Your job contains 1 sequence.
>030532
MSMPQSSSSSGQFTYAAAPAAPTTANSSYFPLPFHLQQTDPTAVSQYPPPAAYPAPVVPS
VYAAPVAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALASSDIEHKAETKKKSIPRK
AAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCFT
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 030532
(175 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2100840 - symbol:AT3G04500 species:3702 "Arabi... 470 1.2e-44 1
FB|FBgn0037342 - symbol:CG2931 species:7227 "Drosophila m... 230 3.1e-19 1
WB|WBGene00021901 - symbol:tag-262 species:6239 "Caenorha... 222 2.2e-18 1
UNIPROTKB|F1N7X9 - symbol:RBM42 "RNA-binding protein 42" ... 226 3.5e-18 1
UNIPROTKB|Q0P5L0 - symbol:RBM42 "RNA-binding protein 42" ... 226 3.5e-18 1
UNIPROTKB|K7EQ03 - symbol:RBM42 "RNA-binding protein 42" ... 225 3.8e-18 1
UNIPROTKB|K7EP90 - symbol:RBM42 "RNA-binding protein 42" ... 225 4.9e-18 1
MGI|MGI:1915285 - symbol:Rbm42 "RNA binding motif protein... 225 5.4e-18 1
RGD|1306184 - symbol:Rbm42 "RNA binding motif protein 42"... 225 5.4e-18 1
UNIPROTKB|Q6AXT7 - symbol:Rbm42 "RNA-binding protein 42" ... 225 5.4e-18 1
UNIPROTKB|F1RM56 - symbol:RBM42 "Uncharacterized protein"... 225 5.5e-18 1
UNIPROTKB|Q9BTD8 - symbol:RBM42 "RNA-binding protein 42" ... 225 5.6e-18 1
UNIPROTKB|F1PT81 - symbol:RBM42 "Uncharacterized protein"... 225 5.7e-18 1
ZFIN|ZDB-GENE-040809-2 - symbol:rbm42 "RNA binding motif ... 211 1.1e-16 1
POMBASE|SPAC22E12.02 - symbol:SPAC22E12.02 "RNA-binding p... 181 4.9e-14 1
DICTYBASE|DDB_G0277875 - symbol:ssbA "ssRNA-binding prote... 174 4.0e-13 1
ASPGD|ASPL0000013776 - symbol:AN3953 species:162425 "Emer... 159 4.3e-11 1
UNIPROTKB|G4MY51 - symbol:MGG_01274 "RNA-binding protein"... 134 3.2e-08 1
CGD|CAL0005693 - symbol:orf19.444 species:5476 "Candida a... 95 6.3e-05 1
UNIPROTKB|Q5A297 - symbol:CaO19.444 "Potential RNA bindin... 95 6.3e-05 1
UNIPROTKB|G4N7J4 - symbol:MGG_06400 "Nuclear and cytoplas... 101 0.00015 1
UNIPROTKB|G5E5Y0 - symbol:SNRPB2 "Uncharacterized protein... 95 0.00034 1
ASPGD|ASPL0000061196 - symbol:AN10164 species:162425 "Eme... 96 0.00051 1
>TAIR|locus:2100840 [details] [associations]
symbol:AT3G04500 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC022287 eggNOG:NOG306795
HSSP:O08583 HOGENOM:HOG000239273 EMBL:BT005571 EMBL:AK118315
IPI:IPI00527216 RefSeq:NP_187100.1 UniGene:At.40828
ProteinModelPortal:Q9M837 SMR:Q9M837 PaxDb:Q9M837 PRIDE:Q9M837
EnsemblPlants:AT3G04500.1 GeneID:819606 KEGG:ath:AT3G04500
TAIR:At3g04500 InParanoid:Q9M837 OMA:SNWRERT PhylomeDB:Q9M837
ProtClustDB:CLSN2684283 ArrayExpress:Q9M837 Genevestigator:Q9M837
Uniprot:Q9M837
Length = 245
Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
Identities = 87/98 (88%), Positives = 95/98 (96%)
Query: 73 PQYHQAQQLFQRDAQTITPEALESVKAALASSDIEHKAETKKKSIPRKAAGQTWEDPTLA 132
PQY QA QLFQRDAQTITPEALE+VKAALASS+ EHKAETKK++IPRKAAGQ+WEDPTL+
Sbjct: 71 PQYQQAHQLFQRDAQTITPEALENVKAALASSETEHKAETKKRAIPRKAAGQSWEDPTLS 130
Query: 133 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 170
EWPENDYRLFCGDLGNEVNDDVLSKAF+RFP+FNMAKV
Sbjct: 131 EWPENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKV 168
>FB|FBgn0037342 [details] [associations]
symbol:CG2931 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AE014297 GO:GO:0022008 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
HSSP:P09651 eggNOG:NOG306795 GeneTree:ENSGT00390000002894
EMBL:AY071420 RefSeq:NP_649552.1 UniGene:Dm.1071 SMR:Q9VND7
IntAct:Q9VND7 MINT:MINT-754250 EnsemblMetazoa:FBtr0078753
GeneID:40673 KEGG:dme:Dmel_CG2931 UCSC:CG2931-RA
FlyBase:FBgn0037342 InParanoid:Q9VND7 OMA:RAMKEMD OrthoDB:EOG4DJHC6
GenomeRNAi:40673 NextBio:819972 Uniprot:Q9VND7
Length = 302
Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 43/84 (51%), Positives = 62/84 (73%)
Query: 91 PEALESVKAALASSDIEHKAETKKKSIPRK----AAGQTWEDPTLAEWPENDYRLFCGDL 146
P A E++KAA ASS ++ T++K RK A G WED +LA+WP++D+R+FCGDL
Sbjct: 146 PIAEEAIKAARASSALQSFQTTERKKKDRKTVRIAGGTVWEDTSLADWPDDDFRIFCGDL 205
Query: 147 GNEVNDDVLSKAFSRFPSFNMAKV 170
GN+VND+VL++ F++FPSF A+V
Sbjct: 206 GNDVNDEVLTRTFNKFPSFQRARV 229
>WB|WBGene00021901 [details] [associations]
symbol:tag-262 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000003 GO:GO:0003676 HSSP:P09651
EMBL:FO081201 eggNOG:NOG306795 GeneTree:ENSGT00390000002894
RefSeq:NP_498090.1 ProteinModelPortal:Q9N394 SMR:Q9N394
IntAct:Q9N394 STRING:Q9N394 PaxDb:Q9N394 EnsemblMetazoa:Y54H5A.3
GeneID:175700 KEGG:cel:CELE_Y54H5A.3 UCSC:Y54H5A.3 CTD:175700
WormBase:Y54H5A.3 HOGENOM:HOG000239273 InParanoid:Q9N394
OMA:RAMREMD NextBio:889270 Uniprot:Q9N394
Length = 302
Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 38/62 (61%), Positives = 48/62 (77%)
Query: 109 KAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMA 168
K + KK R GQ WEDP+LAEW END+R+FCGDLGNEV+D++L+KAF ++PSF A
Sbjct: 173 KEQQAKKKFVRSGGGQVWEDPSLAEWDENDFRVFCGDLGNEVSDELLAKAFRKYPSFQKA 232
Query: 169 KV 170
KV
Sbjct: 233 KV 234
>UNIPROTKB|F1N7X9 [details] [associations]
symbol:RBM42 "RNA-binding protein 42" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00717903
UniGene:Bt.62303 GeneTree:ENSGT00390000002894 OMA:FIPHVLQ
EMBL:DAAA02046949 Ensembl:ENSBTAT00000017884 Uniprot:F1N7X9
Length = 448
Score = 226 (84.6 bits), Expect = 3.5e-18, P = 3.5e-18
Identities = 46/78 (58%), Positives = 57/78 (73%)
Query: 93 ALESVKAALASSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVND 152
ALE V L+ + K E K+ I R AAG +WEDP+L EW +D+R+FCGDLGNEVND
Sbjct: 305 ALE-VPEPLSEDKKKGKPEKLKRCI-RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVND 362
Query: 153 DVLSKAFSRFPSFNMAKV 170
D+L++AFSRFPSF AKV
Sbjct: 363 DILARAFSRFPSFLKAKV 380
>UNIPROTKB|Q0P5L0 [details] [associations]
symbol:RBM42 "RNA-binding protein 42" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:BC119904 IPI:IPI00717903 RefSeq:NP_001069673.1
UniGene:Bt.62303 ProteinModelPortal:Q0P5L0 STRING:Q0P5L0
GeneID:540172 KEGG:bta:540172 CTD:79171 eggNOG:NOG306795
HOGENOM:HOG000154080 HOVERGEN:HBG060478 NextBio:20878465
Uniprot:Q0P5L0
Length = 448
Score = 226 (84.6 bits), Expect = 3.5e-18, P = 3.5e-18
Identities = 46/78 (58%), Positives = 57/78 (73%)
Query: 93 ALESVKAALASSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVND 152
ALE V L+ + K E K+ I R AAG +WEDP+L EW +D+R+FCGDLGNEVND
Sbjct: 305 ALE-VPEPLSEDKKKGKPEKLKRCI-RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVND 362
Query: 153 DVLSKAFSRFPSFNMAKV 170
D+L++AFSRFPSF AKV
Sbjct: 363 DILARAFSRFPSFLKAKV 380
>UNIPROTKB|K7EQ03 [details] [associations]
symbol:RBM42 "RNA-binding protein 42" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 EMBL:AC002115 HGNC:HGNC:28117
Ensembl:ENST00000592202 Uniprot:K7EQ03
Length = 426
Score = 225 (84.3 bits), Expect = 3.8e-18, P = 3.8e-18
Identities = 46/78 (58%), Positives = 56/78 (71%)
Query: 93 ALESVKAALASSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVND 152
ALE V L + K E K+ I R AAG +WEDP+L EW +D+R+FCGDLGNEVND
Sbjct: 283 ALE-VPEPLGEDKKKGKPEKLKRCI-RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVND 340
Query: 153 DVLSKAFSRFPSFNMAKV 170
D+L++AFSRFPSF AKV
Sbjct: 341 DILARAFSRFPSFLKAKV 358
>UNIPROTKB|K7EP90 [details] [associations]
symbol:RBM42 "RNA-binding protein 42" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 EMBL:AC002115 HGNC:HGNC:28117
Ensembl:ENST00000589871 Uniprot:K7EP90
Length = 458
Score = 225 (84.3 bits), Expect = 4.9e-18, P = 4.9e-18
Identities = 46/78 (58%), Positives = 56/78 (71%)
Query: 93 ALESVKAALASSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVND 152
ALE V L + K E K+ I R AAG +WEDP+L EW +D+R+FCGDLGNEVND
Sbjct: 315 ALE-VPEPLGEDKKKGKPEKLKRCI-RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVND 372
Query: 153 DVLSKAFSRFPSFNMAKV 170
D+L++AFSRFPSF AKV
Sbjct: 373 DILARAFSRFPSFLKAKV 390
>MGI|MGI:1915285 [details] [associations]
symbol:Rbm42 "RNA binding motif protein 42" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1915285 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q15427 CTD:79171
eggNOG:NOG306795 HOGENOM:HOG000154080 HOVERGEN:HBG060478
GeneTree:ENSGT00390000002894 OrthoDB:EOG4J9N0T OMA:FIPHVLQ
EMBL:AK151000 EMBL:BC009148 EMBL:BC011286 EMBL:BC027372
EMBL:BC057928 IPI:IPI00126204 IPI:IPI00853826 RefSeq:NP_598454.2
UniGene:Mm.401747 ProteinModelPortal:Q91V81 SMR:Q91V81
STRING:Q91V81 PhosphoSite:Q91V81 PaxDb:Q91V81 PRIDE:Q91V81
Ensembl:ENSMUST00000042726 GeneID:68035 KEGG:mmu:68035
UCSC:uc009gfn.2 UCSC:uc009gfp.1 InParanoid:Q91V81 NextBio:326262
Bgee:Q91V81 CleanEx:MM_RBM42 Genevestigator:Q91V81 Uniprot:Q91V81
Length = 474
Score = 225 (84.3 bits), Expect = 5.4e-18, P = 5.4e-18
Identities = 46/78 (58%), Positives = 56/78 (71%)
Query: 93 ALESVKAALASSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVND 152
ALE V L + K E K+ I R AAG +WEDP+L EW +D+R+FCGDLGNEVND
Sbjct: 331 ALE-VPEPLGEDKKKGKPEKLKRCI-RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVND 388
Query: 153 DVLSKAFSRFPSFNMAKV 170
D+L++AFSRFPSF AKV
Sbjct: 389 DILARAFSRFPSFLKAKV 406
>RGD|1306184 [details] [associations]
symbol:Rbm42 "RNA binding motif protein 42" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1306184 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q15427 CTD:79171
eggNOG:NOG306795 HOGENOM:HOG000154080 HOVERGEN:HBG060478
OrthoDB:EOG4J9N0T EMBL:BC079321 IPI:IPI00365702
RefSeq:NP_001014181.2 UniGene:Rn.17083 ProteinModelPortal:Q6AXT7
STRING:Q6AXT7 PhosphoSite:Q6AXT7 GeneID:361545 KEGG:rno:361545
UCSC:RGD:1306184 InParanoid:Q6AXT7 NextBio:676676
Genevestigator:Q6AXT7 Uniprot:Q6AXT7
Length = 474
Score = 225 (84.3 bits), Expect = 5.4e-18, P = 5.4e-18
Identities = 46/78 (58%), Positives = 56/78 (71%)
Query: 93 ALESVKAALASSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVND 152
ALE V L + K E K+ I R AAG +WEDP+L EW +D+R+FCGDLGNEVND
Sbjct: 331 ALE-VPEPLGEDKKKGKPEKLKRCI-RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVND 388
Query: 153 DVLSKAFSRFPSFNMAKV 170
D+L++AFSRFPSF AKV
Sbjct: 389 DILARAFSRFPSFLKAKV 406
>UNIPROTKB|Q6AXT7 [details] [associations]
symbol:Rbm42 "RNA-binding protein 42" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1306184 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q15427 CTD:79171
eggNOG:NOG306795 HOGENOM:HOG000154080 HOVERGEN:HBG060478
OrthoDB:EOG4J9N0T EMBL:BC079321 IPI:IPI00365702
RefSeq:NP_001014181.2 UniGene:Rn.17083 ProteinModelPortal:Q6AXT7
STRING:Q6AXT7 PhosphoSite:Q6AXT7 GeneID:361545 KEGG:rno:361545
UCSC:RGD:1306184 InParanoid:Q6AXT7 NextBio:676676
Genevestigator:Q6AXT7 Uniprot:Q6AXT7
Length = 474
Score = 225 (84.3 bits), Expect = 5.4e-18, P = 5.4e-18
Identities = 46/78 (58%), Positives = 56/78 (71%)
Query: 93 ALESVKAALASSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVND 152
ALE V L + K E K+ I R AAG +WEDP+L EW +D+R+FCGDLGNEVND
Sbjct: 331 ALE-VPEPLGEDKKKGKPEKLKRCI-RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVND 388
Query: 153 DVLSKAFSRFPSFNMAKV 170
D+L++AFSRFPSF AKV
Sbjct: 389 DILARAFSRFPSFLKAKV 406
>UNIPROTKB|F1RM56 [details] [associations]
symbol:RBM42 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000002894 OMA:FIPHVLQ EMBL:FP243365
RefSeq:XP_003127114.1 UniGene:Ssc.7915 Ensembl:ENSSSCT00000003210
GeneID:100520432 KEGG:ssc:100520432 Uniprot:F1RM56
Length = 477
Score = 225 (84.3 bits), Expect = 5.5e-18, P = 5.5e-18
Identities = 46/78 (58%), Positives = 56/78 (71%)
Query: 93 ALESVKAALASSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVND 152
ALE V L + K E K+ I R AAG +WEDP+L EW +D+R+FCGDLGNEVND
Sbjct: 334 ALE-VPEPLGEDKKKGKPEKLKRCI-RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVND 391
Query: 153 DVLSKAFSRFPSFNMAKV 170
D+L++AFSRFPSF AKV
Sbjct: 392 DILARAFSRFPSFLKAKV 409
>UNIPROTKB|Q9BTD8 [details] [associations]
symbol:RBM42 "RNA-binding protein 42" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC002115 HSSP:Q15427 CTD:79171 eggNOG:NOG306795
HOGENOM:HOG000154080 HOVERGEN:HBG060478 OrthoDB:EOG4J9N0T
EMBL:BC002868 EMBL:BC004204 EMBL:BC031682 IPI:IPI00021626
IPI:IPI00074329 IPI:IPI00550442 IPI:IPI00929470 RefSeq:NP_077297.2
UniGene:Hs.5086 ProteinModelPortal:Q9BTD8 SMR:Q9BTD8 IntAct:Q9BTD8
MINT:MINT-2876248 STRING:Q9BTD8 PhosphoSite:Q9BTD8 DMDM:74761247
PaxDb:Q9BTD8 PRIDE:Q9BTD8 DNASU:79171 Ensembl:ENST00000262633
Ensembl:ENST00000360475 GeneID:79171 KEGG:hsa:79171 UCSC:uc002oan.3
UCSC:uc002oap.3 UCSC:uc002oaq.3 GeneCards:GC19P036119
HGNC:HGNC:28117 HPA:HPA043671 MIM:613232 neXtProt:NX_Q9BTD8
PharmGKB:PA162400760 InParanoid:Q9BTD8 OMA:FIPHVLQ PhylomeDB:Q9BTD8
ChiTaRS:RBM42 GenomeRNAi:79171 NextBio:68133 Bgee:Q9BTD8
CleanEx:HS_RBM42 Genevestigator:Q9BTD8 Uniprot:Q9BTD8
Length = 480
Score = 225 (84.3 bits), Expect = 5.6e-18, P = 5.6e-18
Identities = 46/78 (58%), Positives = 56/78 (71%)
Query: 93 ALESVKAALASSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVND 152
ALE V L + K E K+ I R AAG +WEDP+L EW +D+R+FCGDLGNEVND
Sbjct: 337 ALE-VPEPLGEDKKKGKPEKLKRCI-RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVND 394
Query: 153 DVLSKAFSRFPSFNMAKV 170
D+L++AFSRFPSF AKV
Sbjct: 395 DILARAFSRFPSFLKAKV 412
>UNIPROTKB|F1PT81 [details] [associations]
symbol:RBM42 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101661 EMBL:AAEX03001010 EMBL:AAEX03001009
Ensembl:ENSCAFT00000011116 Uniprot:F1PT81
Length = 483
Score = 225 (84.3 bits), Expect = 5.7e-18, P = 5.7e-18
Identities = 46/78 (58%), Positives = 56/78 (71%)
Query: 93 ALESVKAALASSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVND 152
ALE V L + K E K+ I R AAG +WEDP+L EW +D+R+FCGDLGNEVND
Sbjct: 341 ALE-VPEPLGEDKKKGKPEKLKRCI-RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVND 398
Query: 153 DVLSKAFSRFPSFNMAKV 170
D+L++AFSRFPSF AKV
Sbjct: 399 DILARAFSRFPSFLKAKV 416
>ZFIN|ZDB-GENE-040809-2 [details] [associations]
symbol:rbm42 "RNA binding motif protein 42"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0002088 "lens development in camera-type eye" evidence=IMP]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040809-2 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0002088
HSSP:Q60900 CTD:79171 eggNOG:NOG306795 HOGENOM:HOG000154080
HOVERGEN:HBG060478 EMBL:AY648798 EMBL:BC095046 IPI:IPI00499960
RefSeq:NP_001003850.1 UniGene:Dr.77446 ProteinModelPortal:Q6DRG1
Ensembl:ENSDART00000058380 GeneID:445360 KEGG:dre:445360
GeneTree:ENSGT00390000002894 InParanoid:Q504F4 OrthoDB:EOG4J9N0T
NextBio:20832076 Bgee:Q6DRG1 Uniprot:Q6DRG1
Length = 402
Score = 211 (79.3 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 40/80 (50%), Positives = 54/80 (67%)
Query: 91 PEALESVKAALASSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEV 150
PE + ++ D + + K K R AAG +WED +L EW +D+R+FCGDLGNEV
Sbjct: 255 PEPVHVEPVDTSTEDKKKGKQEKVKKCIRVAAGVSWEDTSLLEWETDDFRIFCGDLGNEV 314
Query: 151 NDDVLSKAFSRFPSFNMAKV 170
NDD+L++AFSR+PSF AKV
Sbjct: 315 NDDILARAFSRYPSFLKAKV 334
>POMBASE|SPAC22E12.02 [details] [associations]
symbol:SPAC22E12.02 "RNA-binding protein" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0007126 "meiosis"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC22E12.02 GO:GO:0005634
GO:GO:0007126 EMBL:CU329670 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:NOG306795 PIR:T38159 RefSeq:NP_594828.1
ProteinModelPortal:Q10355 EnsemblFungi:SPAC22E12.02.1
GeneID:2541753 KEGG:spo:SPAC22E12.02 OrthoDB:EOG469V4H
NextBio:20802844 Uniprot:Q10355
Length = 219
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 33/57 (57%), Positives = 41/57 (71%)
Query: 114 KKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 170
K ++ RKA GQ WEDPTL EW N +RLF G+LGN+VND+ L +AFS +PS KV
Sbjct: 5 KTTVVRKAGGQVWEDPTLLEWDPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKV 61
>DICTYBASE|DDB_G0277875 [details] [associations]
symbol:ssbA "ssRNA-binding protein" species:44689
"Dictyostelium discoideum" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0277875 GO:GO:0000166
GenomeReviews:CM000152_GR EMBL:AAFI02000023 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:NOG306795 RefSeq:XP_642055.1
ProteinModelPortal:Q54YZ7 EnsemblProtists:DDB0214897 GeneID:8621267
KEGG:ddi:DDB_G0277875 InParanoid:Q54YZ7 ProtClustDB:CLSZ2846831
Uniprot:Q54YZ7
Length = 286
Score = 174 (66.3 bits), Expect = 4.0e-13, P = 4.0e-13
Identities = 33/63 (52%), Positives = 46/63 (73%)
Query: 111 ETKKKS-IPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAK 169
E KK + I +AAG+ W D TLAEW ND+R+F GDLGN+V +++L +AF ++P+F AK
Sbjct: 171 EPKKNTNIVMEAAGEKWTDHTLAEWDPNDFRIFVGDLGNDVTEEMLRQAFLKYPTFLKAK 230
Query: 170 VSF 172
V F
Sbjct: 231 VIF 233
>ASPGD|ASPL0000013776 [details] [associations]
symbol:AN3953 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001302 EMBL:AACD01000064 eggNOG:NOG306795 OrthoDB:EOG469V4H
RefSeq:XP_661557.1 ProteinModelPortal:Q5B677
EnsemblFungi:CADANIAT00004740 GeneID:2873369 KEGG:ani:AN3953.2
HOGENOM:HOG000215409 OMA:AQIAQWQ Uniprot:Q5B677
Length = 353
Score = 159 (61.0 bits), Expect = 4.3e-11, P = 4.3e-11
Identities = 35/90 (38%), Positives = 48/90 (53%)
Query: 83 QRDAQTITPEA--LESVKAALASSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYR 140
+R+ T TP A + + +S +K++ R GQTW DPTL EW +R
Sbjct: 169 RREGSTGTPGATTVYTSSGTTPTSTTPAAGVESQKTVVRSGGGQTWTDPTLLEWDPAHFR 228
Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 170
LF G+L EV DD L KAFS++ S A+V
Sbjct: 229 LFVGNLAGEVTDDSLFKAFSKYTSVQKARV 258
>UNIPROTKB|G4MY51 [details] [associations]
symbol:MGG_01274 "RNA-binding protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CM001232 RefSeq:XP_003714189.1 EnsemblFungi:MGG_01274T0
GeneID:2679440 KEGG:mgr:MGG_01274 Uniprot:G4MY51
Length = 412
Score = 134 (52.2 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 26/60 (43%), Positives = 35/60 (58%)
Query: 111 ETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 170
+ +KK++ R G+ W D TL EW RLF G+L E D+ L KAFSR+ S +KV
Sbjct: 242 DERKKTVYRTGGGKKWADDTLVEWDPTHLRLFVGNLAGETTDESLLKAFSRWKSVQKSKV 301
>CGD|CAL0005693 [details] [associations]
symbol:orf19.444 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0005693 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000078
EMBL:AACQ01000077 eggNOG:NOG306795 RefSeq:XP_715879.1
RefSeq:XP_715929.1 ProteinModelPortal:Q5A297 GeneID:3642415
GeneID:3642464 KEGG:cal:CaO19.444 KEGG:cal:CaO19.8074
HOGENOM:HOG000093291 Uniprot:Q5A297
Length = 145
Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 130 TLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 170
T W +RLF G+LG + ND++L +AFS++PS + V
Sbjct: 47 TAPNWNPKHFRLFVGNLGPDGNDELLKEAFSKYPSMSQVHV 87
>UNIPROTKB|Q5A297 [details] [associations]
symbol:CaO19.444 "Potential RNA binding protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0005693 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000078
EMBL:AACQ01000077 eggNOG:NOG306795 RefSeq:XP_715879.1
RefSeq:XP_715929.1 ProteinModelPortal:Q5A297 GeneID:3642415
GeneID:3642464 KEGG:cal:CaO19.444 KEGG:cal:CaO19.8074
HOGENOM:HOG000093291 Uniprot:Q5A297
Length = 145
Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 130 TLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 170
T W +RLF G+LG + ND++L +AFS++PS + V
Sbjct: 47 TAPNWNPKHFRLFVGNLGPDGNDELLKEAFSKYPSMSQVHV 87
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 101 (40.6 bits), Expect = 0.00015, P = 0.00015
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 108 HKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNM 167
H++E + + A T ED + N + +F GDL NEVND+VL++AFS F S +
Sbjct: 151 HQSEIRVNWAYQAATSATKEDTS------NHFHIFVGDLSNEVNDEVLTQAFSVFGSVSE 204
Query: 168 AKV 170
A+V
Sbjct: 205 ARV 207
>UNIPROTKB|G5E5Y0 [details] [associations]
symbol:SNRPB2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0017069 "snRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398 GO:GO:0071013
GO:GO:0017069 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
KO:K11094 OMA:TTANKKP CTD:6629 EMBL:DAAA02035191
RefSeq:NP_001179481.1 UniGene:Bt.61931 Ensembl:ENSBTAT00000039526
GeneID:767873 KEGG:bta:767873 NextBio:20918232 Uniprot:G5E5Y0
Length = 218
Score = 95 (38.5 bits), Expect = 0.00034, P = 0.00034
Identities = 23/76 (30%), Positives = 36/76 (47%)
Query: 95 ESVKAALASSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDV 154
E K + +E A T K P G +P + ++P N Y LF +L E N+ +
Sbjct: 102 EKKKEKKKAKTVEQTATTVNKK-PANTQGNATPNPQVPDYPPN-YILFLNNLPEETNEMM 159
Query: 155 LSKAFSRFPSFNMAKV 170
LS F++FP F ++
Sbjct: 160 LSMLFNQFPGFKEVRL 175
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 96 (38.9 bits), Expect = 0.00051, P = 0.00051
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 170
N + +F GDL NEVND+VL +AFS F S + A+V
Sbjct: 180 NHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARV 213
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.129 0.393 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 175 131 0.00091 102 3 11 22 0.41 31
29 0.42 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 23
No. of states in DFA: 592 (63 KB)
Total size of DFA: 145 KB (2088 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 13.36u 0.17s 13.53t Elapsed: 00:00:00
Total cpu time: 13.36u 0.17s 13.53t Elapsed: 00:00:00
Start: Sat May 11 05:02:09 2013 End: Sat May 11 05:02:09 2013