCGFLDSKKIRSSSTVFKVSFF 172 (175)
Q Consensus 140 ~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f 172 (175)
..+.++||+.++|+ ++||+||++..+
T Consensus 87 ~~~~~~~g~~~~L~-------~~~i~Tn~~~~~ 112 (175)
T TIGR01493 87 KNLPPWPDSAAALA-------RVAILSNASHWA 112 (175)
T ss_pred hcCCCCCchHHHHH-------HHhhhhCCCHHH
Confidence 35679999999999 489999987654
No 58
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=98.56 E-value=2.1e-07 Score=73.05 Aligned_cols=32 Identities=6% Similarity=0.059 Sum_probs=28.5
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEcCCCCCCc
Q 030531 142 LQIMPGTAQLCGFLDSKKIRSSSTVFKVSFFR 173 (175)
Q Consensus 142 ~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f~ 173 (175)
..++||+.++|+.++++|++++|+|++.+.++
T Consensus 86 ~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v 117 (202)
T TIGR01490 86 SILYPEARDLIRWHKAEGHTIVLVSASLTILV 117 (202)
T ss_pred HhccHHHHHHHHHHHHCCCEEEEEeCCcHHHH
Confidence 46899999999999999999999999886543
No 59
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=98.40 E-value=6e-07 Score=73.67 Aligned_cols=76 Identities=12% Similarity=0.007 Sum_probs=48.2
Q ss_pred eEEEeccccCccChhhHHHHHHHHcCChhHHHhhccCCCHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCCCCchhHH
Q 030531 70 GVVFDMDGTLTVPVIDFPAMYRAVLGEDEYKRVKAENPTGIDILHHIESWSPDLQRHAYQTIADFERQGLDRLQIMPGTA 149 (175)
Q Consensus 70 aVIFDmDGTLvDSe~~~~a~~~~~~g~~~~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~PG~~ 149 (175)
+|+||+|||++|+.+++..- ...++. + ..+ + +. .++.++.+ .........++||+.
T Consensus 65 av~~DIDeTvldnsp~~~~~-~~~f~~---------~--~~~---y---~~---~~~fw~~y---~~~~~~~a~p~~Ga~ 120 (237)
T PRK11009 65 AVGFDIDDTVLFSSPGFWRG-KKTFSP---------G--SED---Y---LK---NQKFWEKM---NNGWDEFSIPKEVAR 120 (237)
T ss_pred EEEEECcCccccCCchheee-eeccCC---------C--ccc---c---cC---hHHHHHHH---HhcccccCcchHHHH
Confidence 99999999999987642111 111111 1 000 1 11 11122223 222345688999999
Q ss_pred HHHHHHHHCCCcEEEEcCCC
Q 030531 150 QLCGFLDSKKIRSSSTVFKV 169 (175)
Q Consensus 150 e~L~~Lk~~gi~laIaTs~~ 169 (175)
|+|+.|+++|++++++||+.
T Consensus 121 elL~~L~~~G~~I~iVTnR~ 140 (237)
T PRK11009 121 QLIDMHVKRGDSIYFITGRT 140 (237)
T ss_pred HHHHHHHHCCCeEEEEeCCC
Confidence 99999999999999999975
No 60
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=98.36 E-value=3.8e-07 Score=67.68 Aligned_cols=29 Identities=3% Similarity=-0.057 Sum_probs=26.5
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEcCC-CCC
Q 030531 143 QIMPGTAQLCGFLDSKKIRSSSTVFK-VSF 171 (175)
Q Consensus 143 ~l~PG~~e~L~~Lk~~gi~laIaTs~-~~~ 171 (175)
.++||+.++|+.|+++|++++|+||+ ...
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~ 58 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPH 58 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHH
Confidence 68999999999999999999999999 543
No 61
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=98.35 E-value=4.6e-06 Score=67.67 Aligned_cols=41 Identities=7% Similarity=-0.162 Sum_probs=34.1
Q ss_pred HHHHHHhcCCCCCCchhHHHHHHHHHHCCCcEEEEcCCCCC
Q 030531 131 IADFERQGLDRLQIMPGTAQLCGFLDSKKIRSSSTVFKVSF 171 (175)
Q Consensus 131 ~~~~~~~~~~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~ 171 (175)
+++.+........++||+.++|+.|+++|++++|+||++..
T Consensus 83 w~~~Y~~~~~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~ 123 (220)
T TIGR01691 83 WRQGYESGELTSHLYPDVPPALEAWLQLGLRLAVYSSGSVP 123 (220)
T ss_pred HHHHHhcCCcccCcCcCHHHHHHHHHHCCCEEEEEeCCCHH
Confidence 55555555667789999999999999999999999998753
No 62
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=98.31 E-value=2e-06 Score=68.32 Aligned_cols=29 Identities=14% Similarity=-0.019 Sum_probs=26.3
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEcCCCC
Q 030531 141 RLQIMPGTAQLCGFLDSKKIRSSSTVFKVS 170 (175)
Q Consensus 141 ~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~ 170 (175)
..+++|++.++|+.|+++ ++++|+||+..
T Consensus 97 ~~~~~~~~~~~L~~l~~~-~~l~ilTNg~~ 125 (229)
T COG1011 97 LLPDYPEALEALKELGKK-YKLGILTNGAR 125 (229)
T ss_pred hCccChhHHHHHHHHHhh-ccEEEEeCCCh
Confidence 578999999999999998 99999999754
No 63
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=98.29 E-value=3.9e-07 Score=67.14 Aligned_cols=27 Identities=7% Similarity=0.020 Sum_probs=25.2
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEcCCC
Q 030531 143 QIMPGTAQLCGFLDSKKIRSSSTVFKV 169 (175)
Q Consensus 143 ~l~PG~~e~L~~Lk~~gi~laIaTs~~ 169 (175)
.++||+.++|+.|+++|++++|+||+.
T Consensus 25 ~~~~~v~~~l~~L~~~g~~l~i~Sn~~ 51 (132)
T TIGR01662 25 ILYPEVPDALAELKEAGYKVVIVTNQS 51 (132)
T ss_pred eeCCCHHHHHHHHHHCCCEEEEEECCc
Confidence 379999999999999999999999987
No 64
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=98.27 E-value=1.8e-06 Score=67.92 Aligned_cols=96 Identities=13% Similarity=0.118 Sum_probs=51.2
Q ss_pred EEEeccccCccChhhHHHHHHHHcCChh-HHHhhccCCCHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCCCCchhHH
Q 030531 71 VVFDMDGTLTVPVIDFPAMYRAVLGEDE-YKRVKAENPTGIDILHHIESWSPDLQRHAYQTIADFERQGLDRLQIMPGTA 149 (175)
Q Consensus 71 VIFDmDGTLvDSe~~~~a~~~~~~g~~~-~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~PG~~ 149 (175)
|.+||||||+|+...+..+.++.++... ...+...+.. ..+.+....++..+.+.+.+.+ ......++++||+.
T Consensus 5 I~iDiDgVLad~~~~~~~~~n~~~~~~~~~~~~~~~~~~---~~~~~g~~~~e~~~~~~~~~~~--~~~f~~l~p~~gA~ 79 (191)
T PF06941_consen 5 IAIDIDGVLADFNSAFIEWFNEEFGKNPELTPEDITGYW---DWEKWGITEPEFYEKLWRFYEE--PGFFSNLPPIPGAV 79 (191)
T ss_dssp EEEESBTTTB-HHHHHHHHHHHHTTTS----GGGGTSSS---HHHHHHHHSTTHHHHHHHHHTS--TTTTTT--B-TTHH
T ss_pred EEEECCCCCcccHHHHHHHHHHHcCCCCCCCHHHhhhhh---HHHHhCCCCHHHHHHHHHHHhC--hhhhcCCCccHHHH
Confidence 7899999999998766655565666531 1111101101 1122222222222222222211 12346789999999
Q ss_pred HHHHHHHHCCCcEEEEcCCCCC
Q 030531 150 QLCGFLDSKKIRSSSTVFKVSF 171 (175)
Q Consensus 150 e~L~~Lk~~gi~laIaTs~~~~ 171 (175)
|+|+.|.+.|..+.++|+.+..
T Consensus 80 e~l~~L~~~g~~~~~Itar~~~ 101 (191)
T PF06941_consen 80 EALKKLRDKGHEIVIITARPPE 101 (191)
T ss_dssp HHHHHHHTSTTEEEEEEE-SSS
T ss_pred HHHHHHHHcCCcEEEEEecCcc
Confidence 9999999999888888876654
No 65
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=98.26 E-value=6.5e-07 Score=67.63 Aligned_cols=28 Identities=14% Similarity=0.079 Sum_probs=25.9
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEcCCCC
Q 030531 143 QIMPGTAQLCGFLDSKKIRSSSTVFKVS 170 (175)
Q Consensus 143 ~l~PG~~e~L~~Lk~~gi~laIaTs~~~ 170 (175)
.++||+.++|+.|+++|++++|+||+.+
T Consensus 27 ~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~ 54 (147)
T TIGR01656 27 QLRPGAVPALLTLRAAGYTVVVVTNQSG 54 (147)
T ss_pred EEcCChHHHHHHHHHCCCEEEEEeCCCc
Confidence 4799999999999999999999999873
No 66
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=98.26 E-value=6.3e-07 Score=64.17 Aligned_cols=34 Identities=21% Similarity=0.245 Sum_probs=29.5
Q ss_pred CCCCCCchhHHHHHHHHHHCCCcEEEEcCCCCCC
Q 030531 139 LDRLQIMPGTAQLCGFLDSKKIRSSSTVFKVSFF 172 (175)
Q Consensus 139 ~~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f 172 (175)
.....++||+.++|+.|+++|++++|+||+...+
T Consensus 20 ~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~ 53 (139)
T cd01427 20 IEELELYPGVKEALKELKEKGIKLALATNKSRRE 53 (139)
T ss_pred cccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHH
Confidence 3567899999999999999999999999986544
No 67
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=98.26 E-value=5.2e-06 Score=69.25 Aligned_cols=74 Identities=15% Similarity=0.211 Sum_probs=49.3
Q ss_pred CCcceEEEeccccCccChhhHHHHHHHHcCChhHHHhhccCCCHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCCCCc
Q 030531 66 TRLRGVVFDMDGTLTVPVIDFPAMYRAVLGEDEYKRVKAENPTGIDILHHIESWSPDLQRHAYQTIADFERQGLDRLQIM 145 (175)
Q Consensus 66 ~~ikaVIFDmDGTLvDSe~~~~a~~~~~~g~~~~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 145 (175)
....+||||+|+|++|+.++.. . . ..+.. + .++ +.+.++.. .....++
T Consensus 73 ~kp~AVV~DIDeTvLdns~y~~-~-~-~~~~~--------~------------~~~-------~~w~~wv~--~~~a~~i 120 (266)
T TIGR01533 73 DKKYAIVLDLDETVLDNSPYQG-Y-Q-VLNNK--------P------------FDP-------ETWDKWVQ--AAQAKPV 120 (266)
T ss_pred CCCCEEEEeCccccccChHHHH-H-H-hcCCC--------c------------CCH-------HHHHHHHH--cCCCCcC
Confidence 3467999999999999987422 1 1 11210 1 111 11111111 2466799
Q ss_pred hhHHHHHHHHHHCCCcEEEEcCCCCC
Q 030531 146 PGTAQLCGFLDSKKIRSSSTVFKVSF 171 (175)
Q Consensus 146 PG~~e~L~~Lk~~gi~laIaTs~~~~ 171 (175)
||+.|+|+.|+++|++++++||+.+.
T Consensus 121 pGA~e~L~~L~~~G~~v~iVTnR~~~ 146 (266)
T TIGR01533 121 AGALDFLNYANSKGVKIFYVSNRSEK 146 (266)
T ss_pred ccHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 99999999999999999999998743
No 68
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=98.20 E-value=6.9e-07 Score=69.55 Aligned_cols=29 Identities=14% Similarity=0.134 Sum_probs=26.4
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEcCCCC
Q 030531 142 LQIMPGTAQLCGFLDSKKIRSSSTVFKVS 170 (175)
Q Consensus 142 ~~l~PG~~e~L~~Lk~~gi~laIaTs~~~ 170 (175)
..++||+.|+|+.|+++|+++||+||+++
T Consensus 28 ~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~ 56 (181)
T PRK08942 28 WIPIPGSIEAIARLKQAGYRVVVATNQSG 56 (181)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCcc
Confidence 35799999999999999999999999874
No 69
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=98.17 E-value=7.3e-07 Score=69.91 Aligned_cols=30 Identities=3% Similarity=0.055 Sum_probs=27.7
Q ss_pred CCCCCCchhHHHHHHHHHHCCCcEEEEcCC
Q 030531 139 LDRLQIMPGTAQLCGFLDSKKIRSSSTVFK 168 (175)
Q Consensus 139 ~~~~~l~PG~~e~L~~Lk~~gi~laIaTs~ 168 (175)
...+.++||+.|+|+.|+++|++++|+||+
T Consensus 41 ~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~ 70 (174)
T TIGR01685 41 GTEVTLIKEVRDVLQTLKDAGTYLATASWN 70 (174)
T ss_pred CCEEEEcccHHHHHHHHHHCCCEEEEEeCC
Confidence 456789999999999999999999999988
No 70
>PRK08238 hypothetical protein; Validated
Probab=98.10 E-value=7.4e-06 Score=73.50 Aligned_cols=34 Identities=3% Similarity=-0.198 Sum_probs=29.7
Q ss_pred CCCCCchhHHHHHHHHHHCCCcEEEEcCCCCCCc
Q 030531 140 DRLQIMPGTAQLCGFLDSKKIRSSSTVFKVSFFR 173 (175)
Q Consensus 140 ~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f~ 173 (175)
+..++.||+.|+|+.++++|++++|+|++.+.++
T Consensus 69 ~~lp~~pga~e~L~~lk~~G~~v~LaTas~~~~a 102 (479)
T PRK08238 69 ATLPYNEEVLDYLRAERAAGRKLVLATASDERLA 102 (479)
T ss_pred hhCCCChhHHHHHHHHHHCCCEEEEEeCCCHHHH
Confidence 3556889999999999999999999999887654
No 71
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=98.09 E-value=3.4e-06 Score=71.09 Aligned_cols=27 Identities=7% Similarity=-0.177 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHCCCcEEEEcCCCCCC
Q 030531 146 PGTAQLCGFLDSKKIRSSSTVFKVSFF 172 (175)
Q Consensus 146 PG~~e~L~~Lk~~gi~laIaTs~~~~f 172 (175)
||+.|+|+.|+++|+++||+||+.+..
T Consensus 149 PgV~EaL~~LkekGikLaIaTS~~Re~ 175 (301)
T TIGR01684 149 PRIYDSLTELKKRGCILVLWSYGDRDH 175 (301)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCHHH
Confidence 788899999999999999999887654
No 72
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=98.02 E-value=6e-06 Score=69.67 Aligned_cols=28 Identities=7% Similarity=-0.202 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHCCCcEEEEcCCCCCCc
Q 030531 146 PGTAQLCGFLDSKKIRSSSTVFKVSFFR 173 (175)
Q Consensus 146 PG~~e~L~~Lk~~gi~laIaTs~~~~f~ 173 (175)
||+.|+|+.|+++|+++||+||+.+..+
T Consensus 151 p~V~EtL~eLkekGikLaIvTNg~Re~v 178 (303)
T PHA03398 151 PFVYDSLDELKERGCVLVLWSYGNREHV 178 (303)
T ss_pred hhHHHHHHHHHHCCCEEEEEcCCChHHH
Confidence 7888999999999999999999876643
No 73
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=97.98 E-value=1.2e-05 Score=65.82 Aligned_cols=36 Identities=28% Similarity=0.362 Sum_probs=31.4
Q ss_pred CCCCCCchhHHHHHHHH--HHCCCcEEEEcCCCCCCcc
Q 030531 139 LDRLQIMPGTAQLCGFL--DSKKIRSSSTVFKVSFFRH 174 (175)
Q Consensus 139 ~~~~~l~PG~~e~L~~L--k~~gi~laIaTs~~~~f~~ 174 (175)
...+++.||+.++++.+ ++.|+.+.|+|.+.++|.+
T Consensus 67 l~~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~ 104 (234)
T PF06888_consen 67 LRSIPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIE 104 (234)
T ss_pred HHcCCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHH
Confidence 46789999999999999 4579999999999988854
No 74
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=97.89 E-value=6.7e-05 Score=59.82 Aligned_cols=34 Identities=12% Similarity=0.114 Sum_probs=30.4
Q ss_pred CCCCCchhHHHHHHHHHHCCCcEEEEcCCCCCCc
Q 030531 140 DRLQIMPGTAQLCGFLDSKKIRSSSTVFKVSFFR 173 (175)
Q Consensus 140 ~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f~ 173 (175)
....+-||++|++..|+++|..+.++|++.+.+.
T Consensus 85 ~k~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i 118 (227)
T KOG1615|consen 85 QKPTLTPGIRELVSRLHARGTQVYLISGGFRQLI 118 (227)
T ss_pred CCCccCCCHHHHHHHHHHcCCeEEEEcCChHHHH
Confidence 4678999999999999999999999999887553
No 75
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=97.88 E-value=1.1e-05 Score=62.30 Aligned_cols=27 Identities=15% Similarity=0.059 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHCCCcEEEEcCCCCCC
Q 030531 146 PGTAQLCGFLDSKKIRSSSTVFKVSFF 172 (175)
Q Consensus 146 PG~~e~L~~Lk~~gi~laIaTs~~~~f 172 (175)
|++.|+|+.++++|+++.|+|+++..+
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~ 118 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEI 118 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHH
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHH
Confidence 666699999999999999999886554
No 76
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=97.73 E-value=6.7e-06 Score=64.23 Aligned_cols=30 Identities=7% Similarity=0.180 Sum_probs=20.3
Q ss_pred CCCCCCchhHHHHHHHHHHCCCcEEEEcCC
Q 030531 139 LDRLQIMPGTAQLCGFLDSKKIRSSSTVFK 168 (175)
Q Consensus 139 ~~~~~l~PG~~e~L~~Lk~~gi~laIaTs~ 168 (175)
.+.+.++|++.++|+.|+++|+++|+||.+
T Consensus 41 g~~v~lypdv~~iL~~L~~~gv~lavASRt 70 (169)
T PF12689_consen 41 GEEVSLYPDVPEILQELKERGVKLAVASRT 70 (169)
T ss_dssp --EE---TTHHHHHHHHHHCT--EEEEE--
T ss_pred CCEEEeCcCHHHHHHHHHHCCCEEEEEECC
Confidence 356789999999999999999999999954
No 77
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=97.70 E-value=1.8e-05 Score=61.83 Aligned_cols=29 Identities=17% Similarity=0.118 Sum_probs=26.1
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEcCCC
Q 030531 141 RLQIMPGTAQLCGFLDSKKIRSSSTVFKV 169 (175)
Q Consensus 141 ~~~l~PG~~e~L~~Lk~~gi~laIaTs~~ 169 (175)
..+++||+.++|+.|++.|++++|+|+..
T Consensus 125 ~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~ 153 (215)
T PF00702_consen 125 RDPLRPGAKEALQELKEAGIKVAILTGDN 153 (215)
T ss_dssp EEEBHTTHHHHHHHHHHTTEEEEEEESSE
T ss_pred cCcchhhhhhhhhhhhccCcceeeeeccc
Confidence 44689999999999999999999999764
No 78
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=97.64 E-value=3.3e-05 Score=65.66 Aligned_cols=29 Identities=3% Similarity=-0.231 Sum_probs=26.4
Q ss_pred CchhHHHHHHHHHHCCCcEEEEcCCCCCC
Q 030531 144 IMPGTAQLCGFLDSKKIRSSSTVFKVSFF 172 (175)
Q Consensus 144 l~PG~~e~L~~Lk~~gi~laIaTs~~~~f 172 (175)
++||+.++|+.|+++|+++||+|||....
T Consensus 32 ~~~~~~e~L~~L~~~Gi~lai~S~n~~~~ 60 (320)
T TIGR01686 32 LHKTLQEKIKTLKKQGFLLALASKNDEDD 60 (320)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEcCCCHHH
Confidence 48999999999999999999999998654
No 79
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.00031 Score=55.67 Aligned_cols=34 Identities=15% Similarity=0.234 Sum_probs=31.2
Q ss_pred CCCCCchhHHHHHHHHHHCCCcEEEEcCCCCCCc
Q 030531 140 DRLQIMPGTAQLCGFLDSKKIRSSSTVFKVSFFR 173 (175)
Q Consensus 140 ~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f~ 173 (175)
..+.+-||.+|++++++++++|..|+|++..+|.
T Consensus 70 k~i~Idp~fKef~e~ike~di~fiVvSsGm~~fI 103 (220)
T COG4359 70 KDIKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFI 103 (220)
T ss_pred hhcccCccHHHHHHHHHHcCCCEEEEeCCCchHH
Confidence 4578899999999999999999999999998874
No 80
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=97.44 E-value=0.00058 Score=57.12 Aligned_cols=73 Identities=14% Similarity=0.147 Sum_probs=49.6
Q ss_pred CcceEEEeccccCccChhhHHHHHHHHcCChhHHHhhccCCCHHHHHHHHhcCChHHHHHHHHHHH-HHHHhcCCCCCCc
Q 030531 67 RLRGVVFDMDGTLTVPVIDFPAMYRAVLGEDEYKRVKAENPTGIDILHHIESWSPDLQRHAYQTIA-DFERQGLDRLQIM 145 (175)
Q Consensus 67 ~ikaVIFDmDGTLvDSe~~~~a~~~~~~g~~~~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~ 145 (175)
...++|||+|+|++|..++.... .+|.. . .++ +.+. ++. .....+.+
T Consensus 100 ~~dA~V~DIDET~LsN~pY~~~~---~~g~e--------~------------~~~-------~~w~~~Wv--~~~~ApAl 147 (275)
T TIGR01680 100 EKDTFLFNIDGTALSNIPYYKKH---GYGSE--------K------------FDS-------ELYDEEFV--NKGEAPAL 147 (275)
T ss_pred CCCEEEEECccccccCHHHHHHh---cCCCC--------c------------CCh-------hhhhHHHH--hcccCCCC
Confidence 35899999999999988754422 22321 0 111 0011 111 13567899
Q ss_pred hhHHHHHHHHHHCCCcEEEEcCCCCC
Q 030531 146 PGTAQLCGFLDSKKIRSSSTVFKVSF 171 (175)
Q Consensus 146 PG~~e~L~~Lk~~gi~laIaTs~~~~ 171 (175)
||+.++.+.++++|+++.++|+..+.
T Consensus 148 p~al~ly~~l~~~G~kIf~VSgR~e~ 173 (275)
T TIGR01680 148 PETLKNYNKLVSLGFKIIFLSGRLKD 173 (275)
T ss_pred hHHHHHHHHHHHCCCEEEEEeCCchh
Confidence 99999999999999999999988753
No 81
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=97.43 E-value=0.00082 Score=54.97 Aligned_cols=75 Identities=13% Similarity=0.089 Sum_probs=51.5
Q ss_pred CCcceEEEeccccCccChhhHHHHHHHHcCChhHHHhhccCCCHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCCCCc
Q 030531 66 TRLRGVVFDMDGTLTVPVIDFPAMYRAVLGEDEYKRVKAENPTGIDILHHIESWSPDLQRHAYQTIADFERQGLDRLQIM 145 (175)
Q Consensus 66 ~~ikaVIFDmDGTLvDSe~~~~a~~~~~~g~~~~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 145 (175)
....+||||+|-|++++.++.... .+|.. . .++. .+.++.. ....+.+
T Consensus 75 dg~~A~V~DIDET~LsN~py~~~~---~~g~~--------~------------~~~~-------~~~~wv~--~~~apai 122 (229)
T TIGR01675 75 DGMDAWIFDVDDTLLSNIPYYKKH---GYGTE--------K------------TDPT-------AFWLWLG--KGAAPAL 122 (229)
T ss_pred CCCcEEEEccccccccCHHHHHHh---ccCCC--------c------------CCHH-------HHHHHHH--cCCCCCC
Confidence 467899999999999999754432 22321 0 1110 0111111 2456899
Q ss_pred hhHHHHHHHHHHCCCcEEEEcCCCCCC
Q 030531 146 PGTAQLCGFLDSKKIRSSSTVFKVSFF 172 (175)
Q Consensus 146 PG~~e~L~~Lk~~gi~laIaTs~~~~f 172 (175)
||+.++++.|+++|+++.++|+.++..
T Consensus 123 p~al~l~~~l~~~G~~Vf~lTGR~e~~ 149 (229)
T TIGR01675 123 PEGLKLYQKIIELGIKIFLLSGRWEEL 149 (229)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCChHH
Confidence 999999999999999999999987643
No 82
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=97.39 E-value=0.00023 Score=64.64 Aligned_cols=27 Identities=11% Similarity=0.075 Sum_probs=25.3
Q ss_pred CchhHHHHHHHHHHCCCcEEEEcCCCC
Q 030531 144 IMPGTAQLCGFLDSKKIRSSSTVFKVS 170 (175)
Q Consensus 144 l~PG~~e~L~~Lk~~gi~laIaTs~~~ 170 (175)
++||+.+.|+.|+++|++++|+||+..
T Consensus 198 l~pgV~e~L~~L~~~Gy~IvIvTNQ~g 224 (526)
T TIGR01663 198 IFPEIPEKLKELEADGFKICIFTNQGG 224 (526)
T ss_pred cccCHHHHHHHHHHCCCEEEEEECCcc
Confidence 589999999999999999999999876
No 83
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=97.32 E-value=0.00018 Score=58.67 Aligned_cols=30 Identities=13% Similarity=0.208 Sum_probs=27.1
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEcCCCCC
Q 030531 142 LQIMPGTAQLCGFLDSKKIRSSSTVFKVSF 171 (175)
Q Consensus 142 ~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~ 171 (175)
.+.+||+.++++.++++|+.+.++||..+.
T Consensus 114 ~~aip~a~~l~~~~~~~G~~V~~iT~R~~~ 143 (229)
T PF03767_consen 114 APAIPGALELYNYARSRGVKVFFITGRPES 143 (229)
T ss_dssp GEEETTHHHHHHHHHHTTEEEEEEEEEETT
T ss_pred CcccHHHHHHHHHHHHCCCeEEEEecCCch
Confidence 378999999999999999999999987654
No 84
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.31 E-value=0.0016 Score=53.51 Aligned_cols=30 Identities=13% Similarity=-0.038 Sum_probs=26.1
Q ss_pred CCCCCchhHHHHHHHHHHCCCcEEEEcCCC
Q 030531 140 DRLQIMPGTAQLCGFLDSKKIRSSSTVFKV 169 (175)
Q Consensus 140 ~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~ 169 (175)
......+|+.++|+.|+++|..++++||--
T Consensus 110 ~~~~~~~~~~~~lq~lR~~g~~l~iisN~d 139 (237)
T KOG3085|consen 110 SAWKYLDGMQELLQKLRKKGTILGIISNFD 139 (237)
T ss_pred cCceeccHHHHHHHHHHhCCeEEEEecCCc
Confidence 356788999999999999999999999854
No 85
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=97.22 E-value=0.00061 Score=52.35 Aligned_cols=14 Identities=43% Similarity=0.508 Sum_probs=12.7
Q ss_pred eEEEeccccCccCh
Q 030531 70 GVVFDMDGTLTVPV 83 (175)
Q Consensus 70 aVIFDmDGTLvDSe 83 (175)
.|+||+||||+++.
T Consensus 1 iVisDIDGTL~~sd 14 (157)
T smart00775 1 IVISDIDGTITKSD 14 (157)
T ss_pred CEEEecCCCCcccc
Confidence 38999999999987
No 86
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=96.94 E-value=0.0036 Score=51.01 Aligned_cols=36 Identities=22% Similarity=0.196 Sum_probs=31.8
Q ss_pred CCCCCCchhHHHHHHHHHHCCC-cEEEEcCCCCCCcc
Q 030531 139 LDRLQIMPGTAQLCGFLDSKKI-RSSSTVFKVSFFRH 174 (175)
Q Consensus 139 ~~~~~l~PG~~e~L~~Lk~~gi-~laIaTs~~~~f~~ 174 (175)
...+++.||+.++++.+++.|. .+.|+|...++|.+
T Consensus 80 ~r~iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe 116 (256)
T KOG3120|consen 80 LRSIPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIE 116 (256)
T ss_pred HhcCCCCccHHHHHHHHHhCCCceEEEEecCchhHHH
Confidence 3578999999999999999885 99999999999865
No 87
>PRK06769 hypothetical protein; Validated
Probab=96.88 E-value=0.00075 Score=52.38 Aligned_cols=29 Identities=17% Similarity=0.104 Sum_probs=26.6
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEcCCCC
Q 030531 142 LQIMPGTAQLCGFLDSKKIRSSSTVFKVS 170 (175)
Q Consensus 142 ~~l~PG~~e~L~~Lk~~gi~laIaTs~~~ 170 (175)
+.++||+.++|+.|+++|++++|+||+..
T Consensus 27 ~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~ 55 (173)
T PRK06769 27 FTLFPFTKASLQKLKANHIKIFSFTNQPG 55 (173)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEECCch
Confidence 34799999999999999999999999875
No 88
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=96.85 E-value=0.0015 Score=54.81 Aligned_cols=34 Identities=9% Similarity=0.003 Sum_probs=30.7
Q ss_pred CCCCCchhHHHHHHHHHHCCCcEEEEcCCCCCCc
Q 030531 140 DRLQIMPGTAQLCGFLDSKKIRSSSTVFKVSFFR 173 (175)
Q Consensus 140 ~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f~ 173 (175)
..+.+.||+.++++.|+++|++++|+|++...+.
T Consensus 118 ~~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~I 151 (277)
T TIGR01544 118 SDVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVL 151 (277)
T ss_pred cCCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHH
Confidence 4789999999999999999999999999987543
No 89
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=96.59 E-value=0.0019 Score=50.00 Aligned_cols=28 Identities=11% Similarity=0.046 Sum_probs=26.0
Q ss_pred CchhHHHHHHHHHHCCCcEEEEcCCCCC
Q 030531 144 IMPGTAQLCGFLDSKKIRSSSTVFKVSF 171 (175)
Q Consensus 144 l~PG~~e~L~~Lk~~gi~laIaTs~~~~ 171 (175)
++||+.++|+.|+++|+++||+||++..
T Consensus 43 ~~pgv~e~L~~Lk~~G~~l~I~TN~~~~ 70 (166)
T TIGR01664 43 LYPEIPAKLQELDDEGYKIVIFTNQSGI 70 (166)
T ss_pred ecCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence 6899999999999999999999998764
No 90
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=96.58 E-value=0.002 Score=45.88 Aligned_cols=30 Identities=13% Similarity=0.029 Sum_probs=25.5
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEcCCCCC
Q 030531 142 LQIMPGTAQLCGFLDSKKIRSSSTVFKVSF 171 (175)
Q Consensus 142 ~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~ 171 (175)
-.++||+.|+|+.|+++|+++.++|||++.
T Consensus 13 ~~~ipga~e~l~~L~~~g~~~~~lTNns~~ 42 (101)
T PF13344_consen 13 NEPIPGAVEALDALRERGKPVVFLTNNSSR 42 (101)
T ss_dssp TEE-TTHHHHHHHHHHTTSEEEEEES-SSS
T ss_pred CCcCcCHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 457999999999999999999999999864
No 91
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=96.42 E-value=0.0025 Score=49.15 Aligned_cols=28 Identities=11% Similarity=-0.063 Sum_probs=26.0
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEcCCC
Q 030531 142 LQIMPGTAQLCGFLDSKKIRSSSTVFKV 169 (175)
Q Consensus 142 ~~l~PG~~e~L~~Lk~~gi~laIaTs~~ 169 (175)
+.++||+.++|+.|+++|++++|+||+.
T Consensus 28 ~~~~pgv~e~L~~L~~~g~~l~IvSN~~ 55 (161)
T TIGR01261 28 LRFEKGVIPALLKLKKAGYKFVMVTNQD 55 (161)
T ss_pred eeECCCHHHHHHHHHHCCCeEEEEeCCc
Confidence 4689999999999999999999999974
No 92
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=96.20 E-value=0.0025 Score=50.80 Aligned_cols=17 Identities=29% Similarity=0.643 Sum_probs=15.5
Q ss_pred CcceEEEeccccCccCh
Q 030531 67 RLRGVVFDMDGTLTVPV 83 (175)
Q Consensus 67 ~ikaVIFDmDGTLvDSe 83 (175)
++|.|+||+||||+|+.
T Consensus 2 ~~kli~~DlDGTLl~~~ 18 (230)
T PRK01158 2 KIKAIAIDIDGTITDKD 18 (230)
T ss_pred ceeEEEEecCCCcCCCC
Confidence 47999999999999886
No 93
>PTZ00174 phosphomannomutase; Provisional
Probab=95.95 E-value=0.0042 Score=50.73 Aligned_cols=18 Identities=44% Similarity=0.674 Sum_probs=16.2
Q ss_pred CCcceEEEeccccCccCh
Q 030531 66 TRLRGVVFDMDGTLTVPV 83 (175)
Q Consensus 66 ~~ikaVIFDmDGTLvDSe 83 (175)
+.+|.|+|||||||+|+.
T Consensus 3 ~~~klia~DlDGTLL~~~ 20 (247)
T PTZ00174 3 MKKTILLFDVDGTLTKPR 20 (247)
T ss_pred CCCeEEEEECcCCCcCCC
Confidence 458999999999999997
No 94
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=95.95 E-value=0.0026 Score=48.07 Aligned_cols=33 Identities=6% Similarity=0.047 Sum_probs=28.3
Q ss_pred CCCCCchhHHHHHHHHHHCCCcEEEEcCCCCCCc
Q 030531 140 DRLQIMPGTAQLCGFLDSKKIRSSSTVFKVSFFR 173 (175)
Q Consensus 140 ~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f~ 173 (175)
..+.++||+.|+|+.|+ +++++||+||+...++
T Consensus 42 ~~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~ 74 (148)
T smart00577 42 VYVKKRPGVDEFLKRAS-ELFELVVFTAGLRMYA 74 (148)
T ss_pred EEEEECCCHHHHHHHHH-hccEEEEEeCCcHHHH
Confidence 45678999999999998 5799999999987654
No 95
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=95.80 E-value=0.084 Score=47.87 Aligned_cols=18 Identities=33% Similarity=0.440 Sum_probs=14.8
Q ss_pred CCcceEEEeccccCccCh
Q 030531 66 TRLRGVVFDMDGTLTVPV 83 (175)
Q Consensus 66 ~~ikaVIFDmDGTLvDSe 83 (175)
..-+.++||+||||+.+.
T Consensus 20 ~~~~~~~FDfDGTLt~~~ 37 (497)
T PLN02177 20 RSNQTVAADLDGTLLISR 37 (497)
T ss_pred ccccEEEEecCCcccCCC
Confidence 335679999999999866
No 96
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=95.80 E-value=0.0047 Score=50.75 Aligned_cols=17 Identities=53% Similarity=0.714 Sum_probs=15.4
Q ss_pred CcceEEEeccccCccCh
Q 030531 67 RLRGVVFDMDGTLTVPV 83 (175)
Q Consensus 67 ~ikaVIFDmDGTLvDSe 83 (175)
|+|.|+|||||||+++.
T Consensus 1 m~kli~~DlDGTLl~~~ 17 (272)
T PRK15126 1 MARLAAFDMDGTLLMPD 17 (272)
T ss_pred CccEEEEeCCCcCcCCC
Confidence 47999999999999986
No 97
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=95.77 E-value=0.0048 Score=50.28 Aligned_cols=17 Identities=41% Similarity=0.712 Sum_probs=15.4
Q ss_pred CcceEEEeccccCccCh
Q 030531 67 RLRGVVFDMDGTLTVPV 83 (175)
Q Consensus 67 ~ikaVIFDmDGTLvDSe 83 (175)
++|.|+||+||||+++.
T Consensus 2 ~~kli~~DlDGTLl~~~ 18 (272)
T PRK10530 2 TYRVIALDLDGTLLTPK 18 (272)
T ss_pred CccEEEEeCCCceECCC
Confidence 48999999999999986
No 98
>PRK10976 putative hydrolase; Provisional
Probab=95.76 E-value=0.005 Score=50.33 Aligned_cols=17 Identities=41% Similarity=0.489 Sum_probs=15.3
Q ss_pred CcceEEEeccccCccCh
Q 030531 67 RLRGVVFDMDGTLTVPV 83 (175)
Q Consensus 67 ~ikaVIFDmDGTLvDSe 83 (175)
++|.|++||||||+|+.
T Consensus 1 mikli~~DlDGTLl~~~ 17 (266)
T PRK10976 1 MYQVVASDLDGTLLSPD 17 (266)
T ss_pred CceEEEEeCCCCCcCCC
Confidence 37899999999999986
No 99
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=95.70 E-value=0.0057 Score=45.58 Aligned_cols=15 Identities=33% Similarity=0.747 Sum_probs=13.4
Q ss_pred cceEEEeccccCccC
Q 030531 68 LRGVVFDMDGTLTVP 82 (175)
Q Consensus 68 ikaVIFDmDGTLvDS 82 (175)
+|+|+||+||||++.
T Consensus 1 ~K~i~~DiDGTL~~~ 15 (126)
T TIGR01689 1 MKRLVMDLDNTITLT 15 (126)
T ss_pred CCEEEEeCCCCcccC
Confidence 479999999999986
No 100
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=95.68 E-value=0.0062 Score=52.63 Aligned_cols=34 Identities=6% Similarity=-0.153 Sum_probs=30.1
Q ss_pred CCCCCchhHHHHHHHHHHCCCcEEEEcCCCCCCc
Q 030531 140 DRLQIMPGTAQLCGFLDSKKIRSSSTVFKVSFFR 173 (175)
Q Consensus 140 ~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f~ 173 (175)
..+...||+.++|+.|+++|++++|+||+...|+
T Consensus 181 ~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt 214 (343)
T TIGR02244 181 KYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYT 214 (343)
T ss_pred HHhccchhHHHHHHHHHHCCCeEEEEeCCCHHHH
Confidence 3466799999999999999999999999987765
No 101
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=95.61 E-value=0.006 Score=49.84 Aligned_cols=19 Identities=32% Similarity=0.438 Sum_probs=16.8
Q ss_pred CCcceEEEeccccCccChh
Q 030531 66 TRLRGVVFDMDGTLTVPVI 84 (175)
Q Consensus 66 ~~ikaVIFDmDGTLvDSe~ 84 (175)
+++|.|+|||||||+++..
T Consensus 1 ~~~kli~~DlDGTLl~~~~ 19 (264)
T COG0561 1 MMIKLLAFDLDGTLLDSNK 19 (264)
T ss_pred CCeeEEEEcCCCCccCCCC
Confidence 3689999999999999983
No 102
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=95.59 E-value=0.016 Score=44.78 Aligned_cols=28 Identities=7% Similarity=-0.074 Sum_probs=26.1
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEcCCC
Q 030531 142 LQIMPGTAQLCGFLDSKKIRSSSTVFKV 169 (175)
Q Consensus 142 ~~l~PG~~e~L~~Lk~~gi~laIaTs~~ 169 (175)
..++||+.|+|+.|+++|++++|+||+.
T Consensus 42 ~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~ 69 (170)
T TIGR01668 42 NEAYPALRDWIEELKAAGRKLLIVSNNA 69 (170)
T ss_pred CCcChhHHHHHHHHHHcCCEEEEEeCCc
Confidence 4679999999999999999999999987
No 103
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=95.56 E-value=0.0065 Score=49.66 Aligned_cols=17 Identities=41% Similarity=0.720 Sum_probs=15.4
Q ss_pred CcceEEEeccccCccCh
Q 030531 67 RLRGVVFDMDGTLTVPV 83 (175)
Q Consensus 67 ~ikaVIFDmDGTLvDSe 83 (175)
++|.|+|||||||+++.
T Consensus 2 ~~kli~~DlDGTLl~~~ 18 (270)
T PRK10513 2 AIKLIAIDMDGTLLLPD 18 (270)
T ss_pred ceEEEEEecCCcCcCCC
Confidence 48999999999999986
No 104
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=95.50 E-value=0.046 Score=45.30 Aligned_cols=15 Identities=40% Similarity=0.481 Sum_probs=12.8
Q ss_pred cceEEEeccccCccC
Q 030531 68 LRGVVFDMDGTLTVP 82 (175)
Q Consensus 68 ikaVIFDmDGTLvDS 82 (175)
-.+|+||+||||++.
T Consensus 14 ~~li~~D~DGTLl~~ 28 (266)
T PRK10187 14 NYAWFFDLDGTLAEI 28 (266)
T ss_pred CEEEEEecCCCCCCC
Confidence 368899999999975
No 105
>PLN02423 phosphomannomutase
Probab=95.49 E-value=0.008 Score=49.22 Aligned_cols=18 Identities=44% Similarity=0.711 Sum_probs=14.8
Q ss_pred CCcceEE-EeccccCccCh
Q 030531 66 TRLRGVV-FDMDGTLTVPV 83 (175)
Q Consensus 66 ~~ikaVI-FDmDGTLvDSe 83 (175)
+++|+++ |||||||+|+.
T Consensus 4 ~~~~~i~~~D~DGTLl~~~ 22 (245)
T PLN02423 4 RKPGVIALFDVDGTLTAPR 22 (245)
T ss_pred CccceEEEEeccCCCcCCC
Confidence 4566666 99999999987
No 106
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=95.45 E-value=0.0074 Score=47.87 Aligned_cols=16 Identities=50% Similarity=0.762 Sum_probs=14.4
Q ss_pred cceEEEeccccCccCh
Q 030531 68 LRGVVFDMDGTLTVPV 83 (175)
Q Consensus 68 ikaVIFDmDGTLvDSe 83 (175)
+|.|++||||||+|..
T Consensus 1 ik~v~~DlDGTLl~~~ 16 (215)
T TIGR01487 1 IKLVAIDIDGTLTEPN 16 (215)
T ss_pred CcEEEEecCCCcCCCC
Confidence 5789999999999875
No 107
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=95.28 E-value=0.013 Score=50.90 Aligned_cols=29 Identities=17% Similarity=0.145 Sum_probs=26.6
Q ss_pred CCCCCchhHHHHHHHHHHCCCcEEEEcCC
Q 030531 140 DRLQIMPGTAQLCGFLDSKKIRSSSTVFK 168 (175)
Q Consensus 140 ~~~~l~PG~~e~L~~Lk~~gi~laIaTs~ 168 (175)
+.+.++||+.++|+.|+++|++++|+||+
T Consensus 27 ~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq 55 (354)
T PRK05446 27 DKLAFEPGVIPALLKLQKAGYKLVMVTNQ 55 (354)
T ss_pred ccceECcCHHHHHHHHHhCCCeEEEEECC
Confidence 34789999999999999999999999995
No 108
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=95.24 E-value=0.0096 Score=49.17 Aligned_cols=18 Identities=33% Similarity=0.156 Sum_probs=15.8
Q ss_pred CCcceEEEeccccCccCh
Q 030531 66 TRLRGVVFDMDGTLTVPV 83 (175)
Q Consensus 66 ~~ikaVIFDmDGTLvDSe 83 (175)
.|+|.|++|+||||+|+.
T Consensus 2 ~~~kli~~DlDGTLl~~~ 19 (273)
T PRK00192 2 MMKLLVFTDLDGTLLDHH 19 (273)
T ss_pred CcceEEEEcCcccCcCCC
Confidence 468999999999999964
No 109
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=95.11 E-value=0.014 Score=49.73 Aligned_cols=15 Identities=40% Similarity=0.594 Sum_probs=13.8
Q ss_pred eEEEeccccCccChh
Q 030531 70 GVVFDMDGTLTVPVI 84 (175)
Q Consensus 70 aVIFDmDGTLvDSe~ 84 (175)
+|||||||||++++.
T Consensus 2 ~~ifD~DGvL~~g~~ 16 (321)
T TIGR01456 2 GFAFDIDGVLFRGKK 16 (321)
T ss_pred EEEEeCcCceECCcc
Confidence 689999999999984
No 110
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=95.05 E-value=0.0096 Score=45.25 Aligned_cols=15 Identities=40% Similarity=0.658 Sum_probs=13.6
Q ss_pred cceEEEeccccCccC
Q 030531 68 LRGVVFDMDGTLTVP 82 (175)
Q Consensus 68 ikaVIFDmDGTLvDS 82 (175)
+|+|+||+||||+|.
T Consensus 1 ~~~~~~D~Dgtl~~~ 15 (154)
T TIGR01670 1 IRLLILDVDGVLTDG 15 (154)
T ss_pred CeEEEEeCceeEEcC
Confidence 589999999999994
No 111
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=95.04 E-value=0.011 Score=46.32 Aligned_cols=17 Identities=24% Similarity=0.472 Sum_probs=15.4
Q ss_pred CCcceEEEeccccCccC
Q 030531 66 TRLRGVVFDMDGTLTVP 82 (175)
Q Consensus 66 ~~ikaVIFDmDGTLvDS 82 (175)
..+|+|+||+||||+|.
T Consensus 19 ~~ikli~~D~Dgtl~~~ 35 (183)
T PRK09484 19 ENIRLLICDVDGVFSDG 35 (183)
T ss_pred hCceEEEEcCCeeeecC
Confidence 35999999999999986
No 112
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=94.71 E-value=0.015 Score=45.31 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=16.6
Q ss_pred CCCcceEEEeccccCccCh
Q 030531 65 KTRLRGVVFDMDGTLTVPV 83 (175)
Q Consensus 65 ~~~ikaVIFDmDGTLvDSe 83 (175)
.+.+|++|||+||||.|-.
T Consensus 4 ~~~i~~~v~d~dGv~tdg~ 22 (169)
T TIGR02726 4 AKNIKLVILDVDGVMTDGR 22 (169)
T ss_pred cccCeEEEEeCceeeECCe
Confidence 3459999999999999984
No 113
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=94.69 E-value=0.018 Score=47.42 Aligned_cols=18 Identities=28% Similarity=0.211 Sum_probs=15.9
Q ss_pred CCcceEEEeccccCccCh
Q 030531 66 TRLRGVVFDMDGTLTVPV 83 (175)
Q Consensus 66 ~~ikaVIFDmDGTLvDSe 83 (175)
..++.|++||||||+|+.
T Consensus 5 ~~~~lI~~DlDGTLL~~~ 22 (271)
T PRK03669 5 QDPLLIFTDLDGTLLDSH 22 (271)
T ss_pred CCCeEEEEeCccCCcCCC
Confidence 458899999999999985
No 114
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=94.44 E-value=0.038 Score=45.97 Aligned_cols=33 Identities=6% Similarity=-0.074 Sum_probs=29.6
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEcCCCCCCc
Q 030531 141 RLQIMPGTAQLCGFLDSKKIRSSSTVFKVSFFR 173 (175)
Q Consensus 141 ~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f~ 173 (175)
...++||+.++|+.|+++|++++|+||++..+.
T Consensus 185 ~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~ 217 (300)
T PHA02530 185 EDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCE 217 (300)
T ss_pred cCCCChhHHHHHHHHHhCCCEEEEEeCCChhhH
Confidence 457899999999999999999999999987654
No 115
>PLN02887 hydrolase family protein
Probab=94.37 E-value=0.023 Score=52.44 Aligned_cols=19 Identities=37% Similarity=0.496 Sum_probs=16.9
Q ss_pred CCCcceEEEeccccCccCh
Q 030531 65 KTRLRGVVFDMDGTLTVPV 83 (175)
Q Consensus 65 ~~~ikaVIFDmDGTLvDSe 83 (175)
.+++|.|+|||||||+|+.
T Consensus 305 ~~~iKLIa~DLDGTLLn~d 323 (580)
T PLN02887 305 KPKFSYIFCDMDGTLLNSK 323 (580)
T ss_pred ccCccEEEEeCCCCCCCCC
Confidence 3579999999999999986
No 116
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=94.26 E-value=0.018 Score=45.57 Aligned_cols=13 Identities=54% Similarity=0.779 Sum_probs=11.8
Q ss_pred EEEeccccCccCh
Q 030531 71 VVFDMDGTLTVPV 83 (175)
Q Consensus 71 VIFDmDGTLvDSe 83 (175)
|+|||||||+|+.
T Consensus 1 i~~DlDGTLl~~~ 13 (225)
T TIGR01482 1 IASDIDGTLTDPN 13 (225)
T ss_pred CeEeccCccCCCC
Confidence 5899999999986
No 117
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=94.24 E-value=0.017 Score=44.32 Aligned_cols=33 Identities=3% Similarity=-0.110 Sum_probs=28.7
Q ss_pred CCCCCchhHHHHHHHHHHCCCcEEEEcCCCCCCc
Q 030531 140 DRLQIMPGTAQLCGFLDSKKIRSSSTVFKVSFFR 173 (175)
Q Consensus 140 ~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f~ 173 (175)
..+.++||+.|+|+.|++ ++.++|+|++.+.++
T Consensus 55 ~~v~~rPgv~efL~~l~~-~yel~I~T~~~~~yA 87 (156)
T TIGR02250 55 YLTKLRPFLHEFLKEASK-LYEMHVYTMGTRAYA 87 (156)
T ss_pred EEEEECCCHHHHHHHHHh-hcEEEEEeCCcHHHH
Confidence 456789999999999985 499999999998765
No 118
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=94.14 E-value=0.024 Score=47.03 Aligned_cols=28 Identities=7% Similarity=0.051 Sum_probs=24.1
Q ss_pred CchhHHHHHHHHHHCCCcEEEEcCCCCCC
Q 030531 144 IMPGTAQLCGFLDSKKIRSSSTVFKVSFF 172 (175)
Q Consensus 144 l~PG~~e~L~~Lk~~gi~laIaTs~~~~f 172 (175)
-++|+.++++.|+++|+ ++|+||+...+
T Consensus 144 ~y~~i~~~l~~L~~~g~-~~i~Tn~d~~~ 171 (279)
T TIGR01452 144 SYAKLREACAHLREPGC-LFVATNRDPWH 171 (279)
T ss_pred CHHHHHHHHHHHhcCCC-EEEEeCCCCCC
Confidence 48999999999998887 89999987644
No 119
>PRK10444 UMP phosphatase; Provisional
Probab=94.06 E-value=0.025 Score=46.51 Aligned_cols=16 Identities=31% Similarity=0.596 Sum_probs=14.8
Q ss_pred cceEEEeccccCccCh
Q 030531 68 LRGVVFDMDGTLTVPV 83 (175)
Q Consensus 68 ikaVIFDmDGTLvDSe 83 (175)
||+|+||+||||+++.
T Consensus 1 ~~~v~~DlDGtL~~~~ 16 (248)
T PRK10444 1 IKNVICDIDGVLMHDN 16 (248)
T ss_pred CcEEEEeCCCceEeCC
Confidence 5899999999999996
No 120
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=93.93 E-value=0.031 Score=43.14 Aligned_cols=17 Identities=35% Similarity=0.565 Sum_probs=14.8
Q ss_pred CcceEEEeccccCccCh
Q 030531 67 RLRGVVFDMDGTLTVPV 83 (175)
Q Consensus 67 ~ikaVIFDmDGTLvDSe 83 (175)
..|.++||+||||+++.
T Consensus 12 ~~k~~~~D~Dgtl~~~~ 28 (166)
T TIGR01664 12 QSKVAAFDLDGTLITTR 28 (166)
T ss_pred cCcEEEEeCCCceEecC
Confidence 47899999999999864
No 121
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=93.67 E-value=0.41 Score=43.38 Aligned_cols=18 Identities=33% Similarity=0.381 Sum_probs=14.8
Q ss_pred CCcceEEEeccccCccCh
Q 030531 66 TRLRGVVFDMDGTLTVPV 83 (175)
Q Consensus 66 ~~ikaVIFDmDGTLvDSe 83 (175)
+..+.|+||+||||+-|.
T Consensus 6 ~~~~~~~fD~DGTLlrs~ 23 (498)
T PLN02499 6 TTSYSVVSELEGTLLKDA 23 (498)
T ss_pred cccceEEEecccceecCC
Confidence 345679999999999865
No 122
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=93.57 E-value=0.038 Score=43.50 Aligned_cols=13 Identities=38% Similarity=0.506 Sum_probs=12.0
Q ss_pred EEEeccccCccCh
Q 030531 71 VVFDMDGTLTVPV 83 (175)
Q Consensus 71 VIFDmDGTLvDSe 83 (175)
|++|+||||+++.
T Consensus 1 i~~DlDGTLl~~~ 13 (254)
T PF08282_consen 1 IFSDLDGTLLNSD 13 (254)
T ss_dssp EEEECCTTTCSTT
T ss_pred cEEEECCceecCC
Confidence 6899999999987
No 123
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=93.46 E-value=0.86 Score=36.44 Aligned_cols=31 Identities=10% Similarity=-0.047 Sum_probs=27.8
Q ss_pred CCCCCCchhHHHHHHHHHHCCCcEEEEcCCC
Q 030531 139 LDRLQIMPGTAQLCGFLDSKKIRSSSTVFKV 169 (175)
Q Consensus 139 ~~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~ 169 (175)
.-..+++|++.+.|+..++.|+++-|-||++
T Consensus 99 elkahlypDav~~ik~wk~~g~~vyiYSSGS 129 (229)
T COG4229 99 ELKAHLYPDAVQAIKRWKALGMRVYIYSSGS 129 (229)
T ss_pred ccccccCHhHHHHHHHHHHcCCcEEEEcCCC
Confidence 3467899999999999999999999999875
No 124
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=93.42 E-value=0.042 Score=46.68 Aligned_cols=16 Identities=31% Similarity=0.360 Sum_probs=14.1
Q ss_pred cceEEEeccccCccCh
Q 030531 68 LRGVVFDMDGTLTVPV 83 (175)
Q Consensus 68 ikaVIFDmDGTLvDSe 83 (175)
+|.|++||||||+|+.
T Consensus 1 ~KLIftDLDGTLLd~~ 16 (302)
T PRK12702 1 MRLVLSSLDGSLLDLE 16 (302)
T ss_pred CcEEEEeCCCCCcCCC
Confidence 4789999999999965
No 125
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=93.30 E-value=0.041 Score=45.06 Aligned_cols=16 Identities=31% Similarity=0.588 Sum_probs=14.7
Q ss_pred cceEEEeccccCccCh
Q 030531 68 LRGVVFDMDGTLTVPV 83 (175)
Q Consensus 68 ikaVIFDmDGTLvDSe 83 (175)
+|+++||+||||++..
T Consensus 1 ~~~~~~D~DGtl~~~~ 16 (249)
T TIGR01457 1 YKGYLIDLDGTMYKGK 16 (249)
T ss_pred CCEEEEeCCCceEcCC
Confidence 5799999999999997
No 126
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=93.27 E-value=0.18 Score=41.74 Aligned_cols=31 Identities=10% Similarity=0.158 Sum_probs=27.1
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEcCCCCC
Q 030531 141 RLQIMPGTAQLCGFLDSKKIRSSSTVFKVSF 171 (175)
Q Consensus 141 ~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~ 171 (175)
...++||+.|||++.-++|..+--+||....
T Consensus 120 ~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~ 150 (274)
T COG2503 120 KSKAVPGAVEFLNYVNSNGGKIFYISNRDQE 150 (274)
T ss_pred ccccCccHHHHHHHHHhcCcEEEEEeccchh
Confidence 4568999999999999999999999987653
No 127
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=93.25 E-value=0.036 Score=41.83 Aligned_cols=16 Identities=38% Similarity=0.619 Sum_probs=13.2
Q ss_pred ceEEEeccccCccChh
Q 030531 69 RGVVFDMDGTLTVPVI 84 (175)
Q Consensus 69 kaVIFDmDGTLvDSe~ 84 (175)
|.+|||+||||+++..
T Consensus 1 k~LVlDLD~TLv~~~~ 16 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSS 16 (159)
T ss_dssp EEEEEE-CTTTEEEES
T ss_pred CEEEEeCCCcEEEEee
Confidence 5799999999999983
No 128
>PLN02645 phosphoglycolate phosphatase
Probab=92.69 E-value=0.052 Score=45.94 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=16.2
Q ss_pred CCcceEEEeccccCccCh
Q 030531 66 TRLRGVVFDMDGTLTVPV 83 (175)
Q Consensus 66 ~~ikaVIFDmDGTLvDSe 83 (175)
..+|+|+||+||||++..
T Consensus 26 ~~~~~~~~D~DGtl~~~~ 43 (311)
T PLN02645 26 DSVETFIFDCDGVIWKGD 43 (311)
T ss_pred HhCCEEEEeCcCCeEeCC
Confidence 368999999999999976
No 129
>PLN02645 phosphoglycolate phosphatase
Probab=92.60 E-value=0.13 Score=43.46 Aligned_cols=30 Identities=10% Similarity=0.034 Sum_probs=27.2
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEcCCCCC
Q 030531 142 LQIMPGTAQLCGFLDSKKIRSSSTVFKVSF 171 (175)
Q Consensus 142 ~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~ 171 (175)
-.++||+.|+|+.|+++|+++.++||++..
T Consensus 43 ~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~ 72 (311)
T PLN02645 43 DKLIEGVPETLDMLRSMGKKLVFVTNNSTK 72 (311)
T ss_pred CccCcCHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 368899999999999999999999998854
No 130
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=92.55 E-value=0.056 Score=44.50 Aligned_cols=30 Identities=10% Similarity=-0.058 Sum_probs=26.5
Q ss_pred CchhHHHHHHHHHHCCCcEEEEcCCCCCCc
Q 030531 144 IMPGTAQLCGFLDSKKIRSSSTVFKVSFFR 173 (175)
Q Consensus 144 l~PG~~e~L~~Lk~~gi~laIaTs~~~~f~ 173 (175)
.++++.+.++.|++.+++++|+||+.+.+.
T Consensus 121 ~y~~l~~a~~~L~~~~~~~~iatn~~~~~~ 150 (257)
T TIGR01458 121 SYQILNQAFRLLLDGAKPLLIAIGKGRYYK 150 (257)
T ss_pred CHHHHHHHHHHHHcCCCCEEEEeCCCCCCc
Confidence 478999999999999999999999887764
No 131
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=92.54 E-value=0.057 Score=41.86 Aligned_cols=20 Identities=25% Similarity=0.479 Sum_probs=17.6
Q ss_pred CCCcceEEEeccccCccChh
Q 030531 65 KTRLRGVVFDMDGTLTVPVI 84 (175)
Q Consensus 65 ~~~ikaVIFDmDGTLvDSe~ 84 (175)
..++|.+|||.||||.|-..
T Consensus 5 a~~IkLli~DVDGvLTDG~l 24 (170)
T COG1778 5 AKNIKLLILDVDGVLTDGKL 24 (170)
T ss_pred hhhceEEEEeccceeecCeE
Confidence 46799999999999999873
No 132
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=92.49 E-value=0.06 Score=43.71 Aligned_cols=14 Identities=36% Similarity=0.430 Sum_probs=12.4
Q ss_pred eEEEeccccCccCh
Q 030531 70 GVVFDMDGTLTVPV 83 (175)
Q Consensus 70 aVIFDmDGTLvDSe 83 (175)
.|+|||||||++..
T Consensus 1 li~~DlDGTLl~~~ 14 (256)
T TIGR00099 1 LIFIDLDGTLLNDD 14 (256)
T ss_pred CEEEeCCCCCCCCC
Confidence 37899999999985
No 133
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=92.38 E-value=0.064 Score=38.05 Aligned_cols=13 Identities=38% Similarity=0.611 Sum_probs=12.0
Q ss_pred EEEeccccCccCh
Q 030531 71 VVFDMDGTLTVPV 83 (175)
Q Consensus 71 VIFDmDGTLvDSe 83 (175)
++||+||||++..
T Consensus 1 ~l~D~dGvl~~g~ 13 (101)
T PF13344_consen 1 FLFDLDGVLYNGN 13 (101)
T ss_dssp EEEESTTTSEETT
T ss_pred CEEeCccEeEeCC
Confidence 6899999999987
No 134
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=92.38 E-value=0.064 Score=42.51 Aligned_cols=14 Identities=43% Similarity=0.387 Sum_probs=12.2
Q ss_pred eEEEeccccCccCh
Q 030531 70 GVVFDMDGTLTVPV 83 (175)
Q Consensus 70 aVIFDmDGTLvDSe 83 (175)
.|++||||||+|+.
T Consensus 1 ~i~~DlDGTLL~~~ 14 (221)
T TIGR02463 1 WVFSDLDGTLLDSH 14 (221)
T ss_pred CEEEeCCCCCcCCC
Confidence 37899999999975
No 135
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=91.80 E-value=0.068 Score=43.38 Aligned_cols=14 Identities=36% Similarity=0.572 Sum_probs=12.7
Q ss_pred EEEeccccCccChh
Q 030531 71 VVFDMDGTLTVPVI 84 (175)
Q Consensus 71 VIFDmDGTLvDSe~ 84 (175)
|+||+||||+|++.
T Consensus 1 ~lfD~DGvL~~~~~ 14 (236)
T TIGR01460 1 FLFDIDGVLWLGHK 14 (236)
T ss_pred CEEeCcCccCcCCc
Confidence 68999999999984
No 136
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=91.75 E-value=0.11 Score=48.65 Aligned_cols=20 Identities=35% Similarity=0.393 Sum_probs=16.4
Q ss_pred CCCCcceEEEeccccCccCh
Q 030531 64 PKTRLRGVVFDMDGTLTVPV 83 (175)
Q Consensus 64 ~~~~ikaVIFDmDGTLvDSe 83 (175)
..+..|.|++|+||||+|+.
T Consensus 412 ~~~~~KLIfsDLDGTLLd~d 431 (694)
T PRK14502 412 SGQFKKIVYTDLDGTLLNPL 431 (694)
T ss_pred cCceeeEEEEECcCCCcCCC
Confidence 34457899999999999975
No 137
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=91.45 E-value=0.09 Score=42.45 Aligned_cols=14 Identities=43% Similarity=0.577 Sum_probs=11.9
Q ss_pred eEEEeccccCccCh
Q 030531 70 GVVFDMDGTLTVPV 83 (175)
Q Consensus 70 aVIFDmDGTLvDSe 83 (175)
.|+|||||||++..
T Consensus 1 li~~DlDGTLl~~~ 14 (225)
T TIGR02461 1 VIFTDLDGTLLPPG 14 (225)
T ss_pred CEEEeCCCCCcCCC
Confidence 37899999999954
No 138
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=91.26 E-value=0.088 Score=40.43 Aligned_cols=32 Identities=3% Similarity=-0.105 Sum_probs=28.2
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEcCCCCCCc
Q 030531 141 RLQIMPGTAQLCGFLDSKKIRSSSTVFKVSFFR 173 (175)
Q Consensus 141 ~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f~ 173 (175)
.+...||+.|+|+.|.+. +.++|.|++.+.|+
T Consensus 40 ~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA 71 (162)
T TIGR02251 40 YVFKRPHVDEFLERVSKW-YELVIFTASLEEYA 71 (162)
T ss_pred EEEECCCHHHHHHHHHhc-CEEEEEcCCcHHHH
Confidence 456799999999999987 99999999988765
No 139
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=91.08 E-value=0.1 Score=40.03 Aligned_cols=15 Identities=40% Similarity=0.596 Sum_probs=11.2
Q ss_pred ceEEEeccccCccCh
Q 030531 69 RGVVFDMDGTLTVPV 83 (175)
Q Consensus 69 kaVIFDmDGTLvDSe 83 (175)
|.+.||+||||+.+.
T Consensus 1 Kia~fD~DgTLi~~~ 15 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTK 15 (159)
T ss_dssp SEEEE-SCTTTEE-S
T ss_pred CEEEEeCCCCccCCC
Confidence 467899999999886
No 140
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=90.89 E-value=0.12 Score=40.44 Aligned_cols=14 Identities=50% Similarity=0.738 Sum_probs=12.1
Q ss_pred eEEEeccccCccCh
Q 030531 70 GVVFDMDGTLTVPV 83 (175)
Q Consensus 70 aVIFDmDGTLvDSe 83 (175)
.|+||+||||+++.
T Consensus 1 li~~D~DgTL~~~~ 14 (204)
T TIGR01484 1 LLFFDLDGTLLDPN 14 (204)
T ss_pred CEEEeCcCCCcCCC
Confidence 37899999999875
No 141
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=90.74 E-value=0.11 Score=42.30 Aligned_cols=15 Identities=40% Similarity=0.428 Sum_probs=12.8
Q ss_pred eEEEeccccCccChh
Q 030531 70 GVVFDMDGTLTVPVI 84 (175)
Q Consensus 70 aVIFDmDGTLvDSe~ 84 (175)
.|++||||||+++..
T Consensus 1 li~~DlDGTll~~~~ 15 (256)
T TIGR01486 1 WIFTDLDGTLLDPHG 15 (256)
T ss_pred CEEEcCCCCCcCCCC
Confidence 378999999999863
No 142
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=90.14 E-value=0.29 Score=38.42 Aligned_cols=28 Identities=11% Similarity=-0.027 Sum_probs=18.7
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEcCCCC
Q 030531 142 LQIMPGTAQLCGFLDSKKIRSSSTVFKVS 170 (175)
Q Consensus 142 ~~l~PG~~e~L~~Lk~~gi~laIaTs~~~ 170 (175)
..+-.++...|..++++. +++-+|+..+
T Consensus 71 ~l~~q~v~~~L~~~~e~~-~L~~itar~~ 98 (194)
T COG5663 71 ALLAQLVKQVLPSLKEEH-RLIYITARKA 98 (194)
T ss_pred HHHHHHHHHHhHHHHhhc-eeeeeehhhH
Confidence 445567888888888864 5666665433
No 143
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=89.64 E-value=0.14 Score=42.85 Aligned_cols=19 Identities=32% Similarity=0.532 Sum_probs=16.7
Q ss_pred CCcceEEEeccccCccChh
Q 030531 66 TRLRGVVFDMDGTLTVPVI 84 (175)
Q Consensus 66 ~~ikaVIFDmDGTLvDSe~ 84 (175)
..+++++||+||||++...
T Consensus 6 ~~y~~~l~DlDGvl~~G~~ 24 (269)
T COG0647 6 DKYDGFLFDLDGVLYRGNE 24 (269)
T ss_pred hhcCEEEEcCcCceEeCCc
Confidence 4689999999999999873
No 144
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=89.54 E-value=0.34 Score=44.21 Aligned_cols=32 Identities=16% Similarity=0.009 Sum_probs=28.7
Q ss_pred CCCCchhHHHHHHHHHHCC-CcEEEEcCCCCCC
Q 030531 141 RLQIMPGTAQLCGFLDSKK-IRSSSTVFKVSFF 172 (175)
Q Consensus 141 ~~~l~PG~~e~L~~Lk~~g-i~laIaTs~~~~f 172 (175)
..+++||+.|+|+.|+++| ++++|+||+....
T Consensus 382 ~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~ 414 (556)
T TIGR01525 382 RDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSA 414 (556)
T ss_pred cccchHhHHHHHHHHHHcCCCeEEEEeCCCHHH
Confidence 4679999999999999999 9999999987653
No 145
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=89.25 E-value=0.18 Score=40.47 Aligned_cols=15 Identities=27% Similarity=0.175 Sum_probs=12.7
Q ss_pred eEEEeccccCccChh
Q 030531 70 GVVFDMDGTLTVPVI 84 (175)
Q Consensus 70 aVIFDmDGTLvDSe~ 84 (175)
+|++||||||+|+..
T Consensus 1 li~~DlDgTLl~~~~ 15 (236)
T TIGR02471 1 LIITDLDNTLLGDDE 15 (236)
T ss_pred CeEEeccccccCCHH
Confidence 378899999999863
No 146
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=88.66 E-value=0.41 Score=43.56 Aligned_cols=32 Identities=13% Similarity=-0.047 Sum_probs=28.4
Q ss_pred CCCCchhHHHHHHHHHHCCC-cEEEEcCCCCCC
Q 030531 141 RLQIMPGTAQLCGFLDSKKI-RSSSTVFKVSFF 172 (175)
Q Consensus 141 ~~~l~PG~~e~L~~Lk~~gi-~laIaTs~~~~f 172 (175)
..+++||+.|+|+.|+++|+ +++|+||+....
T Consensus 360 ~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~ 392 (536)
T TIGR01512 360 SDEPRPDAAEAIAELKALGIEKVVMLTGDRRAV 392 (536)
T ss_pred eccchHHHHHHHHHHHHcCCCcEEEEcCCCHHH
Confidence 45789999999999999999 999999987643
No 147
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=88.42 E-value=0.24 Score=40.20 Aligned_cols=15 Identities=47% Similarity=0.658 Sum_probs=13.0
Q ss_pred cceEEEeccccCccC
Q 030531 68 LRGVVFDMDGTLTVP 82 (175)
Q Consensus 68 ikaVIFDmDGTLvDS 82 (175)
-++++||+||||+..
T Consensus 3 ~~~l~lD~DGTL~~~ 17 (244)
T TIGR00685 3 KRAFFFDYDGTLSEI 17 (244)
T ss_pred cEEEEEecCccccCC
Confidence 468999999999974
No 148
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=88.24 E-value=0.26 Score=38.44 Aligned_cols=19 Identities=42% Similarity=0.742 Sum_probs=15.9
Q ss_pred CCCcceEEEeccccCccCh
Q 030531 65 KTRLRGVVFDMDGTLTVPV 83 (175)
Q Consensus 65 ~~~ikaVIFDmDGTLvDSe 83 (175)
...+|+||||.|+||+.-.
T Consensus 38 ~~Gik~li~DkDNTL~~~~ 56 (168)
T PF09419_consen 38 KKGIKALIFDKDNTLTPPY 56 (168)
T ss_pred hcCceEEEEcCCCCCCCCC
Confidence 4569999999999998554
No 149
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=88.02 E-value=0.53 Score=43.15 Aligned_cols=32 Identities=13% Similarity=0.010 Sum_probs=28.3
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEcCCCCCC
Q 030531 141 RLQIMPGTAQLCGFLDSKKIRSSSTVFKVSFF 172 (175)
Q Consensus 141 ~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f 172 (175)
..+++||+.++|+.|+++|++++|+||+.+..
T Consensus 403 ~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~ 434 (562)
T TIGR01511 403 EDQLRPEAKEVIQALKRRGIEPVMLTGDNRKT 434 (562)
T ss_pred cccccHHHHHHHHHHHHcCCeEEEEcCCCHHH
Confidence 45689999999999999999999999987643
No 150
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=87.57 E-value=0.31 Score=39.43 Aligned_cols=28 Identities=11% Similarity=-0.016 Sum_probs=24.3
Q ss_pred chhHHHHHHHHHHCCCcEEEEcCCCCCCc
Q 030531 145 MPGTAQLCGFLDSKKIRSSSTVFKVSFFR 173 (175)
Q Consensus 145 ~PG~~e~L~~Lk~~gi~laIaTs~~~~f~ 173 (175)
+||+.++++.|+++|+++ |+||+...+.
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~~ 167 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRGIN 167 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEecc
Confidence 689999999999899997 8999877654
No 151
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=87.23 E-value=0.45 Score=36.46 Aligned_cols=30 Identities=17% Similarity=0.200 Sum_probs=24.3
Q ss_pred CCCCCc-hhHHHHHHHHHHCCCcEEEEcCCC
Q 030531 140 DRLQIM-PGTAQLCGFLDSKKIRSSSTVFKV 169 (175)
Q Consensus 140 ~~~~l~-PG~~e~L~~Lk~~gi~laIaTs~~ 169 (175)
+...++ |+|.+.|+.|++.||.+.|+||-.
T Consensus 25 ~D~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ~ 55 (159)
T PF08645_consen 25 DDWKFFPPGVPEALRELHKKGYKIVIVTNQS 55 (159)
T ss_dssp CGGEEC-TTHHHHHHHHHHTTEEEEEEEE-C
T ss_pred HHhhhcchhHHHHHHHHHhcCCeEEEEeCcc
Confidence 344555 589999999999999999999754
No 152
>PRK06769 hypothetical protein; Validated
Probab=87.02 E-value=0.38 Score=37.09 Aligned_cols=15 Identities=33% Similarity=0.674 Sum_probs=13.2
Q ss_pred CCcceEEEeccccCc
Q 030531 66 TRLRGVVFDMDGTLT 80 (175)
Q Consensus 66 ~~ikaVIFDmDGTLv 80 (175)
..||+++||.||||.
T Consensus 2 ~~~~~~~~d~d~~~~ 16 (173)
T PRK06769 2 TNIQAIFIDRDGTIG 16 (173)
T ss_pred CCCcEEEEeCCCccc
Confidence 459999999999994
No 153
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=86.78 E-value=0.31 Score=37.49 Aligned_cols=14 Identities=29% Similarity=0.736 Sum_probs=12.2
Q ss_pred ceEEEeccccCccC
Q 030531 69 RGVVFDMDGTLTVP 82 (175)
Q Consensus 69 kaVIFDmDGTLvDS 82 (175)
|+++||.||||+..
T Consensus 2 ~~~~~D~Dgtl~~~ 15 (176)
T TIGR00213 2 KAIFLDRDGTINID 15 (176)
T ss_pred CEEEEeCCCCEeCC
Confidence 68999999999953
No 154
>COG4996 Predicted phosphatase [General function prediction only]
Probab=86.67 E-value=0.33 Score=36.77 Aligned_cols=15 Identities=47% Similarity=0.519 Sum_probs=13.2
Q ss_pred ceEEEeccccCccCh
Q 030531 69 RGVVFDMDGTLTVPV 83 (175)
Q Consensus 69 kaVIFDmDGTLvDSe 83 (175)
++|+||.||||+|.-
T Consensus 1 ~~i~~d~d~t~wdhh 15 (164)
T COG4996 1 RAIVFDADKTLWDHH 15 (164)
T ss_pred CcEEEeCCCcccccc
Confidence 479999999999975
No 155
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=86.57 E-value=0.56 Score=35.49 Aligned_cols=22 Identities=5% Similarity=-0.235 Sum_probs=19.8
Q ss_pred HHHHHHHCCCcEEEEcCCCCCC
Q 030531 151 LCGFLDSKKIRSSSTVFKVSFF 172 (175)
Q Consensus 151 ~L~~Lk~~gi~laIaTs~~~~f 172 (175)
+|+.|+++|++++|+||++...
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~ 57 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKL 57 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHH
Confidence 8999999999999999998653
No 156
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=84.48 E-value=5.8 Score=32.55 Aligned_cols=27 Identities=15% Similarity=-0.044 Sum_probs=21.3
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEcCCC
Q 030531 141 RLQIMPGTAQLCGFLDSKKIRSSSTVFKV 169 (175)
Q Consensus 141 ~~~l~PG~~e~L~~Lk~~gi~laIaTs~~ 169 (175)
.+.+=|-.+++|-.|+.++ ..+.||..
T Consensus 98 ~LkPD~~LRnlLL~l~~r~--k~~FTNa~ 124 (244)
T KOG3109|consen 98 DLKPDPVLRNLLLSLKKRR--KWIFTNAY 124 (244)
T ss_pred hcCCCHHHHHHHHhCcccc--EEEecCCc
Confidence 4667788999999998865 77788764
No 157
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=84.03 E-value=1.2 Score=35.10 Aligned_cols=28 Identities=14% Similarity=0.115 Sum_probs=25.0
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEcCCC
Q 030531 142 LQIMPGTAQLCGFLDSKKIRSSSTVFKV 169 (175)
Q Consensus 142 ~~l~PG~~e~L~~Lk~~gi~laIaTs~~ 169 (175)
..+.||+.+.|..|++.|+++.|+||-.
T Consensus 30 ~~~~~g~i~al~~l~~~gy~lVvvTNQs 57 (181)
T COG0241 30 FQFIPGVIPALLKLQRAGYKLVVVTNQS 57 (181)
T ss_pred hccCccHHHHHHHHHhCCCeEEEEECCC
Confidence 4578999999999999999999999854
No 158
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=83.44 E-value=0.65 Score=36.36 Aligned_cols=19 Identities=32% Similarity=0.497 Sum_probs=15.9
Q ss_pred CCCcceEEEeccccCccCh
Q 030531 65 KTRLRGVVFDMDGTLTVPV 83 (175)
Q Consensus 65 ~~~ikaVIFDmDGTLvDSe 83 (175)
...+|+||+|+|.||+-=.
T Consensus 25 ~~Gikgvi~DlDNTLv~wd 43 (175)
T COG2179 25 AHGIKGVILDLDNTLVPWD 43 (175)
T ss_pred HcCCcEEEEeccCceeccc
Confidence 3569999999999998654
No 159
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=83.38 E-value=0.66 Score=35.60 Aligned_cols=15 Identities=33% Similarity=0.381 Sum_probs=13.1
Q ss_pred ceEEEeccccCccCh
Q 030531 69 RGVVFDMDGTLTVPV 83 (175)
Q Consensus 69 kaVIFDmDGTLvDSe 83 (175)
|+++||-||||+++.
T Consensus 2 ~~~~~d~dg~l~~~~ 16 (161)
T TIGR01261 2 KILFIDRDGTLIEEP 16 (161)
T ss_pred CEEEEeCCCCccccC
Confidence 689999999999953
No 160
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=82.96 E-value=0.64 Score=43.87 Aligned_cols=15 Identities=40% Similarity=0.534 Sum_probs=13.6
Q ss_pred CcceEEEeccccCcc
Q 030531 67 RLRGVVFDMDGTLTV 81 (175)
Q Consensus 67 ~ikaVIFDmDGTLvD 81 (175)
..++|+||+||||++
T Consensus 491 ~~rLi~~D~DGTL~~ 505 (726)
T PRK14501 491 SRRLLLLDYDGTLVP 505 (726)
T ss_pred cceEEEEecCccccC
Confidence 468999999999997
No 161
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=82.84 E-value=1.4 Score=37.48 Aligned_cols=29 Identities=14% Similarity=0.119 Sum_probs=26.2
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEcCCCCC
Q 030531 143 QIMPGTAQLCGFLDSKKIRSSSTVFKVSF 171 (175)
Q Consensus 143 ~l~PG~~e~L~~Lk~~gi~laIaTs~~~~ 171 (175)
.++||+.|.++.|++.|..+-++|||+.-
T Consensus 38 ~~ipGs~e~l~~L~~~gK~i~fvTNNStk 66 (306)
T KOG2882|consen 38 KPIPGSPEALNLLKSLGKQIIFVTNNSTK 66 (306)
T ss_pred CCCCChHHHHHHHHHcCCcEEEEeCCCcc
Confidence 46899999999999999999999999853
No 162
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=82.23 E-value=0.83 Score=34.22 Aligned_cols=15 Identities=33% Similarity=0.558 Sum_probs=13.5
Q ss_pred ceEEEeccccCccCh
Q 030531 69 RGVVFDMDGTLTVPV 83 (175)
Q Consensus 69 kaVIFDmDGTLvDSe 83 (175)
+.+|+|+||||+++.
T Consensus 3 ~~lvldld~tl~~~~ 17 (148)
T smart00577 3 KTLVLDLDETLVHST 17 (148)
T ss_pred cEEEEeCCCCeECCC
Confidence 578999999999985
No 163
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=81.84 E-value=5.1 Score=33.09 Aligned_cols=27 Identities=15% Similarity=0.105 Sum_probs=19.4
Q ss_pred CchhHHHHHHHHHHCCCcEEEEcCCCC
Q 030531 144 IMPGTAQLCGFLDSKKIRSSSTVFKVS 170 (175)
Q Consensus 144 l~PG~~e~L~~Lk~~gi~laIaTs~~~ 170 (175)
.=+.+.++++.|.++|+++-.+|....
T Consensus 82 ie~~~~~~i~~lq~~~~~v~alT~~~~ 108 (252)
T PF11019_consen 82 IESDVPNIINSLQNKGIPVIALTARGP 108 (252)
T ss_pred cchhHHHHHHHHHHCCCcEEEEcCCCh
Confidence 346777888888888888777776553
No 164
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=81.68 E-value=0.74 Score=37.29 Aligned_cols=12 Identities=42% Similarity=0.396 Sum_probs=10.5
Q ss_pred eEEEeccccCcc
Q 030531 70 GVVFDMDGTLTV 81 (175)
Q Consensus 70 aVIFDmDGTLvD 81 (175)
.|+-||||||+|
T Consensus 3 li~tDlDGTLl~ 14 (249)
T TIGR01485 3 LLVSDLDNTLVD 14 (249)
T ss_pred EEEEcCCCcCcC
Confidence 567799999997
No 165
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=81.54 E-value=1.1 Score=35.76 Aligned_cols=19 Identities=26% Similarity=0.198 Sum_probs=15.8
Q ss_pred CCCcceEEEeccccCccCh
Q 030531 65 KTRLRGVVFDMDGTLTVPV 83 (175)
Q Consensus 65 ~~~ikaVIFDmDGTLvDSe 83 (175)
....|.++.|+||||+|+.
T Consensus 18 ~~~kklLVLDLDeTLvh~~ 36 (195)
T TIGR02245 18 REGKKLLVLDIDYTLFDHR 36 (195)
T ss_pred CCCCcEEEEeCCCceEccc
Confidence 3456899999999999973
No 166
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=79.19 E-value=1.2 Score=34.17 Aligned_cols=19 Identities=47% Similarity=0.730 Sum_probs=16.1
Q ss_pred CCCcceEEEeccccCccCh
Q 030531 65 KTRLRGVVFDMDGTLTVPV 83 (175)
Q Consensus 65 ~~~ikaVIFDmDGTLvDSe 83 (175)
...+++|++|+||||.+..
T Consensus 22 ~~~v~~vv~D~Dgtl~~~~ 40 (170)
T TIGR01668 22 KVGIKGVVLDKDNTLVYPD 40 (170)
T ss_pred HCCCCEEEEecCCccccCC
Confidence 3568999999999999654
No 167
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=78.78 E-value=1.2 Score=37.23 Aligned_cols=19 Identities=47% Similarity=0.560 Sum_probs=16.2
Q ss_pred CCCcceEEEeccccCccCh
Q 030531 65 KTRLRGVVFDMDGTLTVPV 83 (175)
Q Consensus 65 ~~~ikaVIFDmDGTLvDSe 83 (175)
..+-++++||+||||.+-.
T Consensus 15 ~a~~~~~~lDyDGTl~~i~ 33 (266)
T COG1877 15 NARKRLLFLDYDGTLTEIV 33 (266)
T ss_pred cccceEEEEeccccccccc
Confidence 4457899999999999886
No 168
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=78.45 E-value=1.1 Score=34.55 Aligned_cols=13 Identities=54% Similarity=0.670 Sum_probs=12.2
Q ss_pred EEEeccccCccCh
Q 030531 71 VVFDMDGTLTVPV 83 (175)
Q Consensus 71 VIFDmDGTLvDSe 83 (175)
||+|.||||.-|.
T Consensus 2 VvsDIDGTiT~SD 14 (157)
T PF08235_consen 2 VVSDIDGTITKSD 14 (157)
T ss_pred EEEeccCCcCccc
Confidence 8999999999996
No 169
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=78.23 E-value=1.2 Score=34.12 Aligned_cols=16 Identities=31% Similarity=0.544 Sum_probs=13.9
Q ss_pred ceEEEeccccCccChh
Q 030531 69 RGVVFDMDGTLTVPVI 84 (175)
Q Consensus 69 kaVIFDmDGTLvDSe~ 84 (175)
+.+++|+|+||+.|..
T Consensus 2 ~~lvlDLDeTLi~~~~ 17 (162)
T TIGR02251 2 KTLVLDLDETLVHSTF 17 (162)
T ss_pred cEEEEcCCCCcCCCCC
Confidence 4789999999999973
No 170
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=78.18 E-value=1 Score=38.32 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=16.2
Q ss_pred CCCcceEEEeccccCccCh
Q 030531 65 KTRLRGVVFDMDGTLTVPV 83 (175)
Q Consensus 65 ~~~ikaVIFDmDGTLvDSe 83 (175)
...+..+|||+||+|+--+
T Consensus 19 l~~~DtfifDcDGVlW~g~ 37 (306)
T KOG2882|consen 19 LDSFDTFIFDCDGVLWLGE 37 (306)
T ss_pred HhhcCEEEEcCCcceeecC
Confidence 3458899999999999866
No 171
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=77.97 E-value=1.9 Score=37.99 Aligned_cols=21 Identities=29% Similarity=0.320 Sum_probs=17.3
Q ss_pred CCCCcceEEEeccccCccChh
Q 030531 64 PKTRLRGVVFDMDGTLTVPVI 84 (175)
Q Consensus 64 ~~~~ikaVIFDmDGTLvDSe~ 84 (175)
....-|-+.||+||||||+..
T Consensus 71 v~~~~K~i~FD~dgtlI~t~s 91 (422)
T KOG2134|consen 71 VNGGSKIIMFDYDGTLIDTKS 91 (422)
T ss_pred cCCCcceEEEecCCceeecCC
Confidence 345578899999999999973
No 172
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=77.51 E-value=1.3 Score=42.90 Aligned_cols=17 Identities=35% Similarity=0.597 Sum_probs=14.6
Q ss_pred CcceEEEeccccCccCh
Q 030531 67 RLRGVVFDMDGTLTVPV 83 (175)
Q Consensus 67 ~ikaVIFDmDGTLvDSe 83 (175)
+.++|++|+||||++..
T Consensus 595 ~~rlI~LDyDGTLlp~~ 611 (854)
T PLN02205 595 TTRAILLDYDGTLMPQA 611 (854)
T ss_pred cCeEEEEecCCcccCCc
Confidence 57899999999999554
No 173
>PLN03017 trehalose-phosphatase
Probab=77.00 E-value=1.3 Score=38.78 Aligned_cols=13 Identities=38% Similarity=0.519 Sum_probs=11.0
Q ss_pred cceEEEeccccCc
Q 030531 68 LRGVVFDMDGTLT 80 (175)
Q Consensus 68 ikaVIFDmDGTLv 80 (175)
-.+|++|+||||+
T Consensus 111 ~~llflD~DGTL~ 123 (366)
T PLN03017 111 QIVMFLDYDGTLS 123 (366)
T ss_pred CeEEEEecCCcCc
Confidence 3577889999999
No 174
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=76.84 E-value=3.7 Score=32.23 Aligned_cols=31 Identities=13% Similarity=0.039 Sum_probs=27.2
Q ss_pred CCCCCchhHHHHHHHHHHCCCcEEEEcCCCC
Q 030531 140 DRLQIMPGTAQLCGFLDSKKIRSSSTVFKVS 170 (175)
Q Consensus 140 ~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~ 170 (175)
+.-..-|.+++.+..++++|+++.|+|||.+
T Consensus 43 d~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e 73 (175)
T COG2179 43 DNPDATPELRAWLAELKEAGIKVVVVSNNKE 73 (175)
T ss_pred cCCCCCHHHHHHHHHHHhcCCEEEEEeCCCH
Confidence 4556789999999999999999999999865
No 175
>PTZ00445 p36-lilke protein; Provisional
Probab=74.92 E-value=1.3 Score=36.09 Aligned_cols=29 Identities=7% Similarity=0.000 Sum_probs=21.0
Q ss_pred CCCCCchhHHHHHHHHHHCCCcEEEEcCC
Q 030531 140 DRLQIMPGTAQLCGFLDSKKIRSSSTVFK 168 (175)
Q Consensus 140 ~~~~l~PG~~e~L~~Lk~~gi~laIaTs~ 168 (175)
+++-.+++-.+=++..++.|+....+++.
T Consensus 179 eE~LFIDD~~~NVeaA~~lGi~ai~f~~~ 207 (219)
T PTZ00445 179 DEILFIDDDMNNCKNALKEGYIALHVTGN 207 (219)
T ss_pred HHeEeecCCHHHHHHHHHCCCEEEEcCCh
Confidence 34556777777778888888887777754
No 176
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=74.86 E-value=2 Score=29.03 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=17.6
Q ss_pred cceEEEeccccCccChhhHHHH
Q 030531 68 LRGVVFDMDGTLTVPVIDFPAM 89 (175)
Q Consensus 68 ikaVIFDmDGTLvDSe~~~~a~ 89 (175)
.-.|..+-|||.+|++.+|...
T Consensus 38 ~~~l~L~eDGT~VddEeyF~tL 59 (74)
T smart00266 38 PVTLVLEEDGTIVDDEEYFQTL 59 (74)
T ss_pred CcEEEEecCCcEEccHHHHhcC
Confidence 3467899999999999777643
No 177
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=74.84 E-value=4.5 Score=29.98 Aligned_cols=30 Identities=0% Similarity=-0.167 Sum_probs=26.0
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEcCCCCC
Q 030531 142 LQIMPGTAQLCGFLDSKKIRSSSTVFKVSF 171 (175)
Q Consensus 142 ~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~ 171 (175)
..+.+++.+.|+.|+++|+.+.++|+....
T Consensus 23 ~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~ 52 (126)
T TIGR01689 23 VAPILAVIEKLRHYKALGFEIVISSSRNMR 52 (126)
T ss_pred cccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 457889999999999999999999987654
No 178
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=74.08 E-value=1.9 Score=33.49 Aligned_cols=23 Identities=17% Similarity=-0.244 Sum_probs=18.8
Q ss_pred HHHHHHHCCCcEEEEcCCCCCCc
Q 030531 151 LCGFLDSKKIRSSSTVFKVSFFR 173 (175)
Q Consensus 151 ~L~~Lk~~gi~laIaTs~~~~f~ 173 (175)
-+..|+++|++++|+||+.+..+
T Consensus 42 ~~~~L~~~Gi~laIiT~k~~~~~ 64 (169)
T TIGR02726 42 GVIVLQLCGIDVAIITSKKSGAV 64 (169)
T ss_pred HHHHHHHCCCEEEEEECCCcHHH
Confidence 46677889999999999987643
No 179
>PLN02151 trehalose-phosphatase
Probab=73.62 E-value=1.8 Score=37.69 Aligned_cols=13 Identities=38% Similarity=0.519 Sum_probs=11.3
Q ss_pred cceEEEeccccCc
Q 030531 68 LRGVVFDMDGTLT 80 (175)
Q Consensus 68 ikaVIFDmDGTLv 80 (175)
-.++++|+||||+
T Consensus 98 ~~ll~lDyDGTL~ 110 (354)
T PLN02151 98 QIVMFLDYDGTLS 110 (354)
T ss_pred ceEEEEecCccCC
Confidence 3578899999999
No 180
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=73.22 E-value=3.5 Score=30.97 Aligned_cols=31 Identities=3% Similarity=-0.025 Sum_probs=25.0
Q ss_pred CCCCCchhHHHHHHHHHHCCCcEEEEcCCCC
Q 030531 140 DRLQIMPGTAQLCGFLDSKKIRSSSTVFKVS 170 (175)
Q Consensus 140 ~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~ 170 (175)
+....++++...|..|+++|+.++++|+.+.
T Consensus 41 ~e~~fY~Di~rIL~dLk~~GVtl~~ASRt~a 71 (144)
T KOG4549|consen 41 EEMIFYDDIRRILVDLKKLGVTLIHASRTMA 71 (144)
T ss_pred ceeeeccchhHHHHHHHhcCcEEEEecCCCC
Confidence 3456788888899999999999999987653
No 181
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=73.21 E-value=3.7 Score=39.81 Aligned_cols=28 Identities=14% Similarity=0.035 Sum_probs=26.1
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEcCCCC
Q 030531 143 QIMPGTAQLCGFLDSKKIRSSSTVFKVS 170 (175)
Q Consensus 143 ~l~PG~~e~L~~Lk~~gi~laIaTs~~~ 170 (175)
++.||+.|.++.|++.|+++.++|+...
T Consensus 528 p~r~~~~~~i~~l~~~Gi~v~miTGD~~ 555 (884)
T TIGR01522 528 PPRPGVKEAVTTLITGGVRIIMITGDSQ 555 (884)
T ss_pred cchhHHHHHHHHHHHCCCeEEEECCCCH
Confidence 7899999999999999999999998764
No 182
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=73.04 E-value=2.3 Score=32.49 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=15.1
Q ss_pred CcceEEEeccccCccChh
Q 030531 67 RLRGVVFDMDGTLTVPVI 84 (175)
Q Consensus 67 ~ikaVIFDmDGTLvDSe~ 84 (175)
+...+++|+|.||+.|..
T Consensus 5 ~kl~LVLDLDeTLihs~~ 22 (156)
T TIGR02250 5 KKLHLVLDLDQTLIHTTK 22 (156)
T ss_pred CceEEEEeCCCCcccccc
Confidence 345789999999999973
No 183
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=73.00 E-value=2.4 Score=28.94 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=17.8
Q ss_pred cceEEEeccccCccChhhHHHH
Q 030531 68 LRGVVFDMDGTLTVPVIDFPAM 89 (175)
Q Consensus 68 ikaVIFDmDGTLvDSe~~~~a~ 89 (175)
.-.++.+-|||.+|++.+|...
T Consensus 40 ~~~lvL~eDGT~Vd~EeyF~~L 61 (78)
T cd06539 40 LVTLVLEEDGTVVDTEEFFQTL 61 (78)
T ss_pred CcEEEEeCCCCEEccHHHHhhC
Confidence 3467899999999999877644
No 184
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=72.78 E-value=2.5 Score=29.11 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=18.1
Q ss_pred cceEEEeccccCccChhhHHHH
Q 030531 68 LRGVVFDMDGTLTVPVIDFPAM 89 (175)
Q Consensus 68 ikaVIFDmDGTLvDSe~~~~a~ 89 (175)
.-.++.+-|||.+|++.+|...
T Consensus 39 ~~~lvLeeDGT~Vd~EeyF~tL 60 (81)
T cd06537 39 VLTLVLEEDGTAVDSEDFFELL 60 (81)
T ss_pred ceEEEEecCCCEEccHHHHhhC
Confidence 3578899999999999877654
No 185
>PLN02580 trehalose-phosphatase
Probab=72.05 E-value=2.1 Score=37.76 Aligned_cols=16 Identities=38% Similarity=0.474 Sum_probs=12.3
Q ss_pred cceEEEeccccCccCh
Q 030531 68 LRGVVFDMDGTLTVPV 83 (175)
Q Consensus 68 ikaVIFDmDGTLvDSe 83 (175)
-.++++|+||||+.-.
T Consensus 119 ~~~LfLDyDGTLaPIv 134 (384)
T PLN02580 119 KIALFLDYDGTLSPIV 134 (384)
T ss_pred CeEEEEecCCccCCCC
Confidence 3477889999997543
No 186
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=71.99 E-value=4 Score=32.90 Aligned_cols=18 Identities=11% Similarity=0.093 Sum_probs=16.1
Q ss_pred CCcceEEEeccccCccCh
Q 030531 66 TRLRGVVFDMDGTLTVPV 83 (175)
Q Consensus 66 ~~ikaVIFDmDGTLvDSe 83 (175)
..+++++||+||||++..
T Consensus 6 ~~~~~~~~D~dG~l~~~~ 23 (242)
T TIGR01459 6 NDYDVFLLDLWGVIIDGN 23 (242)
T ss_pred hcCCEEEEecccccccCC
Confidence 458999999999999886
No 187
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=71.54 E-value=4.1 Score=38.77 Aligned_cols=30 Identities=10% Similarity=-0.103 Sum_probs=27.1
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEcCCCCC
Q 030531 142 LQIMPGTAQLCGFLDSKKIRSSSTVFKVSF 171 (175)
Q Consensus 142 ~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~ 171 (175)
-+++||+.+.|+.|+++|++++++|+....
T Consensus 567 d~~r~~a~~~i~~L~~~gi~~~llTGd~~~ 596 (741)
T PRK11033 567 DTLRADARQAISELKALGIKGVMLTGDNPR 596 (741)
T ss_pred cCCchhHHHHHHHHHHCCCEEEEEcCCCHH
Confidence 378999999999999999999999987654
No 188
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=71.10 E-value=2.8 Score=28.64 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=17.8
Q ss_pred cceEEEeccccCccChhhHHHH
Q 030531 68 LRGVVFDMDGTLTVPVIDFPAM 89 (175)
Q Consensus 68 ikaVIFDmDGTLvDSe~~~~a~ 89 (175)
.-.|+.+-|||.||++.+|...
T Consensus 40 ~~~lvL~eDGTeVddEeYF~tL 61 (78)
T cd01615 40 PVTLVLEEDGTEVDDEEYFQTL 61 (78)
T ss_pred CeEEEEeCCCcEEccHHHHhcC
Confidence 3468899999999999877644
No 189
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=70.68 E-value=2.9 Score=35.40 Aligned_cols=19 Identities=32% Similarity=0.351 Sum_probs=15.5
Q ss_pred CCCcceEEEeccccCccCh
Q 030531 65 KTRLRGVVFDMDGTLTVPV 83 (175)
Q Consensus 65 ~~~ikaVIFDmDGTLvDSe 83 (175)
......|+||||.||+.++
T Consensus 119 ~~~phVIVfDlD~TLItd~ 137 (297)
T PF05152_consen 119 WEPPHVIVFDLDSTLITDE 137 (297)
T ss_pred CCCCcEEEEECCCcccccC
Confidence 3456789999999999776
No 190
>PRK10671 copA copper exporting ATPase; Provisional
Probab=70.38 E-value=4.4 Score=38.96 Aligned_cols=31 Identities=10% Similarity=-0.114 Sum_probs=27.5
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEcCCCCC
Q 030531 141 RLQIMPGTAQLCGFLDSKKIRSSSTVFKVSF 171 (175)
Q Consensus 141 ~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~ 171 (175)
.-+++||+.+.|+.|++.|++++++|+..+.
T Consensus 648 ~d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~ 678 (834)
T PRK10671 648 RDPLRSDSVAALQRLHKAGYRLVMLTGDNPT 678 (834)
T ss_pred cCcchhhHHHHHHHHHHCCCeEEEEcCCCHH
Confidence 3468999999999999999999999998764
No 191
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=70.25 E-value=2.4 Score=38.16 Aligned_cols=18 Identities=39% Similarity=0.403 Sum_probs=15.5
Q ss_pred CcceEEEeccccCccChh
Q 030531 67 RLRGVVFDMDGTLTVPVI 84 (175)
Q Consensus 67 ~ikaVIFDmDGTLvDSe~ 84 (175)
..+.||+|+||||.-|..
T Consensus 374 n~kiVVsDiDGTITkSD~ 391 (580)
T COG5083 374 NKKIVVSDIDGTITKSDA 391 (580)
T ss_pred CCcEEEEecCCcEEehhh
Confidence 367899999999999983
No 192
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=69.66 E-value=3.2 Score=28.53 Aligned_cols=21 Identities=24% Similarity=0.238 Sum_probs=17.3
Q ss_pred ceEEEeccccCccChhhHHHH
Q 030531 69 RGVVFDMDGTLTVPVIDFPAM 89 (175)
Q Consensus 69 kaVIFDmDGTLvDSe~~~~a~ 89 (175)
-.|+.+-|||.+|++.+|...
T Consensus 43 ~~lvL~eDGT~VddEeyF~tL 63 (80)
T cd06536 43 ITLVLAEDGTIVEDEDYFLCL 63 (80)
T ss_pred eEEEEecCCcEEccHHHHhhC
Confidence 467899999999999877644
No 193
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=68.95 E-value=5.8 Score=33.92 Aligned_cols=29 Identities=7% Similarity=0.008 Sum_probs=25.4
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEcCCC
Q 030531 141 RLQIMPGTAQLCGFLDSKKIRSSSTVFKV 169 (175)
Q Consensus 141 ~~~l~PG~~e~L~~Lk~~gi~laIaTs~~ 169 (175)
+.-+.|.+.|+++.++++|+.++|.||+.
T Consensus 140 EPlL~p~l~eli~~~k~~Gi~~~L~TNG~ 168 (322)
T PRK13762 140 EPTLYPYLPELIEEFHKRGFTTFLVTNGT 168 (322)
T ss_pred cccchhhHHHHHHHHHHcCCCEEEECCCC
Confidence 33467899999999999999999999985
No 194
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=68.83 E-value=5.2 Score=33.02 Aligned_cols=17 Identities=41% Similarity=0.700 Sum_probs=15.4
Q ss_pred CcceEEEeccccCccCh
Q 030531 67 RLRGVVFDMDGTLTVPV 83 (175)
Q Consensus 67 ~ikaVIFDmDGTLvDSe 83 (175)
++++|+||+||||++..
T Consensus 1 ~~~~~~~D~DGtl~~~~ 17 (279)
T TIGR01452 1 RAQGFIFDCDGVLWLGE 17 (279)
T ss_pred CccEEEEeCCCceEcCC
Confidence 47899999999999987
No 195
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=68.64 E-value=6 Score=32.41 Aligned_cols=16 Identities=31% Similarity=0.735 Sum_probs=14.1
Q ss_pred cceEEEeccccCccCh
Q 030531 68 LRGVVFDMDGTLTVPV 83 (175)
Q Consensus 68 ikaVIFDmDGTLvDSe 83 (175)
+|+|+||+||||++..
T Consensus 1 ~k~i~~D~DGtl~~~~ 16 (257)
T TIGR01458 1 VKGVLLDISGVLYISD 16 (257)
T ss_pred CCEEEEeCCCeEEeCC
Confidence 5789999999999864
No 196
>PLN02382 probable sucrose-phosphatase
Probab=68.47 E-value=2.7 Score=37.19 Aligned_cols=13 Identities=31% Similarity=0.317 Sum_probs=10.9
Q ss_pred eEEEeccccCccC
Q 030531 70 GVVFDMDGTLTVP 82 (175)
Q Consensus 70 aVIFDmDGTLvDS 82 (175)
.|+-||||||+|+
T Consensus 11 lI~sDLDGTLL~~ 23 (413)
T PLN02382 11 MIVSDLDHTMVDH 23 (413)
T ss_pred EEEEcCCCcCcCC
Confidence 5566999999987
No 197
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=68.12 E-value=6.9 Score=33.31 Aligned_cols=32 Identities=6% Similarity=-0.020 Sum_probs=28.1
Q ss_pred CCCCCCchhHHHHHHHHHHCC-CcEEEEcCCCC
Q 030531 139 LDRLQIMPGTAQLCGFLDSKK-IRSSSTVFKVS 170 (175)
Q Consensus 139 ~~~~~l~PG~~e~L~~Lk~~g-i~laIaTs~~~ 170 (175)
...-.++|...|+++.+|+.| ++++|+||++.
T Consensus 88 ~GEPTLy~~L~elI~~~k~~g~~~tflvTNgsl 120 (296)
T COG0731 88 SGEPTLYPNLGELIEEIKKRGKKTTFLVTNGSL 120 (296)
T ss_pred CCCcccccCHHHHHHHHHhcCCceEEEEeCCCh
Confidence 345678999999999999999 79999999874
No 198
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=67.03 E-value=3 Score=36.20 Aligned_cols=19 Identities=32% Similarity=0.279 Sum_probs=16.6
Q ss_pred CCCcceEEEeccccCccCh
Q 030531 65 KTRLRGVVFDMDGTLTVPV 83 (175)
Q Consensus 65 ~~~ikaVIFDmDGTLvDSe 83 (175)
...+++|-||||.||+.-.
T Consensus 9 l~~i~~~GFDmDyTLa~Y~ 27 (343)
T TIGR02244 9 LEKIQVFGFDMDYTLAQYK 27 (343)
T ss_pred cccCCEEEECccccccccC
Confidence 4569999999999999875
No 199
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=66.16 E-value=2.9 Score=33.54 Aligned_cols=12 Identities=50% Similarity=0.667 Sum_probs=7.4
Q ss_pred EEeccccCccCh
Q 030531 72 VFDMDGTLTVPV 83 (175)
Q Consensus 72 IFDmDGTLvDSe 83 (175)
++|+||||++-.
T Consensus 1 ~lDyDGTL~p~~ 12 (235)
T PF02358_consen 1 FLDYDGTLAPIV 12 (235)
T ss_dssp EEE-TTTSS---
T ss_pred CcccCCccCCCC
Confidence 589999999886
No 200
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=65.91 E-value=1.5 Score=32.83 Aligned_cols=32 Identities=9% Similarity=0.074 Sum_probs=23.6
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEcCCCCCCc
Q 030531 141 RLQIMPGTAQLCGFLDSKKIRSSSTVFKVSFFR 173 (175)
Q Consensus 141 ~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f~ 173 (175)
.+.+.||+.++|+.|.+ .+.++|.|++.+.++
T Consensus 34 ~v~~RP~l~~FL~~l~~-~~ev~i~T~~~~~ya 65 (159)
T PF03031_consen 34 YVKLRPGLDEFLEELSK-HYEVVIWTSASEEYA 65 (159)
T ss_dssp EEEE-TTHHHHHHHHHH-HCEEEEE-SS-HHHH
T ss_pred eEeeCchHHHHHHHHHH-hceEEEEEeehhhhh
Confidence 35578999999999965 599999999876553
No 201
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=63.63 E-value=4.9 Score=27.54 Aligned_cols=21 Identities=33% Similarity=0.313 Sum_probs=17.5
Q ss_pred ceEEEeccccCccChhhHHHH
Q 030531 69 RGVVFDMDGTLTVPVIDFPAM 89 (175)
Q Consensus 69 kaVIFDmDGTLvDSe~~~~a~ 89 (175)
-.|+.+-|||.||++.+|...
T Consensus 40 ~~lvL~eDGT~Vd~EeyF~tL 60 (79)
T cd06538 40 SSLVLDEDGTGVDTEEFFQAL 60 (79)
T ss_pred cEEEEecCCcEEccHHHHhhC
Confidence 468899999999999877654
No 202
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=63.02 E-value=8.7 Score=31.24 Aligned_cols=27 Identities=11% Similarity=-0.007 Sum_probs=24.2
Q ss_pred CchhHHHHHHHHHHCCCcEEEEcCCCC
Q 030531 144 IMPGTAQLCGFLDSKKIRSSSTVFKVS 170 (175)
Q Consensus 144 l~PG~~e~L~~Lk~~gi~laIaTs~~~ 170 (175)
+.+++.++++.+++.|+++.|-||++-
T Consensus 85 l~~~l~~li~~l~~~g~~v~leTNGtl 111 (238)
T TIGR03365 85 LQKPLGELIDLGKAKGYRFALETQGSV 111 (238)
T ss_pred hhHhHHHHHHHHHHCCCCEEEECCCCC
Confidence 348899999999999999999999874
No 203
>PRK14129 heat shock protein HspQ; Provisional
Probab=61.61 E-value=7.4 Score=28.02 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=19.5
Q ss_pred CCcceEEEeccccCccChhhHHHH
Q 030531 66 TRLRGVVFDMDGTLTVPVIDFPAM 89 (175)
Q Consensus 66 ~~ikaVIFDmDGTLvDSe~~~~a~ 89 (175)
-.+++||||+|-.--.++.++.++
T Consensus 17 ~~yrGVV~DVDP~fs~~e~w~~~i 40 (105)
T PRK14129 17 LGYLGVVVDIDPEYSLEEPSPDEL 40 (105)
T ss_pred cCCCeEEEeeCCCcCCCchhHHhh
Confidence 358999999999998888666555
No 204
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=59.25 E-value=9.3 Score=36.14 Aligned_cols=28 Identities=11% Similarity=-0.009 Sum_probs=25.8
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEcCCCC
Q 030531 143 QIMPGTAQLCGFLDSKKIRSSSTVFKVS 170 (175)
Q Consensus 143 ~l~PG~~e~L~~Lk~~gi~laIaTs~~~ 170 (175)
++.||+.|.++.|++.|+++.++|+...
T Consensus 446 ~~Rp~a~eaI~~l~~~Gi~v~miTGD~~ 473 (675)
T TIGR01497 446 IVKGGIKERFAQLRKMGIKTIMITGDNR 473 (675)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEcCCCH
Confidence 6889999999999999999999998654
No 205
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=59.13 E-value=11 Score=36.82 Aligned_cols=27 Identities=15% Similarity=-0.066 Sum_probs=25.2
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEcCCC
Q 030531 143 QIMPGTAQLCGFLDSKKIRSSSTVFKV 169 (175)
Q Consensus 143 ~l~PG~~e~L~~Lk~~gi~laIaTs~~ 169 (175)
++.||+.|.++.|++.|+++.++|+..
T Consensus 537 plr~~v~e~I~~l~~aGI~v~miTGD~ 563 (917)
T TIGR01116 537 PPRPEVADAIEKCRTAGIRVIMITGDN 563 (917)
T ss_pred CCchhHHHHHHHHHHCCCEEEEecCCC
Confidence 689999999999999999999999865
No 206
>COG4996 Predicted phosphatase [General function prediction only]
Probab=58.91 E-value=7 Score=29.71 Aligned_cols=31 Identities=3% Similarity=0.131 Sum_probs=27.0
Q ss_pred CCCCCchhHHHHHHHHHHCCCcEEEEcCCCC
Q 030531 140 DRLQIMPGTAQLCGFLDSKKIRSSSTVFKVS 170 (175)
Q Consensus 140 ~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~ 170 (175)
..+.++|.++|+++.++..|+-++.+|=|..
T Consensus 38 ~ev~L~~~v~~~l~warnsG~i~~~~sWN~~ 68 (164)
T COG4996 38 REVHLFPDVKETLKWARNSGYILGLASWNFE 68 (164)
T ss_pred eEEEEcHHHHHHHHHHHhCCcEEEEeecCch
Confidence 4577999999999999999999999986654
No 207
>PTZ00445 p36-lilke protein; Provisional
Probab=58.66 E-value=12 Score=30.47 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=22.0
Q ss_pred CchhHHHHHHHHHHCCCcEEEEcCC
Q 030531 144 IMPGTAQLCGFLDSKKIRSSSTVFK 168 (175)
Q Consensus 144 l~PG~~e~L~~Lk~~gi~laIaTs~ 168 (175)
+.|...+++..|++.|++++|||=+
T Consensus 76 ~tpefk~~~~~l~~~~I~v~VVTfS 100 (219)
T PTZ00445 76 VTPDFKILGKRLKNSNIKISVVTFS 100 (219)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEEcc
Confidence 5678889999999999999999944
No 208
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=56.91 E-value=5.7 Score=38.18 Aligned_cols=15 Identities=40% Similarity=0.543 Sum_probs=12.9
Q ss_pred cceEEEeccccCccC
Q 030531 68 LRGVVFDMDGTLTVP 82 (175)
Q Consensus 68 ikaVIFDmDGTLvDS 82 (175)
-++++||+||||+..
T Consensus 507 ~rll~LDyDGTL~~~ 521 (797)
T PLN03063 507 NRLLILGFYGTLTEP 521 (797)
T ss_pred CeEEEEecCccccCC
Confidence 478999999999964
No 209
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=55.71 E-value=7 Score=31.89 Aligned_cols=23 Identities=9% Similarity=0.046 Sum_probs=15.3
Q ss_pred HHHHHHHHHHCCCcEEEEcCCCC
Q 030531 148 TAQLCGFLDSKKIRSSSTVFKVS 170 (175)
Q Consensus 148 ~~e~L~~Lk~~gi~laIaTs~~~ 170 (175)
+.++-+.|+++|+.+-++-++.+
T Consensus 133 ~~~i~~~l~~~~l~~~~i~s~~~ 155 (247)
T PF05116_consen 133 LEEIRARLRQRGLRVNVIYSNGR 155 (247)
T ss_dssp HHHHHHHHHCCTCEEEEEECTCC
T ss_pred HHHHHHHHHHcCCCeeEEEccce
Confidence 55566667788998877754443
No 210
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=55.64 E-value=6 Score=38.76 Aligned_cols=15 Identities=33% Similarity=0.519 Sum_probs=12.9
Q ss_pred cceEEEeccccCccC
Q 030531 68 LRGVVFDMDGTLTVP 82 (175)
Q Consensus 68 ikaVIFDmDGTLvDS 82 (175)
-++++||+||||+.-
T Consensus 591 ~RLlfLDyDGTLap~ 605 (934)
T PLN03064 591 NRLLILGFNATLTEP 605 (934)
T ss_pred ceEEEEecCceeccC
Confidence 478999999999864
No 211
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=55.35 E-value=7.6 Score=33.81 Aligned_cols=17 Identities=29% Similarity=0.272 Sum_probs=14.6
Q ss_pred CcceEEEeccccCccCh
Q 030531 67 RLRGVVFDMDGTLTVPV 83 (175)
Q Consensus 67 ~ikaVIFDmDGTLvDSe 83 (175)
+.|.++||-||||+...
T Consensus 1 ~~k~l~lDrDgtl~~~~ 17 (354)
T PRK05446 1 MQKILFIDRDGTLIEEP 17 (354)
T ss_pred CCcEEEEeCCCCccCCC
Confidence 35789999999999974
No 212
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=55.09 E-value=6.9 Score=26.71 Aligned_cols=18 Identities=28% Similarity=0.255 Sum_probs=14.5
Q ss_pred eEEEeccccCccChhhHH
Q 030531 70 GVVFDMDGTLTVPVIDFP 87 (175)
Q Consensus 70 aVIFDmDGTLvDSe~~~~ 87 (175)
.++.+-|||.||++.+|.
T Consensus 42 ~lvL~eDGT~VddEeyF~ 59 (78)
T PF02017_consen 42 RLVLEEDGTEVDDEEYFQ 59 (78)
T ss_dssp EEEETTTTCBESSCHHHC
T ss_pred EEEEeCCCcEEccHHHHh
Confidence 457789999999996654
No 213
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=54.90 E-value=8.1 Score=31.89 Aligned_cols=27 Identities=11% Similarity=0.087 Sum_probs=19.5
Q ss_pred CCCCCchhHHHHHHHHHHCCCcEEEEc
Q 030531 140 DRLQIMPGTAQLCGFLDSKKIRSSSTV 166 (175)
Q Consensus 140 ~~~~l~PG~~e~L~~Lk~~gi~laIaT 166 (175)
+.+..+.+-..-++..++.|++..-|+
T Consensus 270 ~~~~~vgD~~~d~~~a~~~Gi~~i~v~ 296 (300)
T PHA02530 270 DVLLAVDDRDQVVDMWRRIGLECWQVA 296 (300)
T ss_pred eEEEEEcCcHHHHHHHHHhCCeEEEec
Confidence 345567777778888888888876664
No 214
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=54.88 E-value=14 Score=35.06 Aligned_cols=28 Identities=14% Similarity=0.101 Sum_probs=25.3
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEcCCCC
Q 030531 143 QIMPGTAQLCGFLDSKKIRSSSTVFKVS 170 (175)
Q Consensus 143 ~l~PG~~e~L~~Lk~~gi~laIaTs~~~ 170 (175)
++.||++|.++.|++.|+++.++|+-..
T Consensus 445 ~~R~~~~eai~~Lr~~GI~vvMiTGDn~ 472 (679)
T PRK01122 445 IVKPGIKERFAELRKMGIKTVMITGDNP 472 (679)
T ss_pred cCchhHHHHHHHHHHCCCeEEEECCCCH
Confidence 5789999999999999999999997653
No 215
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=54.69 E-value=6.8 Score=33.97 Aligned_cols=45 Identities=22% Similarity=0.124 Sum_probs=0.0
Q ss_pred hhhhhhhcccCccchhhhhhcccccCCCccccccccccccccCCCCCCCCCcceEEEeccccCc
Q 030531 17 HFLSKYQNHHKFMPLFLSKSFLFLPTRPFSSISNFTSYMMSSFSPPKPKTRLRGVVFDMDGTLT 80 (175)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ikaVIFDmDGTLv 80 (175)
|++....+|----..-.+++|+...+..+.+.+.. +.||.||+|+
T Consensus 3 h~l~~ar~~l~rr~r~~~~kf~~~~s~~ss~~~fg-------------------fafDIDGVL~ 47 (389)
T KOG1618|consen 3 HLLILARNSLRRRNRPPMRKFISEISFESSPPTFG-------------------FAFDIDGVLF 47 (389)
T ss_pred hhHHHhhHHHHHhcCCchhhhhcccCCCCCCCcee-------------------EEEecccEEE
No 216
>PF06117 DUF957: Enterobacterial protein of unknown function (DUF957); InterPro: IPR009301 This family consists of several hypothetical proteins from Escherichia coli, Salmonella typhi, Shigella flexneri and Proteus vulgaris. The function of this family is unknown.
Probab=54.28 E-value=12 Score=24.51 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=17.4
Q ss_pred cceEEEeccccCccChhhHHHH
Q 030531 68 LRGVVFDMDGTLTVPVIDFPAM 89 (175)
Q Consensus 68 ikaVIFDmDGTLvDSe~~~~a~ 89 (175)
=..||||-|+.-+||...+.++
T Consensus 24 es~iiFDNded~tdSa~llp~i 45 (65)
T PF06117_consen 24 ESDIIFDNDEDKTDSAALLPAI 45 (65)
T ss_pred CCCeeecCCCcccchHHHHHHH
Confidence 3478999999999999655444
No 217
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=53.94 E-value=14 Score=34.89 Aligned_cols=28 Identities=14% Similarity=-0.029 Sum_probs=25.5
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEcCCCC
Q 030531 143 QIMPGTAQLCGFLDSKKIRSSSTVFKVS 170 (175)
Q Consensus 143 ~l~PG~~e~L~~Lk~~gi~laIaTs~~~ 170 (175)
++.||++|.++.|++.|+++.++|+...
T Consensus 441 p~R~~a~e~I~~Lr~~GI~vvMiTGDn~ 468 (673)
T PRK14010 441 VIKDGLVERFRELREMGIETVMCTGDNE 468 (673)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEECCCCH
Confidence 6889999999999999999999997653
No 218
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=53.81 E-value=9.7 Score=29.47 Aligned_cols=23 Identities=13% Similarity=-0.138 Sum_probs=19.0
Q ss_pred HHHHHHHHCCCcEEEEcCCCCCC
Q 030531 150 QLCGFLDSKKIRSSSTVFKVSFF 172 (175)
Q Consensus 150 e~L~~Lk~~gi~laIaTs~~~~f 172 (175)
..++.|+++|++++|+||+....
T Consensus 55 ~~i~~L~~~Gi~v~I~T~~~~~~ 77 (183)
T PRK09484 55 YGIRCLLTSGIEVAIITGRKSKL 77 (183)
T ss_pred HHHHHHHHCCCEEEEEeCCCcHH
Confidence 46778888999999999987643
No 219
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=52.51 E-value=15 Score=35.03 Aligned_cols=28 Identities=4% Similarity=-0.242 Sum_probs=25.6
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEcCCCC
Q 030531 143 QIMPGTAQLCGFLDSKKIRSSSTVFKVS 170 (175)
Q Consensus 143 ~l~PG~~e~L~~Lk~~gi~laIaTs~~~ 170 (175)
++.|++.+.++.|++.|+++.++|+...
T Consensus 442 p~R~~a~~aI~~l~~aGI~v~miTGD~~ 469 (755)
T TIGR01647 442 PPRHDTKETIERARHLGVEVKMVTGDHL 469 (755)
T ss_pred CChhhHHHHHHHHHHCCCeEEEECCCCH
Confidence 6889999999999999999999997654
No 220
>COG3785 Uncharacterized conserved protein [Function unknown]
Probab=51.76 E-value=9.4 Score=27.59 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=20.4
Q ss_pred CCcceEEEeccccCccChhhHHHH
Q 030531 66 TRLRGVVFDMDGTLTVPVIDFPAM 89 (175)
Q Consensus 66 ~~ikaVIFDmDGTLvDSe~~~~a~ 89 (175)
-.+++|+||.|-.-.+|+.++.++
T Consensus 26 fpfrGVV~DvDPeyanteew~~~i 49 (116)
T COG3785 26 FPFRGVVFDVDPEYANTEEWPDEI 49 (116)
T ss_pred cccceEEEecCcccccCccChhhc
Confidence 358999999999999999766665
No 221
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=51.12 E-value=16 Score=32.18 Aligned_cols=31 Identities=10% Similarity=-0.116 Sum_probs=27.4
Q ss_pred CchhHHHHHHHHHHCCCcEEEEcCCCCCCcc
Q 030531 144 IMPGTAQLCGFLDSKKIRSSSTVFKVSFFRH 174 (175)
Q Consensus 144 l~PG~~e~L~~Lk~~gi~laIaTs~~~~f~~ 174 (175)
--|....+|+.|+++|.++-++||++--|++
T Consensus 241 r~~ql~~fl~kL~~~GKklFLiTNSPysFVd 271 (510)
T KOG2470|consen 241 RNPQLLAFLRKLKDHGKKLFLITNSPYSFVD 271 (510)
T ss_pred ccHHHHHHHHHHHHhcCcEEEEeCCchhhhh
Confidence 4467889999999999999999999988875
No 222
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=51.07 E-value=9.1 Score=31.63 Aligned_cols=16 Identities=31% Similarity=0.264 Sum_probs=13.7
Q ss_pred CCcceEEEeccccCcc
Q 030531 66 TRLRGVVFDMDGTLTV 81 (175)
Q Consensus 66 ~~ikaVIFDmDGTLvD 81 (175)
.++..|.-|+||||++
T Consensus 5 ~~~~lIFtDlD~TLl~ 20 (274)
T COG3769 5 QMPLLIFTDLDGTLLP 20 (274)
T ss_pred ccceEEEEcccCcccC
Confidence 4567888899999999
No 223
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=50.54 E-value=7.3 Score=34.61 Aligned_cols=25 Identities=8% Similarity=-0.060 Sum_probs=19.6
Q ss_pred HHHHHHHHHHCCCcEEEEcCCCCCC
Q 030531 148 TAQLCGFLDSKKIRSSSTVFKVSFF 172 (175)
Q Consensus 148 ~~e~L~~Lk~~gi~laIaTs~~~~f 172 (175)
+.-+|..+++.|.++-++||+--.|
T Consensus 203 ~v~~l~~~r~sGKk~fl~Tns~~~y 227 (424)
T KOG2469|consen 203 IVPLLSMLRDSGKKTFLHTNSDWDY 227 (424)
T ss_pred cccchHHHHhhccceEEeeccccch
Confidence 3348889999999999999865444
No 224
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=47.88 E-value=9.4 Score=30.14 Aligned_cols=17 Identities=24% Similarity=0.429 Sum_probs=14.6
Q ss_pred cceEEEeccccCccChh
Q 030531 68 LRGVVFDMDGTLTVPVI 84 (175)
Q Consensus 68 ikaVIFDmDGTLvDSe~ 84 (175)
.+++++|-||||.....
T Consensus 5 ~k~lflDRDGtin~d~~ 21 (181)
T COG0241 5 QKALFLDRDGTINIDKG 21 (181)
T ss_pred CcEEEEcCCCceecCCC
Confidence 68999999999987654
No 225
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=47.65 E-value=30 Score=26.92 Aligned_cols=30 Identities=13% Similarity=-0.082 Sum_probs=24.3
Q ss_pred CCCCCchhHHHHHHHHHHCCCc--EEEEcCCC
Q 030531 140 DRLQIMPGTAQLCGFLDSKKIR--SSSTVFKV 169 (175)
Q Consensus 140 ~~~~l~PG~~e~L~~Lk~~gi~--laIaTs~~ 169 (175)
+...+.|.+.+.++.|++.+.. +.|+||+.
T Consensus 56 ~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsa 87 (168)
T PF09419_consen 56 YEDEIPPEYAEWLNELKKQFGKDRVLIVSNSA 87 (168)
T ss_pred CcCcCCHHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 3456778899999999987664 99999985
No 226
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=47.27 E-value=28 Score=24.57 Aligned_cols=26 Identities=12% Similarity=0.037 Sum_probs=22.3
Q ss_pred chhHHHHHHHHHHCCCcEEEEcCCCC
Q 030531 145 MPGTAQLCGFLDSKKIRSSSTVFKVS 170 (175)
Q Consensus 145 ~PG~~e~L~~Lk~~gi~laIaTs~~~ 170 (175)
-+.+.+.++.++++|.++..+|++..
T Consensus 59 t~e~~~~~~~a~~~g~~vi~iT~~~~ 84 (126)
T cd05008 59 TADTLAALRLAKEKGAKTVAITNVVG 84 (126)
T ss_pred CHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 46789999999999999999998753
No 227
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=47.20 E-value=20 Score=29.92 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=18.8
Q ss_pred CCCCCCCCcceEEEeccccCccCh
Q 030531 60 SPPKPKTRLRGVVFDMDGTLTVPV 83 (175)
Q Consensus 60 ~~~~~~~~ikaVIFDmDGTLvDSe 83 (175)
+......+-|.++.|+|+||+.|.
T Consensus 81 ~~~~~~~~kk~lVLDLDeTLvHss 104 (262)
T KOG1605|consen 81 PLRLATVGRKTLVLDLDETLVHSS 104 (262)
T ss_pred CcccccCCCceEEEeCCCcccccc
Confidence 334445567899999999999987
No 228
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=47.03 E-value=13 Score=30.90 Aligned_cols=30 Identities=10% Similarity=0.055 Sum_probs=21.6
Q ss_pred CCCCCCchhHHHHHHHHHHCCCcEEEEcCC
Q 030531 139 LDRLQIMPGTAQLCGFLDSKKIRSSSTVFK 168 (175)
Q Consensus 139 ~~~~~l~PG~~e~L~~Lk~~gi~laIaTs~ 168 (175)
...+.+.+|+.++++.|+++++|+-|.|.+
T Consensus 86 ~s~i~LRdg~~~~f~~L~~~~IP~lIFSAG 115 (246)
T PF05822_consen 86 ESDIMLRDGVEEFFDKLEEHNIPLLIFSAG 115 (246)
T ss_dssp CS---B-BTHHHHHHHHHCTT--EEEEEEE
T ss_pred hcchhhhcCHHHHHHHHHhcCCCEEEEeCC
Confidence 357899999999999999999999999865
No 229
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=47.02 E-value=11 Score=29.05 Aligned_cols=28 Identities=14% Similarity=-0.004 Sum_probs=22.2
Q ss_pred CCCCCchhHHHHHHHHHHCCCcEEEEcCC
Q 030531 140 DRLQIMPGTAQLCGFLDSKKIRSSSTVFK 168 (175)
Q Consensus 140 ~~~~l~PG~~e~L~~Lk~~gi~laIaTs~ 168 (175)
.++.+.|++.++++.|-+ .+.+.|+|..
T Consensus 65 RnL~V~p~aq~v~keLt~-~y~vYivtaa 92 (180)
T COG4502 65 RNLGVQPFAQTVLKELTS-IYNVYIVTAA 92 (180)
T ss_pred hhcCccccHHHHHHHHHh-hheEEEEEec
Confidence 356788999999999977 4788888854
No 230
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=46.86 E-value=20 Score=34.77 Aligned_cols=27 Identities=11% Similarity=-0.134 Sum_probs=24.9
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEcCCC
Q 030531 143 QIMPGTAQLCGFLDSKKIRSSSTVFKV 169 (175)
Q Consensus 143 ~l~PG~~e~L~~Lk~~gi~laIaTs~~ 169 (175)
++.|++.+.++.|++.|+++.++|+..
T Consensus 515 p~R~~~~~aI~~l~~aGI~vvmiTGD~ 541 (867)
T TIGR01524 515 PPKESTKEAIAALFKNGINVKVLTGDN 541 (867)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcCCC
Confidence 678999999999999999999999754
No 231
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=46.55 E-value=29 Score=24.54 Aligned_cols=26 Identities=8% Similarity=-0.137 Sum_probs=22.6
Q ss_pred CchhHHHHHHHHHHCCCcEEEEcCCC
Q 030531 144 IMPGTAQLCGFLDSKKIRSSSTVFKV 169 (175)
Q Consensus 144 l~PG~~e~L~~Lk~~gi~laIaTs~~ 169 (175)
--+.+.+.++.++++|.++..+|++.
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~ 84 (128)
T cd05014 59 ETDELLNLLPHLKRRGAPIIAITGNP 84 (128)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 34779999999999999999999864
No 232
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=46.41 E-value=20 Score=35.07 Aligned_cols=27 Identities=7% Similarity=-0.116 Sum_probs=24.9
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEcCCC
Q 030531 143 QIMPGTAQLCGFLDSKKIRSSSTVFKV 169 (175)
Q Consensus 143 ~l~PG~~e~L~~Lk~~gi~laIaTs~~ 169 (175)
++.|++.+.++.|++.|+++.++|+..
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~ 576 (903)
T PRK15122 550 PPKESAAPAIAALRENGVAVKVLTGDN 576 (903)
T ss_pred ccHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 688999999999999999999999754
No 233
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=46.31 E-value=14 Score=30.15 Aligned_cols=15 Identities=53% Similarity=0.769 Sum_probs=12.9
Q ss_pred ceEEEeccccCccCh
Q 030531 69 RGVVFDMDGTLTVPV 83 (175)
Q Consensus 69 kaVIFDmDGTLvDSe 83 (175)
-.++||.||||.-..
T Consensus 12 ~l~lfdvdgtLt~~r 26 (252)
T KOG3189|consen 12 TLCLFDVDGTLTPPR 26 (252)
T ss_pred eEEEEecCCcccccc
Confidence 378899999998876
No 234
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=46.16 E-value=29 Score=26.24 Aligned_cols=26 Identities=8% Similarity=-0.070 Sum_probs=22.4
Q ss_pred CchhHHHHHHHHHHCCCcEEEEcCCC
Q 030531 144 IMPGTAQLCGFLDSKKIRSSSTVFKV 169 (175)
Q Consensus 144 l~PG~~e~L~~Lk~~gi~laIaTs~~ 169 (175)
..+.+.++++.+++.|++++|-||..
T Consensus 73 ~~~~l~~ll~~lk~~Gl~i~l~Tg~~ 98 (147)
T TIGR02826 73 NREALLSLLKIFKEKGLKTCLYTGLE 98 (147)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 34679999999999999999999754
No 235
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=45.52 E-value=23 Score=34.97 Aligned_cols=27 Identities=11% Similarity=-0.068 Sum_probs=25.1
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEcCCC
Q 030531 143 QIMPGTAQLCGFLDSKKIRSSSTVFKV 169 (175)
Q Consensus 143 ~l~PG~~e~L~~Lk~~gi~laIaTs~~ 169 (175)
++.|++.+.++.|+++|+++.++|+..
T Consensus 568 plr~~v~~aI~~l~~~Gi~v~~~TGd~ 594 (997)
T TIGR01106 568 PPRAAVPDAVGKCRSAGIKVIMVTGDH 594 (997)
T ss_pred CChHHHHHHHHHHHHCCCeEEEECCCC
Confidence 678999999999999999999999765
No 236
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=45.43 E-value=23 Score=30.14 Aligned_cols=27 Identities=11% Similarity=0.049 Sum_probs=22.5
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEcCCC
Q 030531 143 QIMPGTAQLCGFLDSKKIRSSSTVFKV 169 (175)
Q Consensus 143 ~l~PG~~e~L~~Lk~~gi~laIaTs~~ 169 (175)
-+.|++.++++.+++.|+.+.|.||+.
T Consensus 65 ll~~~~~~ii~~~~~~g~~~~l~TNG~ 91 (358)
T TIGR02109 65 LARPDLVELVAHARRLGLYTNLITSGV 91 (358)
T ss_pred cccccHHHHHHHHHHcCCeEEEEeCCc
Confidence 356888899999988898889998875
No 237
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=45.39 E-value=22 Score=34.81 Aligned_cols=28 Identities=11% Similarity=0.006 Sum_probs=25.4
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEcCCCC
Q 030531 143 QIMPGTAQLCGFLDSKKIRSSSTVFKVS 170 (175)
Q Consensus 143 ~l~PG~~e~L~~Lk~~gi~laIaTs~~~ 170 (175)
++.|++.+.++.|++.|+++.++|+...
T Consensus 579 plr~~~~~aI~~l~~aGI~v~miTGD~~ 606 (941)
T TIGR01517 579 PLRPGVREAVQECQRAGITVRMVTGDNI 606 (941)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCCh
Confidence 6889999999999999999999997653
No 238
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=45.11 E-value=21 Score=34.95 Aligned_cols=27 Identities=11% Similarity=-0.113 Sum_probs=24.8
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEcCCC
Q 030531 143 QIMPGTAQLCGFLDSKKIRSSSTVFKV 169 (175)
Q Consensus 143 ~l~PG~~e~L~~Lk~~gi~laIaTs~~ 169 (175)
++.|++.+.++.|++.|+++.++|+..
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~ 576 (902)
T PRK10517 550 PPKETTAPALKALKASGVTVKILTGDS 576 (902)
T ss_pred cchhhHHHHHHHHHHCCCEEEEEcCCC
Confidence 578999999999999999999999754
No 239
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=45.06 E-value=13 Score=33.34 Aligned_cols=32 Identities=9% Similarity=-0.120 Sum_probs=23.2
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEcCCCCCCc
Q 030531 142 LQIMPGTAQLCGFLDSKKIRSSSTVFKVSFFR 173 (175)
Q Consensus 142 ~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f~ 173 (175)
+..-|.+..+|+.|++.|.++-++||+.-.|+
T Consensus 182 i~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt 213 (448)
T PF05761_consen 182 IHKDPKLPPWLERLRSAGKKLFLITNSPFDYT 213 (448)
T ss_dssp EE--CHHHHHHHHHHCCT-EEEEE-SS-HHHH
T ss_pred ccCCchHHHHHHHHHhcCceEEEecCCCCchh
Confidence 34457899999999999999999999876554
No 240
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=45.01 E-value=22 Score=35.31 Aligned_cols=28 Identities=7% Similarity=-0.225 Sum_probs=25.5
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEcCCC
Q 030531 142 LQIMPGTAQLCGFLDSKKIRSSSTVFKV 169 (175)
Q Consensus 142 ~~l~PG~~e~L~~Lk~~gi~laIaTs~~ 169 (175)
-++.|++.+.++.|++.|+++.++|+..
T Consensus 645 Dp~r~~v~~aI~~l~~aGIkv~MiTGD~ 672 (1053)
T TIGR01523 645 DPPRNESAGAVEKCHQAGINVHMLTGDF 672 (1053)
T ss_pred cCCchhHHHHHHHHHHCCCEEEEECCCC
Confidence 3789999999999999999999999854
No 241
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=44.87 E-value=27 Score=28.03 Aligned_cols=27 Identities=4% Similarity=-0.071 Sum_probs=23.4
Q ss_pred Cchh-HHHHHHHHHHCCCcEEEEcCCCC
Q 030531 144 IMPG-TAQLCGFLDSKKIRSSSTVFKVS 170 (175)
Q Consensus 144 l~PG-~~e~L~~Lk~~gi~laIaTs~~~ 170 (175)
+.++ +.++++.+++.|+.++|-||+.-
T Consensus 51 lq~~fl~~l~~~~k~~gi~~~leTnG~~ 78 (213)
T PRK10076 51 MQAEFATRFLQRLRLWGVSCAIETAGDA 78 (213)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 4566 68999999999999999999854
No 242
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=44.59 E-value=24 Score=33.64 Aligned_cols=29 Identities=10% Similarity=0.021 Sum_probs=26.1
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEcCCCC
Q 030531 142 LQIMPGTAQLCGFLDSKKIRSSSTVFKVS 170 (175)
Q Consensus 142 ~~l~PG~~e~L~~Lk~~gi~laIaTs~~~ 170 (175)
-++.|++.|.++.|++.|+++.++|+-.+
T Consensus 536 D~~R~~a~~aI~~L~~~Gi~~~mLTGDn~ 564 (713)
T COG2217 536 DELRPDAKEAIAALKALGIKVVMLTGDNR 564 (713)
T ss_pred CCCChhHHHHHHHHHHCCCeEEEEcCCCH
Confidence 46899999999999999999999997654
No 243
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=44.33 E-value=25 Score=27.08 Aligned_cols=27 Identities=15% Similarity=0.122 Sum_probs=24.1
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEcCCC
Q 030531 143 QIMPGTAQLCGFLDSKKIRSSSTVFKV 169 (175)
Q Consensus 143 ~l~PG~~e~L~~Lk~~gi~laIaTs~~ 169 (175)
..-||+.++.+.++++||++.-+|+.+
T Consensus 27 ~~h~g~~~l~~~i~~~GY~ilYlTaRp 53 (157)
T PF08235_consen 27 WTHPGAAELYRKIADNGYKILYLTARP 53 (157)
T ss_pred hhhhcHHHHHHHHHHCCeEEEEECcCc
Confidence 567999999999999999999999765
No 244
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=43.71 E-value=32 Score=26.34 Aligned_cols=25 Identities=4% Similarity=-0.081 Sum_probs=17.7
Q ss_pred chhHHHHHHHHHHCCCcEEEEcCCC
Q 030531 145 MPGTAQLCGFLDSKKIRSSSTVFKV 169 (175)
Q Consensus 145 ~PG~~e~L~~Lk~~gi~laIaTs~~ 169 (175)
.|.+.++++.+++.|+.+.|.||+.
T Consensus 76 ~~~l~~li~~~~~~g~~v~i~TNg~ 100 (191)
T TIGR02495 76 QAGLPDFLRKVRELGFEVKLDTNGS 100 (191)
T ss_pred cHhHHHHHHHHHHCCCeEEEEeCCC
Confidence 4567777777777777777777764
No 245
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=43.52 E-value=19 Score=35.74 Aligned_cols=28 Identities=11% Similarity=0.020 Sum_probs=25.4
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEcCCC
Q 030531 142 LQIMPGTAQLCGFLDSKKIRSSSTVFKV 169 (175)
Q Consensus 142 ~~l~PG~~e~L~~Lk~~gi~laIaTs~~ 169 (175)
-++.||+.|.++.|++.|+++.++|+..
T Consensus 630 D~lq~~v~etI~~L~~AGIkv~mlTGD~ 657 (1057)
T TIGR01652 630 DKLQEGVPETIELLRQAGIKIWVLTGDK 657 (1057)
T ss_pred hhhhhccHHHHHHHHHCCCeEEEEcCCc
Confidence 4689999999999999999999999753
No 246
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=43.23 E-value=34 Score=30.33 Aligned_cols=30 Identities=10% Similarity=-0.018 Sum_probs=25.4
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEE-cCCCC
Q 030531 141 RLQIMPGTAQLCGFLDSKKIRSSST-VFKVS 170 (175)
Q Consensus 141 ~~~l~PG~~e~L~~Lk~~gi~laIa-Ts~~~ 170 (175)
..-..|.+.|+|+.+++.|++++|. ||+..
T Consensus 84 epl~~~~l~eLl~~lk~~gi~taI~~TnG~~ 114 (404)
T TIGR03278 84 DVSCYPELEELTKGLSDLGLPIHLGYTSGKG 114 (404)
T ss_pred ccccCHHHHHHHHHHHhCCCCEEEeCCCCcc
Confidence 4456799999999999999999996 98653
No 247
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=43.17 E-value=27 Score=28.87 Aligned_cols=30 Identities=3% Similarity=-0.178 Sum_probs=25.6
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEcCCCC
Q 030531 141 RLQIMPGTAQLCGFLDSKKIRSSSTVFKVS 170 (175)
Q Consensus 141 ~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~ 170 (175)
...-.+.+.++++.+++.|+++++.||+.-
T Consensus 94 P~~q~e~~~~~~~~ake~Gl~~~l~TnG~~ 123 (260)
T COG1180 94 PTLQAEFALDLLRAAKERGLHVALDTNGFL 123 (260)
T ss_pred chhhHHHHHHHHHHHHHCCCcEEEEcCCCC
Confidence 344568899999999999999999999753
No 248
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=43.14 E-value=1.3e+02 Score=25.22 Aligned_cols=27 Identities=11% Similarity=0.185 Sum_probs=20.0
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEcC
Q 030531 141 RLQIMPGTAQLCGFLDSKKIRSSSTVF 167 (175)
Q Consensus 141 ~~~l~PG~~e~L~~Lk~~gi~laIaTs 167 (175)
...+.||+.|+++.|.++=-+..+-||
T Consensus 81 sa~lvPgA~etm~~l~~~~tp~v~STS 107 (315)
T COG4030 81 SAKLVPGAEETMATLQERWTPVVISTS 107 (315)
T ss_pred hcccCCChHHHHHHHhccCCceEEecc
Confidence 467999999999999876444444443
No 249
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=42.44 E-value=13 Score=33.47 Aligned_cols=19 Identities=32% Similarity=0.242 Sum_probs=13.1
Q ss_pred CCCcceEEEeccccCccCh
Q 030531 65 KTRLRGVVFDMDGTLTVPV 83 (175)
Q Consensus 65 ~~~ikaVIFDmDGTLvDSe 83 (175)
...|++|-||||-||+--.
T Consensus 9 l~~i~~iGFDmDyTLa~Y~ 27 (448)
T PF05761_consen 9 LKDIDVIGFDMDYTLARYK 27 (448)
T ss_dssp CCC--EEEE-TBTTTBEE-
T ss_pred cccCCEEEECcccchhhcC
Confidence 4579999999999999765
No 250
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=42.40 E-value=25 Score=29.79 Aligned_cols=27 Identities=11% Similarity=-0.001 Sum_probs=22.9
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEcCCC
Q 030531 143 QIMPGTAQLCGFLDSKKIRSSSTVFKV 169 (175)
Q Consensus 143 ~l~PG~~e~L~~Lk~~gi~laIaTs~~ 169 (175)
-+.|.+.++++.++++|..+.|.||+.
T Consensus 84 LL~pdl~eiv~~~~~~g~~v~l~TNG~ 110 (318)
T TIGR03470 84 LLHPEIDEIVRGLVARKKFVYLCTNAL 110 (318)
T ss_pred cccccHHHHHHHHHHcCCeEEEecCce
Confidence 356889999999999899999999875
No 251
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=41.81 E-value=38 Score=23.74 Aligned_cols=24 Identities=4% Similarity=-0.014 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHCCCcEEEEcCCC
Q 030531 146 PGTAQLCGFLDSKKIRSSSTVFKV 169 (175)
Q Consensus 146 PG~~e~L~~Lk~~gi~laIaTs~~ 169 (175)
+.+.+.++.++++|.++.++|++.
T Consensus 74 ~~~~~~~~~a~~~g~~iv~iT~~~ 97 (139)
T cd05013 74 KETVEAAEIAKERGAKVIAITDSA 97 (139)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCC
Confidence 668899999999999999999865
No 252
>TIGR02097 yccV hemimethylated DNA binding domain. This model describes the small protein from E. coli YccV and its homologs in other Proteobacteria. YccV is now described as a hemimethylated DNA binding protein. The model also describes a domain in longer eukaryotic proteins.
Probab=41.56 E-value=24 Score=25.22 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=19.1
Q ss_pred CcceEEEeccccCccChhhHHHH
Q 030531 67 RLRGVVFDMDGTLTVPVIDFPAM 89 (175)
Q Consensus 67 ~ikaVIFDmDGTLvDSe~~~~a~ 89 (175)
.+++||+|+|-....++.++..+
T Consensus 16 ~yrGVI~gwDp~~~~~eeW~~~~ 38 (101)
T TIGR02097 16 GYRGVVIDVDPEYSNTEEWLDAI 38 (101)
T ss_pred CCCEEEEeEChhccCChHHHHhh
Confidence 48999999999999998655555
No 253
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=40.84 E-value=31 Score=30.97 Aligned_cols=29 Identities=10% Similarity=-0.112 Sum_probs=26.1
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEcCCCC
Q 030531 142 LQIMPGTAQLCGFLDSKKIRSSSTVFKVS 170 (175)
Q Consensus 142 ~~l~PG~~e~L~~Lk~~gi~laIaTs~~~ 170 (175)
-++.|++.++++.|++.|+++.++|+...
T Consensus 346 d~lr~~~~~~i~~l~~~gi~~~~ltGD~~ 374 (499)
T TIGR01494 346 DPLRDDAKETISELREAGIRVIMLTGDNV 374 (499)
T ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCH
Confidence 37899999999999999999999998654
No 254
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=40.65 E-value=33 Score=29.52 Aligned_cols=29 Identities=7% Similarity=-0.025 Sum_probs=23.8
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEcCCC
Q 030531 141 RLQIMPGTAQLCGFLDSKKIRSSSTVFKV 169 (175)
Q Consensus 141 ~~~l~PG~~e~L~~Lk~~gi~laIaTs~~ 169 (175)
+.-+.|++.++++.++++|+.+.|.||+.
T Consensus 72 EPll~~~~~~il~~~~~~g~~~~i~TNG~ 100 (378)
T PRK05301 72 EPLLRKDLEELVAHARELGLYTNLITSGV 100 (378)
T ss_pred ccCCchhHHHHHHHHHHcCCcEEEECCCc
Confidence 33456889999999998899999999875
No 255
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=40.37 E-value=69 Score=25.72 Aligned_cols=20 Identities=30% Similarity=0.321 Sum_probs=16.5
Q ss_pred cceEEEeccccCccChhhHH
Q 030531 68 LRGVVFDMDGTLTVPVIDFP 87 (175)
Q Consensus 68 ikaVIFDmDGTLvDSe~~~~ 87 (175)
.=+|-||.|.|++=|.+.|.
T Consensus 63 Pi~VsFDIDDTvLFsSp~F~ 82 (237)
T COG3700 63 PIAVSFDIDDTVLFSSPGFW 82 (237)
T ss_pred CeeEeeccCCeeEecccccc
Confidence 44889999999999987654
No 256
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=39.98 E-value=40 Score=27.07 Aligned_cols=27 Identities=4% Similarity=-0.059 Sum_probs=22.7
Q ss_pred Cchh-HHHHHHHHHHCCCcEEEEcCCCC
Q 030531 144 IMPG-TAQLCGFLDSKKIRSSSTVFKVS 170 (175)
Q Consensus 144 l~PG-~~e~L~~Lk~~gi~laIaTs~~~ 170 (175)
+.++ +.++++.+++.|+++++.||+..
T Consensus 83 l~~~~~~~l~~~~k~~g~~i~l~TNG~~ 110 (246)
T PRK11145 83 LQAEFVRDWFRACKKEGIHTCLDTNGFV 110 (246)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 4566 46999999999999999999863
No 257
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=39.33 E-value=41 Score=25.55 Aligned_cols=25 Identities=0% Similarity=-0.148 Sum_probs=22.1
Q ss_pred chhHHHHHHHHHHCCCcEEEEcCCC
Q 030531 145 MPGTAQLCGFLDSKKIRSSSTVFKV 169 (175)
Q Consensus 145 ~PG~~e~L~~Lk~~gi~laIaTs~~ 169 (175)
-+.+.+.++.++++|.++..+|++.
T Consensus 85 t~~~i~~~~~ak~~g~~ii~IT~~~ 109 (179)
T TIGR03127 85 TESLVTVAKKAKEIGATVAAITTNP 109 (179)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCC
Confidence 4778999999999999999999864
No 258
>PLN02887 hydrolase family protein
Probab=39.13 E-value=36 Score=31.67 Aligned_cols=28 Identities=18% Similarity=-0.003 Sum_probs=24.5
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEcCCCC
Q 030531 143 QIMPGTAQLCGFLDSKKIRSSSTVFKVS 170 (175)
Q Consensus 143 ~l~PG~~e~L~~Lk~~gi~laIaTs~~~ 170 (175)
.+-+...+.|++|+++|+.++|+|+.+-
T Consensus 325 ~Is~~t~eAI~kl~ekGi~~vIATGR~~ 352 (580)
T PLN02887 325 QISETNAKALKEALSRGVKVVIATGKAR 352 (580)
T ss_pred ccCHHHHHHHHHHHHCCCeEEEEcCCCH
Confidence 4567889999999999999999998763
No 259
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=38.44 E-value=2.2e+02 Score=23.73 Aligned_cols=28 Identities=4% Similarity=-0.102 Sum_probs=25.7
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEcCCC
Q 030531 142 LQIMPGTAQLCGFLDSKKIRSSSTVFKV 169 (175)
Q Consensus 142 ~~l~PG~~e~L~~Lk~~gi~laIaTs~~ 169 (175)
...++++...++..++.|+++.|-|+++
T Consensus 122 ~~v~aDv~~a~e~w~~~g~~vyIYSSgs 149 (254)
T KOG2630|consen 122 AHVYADVLPAIERWSGEGVRVYIYSSGS 149 (254)
T ss_pred ccccchhHHHHHHHhhcCceEEEEcCCc
Confidence 4789999999999999999999999875
No 260
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=38.37 E-value=11 Score=25.44 Aligned_cols=10 Identities=50% Similarity=0.919 Sum_probs=8.9
Q ss_pred EEEeccccCc
Q 030531 71 VVFDMDGTLT 80 (175)
Q Consensus 71 VIFDmDGTLv 80 (175)
+=|||||.|+
T Consensus 3 ~RFdf~G~l~ 12 (73)
T PF08620_consen 3 LRFDFDGNLL 12 (73)
T ss_pred ccccCCCCEe
Confidence 4599999999
No 261
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=38.02 E-value=35 Score=33.91 Aligned_cols=28 Identities=18% Similarity=0.118 Sum_probs=25.6
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEcCCC
Q 030531 142 LQIMPGTAQLCGFLDSKKIRSSSTVFKV 169 (175)
Q Consensus 142 ~~l~PG~~e~L~~Lk~~gi~laIaTs~~ 169 (175)
-++.|++.+.++.|++.|+++.++|+..
T Consensus 655 d~lr~~~~~~I~~l~~agi~v~miTGD~ 682 (1054)
T TIGR01657 655 NPLKPDTKEVIKELKRASIRTVMITGDN 682 (1054)
T ss_pred cCCCccHHHHHHHHHHCCCeEEEECCCC
Confidence 4689999999999999999999999754
No 262
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=37.91 E-value=48 Score=23.62 Aligned_cols=26 Identities=12% Similarity=-0.034 Sum_probs=22.2
Q ss_pred chhHHHHHHHHHHCCCcEEEEcCCCC
Q 030531 145 MPGTAQLCGFLDSKKIRSSSTVFKVS 170 (175)
Q Consensus 145 ~PG~~e~L~~Lk~~gi~laIaTs~~~ 170 (175)
-+.+.+.++.++++|.++..+|++..
T Consensus 60 t~~~~~~~~~a~~~g~~vi~iT~~~~ 85 (120)
T cd05710 60 TKETVAAAKFAKEKGATVIGLTDDED 85 (120)
T ss_pred ChHHHHHHHHHHHcCCeEEEEECCCC
Confidence 47889999999999999999997643
No 263
>PF10855 DUF2648: Protein of unknown function (DUF2648); InterPro: IPR022561 This family of proteins with unknown function appears to be restricted to eubacteia.
Probab=37.89 E-value=10 Score=21.43 Aligned_cols=12 Identities=50% Similarity=0.659 Sum_probs=10.4
Q ss_pred hhhhcccCccch
Q 030531 20 SKYQNHHKFMPL 31 (175)
Q Consensus 20 ~~~~~~~~~~~~ 31 (175)
-|||||-|.||-
T Consensus 19 KKyQ~~vnqapn 30 (33)
T PF10855_consen 19 KKYQNHVNQAPN 30 (33)
T ss_pred HHHHHHHhcCCC
Confidence 489999999984
No 264
>PF04037 DUF382: Domain of unknown function (DUF382) ; InterPro: IPR007180 This domain is specific to the human splicing factor 3b subunit 2 and its orthologs.; GO: 0005634 nucleus
Probab=36.70 E-value=13 Score=27.82 Aligned_cols=16 Identities=31% Similarity=0.492 Sum_probs=12.8
Q ss_pred ceeEeecCchhhhhhh
Q 030531 8 LTLTVQIPSHFLSKYQ 23 (175)
Q Consensus 8 ~~~~~~~~~~~~~~~~ 23 (175)
..=||.+|+|+++|++
T Consensus 26 ~rNtVPVP~HW~~Kr~ 41 (129)
T PF04037_consen 26 YRNTVPVPRHWSQKRK 41 (129)
T ss_pred cCCCCCCCcchhhhhh
Confidence 3447999999999875
No 265
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=36.68 E-value=46 Score=23.58 Aligned_cols=25 Identities=4% Similarity=-0.150 Sum_probs=19.6
Q ss_pred chhHHHHHHHHHHCCCcEEEEcCCC
Q 030531 145 MPGTAQLCGFLDSKKIRSSSTVFKV 169 (175)
Q Consensus 145 ~PG~~e~L~~Lk~~gi~laIaTs~~ 169 (175)
-+.+.+.++.++++|.++..+|++.
T Consensus 56 t~e~i~~~~~a~~~g~~iI~IT~~~ 80 (119)
T cd05017 56 TEETLSAVEQAKERGAKIVAITSGG 80 (119)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3677888888888888888888654
No 266
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=36.47 E-value=36 Score=33.33 Aligned_cols=29 Identities=7% Similarity=-0.205 Sum_probs=25.8
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEcCCC
Q 030531 141 RLQIMPGTAQLCGFLDSKKIRSSSTVFKV 169 (175)
Q Consensus 141 ~~~l~PG~~e~L~~Lk~~gi~laIaTs~~ 169 (175)
.-+|.|++++.++.|++.|+++-++|+-.
T Consensus 545 ~Dppr~~v~~aI~~l~~AGI~v~MiTGD~ 573 (917)
T COG0474 545 EDPPREDVKEAIEELREAGIKVWMITGDH 573 (917)
T ss_pred cCCCCccHHHHHHHHHHCCCcEEEECCCC
Confidence 34789999999999999999999999753
No 267
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=36.23 E-value=37 Score=27.24 Aligned_cols=26 Identities=15% Similarity=0.102 Sum_probs=23.4
Q ss_pred chhHHHHHHHHHHCCCcEEEEcCCCC
Q 030531 145 MPGTAQLCGFLDSKKIRSSSTVFKVS 170 (175)
Q Consensus 145 ~PG~~e~L~~Lk~~gi~laIaTs~~~ 170 (175)
.|++.++++.|+++|+++.+=||++-
T Consensus 85 ~~~l~~Ll~~l~~~g~~~~lETngti 110 (212)
T COG0602 85 QPNLLELLELLKRLGFRIALETNGTI 110 (212)
T ss_pred cccHHHHHHHHHhCCceEEecCCCCc
Confidence 45899999999999999999998764
No 268
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=35.67 E-value=25 Score=27.97 Aligned_cols=30 Identities=3% Similarity=-0.235 Sum_probs=25.2
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEcCCCCCC
Q 030531 142 LQIMPGTAQLCGFLDSKKIRSSSTVFKVSFF 172 (175)
Q Consensus 142 ~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~f 172 (175)
....||+.|||+.+.+ .+.++|-|+....+
T Consensus 44 ~~kRP~l~eFL~~~~~-~feIvVwTAa~~~y 73 (195)
T TIGR02245 44 ELMRPYLHEFLTSAYE-DYDIVIWSATSMKW 73 (195)
T ss_pred EEeCCCHHHHHHHHHh-CCEEEEEecCCHHH
Confidence 4568999999999987 79999999876544
No 269
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=35.65 E-value=54 Score=22.96 Aligned_cols=26 Identities=8% Similarity=-0.074 Sum_probs=22.0
Q ss_pred CchhHHHHHHHHHHCCCcEEEEcCCC
Q 030531 144 IMPGTAQLCGFLDSKKIRSSSTVFKV 169 (175)
Q Consensus 144 l~PG~~e~L~~Lk~~gi~laIaTs~~ 169 (175)
--....+.++.++++|.++.++|++.
T Consensus 65 ~~~~~~~~~~~ak~~g~~vi~iT~~~ 90 (131)
T PF01380_consen 65 ETRELIELLRFAKERGAPVILITSNS 90 (131)
T ss_dssp TTHHHHHHHHHHHHTTSEEEEEESST
T ss_pred cchhhhhhhHHHHhcCCeEEEEeCCC
Confidence 34678899999999999999999764
No 270
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=34.99 E-value=49 Score=21.00 Aligned_cols=21 Identities=14% Similarity=-0.058 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHCCCcEEEEc
Q 030531 146 PGTAQLCGFLDSKKIRSSSTV 166 (175)
Q Consensus 146 PG~~e~L~~Lk~~gi~laIaT 166 (175)
|+-.+-|+.|.+.|.++.|.|
T Consensus 2 ~~~qegLr~L~~aG~~v~iM~ 22 (55)
T PF05240_consen 2 PDYQEGLRRLCQAGAQVSIMT 22 (55)
T ss_dssp HHHHHHHHHHHHTT-EEEE--
T ss_pred cHHHHHHHHHHHCCCeEEecC
Confidence 567889999999999999987
No 271
>PLN03190 aminophospholipid translocase; Provisional
Probab=33.82 E-value=42 Score=33.89 Aligned_cols=28 Identities=11% Similarity=-0.007 Sum_probs=25.5
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEcCCC
Q 030531 142 LQIMPGTAQLCGFLDSKKIRSSSTVFKV 169 (175)
Q Consensus 142 ~~l~PG~~e~L~~Lk~~gi~laIaTs~~ 169 (175)
-++.+|+.++++.|++.|+++.++|+..
T Consensus 725 D~lr~~v~~~I~~l~~agi~v~mlTGD~ 752 (1178)
T PLN03190 725 DKLQQGVPEAIESLRTAGIKVWVLTGDK 752 (1178)
T ss_pred cCCchhHHHHHHHHHHCCCEEEEECCCC
Confidence 3689999999999999999999999854
No 272
>PLN03017 trehalose-phosphatase
Probab=33.51 E-value=55 Score=28.74 Aligned_cols=29 Identities=7% Similarity=-0.142 Sum_probs=24.5
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEcCCCCC
Q 030531 142 LQIMPGTAQLCGFLDSKKIRSSSTVFKVSF 171 (175)
Q Consensus 142 ~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~ 171 (175)
..+-|+..+.|+.|. +|++++|+|+++..
T Consensus 132 a~i~~~~~~aL~~La-~~~~vaIvSGR~~~ 160 (366)
T PLN03017 132 AFMSSKMRRTVKKLA-KCFPTAIVTGRCID 160 (366)
T ss_pred ccCCHHHHHHHHHHh-cCCcEEEEeCCCHH
Confidence 357789999999999 78999999987643
No 273
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=33.09 E-value=60 Score=24.27 Aligned_cols=27 Identities=7% Similarity=-0.082 Sum_probs=23.2
Q ss_pred CchhHHHHHHHHHHCCCcEEEEcCCCC
Q 030531 144 IMPGTAQLCGFLDSKKIRSSSTVFKVS 170 (175)
Q Consensus 144 l~PG~~e~L~~Lk~~gi~laIaTs~~~ 170 (175)
--+.+.+.++.++++|.++..+|++..
T Consensus 91 ~t~~~~~~~~~a~~~g~~ii~iT~~~~ 117 (154)
T TIGR00441 91 NSKNVLKAIEAAKDKGMKTITLAGKDG 117 (154)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 357899999999999999999998653
No 274
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=33.02 E-value=59 Score=24.69 Aligned_cols=26 Identities=4% Similarity=-0.014 Sum_probs=22.9
Q ss_pred CchhHHHHHHHHHHCCCcEEEEcCCC
Q 030531 144 IMPGTAQLCGFLDSKKIRSSSTVFKV 169 (175)
Q Consensus 144 l~PG~~e~L~~Lk~~gi~laIaTs~~ 169 (175)
--+.+.+.++.++++|.++..+|++.
T Consensus 113 ~t~~~i~~~~~ak~~Ga~vI~IT~~~ 138 (177)
T cd05006 113 NSPNVLKALEAAKERGMKTIALTGRD 138 (177)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 34789999999999999999999764
No 275
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=32.78 E-value=45 Score=27.31 Aligned_cols=25 Identities=8% Similarity=0.064 Sum_probs=22.2
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEcC
Q 030531 143 QIMPGTAQLCGFLDSKKIRSSSTVF 167 (175)
Q Consensus 143 ~l~PG~~e~L~~Lk~~gi~laIaTs 167 (175)
.-+|+..++++.|+++|+++.+..+
T Consensus 63 ~~Fpdp~~~i~~l~~~g~~~~~~~~ 87 (265)
T cd06589 63 GKFPNPKSMIDELHDNGVKLVLWID 87 (265)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEEeC
Confidence 4689999999999999999998764
No 276
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=31.43 E-value=44 Score=29.76 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=13.4
Q ss_pred cceEEEeccccCccCh
Q 030531 68 LRGVVFDMDGTLTVPV 83 (175)
Q Consensus 68 ikaVIFDmDGTLvDSe 83 (175)
-|.+|||||-|||=..
T Consensus 197 eRVFiWDlDEtiIifh 212 (468)
T KOG3107|consen 197 ERVFIWDLDETIIIFH 212 (468)
T ss_pred eeEEEeeccchHHHHH
Confidence 4789999999998664
No 277
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=31.13 E-value=56 Score=31.15 Aligned_cols=28 Identities=11% Similarity=-0.067 Sum_probs=24.0
Q ss_pred CchhHHHHHHHHHHCCCcEEEEcCCCCC
Q 030531 144 IMPGTAQLCGFLDSKKIRSSSTVFKVSF 171 (175)
Q Consensus 144 l~PG~~e~L~~Lk~~gi~laIaTs~~~~ 171 (175)
..+...+.|+.|+++|++++++|+++..
T Consensus 434 i~~~t~eAL~~L~ekGI~~VIATGRs~~ 461 (694)
T PRK14502 434 SYSTALDALRLLKDKELPLVFCSAKTMG 461 (694)
T ss_pred cCHHHHHHHHHHHHcCCeEEEEeCCCHH
Confidence 4567899999999999999999988643
No 278
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=30.72 E-value=22 Score=29.74 Aligned_cols=15 Identities=27% Similarity=0.268 Sum_probs=13.2
Q ss_pred eEEEeccccCccChh
Q 030531 70 GVVFDMDGTLTVPVI 84 (175)
Q Consensus 70 aVIFDmDGTLvDSe~ 84 (175)
-|.||.||+|.+.+.
T Consensus 123 RIAFDgDaVLfsDes 137 (264)
T PF06189_consen 123 RIAFDGDAVLFSDES 137 (264)
T ss_pred EEEEcCCeEeecCcc
Confidence 579999999999883
No 279
>PRK13937 phosphoheptose isomerase; Provisional
Probab=30.71 E-value=68 Score=24.89 Aligned_cols=26 Identities=4% Similarity=-0.129 Sum_probs=23.0
Q ss_pred CchhHHHHHHHHHHCCCcEEEEcCCC
Q 030531 144 IMPGTAQLCGFLDSKKIRSSSTVFKV 169 (175)
Q Consensus 144 l~PG~~e~L~~Lk~~gi~laIaTs~~ 169 (175)
--+.+.+.++.++++|.++..+|++.
T Consensus 118 ~t~~~~~~~~~ak~~g~~~I~iT~~~ 143 (188)
T PRK13937 118 NSPNVLAALEKARELGMKTIGLTGRD 143 (188)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 35889999999999999999999864
No 280
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=30.58 E-value=22 Score=26.56 Aligned_cols=17 Identities=18% Similarity=0.145 Sum_probs=13.9
Q ss_pred CCCCCcceEEEeccccC
Q 030531 63 KPKTRLRGVVFDMDGTL 79 (175)
Q Consensus 63 ~~~~~ikaVIFDmDGTL 79 (175)
...+....|+|||+|||
T Consensus 40 ~~~~~P~iV~FDmK~Tl 56 (128)
T PRK13717 40 VRLNAPVTAAFNMKQTV 56 (128)
T ss_pred hhcCCCeEEEEehHHHH
Confidence 34556789999999999
No 281
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=30.15 E-value=67 Score=20.69 Aligned_cols=22 Identities=5% Similarity=-0.148 Sum_probs=19.2
Q ss_pred chhHHHHHHHHHHCCCcEEEEc
Q 030531 145 MPGTAQLCGFLDSKKIRSSSTV 166 (175)
Q Consensus 145 ~PG~~e~L~~Lk~~gi~laIaT 166 (175)
-+.+.++++.++++|.++..+|
T Consensus 60 t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 60 TEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CHHHHHHHHHHHHcCCeEEEEe
Confidence 4779999999999999988776
No 282
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=29.92 E-value=70 Score=25.29 Aligned_cols=26 Identities=12% Similarity=0.082 Sum_probs=22.1
Q ss_pred Cchh-HHHHHHHHHHCCCcEEEEcCCC
Q 030531 144 IMPG-TAQLCGFLDSKKIRSSSTVFKV 169 (175)
Q Consensus 144 l~PG-~~e~L~~Lk~~gi~laIaTs~~ 169 (175)
+.|+ +.++++.+++.|+++.+.||+.
T Consensus 78 l~~~~~~~li~~~~~~g~~~~i~TNG~ 104 (235)
T TIGR02493 78 LQPEFLSELFKACKELGIHTCLDTSGF 104 (235)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 4577 5699999999999999999983
No 283
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=29.91 E-value=64 Score=26.63 Aligned_cols=26 Identities=12% Similarity=0.094 Sum_probs=22.4
Q ss_pred CchhH-HHHHHHHHHCCCcEEEEcCCC
Q 030531 144 IMPGT-AQLCGFLDSKKIRSSSTVFKV 169 (175)
Q Consensus 144 l~PG~-~e~L~~Lk~~gi~laIaTs~~ 169 (175)
+.|+. .++++.+++.|+++.+.||+.
T Consensus 138 l~~~~l~~l~~~~k~~g~~~~i~TnG~ 164 (295)
T TIGR02494 138 LQPEFALALLQACHERGIHTAVETSGF 164 (295)
T ss_pred chHHHHHHHHHHHHHcCCcEeeeCCCC
Confidence 45774 699999999999999999975
No 284
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=29.88 E-value=72 Score=24.25 Aligned_cols=25 Identities=0% Similarity=-0.163 Sum_probs=22.0
Q ss_pred chhHHHHHHHHHHCCCcEEEEcCCC
Q 030531 145 MPGTAQLCGFLDSKKIRSSSTVFKV 169 (175)
Q Consensus 145 ~PG~~e~L~~Lk~~gi~laIaTs~~ 169 (175)
-+.+.++++.++++|.++..+|++.
T Consensus 88 t~~~i~~~~~ak~~g~~iI~IT~~~ 112 (179)
T cd05005 88 TSSVVNAAEKAKKAGAKVVLITSNP 112 (179)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCC
Confidence 4788999999999999999999754
No 285
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=28.27 E-value=33 Score=31.46 Aligned_cols=17 Identities=35% Similarity=0.436 Sum_probs=14.4
Q ss_pred CcceEEEeccccCccCh
Q 030531 67 RLRGVVFDMDGTLTVPV 83 (175)
Q Consensus 67 ~ikaVIFDmDGTLvDSe 83 (175)
..|+++.|+||||+--.
T Consensus 221 ~kK~LVLDLDNTLWGGV 237 (574)
T COG3882 221 SKKALVLDLDNTLWGGV 237 (574)
T ss_pred ccceEEEecCCcccccc
Confidence 47899999999998664
No 286
>PF13588 HSDR_N_2: Type I restriction enzyme R protein N terminus (HSDR_N); PDB: 3H1T_A.
Probab=27.61 E-value=43 Score=23.42 Aligned_cols=27 Identities=11% Similarity=-0.028 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHCCCcEEEEcCCCCCC
Q 030531 146 PGTAQLCGFLDSKKIRSSSTVFKVSFF 172 (175)
Q Consensus 146 PG~~e~L~~Lk~~gi~laIaTs~~~~f 172 (175)
.++.++..++...+.+.||+||+...+
T Consensus 68 ~~~~Q~~~Y~~~~~~~~~i~tNG~~~~ 94 (112)
T PF13588_consen 68 KAVEQLKSYARALGAPYGILTNGKEFR 94 (112)
T ss_dssp -SHHHHHHHHHHHT-SEEEEE-SS-EE
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCeEE
Confidence 478888888888899999999987654
No 287
>PF08494 DEAD_assoc: DEAD/H associated; InterPro: IPR013701 This domain is found in ATP-dependent helicases as well as a number of hypothetical proteins together with the helicase conserved C-terminal domain (IPR011545 from INTERPRO) and the IPR001650 from INTERPRO domain. ; GO: 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
Probab=27.59 E-value=1.3e+02 Score=23.41 Aligned_cols=29 Identities=17% Similarity=0.052 Sum_probs=23.4
Q ss_pred chhHHHHHHHHHHCCCcEEEEcCCCCCCcc
Q 030531 145 MPGTAQLCGFLDSKKIRSSSTVFKVSFFRH 174 (175)
Q Consensus 145 ~PG~~e~L~~Lk~~gi~laIaTs~~~~f~~ 174 (175)
.+++.++|+.+++..+.+.. +..++.|.+
T Consensus 159 i~~~~~~L~~i~~g~i~i~~-~~~pSPla~ 187 (187)
T PF08494_consen 159 IERLRELLERIRSGEIRIVV-TPEPSPLAF 187 (187)
T ss_pred HHHHHHHHHHHHcCcEEEEE-CCCCCCCCC
Confidence 78999999999987776666 778877753
No 288
>PLN02588 glycerol-3-phosphate acyltransferase
Probab=27.22 E-value=62 Score=29.78 Aligned_cols=19 Identities=16% Similarity=0.357 Sum_probs=15.6
Q ss_pred CCCcceEEEeccccCccCh
Q 030531 65 KTRLRGVVFDMDGTLTVPV 83 (175)
Q Consensus 65 ~~~ikaVIFDmDGTLvDSe 83 (175)
...-+.++.|+||||+-|.
T Consensus 47 ~~~~~t~v~d~~g~Ll~s~ 65 (525)
T PLN02588 47 DLSNHTLIFNVEGALLKSN 65 (525)
T ss_pred ccccceEEEecccceeccC
Confidence 3345679999999999887
No 289
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.19 E-value=78 Score=21.17 Aligned_cols=23 Identities=17% Similarity=-0.078 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHCCCcEEEEcCCC
Q 030531 147 GTAQLCGFLDSKKIRSSSTVFKV 169 (175)
Q Consensus 147 G~~e~L~~Lk~~gi~laIaTs~~ 169 (175)
...++++.|+++|+++-+.|++.
T Consensus 54 ~~~~i~~~L~~~G~~~~~~~~~~ 76 (85)
T cd04906 54 ELAELLEDLKSAGYEVVDLSDDE 76 (85)
T ss_pred HHHHHHHHHHHCCCCeEECCCCH
Confidence 38899999999999998888664
No 290
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=25.62 E-value=71 Score=26.65 Aligned_cols=25 Identities=12% Similarity=0.332 Sum_probs=22.1
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEcC
Q 030531 143 QIMPGTAQLCGFLDSKKIRSSSTVF 167 (175)
Q Consensus 143 ~l~PG~~e~L~~Lk~~gi~laIaTs 167 (175)
..+|+..++++.|+++|+++.+...
T Consensus 71 ~~FPdp~~mi~~Lh~~G~k~v~~v~ 95 (292)
T cd06595 71 KLFPDPEKLLQDLHDRGLKVTLNLH 95 (292)
T ss_pred hcCCCHHHHHHHHHHCCCEEEEEeC
Confidence 4689999999999999999988764
No 291
>PF06901 FrpC: RTX iron-regulated protein FrpC; InterPro: IPR010692 This family consists of several RTX iron-regulated FrpC proteins which appear to be found exclusively in Neisseria meningitidis. FrpC has been shown to be related to the RTX family of bacterial cytotoxins. FrpC is found in the meningococcal outer membrane. The function of this family is unknown although it is thought to be a virulence factor [].
Probab=25.34 E-value=35 Score=27.64 Aligned_cols=15 Identities=40% Similarity=0.501 Sum_probs=12.3
Q ss_pred ceEEEeccccCccCh
Q 030531 69 RGVVFDMDGTLTVPV 83 (175)
Q Consensus 69 kaVIFDmDGTLvDSe 83 (175)
+.|-||+|||+.---
T Consensus 59 ~~v~~D~~GT~m~iP 73 (271)
T PF06901_consen 59 HTVTFDFQGTKMVIP 73 (271)
T ss_pred eeEEEeccceEEEee
Confidence 578899999997554
No 292
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=24.96 E-value=99 Score=24.17 Aligned_cols=25 Identities=8% Similarity=-0.110 Sum_probs=22.6
Q ss_pred chhHHHHHHHHHHCCCcEEEEcCCC
Q 030531 145 MPGTAQLCGFLDSKKIRSSSTVFKV 169 (175)
Q Consensus 145 ~PG~~e~L~~Lk~~gi~laIaTs~~ 169 (175)
-+.+.+.++.++++|.++..+|++.
T Consensus 124 t~~~i~~~~~ak~~g~~iI~iT~~~ 148 (192)
T PRK00414 124 SGNIIKAIEAARAKGMKVITLTGKD 148 (192)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 5889999999999999999999864
No 293
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=24.96 E-value=42 Score=27.60 Aligned_cols=20 Identities=30% Similarity=0.602 Sum_probs=17.4
Q ss_pred CCCcceEEEeccccCccChh
Q 030531 65 KTRLRGVVFDMDGTLTVPVI 84 (175)
Q Consensus 65 ~~~ikaVIFDmDGTLvDSe~ 84 (175)
.+.+++|+.|+-|||.++..
T Consensus 4 ~~~v~gvLlDlSGtLh~e~~ 23 (262)
T KOG3040|consen 4 GRAVKGVLLDLSGTLHIEDA 23 (262)
T ss_pred ccccceEEEeccceEecccc
Confidence 45689999999999999983
No 294
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=24.85 E-value=65 Score=27.04 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=21.4
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEc
Q 030531 143 QIMPGTAQLCGFLDSKKIRSSSTV 166 (175)
Q Consensus 143 ~l~PG~~e~L~~Lk~~gi~laIaT 166 (175)
.-+|+..++++.|+++|+++++..
T Consensus 67 ~~FPdp~~mi~~l~~~G~k~~l~i 90 (303)
T cd06592 67 TKFPDPKGMIDQLHDLGFRVTLWV 90 (303)
T ss_pred hhCCCHHHHHHHHHHCCCeEEEEE
Confidence 468999999999999999998865
No 295
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=24.76 E-value=77 Score=26.23 Aligned_cols=24 Identities=13% Similarity=-0.035 Sum_probs=13.3
Q ss_pred chhHHHHHHHHHHCCC-cEEEEcCC
Q 030531 145 MPGTAQLCGFLDSKKI-RSSSTVFK 168 (175)
Q Consensus 145 ~PG~~e~L~~Lk~~gi-~laIaTs~ 168 (175)
.+++.++++.+++.|+ .+.|.||+
T Consensus 70 ~~~l~~iv~~l~~~g~~~v~i~TNG 94 (302)
T TIGR02668 70 RKDLIEIIRRIKDYGIKDVSMTTNG 94 (302)
T ss_pred ccCHHHHHHHHHhCCCceEEEEcCc
Confidence 3455555555555555 55555554
No 296
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=24.34 E-value=46 Score=23.92 Aligned_cols=17 Identities=35% Similarity=0.565 Sum_probs=14.1
Q ss_pred CcceEEEeccccCcc-Ch
Q 030531 67 RLRGVVFDMDGTLTV-PV 83 (175)
Q Consensus 67 ~ikaVIFDmDGTLvD-Se 83 (175)
..++-|||=||+|+= |.
T Consensus 18 ~~RARlyd~dG~Ll~DSr 35 (112)
T PF13756_consen 18 RTRARLYDPDGNLLADSR 35 (112)
T ss_pred CceEEEECCCCCEEeecc
Confidence 578999999999874 54
No 297
>PRK13938 phosphoheptose isomerase; Provisional
Probab=24.30 E-value=1e+02 Score=24.40 Aligned_cols=26 Identities=0% Similarity=-0.187 Sum_probs=22.8
Q ss_pred chhHHHHHHHHHHCCCcEEEEcCCCC
Q 030531 145 MPGTAQLCGFLDSKKIRSSSTVFKVS 170 (175)
Q Consensus 145 ~PG~~e~L~~Lk~~gi~laIaTs~~~ 170 (175)
-+.+.+.++.++++|.++..+|++..
T Consensus 126 t~~vi~a~~~Ak~~G~~vI~iT~~~~ 151 (196)
T PRK13938 126 SMSVLRAAKTARELGVTVVAMTGESG 151 (196)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 57899999999999999999997653
No 298
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=23.52 E-value=71 Score=27.00 Aligned_cols=25 Identities=16% Similarity=0.309 Sum_probs=21.8
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEc
Q 030531 142 LQIMPGTAQLCGFLDSKKIRSSSTV 166 (175)
Q Consensus 142 ~~l~PG~~e~L~~Lk~~gi~laIaT 166 (175)
...+|+..++++.|+++|+++.+..
T Consensus 69 ~~~FPdp~~mi~~L~~~g~k~~~~i 93 (317)
T cd06599 69 KDRFPDPAAFVAKFHERGIRLAPNI 93 (317)
T ss_pred cccCCCHHHHHHHHHHCCCEEEEEe
Confidence 4578999999999999999998744
No 299
>PLN02580 trehalose-phosphatase
Probab=23.28 E-value=1e+02 Score=27.20 Aligned_cols=31 Identities=6% Similarity=-0.086 Sum_probs=25.7
Q ss_pred CCCCCchhHHHHHHHHHHCCCcEEEEcCCCCC
Q 030531 140 DRLQIMPGTAQLCGFLDSKKIRSSSTVFKVSF 171 (175)
Q Consensus 140 ~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~ 171 (175)
+...+-|++.+.|+.|.+. .+++|+|+.+..
T Consensus 138 d~A~~s~~~~~aL~~La~~-~~VAIVSGR~~~ 168 (384)
T PLN02580 138 DRALMSDAMRSAVKNVAKY-FPTAIISGRSRD 168 (384)
T ss_pred ccccCCHHHHHHHHHHhhC-CCEEEEeCCCHH
Confidence 4566778999999999887 689999988754
No 300
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=23.18 E-value=62 Score=32.67 Aligned_cols=27 Identities=11% Similarity=-0.010 Sum_probs=24.3
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEcCC
Q 030531 142 LQIMPGTAQLCGFLDSKKIRSSSTVFK 168 (175)
Q Consensus 142 ~~l~PG~~e~L~~Lk~~gi~laIaTs~ 168 (175)
-++-.||.|.++.|++.|||+-|.|+-
T Consensus 650 DkLQdgVPetI~~L~~AGIKIWVLTGD 676 (1151)
T KOG0206|consen 650 DKLQDGVPETIAKLAQAGIKIWVLTGD 676 (1151)
T ss_pred chhccCchHHHHHHHHcCCEEEEEcCc
Confidence 357899999999999999999999964
No 301
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=22.91 E-value=81 Score=26.74 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=21.5
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEc
Q 030531 142 LQIMPGTAQLCGFLDSKKIRSSSTV 166 (175)
Q Consensus 142 ~~l~PG~~e~L~~Lk~~gi~laIaT 166 (175)
-.-+|+.+++++.|+++|+++.+..
T Consensus 67 ~~~FPdp~~mi~~Lh~~G~~~~~~i 91 (317)
T cd06594 67 PERYPGLDELIEELKARGIRVLTYI 91 (317)
T ss_pred hhhCCCHHHHHHHHHHCCCEEEEEe
Confidence 3468999999999999999988765
No 302
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=22.90 E-value=98 Score=20.77 Aligned_cols=22 Identities=14% Similarity=0.093 Sum_probs=18.3
Q ss_pred CchhHHHHHHHHHHCCCcEEEE
Q 030531 144 IMPGTAQLCGFLDSKKIRSSST 165 (175)
Q Consensus 144 l~PG~~e~L~~Lk~~gi~laIa 165 (175)
..|.+.+.++.|++.|++-.++
T Consensus 43 ~~P~i~~~l~~l~~~g~~~vvv 64 (101)
T cd03409 43 LGPDTEEAIRELAEEGYQRVVI 64 (101)
T ss_pred CCCCHHHHHHHHHHcCCCeEEE
Confidence 3799999999999999776554
No 303
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=22.89 E-value=85 Score=26.55 Aligned_cols=25 Identities=8% Similarity=0.090 Sum_probs=21.5
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEc
Q 030531 142 LQIMPGTAQLCGFLDSKKIRSSSTV 166 (175)
Q Consensus 142 ~~l~PG~~e~L~~Lk~~gi~laIaT 166 (175)
..-+|+..++++.|+++|+++.+..
T Consensus 62 ~~~FPdp~~mi~~L~~~G~kv~~~i 86 (319)
T cd06591 62 PERFPDPKAMVRELHEMNAELMISI 86 (319)
T ss_pred hhhCCCHHHHHHHHHHCCCEEEEEe
Confidence 4568999999999999999987754
No 304
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=22.80 E-value=84 Score=21.23 Aligned_cols=29 Identities=17% Similarity=0.125 Sum_probs=21.7
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEcCCCCC
Q 030531 143 QIMPGTAQLCGFLDSKKIRSSSTVFKVSF 171 (175)
Q Consensus 143 ~l~PG~~e~L~~Lk~~gi~laIaTs~~~~ 171 (175)
.+.-|..++++.+++...++.|+.++++.
T Consensus 11 kl~~G~~~v~kai~~gkaklViiA~D~~~ 39 (82)
T PRK13602 11 SIVIGTKQTVKALKRGSVKEVVVAEDADP 39 (82)
T ss_pred CEEEcHHHHHHHHHcCCeeEEEEECCCCH
Confidence 46778888888888777777777776654
No 305
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=22.61 E-value=1.4e+02 Score=21.39 Aligned_cols=28 Identities=7% Similarity=-0.038 Sum_probs=23.5
Q ss_pred CCCCCchhHHHHHHHHHHCCCc-EEEEcC
Q 030531 140 DRLQIMPGTAQLCGFLDSKKIR-SSSTVF 167 (175)
Q Consensus 140 ~~~~l~PG~~e~L~~Lk~~gi~-laIaTs 167 (175)
+.-..+..+.++++.+++.|+. ++++|+
T Consensus 93 D~~~~~~~vv~v~d~~~~aG~~~v~l~t~ 121 (122)
T TIGR02803 93 DKTVDYGDLMKVMNLLRQAGYLKIGLVGL 121 (122)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEec
Confidence 4556788899999999999995 898886
No 306
>PRK11024 colicin uptake protein TolR; Provisional
Probab=22.52 E-value=1.3e+02 Score=22.17 Aligned_cols=29 Identities=7% Similarity=-0.067 Sum_probs=23.6
Q ss_pred CCCCCchhHHHHHHHHHHCCC-cEEEEcCC
Q 030531 140 DRLQIMPGTAQLCGFLDSKKI-RSSSTVFK 168 (175)
Q Consensus 140 ~~~~l~PG~~e~L~~Lk~~gi-~laIaTs~ 168 (175)
+.-..+..+.++++.+++.|+ +++++|.+
T Consensus 111 D~~~~~~~vv~vmd~~k~aG~~~v~l~t~~ 140 (141)
T PRK11024 111 AKDVPYDEIIKALNLLHSAGVKSVGLMTQP 140 (141)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 455677889999999999998 58888854
No 307
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=22.39 E-value=88 Score=26.10 Aligned_cols=27 Identities=11% Similarity=0.086 Sum_probs=22.8
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEcC
Q 030531 141 RLQIMPGTAQLCGFLDSKKIRSSSTVF 167 (175)
Q Consensus 141 ~~~l~PG~~e~L~~Lk~~gi~laIaTs 167 (175)
.-..+|+.+++++.|+++|+++++..+
T Consensus 61 d~~~FPd~~~~i~~l~~~G~~~~~~~~ 87 (308)
T cd06593 61 DPDRFPDPEGMLSRLKEKGFKVCLWIN 87 (308)
T ss_pred CcccCCCHHHHHHHHHHCCCeEEEEec
Confidence 345789999999999999999988653
No 308
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=22.06 E-value=38 Score=23.67 Aligned_cols=25 Identities=12% Similarity=0.125 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHCC--CcEEEEcCCCC
Q 030531 146 PGTAQLCGFLDSKK--IRSSSTVFKVS 170 (175)
Q Consensus 146 PG~~e~L~~Lk~~g--i~laIaTs~~~ 170 (175)
+.+.++++.+++.+ +.+.|.||..-
T Consensus 65 ~~l~~~i~~~~~~~~~~~i~i~TNg~~ 91 (119)
T PF13394_consen 65 EDLIELIEYLKERGPEIKIRIETNGTL 91 (119)
T ss_dssp HHHHHHHCTSTT-----EEEEEE-STT
T ss_pred HHHHHHHHHHHhhCCCceEEEEeCCee
Confidence 56889999999998 99999998754
No 309
>PLN02151 trehalose-phosphatase
Probab=21.98 E-value=1.2e+02 Score=26.55 Aligned_cols=31 Identities=13% Similarity=-0.037 Sum_probs=25.1
Q ss_pred CCCCCchhHHHHHHHHHHCCCcEEEEcCCCCC
Q 030531 140 DRLQIMPGTAQLCGFLDSKKIRSSSTVFKVSF 171 (175)
Q Consensus 140 ~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~~ 171 (175)
+...+-|++.+.|+.|. ++.+++|+|+.+..
T Consensus 117 ~~A~~~~~~~~aL~~La-~~~~vaIvSGR~~~ 147 (354)
T PLN02151 117 DRAFMSKKMRNTVRKLA-KCFPTAIVSGRCRE 147 (354)
T ss_pred ccccCCHHHHHHHHHHh-cCCCEEEEECCCHH
Confidence 34567899999999998 46899999987654
No 310
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=21.65 E-value=41 Score=28.18 Aligned_cols=15 Identities=40% Similarity=0.410 Sum_probs=11.9
Q ss_pred cceEEEeccccCccC
Q 030531 68 LRGVVFDMDGTLTVP 82 (175)
Q Consensus 68 ikaVIFDmDGTLvDS 82 (175)
.+..|||||-|||=-
T Consensus 2 e~VfvWDlDETlIif 16 (274)
T TIGR01658 2 ENVYVWDMDETLILL 16 (274)
T ss_pred ceeEEEeccchHHHH
Confidence 356899999999744
No 311
>PRK13936 phosphoheptose isomerase; Provisional
Probab=21.60 E-value=1.2e+02 Score=23.64 Aligned_cols=25 Identities=4% Similarity=-0.072 Sum_probs=22.0
Q ss_pred chhHHHHHHHHHHCCCcEEEEcCCC
Q 030531 145 MPGTAQLCGFLDSKKIRSSSTVFKV 169 (175)
Q Consensus 145 ~PG~~e~L~~Lk~~gi~laIaTs~~ 169 (175)
-+.+.+.++.++++|.++..+|++.
T Consensus 124 t~~~~~~~~~ak~~g~~iI~IT~~~ 148 (197)
T PRK13936 124 SANVIQAIQAAHEREMHVVALTGRD 148 (197)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCC
Confidence 4779999999999999999999854
No 312
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=21.36 E-value=96 Score=26.21 Aligned_cols=26 Identities=15% Similarity=0.167 Sum_probs=22.4
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEcC
Q 030531 142 LQIMPGTAQLCGFLDSKKIRSSSTVF 167 (175)
Q Consensus 142 ~~l~PG~~e~L~~Lk~~gi~laIaTs 167 (175)
-..+|+..++++.|+++|+++.+..+
T Consensus 66 ~~~FPdp~~mi~~L~~~G~k~~~~v~ 91 (317)
T cd06598 66 RKAFPDPAGMIADLAKKGVKTIVITE 91 (317)
T ss_pred cccCCCHHHHHHHHHHcCCcEEEEEc
Confidence 45789999999999999999988663
No 313
>PF06594 HCBP_related: Haemolysin-type calcium binding protein related domain; InterPro: IPR010566 This family consists of a number of bacteria specific domains, which are found in haemolysin-type calcium binding proteins. This family is found in conjunction with IPR001343 from INTERPRO and is often found in multiple copies.
Probab=20.83 E-value=52 Score=19.22 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=13.6
Q ss_pred CCCcceEEEeccccCccCh
Q 030531 65 KTRLRGVVFDMDGTLTVPV 83 (175)
Q Consensus 65 ~~~ikaVIFDmDGTLvDSe 83 (175)
...++-|.|+ |||.++..
T Consensus 24 ~~~Ie~i~Fa-DGt~w~~~ 41 (43)
T PF06594_consen 24 SYRIEQIEFA-DGTVWTRA 41 (43)
T ss_pred CCcEeEEEEc-CCCEecHH
Confidence 3458889998 89987753
No 314
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=20.50 E-value=1.3e+02 Score=24.43 Aligned_cols=26 Identities=0% Similarity=-0.396 Sum_probs=22.5
Q ss_pred CchhHHHHHHHHHHCCCcEEEEcCCC
Q 030531 144 IMPGTAQLCGFLDSKKIRSSSTVFKV 169 (175)
Q Consensus 144 l~PG~~e~L~~Lk~~gi~laIaTs~~ 169 (175)
-.+.+.+.++.++++|.++.++|++.
T Consensus 187 ~~~~~~~~~~~ak~~ga~iI~IT~~~ 212 (278)
T PRK11557 187 ERRELNLAADEALRVGAKVLAITGFT 212 (278)
T ss_pred CCHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 34678899999999999999999864
No 315
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=20.28 E-value=95 Score=30.60 Aligned_cols=27 Identities=11% Similarity=0.116 Sum_probs=24.6
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEcCCC
Q 030531 143 QIMPGTAQLCGFLDSKKIRSSSTVFKV 169 (175)
Q Consensus 143 ~l~PG~~e~L~~Lk~~gi~laIaTs~~ 169 (175)
+..||+++.++.++..|+.+-.+|+..
T Consensus 647 PvRPgV~~AV~~Cq~AGItVRMVTGDN 673 (1034)
T KOG0204|consen 647 PVRPGVPEAVQLCQRAGITVRMVTGDN 673 (1034)
T ss_pred CCCCCcHHHHHHHHHcCcEEEEEeCCc
Confidence 678999999999999999999999754
No 316
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.27 E-value=64 Score=27.24 Aligned_cols=31 Identities=10% Similarity=0.113 Sum_probs=26.5
Q ss_pred CCCCCchhHHHHHHHHHHCCCcEEEEcCCCC
Q 030531 140 DRLQIMPGTAQLCGFLDSKKIRSSSTVFKVS 170 (175)
Q Consensus 140 ~~~~l~PG~~e~L~~Lk~~gi~laIaTs~~~ 170 (175)
..+.+..|..++...|.++++|+-|.|.+-.
T Consensus 135 s~i~lReg~~~ff~~L~~~~IP~~iFSAGig 165 (298)
T KOG3128|consen 135 SNIALREGYEEFFEALQAHEIPLLIFSAGIG 165 (298)
T ss_pred hhHHHHHHHHHHHHHHHhCCCceEEEecchH
Confidence 3566889999999999999999999997643
Done!